RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7814
(460 letters)
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling,
TRAF, adapter protein, cell surviVal; 2.30A {Homo
sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Length = 192
Score = 123 bits (309), Expect = 3e-33
Identities = 48/194 (24%), Positives = 90/194 (46%), Gaps = 9/194 (4%)
Query: 271 ERMVLLEQSMLEQKIKVNNFELNLKQTEEIEDNVVLKLCNGVYFWKMYNFPAKLKEMKE- 329
+++ L + + + + +L + E+ + +GV+ WK+ +F K +E
Sbjct: 3 DKIEALSSKVQQLERSIGLKDLAMADLEQKVLEMEASTYDGVFIWKISDFARKRQEAVAG 62
Query: 330 INRYFYSACFYSSCFGYRFCTRVNI---SREDAQYLSLFIHLVQGENDDILDWPFVGRIR 386
+S FY+S +GY+ C R+ + +LSLF +++G ND +L WPF ++
Sbjct: 63 RIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVT 122
Query: 387 FTALNTSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMED 446
L+ ++ + D + D SF+RPVN A G F V+ ++ ++ D
Sbjct: 123 LMLLDQNNREHVIDAFRPDVTSSSFQRPVND--MNIASGCPLFCPVSK-MEAKNSYV-RD 178
Query: 447 DTFVIKTQVTEMTH 460
D IK V ++T
Sbjct: 179 DAIFIKAIV-DLTG 191
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF
receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB:
1kzz_A 1l0a_A 1zms_A 1rf3_A
Length = 192
Score = 122 bits (308), Expect = 5e-33
Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 12/194 (6%)
Query: 274 VLLEQSMLEQKIKVNNFELNLKQTEEIEDNVVLKLCNGVYFWKMYNFPAKLKEMKE-INR 332
LLE + ++ ++ L + + NGV WK+ ++ + +E
Sbjct: 3 GLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTL 62
Query: 333 YFYSACFYSSCFGYRFCTRVNI---SREDAQYLSLFIHLVQGENDDILDWPFVGRIRFTA 389
YS FY+ FGY+ C RV + +LSLF +++GE D +L WPF ++
Sbjct: 63 SLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLML 122
Query: 390 LN-TSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDT 448
++ SS + D + D N SFK+P A G F+ + + ++ +DDT
Sbjct: 123 MDQGSSRRHLGDAFKPDPNSSSFKKPTGE--MNIASGCPVFVAQTVLEN--GTYI-KDDT 177
Query: 449 FVIKTQV--TEMTH 460
IK V +++
Sbjct: 178 IFIKVIVDTSDLPD 191
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3,
CD40-binding protein, apoptosis; 2.80A {Homo sapiens}
SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Length = 228
Score = 120 bits (302), Expect = 9e-32
Identities = 50/205 (24%), Positives = 86/205 (41%), Gaps = 12/205 (5%)
Query: 263 SHLLKLVYERMVLLEQSMLEQKIKVNNFELNLKQTEEIEDNVVLKLCNGVYFWKMYNFPA 322
V LLE + ++ ++ L + + NGV WK+ ++
Sbjct: 28 DKSAGQVARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKR 87
Query: 323 KLKEMKE-INRYFYSACFYSSCFGYRFCTRVNI---SREDAQYLSLFIHLVQGENDDILD 378
+ +E YS FY+ FGY+ C RV + +LSLF +++GE D +L
Sbjct: 88 RKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLP 147
Query: 379 WPFVGRIRFTALN-TSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLD 437
WPF ++ ++ SS + D + D N SFK+P A G F+ + +
Sbjct: 148 WPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGE--MNIASGCPVFVAQTVLEN 205
Query: 438 PGRGFLMEDDTFVIKTQV--TEMTH 460
++ +DDT IK V +++
Sbjct: 206 --GTYI-KDDTIFIKVIVDTSDLPD 227
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling
protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A
1lb4_A
Length = 160
Score = 115 bits (289), Expect = 9e-31
Identities = 51/156 (32%), Positives = 83/156 (53%), Gaps = 12/156 (7%)
Query: 309 CNGVYFWKMYNFPAKLKEMKE-INRYFYSACFYSSCFGYRFCTRVNI----SREDAQYLS 363
CNG+Y WK+ NF LK +E +S FY+ GY+ C R+++ ++ A Y+S
Sbjct: 3 CNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYIS 62
Query: 364 LFIHLVQGENDDILDWPFVGRIRFTALN---TSSEFSITDEIQSDKNFDSFKRPVNFFLN 420
LF+H +QGE D L WPF G IR T L+ + + + + +F+RP N
Sbjct: 63 LFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTI-PRN 121
Query: 421 KKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVT 456
K FG+ F+ + + R F+ +DDT +++ +V+
Sbjct: 122 PKGFGYVTFMHLEALRQ--RTFI-KDDTLLVRCEVS 154
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich,
protein-peptide complex, apoptosis; 2.00A {Homo sapiens}
SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A
1d01_A 1d0a_A
Length = 168
Score = 112 bits (280), Expect = 2e-29
Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 9/156 (5%)
Query: 309 CNGVYFWKMYNFPAKLKEMKE-INRYFYSACFYSSCFGYRFCTRVNI---SREDAQYLSL 364
+GV+ WK+ +F K +E +S FY+S +GY+ C R+ + +LSL
Sbjct: 17 YDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSL 76
Query: 365 FIHLVQGENDDILDWPFVGRIRFTALNTSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAF 424
F +++G ND +L WPF ++ L+ ++ + D + D SF+RPVN A
Sbjct: 77 FFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVND--MNIAS 134
Query: 425 GFNNFIRVADVLDPGRGFLMEDDTFVIKTQVTEMTH 460
G F V+ ++ ++ DD IK V ++T
Sbjct: 135 GCPLFCPVSK-MEAKNSYV-RDDAIFIKAIV-DLTG 167
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.10A {Homo sapiens} PDB:
3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 96.4 bits (240), Expect = 3e-24
Identities = 36/93 (38%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 13 LDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNY 72
L+ ++EC ICL L++A+ T CGH+FC ACI I G CP+D ++L ++ +F DN+
Sbjct: 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGH-KCPVDNEILLENQLFPDNF 73
Query: 73 TRREILENNLTCPYKQCSSQLSIPEYESHVNTC 105
+REIL + CP + C ++ + E H C
Sbjct: 74 AKREILSLMVKCPNEGCLHKMELRHLEDHQAHC 106
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 82.7 bits (204), Expect = 2e-19
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 12 NLDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDN 71
+ C IC L D + TSC H FC CI + V G YCP D+
Sbjct: 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGS-YCPSCRYPCFPTDLESPV 77
Query: 72 YTRREILEN-NLTCPYKQCSSQLSIPEYESHVNTC 105
+ IL + + CP + C+ ++S+ +Y HV++
Sbjct: 78 KSFLNILNSLMVKCPAQDCNEEVSLEKYNHHVSSH 112
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 84.0 bits (207), Expect = 3e-19
Identities = 36/93 (38%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 13 LDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNY 72
L+ ++EC ICL L++A+ T CGH+FC ACI I G + CP+D ++L ++ +F DN+
Sbjct: 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG-HKCPVDNEILLENQLFPDNF 73
Query: 73 TRREILENNLTCPYKQCSSQLSIPEYESHVNTC 105
+REIL + CP + C ++ + E H C
Sbjct: 74 AKREILSLMVKCPNEGCLHKMELRHLEDHQAHC 106
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 80.9 bits (199), Expect = 2e-18
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 11/103 (10%)
Query: 13 LDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPI---------DEKVLT 63
L+ ++ CS C L+ CGH++C+ C+ S + + C +L
Sbjct: 28 LEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQ-NCAACVHEGIYEEGISILE 86
Query: 64 KDDIFIDNYTRREILENNLTCPYKQCSSQLSIPEYES-HVNTC 105
F DN RRE+ CP C+ + ++ EYES H C
Sbjct: 87 SSSAFPDNAARREVESLPAVCPSDGCTWKGTLKEYESCHEGRC 129
>2ecy_A TNF receptor-associated factor 3; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 71.7 bits (176), Expect = 4e-16
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 13 LDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIF 68
++ +++C C L T CGH+FC +C+ + + C ++ + KD +F
Sbjct: 12 VEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSP-KCTACQESIVKDKVF 66
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 67.9 bits (166), Expect = 2e-14
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 5 PVANNKLNLDPRFECSICLEYLKDAILTS-CGHKFCAACIDSWIDVKGKNYCPIDEKVLT 63
P+ + + C IC + + DA++ CG+ +C CI + + ++ CP +
Sbjct: 2 PLGSEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61
Query: 64 KDDIFIDNYTRREILEN 80
D I N R+ + N
Sbjct: 62 SPDALIANKFLRQAVNN 78
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 67.2 bits (164), Expect = 4e-14
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 2 EHQPVANNKL-NLDPRFECSICLEYLKDA-ILTSCGHKFCAACIDSWIDVKGKNYCPIDE 59
H + + ++ F C IC+E L+DA + C C +CI W+ + + CP
Sbjct: 7 HHSHMDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLT-EQRAQCPHCR 65
Query: 60 KVLTKDDIFIDNYTRREILEN 80
L ++ ++ E+ +
Sbjct: 66 APLQLREL-VNCRWAEEVTQQ 85
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 64.0 bits (156), Expect = 2e-13
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 12 NLDPRFECSICLEYLKDAI-LTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDD 66
L P CSIC YL DA +T C H FC +CI N CP V+ +
Sbjct: 11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY--SNRCPKCNIVVHQTQ 64
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 64.4 bits (157), Expect = 4e-13
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 12 NLDPRFECSICLEYLKDA-ILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFID 70
+D C IC EY A I+ C H +C+ CI ++ K + CP +T+ D+
Sbjct: 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQ--CPTCCVTVTEPDLKN- 74
Query: 71 NYTRREILEN 80
N E++++
Sbjct: 75 NRILDELVKS 84
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 60.2 bits (146), Expect = 5e-12
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 7 ANNKLNLDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDD 66
+ N EC+ICL+ + C H FC C+ + + C + + + +D
Sbjct: 6 SGNTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKR--CALCRQEIPEDF 63
Query: 67 I 67
+
Sbjct: 64 L 64
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation
pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A
3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Length = 145
Score = 62.3 bits (151), Expect = 6e-12
Identities = 37/156 (23%), Positives = 59/156 (37%), Gaps = 23/156 (14%)
Query: 305 VLKLCNGVYFWKMYNFPAKLKEMKEINRYFYSACFYS-SCFGYRFCTRV---NISREDAQ 360
K+ Y W + NF +E+ S+ F S + ++C RV + E
Sbjct: 5 SGKVVKFSYMWTINNFSFC---REEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKD 61
Query: 361 YLSLFIHLVQGENDDILDWPFVGRIRFTALNTSSEFSITDEIQSDKNFDSFKRPVNFFLN 420
YLSL++ LV + +F+ LN E + + F+
Sbjct: 62 YLSLYLLLVSCPK-----SEVRAKFKFSILNAKGE----------ETKAMESQRAYRFVQ 106
Query: 421 KKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVT 456
K +GF FIR +LD G L DD + +V+
Sbjct: 107 GKDWGFKKFIRRDFLLDEANGLL-PDDKLTLFCEVS 141
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 59.8 bits (145), Expect = 7e-12
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 13 LDPRFECSICLEYLKDAILTS-CGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDD 66
+ C IC + + DA++ CG+ +C CI + + ++ CP + D
Sbjct: 12 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 61.0 bits (148), Expect = 7e-12
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 3 HQPVANNKLNLDPRFECSICLEYLKDA-ILTSCGHKFCAACIDSWIDVKGKNYCPIDEKV 61
H+ L+P C +C Y DA + C H FC CI +++ YCPI +
Sbjct: 2 HRTTRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET--SKYCPICDVQ 59
Query: 62 LTKDDIFIDNYTRREILEN 80
+ K + N + L++
Sbjct: 60 VHKTR-PLLNIRSDKTLQD 77
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase,
nuclear protein, chromosomal protein, transcription
regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Length = 165
Score = 62.3 bits (151), Expect = 9e-12
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 12 NLDPRFECSICLEYLKDAILTS-CGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFID 70
+L C ICL+ LK+ + T C H+FCA CI + + G CP K L
Sbjct: 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALR-SGNKECPTCRKKLVSKRSLRP 108
Query: 71 NYTRREILE 79
+ ++
Sbjct: 109 DPNFDALIS 117
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 60.8 bits (147), Expect = 1e-11
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Query: 13 LDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNY 72
++ F+C C E + I T C H C C+D CP L + N
Sbjct: 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFR-AQVFSCPACRYDLGRSYAMQVNQ 107
Query: 73 TRREILENNL 82
+ +L
Sbjct: 108 PLQTVLNQLF 117
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 61.2 bits (148), Expect = 2e-11
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 17 FECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNYTRRE 76
F C C E + + T C H C C+ + CP L ++ I I N +
Sbjct: 79 FMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVF-SCPACRHDLGQNYIMIPNEILQT 137
Query: 77 ILE 79
+L+
Sbjct: 138 LLD 140
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 58.1 bits (141), Expect = 3e-11
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 17 FECSICLEYLKDAILTSCGHKFCAACI-DSWIDVKGKNYCP 56
C ICL+ L+ + CGH FC CI G CP
Sbjct: 21 VICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCP 61
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 58
Score = 57.7 bits (140), Expect = 3e-11
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 17 FECSICLEYLKDAILTSCGHKFCAACI-DSWIDVKGKNYCP 56
CS+CLEYLK+ ++ CGH FC ACI W D++ CP
Sbjct: 16 ASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCP 56
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 58.6 bits (142), Expect = 5e-11
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 17 FECSICLEYLKDAILTSCGHKFCAACI-DSWIDVKGKNYCP 56
EC ICLE +K+ + T C H FC C+ KG + CP
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCP 62
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 57.5 bits (139), Expect = 6e-11
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 14 DPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPI 57
+ F C IC + ++ ++T C H FC +C + C I
Sbjct: 13 EIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPR--CYI 54
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 57.2 bits (138), Expect = 6e-11
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 9/62 (14%)
Query: 14 DPRFECSICLEYLKD-------AILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDD 66
C IC++ + + T CGH FC+ C+ + K N CP K +
Sbjct: 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL--KNANTCPTCRKKINHKR 65
Query: 67 IF 68
Sbjct: 66 YH 67
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 56.6 bits (137), Expect = 8e-11
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 17 FECSICLEYLKDAILTSCGHKFCAACI-DSWIDVKGKNYCP 56
C ICL+ L+ + CGH FC CI G CP
Sbjct: 21 VICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCP 61
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 56.7 bits (137), Expect = 8e-11
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 9/60 (15%)
Query: 16 RFECSICLEYLKD-------AILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIF 68
C IC++ + + T CGH FC+ C+ + K N CP K +
Sbjct: 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL--KNANTCPTCRKKINHKRYH 60
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 61.3 bits (148), Expect = 2e-10
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 17 FECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPID-EKVLTKDDIFIDNY 72
C IC E KD + CGH C +C+ SW + CP ++ + I +D +
Sbjct: 333 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQE-SEGQGCPFCRCEIKGTEPIVVDPF 388
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 58.1 bits (140), Expect = 2e-10
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 2 EHQPVANNKLNLDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPI 57
+ + +++ L+ +C IC EY +A+ +C H FC+ CI+ W+ K K CPI
Sbjct: 50 KEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWM--KRKIECPI 103
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 56.5 bits (136), Expect = 4e-10
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 17 FECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPI 57
+C IC+E L + + C H C C S ++ K CP
Sbjct: 16 CQCGICMEILVEPVTLPCNHTLCKPCFQSTVE-KASLCCPF 55
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain,
tripartite motif protein 34, interferon- responsive
finger protein 1; NMR {Homo sapiens}
Length = 79
Score = 55.0 bits (133), Expect = 5e-10
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 19 CSICLEYLKDAILTSCGHKFCAACI-----DSWIDVKGKNYCP 56
C ICLE L + + CGH C ACI ++ + GK+ CP
Sbjct: 15 CPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCP 57
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 54.7 bits (132), Expect = 7e-10
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 17 FECSICLEYLKDAILTSCGHKFCAACI----DSWIDVKGKNYCP 56
C ICLE LK+ + C H FC ACI +S + GK CP
Sbjct: 20 VTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCP 63
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 53.8 bits (129), Expect = 1e-09
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
Query: 11 LNLDPRFECSICLEYLKD-------AILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLT 63
L C IC++ + + T CGH FC+ C+ + K N CP K +
Sbjct: 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL--KNANTCPTCRKKIN 67
Query: 64 K 64
Sbjct: 68 H 68
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase;
1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A
3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Length = 155
Score = 56.0 bits (135), Expect = 1e-09
Identities = 26/165 (15%), Positives = 52/165 (31%), Gaps = 28/165 (16%)
Query: 297 TEEIEDNVVLKLCNGVYFWKMYNFPAKLKEMKEINRYFYSACFYSSCFGYRFCTRV---- 352
EE ++ + + + F ++ S + + V
Sbjct: 5 AEEDMEDDTSWRSEATFQFTVERF-------SRLSESVLSPPCF--VRNLPWKIMVMPRF 55
Query: 353 NISREDAQYLSLFIHLVQGENDDILDWPFVGRIRFTALNTSSEFSITDEIQSDKNFDSFK 412
R + + F+ D W + +N D +
Sbjct: 56 YPDRPHQKSVGFFLQCN--AESDSTSWSCHAQAVLKIIN-----------YRDDEKSFSR 102
Query: 413 RPVN-FFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVT 456
R + FF + +GF+NF+ ++V DP +GF+ +DD + V
Sbjct: 103 RISHLFFHKENDWGFSNFMAWSEVTDPEKGFI-DDDKVTFEVFVQ 146
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 53.6 bits (129), Expect = 1e-09
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 18 ECSICLEYLKD-AILTSCGHKFCAACIDSWIDVKGKNYCPI 57
C ICLE + ++ C H FC CI WI CP+
Sbjct: 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ--NPTCPL 45
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 53.0 bits (128), Expect = 3e-09
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 19 CSICLEYLKDAILTSCGHKFCAACI-DSW---IDVKGKNYCP 56
C ICLE L + CGH FC AC+ + + KG++ CP
Sbjct: 22 CPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCP 63
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 53.2 bits (127), Expect = 7e-09
Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 9/86 (10%)
Query: 14 DPRFECSICLEYLKDAIL-------TSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDD 66
C IC++ + + T CGH FC+ C+ + CP K +
Sbjct: 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT--CPTCRKKINHKR 62
Query: 67 IFIDNYTRREILENNLTCPYKQCSSQ 92
+ Y +
Sbjct: 63 YHPIYIGSGTVSCPICMDGYSEIVQN 88
Score = 35.1 bits (80), Expect = 0.012
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 9/61 (14%)
Query: 14 DPRFECSICLEYLKDAIL-------TSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDD 66
C IC++ + + T CGH FC+ C+ + N CP K +
Sbjct: 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK--NANTCPTCRKKINHKR 127
Query: 67 I 67
Sbjct: 128 Y 128
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 50.9 bits (122), Expect = 1e-08
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 18 ECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPI 57
EC IC++ D IL C H FC CID W D CPI
Sbjct: 17 ECCICMDGRADLIL-PCAHSFCQKCIDKWSDRHRN--CPI 53
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 51.4 bits (123), Expect = 2e-08
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 12 NLDPRFECSICLEYLKDAI-LTSCGHKFCAACIDSWIDVKGKNYCPI 57
L+ CS C L++ + L C H FC+ C+ I CP+
Sbjct: 18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTG----CPV 60
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring,
ATP-binding, chromosomal protein, coiled coil, DNA
damage; 2.31A {Saccharomyces cerevisiae}
Length = 267
Score = 53.8 bits (128), Expect = 3e-08
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
Query: 17 FECSICLEYLKD-AILTSCGHKFCAACIDSWIDVKGKNYCPID--EKVLTKDDIFIDNYT 73
C I + + I C H F I +++ CP +V++ D D
Sbjct: 182 LTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIM 241
Query: 74 RREI 77
Sbjct: 242 ELRC 245
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.3 bits (127), Expect = 1e-07
Identities = 57/453 (12%), Positives = 129/453 (28%), Gaps = 122/453 (26%)
Query: 61 VLTK---DDIFI----DNYTRR--EILENNLTCPYKQCSSQLSIPEYESHVNTCYLKYSQ 111
+L+K D I + + T R L + ++ ++ Y+ ++ + Q
Sbjct: 45 ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104
Query: 112 PSVEDITDSPTSSFRNTSGIPTNKRN-SKILTVTVFPEHLN------------MQGS--- 155
PS+ K N S++ + L + GS
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 156 -------SNE----NFPCKFYQVGCREVFKSQALLEKHYDLKTSFHLELLFNKYCSDGSQ 204
+ K + + + + +LE L+ L + + +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE---------MLQKLLYQIDPNWTS 215
Query: 205 STNTPSHGRQDTSNQKEIEAYLMKNKEHESKL------WDPNKNQAGDDKSSEGDCSCKT 258
++ S+ + + + L+K+K +E+ L + A + SCK
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA-------FNLSCKI 268
Query: 259 -------------CGDNSHLLKLVYERMVLLEQSMLEQKIKVNNFELNLKQT---EEIED 302
+ + L + M L + +K L+ + E+
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY----LDCRPQDLPREVLT 324
Query: 303 N--VVLKLC-----NGVY---FWKMYNFPAKLKEMK---------EINRYFYS-ACFYSS 342
L + +G+ WK N ++ E + F + F S
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 343 CFGYRFCTRVNISREDAQYLSLF-IHLVQGENDDILD----------WPFVGRIRFTALN 391
+I LSL +++ + +++ P I ++
Sbjct: 385 ---------AHIP---TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 392 TSSEFSITDEIQSDKNF-DSFKRPVNFFLNKKA 423
+ + +E ++ D + P F +
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Score = 37.1 bits (85), Expect = 0.013
Identities = 66/475 (13%), Positives = 127/475 (26%), Gaps = 163/475 (34%)
Query: 3 HQPVANNKLNLDPRFECSICLEYLKDA---ILTSCGHKFCAACIDSWIDVKGKNY----- 54
+Q N D + + ++ +L S ++ C + +V+
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL---NVQNAKAWNAFN 263
Query: 55 --CPIDEKVLTKDDIFID-----------------NYTRRE---ILENNLTCPYKQCSSQ 92
C I + T+ D T E +L L C + +
Sbjct: 264 LSCKI--LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 93 --------LS-IPE-YESHVNTCYLKYSQPSVEDITDSPTSSFRNTSGIPTNKRNS-KIL 141
LS I E + T + + + + +T SS P R L
Sbjct: 322 VLTTNPRRLSIIAESIRDGLAT-WDNWKHVNCDKLTTIIESSLNVLE--PAEYRKMFDRL 378
Query: 142 TVTVFPEHLNMQGSSNENFPCKFYQV--------GCREV---FKSQALLEKHYDLKT-SF 189
+V FP + + P + V +L+EK T S
Sbjct: 379 SV--FPP--------SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 190 H-LELLFNKYCSDGSQSTNTPSHGRQDTSNQKEIEAYLMKNKEHESKLWDPNKNQAGDDK 248
+ L + + ++ ++ Y + +D +
Sbjct: 429 PSIYLELKVKLEN------------EYALHRSIVDHYNIPKT------FDSD-------- 462
Query: 249 SSEGDCSCKTCGDN-------SHLLKLVYE------RMVLLEQSMLEQKIKVNNFELNLK 295
D D HL + + RMV L+ LEQKI+ ++ N
Sbjct: 463 ----DLI-PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 296 QTEEIEDNVVLKLCNGVYFWKMYNFPAKLKEMKEINRYFYSACFYSSCFGYRFCTRVNIS 355
+ +L + F+K Y I
Sbjct: 518 GS-------ILNTLQQLKFYKPY-----------------------------------IC 535
Query: 356 REDAQY---LSLFIHLVQGENDDILDWPFVGRIRFTALNTSSEFSITD-EIQSDK 406
D +Y ++ + + ++++ + +R AL E + Q +
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI-ALMAEDEAIFEEAHKQVQR 589
Score = 30.6 bits (68), Expect = 1.2
Identities = 19/99 (19%), Positives = 27/99 (27%), Gaps = 18/99 (18%)
Query: 353 NISREDAQYLSLFIHLVQG-----ENDDILDWPFVGRIRFTALNTSSEFSITDEI-QSDK 406
QY + + D+ D P + + E D I S
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMP---KSILS----KEEI---DHIIMSKD 59
Query: 407 NFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLME 445
R L+K+ F V +VL FLM
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKF--VEEVLRINYKFLMS 96
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 46.6 bits (111), Expect = 2e-07
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 5/40 (12%)
Query: 18 ECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPI 57
C C K L C H C+ C++ CPI
Sbjct: 8 RCQQCQAEAKCPKLLPCLHTLCSGCLE-----ASGMQCPI 42
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 46.5 bits (111), Expect = 3e-07
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 18 ECSICLEYLKD----AILTSCGHKFCAACIDSWIDVKGKNYCPI 57
C ICLE + A + CGH C + + K CP+
Sbjct: 7 GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEML--KEGYRCPL 48
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 47.0 bits (112), Expect = 3e-07
Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 7/77 (9%)
Query: 12 NLDPRFECSICLEYLKDA----ILTSCGHKFCAACIDSWIDVKGKNY-CPIDEKVLTKDD 66
L EC IC+E + L CGH C C++ + CP K+
Sbjct: 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70
Query: 67 I--FIDNYTRREILENN 81
+ DN T + ++
Sbjct: 71 LTQLTDNLTVLKSGPSS 87
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 44.1 bits (104), Expect = 2e-06
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 14 DPRFECSICLEYL-KDAILTSCGHKFCAACIDSWIDVKGKNYCPI 57
D C+IC L + +CG + C+ + + CP
Sbjct: 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPH 57
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 43.8 bits (103), Expect = 6e-06
Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 17 FECSICLEYLKD-AILTSCGHKFCAACIDSWID----VKGKNYCPI---DEKVLTKDDIF 68
F C I E +K CGH + I I+ K K YCP + K D+
Sbjct: 8 FTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLI 67
Query: 69 IDNYTRREI 77
D RR I
Sbjct: 68 QDEALRRAI 76
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 7e-06
Identities = 44/309 (14%), Positives = 86/309 (27%), Gaps = 111/309 (35%)
Query: 182 HYDLKTSFHLELLFNKYCSDGSQSTNTPSHGRQDTSNQKEIEAYLMKNKEHESKLWDPNK 241
H L+ + T + Q +E + L +P +
Sbjct: 13 HGSLEHVLLV-------------PTASFFIASQ----LQE---------QFNKILPEPTE 46
Query: 242 NQAGDDK-SSEGD------------CSCKTCGDNSHLLKLVYERMVLLEQSMLEQKIKVN 288
A DD+ ++ + G +L L +
Sbjct: 47 GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC-----------------LT 89
Query: 289 NFELNLKQTEEIEDNVVLKLCNGVYFWKMYNFPAKLKEMKEINRYFYSACFYSSCFGYRF 348
FE + +I + KL L + KE+ + + +A + R
Sbjct: 90 EFENCYLEGNDIHA-LAAKLLQ--------ENDTTLVKTKELIKNYITARIMAK----RP 136
Query: 349 CTRVNIS-------REDAQYLSLFIHLV--QGENDDILD---------WPFVGR-IRFTA 389
+ + S +AQ +++F QG DD + VG I+F+A
Sbjct: 137 FDKKSNSALFRAVGEGNAQLVAIF----GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSA 192
Query: 390 --LNTSSEFSITDEIQSDKNFDSFK-------RPVNFFLNKKAFGFN--------NFIRV 432
L+ ++ E + + + P +L +++
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT 252
Query: 433 ADVL--DPG 439
A +L PG
Sbjct: 253 AKLLGFTPG 261
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3
ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2
PDB: 1n87_A
Length = 61
Score = 42.0 bits (99), Expect = 1e-05
Identities = 9/50 (18%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 19 CSICLEYLKDAILT-SCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDI 67
C+I + + +L+ F + ++ ++ G PI + L+ ++I
Sbjct: 6 CAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGN--DPITNEPLSIEEI 53
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 42.1 bits (99), Expect = 1e-05
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 18 ECSICLEYLKD---AILTSCGHKFCAACIDSWIDVKGKNYCPI 57
C++CLE K + C H F C+ W++V+ CP+
Sbjct: 17 LCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKV--CPL 57
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin
ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana}
SCOP: g.44.1.2
Length = 78
Score = 41.8 bits (99), Expect = 2e-05
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 17 FECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNYT-RR 75
F C I LE +KD ++ S G + + I W+D G CP ++ L NY +
Sbjct: 9 FRCPISLELMKDPVIVSTGQTYERSSIQKWLD-AGHKTCPKSQETLL-HAGLTPNYVLKS 66
Query: 76 EILE 79
I
Sbjct: 67 LIAL 70
>2ect_A Ring finger protein 126; metal binding protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 78
Score = 41.6 bits (98), Expect = 2e-05
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 18 ECSICLEYLKD---AILTSCGHKFCAACIDSWIDVKGKNYCPI 57
EC +C E C H F +CI W+ + + CP+
Sbjct: 17 ECPVCKEDYALGESVRQLPCNHLFHDSCIVPWL--EQHDSCPV 57
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: g.44.1.1
Length = 114
Score = 42.5 bits (99), Expect = 3e-05
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 21/76 (27%)
Query: 10 KLNLDPRFECSICLEYLKDAI------------------LTSCGHKFCAACIDSWIDVKG 51
+L + P +C IC+E L A LT C H F C+ +
Sbjct: 19 ELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN 78
Query: 52 KNY---CPIDEKVLTK 64
K+ CP + + +
Sbjct: 79 KDGSLQCPSCKTIYGE 94
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.44.1.3
Length = 93
Score = 41.7 bits (97), Expect = 3e-05
Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 7/81 (8%)
Query: 4 QPVANNKLNLDPRFECSICLEYLKDAILTSC----GHKFCAACIDSWIDVKGKN---YCP 56
+ + + C+IC E L+D C HKFC C I +G YCP
Sbjct: 3 SGSSGSPMANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCP 62
Query: 57 IDEKVLTKDDIFIDNYTRREI 77
EK + + EI
Sbjct: 63 SGEKCPLVGSNVPWAFMQGEI 83
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR
{Oryza sativa} SCOP: g.44.1.1
Length = 55
Score = 39.9 bits (94), Expect = 4e-05
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 18 ECSICLEYLKDA----ILTSCGHKFCAACIDSW 46
EC++CL L+D L CGH F A C+D W
Sbjct: 7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMW 39
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 43.7 bits (103), Expect = 6e-05
Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 23/155 (14%)
Query: 310 NGVYFWKMYNFPAKLKEMKEINRYFYSACFYS-SCFGYRFCTRVN---ISREDAQYLSLF 365
Y W + NF + +E + S+ F S + ++C RVN + E YLSL+
Sbjct: 6 KFSYMWTINNF-SFCREE--MGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLY 62
Query: 366 IHLVQGENDDILDWPFVGRIRFTALNTSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAFG 425
+ LV ++ R +F +FSI + + ++ + F+ K +G
Sbjct: 63 LLLVSCPKSEV-------RAKF-------KFSILNA-KGEETKAMESQRAYRFVQGKDWG 107
Query: 426 FNNFIRVADVLDPGRGFLMEDDTFVIKTQVTEMTH 460
F FIR +LD G L DD + +V+ +
Sbjct: 108 FKKFIRRGFLLDEANGLL-PDDKLTLFCEVSVVQD 141
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG,
structural genomics, PSI-2, protein struc initiative;
NMR {Homo sapiens}
Length = 91
Score = 39.2 bits (92), Expect = 2e-04
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 18 ECSICL-EYLKDAILTS--CGHKFCAACIDSWIDVKGKNYCPI 57
C IC EY+K + T C H F C+ W+ + CP+
Sbjct: 42 CCPICCSEYVKGDVATELPCHHYFHKPCVSIWL--QKSGTCPV 82
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein
4, UIP4, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.44.1.1
Length = 94
Score = 39.5 bits (92), Expect = 2e-04
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 26/86 (30%)
Query: 17 FECSICLEYLKDA---ILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNYT 73
C +CL + C FC C+ ++++
Sbjct: 6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELL----------------------- 42
Query: 74 RREILENNLTCPYKQCSSQLSIPEYE 99
+E LE ++CP C Q + E E
Sbjct: 43 IKEGLETAISCPDAACPKQGHLQENE 68
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase,
UBL conjugation pathway; NMR {Mus musculus}
Length = 85
Score = 38.5 bits (90), Expect = 3e-04
Identities = 8/64 (12%), Positives = 20/64 (31%), Gaps = 4/64 (6%)
Query: 17 FECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNYT-RR 75
F + + D + G + I + P + ++LT+ + +
Sbjct: 15 FRDPLMDTLMTDPVRLPSGTVMDRSIILRHL--LNSPTDPFNRQMLTESML-EPVPELKE 71
Query: 76 EILE 79
+I
Sbjct: 72 QIQA 75
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4),
metal binding protein; NMR {Homo sapiens} SCOP:
g.44.1.1
Length = 65
Score = 37.2 bits (86), Expect = 6e-04
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Query: 17 FECSICL--EYLK---DAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDI 67
C C +Y ++ CGH C +C+D V+G CP L K +
Sbjct: 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLF-VRGAGNCPECGTPLRKSNF 58
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 75
Score = 37.3 bits (87), Expect = 7e-04
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 18 ECSICL-EYLKDAILTS--CGHKFCAACIDSWIDVKGKNYCPI 57
C +C+ ++ +L C H+F A C+D W+ K CPI
Sbjct: 25 LCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWL--KANRTCPI 65
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin
ligase, E4 polyubiquitin chain EL factor,
phosphoprotein, UBL conjugation pathway; NMR {Homo
sapiens} PDB: 3l1x_A 3l1z_B
Length = 100
Score = 37.8 bits (88), Expect = 8e-04
Identities = 8/64 (12%), Positives = 19/64 (29%), Gaps = 4/64 (6%)
Query: 17 FECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNYT-RR 75
F + + D + G + I + P + + LT+ + +
Sbjct: 30 FRDPLMDTLMTDPVRLPSGTIMDRSIILRHL--LNSPTDPFNRQTLTESML-EPVPELKE 86
Query: 76 EILE 79
+I
Sbjct: 87 QIQA 90
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 37.2 bits (86), Expect = 0.001
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 6/44 (13%)
Query: 19 CSICLEYLKDA----ILTSCGHKFCAACIDSWIDVKGKNYCPID 58
C C K + C H F C+ W+ K N CP+
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWV--KQNNRCPLC 70
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase,
Zn binding domain, metal zinc, zinc-finger, metal
binding protein; NMR {Homo sapiens}
Length = 69
Score = 36.2 bits (84), Expect = 0.001
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 18 ECSICLEYLKDA----ILTSCGHKFCAACIDSWIDVKGKNYCPI 57
+C+ICL L++ L C H F C+D W+ K CPI
Sbjct: 16 KCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKK--CPI 56
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A
{Danio rerio} PDB: 2c2v_S 2oxq_C
Length = 179
Score = 37.7 bits (87), Expect = 0.003
Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 17 FECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNYT-RR 75
I E +++ +T G + I+ + + ++ P+ LT+D + I N +
Sbjct: 107 LCGKISFELMREPCITPSGITYDRKDIEEHLQ-RVGHFDPVTRSPLTQDQL-IPNLAMKE 164
Query: 76 EILE 79
I
Sbjct: 165 VIDA 168
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 34.3 bits (78), Expect = 0.009
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 18 ECSICLEYL----KDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDI 67
EC +C+E L + +CG++ C C CP K +D
Sbjct: 13 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRT-DENGLCPACRKPYPEDPA 65
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 36.6 bits (84), Expect = 0.010
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 14 DPRFECSICLEYLKDAIL-TSCGHKFCAACIDSWIDVKGKNYCPI 57
D C+IC L +CG + C+ + + CP
Sbjct: 178 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPH 222
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 34.0 bits (77), Expect = 0.017
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 12/100 (12%)
Query: 19 CSIC-LEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNYTRREI 77
C C L + C H FC C + KG CP + + +
Sbjct: 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILH-EKKGDKMCPGCSDPVQR--------IEQCT 54
Query: 78 LENNLTCPYKQCSSQ--LSIPEYESHVNTCYLKYSQPSVE 115
+ C Q + LS + ++H+N +++ +P
Sbjct: 55 RGSLFMCSIVQGCKRTYLSQRDLQAHINHRHMRAGKPVTR 94
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 36.0 bits (82), Expect = 0.023
Identities = 15/93 (16%), Positives = 25/93 (26%), Gaps = 30/93 (32%)
Query: 12 NLDPRFECSICLEYLKDA--------ILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLT 63
+ C+IC Y D C K A C++ W
Sbjct: 304 EDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMD----------- 352
Query: 64 KDDIFIDNYTRREILENNLTCPYKQCSSQLSIP 96
+ + + CP+ C ++LS
Sbjct: 353 ---------GKTFLEVSFGQCPF--CKAKLSTS 374
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 34.9 bits (80), Expect = 0.037
Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 17 FECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNYTRRE 76
I E +++ +T G + I+ + + ++ P+ LT++ + I N +E
Sbjct: 209 LCGKISFELMREPCITPSGITYDRKDIEEHLQ-RVGHFNPVTRSPLTQEQL-IPNLAMKE 266
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative
splicing, HOST-virus interaction, UBL conjugation
pathway, zinc-finger, polymorphism; HET: FLC; 2.20A
{Homo sapiens} PDB: 2vjf_B*
Length = 63
Score = 31.7 bits (72), Expect = 0.047
Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 14 DPRFECSICLEYLKDA--ILTSCGHKF-CAACIDSWIDVKGKNYCPI 57
+ CS+C + +D I GH C C K CPI
Sbjct: 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRL--KKAGASCPI 49
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene,
phosphorylation, alternative splicing, HOST-virus
interaction, UBL conjugation pathway, zinc-finger,
polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB:
2vjf_A* 2hdp_A
Length = 64
Score = 31.3 bits (71), Expect = 0.063
Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 5/43 (11%)
Query: 18 ECSICLEYLKDAIL--TSCGHKF-CAACIDSWIDVKGKNYCPI 57
C IC K+ + GH C C K CP+
Sbjct: 10 PCVICQGRPKNGCIVHGKTGHLMACFTCAKKLK--KRNKPCPV 50
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1,
ring domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 31.3 bits (71), Expect = 0.084
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 18 ECSICLEYLKDAILTSCGHK-FCAAC 42
+C +C + +L C H C C
Sbjct: 17 DCVVCQNGTVNWVLLPCRHTCLCDGC 42
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL
conjugation pathway, DNA damage, nucleus,
phosphoprotein; HET: 1PE; 2.40A {Saccharomyces
cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Length = 968
Score = 34.4 bits (78), Expect = 0.084
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 17 FECSICLEYLKDA-ILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNYT-R 74
F + +KD IL + + I + + + P + L +D+ N R
Sbjct: 892 FLDPLMYTIMKDPVILPASKMNIDRSTIKAHL--LSDSTDPFNRMPLKLEDV-TPNEELR 948
Query: 75 REILE 79
++IL
Sbjct: 949 QKILC 953
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase
complex, ring zinc-finger, UBL conjugation pathway;
2.10A {Homo sapiens} PDB: 2yhn_A
Length = 79
Score = 30.9 bits (70), Expect = 0.14
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 12 NLDPRFECSICLEYLKDAILTSCGHKF-CAAC 42
L C +C E ++ CGH C +C
Sbjct: 14 KLKEAMLCMVCCEEEINSTFCPCGHTVCCESC 45
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 75
Score = 30.5 bits (69), Expect = 0.18
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 18 ECSICLEYLKDAILTSCGHKF-CAAC 42
C IC++ + CGH C C
Sbjct: 27 LCKICMDRNIAIVFVPCGHLVTCKQC 52
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace
motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Length = 60
Score = 29.3 bits (66), Expect = 0.35
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 11/47 (23%)
Query: 19 CSICLEYLKDAILTSCG--------HKFCAACIDSWIDVKGKNYCPI 57
C IC E L + +CG H+ +C+ +W+ + C I
Sbjct: 9 CWICNEELGNERFRACGCTGELENVHR---SCLSTWLTISRNTACQI 52
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA,
apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase,
IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB:
1qbh_A 2l9m_A 3eb5_A 3eb6_A
Length = 345
Score = 30.3 bits (66), Expect = 1.2
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 1 MEHQPVANNKLNLDPRFECSICLEYLKDAILTSCGHK-FCAAC 42
+ + L C +C++ + CGH C C
Sbjct: 280 VSGLSLEEQLRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQEC 322
>2rcq_A CRBP-II, retinol-binding protein II, cellular; cellular retinol
binding protein II, lipid-binding protein, X-RAY,
cytoplasm, transport, vitamin A; HET: TLA; 1.20A {Homo
sapiens} PDB: 2rct_A* 1b4m_A 1eii_A* 1opa_A 1opb_A*
1kqw_A* 1kqx_A
Length = 141
Score = 29.2 bits (65), Expect = 1.6
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
Query: 392 TSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIR-VADVLDPGRGFLMEDDTFV 450
++ + + T E++S++NF+ + KA + R +A L + + D F
Sbjct: 4 STRDQNGTWEMESNENFEGY---------MKALDIDFATRKIAVRLTQTKVIDQDGDNFK 54
Query: 451 IKTQVTEMTH 460
KT T +
Sbjct: 55 TKTTSTFRNY 64
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 27.6 bits (61), Expect = 2.2
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 7/46 (15%)
Query: 19 CSICL--EYLKDAILTSCG-----HKFCAACIDSWIDVKGKNYCPI 57
C IC + ++T C H AC+ WI C +
Sbjct: 18 CRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCEL 63
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 27.6 bits (60), Expect = 3.5
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 142 TVTVFPEHLNMQGSSNENFPCKFYQVGCREVFKSQALLEKH 182
T+ +H+ + + C+ CR+ FKS+A L H
Sbjct: 37 TLVGLKKHMEVCQKLQDALKCQ----HCRKQFKSKAGLNYH 73
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase,
2-oxoglutarate dehydrogenase comple pyruvate
dehydrogenase complex; HET: FAD; 1.70A {Thermus
thermophilus} PDB: 2eq7_A*
Length = 455
Score = 29.0 bits (66), Expect = 3.9
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 285 IKVNNFELNLKQTEEIEDNVVLKLCNGVYF 314
KV EL+L +D VV GV F
Sbjct: 68 AKVKGVELDLPALMAHKDKVVQANTQGVEF 97
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 28.7 bits (63), Expect = 4.0
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 19 CSICLEYLKDAILTS-CGHKFCAACIDSWIDV---KGKNYCPIDEKVLTKDDIFIDNYTR 74
C I +K + C H C ++ CP+ + + +++ I +
Sbjct: 252 CPISYTRMKYPSKSINCKHLQCF-DALWFLHSQLQIPTWQCPVCQIDIALENLAISEFV- 309
Query: 75 REILEN 80
+IL+N
Sbjct: 310 DDILQN 315
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.5 bits (63), Expect = 4.0
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 12/47 (25%)
Query: 12 NLDPRFECSICLEYLKDAIL-TSCGHKFCAAC--------IDS---W 46
NL+ C C Y + S G CA C +D+ W
Sbjct: 17 NLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEW 63
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex
protein, pyruvate dehydrogenase complex, glycine
decarboxylase complex; HET: FAD; 3.15A {Pisum sativum}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 470
Score = 28.6 bits (65), Expect = 4.6
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 285 IKVNNFELNLKQTEEIEDNVVLKLCNGVYF 314
+KV+N E++L +D V L G+
Sbjct: 75 VKVSNVEIDLAAMMGQKDKAVSNLTRGIEG 104
>3vg7_A Fatty acid-binding protein, liver; lfabp, S-SAD, copper kalpha,
palmitic acid, lipid binding PR; HET: PLM; 1.44A {Homo
sapiens} PDB: 3b2i_A* 3b2j_A* 3b2k_A* 3b2l_A* 3stk_A*
3stm_X* 3stn_A 3vg2_A* 3vg3_A* 3vg4_A* 3vg5_A* 3vg6_A*
3b2h_A* 2py1_A 2l67_A 2l68_A 2lkk_A* 2ju3_A 2ju7_A
2ju8_A* ...
Length = 132
Score = 27.5 bits (61), Expect = 4.8
Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 10/66 (15%)
Query: 396 FSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIR-VADVLDPGRGFLMEDDTFVIKTQ 454
FS ++QS +NF++F KA G + + + F
Sbjct: 6 FSGKYQLQSQENFEAFM---------KAIGLPEELIQKGKDIKGVSEIVQNGKHFKFTIT 56
Query: 455 VTEMTH 460
Sbjct: 57 AGSKVI 62
>1ifc_A Intestinal fatty acid binding protein; lipid-binding protein; 1.19A
{Rattus norvegicus} SCOP: b.60.1.2 PDB: 1ael_A 1icm_A*
1ifb_A 1ure_A* 2ifb_A* 3akn_A* 1icn_A* 1t8v_A 1dc9_A
1a57_A 1kzx_A 1kzw_A 3akm_A* 3ifb_A 1sa8_A
Length = 132
Score = 27.6 bits (61), Expect = 5.0
Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 10/66 (15%)
Query: 396 FSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIR-VADVLDPGRGFLMEDDTFVIKTQ 454
F T ++ ++N++ F + G N R + + E + F +K
Sbjct: 3 FDGTWKVDRNENYEKFM---------EKMGINVVKRKLGAHDNLKLTITQEGNKFTVKES 53
Query: 455 VTEMTH 460
Sbjct: 54 SNFRNI 59
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A
{Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 458
Score = 28.2 bits (64), Expect = 5.5
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 285 IKVNNFELNLKQTEEIEDNVVLKLCNGVYF 314
I V + L++ Q+ +D +V +L GV
Sbjct: 75 ISVASPRLDIGQSVAWKDGIVDRLTTGVAA 104
>1mdc_A Insect fatty acid binding protein; HET: PLM; 1.75A {Manduca sexta}
SCOP: b.60.1.2
Length = 132
Score = 27.2 bits (60), Expect = 5.6
Identities = 8/66 (12%), Positives = 17/66 (25%), Gaps = 10/66 (15%)
Query: 396 FSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIR-VADVLDPGRGFLMEDDTFVIKTQ 454
+ +NFD F K+ G ++ P + D++ +
Sbjct: 4 LGKVYSLVKQENFDGFL---------KSAGLSDDKIQALVSDKPTQKMEANGDSYSNTST 54
Query: 455 VTEMTH 460
Sbjct: 55 GGGGAK 60
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center,
glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus
stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 455
Score = 28.2 bits (64), Expect = 5.8
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 285 IKVNNFELNLKQTEEIEDNVVLKLCNGVYF 314
IK N ++ + +E + +VV KL GV
Sbjct: 70 IKAENVTIDFAKVQEWKASVVKKLTGGVEG 99
>3q6l_A Fatty acid-binding protein, adipocyte; lipid chaperone, lipid
binding protein; 1.40A {Homo sapiens} PDB: 2q9s_A*
2qm9_A*
Length = 152
Score = 27.3 bits (60), Expect = 6.3
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 10/66 (15%)
Query: 396 FSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIR-VADVLDPGRGFLMEDDTFVIKTQ 454
F T ++ S +NFD + K G R VA + P + D IK++
Sbjct: 25 FVGTWKLVSSENFDDYM---------KEVGVGFATRKVAGMAKPNMIISVNGDVITIKSE 75
Query: 455 VTEMTH 460
T
Sbjct: 76 STFKNT 81
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics,
protein structure initiati YORK structural genomics
research consortium; HET: FAD; 1.90A {Sinorhizobium
meliloti}
Length = 491
Score = 28.3 bits (64), Expect = 6.7
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 285 IKVNNFELNLKQTEEIEDNVVLKLCNGVYF 314
++V N +LNL++ +D V +GV F
Sbjct: 94 VEVANPKLNLQKMMAHKDATVKSNVDGVSF 123
>2qo4_A Liver-basic fatty acid binding protein; liver bIle acid-binding
protein, BABP, fatty acid-binding PR FABP, cholic acid
cholate, bIle acid; HET: CHD; 1.50A {Danio rerio} PDB:
2qo6_A* 2qo5_A* 2ftb_A* 2ft9_A*
Length = 126
Score = 27.1 bits (60), Expect = 7.2
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 10/66 (15%)
Query: 396 FSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIR-VADVLDPGRGFLMEDDTFVIKTQ 454
FS T ++ + +N++ F +A + +A + P F I ++
Sbjct: 3 FSGTWQVYAQENYEEFL---------RAISLPEEVIKLAKDVKPVTEIQQNGSDFTITSK 53
Query: 455 VTEMTH 460
T
Sbjct: 54 TPGKTV 59
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate
dehydrogenase, alpha- ketoglutarate dehydrogenase; HET:
FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A*
1zy8_A* 3rnm_A*
Length = 474
Score = 27.9 bits (63), Expect = 7.3
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 285 IKVNNFELNLKQTEEIEDNVVLKLCNGVYF 314
I+++ LNL + E + V L G+
Sbjct: 76 IEMSEVRLNLDKMMEQKSTAVKALTGGIAH 105
>1fdq_A Fatty acid-binding protein, brain; omega-3, long chain poly
unsaturated fatty acid, lipid binding protein; HET: HXA;
2.10A {Homo sapiens} SCOP: b.60.1.2 PDB: 1fe3_A* 1jjx_A
Length = 131
Score = 26.8 bits (59), Expect = 8.2
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 10/61 (16%)
Query: 401 EIQSDKNFDSFKRPVNFFLNKKAFGFNNFIR-VADVLDPGRGFLMEDDTFVIKTQVTEMT 459
++ + +NFD + KA G R V +V P E D VI+T T
Sbjct: 9 KLTNSQNFDEYM---------KALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN 59
Query: 460 H 460
Sbjct: 60 T 60
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase,
NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria
meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1bhy_A*
Length = 482
Score = 27.9 bits (63), Expect = 8.7
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 285 IKVNNFELNLKQTEEIEDNVVLKLCNGVYF 314
IK EL++ +D VV +L G+
Sbjct: 74 IKYPEPELDIDMLRAYKDGVVSRLTGGLAG 103
>1p6p_A Fatty acid-binding protein, liver; beta barrel, lipid binding
protein; 2.50A {Bufo arenarum} SCOP: b.60.1.2
Length = 125
Score = 26.3 bits (58), Expect = 10.0
Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 396 FSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIR-VADVLDPGRGFLMEDDTFVIKTQ 454
F+ T + + +N+++F + G I VA ++P + FV+ ++
Sbjct: 2 FNGTWNVYAQENYENFL---------RTVGLPEDIIKVAKDVNPVIEIEQNGNEFVVTSK 52
Query: 455 VTEMTH 460
+ TH
Sbjct: 53 TPKQTH 58
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.410
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,804,925
Number of extensions: 386144
Number of successful extensions: 962
Number of sequences better than 10.0: 1
Number of HSP's gapped: 904
Number of HSP's successfully gapped: 123
Length of query: 460
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 363
Effective length of database: 3,993,456
Effective search space: 1449624528
Effective search space used: 1449624528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.2 bits)