BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7814
(460 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LB4|A Chain A, Traf6 Apo Structure
Length = 159
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 86/157 (54%), Gaps = 14/157 (8%)
Query: 309 CNGVYFWKMYNFPAKLK-EMKEINRYFYSACFYSSCFGYRFCTRVNISREDAQ----YLS 363
CNG+Y WK+ NF LK + +E +S FY+ GY+ C R+++ AQ Y+S
Sbjct: 2 CNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYIS 61
Query: 364 LFIHLVQGENDDILDWPFVGRIRFTALNTSSEFSIT---DEIQSDK-NFDSFKRPVNFFL 419
LF+H +QGE D L WPF G IR T L+ SE + +EI K +F+RP
Sbjct: 62 LFVHTMQGEYDSHLPWPFQGTIRLTILD-QSEAPVRQNHEEIMDAKPELLAFQRP-TIPR 119
Query: 420 NKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVT 456
N K FG+ F+ + + R F+ +DDT +++ +V+
Sbjct: 120 NPKGFGYVTFMHLEALRQ--RTFI-KDDTLLVRCEVS 153
>pdb|1LB5|A Chain A, Traf6-Rank Complex
pdb|1LB6|A Chain A, Traf6-Cd40 Complex
Length = 160
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 86/157 (54%), Gaps = 14/157 (8%)
Query: 309 CNGVYFWKMYNFPAKLK-EMKEINRYFYSACFYSSCFGYRFCTRVNISREDAQ----YLS 363
CNG+Y WK+ NF LK + +E +S FY+ GY+ C R+++ AQ Y+S
Sbjct: 3 CNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYIS 62
Query: 364 LFIHLVQGENDDILDWPFVGRIRFTALNTSSEFSIT---DEIQSDK-NFDSFKRPVNFFL 419
LF+H +QGE D L WPF G IR T L+ SE + +EI K +F+RP
Sbjct: 63 LFVHTMQGEYDSHLPWPFQGTIRLTILD-QSEAPVRQNHEEIMDAKPELLAFQRP-TIPR 120
Query: 420 NKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVT 456
N K FG+ F+ + + R F+ +DDT +++ +V+
Sbjct: 121 NPKGFGYVTFMHLEALRQ--RTFI-KDDTLLVRCEVS 154
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 79.7 bits (195), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 13 LDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNY 72
L+ ++EC ICL L++A+ T CGH+FC ACI I G CP+D ++L ++ +F DN+
Sbjct: 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHK-CPVDNEILLENQLFPDNF 73
Query: 73 TRREILENNLTCPYKQCSSQLSIPEYESHVNTC 105
+REIL + CP + C ++ + E H C
Sbjct: 74 AKREILSLMVKCPNEGCLHKMELRHLEDHQAHC 106
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 13 LDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNY 72
L+ ++EC ICL L++A+ T CGH+FC ACI I G + CP+D ++L ++ +F DN+
Sbjct: 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG-HKCPVDNEILLENQLFPDNF 73
Query: 73 TRREILENNLTCPYKQCSSQLSIPEYESHVNTC 105
+REIL + CP + C ++ + E H C
Sbjct: 74 AKREILSLMVKCPNEGCLHKMELRHLEDHQAHC 106
>pdb|1CZZ|A Chain A, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 17-Residue Cd40 Peptide
pdb|1CZZ|B Chain B, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 17-Residue Cd40 Peptide
pdb|1CZZ|C Chain C, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 17-Residue Cd40 Peptide
Length = 187
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
Query: 310 NGVYFWKMYNFPAKLKEMKEIN-RYFYSACFYSSCFGYRFCTRVNISRED---AQYLSLF 365
+GV+ WK+ +FP K +E +S FY+S +GY+ C R+ ++ + +LSLF
Sbjct: 37 DGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLF 96
Query: 366 IHLVQGENDDILDWPFVGRIRFTALNTSSEFSITDEIQSDKNFDSFKRPVN 416
+++G ND +L WPF ++ L+ ++ + D + D SF+RPVN
Sbjct: 97 FVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVN 147
>pdb|1CZY|A Chain A, Crystal Structure Of The Complex Between The Traf Domain
Of Human Traf2 And An Lmp1 Binding Peptide
pdb|1CZY|B Chain B, Crystal Structure Of The Complex Between The Traf Domain
Of Human Traf2 And An Lmp1 Binding Peptide
pdb|1CZY|C Chain C, Crystal Structure Of The Complex Between The Traf Domain
Of Human Traf2 And An Lmp1 Binding Peptide
pdb|1D0A|A Chain A, Structure Of Tnf Receptor Associated Factor 2 (Traf2) In
Complex With A Human Ox40 Peptide
pdb|1D0A|B Chain B, Structure Of Tnf Receptor Associated Factor 2 (Traf2) In
Complex With A Human Ox40 Peptide
pdb|1D0A|C Chain C, Structure Of Tnf Receptor Associated Factor 2 (Traf2) In
Complex With A Human Ox40 Peptide
pdb|1D0A|D Chain D, Structure Of Tnf Receptor Associated Factor 2 (Traf2) In
Complex With A Human Ox40 Peptide
pdb|1D0A|E Chain E, Structure Of Tnf Receptor Associated Factor 2 (Traf2) In
Complex With A Human Ox40 Peptide
pdb|1D0A|F Chain F, Structure Of Tnf Receptor Associated Factor 2 (Traf2) In
Complex With A Human Ox40 Peptide
pdb|1D01|A Chain A, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Human Cd30 Peptide
pdb|1D01|B Chain B, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Human Cd30 Peptide
pdb|1D01|C Chain C, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Human Cd30 Peptide
pdb|1D01|D Chain D, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Human Cd30 Peptide
pdb|1D01|E Chain E, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Human Cd30 Peptide
pdb|1D01|F Chain F, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Human Cd30 Peptide
Length = 168
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
Query: 310 NGVYFWKMYNFPAKLKEMKEIN-RYFYSACFYSSCFGYRFCTRVNISRED---AQYLSLF 365
+GV+ WK+ +FP K +E +S FY+S +GY+ C R+ ++ + +LSLF
Sbjct: 18 DGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLF 77
Query: 366 IHLVQGENDDILDWPFVGRIRFTALNTSSEFSITDEIQSDKNFDSFKRPVN 416
+++G ND +L WPF ++ L+ ++ + D + D SF+RPVN
Sbjct: 78 FVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVN 128
>pdb|1F3V|B Chain B, Crystal Structure Of The Complex Between The N-Terminal
Domain Of Tradd And The Traf Domain Of Traf2
Length = 171
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 61/111 (54%), Gaps = 4/111 (3%)
Query: 310 NGVYFWKMYNFPAKLKEMKEIN-RYFYSACFYSSCFGYRFCTRVNISRED---AQYLSLF 365
+GV+ WK+ +FP K +E +S FY+S +GY+ C R+ ++ + +LSLF
Sbjct: 21 DGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKXCLRIYLNGDGTGRGTHLSLF 80
Query: 366 IHLVQGENDDILDWPFVGRIRFTALNTSSEFSITDEIQSDKNFDSFKRPVN 416
+ +G ND +L WPF ++ L+ ++ + D + D SF+RPVN
Sbjct: 81 FVVXKGPNDALLRWPFNQKVTLXLLDQNNREHVIDAFRPDVTSSSFQRPVN 131
>pdb|1CA9|A Chain A, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Peptide From Tnf-R2
pdb|1CA9|B Chain B, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Peptide From Tnf-R2
pdb|1CA9|C Chain C, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Peptide From Tnf-R2
pdb|1CA9|D Chain D, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Peptide From Tnf-R2
pdb|1CA9|E Chain E, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Peptide From Tnf-R2
pdb|1CA9|F Chain F, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Peptide From Tnf-R2
Length = 192
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 4/111 (3%)
Query: 310 NGVYFWKMYNFPAKLKEMKEIN-RYFYSACFYSSCFGYRFCTRVNISRED---AQYLSLF 365
+GV+ WK+ +F K +E +S FY+S +GY+ C R+ ++ + +LSLF
Sbjct: 42 DGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLF 101
Query: 366 IHLVQGENDDILDWPFVGRIRFTALNTSSEFSITDEIQSDKNFDSFKRPVN 416
+++G ND +L WPF ++ L+ ++ + D + D SF+RPVN
Sbjct: 102 FVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVN 152
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 69.3 bits (168), Expect = 4e-12, Method: Composition-based stats.
Identities = 30/66 (45%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 13 LDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNY 72
L+ ++EC ICL L++A+ T CGH+FC ACI I G CP+D ++L ++ +F DN+
Sbjct: 22 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHK-CPVDNEILLENQLFPDNF 80
Query: 73 TRREIL 78
+REIL
Sbjct: 81 AKREIL 86
>pdb|1CA4|A Chain A, Structure Of Tnf Receptor Associated Factor 2 (Traf2)
pdb|1CA4|B Chain B, Structure Of Tnf Receptor Associated Factor 2 (Traf2)
pdb|1CA4|C Chain C, Structure Of Tnf Receptor Associated Factor 2 (Traf2)
pdb|1CA4|D Chain D, Structure Of Tnf Receptor Associated Factor 2 (Traf2)
pdb|1CA4|E Chain E, Structure Of Tnf Receptor Associated Factor 2 (Traf2)
pdb|1CA4|F Chain F, Structure Of Tnf Receptor Associated Factor 2 (Traf2)
pdb|1D00|A Chain A, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|B Chain B, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|C Chain C, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|D Chain D, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|E Chain E, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|F Chain F, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|G Chain G, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|H Chain H, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D0J|A Chain A, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A M4-1bb Peptide
pdb|1D0J|B Chain B, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A M4-1bb Peptide
pdb|1D0J|C Chain C, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A M4-1bb Peptide
pdb|1D0J|D Chain D, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A M4-1bb Peptide
pdb|1D0J|E Chain E, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A M4-1bb Peptide
pdb|1D0J|F Chain F, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A M4-1bb Peptide
Length = 168
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 4/111 (3%)
Query: 310 NGVYFWKMYNFPAKLKEMKEIN-RYFYSACFYSSCFGYRFCTRVNISRED---AQYLSLF 365
+GV+ WK+ +F K +E +S FY+S +GY+ C R+ ++ + +LSLF
Sbjct: 18 DGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLF 77
Query: 366 IHLVQGENDDILDWPFVGRIRFTALNTSSEFSITDEIQSDKNFDSFKRPVN 416
+++G ND +L WPF ++ L+ ++ + D + D SF+RPVN
Sbjct: 78 FVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVN 128
>pdb|1QSC|A Chain A, Crystal Structure Of The Traf Domain Of Traf2 In A Complex
With A Peptide From The Cd40 Receptor
pdb|1QSC|B Chain B, Crystal Structure Of The Traf Domain Of Traf2 In A Complex
With A Peptide From The Cd40 Receptor
pdb|1QSC|C Chain C, Crystal Structure Of The Traf Domain Of Traf2 In A Complex
With A Peptide From The Cd40 Receptor
Length = 191
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 60/111 (54%), Gaps = 4/111 (3%)
Query: 310 NGVYFWKMYNFPAKLKEMKEIN-RYFYSACFYSSCFGYRFCTRVNISRED---AQYLSLF 365
+GV+ WK+ +F K +E +S FY+S +GY+ C R+ ++ + +LSLF
Sbjct: 41 DGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKXCLRIYLNGDGTGRGTHLSLF 100
Query: 366 IHLVQGENDDILDWPFVGRIRFTALNTSSEFSITDEIQSDKNFDSFKRPVN 416
+ +G ND +L WPF ++ L+ ++ + D + D SF+RPVN
Sbjct: 101 FVVXKGPNDALLRWPFNQKVTLXLLDQNNREHVIDAFRPDVTSSSFQRPVN 151
>pdb|1FLK|A Chain A, Molecular Basis For Cd40 Signaling Mediated By Traf3
pdb|1FLK|B Chain B, Molecular Basis For Cd40 Signaling Mediated By Traf3
pdb|1FLL|A Chain A, Molecular Basis For Cd40 Signaling Mediated By Traf3
pdb|1FLL|B Chain B, Molecular Basis For Cd40 Signaling Mediated By Traf3
Length = 228
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 94/208 (45%), Gaps = 20/208 (9%)
Query: 253 DCSCKTCGDNSHLLKLVYERMVLLEQSMLEQKIKVNNFELNLKQTEEIEDNVVLKLCNGV 312
D S N+ LL+ R +Q + I++ + +L + E NGV
Sbjct: 28 DKSAGQVARNTGLLESQLSRH---DQMLSVHDIRLADMDLRFQVLETAS-------YNGV 77
Query: 313 YFWKMYNFPAKLKE-MKEINRYFYSACFYSSCFGYRFCTRVNISRED---AQYLSLFIHL 368
WK+ ++ + +E + YS FY+ FGY+ C RV ++ + +LSLF +
Sbjct: 78 LIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVI 137
Query: 369 VQGENDDILDWPFVGRIRFTALN-TSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFN 427
++GE D +L WPF ++ ++ SS + D + D N SFK+P A G
Sbjct: 138 MRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEM--NIASGCP 195
Query: 428 NFIRVADVLDPGRGFLMEDDTFVIKTQV 455
F+ VL+ G ++DDT IK V
Sbjct: 196 VFV-AQTVLE--NGTYIKDDTIFIKVIV 220
>pdb|1RF3|A Chain A, Structurally Distinct Recognition Motifs In Lymphotoxin-B
Receptor And Cd40 For Traf-Mediated Signaling
Length = 200
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 10/151 (6%)
Query: 310 NGVYFWKMYNFPAKLKE-MKEINRYFYSACFYSSCFGYRFCTRVNISRED---AQYLSLF 365
NGV WK+ ++ + +E + YS FY+ FGY+ C RV ++ + +LSLF
Sbjct: 39 NGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLF 98
Query: 366 IHLVQGENDDILDWPFVGRIRFTALN-TSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAF 424
+++GE D +L WPF ++ ++ SS + D + D N SFK+P A
Sbjct: 99 FVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEM--NIAS 156
Query: 425 GFNNFIRVADVLDPGRGFLMEDDTFVIKTQV 455
G F+ VL+ G ++DDT IK V
Sbjct: 157 GCPVFV-AQTVLE--NGTYIKDDTIFIKVIV 184
>pdb|4GHU|A Chain A, Crystal Structure Of Traf3CARDIF
Length = 198
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 10/151 (6%)
Query: 310 NGVYFWKMYNFPAKLKE-MKEINRYFYSACFYSSCFGYRFCTRVNISRED---AQYLSLF 365
NGV WK+ ++ + +E + YS FY+ FGY+ C RV ++ + +LSLF
Sbjct: 39 NGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLF 98
Query: 366 IHLVQGENDDILDWPFVGRIRFTALN-TSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAF 424
+++GE D +L WPF ++ ++ SS + D + D N SFK+P A
Sbjct: 99 FVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEM--NIAS 156
Query: 425 GFNNFIRVADVLDPGRGFLMEDDTFVIKTQV 455
G F+ VL+ G ++DDT IK V
Sbjct: 157 GCPVFV-AQTVLE--NGTYIKDDTIFIKVIV 184
>pdb|1KZZ|A Chain A, Downstream Regulator Tank Binds To The Cd40 Recognition
Site On Traf3
pdb|1L0A|A Chain A, Downstream Regulator Tank Binds To The Cd40 Recognition
Site On Traf3
pdb|1ZMS|A Chain A, Lmp1 Protein Binds To Traf3 As A Structural Cd40
pdb|2GKW|A Chain A, Key Contacts Promote Recongnito Of Baff-R By Traf3
Length = 192
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 10/151 (6%)
Query: 310 NGVYFWKMYNFPAKLKE-MKEINRYFYSACFYSSCFGYRFCTRVNISRED---AQYLSLF 365
NGV WK+ ++ + +E + YS FY+ FGY+ C RV ++ + +LSLF
Sbjct: 39 NGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLF 98
Query: 366 IHLVQGENDDILDWPFVGRIRFTALN-TSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAF 424
+++GE D +L WPF ++ ++ SS + D + D N SFK+P A
Sbjct: 99 FVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEM--NIAS 156
Query: 425 GFNNFIRVADVLDPGRGFLMEDDTFVIKTQV 455
G F+ VL+ G ++DDT IK V
Sbjct: 157 GCPVFV-AQTVLE--NGTYIKDDTIFIKVIV 184
>pdb|4GJH|A Chain A, Crystal Structure Of The Traf Domain Of Traf5
pdb|4GJH|B Chain B, Crystal Structure Of The Traf Domain Of Traf5
pdb|4GJH|C Chain C, Crystal Structure Of The Traf Domain Of Traf5
Length = 178
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 14/154 (9%)
Query: 310 NGVYFWKMYNFPAKLKEMKEINRY-FYSACFYSSCFGYRFCTRVNISRED---AQYLSLF 365
+G WK+ ++ K +E E + +S FY+S GYR C R ++ + +LSL+
Sbjct: 23 SGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLY 82
Query: 366 IHLVQGENDDILDWPFVGRIRFTALNTSSEFS-ITDEIQSDKNFDSFKRP---VNFFLNK 421
+++GE D +L WPF R+ L+ S + + I + ++D N SFKRP +N
Sbjct: 83 FVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNI---- 138
Query: 422 KAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQV 455
A G F+ + L+ + ++DDT +K V
Sbjct: 139 -ASGCPRFVSHS-TLENSKNTYIKDDTLFLKVAV 170
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 61.2 bits (147), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 13 LDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNY 72
L ++EC ICL L++A+ T CGH+FC ACI I G CP+D ++L ++ +F DN+
Sbjct: 3 LGSKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHK-CPVDNEILLENQLFPDNF 61
Query: 73 TR 74
+
Sbjct: 62 AK 63
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 52.4 bits (124), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 12 NLDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNY-CPI 57
NL CS+CLEYLK+ ++ CGH FC ACI W + +++ CP+
Sbjct: 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPV 57
>pdb|3KNV|A Chain A, Crystal Structure Of The Ring And First Zinc Finger
Domains Of Traf2
Length = 141
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 9/104 (8%)
Query: 13 LDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEK--------VLTK 64
L+ ++ CS C L+ CGH++C+ C+ S + +N + +L
Sbjct: 28 LEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILES 87
Query: 65 DDIFIDNYTRREILENNLTCPYKQCSSQLSIPEYES-HVNTCYL 107
F DN RRE+ CP C+ + ++ EYES H C L
Sbjct: 88 SSAFPDNAARREVESLPAVCPSDGCTWKGTLKEYESCHEGRCPL 131
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 13 LDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKD--DIFID 70
L+ +C IC EY +A+ +C H FC+ CI+ W+ K K CPI K + + +D
Sbjct: 50 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWM--KRKIECPICRKDIKSKTYSLVLD 107
Query: 71 NYTRREILENNLTCPYKQ 88
N + + NNL+ K+
Sbjct: 108 NXINKMV--NNLSSEVKE 123
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 13 LDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKD--DIFID 70
L+ +C IC EY +A+ +C H FC+ CI+ W+ K K CPI K + + +D
Sbjct: 50 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWM--KRKIECPICRKDIKSKTYSLVLD 107
Query: 71 NYTRREILENNLTCPYKQ 88
N + + NNL+ K+
Sbjct: 108 NCINKMV--NNLSSEVKE 123
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 13 LDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKD--DIFID 70
L+ +C IC EY +A+ +C H FC+ CI+ W+ K K CPI K + + +D
Sbjct: 61 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWM--KRKIECPICRKDIKSKTYSLVLD 118
Query: 71 NYTRREILENNLTCPYKQ 88
N + + NNL+ K+
Sbjct: 119 NCINKMV--NNLSSEVKE 134
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 17 FECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNYTRRE 76
C IC L D + TSC H FC CI + V G +YCP D+ +
Sbjct: 24 ISCQICEHILADPVETSCKHLFCRICILRCLKVMG-SYCPSCRYPCFPTDLESPVKSFLN 82
Query: 77 ILENNLT-CPYKQCSSQLSIPEYESHVNT 104
IL + + CP + C+ ++S+ +Y HV++
Sbjct: 83 ILNSLMVKCPAQDCNEEVSLEKYNHHVSS 111
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 17 FECSICLEYLKDAILTSCGHKFCAACIDSWIDV-KGKNYCPIDEKVLTKDDI 67
EC ICLE +K+ + T C H FC C+ ++ KG + CP+ + +TK +
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 12 NLDPRFECSICLEYLKDAILTSCGHKFCAACI-----DSWIDVKGKNYCPI 57
N+ C ICLE L + + CGH C ACI ++ + GK+ CP+
Sbjct: 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPV 58
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 11 LNLDPRFECSICLEYLKDAILTSCGHKFCAACI-----DSWIDVKGKNYCPI 57
+N+ C ICLE L + CGH FC AC+ S +D KG++ CP+
Sbjct: 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLD-KGESSCPV 64
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 13 LDPRFECSICLEYLKDA----ILTSCGHKFCAACIDSWIDVKGKNYCPI 57
+D EC++CL L+D L CGH F A C+D W+ + CP+
Sbjct: 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG--SHSTCPL 48
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 19 CSICLEYLKDAILTSCGHKFCAACI----DSWIDVKGKNYCPI 57
C ICLE LK+ + C H FC ACI +S + GK CP+
Sbjct: 22 CPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPV 64
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 18 ECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPI 57
EC IC++ D IL C H FC CID W D + +N CPI
Sbjct: 17 ECCICMDGRADLIL-PCAHSFCQKCIDKWSD-RHRN-CPI 53
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 19 CSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCP 56
C IC E KD + CGH C +C+ SW + +G+ CP
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQG-CP 371
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 19 CSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCP 56
C IC E KD + CGH C +C+ SW + +G+ CP
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQG-CP 373
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 19 CSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCP 56
C IC E KD + CGH C +C+ SW + +G+ CP
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQG-CP 373
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 19 CSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCP 56
C IC E KD + CGH C +C+ SW + +G+ CP
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQG-CP 371
>pdb|4GWN|A Chain A, Crystal Structure Of Human Mature Meprin Beta
Length = 553
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 313 YFWKMYNFPAKLKEMKEINRYFYSACFYSSCFGYRFCTRVNISREDAQYLSLFIHLVQGE 372
+ W + NF + + N YS FYSS GY F +N++ ++ HL+ G
Sbjct: 369 HIWHIRNF---TQFIGSPNGTLYSPPFYSSK-GYAFQIYLNLAH--VTNAGIYFHLISGA 422
Query: 373 NDDILDWP 380
NDD L WP
Sbjct: 423 NDDQLQWP 430
>pdb|4GWM|A Chain A, Crystal Structure Of Human Promeprin Beta
pdb|4GWM|B Chain B, Crystal Structure Of Human Promeprin Beta
Length = 592
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 313 YFWKMYNFPAKLKEMKEINRYFYSACFYSSCFGYRFCTRVNISREDAQYLSLFIHLVQGE 372
+ W + NF + + N YS FYSS GY F +N++ ++ HL+ G
Sbjct: 408 HIWHIRNF---TQFIGSPNGTLYSPPFYSSK-GYAFQIYLNLAH--VTNAGIYFHLISGA 461
Query: 373 NDDILDWP 380
NDD L WP
Sbjct: 462 NDDQLQWP 469
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 19 CSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDE-KVLTKDDIFIDNYTRR 75
C IC E KD + CGH C +C+ SW + +G+ CP ++ + I +D + R
Sbjct: 27 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQG-CPFCRCEIKGTEPIVVDPFDPR 83
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
An Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 17 FECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNYTRRE 76
F C I LE +KD ++ S G + + I W+D G CP ++ L + NY +
Sbjct: 9 FRCPISLELMKDPVIVSTGQTYERSSIQKWLDA-GHKTCPKSQETLLHAGL-TPNYVLKS 66
Query: 77 IL 78
++
Sbjct: 67 LI 68
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 19 CSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCP 56
C IC E KD + CGH C +C+ +W + G+ CP
Sbjct: 341 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQG-CP 377
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 37.4 bits (85), Expect = 0.018, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 19 CSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCP 56
C IC E KD + CGH C +C+ +W + G+ CP
Sbjct: 29 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQG-CP 65
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 19 CSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCP 56
C IC E KD + CGH C +C+ SW + +G+ CP
Sbjct: 30 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQG-CP 66
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 36.2 bits (82), Expect = 0.040, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 13 LDPRFECSICLEYLKDAI-LTSCGHKFCAACIDSWIDVKGKNYCPI 57
L+P C +C Y DA + C H FC CI +++ YCPI
Sbjct: 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET--SKYCPI 55
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 12 NLDPRFECSICLEYLKDAILTS-CGHKFCAACIDSWIDVKGKNYCPI-DEKVLTKDDIFI 69
+L C ICL+ LK+ + T C H+FCA CI + + G CP +K+++K +
Sbjct: 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALR-SGNKECPTCRKKLVSKRSLRP 108
Query: 70 D 70
D
Sbjct: 109 D 109
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 36.2 bits (82), Expect = 0.044, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 13 LDPRFECSICLEYLKDAI-LTSCGHKFCAACIDSWIDVKGKNYCPI 57
L+P C +C Y DA + C H FC CI +++ YCPI
Sbjct: 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET--SKYCPI 55
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 12 NLDPRFECSICLEYLKDAILTS-CGHKFCAACIDSWIDVKGKNYCPIDEKVL 62
+L C ICL+ LK+ + T C H+FCA CI + + G CP K L
Sbjct: 49 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALR-SGNKECPTCRKKL 99
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 13 LDPRFECSICLEYLKDAI-LTSCGHKFCAACIDSWIDVKGKNYCPI 57
L+P C +C Y DA + C H FC CI +++ YCPI
Sbjct: 8 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET--SKYCPI 51
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 12 NLDPRFECSICLEYLKDA-ILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDI 67
+D C IC EY A I+ C H +C+ CI ++ K + CP +T+ D+
Sbjct: 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQ--CPTCCVTVTEPDL 72
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 12 NLDPRFECSICLEYLKDAILTS-CGHKFCAACIDSWIDVKGKNYCPIDEKVLT 63
+L C ICL+ LK+ + T C H+FCA CI + + G CP K L
Sbjct: 30 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALR-SGNKECPTCRKKLV 81
>pdb|2DJB|A Chain A, Solution Structure Of The Ring Domain Of The Human
Polycomb Group Ring Finger Protein 6
Length = 72
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 13 LDPRFECSICLEYLKDAI-LTSCGHKFCAACI 43
L P CSIC YL DA +T C H FC +CI
Sbjct: 12 LTPYILCSICKGYLIDATTITECLHTFCKSCI 43
>pdb|2F1X|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
pdb|2F1X|B Chain B, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
Length = 161
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 410 SFKRPVN--FFLNKKAFGFNNFIRVADVLDPGRGFLMEDD-TFVIKTQV 455
SF R ++ FF + +GF+NF+ ++V DP +GF+ +D TF + Q
Sbjct: 101 SFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQA 149
>pdb|2F1Y|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A Mdm2 Peptide
Length = 159
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 410 SFKRPVN--FFLNKKAFGFNNFIRVADVLDPGRGFLMEDD-TFVIKTQV 455
SF R ++ FF + +GF+NF+ ++V DP +GF+ +D TF + Q
Sbjct: 101 SFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQA 149
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp
pdb|2F1Z|B Chain B, Crystal Structure Of Hausp
Length = 522
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 410 SFKRPVN--FFLNKKAFGFNNFIRVADVLDPGRGFLMEDD-TFVIKTQV 455
SF R ++ FF + +GF+NF+ ++V DP +GF+ +D TF + Q
Sbjct: 111 SFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQA 159
>pdb|2F1W|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Length = 158
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 410 SFKRPVN--FFLNKKAFGFNNFIRVADVLDPGRGFLMEDD-TFVIKTQV 455
SF R ++ FF + +GF+NF+ ++V DP +GF+ +D TF + Q
Sbjct: 101 SFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQA 149
>pdb|1YY6|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With An Ebna1 Peptide
pdb|1YZE|A Chain A, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|B Chain B, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|C Chain C, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|2FOJ|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 364-367
pdb|2FOO|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 359-362
pdb|2FOP|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With Mdm2 Peptide 147-150
pdb|3MQR|A Chain A, Crystal Structure Of The Usp7:hdmx(Ahss) Complex
pdb|3MQS|C Chain C, Crystal Structure Of The Usp7:hdm2(Psts) Complex
Length = 155
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 410 SFKRPVN--FFLNKKAFGFNNFIRVADVLDPGRGFLMEDD-TFVIKTQV 455
SF R ++ FF + +GF+NF+ ++V DP +GF+ +D TF + Q
Sbjct: 99 SFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQA 147
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 18 ECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNYTRREI 77
+C IC+E L + + C H C C S ++ K CP + ++ + +TRR
Sbjct: 17 QCGICMEILVEPVTLPCNHTLCKPCFQSTVE-KASLCCPFCRRRVSS---WTRYHTRRNS 72
Query: 78 LEN 80
L N
Sbjct: 73 LVN 75
>pdb|2XXN|A Chain A, Structure Of The Virf4-Hausp Traf Domain Complex
Length = 143
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 410 SFKRPVN--FFLNKKAFGFNNFIRVADVLDPGRGFLMEDD-TFVIKTQV 455
SF R ++ FF + +GF+NF+ ++V DP +GF+ +D TF + Q
Sbjct: 87 SFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQA 135
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 19 CSICLEYLKDAILTSCGHKFCAACIDSWIDVK-GKNYCPIDEKVLTKDDI 67
C ICL+ L+ + CGH FC CI + G CP+ + + K+ I
Sbjct: 23 CPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72
>pdb|2CSY|A Chain A, Solution Structure Of The Ring Domain Of The Zinc Finger
Protein 183-Like 1
Length = 81
Score = 31.6 bits (70), Expect = 0.96, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 17 FECSICLEYLKDAILTSCGHKFCAAC 42
F C IC + ++ ++T C H FC +C
Sbjct: 16 FRCFICRQAFQNPVVTKCRHYFCESC 41
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 6/39 (15%)
Query: 19 CSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPI 57
C +CL+ + CGH CA C G CPI
Sbjct: 16 CKVCLDRAVSIVFVPCGHLVCAEC------APGLQLCPI 48
>pdb|3RD8|A Chain A, Crystal Structure Of Fumarate Hydratase Class Ii
Mycobacterium Smegmatis
Length = 489
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 121 PTSSFRNTSGIPTNKRNSKILT-------VTVFP-EHLNMQGSSNENFPCKFY 165
P F+ SG +N ++++ VTV P +H+NM SSN+ FP +
Sbjct: 115 PIDVFQTGSGTSSNMNTNEVIASIAAANGVTVHPNDHVNMSQSSNDTFPTATH 167
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 19 CSICLEYLKDAILTSCGHKFCAACI 43
C ICL+ L+ + CGH FC CI
Sbjct: 23 CPICLDILQKPVTIDCGHNFCLKCI 47
>pdb|3ZTG|A Chain A, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
pdb|3ZTG|B Chain B, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
Length = 92
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 19 CSICLEYLKDAI-LTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNYTRREI 77
C IC + + DA+ + CG+ +C CI + + ++ CP + D I N R+
Sbjct: 16 CLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQA 75
Query: 78 LEN 80
+ N
Sbjct: 76 VNN 78
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 18 ECSICLEYLKDAILTSCGHKFCAACID--SWI 47
EC+ICL+ + C H FC C+ SW+
Sbjct: 17 ECAICLQTCVHPVSLPCKHVFCYLCVKGASWL 48
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 29.6 bits (65), Expect = 3.4, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 19 CSICLEYLKD-AILTSCGHKFCAACIDSWIDVKGKNYCPI 57
C ICLE + ++ C H FC CI WI + CP+
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWI--RQNPTCPL 45
>pdb|2ECY|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger)" Domain Of Tnf Receptor-Associated Factor 3
Length = 66
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 12 NLDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIF 68
++ +++C C L T CGH+FC +C+ + + C ++ + KD +F
Sbjct: 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPK-CTACQESIVKDKVF 66
>pdb|1Z6U|A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
pdb|1Z6U|B Chain B, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
Length = 150
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 12/74 (16%)
Query: 13 LDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVK-----------GKNYCPIDEKV 61
L+ F C C E + + T C H C C+ + G+NY I ++
Sbjct: 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEI 134
Query: 62 L-TKDDIFIDNYTR 74
L T D+F Y++
Sbjct: 135 LQTLLDLFFPGYSK 148
>pdb|3LRQ|A Chain A, Crystal Structure Of The U-Box Domain Of Human
Ubiquitin- Protein Ligase (E3), Northeast Structural
Genomics Consortium Target Hr4604d.
pdb|3LRQ|B Chain B, Crystal Structure Of The U-Box Domain Of Human
Ubiquitin- Protein Ligase (E3), Northeast Structural
Genomics Consortium Target Hr4604d.
pdb|3LRQ|C Chain C, Crystal Structure Of The U-Box Domain Of Human
Ubiquitin- Protein Ligase (E3), Northeast Structural
Genomics Consortium Target Hr4604d.
pdb|3LRQ|D Chain D, Crystal Structure Of The U-Box Domain Of Human
Ubiquitin- Protein Ligase (E3), Northeast Structural
Genomics Consortium Target Hr4604d
Length = 100
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 17 FECSICLEYLKDAILTS-CGHKFCAACIDSWIDVKGKNYCP 56
F C IC E L+DA L C C +CI W+ + + CP
Sbjct: 23 FRCFICXEKLRDARLCPHCSKLCCFSCIRRWL-TEQRAQCP 62
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 22/138 (15%)
Query: 313 YFWKMYNFPAKLKEMKEINRYFYSACFYSSCFG-YRFCTRVN---ISREDAQYLSLFIHL 368
Y W + NF +EM E+ + S+ F S ++C RVN + E YLSL++ L
Sbjct: 9 YMWTINNFSFCREEMGEVIK---SSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLL 65
Query: 369 VQGENDDILDWPFVGRIRFTALNTSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNN 428
V ++ + +F+ LN E T ++S + + F+ K +GF
Sbjct: 66 VSCPKSEVR-----AKFKFSILNAKGE--ETKAMESQRAYR--------FVQGKDWGFKK 110
Query: 429 FIRVADVLDPGRGFLMED 446
FIR +LD G L +D
Sbjct: 111 FIRRGFLLDEANGLLPDD 128
>pdb|3NXD|C Chain C, Jc Polyomavirus Vp1 In Complex With Lstc
pdb|3NXD|B Chain B, Jc Polyomavirus Vp1 In Complex With Lstc
pdb|3NXD|A Chain A, Jc Polyomavirus Vp1 In Complex With Lstc
pdb|3NXD|D Chain D, Jc Polyomavirus Vp1 In Complex With Lstc
pdb|3NXD|E Chain E, Jc Polyomavirus Vp1 In Complex With Lstc
pdb|3NXG|A Chain A, Jc Polyomavirus Vp1
pdb|3NXG|B Chain B, Jc Polyomavirus Vp1
pdb|3NXG|C Chain C, Jc Polyomavirus Vp1
pdb|3NXG|D Chain D, Jc Polyomavirus Vp1
pdb|3NXG|E Chain E, Jc Polyomavirus Vp1
Length = 272
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 18/97 (18%)
Query: 149 HLNMQGSSNENFPCKFYQVGCREVFKSQALLEKHYDLKTSFHLELLFNKYCSDGSQSTNT 208
H N G + F+ VG E + Q +L ++ +T + +F K + SQ NT
Sbjct: 111 HDNGAGKPVQGTSFHFFSVGG-EALELQGVL---FNYRTKYPDGTIFPKNATVQSQVMNT 166
Query: 209 PSHGRQDTSNQKEIEAYLMKNKEHESKLW--DPNKNQ 243
E +AYL KNK + + W DP +N+
Sbjct: 167 ------------EHKAYLDKNKAYPVECWVPDPTRNE 191
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 28.9 bits (63), Expect = 6.8, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 19 CSICLEYLK---DAILTSCGHKFCAACIDSWIDVKGKNYCPI 57
C++CLE K + + C H F C+ W++V + CP+
Sbjct: 18 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV--RKVCPL 57
>pdb|2YUR|A Chain A, Solution Structure Of The Ring Finger Of Human
Retinoblastoma-Binding Protein 6
Length = 74
Score = 28.5 bits (62), Expect = 7.4, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 19 CSICLEYLKDAI-LTSCGHKFCAACIDSWIDVKGKNYCP 56
C IC + + DA+ + CG+ +C CI + + ++ CP
Sbjct: 18 CLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCP 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,042,985
Number of Sequences: 62578
Number of extensions: 590083
Number of successful extensions: 1414
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1320
Number of HSP's gapped (non-prelim): 87
length of query: 460
length of database: 14,973,337
effective HSP length: 102
effective length of query: 358
effective length of database: 8,590,381
effective search space: 3075356398
effective search space used: 3075356398
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)