RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7814
(460 letters)
>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2
(TRAF2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 152
Score = 89.1 bits (220), Expect = 1e-21
Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 8/150 (5%)
Query: 310 NGVYFWKMYNFPAKLKEMKE-INRYFYSACFYSSCFGYRFCTRVNISREDAQ---YLSLF 365
+GV+ WK+ +FP K +E +S FY+S +GY+ C R+ ++ + +LSLF
Sbjct: 2 DGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLF 61
Query: 366 IHLVQGENDDILDWPFVGRIRFTALNTSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAFG 425
+++G ND +L WPF ++ L+ ++ + D + D SF+RP A G
Sbjct: 62 FVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRP--VNDMNIASG 119
Query: 426 FNNFIRVADVLDPGRGFLMEDDTFVIKTQV 455
F V ++ ++ DD IK V
Sbjct: 120 CPLFCPV-SKMEAKNSYV-RDDAIFIKAIV 147
>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 155
Score = 86.0 bits (212), Expect = 1e-20
Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 12/156 (7%)
Query: 309 CNGVYFWKMYNFPAKLKEMKE-INRYFYSACFYSSCFGYRFCTRVNI----SREDAQYLS 363
CNG+Y WK+ NF LK +E +S FY+ GY+ C R+++ ++ A Y+S
Sbjct: 3 CNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYIS 62
Query: 364 LFIHLVQGENDDILDWPFVGRIRFTALNTSSE---FSITDEIQSDKNFDSFKRPVNFFLN 420
LF+H +QGE D L WPF G IR T L+ S + + + + +F+RP N
Sbjct: 63 LFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRP-TIPRN 121
Query: 421 KKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVT 456
K FG+ F+ + + R F+ DDT +++ +V+
Sbjct: 122 PKGFGYVTFMHLEALRQ--RTFIK-DDTLLVRCEVS 154
>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3
(TRAF3) {Human (Homo sapiens) [TaxId: 9606]}
Length = 155
Score = 81.0 bits (199), Expect = 8e-19
Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 10/151 (6%)
Query: 310 NGVYFWKMYNFPAKLKEMKE-INRYFYSACFYSSCFGYRFCTRVNI---SREDAQYLSLF 365
NGV WK+ ++ + +E YS FY+ FGY+ C RV + +LSLF
Sbjct: 2 NGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLF 61
Query: 366 IHLVQGENDDILDWPFVGRIRFTALNTSS-EFSITDEIQSDKNFDSFKRPVNFFLNKKAF 424
+++GE D +L WPF ++ ++ S + D + D N SFK+ A
Sbjct: 62 FVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKK--PTGEMNIAS 119
Query: 425 GFNNFIRVADVLDPGRGFLMEDDTFVIKTQV 455
G F+ + + ++ +DDT IK V
Sbjct: 120 GCPVFVAQTVLEN--GTYI-KDDTIFIKVIV 147
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 62.4 bits (151), Expect = 8e-13
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 4 QPVANNKLNLDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDV-KGKNYCPIDEKVL 62
+ V N + EC ICLE +K+ + T C H FC C+ ++ KG + CP+ + +
Sbjct: 9 EEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68
Query: 63 TKDDIFIDNYTRREILEN--NLTCPYK 87
TK + ++ +++E + C ++
Sbjct: 69 TKRSLQ-ESTRFSQLVEELLKIICAFQ 94
>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 146
Score = 59.4 bits (143), Expect = 2e-11
Identities = 39/154 (25%), Positives = 61/154 (39%), Gaps = 23/154 (14%)
Query: 307 KLCNGVYFWKMYNFPAKLKEMKEINRYFYSACFYS-SCFGYRFCTRVNI---SREDAQYL 362
K+ Y W + NF +EM E S+ F S + ++C RVN E YL
Sbjct: 1 KVVKFSYMWTINNFSFCREEMGE---VIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYL 57
Query: 363 SLFIHLVQGENDDILDWPFVGRIRFTALNTSSEFSITDEIQSDKNFDSFKRPVNFFLNKK 422
SL++ LV + +F+ LN + ++ + F+ K
Sbjct: 58 SLYLLLVSCPK-----SEVRAKFKFSILN----------AKGEETKAMESQRAYRFVQGK 102
Query: 423 AFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVT 456
+GF FIR +LD G L DD + +V+
Sbjct: 103 DWGFKKFIRRDFLLDEANGLL-PDDKLTLFCEVS 135
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 55.4 bits (133), Expect = 1e-10
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 19 CSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPI-DEKVLTKDDIFIDNY 72
C IC E KD + CGH C +C+ SW + +G+ CP ++ + I +D +
Sbjct: 26 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQG-CPFCRCEIKGTEPIVVDPF 79
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein
1 (RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 55.7 bits (134), Expect = 1e-10
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 12 NLDPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDN 71
+ C IC L D + TSC H FC CI + V G YCP D+
Sbjct: 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGS-YCPSCRYPCFPTDLESPV 77
Query: 72 YTRREILEN 80
+ IL +
Sbjct: 78 KSFLNILNS 86
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 50.6 bits (121), Expect = 3e-09
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 5/40 (12%)
Query: 18 ECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPI 57
C C K L C H C+ C+++ CPI
Sbjct: 8 RCQQCQAEAKCPKLLPCLHTLCSGCLEAS-----GMQCPI 42
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 47.9 bits (114), Expect = 2e-08
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 13 LDPRFECSICLEYLKD----AILTSCGHKFCAACIDSWIDVKGKNYCPI 57
+D EC++CL L+D L CGH F A C+D W+ + CP+
Sbjct: 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWL--GSHSTCPL 48
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 48.0 bits (114), Expect = 4e-08
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 18 ECSICLEYLKD-AILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTK 64
C ICLE + ++ C H FC CI WI + CP+ + +
Sbjct: 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWI--RQNPTCPLCKVPVES 52
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 47.4 bits (112), Expect = 7e-08
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 17 FECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNYTRRE 76
F C I LE +KD ++ S G + + I W+D G CP ++ L + NY +
Sbjct: 9 FRCPISLELMKDPVIVSTGQTYERSSIQKWLD-AGHKTCPKSQETLLHAGL-TPNYVLKS 66
Query: 77 ILEN 80
++
Sbjct: 67 LIAL 70
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 42.9 bits (100), Expect = 4e-06
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 12 NLDPRFECSICLEYLKDA-ILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFID 70
L+ CS C L++ L C H FC+ C+ I CP+ D+ I
Sbjct: 18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCI----GTGCPVCYTPAWIQDLKI- 72
Query: 71 NYTRREILE 79
N +++
Sbjct: 73 NRQLDSMIQ 81
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 40.9 bits (95), Expect = 1e-05
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 6/55 (10%)
Query: 18 ECSICLEYLKD-----AILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDI 67
C C ++ CGH C +C+D +G CP L K +
Sbjct: 5 GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV-RGAGNCPECGTPLRKSNF 58
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 40.5 bits (94), Expect = 1e-05
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 18 ECSICLEYLKDA----ILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKD 65
EC +C+E L+ +CG++ C C + CP K +D
Sbjct: 2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGL-CPACRKPYPED 52
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 38.7 bits (89), Expect = 9e-05
Identities = 9/63 (14%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 17 FECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNYTRRE 76
I E +++ +T G + I+ + + ++ P+ LT++ + + +
Sbjct: 8 LCGKISFELMREPCITPSGITYDRKDIEEHLQ-RVGHFNPVTRSPLTQEQLIPNLAMKEV 66
Query: 77 ILE 79
I
Sbjct: 67 IDA 69
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 37.9 bits (87), Expect = 1e-04
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 19 CSICLEYLKDAILTS-----CGHKFCAACIDSWIDVKGKNYCPID 58
C IC E L + + +C+ +W+ + C I
Sbjct: 9 CWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQIC 53
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 37.4 bits (86), Expect = 4e-04
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 26/86 (30%)
Query: 17 FECSICLEYLKDA---ILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNYT 73
C +CL + C FC C+ ++++
Sbjct: 6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELL----------------------- 42
Query: 74 RREILENNLTCPYKQCSSQLSIPEYE 99
+E LE ++CP C Q + E E
Sbjct: 43 IKEGLETAISCPDAACPKQGHLQENE 68
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 34.3 bits (78), Expect = 0.002
Identities = 8/50 (16%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 19 CSICLEYLKDAILTS-CGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDI 67
C+I + + +L+ F + ++ ++ PI + L+ ++I
Sbjct: 3 CAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD--TGNDPITNEPLSIEEI 50
>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 34.9 bits (80), Expect = 0.002
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 19 CSICLEYLKDAILTSC----GHKFCAACIDSWIDVKGKN---YCPIDEK 60
C+IC E L+D C HKFC C I +G YCP EK
Sbjct: 11 CTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEK 59
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 35.8 bits (81), Expect = 0.002
Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 21/73 (28%)
Query: 10 KLNLDPRFECSICLEYLKDA------------------ILTSCGHKFCAACIDSWIDVK- 50
+L + P +C IC+E L A LT C H F C+ +
Sbjct: 19 ELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN 78
Query: 51 --GKNYCPIDEKV 61
G CP + +
Sbjct: 79 KDGSLQCPSCKTI 91
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 33.6 bits (76), Expect = 0.008
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 20/58 (34%)
Query: 18 ECSICLEYLKDA------------------ILTSCGHKFCAACIDSWIDVKGKNYCPI 57
C+IC ++ D C H F CI W+ K + CP+
Sbjct: 23 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL--KTRQVCPL 78
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human
(Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 30.6 bits (68), Expect = 0.12
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
Query: 17 FECSICLEYLKDA-ILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNYTRR 75
F I + D +L S + I + P + LT D I + +
Sbjct: 23 FLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLL--SDQTDPFNRSPLTMDQIRPNTELKE 80
Query: 76 EILE 79
+I
Sbjct: 81 KIQR 84
>d1scfa_ a.26.1.2 (A:) Stem cell factor, SCF {Human (Homo sapiens)
[TaxId: 9606]}
Length = 131
Score = 27.5 bits (61), Expect = 1.9
Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 2/75 (2%)
Query: 95 IPEYESHVNTCYLKYSQPSVEDITDSPTSSFRNTSGIPTNKRNSKILTVTVFPEHLNMQG 154
+P + + C++ + D F N S +N L V ++
Sbjct: 23 VPGMDVLPSHCWISEMVVQLSDSLTDLLDKFSNISEGLSNYSIIDKLVNIVDDLVECVKE 82
Query: 155 SSNEN--FPCKFYQV 167
+S+++ K +
Sbjct: 83 NSSKDLKKSFKSPEP 97
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus
thermophilus [TaxId: 274]}
Length = 394
Score = 27.3 bits (60), Expect = 4.1
Identities = 15/155 (9%), Positives = 37/155 (23%), Gaps = 23/155 (14%)
Query: 14 DPRFECSICLEYLKDAILTSCGHKFCAACIDSWIDVKGKNYCPIDEKVLTKDDIFIDNYT 73
DP + I + + L + + ++V+ +N L + +
Sbjct: 85 DPMVDNRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEEN-----LHALVQAMMQAPERA 139
Query: 74 RREILENNLTCPYKQCSSQLSIPEYESHVNTCYLKYSQPSVEDITDSPTSSFRNTSGIPT 133
+ + P + P Y + + P
Sbjct: 140 GGAMTAAGVLDPASGEPGDWTPPRYFNMMFQDLRGPRGGRGLLAYLRPE----------- 188
Query: 134 NKRNSKILTVTVFPEHLNMQGSSNENFPCKFYQVG 168
+F N+ +++ Q+G
Sbjct: 189 -------TAQGIFVNFKNVLDATSRKLGFGIAQIG 216
>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 23.8 bits (52), Expect = 5.5
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 19 CSICLEYLKDAILTSCGHKFCAAC 42
C C + + L++ + C
Sbjct: 11 CGGCNRPVLENYLSAMDTVWHPEC 34
>d1imhc2 b.2.5.3 (C:188-367) T-cell transcription factor NFAT5
(TONEBP), DNA-binding domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 180
Score = 26.3 bits (58), Expect = 6.5
Identities = 7/64 (10%), Positives = 17/64 (26%), Gaps = 2/64 (3%)
Query: 246 DDKSSEGDCSCKTCGDNSHLLKLVYERMVLLEQSMLEQKIKVNNFELNLKQTEEIEDNVV 305
+ + T L M L + K++ + E + + +
Sbjct: 90 NTTPCKEVDIEGTTVIEVGLDP--SNNMTLAVDCVGILKLRNADVEARIGIAGSKKKSTR 147
Query: 306 LKLC 309
+L
Sbjct: 148 ARLV 151
>d1rmda1 g.37.1.1 (A:87-116) V(D)J recombination activating protein
1 (RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 30
Score = 23.6 bits (51), Expect = 6.8
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 82 LTCPYKQCSSQLSIPEYESHVNT 104
+ CP + C+ ++S+ +Y HV++
Sbjct: 3 VKCPAQDCNEEVSLEKYNHHVSS 25
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.410
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,743,021
Number of extensions: 83862
Number of successful extensions: 243
Number of sequences better than 10.0: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 34
Length of query: 460
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 372
Effective length of database: 1,199,356
Effective search space: 446160432
Effective search space used: 446160432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.5 bits)