Query psy7814
Match_columns 460
No_of_seqs 316 out of 2486
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 19:29:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7814.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7814hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1flk_A TNF receptor associated 100.0 5.1E-41 1.7E-45 313.6 20.6 207 158-459 8-224 (228)
2 4ghu_A TNF receptor-associated 100.0 1.7E-38 5.8E-43 289.6 19.8 180 275-459 4-188 (198)
3 2gkw_A TNF receptor-associated 100.0 2.8E-38 9.6E-43 287.6 20.7 180 274-458 3-187 (192)
4 1ca9_A TRAF2, protein (TNF rec 100.0 2.2E-35 7.6E-40 269.0 19.8 173 282-459 14-191 (192)
5 1lb6_A TNF receptor-associated 100.0 8.7E-35 3E-39 257.4 17.9 148 308-459 2-157 (160)
6 4gjh_A TNF receptor-associated 100.0 1.4E-34 4.8E-39 260.3 18.3 161 293-458 6-173 (178)
7 1d00_A Tumor necrosis factor r 100.0 1.3E-33 4.5E-38 251.9 16.6 158 297-459 5-167 (168)
8 3hcs_A TNF receptor-associated 99.9 8.3E-27 2.8E-31 208.2 10.5 148 10-186 12-159 (170)
9 4gwm_A Meprin A subunit beta; 99.9 1.2E-25 4E-30 233.6 10.3 140 312-460 407-568 (592)
10 3ivv_A Speckle-type POZ protei 99.9 2.1E-25 7.1E-30 193.8 9.8 132 307-459 7-144 (145)
11 2foj_A Ubiquitin carboxyl-term 99.9 6.7E-23 2.3E-27 180.0 11.3 129 308-459 16-149 (155)
12 3hqi_A Speckle-type POZ protei 99.8 6.1E-21 2.1E-25 186.9 9.8 132 308-458 4-139 (312)
13 3hct_A TNF receptor-associated 99.8 2.3E-20 8E-25 155.8 8.4 101 10-111 12-112 (118)
14 3knv_A TNF receptor-associated 99.8 4.6E-20 1.6E-24 158.4 3.1 98 11-109 26-133 (141)
15 1rmd_A RAG1; V(D)J recombinati 99.7 1.1E-18 3.9E-23 145.2 4.0 96 12-108 19-115 (116)
16 2f1z_A Ubiquitin carboxyl-term 99.7 6.2E-18 2.1E-22 176.9 7.4 128 308-458 28-160 (522)
17 2kr4_A Ubiquitin conjugation f 99.4 5.1E-13 1.7E-17 104.1 7.2 70 9-80 7-76 (85)
18 3ztg_A E3 ubiquitin-protein li 99.4 6E-13 2E-17 105.5 7.5 76 6-81 3-80 (92)
19 1wgm_A Ubiquitin conjugation f 99.4 8.2E-13 2.8E-17 105.6 6.9 71 9-81 15-86 (98)
20 1t1h_A Gspef-atpub14, armadill 99.4 5.6E-13 1.9E-17 102.3 5.5 69 11-80 3-71 (78)
21 2kre_A Ubiquitin conjugation f 99.3 9.5E-13 3.2E-17 105.7 6.3 71 9-81 22-92 (100)
22 2yur_A Retinoblastoma-binding 99.3 6.2E-12 2.1E-16 95.3 6.3 57 8-64 7-64 (74)
23 2ecy_A TNF receptor-associated 99.2 9.9E-12 3.4E-16 91.9 6.1 58 9-67 8-65 (66)
24 2yu4_A E3 SUMO-protein ligase 99.2 8E-12 2.8E-16 99.3 6.0 71 11-81 2-80 (94)
25 2djb_A Polycomb group ring fin 99.2 1.8E-11 6E-16 92.3 6.5 60 7-68 6-66 (72)
26 2csy_A Zinc finger protein 183 99.2 2.1E-11 7.2E-16 94.1 7.2 68 9-79 8-75 (81)
27 2ecw_A Tripartite motif-contai 99.2 2.3E-11 8E-16 94.5 5.9 64 8-71 11-78 (85)
28 2ysl_A Tripartite motif-contai 99.2 2.9E-11 9.8E-16 91.3 5.6 58 9-66 13-71 (73)
29 2egp_A Tripartite motif-contai 99.2 7.5E-12 2.6E-16 96.1 2.0 63 9-71 5-72 (79)
30 2f42_A STIP1 homology and U-bo 99.2 3.1E-11 1E-15 106.5 6.1 71 10-81 100-170 (179)
31 2ecv_A Tripartite motif-contai 99.2 3.4E-11 1.2E-15 93.6 5.7 63 9-71 12-78 (85)
32 3lrq_A E3 ubiquitin-protein li 99.1 1.5E-11 5E-16 99.0 3.3 61 12-73 18-79 (100)
33 2y43_A E3 ubiquitin-protein li 99.1 1.4E-11 4.9E-16 98.9 2.6 66 12-79 18-84 (99)
34 3fl2_A E3 ubiquitin-protein li 99.1 2.6E-11 8.9E-16 101.6 4.2 67 12-79 48-115 (124)
35 2ysj_A Tripartite motif-contai 99.1 9.8E-11 3.4E-15 85.6 6.1 50 9-58 13-63 (63)
36 2d8t_A Dactylidin, ring finger 99.1 3.2E-11 1.1E-15 90.6 3.4 57 8-66 7-63 (71)
37 2c2l_A CHIP, carboxy terminus 99.1 9.5E-11 3.3E-15 112.3 6.7 71 10-81 202-272 (281)
38 1z6u_A NP95-like ring finger p 99.1 4.8E-11 1.6E-15 103.2 3.8 66 13-79 75-140 (150)
39 3ng2_A RNF4, snurf, ring finge 99.1 9E-11 3.1E-15 88.0 4.7 57 11-69 5-68 (71)
40 2ct2_A Tripartite motif protei 99.1 1.9E-10 6.6E-15 90.0 6.7 59 7-65 6-69 (88)
41 2ckl_A Polycomb group ring fin 99.1 7.7E-11 2.6E-15 96.2 4.5 65 12-78 11-80 (108)
42 4ayc_A E3 ubiquitin-protein li 99.1 3.3E-11 1.1E-15 102.9 1.8 49 14-64 51-99 (138)
43 2ea6_A Ring finger protein 4; 99.0 2.1E-10 7.2E-15 85.4 5.5 55 8-64 7-68 (69)
44 3l11_A E3 ubiquitin-protein li 99.0 4.8E-11 1.6E-15 98.6 2.0 54 10-64 9-62 (115)
45 2ckl_B Ubiquitin ligase protei 99.0 1.5E-10 5.2E-15 102.0 4.7 70 11-81 49-120 (165)
46 2ecj_A Tripartite motif-contai 99.0 3.1E-10 1.1E-14 81.4 5.2 52 7-58 6-58 (58)
47 1g25_A CDK-activating kinase a 99.0 1.9E-10 6.7E-15 84.6 3.9 54 15-69 2-60 (65)
48 2xeu_A Ring finger protein 4; 99.0 2.7E-10 9.3E-15 83.4 3.7 52 15-68 2-60 (64)
49 1jm7_A BRCA1, breast cancer ty 99.0 3E-10 1E-14 93.2 3.6 59 13-71 18-77 (112)
50 1jm7_B BARD1, BRCA1-associated 98.9 1.3E-10 4.4E-15 96.3 1.2 63 12-78 18-81 (117)
51 1e4u_A Transcriptional repress 98.9 9.4E-10 3.2E-14 83.8 5.2 58 8-66 3-64 (78)
52 2ect_A Ring finger protein 126 98.9 1.1E-09 3.8E-14 83.6 5.3 60 8-69 7-69 (78)
53 3htk_C E3 SUMO-protein ligase 98.9 1E-09 3.4E-14 101.5 4.2 67 12-78 177-246 (267)
54 2ecn_A Ring finger protein 141 98.8 9.2E-10 3.1E-14 82.2 2.1 55 7-64 6-60 (70)
55 2kiz_A E3 ubiquitin-protein li 98.8 4.7E-09 1.6E-13 78.0 5.7 54 9-64 7-63 (69)
56 2ep4_A Ring finger protein 24; 98.8 4.5E-09 1.6E-13 79.3 5.2 54 9-64 8-64 (74)
57 1bor_A Transcription factor PM 98.8 1.5E-09 5.2E-14 77.2 2.1 46 14-64 4-49 (56)
58 1iym_A EL5; ring-H2 finger, ub 98.8 3.1E-09 1.1E-13 75.2 3.6 49 13-63 2-54 (55)
59 2ecm_A Ring finger and CHY zin 98.8 4E-09 1.4E-13 74.6 4.1 47 15-63 4-54 (55)
60 1chc_A Equine herpes virus-1 r 98.8 3.7E-09 1.3E-13 78.3 4.0 48 15-64 4-52 (68)
61 2l0b_A E3 ubiquitin-protein li 98.7 7.2E-09 2.4E-13 81.6 4.6 51 12-64 36-89 (91)
62 4ap4_A E3 ubiquitin ligase RNF 98.7 4.9E-09 1.7E-13 88.5 3.8 53 13-67 4-63 (133)
63 1x4j_A Ring finger protein 38; 98.7 7.4E-09 2.5E-13 78.4 4.4 51 12-64 19-72 (75)
64 2bay_A PRE-mRNA splicing facto 98.7 7.3E-09 2.5E-13 74.8 3.3 54 16-71 3-57 (61)
65 2yuc_A TNF receptor-associated 98.6 2.4E-08 8.3E-13 75.7 3.9 64 96-186 3-66 (76)
66 1v87_A Deltex protein 2; ring- 98.6 4.5E-08 1.5E-12 80.4 4.6 50 15-64 24-94 (114)
67 4ap4_A E3 ubiquitin ligase RNF 98.5 3.9E-08 1.3E-12 82.8 3.6 54 14-69 70-130 (133)
68 4ic3_A E3 ubiquitin-protein li 98.5 2.1E-08 7.2E-13 75.6 1.3 47 12-64 20-67 (74)
69 2ecl_A Ring-box protein 2; RNF 98.4 1.2E-07 4.1E-12 72.7 3.4 49 15-65 14-77 (81)
70 2vje_A E3 ubiquitin-protein li 98.4 1.1E-07 3.8E-12 69.4 2.8 49 14-64 6-57 (64)
71 2ecg_A Baculoviral IAP repeat- 98.4 5.9E-08 2E-12 73.3 1.1 46 13-64 22-68 (75)
72 2y1n_A E3 ubiquitin-protein li 98.4 1.9E-07 6.5E-12 91.8 4.2 49 16-65 332-380 (389)
73 2vje_B MDM4 protein; proto-onc 98.3 2E-07 6.9E-12 67.8 2.7 48 15-64 6-56 (63)
74 2yre_A F-box only protein 30; 98.3 3.5E-07 1.2E-11 71.3 2.9 50 135-187 42-91 (100)
75 1wim_A KIAA0161 protein; ring 98.2 3.2E-07 1.1E-11 72.5 1.7 50 15-64 4-66 (94)
76 2ea5_A Cell growth regulator w 98.2 9.5E-07 3.3E-11 65.2 3.3 46 13-64 12-58 (68)
77 3dpl_R Ring-box protein 1; ubi 98.2 1.3E-06 4.5E-11 70.4 4.2 47 16-64 37-101 (106)
78 2yho_A E3 ubiquitin-protein li 98.2 2E-07 6.9E-12 71.0 -0.7 46 13-64 15-61 (79)
79 2yuc_A TNF receptor-associated 98.1 1.8E-06 6.1E-11 65.2 3.7 60 80-164 15-75 (76)
80 2d8s_A Cellular modulator of i 98.0 8.3E-06 2.9E-10 62.0 5.9 55 11-65 10-71 (80)
81 3t6p_A Baculoviral IAP repeat- 97.9 1.5E-06 5E-11 85.0 0.4 46 13-64 292-338 (345)
82 4a0k_B E3 ubiquitin-protein li 97.8 3E-06 1E-10 69.3 0.0 45 17-63 49-111 (117)
83 3vk6_A E3 ubiquitin-protein li 97.7 2.6E-05 8.9E-10 60.5 3.7 79 18-105 3-84 (101)
84 2ct0_A Non-SMC element 1 homol 97.5 0.00012 4.2E-09 54.4 5.2 51 14-64 13-64 (74)
85 2d9k_A FLN29 gene product; zin 97.0 9.1E-05 3.1E-09 55.5 -0.4 62 96-186 3-65 (75)
86 1vyx_A ORF K3, K3RING; zinc-bi 96.9 0.00091 3.1E-08 47.6 3.9 48 16-63 6-58 (60)
87 2yre_A F-box only protein 30; 96.3 0.0011 3.8E-08 51.6 1.5 54 81-153 37-90 (100)
88 3m62_A Ubiquitin conjugation f 96.1 0.0058 2E-07 66.3 6.0 68 11-80 886-954 (968)
89 3k1l_B Fancl; UBC, ring, RWD, 96.0 0.0023 7.7E-08 61.3 2.3 51 14-64 306-373 (381)
90 2a25_A Ubiquitin ligase SIAH1; 95.8 0.0027 9.4E-08 56.6 1.7 36 78-113 3-40 (193)
91 3hcs_A TNF receptor-associated 95.1 0.0081 2.8E-07 52.3 2.1 51 80-154 109-160 (170)
92 2d9k_A FLN29 gene product; zin 94.1 0.011 3.7E-07 43.9 0.5 49 81-153 17-65 (75)
93 3nw0_A Non-structural maintena 93.9 0.038 1.3E-06 50.8 3.9 49 16-64 180-229 (238)
94 2jun_A Midline-1; B-BOX, TRIM, 93.7 0.03 1E-06 44.0 2.5 33 15-47 2-37 (101)
95 2cs3_A Protein C14ORF4, MY039 93.5 0.083 2.8E-06 38.8 4.1 68 12-80 11-86 (93)
96 3i2d_A E3 SUMO-protein ligase 90.5 0.44 1.5E-05 46.2 6.6 67 14-80 247-316 (371)
97 2eod_A TNF receptor-associated 88.9 0.2 6.8E-06 35.4 2.2 44 136-185 15-59 (66)
98 2ko5_A Ring finger protein Z; 88.2 0.27 9.2E-06 37.4 2.5 51 11-64 23-73 (99)
99 4fo9_A E3 SUMO-protein ligase 87.6 0.66 2.3E-05 44.8 5.5 68 12-79 211-281 (360)
100 1weo_A Cellulose synthase, cat 83.7 1.4 4.9E-05 33.1 4.4 48 16-64 16-70 (93)
101 2i13_A AART; DNA binding, zinc 76.7 2.4 8.3E-05 36.5 4.5 45 136-185 138-183 (190)
102 1m3v_A FLIN4, fusion of the LI 70.9 2.5 8.6E-05 34.0 2.9 49 16-66 32-83 (122)
103 1deq_A Fibrinogen (alpha chain 69.8 25 0.00085 33.8 9.7 36 263-298 112-147 (390)
104 1tf6_A Protein (transcription 65.3 7.5 0.00026 33.3 5.0 41 142-185 118-158 (190)
105 2dlq_A GLI-kruppel family memb 65.0 4.9 0.00017 31.5 3.5 45 136-185 71-116 (124)
106 2oqq_A Transcription factor HY 63.9 19 0.00064 22.8 5.1 24 267-290 6-29 (42)
107 1ci6_A Transcription factor AT 61.7 30 0.001 24.1 6.7 36 266-301 25-60 (63)
108 3ghg_A Fibrinogen alpha chain; 59.9 7.7 0.00026 38.9 4.3 34 268-301 114-147 (562)
109 2l5g_B Putative uncharacterize 58.5 32 0.0011 21.8 5.5 32 268-299 6-37 (42)
110 1ubd_C Protein (YY1 zinc finge 56.5 11 0.00036 29.6 4.0 46 137-185 70-116 (124)
111 2jp9_A Wilms tumor 1; DNA bind 55.8 9.6 0.00033 29.5 3.7 47 136-185 71-118 (119)
112 1t2k_D Cyclic-AMP-dependent tr 54.8 45 0.0015 22.9 6.6 35 265-299 23-57 (61)
113 2rpc_A Zinc finger protein ZIC 54.7 57 0.002 26.3 8.6 46 137-185 98-144 (155)
114 1rmd_A RAG1; V(D)J recombinati 53.8 4.5 0.00016 32.0 1.3 26 158-186 87-112 (116)
115 1z2q_A LM5-1; membrane protein 52.9 14 0.0005 27.4 4.0 31 15-45 20-54 (84)
116 2vy4_A U11/U12 small nuclear r 52.9 12 0.0004 23.2 2.8 30 157-190 3-32 (37)
117 2a25_A Ubiquitin ligase SIAH1; 52.6 2.9 0.0001 36.8 0.0 48 135-185 14-61 (193)
118 1hjb_A Ccaat/enhancer binding 51.2 49 0.0017 24.8 6.6 39 267-305 39-77 (87)
119 1rut_X Flinc4, fusion protein 50.2 5.8 0.0002 34.5 1.6 48 15-64 31-81 (188)
120 2gli_A Protein (five-finger GL 49.8 21 0.00073 29.0 5.1 83 80-185 66-152 (155)
121 2jne_A Hypothetical protein YF 49.6 0.93 3.2E-05 34.7 -3.1 41 17-64 33-73 (101)
122 3nmd_A CGMP dependent protein 49.4 51 0.0017 23.7 6.1 23 277-299 32-54 (72)
123 1m1j_A Fibrinogen alpha subuni 48.9 28 0.00097 34.2 6.2 36 157-200 41-76 (491)
124 2xjy_A Rhombotin-2; oncoprotei 48.8 9 0.00031 30.9 2.4 48 15-64 28-78 (131)
125 1y02_A CARP2, FYVE-ring finger 48.6 8.8 0.0003 30.8 2.3 49 10-60 13-65 (120)
126 1wff_A Riken cDNA 2810002D23 p 48.2 17 0.00057 27.2 3.5 51 15-70 24-76 (85)
127 2xqn_T Testin, TESS; metal-bin 47.7 8.6 0.00029 30.8 2.1 46 15-64 29-75 (126)
128 1ytz_T Troponin T; muscle, THI 47.7 58 0.002 25.4 6.8 44 261-304 46-89 (107)
129 1kd8_A GABH AIV, GCN4 acid bas 47.0 29 0.001 21.1 3.7 27 268-294 5-31 (36)
130 1j1d_B Troponin T, TNT; THIN f 46.8 59 0.002 25.3 6.7 43 262-304 47-89 (106)
131 3he5_B Synzip2; heterodimeric 46.3 53 0.0018 20.7 5.8 31 269-299 8-38 (52)
132 2eod_A TNF receptor-associated 46.0 8.5 0.00029 26.5 1.6 47 88-155 15-62 (66)
133 2akf_A Coronin-1A; coiled coil 45.8 42 0.0014 19.3 4.7 24 275-298 3-26 (32)
134 2pnv_A Small conductance calci 45.0 38 0.0013 21.7 4.4 12 268-279 13-24 (43)
135 3mq7_A Bone marrow stromal ant 45.0 65 0.0022 25.3 6.5 35 264-298 71-105 (121)
136 3he4_A Synzip6; heterodimeric 44.9 59 0.002 20.8 5.5 32 268-299 21-52 (56)
137 2wt7_A Proto-oncogene protein 44.7 75 0.0026 22.0 6.7 34 266-299 25-58 (63)
138 2ct7_A Ring finger protein 31; 43.6 12 0.00043 27.9 2.3 29 18-46 27-61 (86)
139 1vfy_A Phosphatidylinositol-3- 42.6 18 0.00061 26.1 2.9 29 16-44 11-43 (73)
140 3c3f_A Alpha/beta peptide with 42.5 52 0.0018 19.7 4.3 17 269-285 6-22 (34)
141 3mjh_B Early endosome antigen 42.2 3.9 0.00013 25.0 -0.6 16 16-31 5-20 (34)
142 2rgt_A Fusion of LIM/homeobox 41.2 25 0.00087 29.7 4.2 46 15-64 32-77 (169)
143 1kd8_A GABH AIV, GCN4 acid bas 40.2 61 0.0021 19.7 4.9 24 275-298 5-28 (36)
144 1jnm_A Proto-oncogene C-JUN; B 40.0 40 0.0014 23.3 4.3 32 266-297 24-55 (62)
145 2oxj_A Hybrid alpha/beta pepti 39.7 59 0.002 19.5 4.2 23 268-290 5-27 (34)
146 1kd8_B GABH BLL, GCN4 acid bas 38.9 65 0.0022 19.6 5.7 25 268-292 5-29 (36)
147 3efg_A Protein SLYX homolog; x 38.5 80 0.0027 23.0 5.9 38 264-301 14-51 (78)
148 1gu4_A CAAT/enhancer binding p 36.9 75 0.0026 23.2 5.5 34 267-300 39-72 (78)
149 3efg_A Protein SLYX homolog; x 36.8 1.2E+02 0.0041 22.1 6.8 30 269-298 12-41 (78)
150 2yy0_A C-MYC-binding protein; 36.8 73 0.0025 21.3 5.0 25 275-299 23-47 (53)
151 3knv_A TNF receptor-associated 36.6 9.5 0.00033 31.5 0.7 27 157-186 102-129 (141)
152 2k16_A Transcription initiatio 36.6 9 0.00031 27.7 0.5 53 12-64 14-71 (75)
153 3t7l_A Zinc finger FYVE domain 36.4 34 0.0012 25.7 3.8 30 16-45 20-53 (90)
154 1wfh_A Zinc finger (AN1-like) 36.3 29 0.00098 24.4 3.0 46 13-63 12-58 (64)
155 2oqq_A Transcription factor HY 36.0 82 0.0028 19.9 6.2 26 274-299 6-31 (42)
156 2pnv_A Small conductance calci 35.7 86 0.0029 20.1 5.6 28 273-300 11-38 (43)
157 1wg2_A Zinc finger (AN1-like) 34.6 34 0.0012 24.0 3.1 47 13-64 12-59 (64)
158 2jtn_A LIM domain-binding prot 33.5 19 0.00064 30.9 2.1 14 16-29 60-73 (182)
159 2fiy_A Protein FDHE homolog; F 33.3 4.9 0.00017 38.1 -1.8 46 14-61 180-231 (309)
160 2cup_A Skeletal muscle LIM-pro 33.0 9 0.00031 29.3 -0.0 46 15-64 32-78 (101)
161 1x61_A Thyroid receptor intera 32.9 38 0.0013 23.7 3.4 33 16-48 33-66 (72)
162 3ra3_B P2F; coiled coil domain 32.1 48 0.0016 18.2 2.8 15 269-283 5-19 (28)
163 1z60_A TFIIH basal transcripti 31.9 22 0.00075 24.6 1.8 39 18-58 17-58 (59)
164 3hct_A TNF receptor-associated 31.6 8.8 0.0003 30.4 -0.3 27 158-187 81-107 (118)
165 1dvp_A HRS, hepatocyte growth 31.0 29 0.001 30.8 3.1 33 12-44 157-193 (220)
166 1j1d_C Troponin I, TNI; THIN f 30.5 1.4E+02 0.0049 24.1 6.8 44 262-305 63-106 (133)
167 2i13_A AART; DNA binding, zinc 30.1 23 0.00078 30.1 2.1 131 14-185 19-155 (190)
168 1gmj_A ATPase inhibitor; coile 29.9 1.6E+02 0.0054 21.8 6.2 26 273-298 53-78 (84)
169 2dgc_A Protein (GCN4); basic d 29.7 80 0.0027 21.9 4.5 22 268-289 34-55 (63)
170 3c3g_A Alpha/beta peptide with 29.7 92 0.0031 18.5 5.0 17 269-285 5-21 (33)
171 1gmj_A ATPase inhibitor; coile 29.6 1.6E+02 0.0054 21.8 6.2 29 277-305 50-78 (84)
172 2zqm_A Prefoldin beta subunit 29.6 1.5E+02 0.0051 22.9 6.8 43 262-304 68-110 (117)
173 2bni_A General control protein 29.6 87 0.003 18.8 3.8 15 269-283 6-20 (34)
174 1wfl_A Zinc finger protein 216 29.6 63 0.0021 23.3 3.9 26 15-40 24-50 (74)
175 3pp5_A BRK1, protein brick1; t 29.5 62 0.0021 23.3 3.9 28 269-296 43-70 (73)
176 1wfk_A Zinc finger, FYVE domai 28.9 35 0.0012 25.6 2.7 31 14-44 7-41 (88)
177 1iml_A CRIP, cysteine rich int 28.9 25 0.00086 25.0 1.9 44 15-62 26-71 (76)
178 1gd2_E Transcription factor PA 28.2 1.4E+02 0.0048 21.2 5.6 33 266-298 31-63 (70)
179 1aq5_A Matrilin-1, CMP, cartil 28.0 1.3E+02 0.0044 19.6 5.4 26 267-292 19-44 (47)
180 3m91_A Proteasome-associated A 27.7 1.4E+02 0.0047 19.9 6.7 39 264-302 9-47 (51)
181 2yw8_A RUN and FYVE domain-con 27.6 38 0.0013 24.9 2.7 29 17-45 20-52 (82)
182 2jmo_A Parkin; IBR, E3 ligase, 27.6 20 0.00069 26.3 1.1 33 16-48 25-70 (80)
183 1fxk_A Prefoldin; archaeal pro 27.5 1.7E+02 0.0059 22.1 6.7 40 262-301 63-102 (107)
184 2cur_A Skeletal muscle LIM-pro 27.3 39 0.0013 23.4 2.7 33 16-48 31-64 (69)
185 2jrp_A Putative cytoplasmic pr 27.1 4.6 0.00016 30.0 -2.5 41 17-64 3-43 (81)
186 1x4w_A Hypothetical protein FL 27.0 33 0.0011 24.3 2.0 45 14-63 13-61 (67)
187 1bbo_A Human enhancer-binding 26.8 57 0.0019 20.9 3.3 45 136-185 6-51 (57)
188 2hy6_A General control protein 26.5 1E+02 0.0036 18.4 3.8 21 269-289 6-26 (34)
189 1lwu_C Fibrinogen gamma chain; 26.5 85 0.0029 29.7 5.5 31 269-299 24-54 (323)
190 2gmg_A Hypothetical protein PF 26.3 25 0.00085 27.4 1.4 31 26-63 64-95 (105)
191 1lwu_C Fibrinogen gamma chain; 26.0 1.1E+02 0.0037 29.0 6.1 38 268-305 16-53 (323)
192 1m1j_C Fibrinogen gamma chain; 26.0 3.4E+02 0.012 26.4 9.9 12 158-172 15-26 (409)
193 1go4_E MAD1 (mitotic arrest de 25.9 1.5E+02 0.0053 22.7 5.8 34 263-296 11-44 (100)
194 1x62_A C-terminal LIM domain p 25.8 36 0.0012 24.5 2.2 30 13-42 12-41 (79)
195 1zxa_A CGMP-dependent protein 25.7 1.7E+02 0.0059 20.6 5.6 36 263-298 17-52 (67)
196 1wen_A Inhibitor of growth fam 25.5 44 0.0015 23.9 2.6 53 9-62 9-66 (71)
197 1wfp_A Zinc finger (AN1-like) 25.3 74 0.0025 23.0 3.7 45 14-63 23-68 (74)
198 1wfe_A Riken cDNA 2310008M20 p 25.3 70 0.0024 23.9 3.7 29 12-40 21-52 (86)
199 1x4s_A Protein FON, zinc finge 25.2 71 0.0024 22.0 3.4 37 10-46 5-45 (59)
200 1avy_A Fibritin, gpwac M; bact 25.1 1.8E+02 0.0063 20.5 6.7 35 264-298 8-42 (74)
201 1x5w_A Zinc finger protein 64, 24.9 49 0.0017 22.5 2.8 45 136-185 14-59 (70)
202 2ctd_A Zinc finger protein 512 24.2 54 0.0018 24.5 3.1 41 136-182 39-81 (96)
203 3p8c_E Probable protein brick1 23.9 85 0.0029 22.7 3.8 26 269-294 43-68 (75)
204 3nmd_A CGMP dependent protein 23.8 2E+02 0.007 20.5 6.9 29 267-295 36-64 (72)
205 2adr_A ADR1; transcription reg 23.6 73 0.0025 20.6 3.4 44 136-184 7-51 (60)
206 2lv2_A Insulinoma-associated p 23.4 60 0.002 23.8 3.1 45 136-185 33-78 (85)
207 1x6e_A Zinc finger protein 24; 23.4 62 0.0021 22.1 3.1 45 136-185 19-64 (72)
208 3zyq_A Hepatocyte growth facto 23.3 47 0.0016 29.6 3.0 32 13-44 161-196 (226)
209 2d8x_A Protein pinch; LIM doma 23.3 41 0.0014 23.4 2.1 31 17-47 32-63 (70)
210 1weu_A Inhibitor of growth fam 23.3 47 0.0016 25.1 2.5 50 12-62 32-86 (91)
211 2l4z_A DNA endonuclease RBBP8, 22.9 41 0.0014 26.8 2.2 38 16-63 61-99 (123)
212 3uk3_C Zinc finger protein 217 22.7 58 0.002 20.8 2.7 45 136-185 9-54 (57)
213 2o35_A Hypothetical protein DU 22.7 32 0.0011 26.3 1.4 13 37-49 42-54 (105)
214 1j1e_C Troponin I, TNI; THIN f 22.7 2.2E+02 0.0075 24.3 6.8 44 262-305 63-106 (180)
215 2d8z_A Four and A half LIM dom 22.3 46 0.0016 23.0 2.2 32 16-47 31-63 (70)
216 3fyb_A Protein of unknown func 22.3 33 0.0011 26.2 1.4 13 37-49 41-53 (104)
217 1nyp_A Pinch protein; LIM doma 22.1 31 0.0011 23.7 1.2 29 17-45 32-61 (66)
218 3swy_A Cyclic nucleotide-gated 22.0 1.7E+02 0.0058 19.0 5.9 11 269-279 10-20 (46)
219 2cot_A Zinc finger protein 435 21.8 90 0.0031 21.5 3.8 45 136-185 23-68 (77)
220 2d8v_A Zinc finger FYVE domain 21.6 60 0.002 22.9 2.5 31 15-47 7-39 (67)
221 3ljm_A Coil Ser L9C; de novo d 21.4 1.2E+02 0.0041 17.0 4.3 19 279-297 9-27 (31)
222 1x4u_A Zinc finger, FYVE domai 21.4 52 0.0018 24.2 2.4 28 17-44 15-46 (84)
223 2ffw_A Midline-1; B-BOX, ring 20.8 1.1E+02 0.0038 22.1 4.0 31 15-45 29-62 (78)
224 1wig_A KIAA1808 protein; LIM d 20.7 39 0.0013 23.9 1.5 32 16-47 31-64 (73)
225 1jnm_A Proto-oncogene C-JUN; B 20.7 2.1E+02 0.0071 19.5 5.6 36 269-304 20-55 (62)
226 3v0r_A Major allergen ALT A 1; 20.5 6.3 0.00022 31.9 -3.1 15 309-323 10-24 (133)
227 2lbm_A Transcriptional regulat 20.2 72 0.0025 26.3 3.2 44 16-60 63-116 (142)
228 3cve_A Homer protein homolog 1 20.1 2.5E+02 0.0084 20.1 5.9 18 266-283 9-26 (72)
No 1
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=100.00 E-value=5.1e-41 Score=313.62 Aligned_cols=207 Identities=25% Similarity=0.415 Sum_probs=155.1
Q ss_pred Cccccccccccccccc-----cchhHHHHHhhhchHHHHHHHHHHhhccCcccCCCCCCCCCCchhHHHHHHHHHhhhhh
Q psy7814 158 ENFPCKFYQVGCREVF-----KSQALLEKHYDLKTSFHLELLFNKYCSDGSQSTNTPSHGRQDTSNQKEIEAYLMKNKEH 232 (460)
Q Consensus 158 ~~v~Cp~~~~GC~~~~-----~r~~~l~~H~~~~~~~Hl~ll~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (460)
..+.|||...||..++ +|.. |++|+......|+.++...+.
T Consensus 8 ~~i~c~~~~~gc~~~~~~~~~~r~~-~~~h~~~~~~~h~~~~~~~i~--------------------------------- 53 (228)
T 1flk_A 8 DSMKSSVESLQNRVTELESVDKSAG-QVARNTGLLESQLSRHDQMLS--------------------------------- 53 (228)
T ss_dssp ----------------CTTTTTTTT-THHHHHHHHHHHHHHHHHHHH---------------------------------
T ss_pred hheeccccccCceeeccccccchhH-HHHHHHHHHHHHHHHHHHHHH---------------------------------
Confidence 3789999999999999 9999 999999988899888654331
Q ss_pred cccccCCCCCCCCCCCCCCCCCcccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCcE
Q psy7814 233 ESKLWDPNKNQAGDDKSSEGDCSCKTCGDNSHLLKLVYERMVLLEQSMLEQKIKVNNFELNLKQTEEIEDNVVLKLCNGV 312 (460)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~~~~~g~ 312 (460)
.+..++..++.+|. +++..+++|+
T Consensus 54 -------------------------------------------------~~~~~i~~~~~~l~-------~l~~~~~~g~ 77 (228)
T 1flk_A 54 -------------------------------------------------VHDIRLADMDLRFQ-------VLETASYNGV 77 (228)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHHH-------HHHTCCSSSE
T ss_pred -------------------------------------------------HHHHHHHHHHHHHH-------HhhccCcCcE
Confidence 11112222222333 3445678999
Q ss_pred EEEEECChHHHHHHhhh-cCCeEeccCceeCCCccEEEEEEEeCCCC---CCeEEEEEEEecCCCCCCCCCCCCceeEEE
Q psy7814 313 YFWKMYNFPAKLKEMKE-INRYFYSACFYSSCFGYRFCTRVNISRED---AQYLSLFIHLVQGENDDILDWPFVGRIRFT 388 (460)
Q Consensus 313 ~~w~I~~fs~~~~~~~~-~~~~~~S~~F~~~~~Gyk~~l~~yp~G~~---~~~lS~~l~l~~g~~D~~l~Wp~~~~~~l~ 388 (460)
|+|+|+|||.++..+.. ....++|++||+|.+||+|+|++||||++ ++|||+||+|++|++|+.|+|||+++|+|+
T Consensus 78 ~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~Wp~~a~~~l~ 157 (228)
T 1flk_A 78 LIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLM 157 (228)
T ss_dssp EEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGGGTTTEEEEEECCBCCTTTTSSCSSCCCCEEEE
T ss_pred EEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEecCCccccCCCcEEEEEEEE
Confidence 99999999999865443 23589999999998899999999999964 689999999999999999999999999999
Q ss_pred EEcCCCCC-eeeEEEecCCCCCCCCCCcccCCCccCCCccceeecccccCCCCcccccCCeEEEEEEEeecc
Q psy7814 389 ALNTSSEF-SITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVTEMT 459 (460)
Q Consensus 389 lldq~~~~-~~~~~~~~~~~~~~f~~p~~~~~~~~~~G~~~fi~~~~l~~~~~~~yl~dD~l~i~~~v~v~~ 459 (460)
|+||.+++ ++.+++.+++....|.+|.. ..+ .+|||+.||++++|+++| ||+||+|+|+|+|+|.+
T Consensus 158 lldq~~~~~~~~~~~~~~~~~~~F~rp~~-~~~-~~wG~~~Fi~~~~L~~~g---yL~dD~l~I~~~V~v~~ 224 (228)
T 1flk_A 158 LMDQGSSRRHLGDAFKPDPNSSSFKKPTG-EMN-IASGCPVFVAQTVLENGT---YIKDDTIFIKVIVDTSD 224 (228)
T ss_dssp ECCCSSSCCCEEEEECCCTTCTTSSSCSS-SBC-CCCSEEEEEEHHHHSSST---TCCSSEEEEEEECCCTT
T ss_pred EEcCCCCccceeeeecCCCccccccCCcc-CCC-CCcCHHHeeEHHHHccCC---CccCCEEEEEEEEEccc
Confidence 99998765 66677878877788999975 444 489999999999999877 99999999999998753
No 2
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=100.00 E-value=1.7e-38 Score=289.57 Aligned_cols=180 Identities=27% Similarity=0.490 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCcEEEEEECChHHHHHHhhh-cCCeEeccCceeCCCccEEEEEEE
Q psy7814 275 LLEQSMLEQKIKVNNFELNLKQTEEIEDNVVLKLCNGVYFWKMYNFPAKLKEMKE-INRYFYSACFYSSCFGYRFCTRVN 353 (460)
Q Consensus 275 ~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~w~I~~fs~~~~~~~~-~~~~~~S~~F~~~~~Gyk~~l~~y 353 (460)
.|++++++++..+.....+|++++..+++++..+++|+|+|+|+|||.++..+.. .+..++|++||+|.+||+|+|++|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~y 83 (198)
T 4ghu_A 4 LLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVY 83 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEE
Confidence 4455555566666666667777777777778899999999999999999876544 567899999999988999999999
Q ss_pred eCCCC---CCeEEEEEEEecCCCCCCCCCCCCceeEEEEEcCCCC-CeeeEEEecCCCCCCCCCCcccCCCccCCCccce
Q psy7814 354 ISRED---AQYLSLFIHLVQGENDDILDWPFVGRIRFTALNTSSE-FSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNF 429 (460)
Q Consensus 354 p~G~~---~~~lS~~l~l~~g~~D~~l~Wp~~~~~~l~lldq~~~-~~~~~~~~~~~~~~~f~~p~~~~~~~~~~G~~~f 429 (460)
|||++ ++||||||+|++|++|+.++||+.++|+|+|+||.++ .++.+++++++....|++|.. ..+ .+|||++|
T Consensus 84 PnG~~~~~~~~lSlyL~l~~g~~D~~l~wp~~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~-~~~-~~wG~~~F 161 (198)
T 4ghu_A 84 LNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTG-EMN-IASGCPVF 161 (198)
T ss_dssp TTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSS-SBC-CCEEEEEE
T ss_pred eCCCCCCCCCeEEEEEEecCCccCCCCCceEEEEEEEEEEcCCCCccceEEEeecCcccceecCCcc-cCc-CCcCchhE
Confidence 99975 6899999999999999999999999999999999854 677778888877778999876 444 48999999
Q ss_pred eecccccCCCCcccccCCeEEEEEEEeecc
Q psy7814 430 IRVADVLDPGRGFLMEDDTFVIKTQVTEMT 459 (460)
Q Consensus 430 i~~~~l~~~~~~~yl~dD~l~i~~~v~v~~ 459 (460)
|++++|+++| ||+||+|+|+|+|+|+.
T Consensus 162 i~~~~L~~~g---yL~dD~l~I~~~V~v~~ 188 (198)
T 4ghu_A 162 VAQTVLENGT---YIKDDTIFIKVIVDTSD 188 (198)
T ss_dssp EEHHHHHHTT---SCBTTBEEEEEEECCTT
T ss_pred eEHHHhhhcC---CeeCCEEEEEEEEEecc
Confidence 9999999777 99999999999999875
No 3
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=100.00 E-value=2.8e-38 Score=287.60 Aligned_cols=180 Identities=27% Similarity=0.484 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCcEEEEEECChHHHHHHhhh-cCCeEeccCceeCCCccEEEEEE
Q psy7814 274 VLLEQSMLEQKIKVNNFELNLKQTEEIEDNVVLKLCNGVYFWKMYNFPAKLKEMKE-INRYFYSACFYSSCFGYRFCTRV 352 (460)
Q Consensus 274 ~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~w~I~~fs~~~~~~~~-~~~~~~S~~F~~~~~Gyk~~l~~ 352 (460)
+.|++++.+++..+..++.+|.+++.++.+++...++|+|+|+|+|||.+++.+.. ....++|++||+|.+||+|+|++
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~ 82 (192)
T 2gkw_A 3 GLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARV 82 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEE
Confidence 45667777777777777888888888888888888999999999999999865443 22269999999998899999999
Q ss_pred EeCCCC---CCeEEEEEEEecCCCCCCCCCCCCceeEEEEEcCCCC-CeeeEEEecCCCCCCCCCCcccCCCccCCCccc
Q psy7814 353 NISRED---AQYLSLFIHLVQGENDDILDWPFVGRIRFTALNTSSE-FSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNN 428 (460)
Q Consensus 353 yp~G~~---~~~lS~~l~l~~g~~D~~l~Wp~~~~~~l~lldq~~~-~~~~~~~~~~~~~~~f~~p~~~~~~~~~~G~~~ 428 (460)
||||++ ++|||+||+|++|++|+.|+||++++|+|+|+||.++ .++.+++.+++....|.+|.. ..+ .+|||+.
T Consensus 83 yPnG~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~-~~~-~~wG~~~ 160 (192)
T 2gkw_A 83 YLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTG-EMN-IASGCPV 160 (192)
T ss_dssp ETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCCEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSS-SBC-CCEEEEE
T ss_pred EeCCCCCCCCCEEEEEEEEecCCCCccCCCcEEEEEEEEEECCCCCccceEEEEecCCCcccccCCCC-CCc-CCCChHH
Confidence 999964 6899999999999999999999999999999999876 566677888887788999875 444 3799999
Q ss_pred eeecccccCCCCcccccCCeEEEEEEEeec
Q psy7814 429 FIRVADVLDPGRGFLMEDDTFVIKTQVTEM 458 (460)
Q Consensus 429 fi~~~~l~~~~~~~yl~dD~l~i~~~v~v~ 458 (460)
||++++|++.| ||+||+|+|+|+|+|.
T Consensus 161 Fi~~~~L~~~g---yl~dD~l~I~~~V~v~ 187 (192)
T 2gkw_A 161 FVAQTVLENGT---YIKDDTIFIKVIVDTS 187 (192)
T ss_dssp EEEHHHHHHTT---SCBTTEEEEEEEECCT
T ss_pred EeEHHHhCcCC---CeeCCEEEEEEEEEcC
Confidence 99999998777 9999999999999764
No 4
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=100.00 E-value=2.2e-35 Score=268.97 Aligned_cols=173 Identities=27% Similarity=0.496 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccCcEEEEEECChHHHHHHhhh-cCCeEeccCceeCCCccEEEEEEEeCCCC--
Q psy7814 282 EQKIKVNNFELNLKQTEEIEDNVVLKLCNGVYFWKMYNFPAKLKEMKE-INRYFYSACFYSSCFGYRFCTRVNISRED-- 358 (460)
Q Consensus 282 ~l~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~w~I~~fs~~~~~~~~-~~~~~~S~~F~~~~~Gyk~~l~~yp~G~~-- 358 (460)
+|+..+..++.+|.+++..+.+++...++|+|+|+|+|||.++..+.. ....++||+||++++||+|+|++||||++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~ 93 (192)
T 1ca9_A 14 QLERSIGLKDLAMADLEQKVLEMEASTYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTG 93 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCCC
Confidence 344444555555555555556666778999999999999999765332 22369999999966699999999999965
Q ss_pred -CCeEEEEEEEecCCCCCCCCCCCCceeEEEEEcCCCCCeeeEEEecCCCCCCCCCCcccCCCccCCCccceeeccccc-
Q psy7814 359 -AQYLSLFIHLVQGENDDILDWPFVGRIRFTALNTSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVL- 436 (460)
Q Consensus 359 -~~~lS~~l~l~~g~~D~~l~Wp~~~~~~l~lldq~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~G~~~fi~~~~l~- 436 (460)
++||||||++++|++|..++||+.++|+|+|+||.+.++...++.+++....|.+|.. ..+ .+|||+.||++++|+
T Consensus 94 ~~~~lSlyL~l~~~~~~~~~~W~~~a~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~-~~~-~~wG~~~Fi~~~~L~~ 171 (192)
T 1ca9_A 94 RGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVN-DMN-IASGCPLFCPVSKMEA 171 (192)
T ss_dssp TTTEEEEEEEEECCTTGGGSCSSCCCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSS-SBC-CCEEEEEEEETHHHHS
T ss_pred CCCEEEEEEEEccCCCCCcCCCceEEEEEEEEECCCCCceeeEeeccCCchhhhcCCcc-CCC-CCcChhheeEHHHhhh
Confidence 6899999999999999889999999999999999988777777777777778999875 434 489999999999998
Q ss_pred CCCCcccccCCeEEEEEEEeecc
Q psy7814 437 DPGRGFLMEDDTFVIKTQVTEMT 459 (460)
Q Consensus 437 ~~~~~~yl~dD~l~i~~~v~v~~ 459 (460)
..+ ||+||+|+|+|+|+|.+
T Consensus 172 ~~g---yl~dD~l~I~~~V~V~~ 191 (192)
T 1ca9_A 172 KNS---YVRDDAIFIKAIVDLTG 191 (192)
T ss_dssp SCS---SCBTTEEEEEEEECCTT
T ss_pred ccC---CEeCCEEEEEEEEEecC
Confidence 555 99999999999999864
No 5
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=100.00 E-value=8.7e-35 Score=257.41 Aligned_cols=148 Identities=34% Similarity=0.656 Sum_probs=127.4
Q ss_pred ccCcEEEEEECChHHHHHHhhh-cCCeEeccCceeCCCccEEEEEEEeCCCC----CCeEEEEEEEecCCCCCCCCCCCC
Q psy7814 308 LCNGVYFWKMYNFPAKLKEMKE-INRYFYSACFYSSCFGYRFCTRVNISRED----AQYLSLFIHLVQGENDDILDWPFV 382 (460)
Q Consensus 308 ~~~g~~~w~I~~fs~~~~~~~~-~~~~~~S~~F~~~~~Gyk~~l~~yp~G~~----~~~lS~~l~l~~g~~D~~l~Wp~~ 382 (460)
+++|+|+|+|+|||.++..+.. .+..++|++||+|++||+|+|++||||++ ++||||||+|++|++|+.|+||++
T Consensus 2 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~ 81 (160)
T 1lb6_A 2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ 81 (160)
T ss_dssp CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCcee
Confidence 5789999999999999764333 22389999999998999999999999953 679999999999999999999999
Q ss_pred ceeEEEEEcCCCC---CeeeEEEecCCCCCCCCCCcccCCCccCCCccceeecccccCCCCcccccCCeEEEEEEEeecc
Q psy7814 383 GRIRFTALNTSSE---FSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVTEMT 459 (460)
Q Consensus 383 ~~~~l~lldq~~~---~~~~~~~~~~~~~~~f~~p~~~~~~~~~~G~~~fi~~~~l~~~~~~~yl~dD~l~i~~~v~v~~ 459 (460)
++|+|+|+||.+. .++..++.+++....|++|.. +.+..+|||++||++++|+.++ ||+||+|+|+|+|+|+.
T Consensus 82 a~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~-~~~~~~~G~~~Fi~~~~L~~~~---yl~dD~l~I~~~V~v~~ 157 (160)
T 1lb6_A 82 GTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTI-PRNPKGFGYVTFMHLEALRQRT---FIKDDTLLVRCEVSTRF 157 (160)
T ss_dssp SEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSS-SBCSEEEEEEEEEEGGGGGTSC---CCBTTBEEEEEEEEC--
T ss_pred eeEEEEEEcCCCccccccceEEeecCCcchhccCCcc-cCCCCCcCEeeEeEHHHhhhCC---CccCCEEEEEEEEEEee
Confidence 9999999999754 245567777887788999987 6666689999999999999877 99999999999999874
No 6
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=100.00 E-value=1.4e-34 Score=260.27 Aligned_cols=161 Identities=30% Similarity=0.520 Sum_probs=136.2
Q ss_pred HHHHHHHHhhhhhccccCcEEEEEECChHHHHHHhhh-cCCeEeccCceeCCCccEEEEEEEeCCCC---CCeEEEEEEE
Q psy7814 293 NLKQTEEIEDNVVLKLCNGVYFWKMYNFPAKLKEMKE-INRYFYSACFYSSCFGYRFCTRVNISRED---AQYLSLFIHL 368 (460)
Q Consensus 293 ~l~~l~~~~~~~~~~~~~g~~~w~I~~fs~~~~~~~~-~~~~~~S~~F~~~~~Gyk~~l~~yp~G~~---~~~lS~~l~l 368 (460)
+|.++++++++++..+++|+|+|+|+|||.++..+.. .+..++|++||+|.+||+|+|++||||++ ++||||||++
T Consensus 6 ~~~~~~~~~~~~~~~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~~~~~lSlyL~l 85 (178)
T 4gjh_A 6 QLNKNEERFKQLEGACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVV 85 (178)
T ss_dssp HHHHHHHHHHHHHHCCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEE
T ss_pred HHHhHHHHHHHhcCcccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCCCCCCEEEEEEEE
Confidence 3444444555566789999999999999999876444 44589999999998899999999999965 5899999999
Q ss_pred ecCCCCCCCCCCCCceeEEEEEcCCCC-CeeeEEEecCCCCCCCCCCcccCCCccCCCccceeecccccC--CCCccccc
Q psy7814 369 VQGENDDILDWPFVGRIRFTALNTSSE-FSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLD--PGRGFLME 445 (460)
Q Consensus 369 ~~g~~D~~l~Wp~~~~~~l~lldq~~~-~~~~~~~~~~~~~~~f~~p~~~~~~~~~~G~~~fi~~~~l~~--~~~~~yl~ 445 (460)
++|++|+.++||+.++|+|+|+||.++ .++.+++++++....|.+|.. ..+ .+|||++||++++|++ ++ ||+
T Consensus 86 ~~~~~d~~l~W~v~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~-~~~-~~wG~~~Fi~~~~L~~~~~~---yL~ 160 (178)
T 4gjh_A 86 MRGEFDSLLQWPFRQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDG-EMN-IASGCPRFVSHSTLENSKNT---YIK 160 (178)
T ss_dssp BCCTTGGGSCSSCCCEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSS-SBC-CCEEEEEEEEHHHHHCTTCC---SSB
T ss_pred ecCCCCcccCCceEEEEEEEEEcCCCCcceeEEeeccCCccccccCCcc-ccc-CCcChhheeEHHHhhccccC---cCc
Confidence 999999999999999999999999864 466677888887889999875 333 4899999999999987 55 999
Q ss_pred CCeEEEEEEEeec
Q psy7814 446 DDTFVIKTQVTEM 458 (460)
Q Consensus 446 dD~l~i~~~v~v~ 458 (460)
||+|+|+|+|++.
T Consensus 161 dD~l~I~~~V~i~ 173 (178)
T 4gjh_A 161 DDTLFLKVAVDLT 173 (178)
T ss_dssp TTBEEEEEEECCT
T ss_pred CCEEEEEEEEEec
Confidence 9999999999764
No 7
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=100.00 E-value=1.3e-33 Score=251.93 Aligned_cols=158 Identities=29% Similarity=0.525 Sum_probs=131.7
Q ss_pred HHHHhhhhhccccCcEEEEEECChHHHHHHhhhc-CCeEeccCceeCCCccEEEEEEEeCCCC---CCeEEEEEEEecCC
Q psy7814 297 TEEIEDNVVLKLCNGVYFWKMYNFPAKLKEMKEI-NRYFYSACFYSSCFGYRFCTRVNISRED---AQYLSLFIHLVQGE 372 (460)
Q Consensus 297 l~~~~~~~~~~~~~g~~~w~I~~fs~~~~~~~~~-~~~~~S~~F~~~~~Gyk~~l~~yp~G~~---~~~lS~~l~l~~g~ 372 (460)
+++++.+++...++|+|+|+|+|||.++..+... ...++||+||++.+||+|+|++||||++ ++||||||++++|+
T Consensus 5 ~~~~~~~~~~~~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~ 84 (168)
T 1d00_A 5 LEQKVLEMEASTYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGP 84 (168)
T ss_dssp HHHHHHHHHTCCSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCT
T ss_pred HHHHHHHhhccccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCCCCCcEEEEEEEEecCC
Confidence 3334444556678999999999999997653332 2259999999878899999999999964 68999999999999
Q ss_pred CCCCCCCCCCceeEEEEEcCCCCCeeeEEEecCCCCCCCCCCcccCCCccCCCccceeecccccCC-CCcccccCCeEEE
Q psy7814 373 NDDILDWPFVGRIRFTALNTSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDP-GRGFLMEDDTFVI 451 (460)
Q Consensus 373 ~D~~l~Wp~~~~~~l~lldq~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~G~~~fi~~~~l~~~-~~~~yl~dD~l~i 451 (460)
+|..++||+.++|+|+|+||++.++...++.++++...|.+|.. ..+ .+|||++||++++|++. + ||+||+|+|
T Consensus 85 ~~~~~~w~~~~~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~-~~~-~~~G~~~Fi~~~~L~~~~g---yl~dD~l~I 159 (168)
T 1d00_A 85 NDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVN-DMN-IASGCPLFCPVSKMEAKNS---YVRDDAIFI 159 (168)
T ss_dssp TGGGSCSSCCCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSS-SBC-CCEEEEEEEETTTTTSSSS---SSBTTEEEE
T ss_pred CCccCCCceEEEEEEEEECCCCCccceeccccCcchhhccCCCc-CCC-CCcCcceEeEHHHhcccCC---ceeCCEEEE
Confidence 99889999999999999999987777777766666678998875 444 48999999999999875 5 999999999
Q ss_pred EEEEeecc
Q psy7814 452 KTQVTEMT 459 (460)
Q Consensus 452 ~~~v~v~~ 459 (460)
+|+|+|.+
T Consensus 160 ~~~V~v~~ 167 (168)
T 1d00_A 160 KAIVDLTG 167 (168)
T ss_dssp EEEECCTT
T ss_pred EEEEEecC
Confidence 99998753
No 8
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.94 E-value=8.3e-27 Score=208.16 Aligned_cols=148 Identities=28% Similarity=0.589 Sum_probs=137.8
Q ss_pred CCCCCCcccccccccccccceecCCCCcccHhhHHHHHhcCCCCCCCCCcccccccccccchHHHHHHHhccccCCCCCC
Q psy7814 10 KLNLDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNYTRREILENNLTCPYKQC 89 (460)
Q Consensus 10 ~~~~~~~l~C~iC~~~l~~p~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n~gC 89 (460)
.+.+++.|.|+||..++.+|++++|||+||..||.+|+..++. .||.||.++..+++++++.+.+.|.++.|+|+|.||
T Consensus 12 ~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n~GC 90 (170)
T 3hcs_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGH-KCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGC 90 (170)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCS-BCTTTCCBCCGGGCEECHHHHHHHHTSEEECCSTTC
T ss_pred ccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCC-CCCCCccCcchhhhhhhHHHHHHHhhcccCCCCCCC
Confidence 4578899999999999999999999999999999999987553 599999999988899999999999999999999999
Q ss_pred CceeeccccccccccccccccCCCcccccCCCCCCCCCCCCCCccCCCCccccccchhhhhhhcCCCCCccccccccccc
Q psy7814 90 SSQLSIPEYESHVNTCYLKYSQPSVEDITDSPTSSFRNTSGIPTNKRNSKILTVTVFPEHLNMQGSSNENFPCKFYQVGC 169 (460)
Q Consensus 90 ~~~~~l~~l~~H~~~C~~~~~~C~~~~~~~h~~c~~~~~~~~~~~~~c~~~~~r~~l~~H~~~~c~~~~~v~Cp~~~~GC 169 (460)
.|.+.+.+++.|+..|+|..+.|| .|+..+.|.+|..|+...|+ ...+.|+| |
T Consensus 91 ~~~~~~~~l~~H~~~C~~~~v~C~----------------------~C~~~~~r~~l~~H~~~~C~-~r~~~C~~----C 143 (170)
T 3hcs_A 91 LHKMELRHLEDHQAHCEFALMDCP----------------------QCQRPFQKFHINIHILKDCP-RRQVSCDN----C 143 (170)
T ss_dssp CCEEEGGGHHHHHTTCTTSEEECT----------------------TTCCEEEGGGHHHHHHHTCT-TCEEECTT----T
T ss_pred CceecHhHHHHHHhcCCceeeECC----------------------CCChHHHHHHHHHHhhhhCC-CCCeECCC----C
Confidence 999999999999999999999996 89999999999999988887 67899997 9
Q ss_pred cccccchhHHHHHhhhc
Q psy7814 170 REVFKSQALLEKHYDLK 186 (460)
Q Consensus 170 ~~~~~r~~~l~~H~~~~ 186 (460)
...+.+.+ +++|.+.+
T Consensus 144 ~~~~~~~~-l~~H~~~~ 159 (170)
T 3hcs_A 144 AASMAFED-KEIHDQNC 159 (170)
T ss_dssp CCEEEGGG-HHHHHTTC
T ss_pred CCccCHHH-HHhHHHhC
Confidence 99999999 99998765
No 9
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=99.92 E-value=1.2e-25 Score=233.60 Aligned_cols=140 Identities=27% Similarity=0.515 Sum_probs=118.7
Q ss_pred EEEEEECChHHHHHHhhhcCCeEeccCceeCCCccEEEEEEEeCCCCCCeEEEEEEEecCCCCCCCCCCCC-ceeEEEEE
Q psy7814 312 VYFWKMYNFPAKLKEMKEINRYFYSACFYSSCFGYRFCTRVNISREDAQYLSLFIHLVQGENDDILDWPFV-GRIRFTAL 390 (460)
Q Consensus 312 ~~~w~I~~fs~~~~~~~~~~~~~~S~~F~~~~~Gyk~~l~~yp~G~~~~~lS~~l~l~~g~~D~~l~Wp~~-~~~~l~ll 390 (460)
.++|+|.||++++.. .+..++||+||++ .||+|+|.+||+| ++|+|||++|++|++|+.|+|||. .++||+||
T Consensus 407 ~~vw~i~nfs~~l~~---~~~~~~Sp~Fys~-~GY~~~v~l~~~~--~~~~~~~~~l~sG~~D~~L~WP~~~~q~t~~ll 480 (592)
T 4gwm_A 407 HHIWHIRNFTQFIGS---PNGTLYSPPFYSS-KGYAFQIYLNLAH--VTNAGIYFHLISGANDDQLQWPCPWQQATMTLL 480 (592)
T ss_dssp SEEEEECSCGGGTTC---TTCEEECCCEECT-TSCEEEEEEECCS--SSEEEEEEEEECCTTGGGSCSSCCSEEEEEEEC
T ss_pred CCceeecCHHHhhcC---CCCceeCCCccCC-CCeEEEEEEecCC--CceEEEEEEEecCCCCCCccCCCCCCEEEEEEe
Confidence 589999999999642 5678999999995 5999999998876 579999999999999999999996 46999999
Q ss_pred cCCCC----CeeeEEEecCCCCC------CCCCCccc-----------CCCccCCCccceeecccccCCCCcccccCCeE
Q psy7814 391 NTSSE----FSITDEIQSDKNFD------SFKRPVNF-----------FLNKKAFGFNNFIRVADVLDPGRGFLMEDDTF 449 (460)
Q Consensus 391 dq~~~----~~~~~~~~~~~~~~------~f~~p~~~-----------~~~~~~~G~~~fi~~~~l~~~~~~~yl~dD~l 449 (460)
||+++ .+..++++++|... .|.||+.. ..++.+|||+.||+|+.|..++ |||||+|
T Consensus 481 DQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~~r~---fiK~d~~ 557 (592)
T 4gwm_A 481 DQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLKSRD---FIKGDDV 557 (592)
T ss_dssp CCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHTSTT---SSBTTBE
T ss_pred CCCCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHhhcC---cccCCeE
Confidence 99854 46678888877432 38888641 1234579999999999999888 9999999
Q ss_pred EEEEEEeeccC
Q psy7814 450 VIKTQVTEMTH 460 (460)
Q Consensus 450 ~i~~~v~v~~~ 460 (460)
+|+++|+.|+|
T Consensus 558 ~i~~~~eD~~~ 568 (592)
T 4gwm_A 558 YILLTVEDISH 568 (592)
T ss_dssp EEEEEEEECGG
T ss_pred EEEEEEEeCcc
Confidence 99999999886
No 10
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.92 E-value=2.1e-25 Score=193.79 Aligned_cols=132 Identities=29% Similarity=0.464 Sum_probs=104.4
Q ss_pred cccCcEEEEEECChHHHHHHhhhcCCeEeccCceeCCC-ccEEEEEEEeCCCC---CCeEEEEEEEecCCCCCCCCCCCC
Q psy7814 307 KLCNGVYFWKMYNFPAKLKEMKEINRYFYSACFYSSCF-GYRFCTRVNISRED---AQYLSLFIHLVQGENDDILDWPFV 382 (460)
Q Consensus 307 ~~~~g~~~w~I~~fs~~~~~~~~~~~~~~S~~F~~~~~-Gyk~~l~~yp~G~~---~~~lS~~l~l~~g~~D~~l~Wp~~ 382 (460)
...+|+|+|+|+|||.+++ ..+..++||+|++|.+ ||+|+|++||||++ ++||||||+++++ ..||+.
T Consensus 7 ~~~~~~~~w~I~~fs~~~~---~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~~~~~~lSlyL~l~~~-----~~w~v~ 78 (145)
T 3ivv_A 7 KVVKFSYMWTINNFSFCRE---EMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC-----PKSEVR 78 (145)
T ss_dssp CCCEEEEEEEESSGGGCCC---CTTCCEECCCEEESGGGCEEEEEEEETTCSSGGGTTEEEEEEEEEEC-----SSSEEE
T ss_pred cEEEEEEEEEEcCchHHhh---cCCCEEECCCcCCCCcCCceEEEEEEcCCCCCCCCCeEEEEEEEcCC-----CCCcEE
Confidence 3467899999999998732 1467899999999722 35999999999965 6899999999875 479999
Q ss_pred ceeEEEEEcCCCCCeeeEEEecCCCCCCCCCCcccCCCccCCCccceeecccccC--CCCcccccCCeEEEEEEEeecc
Q psy7814 383 GRIRFTALNTSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLD--PGRGFLMEDDTFVIKTQVTEMT 459 (460)
Q Consensus 383 ~~~~l~lldq~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~G~~~fi~~~~l~~--~~~~~yl~dD~l~i~~~v~v~~ 459 (460)
++|+|+|+||.+..+... +....+.|.+ ..+|||++||++++|.+ .+ ||+||+|+|+|+|+|+.
T Consensus 79 a~f~l~llnq~~~~~~~~---~~~~~~~F~~-------~~~wG~~~Fi~~~~L~~~~~~---yl~dD~l~I~~~V~V~~ 144 (145)
T 3ivv_A 79 AKFKFSILNAKGEETKAM---ESQRAYRFVQ-------GKDWGFKKFIRRDFLLDEANG---LLPDDKLTLFCEVSVVQ 144 (145)
T ss_dssp EEEEEEEECTTSCEEEEE---ECSSCEEEET-------TCEEEEEEEEEHHHHHCGGGC---SSGGGCEEEEEEEEECC
T ss_pred EEEEEEEEecCCCceeee---cccceEEecC-------CCCcCHHHeEEhhhhccccCC---cEeCCEEEEEEEEEEEe
Confidence 999999999987654321 2222234431 24799999999999953 45 99999999999999985
No 11
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=99.88 E-value=6.7e-23 Score=179.99 Aligned_cols=129 Identities=16% Similarity=0.268 Sum_probs=99.8
Q ss_pred ccCcEEEEEECChHHHHHHhhhcCCeEeccCceeCCCccEEEEEEEeCCC----CCCeEEEEEEEecCCCCCCCCCCCCc
Q psy7814 308 LCNGVYFWKMYNFPAKLKEMKEINRYFYSACFYSSCFGYRFCTRVNISRE----DAQYLSLFIHLVQGENDDILDWPFVG 383 (460)
Q Consensus 308 ~~~g~~~w~I~~fs~~~~~~~~~~~~~~S~~F~~~~~Gyk~~l~~yp~G~----~~~~lS~~l~l~~g~~D~~l~Wp~~~ 383 (460)
...|+|+|+|+|||.+ . ..++|++|++| ||+|+|++||+|+ .++||||||++. ++. ....|++.+
T Consensus 16 ~~~~~~~w~I~nfS~~------~-~~~~S~~f~~g--g~~W~i~~yP~G~~~~~~~~~lSlyL~~~-~~~-~~~~w~v~a 84 (155)
T 2foj_A 16 RSEATFQFTVERFSRL------S-ESVLSPPCFVR--NLPWKIMVMPRFYPDRPHQKSVGFFLQCN-AES-DSTSWSCHA 84 (155)
T ss_dssp CSEEEEEEEESSGGGC------C-SCEECCCEEET--TEEEEEEEEEEC------CBEEEEEEEES-TTC-CCSSCEEEE
T ss_pred CCCcEEEEEECChhhc------C-CceEcCCEEEC--CccEEEEEEECCCCCCCCCCEEEEEEEeC-CCC-CCCCCEEEE
Confidence 4568999999999987 1 56999999987 9999999999995 358999999984 443 456799999
Q ss_pred eeEEEEEcCCCCC-eeeEEEecCCCCCCCCCCcccCCCccCCCccceeecccccCCCCcccccCCeEEEEEEEeecc
Q psy7814 384 RIRFTALNTSSEF-SITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVTEMT 459 (460)
Q Consensus 384 ~~~l~lldq~~~~-~~~~~~~~~~~~~~f~~p~~~~~~~~~~G~~~fi~~~~l~~~~~~~yl~dD~l~i~~~v~v~~ 459 (460)
+|+|+|+||.+.. +...... +.|.++ ..+|||++||++++|.+.. .+||+||+|+|+|.|.|..
T Consensus 85 ~~~l~l~~~~~~~~~~~~~~~-----~~F~~~------~~~wG~~~Fi~~~~L~~~~-~~yl~dD~l~Ie~~V~V~~ 149 (155)
T 2foj_A 85 QAVLKIINYRDDEKSFSRRIS-----HLFFHK------ENDWGFSNFMAWSEVTDPE-KGFIDDDKVTFEVFVQADA 149 (155)
T ss_dssp EEEEEECCSSCGGGCEEEEEE-----EEEETT------BCEEEEEEEEEHHHHTCTT-TSSCBTTBEEEEEEEEECC
T ss_pred EEEEEEEcCCCCcceEEeccE-----EEeCCC------CCCEeECCeEEHHHhcCcC-CCceECCEEEEEEEEEEeC
Confidence 9999999998654 3332221 224322 2379999999999997321 2299999999999998853
No 12
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.83 E-value=6.1e-21 Score=186.86 Aligned_cols=132 Identities=27% Similarity=0.433 Sum_probs=100.5
Q ss_pred ccCcEEEEEECChHHHHHHhhhcCCeEeccCceeCC-CccEEEEEEEeCCCC---CCeEEEEEEEecCCCCCCCCCCCCc
Q psy7814 308 LCNGVYFWKMYNFPAKLKEMKEINRYFYSACFYSSC-FGYRFCTRVNISRED---AQYLSLFIHLVQGENDDILDWPFVG 383 (460)
Q Consensus 308 ~~~g~~~w~I~~fs~~~~~~~~~~~~~~S~~F~~~~-~Gyk~~l~~yp~G~~---~~~lS~~l~l~~g~~D~~l~Wp~~~ 383 (460)
..+|+|+|+|.|||.++ ...+..++||+|++|. +||+|+|++||||.+ ++|||+||++..++ .||+.+
T Consensus 4 ~~~~~~~w~I~nfs~~~---~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~~-----~~~v~a 75 (312)
T 3hqi_A 4 VVKFSYMWTINNFSFCR---EEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCP-----KSEVRA 75 (312)
T ss_dssp EEEEEEEEEETTGGGCC---CCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEECC-----C-CEEE
T ss_pred eEEEEEEEEEcCcchhh---hcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCCcEEEEEEEcCCC-----CCcEEE
Confidence 45689999999999883 1147789999999972 137999999999953 68999999998654 699999
Q ss_pred eeEEEEEcCCCCCeeeEEEecCCCCCCCCCCcccCCCccCCCccceeecccccCCCCcccccCCeEEEEEEEeec
Q psy7814 384 RIRFTALNTSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVTEM 458 (460)
Q Consensus 384 ~~~l~lldq~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~G~~~fi~~~~l~~~~~~~yl~dD~l~i~~~v~v~ 458 (460)
+|+|+|+||+++..... .......|.+ ..+|||++||++++|++.. .+||+||+|+|+|+|.|+
T Consensus 76 ~~~~~l~~~~~~~~~~~---~~~~~~~F~~-------~~~wG~~~Fi~~~~L~~~~-~~yl~dD~l~i~~~v~v~ 139 (312)
T 3hqi_A 76 KFKFSILNAKGEETKAM---ESQRAYRFVQ-------GKDWGFKKFIRRGFLLDEA-NGLLPDDKLTLFCEVSVV 139 (312)
T ss_dssp EEEEEEECTTSCEEEEE---ECSSCEEECT-------TCEEEEEEEEEHHHHTCGG-GCCCGGGCEEEEEEEEEE
T ss_pred EEEEEEEeCCCCccccc---ccCCceeCCC-------CCCcCHHHhccHHHhhccc-cCeecCCEEEEEEEEEEE
Confidence 99999999987653321 1112233431 2379999999999996532 239999999999999887
No 13
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.81 E-value=2.3e-20 Score=155.82 Aligned_cols=101 Identities=36% Similarity=0.821 Sum_probs=91.0
Q ss_pred CCCCCCcccccccccccccceecCCCCcccHhhHHHHHhcCCCCCCCCCcccccccccccchHHHHHHHhccccCCCCCC
Q psy7814 10 KLNLDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNYTRREILENNLTCPYKQC 89 (460)
Q Consensus 10 ~~~~~~~l~C~iC~~~l~~p~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n~gC 89 (460)
.+.+++.+.|+||..++.+|++++|||+||..||..|+...+. .||.||.++...++++++.+.+.+.++.|+|+|.||
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n~gC 90 (118)
T 3hct_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGH-KCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGC 90 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCS-BCTTTCCBCCGGGCEECHHHHHHHHTSEEECSSTTC
T ss_pred ccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCC-CCCCCCCCcCHHhcccCHHHHHHHccceeECCCCCC
Confidence 4578889999999999999999999999999999999987653 499999999988899999999999999999999999
Q ss_pred CceeeccccccccccccccccC
Q psy7814 90 SSQLSIPEYESHVNTCYLKYSQ 111 (460)
Q Consensus 90 ~~~~~l~~l~~H~~~C~~~~~~ 111 (460)
+|++.+.+++.|+.+|.+..+.
T Consensus 91 ~~~~~~~~l~~H~~~c~~~~~~ 112 (118)
T 3hct_A 91 LHKMELRHLEDHQAHCEFALLE 112 (118)
T ss_dssp CCEEEGGGSGGGTSSSCC----
T ss_pred CCEEeeHHHHHHHHHchhhhhh
Confidence 9999999999999999987654
No 14
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.78 E-value=4.6e-20 Score=158.41 Aligned_cols=98 Identities=29% Similarity=0.599 Sum_probs=86.9
Q ss_pred CCCCCcccccccccccccceecCCCCcccHhhHHHHHhcCCCCCCCCCccccc---------ccccccchHHHHHHHhcc
Q psy7814 11 LNLDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLT---------KDDIFIDNYTRREILENN 81 (460)
Q Consensus 11 ~~~~~~l~C~iC~~~l~~p~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~---------~~~~~~~~~~~~~i~~l~ 81 (460)
+.+++.|.|+||..++.+|++++|||+||..||.+|+..+.. .||.||.++. ...+++++.+.++|.++.
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~-~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L~ 104 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQ-NCAACVHEGIYEEGISILESSSAFPDNAARREVESLP 104 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCE-ECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTSE
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCC-CCCCCCCcccccccccccchhhhcccHHHHHHHcccc
Confidence 467889999999999999999999999999999999976543 5999998642 346789999999999999
Q ss_pred ccCCCCCCCceeecccccc-ccccccccc
Q psy7814 82 LTCPYKQCSSQLSIPEYES-HVNTCYLKY 109 (460)
Q Consensus 82 v~C~n~gC~~~~~l~~l~~-H~~~C~~~~ 109 (460)
|+|+|.||.|++.+.+++. |+..|+-..
T Consensus 105 v~Cpn~GC~~~~~l~~l~~~H~~~~~~~~ 133 (141)
T 3knv_A 105 AVCPSDGCTWKGTLKEYESCHEGRCPLML 133 (141)
T ss_dssp EECCSTTCCCEEEHHHHHHHTTTCCHHHH
T ss_pred cccCCCCCCCEeEHHHHHHHHHHHhHHHH
Confidence 9999999999999999998 999998543
No 15
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.73 E-value=1.1e-18 Score=145.17 Aligned_cols=96 Identities=27% Similarity=0.516 Sum_probs=84.6
Q ss_pred CCCCcccccccccccccceecCCCCcccHhhHHHHHhcCCCCCCCCCcccccccccc-cchHHHHHHHhccccCCCCCCC
Q psy7814 12 NLDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIF-IDNYTRREILENNLTCPYKQCS 90 (460)
Q Consensus 12 ~~~~~l~C~iC~~~l~~p~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~-~~~~~~~~i~~l~v~C~n~gC~ 90 (460)
.+.+.+.|+||..++.+|+.++|||+||..||.+|+...+. .||.||.++...++. ++..+.+.+..+.|+|+|.||+
T Consensus 19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~gC~ 97 (116)
T 1rmd_A 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGS-YCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPAQDCN 97 (116)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCS-BCTTTCCBCCGGGCBCCCHHHHHHHHHCEEECCSTTCC
T ss_pred hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcC-cCCCCCCCCCHhhccccHHHHHHHHHHhcCCCCCCCCc
Confidence 45668899999999999999999999999999999987443 599999999876654 4566777888999999999999
Q ss_pred ceeecccccccccccccc
Q psy7814 91 SQLSIPEYESHVNTCYLK 108 (460)
Q Consensus 91 ~~~~l~~l~~H~~~C~~~ 108 (460)
|.+.+.+++.|+.+|.+.
T Consensus 98 ~~~~~~~~~~H~~~C~~~ 115 (116)
T 1rmd_A 98 EEVSLEKYNHHVSSHKES 115 (116)
T ss_dssp CEEEHHHHHHHHHTSCCC
T ss_pred chhhHhHHHHHHHHhhcc
Confidence 999999999999999874
No 16
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.71 E-value=6.2e-18 Score=176.93 Aligned_cols=128 Identities=16% Similarity=0.251 Sum_probs=96.7
Q ss_pred ccCcEEEEEECChHHHHHHhhhcCCeEeccCceeCCCccEEEEEEEeCCC----CCCeEEEEEEEecCCCCCCCCCCCCc
Q psy7814 308 LCNGVYFWKMYNFPAKLKEMKEINRYFYSACFYSSCFGYRFCTRVNISRE----DAQYLSLFIHLVQGENDDILDWPFVG 383 (460)
Q Consensus 308 ~~~g~~~w~I~~fs~~~~~~~~~~~~~~S~~F~~~~~Gyk~~l~~yp~G~----~~~~lS~~l~l~~g~~D~~l~Wp~~~ 383 (460)
...|+|+|+|+|||.+ .+ .++|++|.+| ||+|+|.+||+|+ .++|||+||.+... ...-.|.+.+
T Consensus 28 ~~~~~~~w~I~nfS~~------~~-~~~S~~F~vg--g~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~--~~~~~w~v~a 96 (522)
T 2f1z_A 28 RSEATFQFTVERFSRL------SE-SVLSPPCFVR--NLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE--SDSTSWSCHA 96 (522)
T ss_dssp CSEEEEEEEESSCTTC------CS-CEECCCEEET--TEEEEEEECBC--------CBBCEEEEESTT--CCCSSCBEEE
T ss_pred cCCcEEEEEECChhhc------CC-ceeCCCEEEC--CEeeEEEEEeCCCCCCCCCCeEEEEEEecCC--CCCCCceEEE
Confidence 4568999999999987 22 7999999988 9999999999995 36799999999765 3445799999
Q ss_pred eeEEEEEcCCCCC-eeeEEEecCCCCCCCCCCcccCCCccCCCccceeecccccCCCCcccccCCeEEEEEEEeec
Q psy7814 384 RIRFTALNTSSEF-SITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVTEM 458 (460)
Q Consensus 384 ~~~l~lldq~~~~-~~~~~~~~~~~~~~f~~p~~~~~~~~~~G~~~fi~~~~l~~~~~~~yl~dD~l~i~~~v~v~ 458 (460)
+|+|+|+||.+.. +..... .+.|.. +..+|||++||++++|.+.. .|||+||+++|+|.|.|.
T Consensus 97 ~f~l~l~n~~~~~~~~~~~~-----~~~F~~------~~~~wG~~~Fi~~~~L~~~~-~g~L~nD~l~i~~~V~v~ 160 (522)
T 2f1z_A 97 QAVLKIINYRDDEKSFSRRI-----SHLFFH------KENDWGFSNFMAWSEVTDPE-KGFIDDDKVTFEVFVQAD 160 (522)
T ss_dssp EEEEEECCTTCGGGCEEEEC-----CEEECG------GGCEEEESSSSBHHHHSCGG-GSSCBTTBEEEEEEEEEC
T ss_pred EEEEEEEcCCCCccceeccc-----eeEecC------CCCCcchhheeEhhHhcCcc-cCcccCCcEEEEEEeecc
Confidence 9999999987643 222211 122321 23479999999999995422 239999999999999875
No 17
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.39 E-value=5.1e-13 Score=104.09 Aligned_cols=70 Identities=11% Similarity=0.057 Sum_probs=61.5
Q ss_pred CCCCCCCcccccccccccccceecCCCCcccHhhHHHHHhcCCCCCCCCCcccccccccccchHHHHHHHhc
Q psy7814 9 NKLNLDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNYTRREILEN 80 (460)
Q Consensus 9 ~~~~~~~~l~C~iC~~~l~~p~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 80 (460)
....+++.|.||||+.++.+||.++|||+||+.||.+|+.... .||.|+.++...++.++..+.+.|..+
T Consensus 7 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~--~cP~~~~~l~~~~l~pn~~L~~~i~~~ 76 (85)
T 2kr4_A 7 DYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSP--TDPFNRQMLTESMLEPVPELKEQIQAW 76 (85)
T ss_dssp CCTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCS--BCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred hhhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCC--CCCCCcCCCChHhcchHHHHHHHHHHH
Confidence 4457889999999999999999999999999999999998644 599999999988888888887777654
No 18
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.39 E-value=6e-13 Score=105.54 Aligned_cols=76 Identities=18% Similarity=0.510 Sum_probs=60.7
Q ss_pred cCCCCCCCCCcccccccccccccceecC-CCCcccHhhHHHHHhcCCCCCCCCCccccc-ccccccchHHHHHHHhcc
Q psy7814 6 VANNKLNLDPRFECSICLEYLKDAILTS-CGHKFCAACIDSWIDVKGKNYCPIDEKVLT-KDDIFIDNYTRREILENN 81 (460)
Q Consensus 6 ~~~~~~~~~~~l~C~iC~~~l~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~-~~~~~~~~~~~~~i~~l~ 81 (460)
.....+.+++.+.|+||..++.+|+.++ |||+||..||..|+...+...||.||.++. ...+.++..+.+.+..+.
T Consensus 3 ~~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~ 80 (92)
T 3ztg_A 3 LGSEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFK 80 (92)
T ss_dssp SSSSCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHH
T ss_pred CCcccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHH
Confidence 3456678899999999999999999998 999999999999997655446999999974 455666666655555443
No 19
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.36 E-value=8.2e-13 Score=105.65 Aligned_cols=71 Identities=14% Similarity=0.068 Sum_probs=62.3
Q ss_pred CCCCCCCcccccccccccccceecCCC-CcccHhhHHHHHhcCCCCCCCCCcccccccccccchHHHHHHHhcc
Q psy7814 9 NKLNLDPRFECSICLEYLKDAILTSCG-HKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNYTRREILENN 81 (460)
Q Consensus 9 ~~~~~~~~l~C~iC~~~l~~p~~~~Cg-H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~ 81 (460)
....+++.|.||||+.++.+||+++|| |+||+.||.+|+.... .||.|+.++...++.++..+.+.|..+.
T Consensus 15 ~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~--~cP~~~~~l~~~~L~pn~~Lk~~I~~~~ 86 (98)
T 1wgm_A 15 TYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQ--TDPFNRSPLTMDQIRPNTELKEKIQRWL 86 (98)
T ss_dssp CCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSC--BCTTTCSBCCTTTSEECHHHHHHHHHHH
T ss_pred hhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCC--CCCCCCCCCChhhceEcHHHHHHHHHHH
Confidence 345678899999999999999999999 9999999999998644 5999999999888889988888877654
No 20
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.36 E-value=5.6e-13 Score=102.27 Aligned_cols=69 Identities=23% Similarity=0.470 Sum_probs=58.8
Q ss_pred CCCCCcccccccccccccceecCCCCcccHhhHHHHHhcCCCCCCCCCcccccccccccchHHHHHHHhc
Q psy7814 11 LNLDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNYTRREILEN 80 (460)
Q Consensus 11 ~~~~~~l~C~iC~~~l~~p~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 80 (460)
..+++.+.|+||..++.+|+.++|||+||..||.+|+..+. ..||.||.++...++.++..+.+.+..+
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~-~~CP~C~~~~~~~~l~~n~~l~~~i~~~ 71 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGH-KTCPKSQETLLHAGLTPNYVLKSLIALW 71 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTC-CBCTTTCCBCSSCCCEECTTTHHHHHHH
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCc-CCCCCCcCCCChhhCccCHHHHHHHHHH
Confidence 46788999999999999999999999999999999997533 3599999999887777887777666554
No 21
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.35 E-value=9.5e-13 Score=105.70 Aligned_cols=71 Identities=11% Similarity=0.036 Sum_probs=61.9
Q ss_pred CCCCCCCcccccccccccccceecCCCCcccHhhHHHHHhcCCCCCCCCCcccccccccccchHHHHHHHhcc
Q psy7814 9 NKLNLDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNYTRREILENN 81 (460)
Q Consensus 9 ~~~~~~~~l~C~iC~~~l~~p~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~ 81 (460)
....+++.|.||||+.++.+||.++|||+||+.||.+|+.... .||.|+.++...++.++..+.+.|..+.
T Consensus 22 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~--~cP~~~~~l~~~~L~pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 22 DYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSP--TDPFNRQTLTESMLEPVPELKEQIQAWM 92 (100)
T ss_dssp SCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCS--BCSSSCCBCCTTSSEECHHHHHHHHHHH
T ss_pred hhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCC--CCCCCCCCCChhhceECHHHHHHHHHHH
Confidence 3456788999999999999999999999999999999998543 5999999999888889988887777543
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.26 E-value=6.2e-12 Score=95.31 Aligned_cols=57 Identities=21% Similarity=0.556 Sum_probs=49.5
Q ss_pred CCCCCCCCcccccccccccccceecC-CCCcccHhhHHHHHhcCCCCCCCCCcccccc
Q psy7814 8 NNKLNLDPRFECSICLEYLKDAILTS-CGHKFCAACIDSWIDVKGKNYCPIDEKVLTK 64 (460)
Q Consensus 8 ~~~~~~~~~l~C~iC~~~l~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (460)
...+.+++.+.|+||..++.+|+.++ |||.||..||.+|+...+...||.||.++..
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 7 GEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp SCCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred cccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 45567888999999999999999998 9999999999999987643469999998654
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=9.9e-12 Score=91.94 Aligned_cols=58 Identities=22% Similarity=0.614 Sum_probs=49.5
Q ss_pred CCCCCCCcccccccccccccceecCCCCcccHhhHHHHHhcCCCCCCCCCccccccccc
Q psy7814 9 NKLNLDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDI 67 (460)
Q Consensus 9 ~~~~~~~~l~C~iC~~~l~~p~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 67 (460)
....+++.+.|+||...+.+|+.++|||.||..|+.+|+.... ..||.||.++..+++
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 8 FVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSS-PKCTACQESIVKDKV 65 (66)
T ss_dssp SCCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSS-CCCTTTCCCCCTTTC
T ss_pred hhhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCc-CCCCCCCcCCChhhc
Confidence 3456788999999999999999999999999999999996433 359999999887654
No 24
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=8e-12 Score=99.29 Aligned_cols=71 Identities=30% Similarity=0.538 Sum_probs=59.5
Q ss_pred CCCCCcccccccccccccceecC-CCCcccHhhHHHHHhcC----CCCCCCC--Cccc-ccccccccchHHHHHHHhcc
Q psy7814 11 LNLDPRFECSICLEYLKDAILTS-CGHKFCAACIDSWIDVK----GKNYCPI--DEKV-LTKDDIFIDNYTRREILENN 81 (460)
Q Consensus 11 ~~~~~~l~C~iC~~~l~~p~~~~-CgH~fC~~Ci~~~~~~~----~~~~CP~--Cr~~-~~~~~~~~~~~~~~~i~~l~ 81 (460)
+...+.|.||||+.++.+||.++ |||+||+.||..|+... +...||. |+.. +...++.++..+.+.|..+.
T Consensus 2 ~~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~ 80 (94)
T 2yu4_A 2 SSGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHN 80 (94)
T ss_dssp CSCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHH
T ss_pred CCCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHH
Confidence 45677899999999999999985 99999999999999864 2346999 7766 77788889988888887654
No 25
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.8e-11 Score=92.28 Aligned_cols=60 Identities=33% Similarity=0.611 Sum_probs=51.4
Q ss_pred CCCCCCCCCcccccccccccccceec-CCCCcccHhhHHHHHhcCCCCCCCCCcccccccccc
Q psy7814 7 ANNKLNLDPRFECSICLEYLKDAILT-SCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIF 68 (460)
Q Consensus 7 ~~~~~~~~~~l~C~iC~~~l~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~ 68 (460)
+...+.+++.+.|+||...+.+|+.+ +|||.||..||.+|+.... .||.||.++...++.
T Consensus 6 ~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~--~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 6 SGNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSN--RCPKCNIVVHQTQPL 66 (72)
T ss_dssp CCCCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCS--SCTTTCCCCCSSCSC
T ss_pred hhhHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCC--cCCCcCcccCccccc
Confidence 34556788899999999999999996 9999999999999997654 499999998875543
No 26
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=2.1e-11 Score=94.08 Aligned_cols=68 Identities=18% Similarity=0.362 Sum_probs=54.5
Q ss_pred CCCCCCCcccccccccccccceecCCCCcccHhhHHHHHhcCCCCCCCCCcccccccccccchHHHHHHHh
Q psy7814 9 NKLNLDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNYTRREILE 79 (460)
Q Consensus 9 ~~~~~~~~l~C~iC~~~l~~p~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~ 79 (460)
..+...+.+.|+||...+.+|+.++|||.||..||.+|+.... .||+||.++. ..+.++..+.+.+..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~--~CP~Cr~~~~-~~~~~~~~l~~~~~~ 75 (81)
T 2csy_A 8 GSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATP--RCYICDQPTG-GIFNPAKELMAKLQK 75 (81)
T ss_dssp CSSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCS--BCSSSCCBCC-SCCEECHHHHHHHSS
T ss_pred CcccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCC--cCCCcCcccc-ccCCcHHHHHHHHHh
Confidence 4456677899999999999999999999999999999997654 4999999987 344555555555443
No 27
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.18 E-value=2.3e-11 Score=94.55 Aligned_cols=64 Identities=28% Similarity=0.583 Sum_probs=53.4
Q ss_pred CCCCCCCCcccccccccccccceecCCCCcccHhhHHHHHhcC----CCCCCCCCcccccccccccch
Q psy7814 8 NNKLNLDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVK----GKNYCPIDEKVLTKDDIFIDN 71 (460)
Q Consensus 8 ~~~~~~~~~l~C~iC~~~l~~p~~~~CgH~fC~~Ci~~~~~~~----~~~~CP~Cr~~~~~~~~~~~~ 71 (460)
...+.+.+.+.|+||...+.+|+.++|||.||..|+..|+... +...||.||.++...++.++.
T Consensus 11 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~ 78 (85)
T 2ecw_A 11 SVLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNL 78 (85)
T ss_dssp CCCCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECS
T ss_pred HHHHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCH
Confidence 3455688899999999999999999999999999999999873 134699999998876665553
No 28
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=2.9e-11 Score=91.31 Aligned_cols=58 Identities=29% Similarity=0.641 Sum_probs=48.8
Q ss_pred CCCCCCCcccccccccccccceecCCCCcccHhhHHHHHhc-CCCCCCCCCcccccccc
Q psy7814 9 NKLNLDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDV-KGKNYCPIDEKVLTKDD 66 (460)
Q Consensus 9 ~~~~~~~~l~C~iC~~~l~~p~~~~CgH~fC~~Ci~~~~~~-~~~~~CP~Cr~~~~~~~ 66 (460)
....+.+.+.|+||...+.+|+.++|||.||..|+..|+.. .....||.||.++..++
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 13 FVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred HHHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 34567889999999999999999999999999999999863 22236999999987654
No 29
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.15 E-value=7.5e-12 Score=96.07 Aligned_cols=63 Identities=29% Similarity=0.628 Sum_probs=52.4
Q ss_pred CCCCCCCcccccccccccccceecCCCCcccHhhHHHHHhcC-----CCCCCCCCcccccccccccch
Q psy7814 9 NKLNLDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVK-----GKNYCPIDEKVLTKDDIFIDN 71 (460)
Q Consensus 9 ~~~~~~~~l~C~iC~~~l~~p~~~~CgH~fC~~Ci~~~~~~~-----~~~~CP~Cr~~~~~~~~~~~~ 71 (460)
..+.+++.+.|+||...+.+|+.++|||.||..|+.+|+... +...||.||.++...++.++.
T Consensus 5 ~~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~ 72 (79)
T 2egp_A 5 SSGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQ 72 (79)
T ss_dssp SSCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCS
T ss_pred hHhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCH
Confidence 345788899999999999999999999999999999998762 134699999998876655543
No 30
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.15 E-value=3.1e-11 Score=106.54 Aligned_cols=71 Identities=17% Similarity=0.259 Sum_probs=62.3
Q ss_pred CCCCCCcccccccccccccceecCCCCcccHhhHHHHHhcCCCCCCCCCcccccccccccchHHHHHHHhcc
Q psy7814 10 KLNLDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNYTRREILENN 81 (460)
Q Consensus 10 ~~~~~~~l~C~iC~~~l~~p~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~ 81 (460)
...+++.|.||||+.++.+||.++|||+||+.||..|+...+. .||.|+.++...++.|+..+.+.|....
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~-tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~ 170 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGH-FDPVTRSPLTQDQLIPNLAMKEVIDAFI 170 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCS-BCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCC-CCCCCcCCCChhhCcchHHHHHHHHHHH
Confidence 4577899999999999999999999999999999999987554 5999999999888888888877776543
No 31
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=3.4e-11 Score=93.61 Aligned_cols=63 Identities=30% Similarity=0.676 Sum_probs=52.7
Q ss_pred CCCCCCCcccccccccccccceecCCCCcccHhhHHHHHhc----CCCCCCCCCcccccccccccch
Q psy7814 9 NKLNLDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDV----KGKNYCPIDEKVLTKDDIFIDN 71 (460)
Q Consensus 9 ~~~~~~~~l~C~iC~~~l~~p~~~~CgH~fC~~Ci~~~~~~----~~~~~CP~Cr~~~~~~~~~~~~ 71 (460)
....+.+.+.|+||...+.+|+.++|||.||..|+..|+.. .+...||.||..+...++.++.
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~ 78 (85)
T 2ecv_A 12 ILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNR 78 (85)
T ss_dssp CCCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSC
T ss_pred HHHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccH
Confidence 44577889999999999999999999999999999999876 2234699999999876665543
No 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.14 E-value=1.5e-11 Score=99.01 Aligned_cols=61 Identities=28% Similarity=0.648 Sum_probs=52.1
Q ss_pred CCCCccccccccccccccee-cCCCCcccHhhHHHHHhcCCCCCCCCCcccccccccccchHH
Q psy7814 12 NLDPRFECSICLEYLKDAIL-TSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNYT 73 (460)
Q Consensus 12 ~~~~~l~C~iC~~~l~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~ 73 (460)
.+.+.+.|+||..++.+|+. ++|||.||..||.+|+...+. .||.||.++...++.+...+
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~-~CP~Cr~~~~~~~l~~~~~~ 79 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRA-QCPHCRAPLQLRELVNCRWA 79 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCS-BCTTTCCBCCGGGCEECTTH
T ss_pred cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcC-CCCCCCCcCCHHHhHhhHHH
Confidence 56678999999999999999 899999999999999987642 59999999987776555443
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.13 E-value=1.4e-11 Score=98.94 Aligned_cols=66 Identities=26% Similarity=0.642 Sum_probs=54.3
Q ss_pred CCCCcccccccccccccceec-CCCCcccHhhHHHHHhcCCCCCCCCCcccccccccccchHHHHHHHh
Q psy7814 12 NLDPRFECSICLEYLKDAILT-SCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNYTRREILE 79 (460)
Q Consensus 12 ~~~~~l~C~iC~~~l~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~ 79 (460)
.+++.+.|+||...+.+|+.+ +|||.||..|+..|+.... .||.||.++...++.++..+.+.+..
T Consensus 18 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~--~CP~Cr~~~~~~~l~~n~~l~~~i~~ 84 (99)
T 2y43_A 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKT--QCPTCCVTVTEPDLKNNRILDELVKS 84 (99)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCC--BCTTTCCBCCGGGCEECHHHHHHHHH
T ss_pred hCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCC--CCCCCCCcCChhhCCcCHHHHHHHHH
Confidence 345678999999999999987 9999999999999998654 49999999987777666666555443
No 34
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.13 E-value=2.6e-11 Score=101.64 Aligned_cols=67 Identities=21% Similarity=0.455 Sum_probs=53.2
Q ss_pred CCCCcccccccccccccceecCCCCcccHhhHHHHHhcCCCCCCCCCcccccc-cccccchHHHHHHHh
Q psy7814 12 NLDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTK-DDIFIDNYTRREILE 79 (460)
Q Consensus 12 ~~~~~l~C~iC~~~l~~p~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~-~~~~~~~~~~~~i~~ 79 (460)
.+++.+.|+||..++.+|+.++|||+||..||..|+.... ..||.||.++.. ..+.++..+...+..
T Consensus 48 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~~~~~~~n~~l~~~i~~ 115 (124)
T 3fl2_A 48 KVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQV-FSCPACRYDLGRSYAMQVNQPLQTVLNQ 115 (124)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTC-CBCTTTCCBCCTTCCCCCCHHHHHHHHH
T ss_pred hCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCc-CCCCCCCccCCCCCCCCCCHHHHHHHHH
Confidence 3456789999999999999999999999999999998544 259999999987 455555555444443
No 35
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=9.8e-11 Score=85.63 Aligned_cols=50 Identities=32% Similarity=0.716 Sum_probs=42.7
Q ss_pred CCCCCCCcccccccccccccceecCCCCcccHhhHHHHHhcC-CCCCCCCC
Q psy7814 9 NKLNLDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVK-GKNYCPID 58 (460)
Q Consensus 9 ~~~~~~~~l~C~iC~~~l~~p~~~~CgH~fC~~Ci~~~~~~~-~~~~CP~C 58 (460)
....+++.+.|+||.+.+.+|+.++|||.||..||.+|+... ....||.|
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 13 FVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 345678899999999999999999999999999999999842 22359987
No 36
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=3.2e-11 Score=90.58 Aligned_cols=57 Identities=23% Similarity=0.420 Sum_probs=48.5
Q ss_pred CCCCCCCCcccccccccccccceecCCCCcccHhhHHHHHhcCCCCCCCCCcccccccc
Q psy7814 8 NNKLNLDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDD 66 (460)
Q Consensus 8 ~~~~~~~~~l~C~iC~~~l~~p~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (460)
.+.....+.+.|+||++.+.+|+.++|||.||..|+.+|+.... .||+||..+....
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~--~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 7 GNTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGK--RCALCRQEIPEDF 63 (71)
T ss_dssp CCCCSSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSS--BCSSSCCBCCHHH
T ss_pred CCcccCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCC--cCcCcCchhCHhh
Confidence 34456677899999999999999999999999999999987654 4999999887543
No 37
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.08 E-value=9.5e-11 Score=112.26 Aligned_cols=71 Identities=15% Similarity=0.262 Sum_probs=62.0
Q ss_pred CCCCCCcccccccccccccceecCCCCcccHhhHHHHHhcCCCCCCCCCcccccccccccchHHHHHHHhcc
Q psy7814 10 KLNLDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNYTRREILENN 81 (460)
Q Consensus 10 ~~~~~~~l~C~iC~~~l~~p~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~ 81 (460)
...+++.|.||||..++.+||+++|||+||+.||.+|+...+. .||.|+.++...++.|+..+.+.|....
T Consensus 202 ~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~-~cP~~~~~~~~~~l~~n~~l~~~i~~~~ 272 (281)
T 2c2l_A 202 KRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGH-FNPVTRSPLTQEQLIPNLAMKEVIDAFI 272 (281)
T ss_dssp CCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCS-SCTTTCCCCCGGGCEECHHHHHHHHHHH
T ss_pred CCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCC-CCcCCCCCCchhcCcccHHHHHHHHHHH
Confidence 3467789999999999999999999999999999999987654 4999999999888889888887777654
No 38
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.08 E-value=4.8e-11 Score=103.22 Aligned_cols=66 Identities=26% Similarity=0.532 Sum_probs=53.5
Q ss_pred CCCcccccccccccccceecCCCCcccHhhHHHHHhcCCCCCCCCCcccccccccccchHHHHHHHh
Q psy7814 13 LDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNYTRREILE 79 (460)
Q Consensus 13 ~~~~l~C~iC~~~l~~p~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~ 79 (460)
+++.+.|+||..++.+|+.++|||+||..||..|+.... ..||.||.++.....++.+...+++..
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~~~~l~~n~~l~~lv~ 140 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQV-FSCPACRHDLGQNYIMIPNEILQTLLD 140 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTC-CBCTTTCCBCCTTCCCCBCHHHHHHHH
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCC-CcCCCCCccCCCCCCCCCCHHHHHHHH
Confidence 456789999999999999999999999999999998654 259999999987634455555555554
No 39
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.07 E-value=9e-11 Score=87.99 Aligned_cols=57 Identities=25% Similarity=0.618 Sum_probs=48.3
Q ss_pred CCCCCcccccccccccccc-------eecCCCCcccHhhHHHHHhcCCCCCCCCCccccccccccc
Q psy7814 11 LNLDPRFECSICLEYLKDA-------ILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFI 69 (460)
Q Consensus 11 ~~~~~~l~C~iC~~~l~~p-------~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (460)
....+.+.|+||.+.+.+| +.++|||.||..|+.+|+.... .||.||.++...++.+
T Consensus 5 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~--~CP~Cr~~~~~~~~~~ 68 (71)
T 3ng2_A 5 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN--TCPTCRKKINHKRYHP 68 (71)
T ss_dssp -CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCS--BCTTTCCBCCCCSCCC
T ss_pred CCCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCC--CCCCCCCccChhheee
Confidence 3566789999999999998 7789999999999999998765 4999999988765543
No 40
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=1.9e-10 Score=90.02 Aligned_cols=59 Identities=27% Similarity=0.634 Sum_probs=49.9
Q ss_pred CCCCCCCCCccccccccccccc----ceecCCCCcccHhhHHHHHhcC-CCCCCCCCccccccc
Q psy7814 7 ANNKLNLDPRFECSICLEYLKD----AILTSCGHKFCAACIDSWIDVK-GKNYCPIDEKVLTKD 65 (460)
Q Consensus 7 ~~~~~~~~~~l~C~iC~~~l~~----p~~~~CgH~fC~~Ci~~~~~~~-~~~~CP~Cr~~~~~~ 65 (460)
+.....+.+.+.|+||...+.+ |+.++|||.||..|+.+|+... +...||.||.++...
T Consensus 6 ~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 6 SGNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCSCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ccChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 3455678889999999999998 9999999999999999999875 123599999987754
No 41
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.07 E-value=7.7e-11 Score=96.21 Aligned_cols=65 Identities=31% Similarity=0.704 Sum_probs=51.9
Q ss_pred CCCCcccccccccccccceec-CCCCcccHhhHHHHHhcCCCCCCCCCccccccc----ccccchHHHHHHH
Q psy7814 12 NLDPRFECSICLEYLKDAILT-SCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKD----DIFIDNYTRREIL 78 (460)
Q Consensus 12 ~~~~~l~C~iC~~~l~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~----~~~~~~~~~~~i~ 78 (460)
.+++.+.|+||..++.+|+.+ +|||+||..||..|+.... .||.|+..+... .+.++..+.+.+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~--~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~ 80 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSK--YCPICDVQVHKTRPLLNIRSDKTLQDIVY 80 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCS--BCTTTCCBSCSSCGGGGEEECHHHHHHHH
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCC--cCcCCCccccccCcccccCcCHHHHHHHH
Confidence 467789999999999999996 9999999999999997654 499999998764 3444444444333
No 42
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.05 E-value=3.3e-11 Score=102.94 Aligned_cols=49 Identities=37% Similarity=0.918 Sum_probs=43.9
Q ss_pred CCcccccccccccccceecCCCCcccHhhHHHHHhcCCCCCCCCCcccccc
Q psy7814 14 DPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTK 64 (460)
Q Consensus 14 ~~~l~C~iC~~~l~~p~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (460)
.+++.|+||...+.+|+.++|||.||..||..|+.... .||.||.++..
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~--~CP~Cr~~~~~ 99 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKI--ECPICRKDIKS 99 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCS--BCTTTCCBCCC
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCC--cCCCCCCcCCC
Confidence 45688999999999999999999999999999987654 49999999875
No 43
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=2.1e-10 Score=85.37 Aligned_cols=55 Identities=25% Similarity=0.659 Sum_probs=47.1
Q ss_pred CCCCCCCCcccccccccccccc-------eecCCCCcccHhhHHHHHhcCCCCCCCCCcccccc
Q psy7814 8 NNKLNLDPRFECSICLEYLKDA-------ILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTK 64 (460)
Q Consensus 8 ~~~~~~~~~l~C~iC~~~l~~p-------~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (460)
+....+.+.+.|+||++.+.+| +.++|||.||..||.+|+.... .||+||.++..
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~--~CP~Cr~~~~~ 68 (69)
T 2ea6_A 7 GTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN--TCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCS--SCTTTCCCCCC
T ss_pred ccccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCC--CCCCCCCccCc
Confidence 3455678899999999999988 7789999999999999998754 49999998753
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.04 E-value=4.8e-11 Score=98.61 Aligned_cols=54 Identities=22% Similarity=0.629 Sum_probs=46.7
Q ss_pred CCCCCCcccccccccccccceecCCCCcccHhhHHHHHhcCCCCCCCCCcccccc
Q psy7814 10 KLNLDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTK 64 (460)
Q Consensus 10 ~~~~~~~l~C~iC~~~l~~p~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (460)
...+.+++.|+||...+.+|+.++|||+||..||.+|+.... ..||.||..+..
T Consensus 9 ~~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 62 (115)
T 3l11_A 9 AIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKAS-LCCPFCRRRVSS 62 (115)
T ss_dssp CCCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTT-SBCTTTCCBCHH
T ss_pred ccCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCc-CCCCCCCcccCc
Confidence 446777899999999999999999999999999999986544 359999998863
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.02 E-value=1.5e-10 Score=101.99 Aligned_cols=70 Identities=31% Similarity=0.538 Sum_probs=55.4
Q ss_pred CCCCCcccccccccccccceec-CCCCcccHhhHHHHHhcCCCCCCCCCcccccc-cccccchHHHHHHHhcc
Q psy7814 11 LNLDPRFECSICLEYLKDAILT-SCGHKFCAACIDSWIDVKGKNYCPIDEKVLTK-DDIFIDNYTRREILENN 81 (460)
Q Consensus 11 ~~~~~~l~C~iC~~~l~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~-~~~~~~~~~~~~i~~l~ 81 (460)
..+.+.+.|+||...+.+|+.+ +|||.||..||..|+..... .||.||.++.. ..+.++..+...+..+.
T Consensus 49 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~ 120 (165)
T 2ckl_B 49 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNK-ECPTCRKKLVSKRSLRPDPNFDALISKIY 120 (165)
T ss_dssp -CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCC-BCTTTCCBCCSGGGEEECHHHHHHHHHHC
T ss_pred hhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcC-CCCCCCCcCCCcccCCcCHHHHHHHHHHH
Confidence 3556778999999999999986 99999999999999986333 59999999865 45556666666565554
No 46
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=3.1e-10 Score=81.36 Aligned_cols=52 Identities=40% Similarity=0.944 Sum_probs=43.4
Q ss_pred CCCCCCCCCcccccccccccccceecCCCCcccHhhHHHHHhc-CCCCCCCCC
Q psy7814 7 ANNKLNLDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDV-KGKNYCPID 58 (460)
Q Consensus 7 ~~~~~~~~~~l~C~iC~~~l~~p~~~~CgH~fC~~Ci~~~~~~-~~~~~CP~C 58 (460)
+...+.+.+.+.|+||.+.+.+|+.++|||.||..||.+|+.. .....||+|
T Consensus 6 ~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 6 SGALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhHhhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3445577889999999999999999999999999999999764 223469987
No 47
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.00 E-value=1.9e-10 Score=84.60 Aligned_cols=54 Identities=22% Similarity=0.544 Sum_probs=44.7
Q ss_pred Cccccccccc-ccccce----ecCCCCcccHhhHHHHHhcCCCCCCCCCccccccccccc
Q psy7814 15 PRFECSICLE-YLKDAI----LTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFI 69 (460)
Q Consensus 15 ~~l~C~iC~~-~l~~p~----~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (460)
+++.|+||.. .+.+|. .++|||.||..|+.+|+.... ..||.||.++...++.+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~~~~~~ 60 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGA-GNCPECGTPLRKSNFRV 60 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTS-SSCTTTCCCCSSCCCEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCC-CcCCCCCCcccccccee
Confidence 4688999999 999994 579999999999999976543 35999999998766543
No 48
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.97 E-value=2.7e-10 Score=83.38 Aligned_cols=52 Identities=25% Similarity=0.681 Sum_probs=44.9
Q ss_pred Ccccccccccccccc-------eecCCCCcccHhhHHHHHhcCCCCCCCCCcccccccccc
Q psy7814 15 PRFECSICLEYLKDA-------ILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIF 68 (460)
Q Consensus 15 ~~l~C~iC~~~l~~p-------~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~ 68 (460)
+.+.|+||.+.+.+| +.++|||.||..|+.+|+.... .||.||.++...++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~--~CP~Cr~~~~~~~~~ 60 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN--TCPTCRKKINHKRYH 60 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCS--BCTTTCCBCTTTCEE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCC--CCCCCCccCCcccee
Confidence 467899999999988 6789999999999999998754 499999998876543
No 49
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.95 E-value=3e-10 Score=93.23 Aligned_cols=59 Identities=31% Similarity=0.700 Sum_probs=49.2
Q ss_pred CCCcccccccccccccceecCCCCcccHhhHHHHHhcCC-CCCCCCCcccccccccccch
Q psy7814 13 LDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKG-KNYCPIDEKVLTKDDIFIDN 71 (460)
Q Consensus 13 ~~~~l~C~iC~~~l~~p~~~~CgH~fC~~Ci~~~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 71 (460)
+.+.+.|+||...+.+|+.++|||.||..|+..|+.... ...||.||.++....+.++.
T Consensus 18 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 77 (112)
T 1jm7_A 18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQEST 77 (112)
T ss_dssp HHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCC
T ss_pred ccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccH
Confidence 455789999999999999999999999999999998642 23599999998876655543
No 50
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.95 E-value=1.3e-10 Score=96.34 Aligned_cols=63 Identities=25% Similarity=0.543 Sum_probs=52.0
Q ss_pred CCCCcccccccccccccceec-CCCCcccHhhHHHHHhcCCCCCCCCCcccccccccccchHHHHHHH
Q psy7814 12 NLDPRFECSICLEYLKDAILT-SCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNYTRREIL 78 (460)
Q Consensus 12 ~~~~~l~C~iC~~~l~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~ 78 (460)
.+.+.+.|+||..++.+|+.+ +|||+||..||..|+. . .||.||.++...++.++..+...+.
T Consensus 18 ~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~--~CP~Cr~~~~~~~~~~n~~l~~l~~ 81 (117)
T 1jm7_B 18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--T--GCPVCYTPAWIQDLKINRQLDSMIQ 81 (117)
T ss_dssp HHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--T--BCSSSCCBCSCSSCCCCHHHHHHHH
T ss_pred hchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--C--CCcCCCCcCccccccccHHHHHHHH
Confidence 456789999999999999998 9999999999999986 2 4999999997766666655544443
No 51
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.92 E-value=9.4e-10 Score=83.78 Aligned_cols=58 Identities=24% Similarity=0.512 Sum_probs=45.2
Q ss_pred CCCCCCCCcccccccccccc--cceecC--CCCcccHhhHHHHHhcCCCCCCCCCcccccccc
Q psy7814 8 NNKLNLDPRFECSICLEYLK--DAILTS--CGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDD 66 (460)
Q Consensus 8 ~~~~~~~~~l~C~iC~~~l~--~p~~~~--CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (460)
.....+++++.||||.+.+. ++...+ |||.||..|+.+++.... ..||.||.++....
T Consensus 3 ~~~~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~-~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 3 RSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDEN-GLCPACRKPYPEDP 64 (78)
T ss_dssp SCSCCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSC-SBCTTTCCBCSSCS
T ss_pred ccccccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCC-CCCCCCCCccCCCc
Confidence 34456788999999999884 444444 999999999999886533 35999999988644
No 52
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.91 E-value=1.1e-09 Score=83.59 Aligned_cols=60 Identities=25% Similarity=0.569 Sum_probs=48.2
Q ss_pred CCCCCCCCcccccccccccccce---ecCCCCcccHhhHHHHHhcCCCCCCCCCccccccccccc
Q psy7814 8 NNKLNLDPRFECSICLEYLKDAI---LTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFI 69 (460)
Q Consensus 8 ~~~~~~~~~l~C~iC~~~l~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (460)
...+...+.+.|+||+..+.++. .++|||.||..||.+|+.... .||+||..+...++.+
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 7 GTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHD--SCPVCRKSLTGQNTAT 69 (78)
T ss_dssp CCCTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTC--SCTTTCCCCCCSCSCC
T ss_pred CCcccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCC--cCcCcCCccCCcccCC
Confidence 34456777899999999998663 469999999999999997654 5999999988755443
No 53
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.86 E-value=1e-09 Score=101.47 Aligned_cols=67 Identities=16% Similarity=0.294 Sum_probs=57.3
Q ss_pred CCCCccccccccccccccee-cCCCCcccHhhHHHHHhcCCCCCCCC--CcccccccccccchHHHHHHH
Q psy7814 12 NLDPRFECSICLEYLKDAIL-TSCGHKFCAACIDSWIDVKGKNYCPI--DEKVLTKDDIFIDNYTRREIL 78 (460)
Q Consensus 12 ~~~~~l~C~iC~~~l~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~--Cr~~~~~~~~~~~~~~~~~i~ 78 (460)
.....+.||||+.++.+||. +.|||+||+.||..|+...+...||+ |+..+...++.++..+.+.+.
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve 246 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCK 246 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHH
Confidence 45678999999999999998 59999999999999998654446999 999998888888877765554
No 54
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=9.2e-10 Score=82.20 Aligned_cols=55 Identities=35% Similarity=0.776 Sum_probs=46.8
Q ss_pred CCCCCCCCCcccccccccccccceecCCCCcccHhhHHHHHhcCCCCCCCCCcccccc
Q psy7814 7 ANNKLNLDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTK 64 (460)
Q Consensus 7 ~~~~~~~~~~l~C~iC~~~l~~p~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (460)
......+.+.+.|+||...+.+ +.++|||.||..|+.+|+.... .||.||.++..
T Consensus 6 ~~~~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~--~CP~Cr~~~~~ 60 (70)
T 2ecn_A 6 SGRVKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHR--NCPICRLQMTG 60 (70)
T ss_dssp SCCCCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCS--SCHHHHHCTTC
T ss_pred hhhhhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcC--cCCCcCCcccC
Confidence 3445677888999999999999 7789999999999999987443 59999998875
No 55
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.82 E-value=4.7e-09 Score=78.03 Aligned_cols=54 Identities=30% Similarity=0.626 Sum_probs=44.3
Q ss_pred CCCCCCCcccccccccccc---cceecCCCCcccHhhHHHHHhcCCCCCCCCCcccccc
Q psy7814 9 NKLNLDPRFECSICLEYLK---DAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTK 64 (460)
Q Consensus 9 ~~~~~~~~l~C~iC~~~l~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (460)
..........|+||...+. .++.++|||.||..|+..|+.... .||.||..+..
T Consensus 7 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~ 63 (69)
T 2kiz_A 7 EGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNK--KCPICRVDIEA 63 (69)
T ss_dssp TCCSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCS--BCTTTCSBSCS
T ss_pred CcCcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCC--CCcCcCccccC
Confidence 3445667889999999885 345689999999999999998765 49999998875
No 56
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=4.5e-09 Score=79.28 Aligned_cols=54 Identities=26% Similarity=0.607 Sum_probs=45.5
Q ss_pred CCCCCCCccccccccccccccee---cCCCCcccHhhHHHHHhcCCCCCCCCCcccccc
Q psy7814 9 NKLNLDPRFECSICLEYLKDAIL---TSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTK 64 (460)
Q Consensus 9 ~~~~~~~~l~C~iC~~~l~~p~~---~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (460)
....+.+...|+||++.+.++.. ++|||.||..||.+|+.... .||+||.++..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~--~CP~Cr~~~~~ 64 (74)
T 2ep4_A 8 KVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK--VCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCS--BCTTTCCBCSS
T ss_pred ccccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCC--cCCCcCccccc
Confidence 44567778999999999987754 39999999999999998765 49999998764
No 57
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.79 E-value=1.5e-09 Score=77.19 Aligned_cols=46 Identities=26% Similarity=0.538 Sum_probs=39.8
Q ss_pred CCcccccccccccccceecCCCCcccHhhHHHHHhcCCCCCCCCCcccccc
Q psy7814 14 DPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTK 64 (460)
Q Consensus 14 ~~~l~C~iC~~~l~~p~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (460)
.+.+.|+||...+.+|+.++|||+||..|+..+ . ..||.||..+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~-~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----G-MQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----S-SSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----C-CCCCcCCcEeec
Confidence 467889999999999999999999999998772 2 359999998775
No 58
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.78 E-value=3.1e-09 Score=75.19 Aligned_cols=49 Identities=37% Similarity=0.897 Sum_probs=41.2
Q ss_pred CCCccccccccccccc---ceecC-CCCcccHhhHHHHHhcCCCCCCCCCccccc
Q psy7814 13 LDPRFECSICLEYLKD---AILTS-CGHKFCAACIDSWIDVKGKNYCPIDEKVLT 63 (460)
Q Consensus 13 ~~~~l~C~iC~~~l~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (460)
+++...|+||.+.+.+ ++.++ |||.||..|+.+|+.... .||.||.++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~--~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS--TCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCC--SCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCC--cCcCCCCEeE
Confidence 4567889999999987 66665 999999999999987654 4999998764
No 59
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.78 E-value=4e-09 Score=74.61 Aligned_cols=47 Identities=26% Similarity=0.544 Sum_probs=40.3
Q ss_pred Cccccccccccccc----ceecCCCCcccHhhHHHHHhcCCCCCCCCCccccc
Q psy7814 15 PRFECSICLEYLKD----AILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLT 63 (460)
Q Consensus 15 ~~l~C~iC~~~l~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (460)
+...|+||.+.+.+ ++.++|||.||..|+.+|+.... .||.||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~--~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGY--RCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTC--CCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCC--cCCCCCCcCC
Confidence 46789999999866 66689999999999999998774 5999998764
No 60
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.78 E-value=3.7e-09 Score=78.35 Aligned_cols=48 Identities=31% Similarity=0.700 Sum_probs=41.5
Q ss_pred Ccccccccccccccc-eecCCCCcccHhhHHHHHhcCCCCCCCCCcccccc
Q psy7814 15 PRFECSICLEYLKDA-ILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTK 64 (460)
Q Consensus 15 ~~l~C~iC~~~l~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (460)
....|+||...+.+| +.++|||.||..|+.+|+.... .||.||.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNP--TCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSC--STTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcC--cCcCCChhhHh
Confidence 456899999999997 5589999999999999998665 49999998764
No 61
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.73 E-value=7.2e-09 Score=81.61 Aligned_cols=51 Identities=24% Similarity=0.617 Sum_probs=43.0
Q ss_pred CCCCccccccccccccc---ceecCCCCcccHhhHHHHHhcCCCCCCCCCcccccc
Q psy7814 12 NLDPRFECSICLEYLKD---AILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTK 64 (460)
Q Consensus 12 ~~~~~l~C~iC~~~l~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (460)
...+...|+||+..+.. ++.++|||.||..||..|+.... .||.||.++..
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~--~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSG--TCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTC--BCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCC--cCcCcCccCCC
Confidence 45677899999998876 66789999999999999997655 49999988754
No 62
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.73 E-value=4.9e-09 Score=88.47 Aligned_cols=53 Identities=25% Similarity=0.642 Sum_probs=45.8
Q ss_pred CCCcccccccccccccc-------eecCCCCcccHhhHHHHHhcCCCCCCCCCccccccccc
Q psy7814 13 LDPRFECSICLEYLKDA-------ILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDI 67 (460)
Q Consensus 13 ~~~~l~C~iC~~~l~~p-------~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 67 (460)
..+.+.|+||++.+.+| +.++|||.||..||.+|+..+. .||.||..+....+
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~--~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 4 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN--TCPTCRKKINHKRY 63 (133)
T ss_dssp -CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCS--BCTTTCCBCTTTCE
T ss_pred CCCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCC--CCCCCCCcCccccc
Confidence 35678999999999999 7899999999999999998665 49999999886554
No 63
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=7.4e-09 Score=78.36 Aligned_cols=51 Identities=24% Similarity=0.619 Sum_probs=43.2
Q ss_pred CCCCcccccccccccccc---eecCCCCcccHhhHHHHHhcCCCCCCCCCcccccc
Q psy7814 12 NLDPRFECSICLEYLKDA---ILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTK 64 (460)
Q Consensus 12 ~~~~~l~C~iC~~~l~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (460)
...+...|+||++.+..+ +.++|||.||..|+.+|+.... .||+||.++..
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~--~CP~Cr~~~~~ 72 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANR--TCPICRADSGP 72 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCS--SCTTTCCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCC--cCcCcCCcCCC
Confidence 345678899999999877 4579999999999999998765 49999998765
No 64
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.70 E-value=7.3e-09 Score=74.80 Aligned_cols=54 Identities=17% Similarity=0.321 Sum_probs=47.4
Q ss_pred cccccccccccccceec-CCCCcccHhhHHHHHhcCCCCCCCCCcccccccccccch
Q psy7814 16 RFECSICLEYLKDAILT-SCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDN 71 (460)
Q Consensus 16 ~l~C~iC~~~l~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 71 (460)
.|.|||+++++.+||.+ ++||+|++.||.+|+...+. ||+.+.++...++.+..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~--cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGN--DPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSB--CTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCC--CcCCcCCCChhhcEECc
Confidence 58899999999999998 99999999999999987653 99999999887776543
No 65
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=98.60 E-value=2.4e-08 Score=75.70 Aligned_cols=64 Identities=25% Similarity=0.440 Sum_probs=57.5
Q ss_pred cccccccccccccccCCCcccccCCCCCCCCCCCCCCccCCCCccccccchhhhhhhcCCCCCccccccccccccccccc
Q psy7814 96 PEYESHVNTCYLKYSQPSVEDITDSPTSSFRNTSGIPTNKRNSKILTVTVFPEHLNMQGSSNENFPCKFYQVGCREVFKS 175 (460)
Q Consensus 96 ~~l~~H~~~C~~~~~~C~~~~~~~h~~c~~~~~~~~~~~~~c~~~~~r~~l~~H~~~~c~~~~~v~Cp~~~~GC~~~~~r 175 (460)
.+|+.|+..|+|..|.|| ..|+..+.|.+|..|+...|+ ...+.|+| |...+.+
T Consensus 3 ~~l~~H~~~C~~~~v~C~---------------------~~C~~~v~r~~l~~H~~~~C~-~r~v~C~~----C~~~~~~ 56 (76)
T 2yuc_A 3 SGSSGHLNTCSFNVIPCP---------------------NRCPMKLSRRDLPAHLQHDCP-KRRLKCEF----CGCDFSG 56 (76)
T ss_dssp CSCSCCCCCCCCSCCBCT---------------------TCCSCBCCSSSSTTTTTTSCT-TSCCCCSS----SCCCCCH
T ss_pred hHHHHHHHHCCCcccCCC---------------------ccccHHhhHhHHHhhCHhhCC-CcceECCC----CCCccCH
Confidence 468899999999999996 489999999999999988887 77999999 9999999
Q ss_pred hhHHHHHhhhc
Q psy7814 176 QALLEKHYDLK 186 (460)
Q Consensus 176 ~~~l~~H~~~~ 186 (460)
.+ |+.|.+++
T Consensus 57 ~~-l~~H~~~C 66 (76)
T 2yuc_A 57 EA-YESHEGMC 66 (76)
T ss_dssp HH-HHHTTTSC
T ss_pred HH-HHHHHhHC
Confidence 99 99998654
No 66
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.55 E-value=4.5e-08 Score=80.40 Aligned_cols=50 Identities=32% Similarity=0.592 Sum_probs=40.2
Q ss_pred Ccccccccccccccce------------------ecCCCCcccHhhHHHHHhcC---CCCCCCCCcccccc
Q psy7814 15 PRFECSICLEYLKDAI------------------LTSCGHKFCAACIDSWIDVK---GKNYCPIDEKVLTK 64 (460)
Q Consensus 15 ~~l~C~iC~~~l~~p~------------------~~~CgH~fC~~Ci~~~~~~~---~~~~CP~Cr~~~~~ 64 (460)
.+..|+||++.+.+|. .++|||.||..||..|+... ....||+||..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 3568999999997764 57999999999999999642 22369999998764
No 67
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.53 E-value=3.9e-08 Score=82.85 Aligned_cols=54 Identities=24% Similarity=0.640 Sum_probs=46.6
Q ss_pred CCcccccccccccccc-------eecCCCCcccHhhHHHHHhcCCCCCCCCCccccccccccc
Q psy7814 14 DPRFECSICLEYLKDA-------ILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFI 69 (460)
Q Consensus 14 ~~~l~C~iC~~~l~~p-------~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (460)
++.+.|+||...+.+| +.++|||.||..|+.+|+.... .||.||.++..+++.+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~--~CP~Cr~~~~~~~~~~ 130 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN--TCPTCRKKINHKRYHP 130 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCS--BCTTTCCBCCGGGEEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCC--CCCCCCCcCChhccee
Confidence 4678899999999987 7789999999999999998765 4999999998766543
No 68
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.51 E-value=2.1e-08 Score=75.61 Aligned_cols=47 Identities=28% Similarity=0.645 Sum_probs=41.1
Q ss_pred CCCCcccccccccccccceecCCCCc-ccHhhHHHHHhcCCCCCCCCCcccccc
Q psy7814 12 NLDPRFECSICLEYLKDAILTSCGHK-FCAACIDSWIDVKGKNYCPIDEKVLTK 64 (460)
Q Consensus 12 ~~~~~l~C~iC~~~l~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (460)
.+.+.+.|+||.+.+.+|+.++|||. ||..|+..| . .||.||.++..
T Consensus 20 ~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~--~CP~Cr~~i~~ 67 (74)
T 4ic3_A 20 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----D--KCPMCYTVITF 67 (74)
T ss_dssp HHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----S--BCTTTCCBCSE
T ss_pred cCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----c--cCCCcCcCccC
Confidence 34567899999999999999999999 999999987 2 49999998874
No 69
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=1.2e-07 Score=72.73 Aligned_cols=49 Identities=22% Similarity=0.638 Sum_probs=40.2
Q ss_pred Cccccccccccccc--------------cee-cCCCCcccHhhHHHHHhcCCCCCCCCCccccccc
Q psy7814 15 PRFECSICLEYLKD--------------AIL-TSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKD 65 (460)
Q Consensus 15 ~~l~C~iC~~~l~~--------------p~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (460)
++-.|+||++.+.+ ++. ..|||.|+..||.+|+.... .||+||.++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~--~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN--RCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC--BCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC--CCCCcCCCcchh
Confidence 45669999999976 344 46999999999999998765 499999987653
No 70
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.40 E-value=1.1e-07 Score=69.41 Aligned_cols=49 Identities=20% Similarity=0.440 Sum_probs=42.0
Q ss_pred CCcccccccccccccceec--CCCCc-ccHhhHHHHHhcCCCCCCCCCcccccc
Q psy7814 14 DPRFECSICLEYLKDAILT--SCGHK-FCAACIDSWIDVKGKNYCPIDEKVLTK 64 (460)
Q Consensus 14 ~~~l~C~iC~~~l~~p~~~--~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (460)
+++..|+||.+...+++.+ +|||. ||..|+.++...+. .||+||.++..
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~--~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNK--PCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTC--CCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCC--cCCCcCcchhc
Confidence 3567899999999999976 99999 89999999987554 49999998763
No 71
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=5.9e-08 Score=73.34 Aligned_cols=46 Identities=28% Similarity=0.672 Sum_probs=39.4
Q ss_pred CCCcccccccccccccceecCCCCc-ccHhhHHHHHhcCCCCCCCCCcccccc
Q psy7814 13 LDPRFECSICLEYLKDAILTSCGHK-FCAACIDSWIDVKGKNYCPIDEKVLTK 64 (460)
Q Consensus 13 ~~~~l~C~iC~~~l~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (460)
+.+.+.|+||.+.+.+|+.++|||. ||..|+.+. ..||.||.++..
T Consensus 22 ~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 22 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV------DKCPMCYTVITF 68 (75)
T ss_dssp HHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC------SBCTTTCCBCCC
T ss_pred CCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC------CCCccCCceecC
Confidence 3457889999999999999999999 999999643 249999998875
No 72
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.36 E-value=1.9e-07 Score=91.85 Aligned_cols=49 Identities=33% Similarity=0.758 Sum_probs=42.8
Q ss_pred cccccccccccccceecCCCCcccHhhHHHHHhcCCCCCCCCCccccccc
Q psy7814 16 RFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKD 65 (460)
Q Consensus 16 ~l~C~iC~~~l~~p~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (460)
...|+||.+.+.+|+.++|||.||..|+..|+..... .||.||.++...
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~-~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQ-GCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCS-BCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCC-CCCCCCCccCCc
Confidence 4789999999999999999999999999999874332 599999998764
No 73
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.33 E-value=2e-07 Score=67.75 Aligned_cols=48 Identities=25% Similarity=0.459 Sum_probs=41.1
Q ss_pred Ccccccccccccccceec--CCCCc-ccHhhHHHHHhcCCCCCCCCCcccccc
Q psy7814 15 PRFECSICLEYLKDAILT--SCGHK-FCAACIDSWIDVKGKNYCPIDEKVLTK 64 (460)
Q Consensus 15 ~~l~C~iC~~~l~~p~~~--~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (460)
....|+||.+...+++.+ +|||. ||..|+.++...++ .||+||.++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~--~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGA--SCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTC--BCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCC--cCCCcCchhhc
Confidence 356799999999999876 99998 99999999987654 49999998863
No 74
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=3.5e-07 Score=71.25 Aligned_cols=50 Identities=16% Similarity=0.259 Sum_probs=45.4
Q ss_pred CCCCccccccchhhhhhhcCCCCCccccccccccccccccchhHHHHHhhhch
Q psy7814 135 KRNSKILTVTVFPEHLNMQGSSNENFPCKFYQVGCREVFKSQALLEKHYDLKT 187 (460)
Q Consensus 135 ~~c~~~~~r~~l~~H~~~~c~~~~~v~Cp~~~~GC~~~~~r~~~l~~H~~~~~ 187 (460)
..|+..+.|.++.+|+.. || ++.++|+|+.+||.+++.|.+ |.+|++.+.
T Consensus 42 ~~Cga~i~rckL~EH~~~-CP-~a~v~C~~~~yGCp~~~~R~~-L~~He~~CP 91 (100)
T 2yre_A 42 LVCGAVFHSCKADEHRLL-CP-FERVPCLNSDFGCPFTMARNK-VAEHLEMCP 91 (100)
T ss_dssp TCCSCEEEHHHHHHHHHH-CS-SSEEECTTTTTTCCCEEESST-HHHHHHTCG
T ss_pred cccCCeeehhhHHHHHhh-cc-cccccccccCcCCceeecHHH-HHHHHhhCC
Confidence 478889999999999966 76 899999999999999999999 999998764
No 75
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.21 E-value=3.2e-07 Score=72.51 Aligned_cols=50 Identities=26% Similarity=0.605 Sum_probs=39.9
Q ss_pred Ccccccccccccccceec---CCCCcccHhhHHHHHhcC---C---CCCCCC--Cccc--ccc
Q psy7814 15 PRFECSICLEYLKDAILT---SCGHKFCAACIDSWIDVK---G---KNYCPI--DEKV--LTK 64 (460)
Q Consensus 15 ~~l~C~iC~~~l~~p~~~---~CgH~fC~~Ci~~~~~~~---~---~~~CP~--Cr~~--~~~ 64 (460)
+.+.|+||.+.+..|+.+ .|||.||..||..++... + ...||. |+.. +..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 66 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence 478899999999888753 699999999999998742 1 236999 9887 554
No 76
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=9.5e-07 Score=65.17 Aligned_cols=46 Identities=20% Similarity=0.652 Sum_probs=39.3
Q ss_pred CCCcccccccccccccceecCCCCc-ccHhhHHHHHhcCCCCCCCCCcccccc
Q psy7814 13 LDPRFECSICLEYLKDAILTSCGHK-FCAACIDSWIDVKGKNYCPIDEKVLTK 64 (460)
Q Consensus 13 ~~~~l~C~iC~~~l~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (460)
..+...|+||+....+++.++|||. ||..|+... ..||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~------~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF------QQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC------SSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC------CCCCCCCcchhc
Confidence 3357889999999999999999999 999999842 249999998875
No 77
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.16 E-value=1.3e-06 Score=70.36 Aligned_cols=47 Identities=28% Similarity=0.723 Sum_probs=39.0
Q ss_pred cccccccccccccc-----------------ee-cCCCCcccHhhHHHHHhcCCCCCCCCCcccccc
Q psy7814 16 RFECSICLEYLKDA-----------------IL-TSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTK 64 (460)
Q Consensus 16 ~l~C~iC~~~l~~p-----------------~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (460)
.-.|+||...+.++ +. ++|||.|+..||.+|+.... .||+||.++..
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~--~CP~Cr~~~~~ 101 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ--VCPLDNREWEF 101 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCS--BCSSSCSBCCE
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCC--cCcCCCCccee
Confidence 45799999998865 33 69999999999999998754 49999998653
No 78
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.15 E-value=2e-07 Score=71.05 Aligned_cols=46 Identities=24% Similarity=0.637 Sum_probs=40.1
Q ss_pred CCCcccccccccccccceecCCCCc-ccHhhHHHHHhcCCCCCCCCCcccccc
Q psy7814 13 LDPRFECSICLEYLKDAILTSCGHK-FCAACIDSWIDVKGKNYCPIDEKVLTK 64 (460)
Q Consensus 13 ~~~~l~C~iC~~~l~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (460)
+.+...|+||...+.+|+.++|||. ||..|+..+. .||.||.++..
T Consensus 15 l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~------~CP~Cr~~i~~ 61 (79)
T 2yho_A 15 LKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ------SCPVCRSRVEH 61 (79)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS------BCTTTCCBCCE
T ss_pred CCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC------cCCCCCchhhC
Confidence 4556789999999999999999999 9999998762 49999998875
No 79
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=98.10 E-value=1.8e-06 Score=65.23 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=52.4
Q ss_pred ccccCCCCCCCceeeccccccccc-cccccccCCCcccccCCCCCCCCCCCCCCccCCCCccccccchhhhhhhcCCCCC
Q psy7814 80 NNLTCPYKQCSSQLSIPEYESHVN-TCYLKYSQPSVEDITDSPTSSFRNTSGIPTNKRNSKILTVTVFPEHLNMQGSSNE 158 (460)
Q Consensus 80 l~v~C~n~gC~~~~~l~~l~~H~~-~C~~~~~~C~~~~~~~h~~c~~~~~~~~~~~~~c~~~~~r~~l~~H~~~~c~~~~ 158 (460)
..|.||+ +|+..+...+++.|+. .|+++.+.|+ .|+..+.+.+|..|.. .|| ..
T Consensus 15 ~~v~C~~-~C~~~v~r~~l~~H~~~~C~~r~v~C~----------------------~C~~~~~~~~l~~H~~-~Cp-~~ 69 (76)
T 2yuc_A 15 NVIPCPN-RCPMKLSRRDLPAHLQHDCPKRRLKCE----------------------FCGCDFSGEAYESHEG-MCP-QE 69 (76)
T ss_dssp SCCBCTT-CCSCBCCSSSSTTTTTTSCTTSCCCCS----------------------SSCCCCCHHHHHHTTT-SCT-TS
T ss_pred cccCCCc-cccHHhhHhHHHhhCHhhCCCcceECC----------------------CCCCccCHHHHHHHHh-HCC-CC
Confidence 4588987 9999999999999996 9999999995 6999999999999984 565 67
Q ss_pred cccccc
Q psy7814 159 NFPCKF 164 (460)
Q Consensus 159 ~v~Cp~ 164 (460)
.+.||+
T Consensus 70 ~v~C~~ 75 (76)
T 2yuc_A 70 SSGPSS 75 (76)
T ss_dssp SCCCSC
T ss_pred ccCCCC
Confidence 888885
No 80
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.01 E-value=8.3e-06 Score=62.03 Aligned_cols=55 Identities=20% Similarity=0.480 Sum_probs=43.5
Q ss_pred CCCCCccccccccccc--ccceecCCC-----CcccHhhHHHHHhcCCCCCCCCCccccccc
Q psy7814 11 LNLDPRFECSICLEYL--KDAILTSCG-----HKFCAACIDSWIDVKGKNYCPIDEKVLTKD 65 (460)
Q Consensus 11 ~~~~~~l~C~iC~~~l--~~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (460)
....+...|.||+..+ .+++.++|. |.|...||.+|+...+...||+|+..+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 10 ITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CCCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 3445567899999876 357777885 999999999999876544699999988753
No 81
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.93 E-value=1.5e-06 Score=85.02 Aligned_cols=46 Identities=26% Similarity=0.710 Sum_probs=40.6
Q ss_pred CCCcccccccccccccceecCCCCc-ccHhhHHHHHhcCCCCCCCCCcccccc
Q psy7814 13 LDPRFECSICLEYLKDAILTSCGHK-FCAACIDSWIDVKGKNYCPIDEKVLTK 64 (460)
Q Consensus 13 ~~~~l~C~iC~~~l~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (460)
+.+.+.|+||...+.+|+.++|||. ||..|+..+ . .||.||.++..
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~--~CP~CR~~i~~ 338 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----R--KCPICRGIIKG 338 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----S--BCTTTCCBCCE
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----C--cCCCCCCCccC
Confidence 3467899999999999999999999 999999977 2 49999998874
No 82
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.79 E-value=3e-06 Score=69.29 Aligned_cols=45 Identities=29% Similarity=0.794 Sum_probs=0.0
Q ss_pred ccccccccccccc-----------------ee-cCCCCcccHhhHHHHHhcCCCCCCCCCccccc
Q psy7814 17 FECSICLEYLKDA-----------------IL-TSCGHKFCAACIDSWIDVKGKNYCPIDEKVLT 63 (460)
Q Consensus 17 l~C~iC~~~l~~p-----------------~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (460)
-.|+||++.+.++ +. ++|+|.|+..||.+|+.... .||+||.++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~--~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ--VCPLDNREWE 111 (117)
T ss_dssp -----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCC--cCCCCCCeee
Confidence 4799999998764 22 48999999999999998754 5999998865
No 83
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.68 E-value=2.6e-05 Score=60.54 Aligned_cols=79 Identities=22% Similarity=0.372 Sum_probs=57.1
Q ss_pred cccccccccccce-ecCCCCcccHhhHHHHHhcCCCCCCCCCcccccccccccchHHHHHHHhccccCC-CCCCCc-eee
Q psy7814 18 ECSICLEYLKDAI-LTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNYTRREILENNLTCP-YKQCSS-QLS 94 (460)
Q Consensus 18 ~C~iC~~~l~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~-n~gC~~-~~~ 94 (460)
.|++|..++..=. ..+|.|.||.+|+..|...+.. .||.|+.++..-+..+. .-..-|+ ..||.. ...
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k-~Cp~C~~~V~rVe~~~~--------~~if~C~~~~~CkrtyLs 73 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDK-MCPGCSDPVQRIEQCTR--------GSLFMCSIVQGCKRTYLS 73 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCC-BCTTTCCBCSEEEEEEG--------GGCCCCCCCCCCCCCCSS
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCC-CCcCcCCeeeeeEEecc--------CCEEECCCCCCHHHHhcC
Confidence 5999999887644 4799999999999998765543 49999998875221111 2234587 589984 567
Q ss_pred ccccccccccc
Q psy7814 95 IPEYESHVNTC 105 (460)
Q Consensus 95 l~~l~~H~~~C 105 (460)
..+|+.|.+-.
T Consensus 74 ~rdlqaHI~~~ 84 (101)
T 3vk6_A 74 QRDLQAHINHR 84 (101)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77888887543
No 84
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.51 E-value=0.00012 Score=54.43 Aligned_cols=51 Identities=20% Similarity=0.489 Sum_probs=41.0
Q ss_pred CCcccccccccccccceec-CCCCcccHhhHHHHHhcCCCCCCCCCcccccc
Q psy7814 14 DPRFECSICLEYLKDAILT-SCGHKFCAACIDSWIDVKGKNYCPIDEKVLTK 64 (460)
Q Consensus 14 ~~~l~C~iC~~~l~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (460)
+..-.|.||..++..-... .|+|.|=..||.+|++......||.|+.....
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 3446799999999855554 89999999999999987643469999988653
No 85
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.00 E-value=9.1e-05 Score=55.50 Aligned_cols=62 Identities=16% Similarity=0.191 Sum_probs=53.0
Q ss_pred ccccccc-ccccccccCCCcccccCCCCCCCCCCCCCCccCCCCccccccchhhhhhhcCCCCCcccccccccccccccc
Q psy7814 96 PEYESHV-NTCYLKYSQPSVEDITDSPTSSFRNTSGIPTNKRNSKILTVTVFPEHLNMQGSSNENFPCKFYQVGCREVFK 174 (460)
Q Consensus 96 ~~l~~H~-~~C~~~~~~C~~~~~~~h~~c~~~~~~~~~~~~~c~~~~~r~~l~~H~~~~c~~~~~v~Cp~~~~GC~~~~~ 174 (460)
.+|..|. ..|++.++.|+ .|+..+.+.+|..|. ..|+ ..++.|++ |...+.
T Consensus 3 ~~L~~H~~~~c~~r~~~C~----------------------~C~~~~~~~~L~~H~-~~c~-~~~~~C~~----C~~~~~ 54 (75)
T 2d9k_A 3 SGSSGHEETECPLRLAVCQ----------------------HCDLELSILKLKEHE-DYCG-ARTELCGN----CGRNVL 54 (75)
T ss_dssp CCCSCCCCCCCCCCCEECS----------------------SSCCEECHHHHHHHH-HHHH-HCEEECSS----SCCEEE
T ss_pred hHHHhhCcccCCCcccCCc----------------------ccChHhhHHHHHHHH-hHcC-CCceEccc----CCCcCc
Confidence 4678898 48999999995 799999999999999 6676 77999998 999999
Q ss_pred chhHHHHHhhhc
Q psy7814 175 SQALLEKHYDLK 186 (460)
Q Consensus 175 r~~~l~~H~~~~ 186 (460)
+.+ |..|+..+
T Consensus 55 ~~~-l~~H~~~c 65 (75)
T 2d9k_A 55 VKD-LKTHPEVC 65 (75)
T ss_dssp TTG-GGTHHHHB
T ss_pred HHH-HHHHHHHc
Confidence 988 99998754
No 86
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.85 E-value=0.00091 Score=47.58 Aligned_cols=48 Identities=25% Similarity=0.587 Sum_probs=37.2
Q ss_pred cccccccccccccceecCCC--C---cccHhhHHHHHhcCCCCCCCCCccccc
Q psy7814 16 RFECSICLEYLKDAILTSCG--H---KFCAACIDSWIDVKGKNYCPIDEKVLT 63 (460)
Q Consensus 16 ~l~C~iC~~~l~~p~~~~Cg--H---~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (460)
.-.|.||+....+|...+|. + .|=..|+.+|+..++...||+|+.++.
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45699999877667666653 4 788999999998754456999998875
No 87
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.34 E-value=0.0011 Score=51.57 Aligned_cols=54 Identities=17% Similarity=0.232 Sum_probs=44.5
Q ss_pred cccCCCCCCCceeeccccccccccccccccCCCcccccCCCCCCCCCCCCCCccCCCCccccccchhhhhhhc
Q psy7814 81 NLTCPYKQCSSQLSIPEYESHVNTCYLKYSQPSVEDITDSPTSSFRNTSGIPTNKRNSKILTVTVFPEHLNMQ 153 (460)
Q Consensus 81 ~v~C~n~gC~~~~~l~~l~~H~~~C~~~~~~C~~~~~~~h~~c~~~~~~~~~~~~~c~~~~~r~~l~~H~~~~ 153 (460)
.|.||| .|...+...+++.|...|+...++|++. ..+|...+.|.+|..|++.+
T Consensus 37 ~i~CP~-~Cga~i~rckL~EH~~~CP~a~v~C~~~------------------~yGCp~~~~R~~L~~He~~C 90 (100)
T 2yre_A 37 LIGCPL-VCGAVFHSCKADEHRLLCPFERVPCLNS------------------DFGCPFTMARNKVAEHLEMC 90 (100)
T ss_dssp EEECTT-CCSCEEEHHHHHHHHHHCSSSEEECTTT------------------TTTCCCEEESSTHHHHHHTC
T ss_pred eeeCCc-ccCCeeehhhHHHHHhhccccccccccc------------------CcCCceeecHHHHHHHHhhC
Confidence 477986 8988999999999999999999998611 24788889999999998643
No 88
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=96.08 E-value=0.0058 Score=66.35 Aligned_cols=68 Identities=15% Similarity=0.187 Sum_probs=60.4
Q ss_pred CCCCCcccccccccccccceecCCC-CcccHhhHHHHHhcCCCCCCCCCcccccccccccchHHHHHHHhc
Q psy7814 11 LNLDPRFECSICLEYLKDAILTSCG-HKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNYTRREILEN 80 (460)
Q Consensus 11 ~~~~~~l~C~iC~~~l~~p~~~~Cg-H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 80 (460)
..+++.|.|||-..++.|||.++.| ++|=+..|.+|+...+ +||.-|.++...++.|+..+.+.|..+
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~--tdP~Tr~~L~~~~liPN~~Lk~~I~~w 954 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDS--TDPFNRMPLKLEDVTPNEELRQKILCF 954 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCC--BCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCC--CCCCCCCCCCcccccccHHHHHHHHHH
Confidence 4788899999999999999999997 6999999999998744 599999999988889998888877754
No 89
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.04 E-value=0.0023 Score=61.27 Aligned_cols=51 Identities=25% Similarity=0.694 Sum_probs=39.1
Q ss_pred CCccccccccccccc----cee----cCCCCcccHhhHHHHHhcCCC---------CCCCCCcccccc
Q psy7814 14 DPRFECSICLEYLKD----AIL----TSCGHKFCAACIDSWIDVKGK---------NYCPIDEKVLTK 64 (460)
Q Consensus 14 ~~~l~C~iC~~~l~~----p~~----~~CgH~fC~~Ci~~~~~~~~~---------~~CP~Cr~~~~~ 64 (460)
...-.|+||...+.+ |.. ..|||.|-..|+.+|++.... ..||.|+.+++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 345679999998876 432 379999999999999975211 249999998774
No 90
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=95.80 E-value=0.0027 Score=56.63 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=3.2
Q ss_pred HhccccCCC--CCCCceeeccccccccccccccccCCC
Q psy7814 78 LENNLTCPY--KQCSSQLSIPEYESHVNTCYLKYSQPS 113 (460)
Q Consensus 78 ~~l~v~C~n--~gC~~~~~l~~l~~H~~~C~~~~~~C~ 113 (460)
..+.+.|+| .||.+.....+...|...|+|++..||
T Consensus 3 ~s~~~pC~~~~~GC~~~~~y~~~~~He~~C~f~p~~Cp 40 (193)
T 2a25_A 3 NSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCP 40 (193)
T ss_dssp ---------------------------------CEECC
T ss_pred cceEecCCCCCCCCCcccccccccchhhcCCCCCccCC
Confidence 457789999 799999999999999999998876664
No 91
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=95.06 E-value=0.0081 Score=52.31 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=45.2
Q ss_pred ccccCCCCCCCceeecccccccc-ccccccccCCCcccccCCCCCCCCCCCCCCccCCCCccccccchhhhhhhcC
Q psy7814 80 NNLTCPYKQCSSQLSIPEYESHV-NTCYLKYSQPSVEDITDSPTSSFRNTSGIPTNKRNSKILTVTVFPEHLNMQG 154 (460)
Q Consensus 80 l~v~C~n~gC~~~~~l~~l~~H~-~~C~~~~~~C~~~~~~~h~~c~~~~~~~~~~~~~c~~~~~r~~l~~H~~~~c 154 (460)
..|.|+ ||++.+...++..|+ ..|+++.+.|+ .|+..+++.++..|.+.++
T Consensus 109 ~~v~C~--~C~~~~~r~~l~~H~~~~C~~r~~~C~----------------------~C~~~~~~~~l~~H~~~~~ 160 (170)
T 3hcs_A 109 ALMDCP--QCQRPFQKFHINIHILKDCPRRQVSCD----------------------NCAASMAFEDKEIHDQNCP 160 (170)
T ss_dssp SEEECT--TTCCEEEGGGHHHHHHHTCTTCEEECT----------------------TTCCEEEGGGHHHHHTTCC
T ss_pred eeeECC--CCChHHHHHHHHHHhhhhCCCCCeECC----------------------CCCCccCHHHHHhHHHhCc
Confidence 456774 999999999999999 79999999996 8999999999999987654
No 92
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.12 E-value=0.011 Score=43.92 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=41.5
Q ss_pred cccCCCCCCCceeeccccccccccccccccCCCcccccCCCCCCCCCCCCCCccCCCCccccccchhhhhhhc
Q psy7814 81 NLTCPYKQCSSQLSIPEYESHVNTCYLKYSQPSVEDITDSPTSSFRNTSGIPTNKRNSKILTVTVFPEHLNMQ 153 (460)
Q Consensus 81 ~v~C~n~gC~~~~~l~~l~~H~~~C~~~~~~C~~~~~~~h~~c~~~~~~~~~~~~~c~~~~~r~~l~~H~~~~ 153 (460)
++.| ..|.......+|+.|...|+..++.|+ .|++.+.|.+|..|++.+
T Consensus 17 ~~~C--~~C~~~~~~~~L~~H~~~c~~~~~~C~----------------------~C~~~~~~~~l~~H~~~c 65 (75)
T 2d9k_A 17 LAVC--QHCDLELSILKLKEHEDYCGARTELCG----------------------NCGRNVLVKDLKTHPEVC 65 (75)
T ss_dssp CEEC--SSSCCEECHHHHHHHHHHHHHCEEECS----------------------SSCCEEETTGGGTHHHHB
T ss_pred ccCC--cccChHhhHHHHHHHHhHcCCCceEcc----------------------cCCCcCcHHHHHHHHHHc
Confidence 4556 469999999999999999999999996 688889999999998653
No 93
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=93.91 E-value=0.038 Score=50.78 Aligned_cols=49 Identities=18% Similarity=0.475 Sum_probs=40.5
Q ss_pred cccccccccccccceec-CCCCcccHhhHHHHHhcCCCCCCCCCcccccc
Q psy7814 16 RFECSICLEYLKDAILT-SCGHKFCAACIDSWIDVKGKNYCPIDEKVLTK 64 (460)
Q Consensus 16 ~l~C~iC~~~l~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (460)
...|.+|..++..-..+ .|++.|-..|+.+|++..+...||.|+.+...
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 56799999999877765 59999999999999977554469999987653
No 94
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.75 E-value=0.03 Score=44.02 Aligned_cols=33 Identities=21% Similarity=0.642 Sum_probs=27.9
Q ss_pred Cccccccccc-cccccee--cCCCCcccHhhHHHHH
Q psy7814 15 PRFECSICLE-YLKDAIL--TSCGHKFCAACIDSWI 47 (460)
Q Consensus 15 ~~l~C~iC~~-~l~~p~~--~~CgH~fC~~Ci~~~~ 47 (460)
+++.|++|.. ++.+|+. +.|+|.||..|+..+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 4678999996 4788887 7999999999999843
No 95
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=93.46 E-value=0.083 Score=38.77 Aligned_cols=68 Identities=29% Similarity=0.575 Sum_probs=44.8
Q ss_pred CCCCcccccccccccccceecCC----CCcccHhhHHHHHhcCCC---CCCCC-CcccccccccccchHHHHHHHhc
Q psy7814 12 NLDPRFECSICLEYLKDAILTSC----GHKFCAACIDSWIDVKGK---NYCPI-DEKVLTKDDIFIDNYTRREILEN 80 (460)
Q Consensus 12 ~~~~~l~C~iC~~~l~~p~~~~C----gH~fC~~Ci~~~~~~~~~---~~CP~-Cr~~~~~~~~~~~~~~~~~i~~l 80 (460)
.....+.|.+|.+-|.+....+| +|.||..|-...++.++. ..||. .+.++.-+. .|=.+++.+|..+
T Consensus 11 ~~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG~kCpL~gS~-~PWAFmqgEIatI 86 (93)
T 2cs3_A 11 ANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKCPLVGSN-VPWAFMQGEIATI 86 (93)
T ss_dssp CSCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSCCBCSSSS-SBCCCCHHHHHHH
T ss_pred CCCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCCCccccCCCc-CchHHHhhHHHHH
Confidence 34567899999999998764444 799999999988876322 24774 334444332 3445566666543
No 96
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=90.53 E-value=0.44 Score=46.22 Aligned_cols=67 Identities=13% Similarity=0.198 Sum_probs=51.6
Q ss_pred CCccccccccccccccee-cCCCCcccHhh--HHHHHhcCCCCCCCCCcccccccccccchHHHHHHHhc
Q psy7814 14 DPRFECSICLEYLKDAIL-TSCGHKFCAAC--IDSWIDVKGKNYCPIDEKVLTKDDIFIDNYTRREILEN 80 (460)
Q Consensus 14 ~~~l~C~iC~~~l~~p~~-~~CgH~fC~~C--i~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 80 (460)
.-.|.||+=...+..|+. ..|.|.-|.+- +.......+.-.||+|...+...++..|.++.+.+...
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQNC 316 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTTS
T ss_pred EEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHhc
Confidence 446899999999999998 69999977544 33333334444699999999999999999988777654
No 97
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.92 E-value=0.2 Score=35.41 Aligned_cols=44 Identities=14% Similarity=0.094 Sum_probs=33.7
Q ss_pred CCCccccccchhhhhhhcCCCCCccccc-cccccccccccchhHHHHHhhh
Q psy7814 136 RNSKILTVTVFPEHLNMQGSSNENFPCK-FYQVGCREVFKSQALLEKHYDL 185 (460)
Q Consensus 136 ~c~~~~~r~~l~~H~~~~c~~~~~v~Cp-~~~~GC~~~~~r~~~l~~H~~~ 185 (460)
.|++...+..|..|+.. +. ..+..|+ . |...+.+...|..|+..
T Consensus 15 ~C~k~f~~~~L~~H~~~-~~-~~p~~C~~~----C~k~f~~~~~L~~H~~~ 59 (66)
T 2eod_A 15 YCTKEFVFDTIQSHQYQ-CP-RLPVACPNQ----CGVGTVAREDLPGHLKD 59 (66)
T ss_dssp SSCCEEEHHHHHHHHHH-CS-SSEEECTTC----CSCCEEETTTHHHHHHT
T ss_pred ccCCccCHHHHHHHHHH-cC-CcCccCCcc----cCcccccHHHHHHHHHh
Confidence 68776668889999987 54 6688998 5 98876655448888765
No 98
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=88.19 E-value=0.27 Score=37.41 Aligned_cols=51 Identities=22% Similarity=0.402 Sum_probs=39.8
Q ss_pred CCCCCcccccccccccccceecCCCCcccHhhHHHHHhcCCCCCCCCCcccccc
Q psy7814 11 LNLDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTK 64 (460)
Q Consensus 11 ~~~~~~l~C~iC~~~l~~p~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (460)
..+-..+.|-.|....+. .+....|-+|..|+...+..+.. ||+|..++..
T Consensus 23 ~s~~G~~nCKsCWf~~k~-LV~C~dHYLCl~CLtlmL~~Sdr--CpIC~~pLPt 73 (99)
T 2ko5_A 23 ATHLGPQFCKSCWFENKG-LVECNNHYLCLNCLTLLLSVSNR--CPICKMPLPT 73 (99)
T ss_dssp CCCSCCCCCCSSCSCCSS-EEECSSCEEEHHHHHHTCSSSSE--ETTTTEECCC
T ss_pred ccccCcccChhhccccCC-eeeecchhhHHHHHHHHHhhccC--CcccCCcCCc
Confidence 355567889999887763 33456799999999998887764 9999988775
No 99
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=87.57 E-value=0.66 Score=44.81 Aligned_cols=68 Identities=16% Similarity=0.252 Sum_probs=51.2
Q ss_pred CCCCccccccccccccccee-cCCCCcccHhh--HHHHHhcCCCCCCCCCcccccccccccchHHHHHHHh
Q psy7814 12 NLDPRFECSICLEYLKDAIL-TSCGHKFCAAC--IDSWIDVKGKNYCPIDEKVLTKDDIFIDNYTRREILE 79 (460)
Q Consensus 12 ~~~~~l~C~iC~~~l~~p~~-~~CgH~fC~~C--i~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~ 79 (460)
.+.-.|.||+=...+..|+. ..|.|.-|.+- +.......+.-.||+|...+...++..|.++.+.+..
T Consensus 211 ~~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 211 SLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp CEEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred eeEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 34456889999999999998 69999966543 2333333444469999999998899999988877654
No 100
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=83.73 E-value=1.4 Score=33.07 Aligned_cols=48 Identities=21% Similarity=0.474 Sum_probs=36.1
Q ss_pred cccccccccccc-----cceec--CCCCcccHhhHHHHHhcCCCCCCCCCcccccc
Q psy7814 16 RFECSICLEYLK-----DAILT--SCGHKFCAACIDSWIDVKGKNYCPIDEKVLTK 64 (460)
Q Consensus 16 ~l~C~iC~~~l~-----~p~~~--~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (460)
.-+|.||.+-+- ++..+ .|+--.|+.|++--...... .||.|++++..
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q-~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQ-NCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCS-SCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCc-cccccCCcccc
Confidence 357999999752 24442 78999999999976665554 69999998864
No 101
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=76.72 E-value=2.4 Score=36.52 Aligned_cols=45 Identities=16% Similarity=0.296 Sum_probs=30.9
Q ss_pred CCCccc-cccchhhhhhhcCCCCCccccccccccccccccchhHHHHHhhh
Q psy7814 136 RNSKIL-TVTVFPEHLNMQGSSNENFPCKFYQVGCREVFKSQALLEKHYDL 185 (460)
Q Consensus 136 ~c~~~~-~r~~l~~H~~~~c~~~~~v~Cp~~~~GC~~~~~r~~~l~~H~~~ 185 (460)
.|+... .+..|..|+..-.. ..+..|++ |...+.....|..|+..
T Consensus 138 ~C~~~f~~~~~L~~H~~~H~~-~~~~~C~~----C~~~f~~~~~L~~H~~~ 183 (190)
T 2i13_A 138 ECGKSFSREDNLHTHQRTHTG-EKPYKCPE----CGKSFSRRDALNVHQRT 183 (190)
T ss_dssp TTCCEESCHHHHHHHHHHHHC-CCCEECTT----TCCEESSHHHHHHHHTT
T ss_pred CCCcccCCHHHHHHHHHhcCC-CCCeECCC----CCCccCCHHHHHHHHHh
Confidence 455543 45678888765432 44678887 98888877768888765
No 102
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=70.87 E-value=2.5 Score=34.00 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=35.7
Q ss_pred ccccccccccccc---ceecCCCCcccHhhHHHHHhcCCCCCCCCCcccccccc
Q psy7814 16 RFECSICLEYLKD---AILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDD 66 (460)
Q Consensus 16 ~l~C~iC~~~l~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (460)
-|.|..|...|.+ .....-|..||..|+.+.+..++ .|..|..++....
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~--~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSG--AGGSGGHMGSGGD 83 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCC--SSSCSSCCSCCEE
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCC--ccccCCCCcCchh
Confidence 3788899988863 33457788999999988765433 3999988887543
No 103
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=69.76 E-value=25 Score=33.77 Aligned_cols=36 Identities=17% Similarity=0.319 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7814 263 SHLLKLVYERMVLLEQSMLEQKIKVNNFELNLKQTE 298 (460)
Q Consensus 263 ~~~~~~l~~~i~~l~~~~~~l~~~~~~l~~~l~~l~ 298 (460)
.+...+|..+|..|...+......|..|+..|.++.
T Consensus 112 ~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~ 147 (390)
T 1deq_A 112 KQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQL 147 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344566777777776666655555555554444433
No 104
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=65.26 E-value=7.5 Score=33.26 Aligned_cols=41 Identities=17% Similarity=0.339 Sum_probs=21.4
Q ss_pred cccchhhhhhhcCCCCCccccccccccccccccchhHHHHHhhh
Q psy7814 142 TVTVFPEHLNMQGSSNENFPCKFYQVGCREVFKSQALLEKHYDL 185 (460)
Q Consensus 142 ~r~~l~~H~~~~c~~~~~v~Cp~~~~GC~~~~~r~~~l~~H~~~ 185 (460)
.+..|..|+..--. ..+..|++ .+|...+.....|..|+..
T Consensus 118 ~~~~L~~H~~~H~~-~~~~~C~~--~~C~k~F~~~~~L~~H~~~ 158 (190)
T 1tf6_A 118 KHNQLKVHQFSHTQ-QLPYECPH--EGCDKRFSLPSRLKRHEKV 158 (190)
T ss_dssp SHHHHHHHHGGGSS-SCSSBCCS--SSCCCBCSSHHHHHHHHTS
T ss_pred CHHHHHHHHHHhCC-CCCccCCC--CCCCchhcCHHHHHHHHHH
Confidence 34456666554321 23455654 3566666655556666543
No 105
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=65.04 E-value=4.9 Score=31.48 Aligned_cols=45 Identities=13% Similarity=0.191 Sum_probs=31.2
Q ss_pred CCCcc-ccccchhhhhhhcCCCCCccccccccccccccccchhHHHHHhhh
Q psy7814 136 RNSKI-LTVTVFPEHLNMQGSSNENFPCKFYQVGCREVFKSQALLEKHYDL 185 (460)
Q Consensus 136 ~c~~~-~~r~~l~~H~~~~c~~~~~v~Cp~~~~GC~~~~~r~~~l~~H~~~ 185 (460)
.|+.. ..+..|..|+..--. ..+..|+. |...+.+...|..|+..
T Consensus 71 ~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~----C~~~f~~~~~l~~H~~~ 116 (124)
T 2dlq_A 71 VCQETFRRRMELRLHMVSHTG-EMPYKCSS----CSQQFMQKKDLQSHMIK 116 (124)
T ss_dssp SSCCEESSHHHHHHHHHHHSS-SCSEECSS----SCCEESSHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHcCC-CCCccCCC----ccchhCCHHHHHHHHHH
Confidence 45543 346678888865432 45688987 99998887768888754
No 106
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=63.94 E-value=19 Score=22.81 Aligned_cols=24 Identities=17% Similarity=0.147 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy7814 267 KLVYERMVLLEQSMLEQKIKVNNF 290 (460)
Q Consensus 267 ~~l~~~i~~l~~~~~~l~~~~~~l 290 (460)
.+|+.+...|+..+.+|+.++..+
T Consensus 6 ~eLE~r~k~le~~naeLEervstL 29 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTL 29 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 107
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=61.71 E-value=30 Score=24.12 Aligned_cols=36 Identities=8% Similarity=0.073 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7814 266 LKLVYERMVLLEQSMLEQKIKVNNFELNLKQTEEIE 301 (460)
Q Consensus 266 ~~~l~~~i~~l~~~~~~l~~~~~~l~~~l~~l~~~~ 301 (460)
...+..++..|+.++.+|...+..|+..+..|..++
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777777777777777777666666544
No 108
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=59.90 E-value=7.7 Score=38.86 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7814 268 LVYERMVLLEQSMLEQKIKVNNFELNLKQTEEIE 301 (460)
Q Consensus 268 ~l~~~i~~l~~~~~~l~~~~~~l~~~l~~l~~~~ 301 (460)
+|..+|..|+.++......|..|+..|.++...+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kI 147 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDM 147 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666665555555555555444443333
No 109
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=58.51 E-value=32 Score=21.79 Aligned_cols=32 Identities=13% Similarity=0.204 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7814 268 LVYERMVLLEQSMLEQKIKVNNFELNLKQTEE 299 (460)
Q Consensus 268 ~l~~~i~~l~~~~~~l~~~~~~l~~~l~~l~~ 299 (460)
+|..+|.++..++..-+.+|+.++.++.+|+.
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777777777777653
No 110
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=56.48 E-value=11 Score=29.57 Aligned_cols=46 Identities=20% Similarity=0.383 Sum_probs=22.9
Q ss_pred CCccc-cccchhhhhhhcCCCCCccccccccccccccccchhHHHHHhhh
Q psy7814 137 NSKIL-TVTVFPEHLNMQGSSNENFPCKFYQVGCREVFKSQALLEKHYDL 185 (460)
Q Consensus 137 c~~~~-~r~~l~~H~~~~c~~~~~v~Cp~~~~GC~~~~~r~~~l~~H~~~ 185 (460)
|+... ....|..|+..--. .....||+ .+|...+.+...|..|+..
T Consensus 70 C~~~f~~~~~l~~H~~~h~~-~~~~~C~~--~~C~~~f~~~~~L~~H~~~ 116 (124)
T 1ubd_C 70 CGKRFSLDFNLRTHVRIHTG-DRPYVCPF--DGCNKKFAQSTNLKSHILT 116 (124)
T ss_dssp CCCEESCHHHHHHHHHHHHC-CCCCCCCS--TTCCCCCSSTTTTHHHHHH
T ss_pred CcCccCCHHHHHHHHHHhCC-CCceECCC--CCCCCccCCHHHHHHHHHH
Confidence 44432 34455666543221 23456654 3566666555546666543
No 111
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=55.85 E-value=9.6 Score=29.45 Aligned_cols=47 Identities=15% Similarity=0.386 Sum_probs=30.1
Q ss_pred CCCcc-ccccchhhhhhhcCCCCCccccccccccccccccchhHHHHHhhh
Q psy7814 136 RNSKI-LTVTVFPEHLNMQGSSNENFPCKFYQVGCREVFKSQALLEKHYDL 185 (460)
Q Consensus 136 ~c~~~-~~r~~l~~H~~~~c~~~~~v~Cp~~~~GC~~~~~r~~~l~~H~~~ 185 (460)
.|+.. ..+..|..|+..-.. .....|++ ..|...+.....|..|+..
T Consensus 71 ~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~--~~C~~~f~~~~~L~~H~~~ 118 (119)
T 2jp9_A 71 TCQRKFSRSDHLKTHTRTHTG-EKPFSCRW--PSCQKKFARSDELVRHHNM 118 (119)
T ss_dssp TTCCEESCHHHHHHHHHHHHT-CCCEECCS--TTCCCEESSHHHHHHHHHT
T ss_pred ccCchhCCHHHHHHHHHHhcC-CCCeeCCC--CCCccccCCHHHHHHHHhc
Confidence 45544 345677888765322 34678832 2499998887768888753
No 112
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=54.83 E-value=45 Score=22.92 Aligned_cols=35 Identities=9% Similarity=0.007 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7814 265 LLKLVYERMVLLEQSMLEQKIKVNNFELNLKQTEE 299 (460)
Q Consensus 265 ~~~~l~~~i~~l~~~~~~l~~~~~~l~~~l~~l~~ 299 (460)
.+..+..++..|+.++.+|...+..|...+..|..
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777778888888888777777777766654
No 113
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=54.66 E-value=57 Score=26.29 Aligned_cols=46 Identities=24% Similarity=0.462 Sum_probs=27.7
Q ss_pred CCccc-cccchhhhhhhcCCCCCccccccccccccccccchhHHHHHhhh
Q psy7814 137 NSKIL-TVTVFPEHLNMQGSSNENFPCKFYQVGCREVFKSQALLEKHYDL 185 (460)
Q Consensus 137 c~~~~-~r~~l~~H~~~~c~~~~~v~Cp~~~~GC~~~~~r~~~l~~H~~~ 185 (460)
|+... .+..|..|+..--. .....|++ .+|...+.+...|..|+..
T Consensus 98 C~~~f~~~~~L~~H~~~h~~-~~~~~C~~--~~C~k~f~~~~~L~~H~~~ 144 (155)
T 2rpc_A 98 CGKIFARSENLKIHKRTHTG-EKPFKCEF--EGCDRRFANSSDRKKHMHV 144 (155)
T ss_dssp TCCEESCHHHHHHHHTTTCS-SCSBCCSS--TTCCCCBSSHHHHHHSSTT
T ss_pred CCCccCCHHHHHHHHHhhCC-CCCccCCC--CCCCCccCCHHHHHHHHHH
Confidence 44432 45566777654322 33567775 3688887777667777654
No 114
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=53.80 E-value=4.5 Score=31.98 Aligned_cols=26 Identities=15% Similarity=0.255 Sum_probs=22.7
Q ss_pred CccccccccccccccccchhHHHHHhhhc
Q psy7814 158 ENFPCKFYQVGCREVFKSQALLEKHYDLK 186 (460)
Q Consensus 158 ~~v~Cp~~~~GC~~~~~r~~~l~~H~~~~ 186 (460)
..+.||+. ||.+.+...+ +..|++++
T Consensus 87 l~v~C~~~--gC~~~~~~~~-~~~H~~~C 112 (116)
T 1rmd_A 87 LMVKCPAQ--DCNEEVSLEK-YNHHVSSH 112 (116)
T ss_dssp CEEECCST--TCCCEEEHHH-HHHHHHTS
T ss_pred hcCCCCCC--CCcchhhHhH-HHHHHHHh
Confidence 46899985 9999999999 99999775
No 115
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=52.94 E-value=14 Score=27.38 Aligned_cols=31 Identities=19% Similarity=0.439 Sum_probs=22.4
Q ss_pred Cccccccccccccc---ceec-CCCCcccHhhHHH
Q psy7814 15 PRFECSICLEYLKD---AILT-SCGHKFCAACIDS 45 (460)
Q Consensus 15 ~~l~C~iC~~~l~~---p~~~-~CgH~fC~~Ci~~ 45 (460)
+.-.|.+|...|.- .... .||..||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 34579999987642 3343 8999999999553
No 116
>2vy4_A U11/U12 small nuclear ribonucleoprotein 48 kDa protein; splicing, mRNA processing, alternative splicing, transcription, nucleus, spliceosome; NMR {Homo sapiens} SCOP: g.37.1.7 PDB: 2vy5_A
Probab=52.85 E-value=12 Score=23.24 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=22.3
Q ss_pred CCccccccccccccccccchhHHHHHhhhchHHH
Q psy7814 157 NENFPCKFYQVGCREVFKSQALLEKHYDLKTSFH 190 (460)
Q Consensus 157 ~~~v~Cp~~~~GC~~~~~r~~~l~~H~~~~~~~H 190 (460)
...+.||| -.+.++.+.. |..|+..+...+
T Consensus 3 ~~~v~CPy---d~~H~i~~~~-l~~Hl~kC~~r~ 32 (37)
T 2vy4_A 3 DEVVICPY---DSNHHMPKSS-LAKHMASCRLRK 32 (37)
T ss_dssp CCCEECTT---TSSCEECGGG-HHHHHHHHHHHH
T ss_pred ceEEECCC---CCCeEeCHHH-HHHHHHHHhhhh
Confidence 35688997 4777888888 999988765443
No 117
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=52.65 E-value=2.9 Score=36.75 Aligned_cols=48 Identities=15% Similarity=0.107 Sum_probs=20.2
Q ss_pred CCCCccccccchhhhhhhcCCCCCccccccccccccccccchhHHHHHhhh
Q psy7814 135 KRNSKILTVTVFPEHLNMQGSSNENFPCKFYQVGCREVFKSQALLEKHYDL 185 (460)
Q Consensus 135 ~~c~~~~~r~~l~~H~~~~c~~~~~v~Cp~~~~GC~~~~~r~~~l~~H~~~ 185 (460)
.+|...++-.+...|.+.| ...+-.||+....|+|.|...+ |..|+..
T Consensus 14 ~GC~~~~~y~~~~~He~~C--~f~p~~Cp~~g~~C~~~G~~~~-l~~H~~~ 61 (193)
T 2a25_A 14 SGCEITLPHTEKADHEELC--EFRPYSCPCPGASCKWQGSLDA-VMPHLMH 61 (193)
T ss_dssp ------------------------CEECCCC--CCCCEECSTT-HHHHHHH
T ss_pred CCCCcccccccccchhhcC--CCCCccCCCCCCCCcCCCCHHH-HHHHHHH
Confidence 4788888888888998765 8888899986455999999988 8888754
No 118
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=51.17 E-value=49 Score=24.79 Aligned_cols=39 Identities=10% Similarity=0.066 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy7814 267 KLVYERMVLLEQSMLEQKIKVNNFELNLKQTEEIEDNVV 305 (460)
Q Consensus 267 ~~l~~~i~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~ 305 (460)
..+..++..|++++..|...+..|+..+..|..++..+.
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p 77 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 456778889999999999999999988888876655543
No 119
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=50.17 E-value=5.8 Score=34.49 Aligned_cols=48 Identities=21% Similarity=0.352 Sum_probs=34.9
Q ss_pred Cccccccccccccc---ceecCCCCcccHhhHHHHHhcCCCCCCCCCcccccc
Q psy7814 15 PRFECSICLEYLKD---AILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTK 64 (460)
Q Consensus 15 ~~l~C~iC~~~l~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (460)
+-|.|..|...|.. +....=|..||..|+.+.+.... .|+.|+.++..
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~--~C~~C~~~I~~ 81 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSG--ACSACGQSIPA 81 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCE--ECTTTCCEECT
T ss_pred cCcccCCCCcccccCCceEEEeCCccccccccccccccCC--ccccCCCcccc
Confidence 34788889888875 44557788999999888764321 39999887764
No 120
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=49.82 E-value=21 Score=28.95 Aligned_cols=83 Identities=18% Similarity=0.348 Sum_probs=49.8
Q ss_pred ccccCCCCCCCceeec-ccccccccccc-ccccCCCcccccCCCCCCCCCCCCCCccCCCCcc-ccccchhhhh-hhcCC
Q psy7814 80 NNLTCPYKQCSSQLSI-PEYESHVNTCY-LKYSQPSVEDITDSPTSSFRNTSGIPTNKRNSKI-LTVTVFPEHL-NMQGS 155 (460)
Q Consensus 80 l~v~C~n~gC~~~~~l-~~l~~H~~~C~-~~~~~C~~~~~~~h~~c~~~~~~~~~~~~~c~~~-~~r~~l~~H~-~~~c~ 155 (460)
....|+..+|+..... ..|..|+.... -.+..|+ ...|+.. ..+..|..|+ ..--
T Consensus 66 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--------------------~~~C~~~f~~~~~L~~H~~~~H~- 124 (155)
T 2gli_A 66 KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCE--------------------HEGCSKAFSNASDRAKHQNRTHS- 124 (155)
T ss_dssp CCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECC--------------------STTCCCEESSSSTTHHHHHHTTC-
T ss_pred CCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCC--------------------CCCCCCccCCHHHHHHHHHHhcC-
Confidence 4567764468765543 34666764322 1222342 0126654 3577888998 3322
Q ss_pred CCCccccccccccccccccchhHHHHHhhh
Q psy7814 156 SNENFPCKFYQVGCREVFKSQALLEKHYDL 185 (460)
Q Consensus 156 ~~~~v~Cp~~~~GC~~~~~r~~~l~~H~~~ 185 (460)
......|++ .||...+.+...|..|+..
T Consensus 125 ~~~~~~C~~--~~C~~~f~~~~~L~~H~~~ 152 (155)
T 2gli_A 125 NEKPYVCKL--PGCTKRYTDPSSLRKHVKT 152 (155)
T ss_dssp SCCCEECCS--TTTCCEESSHHHHHHHHHH
T ss_pred CCCCeeCCC--CCCccccCCHHHHHHHHHh
Confidence 244678875 5799998888778888764
No 121
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=49.62 E-value=0.93 Score=34.67 Aligned_cols=41 Identities=27% Similarity=0.523 Sum_probs=27.1
Q ss_pred ccccccccccccceecCCCCcccHhhHHHHHhcCCCCCCCCCcccccc
Q psy7814 17 FECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTK 64 (460)
Q Consensus 17 l~C~iC~~~l~~p~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (460)
..||+|...+.- .=|+.+|..|-..+.. .. .||.|+.++..
T Consensus 33 ~~CP~Cq~eL~~----~g~~~hC~~C~~~f~~-~a--~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLDQ----DNGHARCRSCGEFIEM-KA--LCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEEE----ETTEEEETTTCCEEEE-EE--ECTTTCSBCEE
T ss_pred ccCccCCCccee----cCCEEECccccchhhc-cc--cCcchhhHHHH
Confidence 789999988752 1244458888554322 22 49999998874
No 122
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=49.44 E-value=51 Score=23.68 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy7814 277 EQSMLEQKIKVNNFELNLKQTEE 299 (460)
Q Consensus 277 ~~~~~~l~~~~~~l~~~l~~l~~ 299 (460)
..++++.+..|..++..|.+.+.
T Consensus 32 ~eELr~kd~~I~eLEk~L~ekd~ 54 (72)
T 3nmd_A 32 IEELRQRDALIDELELELDQKDE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 123
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=48.93 E-value=28 Score=34.22 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=19.7
Q ss_pred CCccccccccccccccccchhHHHHHhhhchHHHHHHHHHHhhc
Q psy7814 157 NENFPCKFYQVGCREVFKSQALLEKHYDLKTSFHLELLFNKYCS 200 (460)
Q Consensus 157 ~~~v~Cp~~~~GC~~~~~r~~~l~~H~~~~~~~Hl~ll~~~~~~ 200 (460)
.--+.|| -||..++. -.+.+..+...+.-|.+.+..
T Consensus 41 DwGvkCP---SGCrLqgl-----L~kqerdv~~rI~kLkn~L~~ 76 (491)
T 1m1j_A 41 DWGTKCP---SGCRMQGI-----IDDTDQNYSQRIDNIRQQLAD 76 (491)
T ss_dssp STTTEEC---CSTTHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCC---CccchhhH-----HHHhhhhHHHHHHHHHHHHHH
Confidence 4468888 69987653 333333444445555444433
No 124
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=48.76 E-value=9 Score=30.87 Aligned_cols=48 Identities=19% Similarity=0.379 Sum_probs=35.4
Q ss_pred Cccccccccccccc---ceecCCCCcccHhhHHHHHhcCCCCCCCCCcccccc
Q psy7814 15 PRFECSICLEYLKD---AILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTK 64 (460)
Q Consensus 15 ~~l~C~iC~~~l~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (460)
+-|.|..|...|.. +....=|..||..|+.+...... .|..|+.++..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~--~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDG--LCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCE--ECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCcc--ChhhcCCccCc
Confidence 45889999988853 44557789999999988764322 39999887764
No 125
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=48.60 E-value=8.8 Score=30.83 Aligned_cols=49 Identities=14% Similarity=0.329 Sum_probs=26.2
Q ss_pred CCCCCCccccccccccccc---cee-cCCCCcccHhhHHHHHhcCCCCCCCCCcc
Q psy7814 10 KLNLDPRFECSICLEYLKD---AIL-TSCGHKFCAACIDSWIDVKGKNYCPIDEK 60 (460)
Q Consensus 10 ~~~~~~~l~C~iC~~~l~~---p~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~ 60 (460)
+.+..+.-.|..|...|.- -.. -.||..||..|....... . ..|-.|-.
T Consensus 13 ~~Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~-v-RVC~~C~~ 65 (120)
T 1y02_A 13 PSPTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG-P-RLCLLCQR 65 (120)
T ss_dssp -------CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----C-CEEHHHHH
T ss_pred CcCccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC-c-eECHHHHH
Confidence 3344455679999987643 234 389999999996654321 1 13666643
No 126
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=48.18 E-value=17 Score=27.16 Aligned_cols=51 Identities=20% Similarity=0.380 Sum_probs=32.1
Q ss_pred Ccccccccccccc--cceecCCCCcccHhhHHHHHhcCCCCCCCCCcccccccccccc
Q psy7814 15 PRFECSICLEYLK--DAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFID 70 (460)
Q Consensus 15 ~~l~C~iC~~~l~--~p~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (460)
..-.|..|..-+- .|..+.||..||..= ++... ..|+.+-.......+...
T Consensus 24 ~~~rC~~C~kkvgl~~~f~CrCg~~FC~~H--Ry~e~---H~C~fDyK~~gr~~iak~ 76 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFECRCGNNFCASH--RYAEA---HGCNYDYKSAGRRYLEEA 76 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEECTTCCEECTTT--CSTGG---GTCCSCCSSSCCCCCCCC
T ss_pred cCccchhhCCeecccCCeEcCCCCEecccC--CCccC---CCCcchhhHHHHHHHHHH
Confidence 3467999998443 488889999999732 22111 239887555544444433
No 127
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=47.71 E-value=8.6 Score=30.78 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=34.5
Q ss_pred Cccccccccccccc-ceecCCCCcccHhhHHHHHhcCCCCCCCCCcccccc
Q psy7814 15 PRFECSICLEYLKD-AILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTK 64 (460)
Q Consensus 15 ~~l~C~iC~~~l~~-p~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (460)
+-|.|..|...|.. +....-|..||..|..+... + .|+.|+.++..
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~---~-~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHA---V-VCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSC---C-BCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcC---c-cCcccCCcCCc
Confidence 34889999998875 33457789999999877532 2 49999988874
No 128
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=47.67 E-value=58 Score=25.40 Aligned_cols=44 Identities=7% Similarity=0.074 Sum_probs=37.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy7814 261 DNSHLLKLVYERMVLLEQSMLEQKIKVNNFELNLKQTEEIEDNV 304 (460)
Q Consensus 261 ~~~~~~~~l~~~i~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~ 304 (460)
.++++.+++-++|..|+.+.-+++..+...+-.|++|...++++
T Consensus 46 ~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 46 KLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 35677889999999999999999999999988999988777666
No 129
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=46.96 E-value=29 Score=21.07 Aligned_cols=27 Identities=11% Similarity=0.073 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7814 268 LVYERMVLLEQSMLEQKIKVNNFELNL 294 (460)
Q Consensus 268 ~l~~~i~~l~~~~~~l~~~~~~l~~~l 294 (460)
.|..++..|..+...|+..+..|+.-+
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 344444444444444444444444433
No 130
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=46.78 E-value=59 Score=25.30 Aligned_cols=43 Identities=9% Similarity=0.093 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy7814 262 NSHLLKLVYERMVLLEQSMLEQKIKVNNFELNLKQTEEIEDNV 304 (460)
Q Consensus 262 ~~~~~~~l~~~i~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~ 304 (460)
++++.+++-++|..|+.+.-+++..+...+-.|++|...++++
T Consensus 47 L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 47 LREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 4566788899999999999999999998888888888766665
No 131
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=46.29 E-value=53 Score=20.69 Aligned_cols=31 Identities=13% Similarity=0.227 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7814 269 VYERMVLLEQSMLEQKIKVNNFELNLKQTEE 299 (460)
Q Consensus 269 l~~~i~~l~~~~~~l~~~~~~l~~~l~~l~~ 299 (460)
+..+|++|.....+++..-.++++-+..+.-
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrd 38 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRD 38 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHH
Confidence 3445556655555555555555544444433
No 132
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.02 E-value=8.5 Score=26.46 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=26.9
Q ss_pred CCCceeeccccccccccccccccCCCcccccCCCCCCCCCCCCCCccCCCCcc-ccccchhhhhhhcCC
Q psy7814 88 QCSSQLSIPEYESHVNTCYLKYSQPSVEDITDSPTSSFRNTSGIPTNKRNSKI-LTVTVFPEHLNMQGS 155 (460)
Q Consensus 88 gC~~~~~l~~l~~H~~~C~~~~~~C~~~~~~~h~~c~~~~~~~~~~~~~c~~~-~~r~~l~~H~~~~c~ 155 (460)
-|+.......|..|...+.-.+..|+ ..|++. ..+..|..|+..-|+
T Consensus 15 ~C~k~f~~~~L~~H~~~~~~~p~~C~---------------------~~C~k~f~~~~~L~~H~~~hc~ 62 (66)
T 2eod_A 15 YCTKEFVFDTIQSHQYQCPRLPVACP---------------------NQCGVGTVAREDLPGHLKDSCN 62 (66)
T ss_dssp SSCCEEEHHHHHHHHHHCSSSEEECT---------------------TCCSCCEEETTTHHHHHHTTSS
T ss_pred ccCCccCHHHHHHHHHHcCCcCccCC---------------------cccCcccccHHHHHHHHHhhcc
Confidence 35544444556666644544555551 156654 566788888776554
No 133
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=45.80 E-value=42 Score=19.33 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy7814 275 LLEQSMLEQKIKVNNFELNLKQTE 298 (460)
Q Consensus 275 ~l~~~~~~l~~~~~~l~~~l~~l~ 298 (460)
+|+.+++.|...+..|++++..++
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle 26 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLE 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555665555555555555544
No 134
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=45.02 E-value=38 Score=21.73 Aligned_cols=12 Identities=25% Similarity=0.122 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q psy7814 268 LVYERMVLLEQS 279 (460)
Q Consensus 268 ~l~~~i~~l~~~ 279 (460)
++.++...|+.+
T Consensus 13 el~~r~e~LE~R 24 (43)
T 2pnv_A 13 DLNERSEDFEKR 24 (43)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHhhHHHHHH
Confidence 333333333333
No 135
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=44.98 E-value=65 Score=25.31 Aligned_cols=35 Identities=6% Similarity=0.103 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7814 264 HLLKLVYERMVLLEQSMLEQKIKVNNFELNLKQTE 298 (460)
Q Consensus 264 ~~~~~l~~~i~~l~~~~~~l~~~~~~l~~~l~~l~ 298 (460)
..++++...|..|++++.+....++.|......+.
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 34566666666776666666666666655444433
No 136
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=44.85 E-value=59 Score=20.80 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7814 268 LVYERMVLLEQSMLEQKIKVNNFELNLKQTEE 299 (460)
Q Consensus 268 ~l~~~i~~l~~~~~~l~~~~~~l~~~l~~l~~ 299 (460)
.++.-+++|+.....++..+.++++.+..+++
T Consensus 21 klenivarlendnanlekdianlekdianler 52 (56)
T 3he4_A 21 KLENIVARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 35555678888888888888888888777764
No 137
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=44.69 E-value=75 Score=21.98 Aligned_cols=34 Identities=12% Similarity=0.028 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7814 266 LKLVYERMVLLEQSMLEQKIKVNNFELNLKQTEE 299 (460)
Q Consensus 266 ~~~l~~~i~~l~~~~~~l~~~~~~l~~~l~~l~~ 299 (460)
+..|..++..|+.++..|...+..|...+..+..
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777776666665554
No 138
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=43.60 E-value=12 Score=27.86 Aligned_cols=29 Identities=24% Similarity=0.624 Sum_probs=21.6
Q ss_pred cccccccccc-----cceec-CCCCcccHhhHHHH
Q psy7814 18 ECSICLEYLK-----DAILT-SCGHKFCAACIDSW 46 (460)
Q Consensus 18 ~C~iC~~~l~-----~p~~~-~CgH~fC~~Ci~~~ 46 (460)
.||-|..++. .++++ .||+.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 4999988663 23455 49999999997766
No 139
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=42.61 E-value=18 Score=26.07 Aligned_cols=29 Identities=28% Similarity=0.505 Sum_probs=21.4
Q ss_pred ccccccccccccc---ceec-CCCCcccHhhHH
Q psy7814 16 RFECSICLEYLKD---AILT-SCGHKFCAACID 44 (460)
Q Consensus 16 ~l~C~iC~~~l~~---p~~~-~CgH~fC~~Ci~ 44 (460)
+-.|.+|...|.- .... .||..||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 3479999987643 2343 899999999954
No 140
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=42.46 E-value=52 Score=19.69 Aligned_cols=17 Identities=0% Similarity=0.130 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy7814 269 VYERMVLLEQSMLEQKI 285 (460)
Q Consensus 269 l~~~i~~l~~~~~~l~~ 285 (460)
+++++..|-.+...|+.
T Consensus 6 LEdKVEeLl~~~~~Le~ 22 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXEN 22 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHH
Confidence 33344333333333333
No 141
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=42.21 E-value=3.9 Score=24.96 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=11.3
Q ss_pred ccccccccccccccee
Q psy7814 16 RFECSICLEYLKDAIL 31 (460)
Q Consensus 16 ~l~C~iC~~~l~~p~~ 31 (460)
-|+||+|...+..|.+
T Consensus 5 GFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 5 GFICPQCMKSLGSADE 20 (34)
T ss_dssp EEECTTTCCEESSHHH
T ss_pred ccCCcHHHHHcCCHHH
Confidence 4788888877776643
No 142
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=41.16 E-value=25 Score=29.66 Aligned_cols=46 Identities=13% Similarity=0.220 Sum_probs=31.7
Q ss_pred CcccccccccccccceecCCCCcccHhhHHHHHhcCCCCCCCCCcccccc
Q psy7814 15 PRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTK 64 (460)
Q Consensus 15 ~~l~C~iC~~~l~~p~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (460)
+-|.|..|...|.......=|..||..|+.+.+. . .|..|+.++..
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~--~--~C~~C~~~I~~ 77 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG--T--KCAACQLGIPP 77 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS--C--BCTTTCCBCCT
T ss_pred ccCccCCCCCcCCCCCcccCCeeeeccccccccc--c--cccccccccCC
Confidence 4477888888776543345678888888877653 1 38888777654
No 143
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=40.18 E-value=61 Score=19.66 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy7814 275 LLEQSMLEQKIKVNNFELNLKQTE 298 (460)
Q Consensus 275 ~l~~~~~~l~~~~~~l~~~l~~l~ 298 (460)
.|+.++.+|......|+..+..|+
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~ 28 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLE 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444444444444444443
No 144
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=39.96 E-value=40 Score=23.33 Aligned_cols=32 Identities=16% Similarity=0.104 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7814 266 LKLVYERMVLLEQSMLEQKIKVNNFELNLKQT 297 (460)
Q Consensus 266 ~~~l~~~i~~l~~~~~~l~~~~~~l~~~l~~l 297 (460)
+..|..++..|+.++.+|...+..|...+..|
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666665554443
No 145
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=39.68 E-value=59 Score=19.48 Aligned_cols=23 Identities=9% Similarity=0.058 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy7814 268 LVYERMVLLEQSMLEQKIKVNNF 290 (460)
Q Consensus 268 ~l~~~i~~l~~~~~~l~~~~~~l 290 (460)
.+++++..|-.+..+|+..+..|
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHH
Confidence 34444444444444444433333
No 146
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=38.91 E-value=65 Score=19.56 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7814 268 LVYERMVLLEQSMLEQKIKVNNFEL 292 (460)
Q Consensus 268 ~l~~~i~~l~~~~~~l~~~~~~l~~ 292 (460)
.|+.++..|-.+..+|+..+..|+.
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 147
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=38.54 E-value=80 Score=23.03 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7814 264 HLLKLVYERMVLLEQSMLEQKIKVNNFELNLKQTEEIE 301 (460)
Q Consensus 264 ~~~~~l~~~i~~l~~~~~~l~~~~~~l~~~l~~l~~~~ 301 (460)
..+.+|+.|++-++.-+.+|...+..+...|..+.+.+
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql 51 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELI 51 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666555555566665555555555555433
No 148
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=36.94 E-value=75 Score=23.22 Aligned_cols=34 Identities=12% Similarity=0.102 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7814 267 KLVYERMVLLEQSMLEQKIKVNNFELNLKQTEEI 300 (460)
Q Consensus 267 ~~l~~~i~~l~~~~~~l~~~~~~l~~~l~~l~~~ 300 (460)
..+..++..|+.++..|...+..|...+..|..+
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888888877776643
No 149
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=36.85 E-value=1.2e+02 Score=22.06 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7814 269 VYERMVLLEQSMLEQKIKVNNFELNLKQTE 298 (460)
Q Consensus 269 l~~~i~~l~~~~~~l~~~~~~l~~~l~~l~ 298 (460)
+.+||..|+.++.=++..++.|+..+.+-.
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq 41 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADAR 41 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555544444444444444444433
No 150
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=36.75 E-value=73 Score=21.35 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7814 275 LLEQSMLEQKIKVNNFELNLKQTEE 299 (460)
Q Consensus 275 ~l~~~~~~l~~~~~~l~~~l~~l~~ 299 (460)
.|..++.+|..+++.|..++.++.+
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555443
No 151
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=36.62 E-value=9.5 Score=31.48 Aligned_cols=27 Identities=19% Similarity=0.084 Sum_probs=23.1
Q ss_pred CCccccccccccccccccchhHHHH-Hhhhc
Q psy7814 157 NENFPCKFYQVGCREVFKSQALLEK-HYDLK 186 (460)
Q Consensus 157 ~~~v~Cp~~~~GC~~~~~r~~~l~~-H~~~~ 186 (460)
...+.||+ .||.+.+...+ ++. |+..+
T Consensus 102 ~L~v~Cpn--~GC~~~~~l~~-l~~~H~~~~ 129 (141)
T 3knv_A 102 SLPAVCPS--DGCTWKGTLKE-YESCHEGRC 129 (141)
T ss_dssp TSEEECCS--TTCCCEEEHHH-HHHHTTTCC
T ss_pred ccccccCC--CCCCCEeEHHH-HHHHHHHHh
Confidence 34789998 79999999999 998 98764
No 152
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=36.56 E-value=9 Score=27.74 Aligned_cols=53 Identities=15% Similarity=0.240 Sum_probs=33.9
Q ss_pred CCCCccccccccccccc--ceec-CCCCcccHhhHHHHHhcC--CCCCCCCCcccccc
Q psy7814 12 NLDPRFECSICLEYLKD--AILT-SCGHKFCAACIDSWIDVK--GKNYCPIDEKVLTK 64 (460)
Q Consensus 12 ~~~~~l~C~iC~~~l~~--p~~~-~CgH~fC~~Ci~~~~~~~--~~~~CP~Cr~~~~~ 64 (460)
.-.+...|++|...-.. -++. .|...|-..|+....... +...||.|...+..
T Consensus 14 ~~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 14 WGNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp SSCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred cCCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 34556779999987543 2333 788888888886543221 23469999765543
No 153
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=36.40 E-value=34 Score=25.70 Aligned_cols=30 Identities=23% Similarity=0.625 Sum_probs=21.6
Q ss_pred cccccccccccc---ccee-cCCCCcccHhhHHH
Q psy7814 16 RFECSICLEYLK---DAIL-TSCGHKFCAACIDS 45 (460)
Q Consensus 16 ~l~C~iC~~~l~---~p~~-~~CgH~fC~~Ci~~ 45 (460)
.-.|.+|...|. .... -.||..||..|...
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 356999998664 2233 38999999999654
No 154
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=36.30 E-value=29 Score=24.38 Aligned_cols=46 Identities=20% Similarity=0.520 Sum_probs=29.2
Q ss_pred CCCccccccccccc-ccceecCCCCcccHhhHHHHHhcCCCCCCCCCccccc
Q psy7814 13 LDPRFECSICLEYL-KDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLT 63 (460)
Q Consensus 13 ~~~~l~C~iC~~~l-~~p~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (460)
......|..|..-+ ..+..+.||..||..= ++.. ...|+.+-+...
T Consensus 12 k~~~~rC~~C~kkvgl~~f~CrCg~~FC~~H--Ry~e---~H~C~fDyk~~g 58 (64)
T 1wfh_A 12 PQRPNRCTVCRKRVGLTGFMCRCGTTFCGSH--RYPE---VHGCTFDFKSAG 58 (64)
T ss_dssp CSSCCCCTTTCCCCCTTCEECSSSCEECTTT--CSTT---TTTCCCCCSCCC
T ss_pred CCcCCcChhhCCccCccCEEeecCCEecccc--CCcc---cCCCCchhhHHH
Confidence 44557899999854 3467789999999632 1111 124887755443
No 155
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=35.97 E-value=82 Score=19.89 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7814 274 VLLEQSMLEQKIKVNNFELNLKQTEE 299 (460)
Q Consensus 274 ~~l~~~~~~l~~~~~~l~~~l~~l~~ 299 (460)
..|+.+.++++.....|+.+++.+..
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~ 31 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQN 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555544
No 156
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=35.70 E-value=86 Score=20.05 Aligned_cols=28 Identities=11% Similarity=0.082 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7814 273 MVLLEQSMLEQKIKVNNFELNLKQTEEI 300 (460)
Q Consensus 273 i~~l~~~~~~l~~~~~~l~~~l~~l~~~ 300 (460)
+..++.+-..++.+|..++.+|..+.+.
T Consensus 11 vsel~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 11 ISDLNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555443
No 157
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=34.57 E-value=34 Score=24.04 Aligned_cols=47 Identities=23% Similarity=0.516 Sum_probs=29.8
Q ss_pred CCCcccccccccccc-cceecCCCCcccHhhHHHHHhcCCCCCCCCCcccccc
Q psy7814 13 LDPRFECSICLEYLK-DAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTK 64 (460)
Q Consensus 13 ~~~~l~C~iC~~~l~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (460)
......|..|..-+. .+..+.||..||..= ++. ....|+.+-+....
T Consensus 12 ~~~~~rC~~C~kkvgl~~f~CrCg~~FC~~H--R~~---e~H~C~fDyk~~gr 59 (64)
T 1wg2_A 12 VRPNNRCFSCNKKVGVMGFKCKCGSTFCGSH--RYP---EKHECSFDFKEVGS 59 (64)
T ss_dssp SCCSCSCTTTCCCCTTSCEECTTSCEECSSS--CSS---TTTTCCCCCSCSCC
T ss_pred CCcCCcChhhCCcccccCeEeecCCEecccC--CCc---cccCCCcchhHHhH
Confidence 334578999998543 467789999999632 111 11248877655443
No 158
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=33.52 E-value=19 Score=30.93 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=9.1
Q ss_pred cccccccccccccc
Q psy7814 16 RFECSICLEYLKDA 29 (460)
Q Consensus 16 ~l~C~iC~~~l~~p 29 (460)
.-.|..|...+.+.
T Consensus 60 ~~~C~~C~~~I~~~ 73 (182)
T 2jtn_A 60 IPMCAGCDQHILDR 73 (182)
T ss_dssp CCBCBTSSSBCCCS
T ss_pred CCcCccCCCCccCc
Confidence 35677777766654
No 159
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=33.26 E-value=4.9 Score=38.06 Aligned_cols=46 Identities=22% Similarity=0.416 Sum_probs=31.0
Q ss_pred CCcccccccccccccceec----CCCC--cccHhhHHHHHhcCCCCCCCCCccc
Q psy7814 14 DPRFECSICLEYLKDAILT----SCGH--KFCAACIDSWIDVKGKNYCPIDEKV 61 (460)
Q Consensus 14 ~~~l~C~iC~~~l~~p~~~----~CgH--~fC~~Ci~~~~~~~~~~~CP~Cr~~ 61 (460)
...-.||+|+....-.+.. .=|+ .+|.-|-..|--... .||.|+..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~--~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRI--KCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTT--SCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCc--CCcCCCCC
Confidence 5567899999987766543 3564 558888777754433 48888764
No 160
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=32.97 E-value=9 Score=29.25 Aligned_cols=46 Identities=20% Similarity=0.376 Sum_probs=31.6
Q ss_pred Ccccccccccccccc-eecCCCCcccHhhHHHHHhcCCCCCCCCCcccccc
Q psy7814 15 PRFECSICLEYLKDA-ILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTK 64 (460)
Q Consensus 15 ~~l~C~iC~~~l~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (460)
+-|.|..|...|... ....-|..||..|+.+.. ++ .|..|+.++..
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~---~~-~C~~C~~~I~~ 78 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRED---SP-KCKGCFKAIVA 78 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCC---CC-BCSSSCCBCCS
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhhc---CC-ccccCCCcccc
Confidence 347888888888643 234678889988876532 22 48888888764
No 161
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.88 E-value=38 Score=23.68 Aligned_cols=33 Identities=21% Similarity=0.557 Sum_probs=22.1
Q ss_pred cccccccccccccc-eecCCCCcccHhhHHHHHh
Q psy7814 16 RFECSICLEYLKDA-ILTSCGHKFCAACIDSWID 48 (460)
Q Consensus 16 ~l~C~iC~~~l~~p-~~~~CgH~fC~~Ci~~~~~ 48 (460)
-|.|..|...|... ....-|..||..|+.+.+.
T Consensus 33 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 33 CFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp TCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred CCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 37777887777543 3345677888888877664
No 162
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=32.07 E-value=48 Score=18.24 Aligned_cols=15 Identities=13% Similarity=0.171 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy7814 269 VYERMVLLEQSMLEQ 283 (460)
Q Consensus 269 l~~~i~~l~~~~~~l 283 (460)
++.+.++|.+++..+
T Consensus 5 lkqknarlkqeiaal 19 (28)
T 3ra3_B 5 LKQKNARLKQEIAAL 19 (28)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHH
Confidence 333444444444333
No 163
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=31.87 E-value=22 Score=24.59 Aligned_cols=39 Identities=31% Similarity=0.494 Sum_probs=26.7
Q ss_pred cccccccccccce--e-cCCCCcccHhhHHHHHhcCCCCCCCCC
Q psy7814 18 ECSICLEYLKDAI--L-TSCGHKFCAACIDSWIDVKGKNYCPID 58 (460)
Q Consensus 18 ~C~iC~~~l~~p~--~-~~CgH~fC~~Ci~~~~~~~~~~~CP~C 58 (460)
.|-.|...+.+.. + ..|++.||.+|=.-.-+ ....||.|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe--~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHD--SLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTT--TSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHh--hccCCcCC
Confidence 4999999886543 3 48999999999543222 22349887
No 164
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=31.59 E-value=8.8 Score=30.43 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=23.4
Q ss_pred CccccccccccccccccchhHHHHHhhhch
Q psy7814 158 ENFPCKFYQVGCREVFKSQALLEKHYDLKT 187 (460)
Q Consensus 158 ~~v~Cp~~~~GC~~~~~r~~~l~~H~~~~~ 187 (460)
..+.||. .||.+.+...+ +..|++++.
T Consensus 81 l~v~C~n--~gC~~~~~~~~-l~~H~~~c~ 107 (118)
T 3hct_A 81 LMVKCPN--EGCLHKMELRH-LEDHQAHCE 107 (118)
T ss_dssp SEEECSS--TTCCCEEEGGG-SGGGTSSSC
T ss_pred ceeECCC--CCCCCEEeeHH-HHHHHHHch
Confidence 4789996 79999999999 999998753
No 165
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=31.02 E-value=29 Score=30.79 Aligned_cols=33 Identities=24% Similarity=0.549 Sum_probs=23.4
Q ss_pred CCCCcccccccccccc---cceec-CCCCcccHhhHH
Q psy7814 12 NLDPRFECSICLEYLK---DAILT-SCGHKFCAACID 44 (460)
Q Consensus 12 ~~~~~l~C~iC~~~l~---~p~~~-~CgH~fC~~Ci~ 44 (460)
...+.-.|.+|...|. ...-+ .||..||..|..
T Consensus 157 ~W~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 157 NWADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CCCCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred cCCCCCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 3345578999998764 22344 899999998854
No 166
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=30.54 E-value=1.4e+02 Score=24.12 Aligned_cols=44 Identities=9% Similarity=0.050 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy7814 262 NSHLLKLVYERMVLLEQSMLEQKIKVNNFELNLKQTEEIEDNVV 305 (460)
Q Consensus 262 ~~~~~~~l~~~i~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~ 305 (460)
++++.+++-++|..|+.+.-+++..+...+-.|++|...++++.
T Consensus 63 L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~ 106 (133)
T 1j1d_C 63 LQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHH
Confidence 45667788899999999988888888888888888877666664
No 167
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=30.10 E-value=23 Score=30.07 Aligned_cols=131 Identities=16% Similarity=0.259 Sum_probs=61.4
Q ss_pred CCcccccccccccccceec---CCCCcccHhhHHHHHhcCCCCCCCCCcccccccccccchHHHHHHHhccccCCCCCCC
Q psy7814 14 DPRFECSICLEYLKDAILT---SCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNYTRREILENNLTCPYKQCS 90 (460)
Q Consensus 14 ~~~l~C~iC~~~l~~p~~~---~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n~gC~ 90 (460)
+..|.|++|...+.....+ .-.|. ......|+.|+..+...... ...+..........| .-|+
T Consensus 19 ~~~~~C~~C~~~f~~~~~l~~H~~~h~-----------~~~~~~C~~C~~~f~~~~~l-~~H~~~h~~~~~~~C--~~C~ 84 (190)
T 2i13_A 19 EKPYACPECGKSFSRSDHLAEHQRTHT-----------GEKPYKCPECGKSFSDKKDL-TRHQRTHTGEKPYKC--PECG 84 (190)
T ss_dssp ------------CCSSHHHHHGGGCC--------------CCEECTTTCCEESSHHHH-HHHHHHHHCCCCEEC--TTTC
T ss_pred CCCCcCCCCccccCCHHHHHHHHHHcC-----------CCCCccCCCcCchhCCHHHH-HHHHHhcCCCCCccC--cccC
Confidence 3458899998887655321 00110 11224599998776542110 001111112345567 4576
Q ss_pred ceee-ccccccccccc-cccccCCCcccccCCCCCCCCCCCCCCccCCCCccc-cccchhhhhhhcCCCCCccccccccc
Q psy7814 91 SQLS-IPEYESHVNTC-YLKYSQPSVEDITDSPTSSFRNTSGIPTNKRNSKIL-TVTVFPEHLNMQGSSNENFPCKFYQV 167 (460)
Q Consensus 91 ~~~~-l~~l~~H~~~C-~~~~~~C~~~~~~~h~~c~~~~~~~~~~~~~c~~~~-~r~~l~~H~~~~c~~~~~v~Cp~~~~ 167 (460)
.... ...|..|...- .-....|+ .|+... ....|..|+..--. ..+..|++
T Consensus 85 ~~f~~~~~l~~H~~~h~~~~~~~C~----------------------~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~--- 138 (190)
T 2i13_A 85 KSFSQRANLRAHQRTHTGEKPYACP----------------------ECGKSFSQLAHLRAHQRTHTG-EKPYKCPE--- 138 (190)
T ss_dssp CEESCHHHHHHHHHHHHTCCCEECT----------------------TTCCEESSHHHHHHHHHHHHC-CCCEECTT---
T ss_pred CccCCHHHHHHHHHhcCCCCCCcCC----------------------CCCCccCCHHHHHHHHHHhCC-CCCeECCC---
Confidence 5543 34466676432 11223343 455443 45668888865322 45688987
Q ss_pred cccccccchhHHHHHhhh
Q psy7814 168 GCREVFKSQALLEKHYDL 185 (460)
Q Consensus 168 GC~~~~~r~~~l~~H~~~ 185 (460)
|...+.....|..|+..
T Consensus 139 -C~~~f~~~~~L~~H~~~ 155 (190)
T 2i13_A 139 -CGKSFSREDNLHTHQRT 155 (190)
T ss_dssp -TCCEESCHHHHHHHHHH
T ss_pred -CCcccCCHHHHHHHHHh
Confidence 99998887768888754
No 168
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=29.91 E-value=1.6e+02 Score=21.77 Aligned_cols=26 Identities=4% Similarity=0.138 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7814 273 MVLLEQSMLEQKIKVNNFELNLKQTE 298 (460)
Q Consensus 273 i~~l~~~~~~l~~~~~~l~~~l~~l~ 298 (460)
|.....++.+|+..|+..+..|.+|+
T Consensus 53 l~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 53 ISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444445555555555554443
No 169
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=29.75 E-value=80 Score=21.93 Aligned_cols=22 Identities=9% Similarity=0.016 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy7814 268 LVYERMVLLEQSMLEQKIKVNN 289 (460)
Q Consensus 268 ~l~~~i~~l~~~~~~l~~~~~~ 289 (460)
.|..++..|+.++..|...+..
T Consensus 34 ~Le~~v~~L~~eN~~L~~ev~~ 55 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENEVAR 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333333
No 170
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=29.65 E-value=92 Score=18.52 Aligned_cols=17 Identities=0% Similarity=0.079 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy7814 269 VYERMVLLEQSMLEQKI 285 (460)
Q Consensus 269 l~~~i~~l~~~~~~l~~ 285 (460)
+++++..|-++...|+.
T Consensus 5 LEdKvEeLl~~~~~Le~ 21 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXEN 21 (33)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHH
Confidence 33444444333333333
No 171
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=29.64 E-value=1.6e+02 Score=21.80 Aligned_cols=29 Identities=3% Similarity=0.197 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy7814 277 EQSMLEQKIKVNNFELNLKQTEEIEDNVV 305 (460)
Q Consensus 277 ~~~~~~l~~~~~~l~~~l~~l~~~~~~~~ 305 (460)
..++..+...|..++..|......+.++.
T Consensus 50 ~~el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 50 ENEISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566666677777777776665555543
No 172
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=29.59 E-value=1.5e+02 Score=22.87 Aligned_cols=43 Identities=12% Similarity=0.114 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy7814 262 NSHLLKLVYERMVLLEQSMLEQKIKVNNFELNLKQTEEIEDNV 304 (460)
Q Consensus 262 ~~~~~~~l~~~i~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~ 304 (460)
..+....+.+++..++.++..++..+..++..+.++...+.++
T Consensus 68 ~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 68 KDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888888888888888888888888777776554433
No 173
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=29.56 E-value=87 Score=18.79 Aligned_cols=15 Identities=0% Similarity=-0.057 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy7814 269 VYERMVLLEQSMLEQ 283 (460)
Q Consensus 269 l~~~i~~l~~~~~~l 283 (460)
+++++..|-.+...+
T Consensus 6 LEdKvEeLl~~~~~L 20 (34)
T 2bni_A 6 IEDKLEEILSKGHHI 20 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHH
Confidence 333333333333333
No 174
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=29.56 E-value=63 Score=23.35 Aligned_cols=26 Identities=23% Similarity=0.584 Sum_probs=20.2
Q ss_pred Ccccccccccc-cccceecCCCCcccH
Q psy7814 15 PRFECSICLEY-LKDAILTSCGHKFCA 40 (460)
Q Consensus 15 ~~l~C~iC~~~-l~~p~~~~CgH~fC~ 40 (460)
....|..|..- -..+..+.||..||.
T Consensus 24 ~~nRC~~CrKkvgL~gf~CrCg~~FCs 50 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCRCGNLFCG 50 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECTTSCEECS
T ss_pred cCCcChhhCCcccccCeecCCCCEech
Confidence 34679999885 345777889999996
No 175
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=29.50 E-value=62 Score=23.31 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7814 269 VYERMVLLEQSMLEQKIKVNNFELNLKQ 296 (460)
Q Consensus 269 l~~~i~~l~~~~~~l~~~~~~l~~~l~~ 296 (460)
..+|+..++.++..++..+.-|+.+++.
T Consensus 43 ce~KLa~ln~kL~~lE~~L~iLEAklsS 70 (73)
T 3pp5_A 43 TRNKLSDLNEKLTILDRQVDYLEATFKT 70 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566677777777777767666666654
No 176
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=28.91 E-value=35 Score=25.58 Aligned_cols=31 Identities=23% Similarity=0.569 Sum_probs=21.8
Q ss_pred CCccccccccccccc---cee-cCCCCcccHhhHH
Q psy7814 14 DPRFECSICLEYLKD---AIL-TSCGHKFCAACID 44 (460)
Q Consensus 14 ~~~l~C~iC~~~l~~---p~~-~~CgH~fC~~Ci~ 44 (460)
.+.-.|.+|...|.- -.- -.||..||..|..
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 41 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLS 41 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSC
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcC
Confidence 345579999986642 233 3899999998854
No 177
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=28.89 E-value=25 Score=25.04 Aligned_cols=44 Identities=16% Similarity=0.303 Sum_probs=30.1
Q ss_pred Cccccccccccccc-ceecCCCCcccH-hhHHHHHhcCCCCCCCCCcccc
Q psy7814 15 PRFECSICLEYLKD-AILTSCGHKFCA-ACIDSWIDVKGKNYCPIDEKVL 62 (460)
Q Consensus 15 ~~l~C~iC~~~l~~-p~~~~CgH~fC~-~Ci~~~~~~~~~~~CP~Cr~~~ 62 (460)
+-|.|..|...|.. +....-|..||. .|+.+.+. . .|..|+..+
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~--~--~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG--P--KGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSS--C--CCSSCCCSS
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHHhC--c--cCCCcCCce
Confidence 45788899888865 444567888998 69876542 1 387776543
No 178
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=28.17 E-value=1.4e+02 Score=21.23 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7814 266 LKLVYERMVLLEQSMLEQKIKVNNFELNLKQTE 298 (460)
Q Consensus 266 ~~~l~~~i~~l~~~~~~l~~~~~~l~~~l~~l~ 298 (460)
+++|..++..|+.....+......|...+..|.
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555444444444444444444443
No 179
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=28.04 E-value=1.3e+02 Score=19.65 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7814 267 KLVYERMVLLEQSMLEQKIKVNNFEL 292 (460)
Q Consensus 267 ~~l~~~i~~l~~~~~~l~~~~~~l~~ 292 (460)
....+.+..|.+++.....+++.++.
T Consensus 19 ~~v~~~l~~Lt~kL~~vt~rle~lEn 44 (47)
T 1aq5_A 19 TKVEELINTLQQKLEAVAKRIEALEN 44 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555666555554444444443
No 180
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=27.71 E-value=1.4e+02 Score=19.88 Aligned_cols=39 Identities=13% Similarity=0.001 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7814 264 HLLKLVYERMVLLEQSMLEQKIKVNNFELNLKQTEEIED 302 (460)
Q Consensus 264 ~~~~~l~~~i~~l~~~~~~l~~~~~~l~~~l~~l~~~~~ 302 (460)
..+.++..++..|..++..|...+..-..+|..+...+.
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666666666666655555555555554433
No 181
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=27.60 E-value=38 Score=24.87 Aligned_cols=29 Identities=28% Similarity=0.700 Sum_probs=21.4
Q ss_pred cccccccccccc---ceec-CCCCcccHhhHHH
Q psy7814 17 FECSICLEYLKD---AILT-SCGHKFCAACIDS 45 (460)
Q Consensus 17 l~C~iC~~~l~~---p~~~-~CgH~fC~~Ci~~ 45 (460)
-.|.+|...|.- .... .||..||..|...
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 469999987742 2333 8999999999653
No 182
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=27.56 E-value=20 Score=26.31 Aligned_cols=33 Identities=24% Similarity=0.658 Sum_probs=24.1
Q ss_pred cccccc--cccccc-----cceec------CCCCcccHhhHHHHHh
Q psy7814 16 RFECSI--CLEYLK-----DAILT------SCGHKFCAACIDSWID 48 (460)
Q Consensus 16 ~l~C~i--C~~~l~-----~p~~~------~CgH~fC~~Ci~~~~~ 48 (460)
...||- |..++. .+++. .||+.||..|-..|-.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 556987 988764 23455 6999999999887643
No 183
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=27.46 E-value=1.7e+02 Score=22.07 Aligned_cols=40 Identities=10% Similarity=0.035 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7814 262 NSHLLKLVYERMVLLEQSMLEQKIKVNNFELNLKQTEEIE 301 (460)
Q Consensus 262 ~~~~~~~l~~~i~~l~~~~~~l~~~~~~l~~~l~~l~~~~ 301 (460)
..+....+.+++..++.++..++..+..++..+.++...+
T Consensus 63 ~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 63 KDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667778888888888887777777777777766543
No 184
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.33 E-value=39 Score=23.37 Aligned_cols=33 Identities=18% Similarity=0.533 Sum_probs=21.6
Q ss_pred cccccccccccccce-ecCCCCcccHhhHHHHHh
Q psy7814 16 RFECSICLEYLKDAI-LTSCGHKFCAACIDSWID 48 (460)
Q Consensus 16 ~l~C~iC~~~l~~p~-~~~CgH~fC~~Ci~~~~~ 48 (460)
-|.|..|...|.... ...-|..||..|+.+.+.
T Consensus 31 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 31 CFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp TTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHT
T ss_pred cCEECCCCCCCCCCccEeECCEEECHHHhHHHhc
Confidence 467777877775432 345677788888776653
No 185
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=27.09 E-value=4.6 Score=29.97 Aligned_cols=41 Identities=20% Similarity=0.494 Sum_probs=23.7
Q ss_pred ccccccccccccceecCCCCcccHhhHHHHHhcCCCCCCCCCcccccc
Q psy7814 17 FECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTK 64 (460)
Q Consensus 17 l~C~iC~~~l~~p~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (460)
..||.|...+..- =++.+|..|-..+... . .||.|+.++..
T Consensus 3 ~~CP~C~~~l~~~----~~~~~C~~C~~~~~~~-a--fCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALERN----GDTAHCETCAKDFSLQ-A--LCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEEC----SSEEECTTTCCEEEEE-E--ECSSSCSCCCE
T ss_pred CCCCCCCCccccC----CCceECccccccCCCc-c--cCcchhhHHHH
Confidence 5799999876521 1233466664433222 2 38888887753
No 186
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.04 E-value=33 Score=24.33 Aligned_cols=45 Identities=22% Similarity=0.347 Sum_probs=29.1
Q ss_pred CCcccccccccccccc----eecCCCCcccHhhHHHHHhcCCCCCCCCCccccc
Q psy7814 14 DPRFECSICLEYLKDA----ILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLT 63 (460)
Q Consensus 14 ~~~l~C~iC~~~l~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (460)
.....|..|...+--+ ..+.||..||..= ++... ..|+.+-+...
T Consensus 13 ~~~~rC~~C~kk~gL~~~egf~CrCg~~FC~~H--Ry~e~---H~C~fDyk~~g 61 (67)
T 1x4w_A 13 KSRRRCFQCQTKLELVQQELGSCRCGYVFCMLH--RLPEQ---HDCTFDHMGRG 61 (67)
T ss_dssp SCTTBCSSSCCBCCHHHHHHHCCSSSCCCCTTT--CSTGG---GTCSSCSSCSS
T ss_pred ccCCcchhhCCeecccccCceEecCCCEehhcc--CCccc---cCCcccccccc
Confidence 3456899999988766 5679999999632 11111 13777754433
No 187
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=26.85 E-value=57 Score=20.86 Aligned_cols=45 Identities=18% Similarity=0.389 Sum_probs=31.1
Q ss_pred CCCcc-ccccchhhhhhhcCCCCCccccccccccccccccchhHHHHHhhh
Q psy7814 136 RNSKI-LTVTVFPEHLNMQGSSNENFPCKFYQVGCREVFKSQALLEKHYDL 185 (460)
Q Consensus 136 ~c~~~-~~r~~l~~H~~~~c~~~~~v~Cp~~~~GC~~~~~r~~~l~~H~~~ 185 (460)
.|+.. .....|..|+..-.. .....|++ |...+.+...|..|+..
T Consensus 6 ~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~----C~~~f~~~~~l~~H~~~ 51 (57)
T 1bbo_A 6 ECGIRXKKPSMLKKHIRTHTD-VRPYHCTY----CNFSFKTKGNLTKHMKS 51 (57)
T ss_dssp TTCCBCSSHHHHHHHHHHTSS-CCCEECSS----SSCEESSHHHHHHHHHS
T ss_pred CCcCcCCCHHHHHHHHHhcCC-CCCccCCC----CCchhcCHHHHHHHHHH
Confidence 45543 345678888876432 45678987 99888887768888754
No 188
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=26.53 E-value=1e+02 Score=18.40 Aligned_cols=21 Identities=10% Similarity=0.007 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy7814 269 VYERMVLLEQSMLEQKIKVNN 289 (460)
Q Consensus 269 l~~~i~~l~~~~~~l~~~~~~ 289 (460)
+.+++..|-.+..+|...+..
T Consensus 6 LEdkVEeLl~~~~~Le~eV~R 26 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVAR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHH
Confidence 333443333333333333333
No 189
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=26.51 E-value=85 Score=29.69 Aligned_cols=31 Identities=10% Similarity=0.035 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7814 269 VYERMVLLEQSMLEQKIKVNNFELNLKQTEE 299 (460)
Q Consensus 269 l~~~i~~l~~~~~~l~~~~~~l~~~l~~l~~ 299 (460)
..++|..|+..+..+..+|..|+.+|.+++.
T Consensus 24 ~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 24 HDAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555443
No 190
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=26.28 E-value=25 Score=27.37 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=18.2
Q ss_pred ccccee-cCCCCcccHhhHHHHHhcCCCCCCCCCccccc
Q psy7814 26 LKDAIL-TSCGHKFCAACIDSWIDVKGKNYCPIDEKVLT 63 (460)
Q Consensus 26 l~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (460)
+..|.. ..||+.|+. ....+..||.|+..-.
T Consensus 64 ~v~p~~C~~CG~~F~~-------~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 64 LIKPAQCRKCGFVFKA-------EINIPSRCPKCKSEWI 95 (105)
T ss_dssp EECCCBBTTTCCBCCC-------CSSCCSSCSSSCCCCB
T ss_pred EEECcChhhCcCeecc-------cCCCCCCCcCCCCCcc
Confidence 334444 489999921 1223346999986543
No 191
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=26.00 E-value=1.1e+02 Score=28.96 Aligned_cols=38 Identities=5% Similarity=-0.091 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy7814 268 LVYERMVLLEQSMLEQKIKVNNFELNLKQTEEIEDNVV 305 (460)
Q Consensus 268 ~l~~~i~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~ 305 (460)
.++..+...+.+++.|+..+..++.+|.+|++.+..++
T Consensus 16 ~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 16 ILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666677777777777777766555444
No 192
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=25.96 E-value=3.4e+02 Score=26.40 Aligned_cols=12 Identities=17% Similarity=0.232 Sum_probs=8.1
Q ss_pred Ccccccccccccccc
Q psy7814 158 ENFPCKFYQVGCREV 172 (460)
Q Consensus 158 ~~v~Cp~~~~GC~~~ 172 (460)
.-+-|| -||...
T Consensus 15 ~G~~CP---T~C~i~ 26 (409)
T 1m1j_C 15 FGSYCP---TTCGIA 26 (409)
T ss_dssp GCCEEE---CTTHHH
T ss_pred cCCcCC---CcccHH
Confidence 457788 588754
No 193
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=25.86 E-value=1.5e+02 Score=22.66 Aligned_cols=34 Identities=12% Similarity=0.021 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7814 263 SHLLKLVYERMVLLEQSMLEQKIKVNNFELNLKQ 296 (460)
Q Consensus 263 ~~~~~~l~~~i~~l~~~~~~l~~~~~~l~~~l~~ 296 (460)
++.+..+.++|..|+.+..+|...+..|+.+|..
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888899999999988888888887776644
No 194
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.83 E-value=36 Score=24.46 Aligned_cols=30 Identities=10% Similarity=0.141 Sum_probs=17.5
Q ss_pred CCCcccccccccccccceecCCCCcccHhh
Q psy7814 13 LDPRFECSICLEYLKDAILTSCGHKFCAAC 42 (460)
Q Consensus 13 ~~~~l~C~iC~~~l~~p~~~~CgH~fC~~C 42 (460)
....-.|..|...+...++..-+..|-..|
T Consensus 12 ~~~~~~C~~C~~~I~~~~~~a~~~~~H~~C 41 (79)
T 1x62_A 12 AQKLPMCDKCGTGIVGVFVKLRDRHRHPEC 41 (79)
T ss_dssp CCCCCCCSSSCCCCCSSCEECSSCEECTTT
T ss_pred CCCCCccccCCCCccCcEEEECcceeCcCc
Confidence 344556888888776654444454444444
No 195
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=25.67 E-value=1.7e+02 Score=20.60 Aligned_cols=36 Identities=22% Similarity=0.383 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7814 263 SHLLKLVYERMVLLEQSMLEQKIKVNNFELNLKQTE 298 (460)
Q Consensus 263 ~~~~~~l~~~i~~l~~~~~~l~~~~~~l~~~l~~l~ 298 (460)
.+.++.-.++|..|+..+.+.+..+..|+.+|....
T Consensus 17 ~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 17 AKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677788888877777777777777665543
No 196
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=25.47 E-value=44 Score=23.89 Aligned_cols=53 Identities=19% Similarity=0.428 Sum_probs=31.6
Q ss_pred CCCCCCCccccccccccccccee-c-C--CC-CcccHhhHHHHHhcCCCCCCCCCcccc
Q psy7814 9 NKLNLDPRFECSICLEYLKDAIL-T-S--CG-HKFCAACIDSWIDVKGKNYCPIDEKVL 62 (460)
Q Consensus 9 ~~~~~~~~l~C~iC~~~l~~p~~-~-~--Cg-H~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (460)
......+...| +|..+....++ . . |. ..|-..|+.-.....+...||.|....
T Consensus 9 ~~~d~~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 9 MPVDPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCCTTSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCS
T ss_pred cccCCCCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCccc
Confidence 33455567788 89987554443 2 4 65 577778876221112334699997543
No 197
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=25.30 E-value=74 Score=22.96 Aligned_cols=45 Identities=20% Similarity=0.500 Sum_probs=28.4
Q ss_pred CCcccccccccccc-cceecCCCCcccHhhHHHHHhcCCCCCCCCCccccc
Q psy7814 14 DPRFECSICLEYLK-DAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLT 63 (460)
Q Consensus 14 ~~~l~C~iC~~~l~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (460)
.....|..|..-+. .+..+.||..||..= ++.. . ..|+.+-+...
T Consensus 23 ~~~~RC~~C~kkvgL~~f~CrCg~~FCs~H--Ry~e--~-H~C~fDyk~~g 68 (74)
T 1wfp_A 23 STATRCLSCNKKVGVTGFKCRCGSTFCGTH--RYPE--S-HECQFDFKGVA 68 (74)
T ss_dssp CCCCBCSSSCCBCTTTCEECTTSCEECTTT--CSTT--T-SCCCSCTTSCC
T ss_pred ccCccchhhcCcccccceEeccCCEecccc--CCCc--C-CCCcCchhHHh
Confidence 34578999986543 367789999999632 1111 1 24888755443
No 198
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=25.27 E-value=70 Score=23.86 Aligned_cols=29 Identities=24% Similarity=0.697 Sum_probs=23.6
Q ss_pred CCCCcccccc--cccccccceecC-CCCcccH
Q psy7814 12 NLDPRFECSI--CLEYLKDAILTS-CGHKFCA 40 (460)
Q Consensus 12 ~~~~~l~C~i--C~~~l~~p~~~~-CgH~fC~ 40 (460)
.......|+. |.....-|+.+. |+..||.
T Consensus 21 ~~~~~~~C~~~~Ck~~~~l~f~C~~C~~~FC~ 52 (86)
T 1wfe_A 21 DEHKSYSCSFKGCTDVELVAVICPYCEKNFCL 52 (86)
T ss_dssp SCSCCEECCSTTCCCEESSCEECTTTCCEECG
T ss_pred cCCCCCCCCCcCCCCCCccceECCCCCccccc
Confidence 4555688999 999877888875 9999996
No 199
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=25.19 E-value=71 Score=21.97 Aligned_cols=37 Identities=16% Similarity=0.513 Sum_probs=26.0
Q ss_pred CCCCCCcccccccccc--ccccee-cCCCCcccH-hhHHHH
Q psy7814 10 KLNLDPRFECSICLEY--LKDAIL-TSCGHKFCA-ACIDSW 46 (460)
Q Consensus 10 ~~~~~~~l~C~iC~~~--l~~p~~-~~CgH~fC~-~Ci~~~ 46 (460)
.+.++..-.|.||..- ...... ..|+-.||. .|....
T Consensus 5 ~s~m~~~~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k~H 45 (59)
T 1x4s_A 5 SSGMEPAGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTH 45 (59)
T ss_dssp CSSCCCCEEECSSCTTCCEEECEECTTTCCEESSHHHHHHH
T ss_pred CCCCCCCCcCcCCCCCcCCCccccCcCCCCCccChHHHHHH
Confidence 4456667789999863 333344 489999997 888764
No 200
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=25.14 E-value=1.8e+02 Score=20.53 Aligned_cols=35 Identities=9% Similarity=0.166 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7814 264 HLLKLVYERMVLLEQSMLEQKIKVNNFELNLKQTE 298 (460)
Q Consensus 264 ~~~~~l~~~i~~l~~~~~~l~~~~~~l~~~l~~l~ 298 (460)
..++.+...|..+.+++..++..+..++..+..|+
T Consensus 8 nsVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~ 42 (74)
T 1avy_A 8 NKIKAIETDIASVRQEVNTAKGNISSLQGDVQALQ 42 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhcccccchhhhheeeccccchhhhhhhhhHHHH
Confidence 34567777777777777666665555555555544
No 201
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.89 E-value=49 Score=22.51 Aligned_cols=45 Identities=20% Similarity=0.310 Sum_probs=31.6
Q ss_pred CCCccc-cccchhhhhhhcCCCCCccccccccccccccccchhHHHHHhhh
Q psy7814 136 RNSKIL-TVTVFPEHLNMQGSSNENFPCKFYQVGCREVFKSQALLEKHYDL 185 (460)
Q Consensus 136 ~c~~~~-~r~~l~~H~~~~c~~~~~v~Cp~~~~GC~~~~~r~~~l~~H~~~ 185 (460)
.|+... .+..|..|+..-.. .....|++ |...+.+...|..|+..
T Consensus 14 ~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~----C~~~f~~~~~L~~H~~~ 59 (70)
T 1x5w_A 14 ECSYSCSSKAALRIHERIHCT-DRPFKCNY----CSFDTKQPSNLSKHMKK 59 (70)
T ss_dssp SSSCEESSHHHHHHHHGGGCC-SCSEECSS----SSCEESSHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHcCC-CCCEeCCC----CCCccCCHHHHHHHHHH
Confidence 455543 46678889876432 45688998 99998887768888754
No 202
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.25 E-value=54 Score=24.48 Aligned_cols=41 Identities=22% Similarity=0.400 Sum_probs=30.9
Q ss_pred CCCccc--cccchhhhhhhcCCCCCccccccccccccccccchhHHHHH
Q psy7814 136 RNSKIL--TVTVFPEHLNMQGSSNENFPCKFYQVGCREVFKSQALLEKH 182 (460)
Q Consensus 136 ~c~~~~--~r~~l~~H~~~~c~~~~~v~Cp~~~~GC~~~~~r~~~l~~H 182 (460)
.|++.. .+..|..|+... . .....|+. |...+.+...|..|
T Consensus 39 ~C~k~F~~~~~~L~~H~~~h-~-~k~~~C~~----Cgk~F~~~~~L~~H 81 (96)
T 2ctd_A 39 TCQAVGRKTIEGLKKHMENC-K-QEMFTCHH----CGKQLRSLAGMKYH 81 (96)
T ss_dssp TTCSCEESSHHHHHHHHHHH-C-CCCCCCSS----SCCCCSSHHHHHHH
T ss_pred CCCCCcccCHHHHHHHHHHH-C-CCCeECCC----CCCeeCCHHHHHHH
Confidence 566655 577889998765 3 55778887 99888877768888
No 203
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=23.93 E-value=85 Score=22.71 Aligned_cols=26 Identities=12% Similarity=0.270 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7814 269 VYERMVLLEQSMLEQKIKVNNFELNL 294 (460)
Q Consensus 269 l~~~i~~l~~~~~~l~~~~~~l~~~l 294 (460)
..+|+..|+.++..++..+.-++.++
T Consensus 43 ce~KLa~ln~KL~~LEr~L~iLEAkl 68 (75)
T 3p8c_E 43 CRSRLATLNEKLTALERRIEYIEARV 68 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666655555555544
No 204
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=23.79 E-value=2e+02 Score=20.54 Aligned_cols=29 Identities=10% Similarity=0.031 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7814 267 KLVYERMVLLEQSMLEQKIKVNNFELNLK 295 (460)
Q Consensus 267 ~~l~~~i~~l~~~~~~l~~~~~~l~~~l~ 295 (460)
+...++|..|+.++.+++..+..|+.+|.
T Consensus 36 r~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 36 RQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555443
No 205
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=23.64 E-value=73 Score=20.60 Aligned_cols=44 Identities=18% Similarity=0.492 Sum_probs=30.4
Q ss_pred CCCccc-cccchhhhhhhcCCCCCccccccccccccccccchhHHHHHhh
Q psy7814 136 RNSKIL-TVTVFPEHLNMQGSSNENFPCKFYQVGCREVFKSQALLEKHYD 184 (460)
Q Consensus 136 ~c~~~~-~r~~l~~H~~~~c~~~~~v~Cp~~~~GC~~~~~r~~~l~~H~~ 184 (460)
.|+... ....|..|+..-.. .....|+. |...+.+...|..|+.
T Consensus 7 ~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~----C~~~f~~~~~l~~H~~ 51 (60)
T 2adr_A 7 VCTRAFARQEHLKRHYRSHTN-EKPYPCGL----CNRAFTRRDLLIRHAQ 51 (60)
T ss_dssp TTCCCBSCHHHHHHHHHTTTS-SCSEECTT----TCCEESSHHHHHHHHT
T ss_pred CCccccCCHHHHHHHHHHhCC-CCCccCCC----CCCccCCHHHHHHHHH
Confidence 455433 46678889865432 44678987 9998888776888864
No 206
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=23.44 E-value=60 Score=23.84 Aligned_cols=45 Identities=24% Similarity=0.480 Sum_probs=33.5
Q ss_pred CCCccc-cccchhhhhhhcCCCCCccccccccccccccccchhHHHHHhhh
Q psy7814 136 RNSKIL-TVTVFPEHLNMQGSSNENFPCKFYQVGCREVFKSQALLEKHYDL 185 (460)
Q Consensus 136 ~c~~~~-~r~~l~~H~~~~c~~~~~v~Cp~~~~GC~~~~~r~~~l~~H~~~ 185 (460)
.|++.. .+..|..|+..--. ..+..|++ |...+.+...|..|++.
T Consensus 33 ~Cgk~F~~~~~L~~H~~~H~~-~k~~~C~~----C~k~F~~~~~L~~H~~~ 78 (85)
T 2lv2_A 33 VCGESFASKGAQERHLRLLHA-AQVFPCKY----CPATFYSSPGLTRHINK 78 (85)
T ss_dssp TSCCEESSHHHHHHHHHTTSC-SSSEECTT----SSCEESSHHHHHHHHHT
T ss_pred CCCCCcCcHHHHhhhhhhccC-CCccCCCC----CCCEeCCHHHHHHhCcc
Confidence 566654 56789999875432 45788988 99999888879999754
No 207
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=23.37 E-value=62 Score=22.13 Aligned_cols=45 Identities=16% Similarity=0.387 Sum_probs=31.2
Q ss_pred CCCccc-cccchhhhhhhcCCCCCccccccccccccccccchhHHHHHhhh
Q psy7814 136 RNSKIL-TVTVFPEHLNMQGSSNENFPCKFYQVGCREVFKSQALLEKHYDL 185 (460)
Q Consensus 136 ~c~~~~-~r~~l~~H~~~~c~~~~~v~Cp~~~~GC~~~~~r~~~l~~H~~~ 185 (460)
.|++.. .+..|..|+..-.. .....|++ |...+.+...|..|+..
T Consensus 19 ~C~k~f~~~~~L~~H~~~h~~-~~~~~C~~----C~~~f~~~~~L~~H~~~ 64 (72)
T 1x6e_A 19 ECGKAFSRSSILVQHQRVHTG-EKPYKCLE----CGKAFSQNSGLINHQRI 64 (72)
T ss_dssp SSCCEESSHHHHHHHHHGGGC-SCCEECSS----SCCEESSHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHhcCC-CCCeECCC----CCcccCCHHHHHHHHHh
Confidence 455443 45668888865432 45688987 99998887768888754
No 208
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=23.33 E-value=47 Score=29.62 Aligned_cols=32 Identities=25% Similarity=0.516 Sum_probs=22.7
Q ss_pred CCCccccccccccccc---ceec-CCCCcccHhhHH
Q psy7814 13 LDPRFECSICLEYLKD---AILT-SCGHKFCAACID 44 (460)
Q Consensus 13 ~~~~l~C~iC~~~l~~---p~~~-~CgH~fC~~Ci~ 44 (460)
..+.-.|.+|...|.- -..+ .||..||..|-.
T Consensus 161 W~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~ 196 (226)
T 3zyq_A 161 WVDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSS 196 (226)
T ss_dssp CCCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCC
T ss_pred cccCCCCcCcCCCCCccccccccCCCcCEeChhhcC
Confidence 3445689999986642 2333 899999999854
No 209
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.28 E-value=41 Score=23.38 Aligned_cols=31 Identities=29% Similarity=0.718 Sum_probs=16.9
Q ss_pred ccccccccccccce-ecCCCCcccHhhHHHHH
Q psy7814 17 FECSICLEYLKDAI-LTSCGHKFCAACIDSWI 47 (460)
Q Consensus 17 l~C~iC~~~l~~p~-~~~CgH~fC~~Ci~~~~ 47 (460)
|.|..|...|.+-. ...-|..||..|+.+..
T Consensus 32 F~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~ 63 (70)
T 2d8x_A 32 FRCDLCQEVLADIGFVKNAGRHLCRPCHNREK 63 (70)
T ss_dssp SBCSSSCCBCSSSCCEEETTEEECHHHHHHHH
T ss_pred CEeCCCCCcCCCCccEeECCeEECHHHhhhhc
Confidence 55666666555432 23455666666665544
No 210
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=23.27 E-value=47 Score=25.09 Aligned_cols=50 Identities=20% Similarity=0.460 Sum_probs=29.5
Q ss_pred CCCCccccccccccccccee-c-C--CC-CcccHhhHHHHHhcCCCCCCCCCcccc
Q psy7814 12 NLDPRFECSICLEYLKDAIL-T-S--CG-HKFCAACIDSWIDVKGKNYCPIDEKVL 62 (460)
Q Consensus 12 ~~~~~l~C~iC~~~l~~p~~-~-~--Cg-H~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (460)
...+...| +|..+....++ + . |. ..|-..|+.-.....+...||.|+...
T Consensus 32 d~~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 32 DPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CSCCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred CCCCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence 44566778 99997654433 2 4 54 467777776221112335699997643
No 211
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=22.87 E-value=41 Score=26.78 Aligned_cols=38 Identities=18% Similarity=0.375 Sum_probs=23.3
Q ss_pred cccccccccccccce-ecCCCCcccHhhHHHHHhcCCCCCCCCCccccc
Q psy7814 16 RFECSICLEYLKDAI-LTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLT 63 (460)
Q Consensus 16 ~l~C~iC~~~l~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (460)
.-.|..|...+.+.. ...-|..|-..|+. |..|+.+|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~----------C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCLK----------CSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTSB----------CTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccccC----------cCcCCCccc
Confidence 457999999887663 33455455445532 666666654
No 212
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=22.70 E-value=58 Score=20.81 Aligned_cols=45 Identities=18% Similarity=0.332 Sum_probs=30.6
Q ss_pred CCCcc-ccccchhhhhhhcCCCCCccccccccccccccccchhHHHHHhhh
Q psy7814 136 RNSKI-LTVTVFPEHLNMQGSSNENFPCKFYQVGCREVFKSQALLEKHYDL 185 (460)
Q Consensus 136 ~c~~~-~~r~~l~~H~~~~c~~~~~v~Cp~~~~GC~~~~~r~~~l~~H~~~ 185 (460)
.|+.. .....|..|+..--. ..+..|++ |...+.+...|..|+..
T Consensus 9 ~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~----C~~~f~~~~~l~~H~~~ 54 (57)
T 3uk3_C 9 YCGKFFRSNYYLNIHLRTHTG-EKPYKCEF----CEYAAAQKTSLRYHLER 54 (57)
T ss_dssp TTCCBCSCHHHHHHHHHHHHC-CCCEECSS----SSCEESSHHHHHHHHHH
T ss_pred CCcchhCChHHHHHHHHHcCC-CCCcCCCC----CcchhCCHHHHHHHHHH
Confidence 45543 345667888765322 44688987 99888887768888754
No 213
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=22.67 E-value=32 Score=26.29 Aligned_cols=13 Identities=31% Similarity=1.114 Sum_probs=11.6
Q ss_pred cccHhhHHHHHhc
Q psy7814 37 KFCAACIDSWIDV 49 (460)
Q Consensus 37 ~fC~~Ci~~~~~~ 49 (460)
.||+.|+.+|...
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999975
No 214
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=22.66 E-value=2.2e+02 Score=24.31 Aligned_cols=44 Identities=9% Similarity=0.050 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy7814 262 NSHLLKLVYERMVLLEQSMLEQKIKVNNFELNLKQTEEIEDNVV 305 (460)
Q Consensus 262 ~~~~~~~l~~~i~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~ 305 (460)
++++.+++-++|..|+.+.-.++..+....-.|++|...++++.
T Consensus 63 L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLr 106 (180)
T 1j1e_C 63 LQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHH
Confidence 45667788899999999988888888888888888877766664
No 215
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.29 E-value=46 Score=23.04 Aligned_cols=32 Identities=19% Similarity=0.500 Sum_probs=20.4
Q ss_pred cccccccccccccc-eecCCCCcccHhhHHHHH
Q psy7814 16 RFECSICLEYLKDA-ILTSCGHKFCAACIDSWI 47 (460)
Q Consensus 16 ~l~C~iC~~~l~~p-~~~~CgH~fC~~Ci~~~~ 47 (460)
-|.|..|...|... ....-|..||..|+.+.+
T Consensus 31 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 31 CFVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63 (70)
T ss_dssp TSBCSSSCCBCTTSCCEESSSSEECHHHHHHHT
T ss_pred CCccCCCCCcCCcCceEeeCCeEECHHHHHHHh
Confidence 46777777776542 234557778888876653
No 216
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=22.26 E-value=33 Score=26.17 Aligned_cols=13 Identities=31% Similarity=1.135 Sum_probs=11.5
Q ss_pred cccHhhHHHHHhc
Q psy7814 37 KFCAACIDSWIDV 49 (460)
Q Consensus 37 ~fC~~Ci~~~~~~ 49 (460)
.||+.|+.+|...
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999875
No 217
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=22.08 E-value=31 Score=23.66 Aligned_cols=29 Identities=17% Similarity=0.440 Sum_probs=14.2
Q ss_pred ccccccccccccc-eecCCCCcccHhhHHH
Q psy7814 17 FECSICLEYLKDA-ILTSCGHKFCAACIDS 45 (460)
Q Consensus 17 l~C~iC~~~l~~p-~~~~CgH~fC~~Ci~~ 45 (460)
|.|..|...|... ....-|..||..|+.+
T Consensus 32 F~C~~C~~~L~~~~~~~~~g~~yC~~~y~~ 61 (66)
T 1nyp_A 32 FVCAKCEKPFLGHRHYERKGLAYCETHYNQ 61 (66)
T ss_dssp CBCTTTCCBCSSSCCEEETTEEECHHHHHH
T ss_pred CEECCCCCCCCCCceEeECCcEECHHHHHH
Confidence 5555555555432 2234455556555544
No 218
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=21.98 E-value=1.7e+02 Score=18.97 Aligned_cols=11 Identities=9% Similarity=0.060 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q psy7814 269 VYERMVLLEQS 279 (460)
Q Consensus 269 l~~~i~~l~~~ 279 (460)
+...+..|+.+
T Consensus 10 Le~~ld~LqTr 20 (46)
T 3swy_A 10 LGSSLDTLQTR 20 (46)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 219
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=21.77 E-value=90 Score=21.52 Aligned_cols=45 Identities=16% Similarity=0.329 Sum_probs=31.5
Q ss_pred CCCccc-cccchhhhhhhcCCCCCccccccccccccccccchhHHHHHhhh
Q psy7814 136 RNSKIL-TVTVFPEHLNMQGSSNENFPCKFYQVGCREVFKSQALLEKHYDL 185 (460)
Q Consensus 136 ~c~~~~-~r~~l~~H~~~~c~~~~~v~Cp~~~~GC~~~~~r~~~l~~H~~~ 185 (460)
.|+... ....|..|+..-.. .....|++ |...+.+...|..|+..
T Consensus 23 ~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~----C~~~f~~~~~L~~H~~~ 68 (77)
T 2cot_A 23 ECGKSFSHSSDLSKHRRTHTG-EKPYKCDE----CGKAFIQRSHLIGHHRV 68 (77)
T ss_dssp SSCCBCSCHHHHHHHHTTTCC-SCSEECSS----SCCEESSHHHHHHHGGG
T ss_pred CCCcccCCHHHHHHHHHHcCC-CcCeeCCC----CCCccCCHHHHHHHHHH
Confidence 455443 46678889865432 34678887 99988887778888764
No 220
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=21.60 E-value=60 Score=22.86 Aligned_cols=31 Identities=29% Similarity=0.587 Sum_probs=22.7
Q ss_pred Cccccccccccccccee-cCC-CCcccHhhHHHHH
Q psy7814 15 PRFECSICLEYLKDAIL-TSC-GHKFCAACIDSWI 47 (460)
Q Consensus 15 ~~l~C~iC~~~l~~p~~-~~C-gH~fC~~Ci~~~~ 47 (460)
+.--|.||.+-.. +. ..| |-.||..|+.+.-
T Consensus 7 e~pWC~ICneDAt--lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 7 GLPWCCICNEDAT--LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCSSCTTTCSCCC--EEETTTTSEEECSSHHHHHT
T ss_pred CCCeeEEeCCCCe--EEecCCCCceehHHHHHHHc
Confidence 3456999987622 33 478 8999999999865
No 221
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=21.42 E-value=1.2e+02 Score=17.04 Aligned_cols=19 Identities=16% Similarity=0.163 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7814 279 SMLEQKIKVNNFELNLKQT 297 (460)
Q Consensus 279 ~~~~l~~~~~~l~~~l~~l 297 (460)
+...+++++..++++|..+
T Consensus 9 kcaalesklqalekkleal 27 (31)
T 3ljm_A 9 KCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433
No 222
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.36 E-value=52 Score=24.23 Aligned_cols=28 Identities=25% Similarity=0.661 Sum_probs=20.5
Q ss_pred cccccccccccc---ceec-CCCCcccHhhHH
Q psy7814 17 FECSICLEYLKD---AILT-SCGHKFCAACID 44 (460)
Q Consensus 17 l~C~iC~~~l~~---p~~~-~CgH~fC~~Ci~ 44 (460)
-.|.+|...|.- ..-. .||..||..|..
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 569999987642 2333 899999999943
No 223
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=20.78 E-value=1.1e+02 Score=22.06 Aligned_cols=31 Identities=23% Similarity=0.735 Sum_probs=23.8
Q ss_pred Cccccccccccc-cccee--cCCCCcccHhhHHH
Q psy7814 15 PRFECSICLEYL-KDAIL--TSCGHKFCAACIDS 45 (460)
Q Consensus 15 ~~l~C~iC~~~l-~~p~~--~~CgH~fC~~Ci~~ 45 (460)
....|.+|.... ..++. +.|.-.||..|+..
T Consensus 29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp CCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCccCCcCCCCCCCCCeeEccCccchhhhhhhHh
Confidence 367899998644 44443 58999999999986
No 224
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.72 E-value=39 Score=23.88 Aligned_cols=32 Identities=13% Similarity=0.197 Sum_probs=19.4
Q ss_pred cccccccccccc-c-ceecCCCCcccHhhHHHHH
Q psy7814 16 RFECSICLEYLK-D-AILTSCGHKFCAACIDSWI 47 (460)
Q Consensus 16 ~l~C~iC~~~l~-~-p~~~~CgH~fC~~Ci~~~~ 47 (460)
-|.|..|...|. . .....-|..||..|.....
T Consensus 31 CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~ 64 (73)
T 1wig_A 31 CALCVRCGQMFAEGEEMYLQGSSIWHPACRQAAR 64 (73)
T ss_dssp TSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTS
T ss_pred cCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhh
Confidence 367777777765 2 2233556677777776543
No 225
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=20.66 E-value=2.1e+02 Score=19.51 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy7814 269 VYERMVLLEQSMLEQKIKVNNFELNLKQTEEIEDNV 304 (460)
Q Consensus 269 l~~~i~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~ 304 (460)
-.+.+..|+.++..|......|...++.|......+
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888888888777654433
No 226
>3v0r_A Major allergen ALT A 1; beta-barrel, cell WALL, unknown function; HET: 0FU 8AC; 1.90A {Alternaria alternata}
Probab=20.51 E-value=6.3 Score=31.87 Aligned_cols=15 Identities=33% Similarity=0.844 Sum_probs=12.6
Q ss_pred cCcEEEEEECChHHH
Q psy7814 309 CNGVYFWKMYNFPAK 323 (460)
Q Consensus 309 ~~g~~~w~I~~fs~~ 323 (460)
..|-++|+|.+|+.+
T Consensus 10 ~~gd~vwkIs~F~~R 24 (133)
T 3v0r_A 10 TEGDYVWKISEFYGR 24 (133)
T ss_dssp CCCTTEEEEEEEEEE
T ss_pred cCCceEEEeeeeeeE
Confidence 457799999999976
No 227
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=20.17 E-value=72 Score=26.26 Aligned_cols=44 Identities=27% Similarity=0.493 Sum_probs=28.5
Q ss_pred ccccccccccccccee-cCCCCcccHhhHHHHHh---------cCCCCCCCCCcc
Q psy7814 16 RFECSICLEYLKDAIL-TSCGHKFCAACIDSWID---------VKGKNYCPIDEK 60 (460)
Q Consensus 16 ~l~C~iC~~~l~~p~~-~~CgH~fC~~Ci~~~~~---------~~~~~~CP~Cr~ 60 (460)
+..|.+|..-=. =+- -.|-..||..|+.+.+. ..+.-.||.|..
T Consensus 63 ~d~C~vC~~GG~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEGGN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCCSS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCCCc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 345888876332 111 27899999999996552 233345999974
No 228
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=20.11 E-value=2.5e+02 Score=20.11 Aligned_cols=18 Identities=33% Similarity=0.143 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy7814 266 LKLVYERMVLLEQSMLEQ 283 (460)
Q Consensus 266 ~~~l~~~i~~l~~~~~~l 283 (460)
+++++.+...|+.++..+
T Consensus 9 Lq~~E~~N~~Le~~v~~l 26 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEM 26 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHH
Confidence 344444444444443333
Done!