RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7811
(94 letters)
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 71.3 bits (174), Expect = 8e-17
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 21 PNPSVITFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG 80
+FEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E
Sbjct: 383 EVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEK 442
Query: 81 KPNGLLCVLDDQ 92
KP GL+ +LD+
Sbjct: 443 KPIGLISLLDEA 454
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 67.8 bits (165), Expect = 2e-15
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 22 NPSVITFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK 81
+FEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F + + K
Sbjct: 420 IFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEK 479
Query: 82 PNGLLCVLDDQ 92
P G+ +L+++
Sbjct: 480 PMGIFSILEEE 490
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 67.5 bits (164), Expect = 2e-15
Identities = 35/74 (47%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 22 NPSVITFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG 80
+ +FEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E
Sbjct: 392 IFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIER 451
Query: 81 --KPNGLLCVLDDQ 92
P G+L +LD++
Sbjct: 452 PTNPPGVLALLDEE 465
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 67.0 bits (163), Expect = 3e-15
Identities = 33/71 (46%), Positives = 44/71 (61%)
Query: 22 NPSVITFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK 81
+FEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F + + K
Sbjct: 418 IFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK 477
Query: 82 PNGLLCVLDDQ 92
P G+L +L+++
Sbjct: 478 PMGILSILEEE 488
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 66.7 bits (162), Expect = 4e-15
Identities = 38/72 (52%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Query: 21 PNPSVITFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG 80
+ +FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E
Sbjct: 380 ETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEA 439
Query: 81 KPNGLLCVLDDQ 92
K G+L +LD++
Sbjct: 440 K-MGVLDLLDEE 450
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 62.8 bits (152), Expect = 9e-14
Identities = 37/73 (50%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 22 NPSVITFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG 80
V +FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G
Sbjct: 413 IFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDG 472
Query: 81 -KPNGLLCVLDDQ 92
+P G+L +LD+Q
Sbjct: 473 RQPPGILALLDEQ 485
>d2tbva_ b.121.4.7 (A:) Tombusvirus coat protein {TBSV (Tomato
bushy stunt virus) [TaxId: 12145]}
Length = 287
Score = 28.7 bits (64), Expect = 0.072
Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 28/69 (40%)
Query: 5 GVTITSHRRY------------------HRRRLNP-NPSVITFEQL---CINYANEHLQY 42
GVT+TSHR Y + +LNP N + F L N+ QY
Sbjct: 2 GVTVTSHREYLTQVNNSSGFVVNGGIVGNSLQLNPSNGT--LFSWLPALASNFD----QY 55
Query: 43 YFNQHVFQY 51
FN V Y
Sbjct: 56 SFNSVVLDY 64
>d1s48a_ e.8.1.4 (A:) Viral RNA polymerase {Bovine viral diarrhea
virus [TaxId: 11099]}
Length = 588
Score = 28.3 bits (63), Expect = 0.13
Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 2/70 (2%)
Query: 1 MNKLGVTITSHRRYHRRRLNPNPSVITFEQLCINYANEHLQYYFNQHVFQYEQEEY--NK 58
GV S R R + + + E+ ++ + E K
Sbjct: 336 CESTGVPYKSFNRVARIHVCGDDGFLITEKGLGLKFANKGMQILHEAGKPQKITEGEKMK 395
Query: 59 EGIRWRHIEF 68
R+ IEF
Sbjct: 396 VAYRFEDIEF 405
>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
Length = 476
Score = 24.5 bits (53), Expect = 2.3
Identities = 8/39 (20%), Positives = 10/39 (25%)
Query: 33 INYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 71
I Y + Q F+ W H E D
Sbjct: 377 ITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDY 415
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell
leukemia virus type 2 [TaxId: 11909]}
Length = 137
Score = 22.9 bits (49), Expect = 6.1
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 18 RLNPNPSVITFEQL 31
RL P PS F+QL
Sbjct: 34 RLQPGPSDFDFQQL 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.433
Gapped
Lambda K H
0.267 0.0592 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 376,710
Number of extensions: 15789
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 21
Length of query: 94
Length of database: 2,407,596
Length adjustment: 57
Effective length of query: 37
Effective length of database: 1,624,986
Effective search space: 60124482
Effective search space used: 60124482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)