BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7817
(228 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F7P|A Chain A, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|B Chain B, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
Length = 296
Score = 167 bits (424), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 1 EQERVQKKTFVNWINSYL--SKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGR 58
E++RVQKKTF W+N +L ++RH I DL EDL+DG L++LLEVLS + LP EKGR
Sbjct: 69 ERDRVQKKTFTKWVNKHLIKAQRH----ISDLYEDLRDGHNLISLLEVLSGDSLPREKGR 124
Query: 59 NLRRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRA 118
R H L N AL +L+ +++KLVNI + D+ DG P + LGLIWTIIL+FQI + +
Sbjct: 125 --MRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVS 182
Query: 119 LAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEH--IKVSDFGPSWRDGHAFLSVID 176
G+ + +AK+ LL W + + ++ +F SWRDG F ++I
Sbjct: 183 --------------GQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIH 228
Query: 177 NIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
+ L+D+ + +QTN LD AF+VAE +LG+ RLLDPE
Sbjct: 229 RHKPLLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPE 269
>pdb|1SH5|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
pdb|1SH5|B Chain B, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
pdb|1SH6|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
Length = 245
Score = 166 bits (421), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 133/222 (59%), Gaps = 21/222 (9%)
Query: 1 EQERVQKKTFVNWINSYLSKR---HPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKG 57
E++RVQKKTF W+N +L K I DL EDL+DG L++LLEVLS + LP EKG
Sbjct: 8 ERDRVQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPREKG 67
Query: 58 RNLRRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTR 117
R R H L N AL +L+ +++KLVNI + D+ DG P + LGLIWTIIL+FQI +
Sbjct: 68 R--MRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQV 125
Query: 118 ALAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEH--IKVSDFGPSWRDGHAFLSVI 175
+ G+ + +AK+ LL W + + ++ +F SWRDG F ++I
Sbjct: 126 S--------------GQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAII 171
Query: 176 DNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
+ L+D+ + +QTN LD AF+VAE +LG+ RLLDPE
Sbjct: 172 HRHKPMLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPE 213
>pdb|1MB8|A Chain A, Crystal Structure Of The Actin Binding Domain Of Plectin
Length = 243
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 133/222 (59%), Gaps = 21/222 (9%)
Query: 1 EQERVQKKTFVNWINSYLSKR---HPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKG 57
E++RVQKKTF W+N +L K I DL EDL+DG L++LLEVLS + LP EKG
Sbjct: 11 ERDRVQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPREKG 70
Query: 58 RNLRRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTR 117
R R H L N AL +L+ +++KLVNI + D+ DG P + LGLIWTIIL+FQI +
Sbjct: 71 R--MRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQV 128
Query: 118 ALAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEH--IKVSDFGPSWRDGHAFLSVI 175
+ G+ + +AK+ LL W + + ++ +F SWRDG F ++I
Sbjct: 129 S--------------GQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAII 174
Query: 176 DNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
+ L+D+ + +QTN LD AF+VAE +LG+ RLLDPE
Sbjct: 175 HRHKPLLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPE 216
>pdb|1DXX|A Chain A, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|B Chain B, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|C Chain C, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|D Chain D, N-Terminal Actin-Binding Domain Of Human Dystrophin
Length = 246
Score = 146 bits (369), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 130/220 (59%), Gaps = 18/220 (8%)
Query: 1 EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNL 60
E+E VQKKTF W+N+ SK I++L DL+DG +LL LLE L+ +KLP EKG
Sbjct: 12 EREDVQKKTFTKWVNAQFSK-FGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPKEKGST- 69
Query: 61 RRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRALA 120
R H L+N N AL+ LQ+ + LVNI S+D+VDG + LGLIW IIL++Q++ + +
Sbjct: 70 -RVHALNNVNKALRVLQNNNVDLVNIGSTDIVDGNHKLTLGLIWNIILHWQVKNVMKNIM 128
Query: 121 ALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEH--IKVSDFGPSWRDGHAFLSVIDNI 178
A G + S +K LL WV + + + V +F SW DG A ++I +
Sbjct: 129 A-----------GLQQTNS-EKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSH 176
Query: 179 QKDLVDI-PALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
+ DL D +S+Q+ RL+ AFN+A LGI +LLDPE
Sbjct: 177 RPDLFDWNSVVSQQSATQRLEHAFNIARYQLGIEKLLDPE 216
>pdb|2EYI|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin 1 At 1.7 Angstrom Resolution
pdb|2EYN|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin 1 At 1.8 Angstrom Resolution
Length = 234
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 126/218 (57%), Gaps = 25/218 (11%)
Query: 3 ERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPV-EKGRNLR 61
E+ Q+KTF W NS+L R +I+++ ED +DG KL+ LLEV+S E+L E+G+
Sbjct: 5 EKQQRKTFTAWCNSHL--RKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGK--M 60
Query: 62 RPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRALAA 121
R H +SN N AL F+ SK +KLV+I + ++VDG + LG+IWTIIL F I++
Sbjct: 61 RVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQD------- 113
Query: 122 LSAEGYTSPEPGKKDVESAKKTLLRWVS--NALPEHIKVSDFGPSWRDGHAFLSVIDNIQ 179
+S E SAK+ LL W A +++ + +F SW+DG F ++I +
Sbjct: 114 ISVE-----------ETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHR 162
Query: 180 KDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
+L+D L K L+TAF+VAE L I ++LD E
Sbjct: 163 PELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAE 200
>pdb|1WKU|A Chain A, High Resolution Structure Of The Human Alpha-Actinin
Isoform 3
pdb|1WKU|B Chain B, High Resolution Structure Of The Human Alpha-Actinin
Isoform 3
Length = 254
Score = 134 bits (338), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 125/218 (57%), Gaps = 25/218 (11%)
Query: 3 ERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLP-VEKGRNLR 61
E+ Q+KTF W NS+L R +I+++ ED ++G KL+ LLEV+S E+LP +KG+
Sbjct: 25 EKQQRKTFTAWCNSHL--RKAGTQIENIEEDFRNGLKLMLLLEVISGERLPRPDKGK--M 80
Query: 62 RPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRALAA 121
R H ++N N AL F+ SK +KLV+I + ++VDG + LG+IWTIIL F I++
Sbjct: 81 RFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQD------- 133
Query: 122 LSAEGYTSPEPGKKDVESAKKTLLRWVS--NALPEHIKVSDFGPSWRDGHAFLSVIDNIQ 179
+S E SAK+ LL W A ++ V +F SW+DG A ++I +
Sbjct: 134 ISVEE-----------TSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHR 182
Query: 180 KDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
DL+D L K L+TAF VAE L I ++LD E
Sbjct: 183 PDLIDYAKLRKDDPIGNLNTAFEVAEKYLDIPKMLDAE 220
>pdb|1TJT|A Chain A, X-Ray Structure Of The Human Alpha-Actinin Isoform 3 At
2.2a Resolution
Length = 250
Score = 134 bits (338), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 125/218 (57%), Gaps = 25/218 (11%)
Query: 3 ERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLP-VEKGRNLR 61
E+ Q+KTF W NS+L R +I+++ ED ++G KL+ LLEV+S E+LP +KG+
Sbjct: 21 EKQQRKTFTAWCNSHL--RKAGTQIENIEEDFRNGLKLMLLLEVISGERLPRPDKGK--M 76
Query: 62 RPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRALAA 121
R H ++N N AL F+ SK +KLV+I + ++VDG + LG+IWTIIL F I++
Sbjct: 77 RFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQD------- 129
Query: 122 LSAEGYTSPEPGKKDVESAKKTLLRWVS--NALPEHIKVSDFGPSWRDGHAFLSVIDNIQ 179
+S E SAK+ LL W A ++ V +F SW+DG A ++I +
Sbjct: 130 ISVEE-----------TSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHR 178
Query: 180 KDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
DL+D L K L+TAF VAE L I ++LD E
Sbjct: 179 PDLIDYAKLRKDDPIGNLNTAFEVAEKYLDIPKMLDAE 216
>pdb|1QAG|A Chain A, Actin Binding Region Of The Dystrophin Homologue Utrophin
pdb|1QAG|B Chain B, Actin Binding Region Of The Dystrophin Homologue Utrophin
Length = 226
Score = 133 bits (335), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 121/215 (56%), Gaps = 17/215 (7%)
Query: 5 VQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPH 64
VQKKTF WIN+ SK P I+D DLKDG KLL LLE L+ LP E+G R H
Sbjct: 2 VQKKTFTKWINARFSKSGKP-PINDXFTDLKDGRKLLDLLEGLTGTSLPKERGST--RVH 58
Query: 65 FLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRALAALSA 124
L+N N LQ L ++LVNI +D+VDG + LGL+W+IIL++Q+++ + + +
Sbjct: 59 ALNNVNRVLQVLHQNNVELVNIGGTDIVDGNHKLTLGLLWSIILHWQVKDVXKDVXSDLQ 118
Query: 125 EGYTSPEPGKKDVESAKKTLLRWVSNALPEH--IKVSDFGPSWRDGHAFLSVIDNIQKDL 182
+ +++K LL WV + + V +F SW DG AF +V+ + DL
Sbjct: 119 Q------------TNSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDL 166
Query: 183 VDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
+ K + RL+ AF+ A++ LGI +LLDPE
Sbjct: 167 FSWDKVVKXSPIERLEHAFSKAQTYLGIEKLLDPE 201
>pdb|2R0O|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin-4 Mutant(K255e)
pdb|2R0O|B Chain B, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin-4 Mutant(K255e)
Length = 237
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 126/218 (57%), Gaps = 25/218 (11%)
Query: 3 ERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPV-EKGRNLR 61
E+ Q+KTF W NS+L R +I+++ ED +DG KL+ LLEV+S E+LP E+G+
Sbjct: 10 EKQQRKTFTAWCNSHL--RKAGTQIENIDEDFRDGLKLMLLLEVISGERLPKPERGK--M 65
Query: 62 RPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRALAA 121
R H ++N N AL F+ SK +KLV+I + ++VDG + LG+IWTIIL F I++
Sbjct: 66 RVHKINNVNKALDFIASKGVKLVSIGAEEIVDGNAKMTLGMIWTIILRFAIQD------- 118
Query: 122 LSAEGYTSPEPGKKDVESAKKTLLRWVS--NALPEHIKVSDFGPSWRDGHAFLSVIDNIQ 179
+S E SAK+ LL W A +++ V +F SW+DG AF ++I +
Sbjct: 119 ISVEE-----------TSAKEGLLLWCQRKTAPYKNVNVQNFHISWKDGLAFNALIHRHR 167
Query: 180 KDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
+L++ L K L+ AF VAE L I ++LD E
Sbjct: 168 PELIEYDKLRKDDPVTNLNNAFEVAEKYLDIPKMLDAE 205
>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
pdb|1SJJ|B Chain B, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
Length = 863
Score = 130 bits (328), Expect = 5e-31, Method: Composition-based stats.
Identities = 84/217 (38%), Positives = 124/217 (57%), Gaps = 23/217 (10%)
Query: 3 ERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRR 62
E+ Q+KTF W NS+L R +I+++ ED +DG KL+ LLEV+S E+L + R R
Sbjct: 6 EKQQRKTFTAWCNSHL--RKAGTQIENIEEDFRDGLKLMLLLEVISGERL-AKPERGKMR 62
Query: 63 PHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRALAAL 122
H +SN N AL F+ SK +KLV+I + ++VDG + LG+IWTIIL F I++ +
Sbjct: 63 VHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQD-------I 115
Query: 123 SAEGYTSPEPGKKDVESAKKTLLRWVS--NALPEHIKVSDFGPSWRDGHAFLSVIDNIQK 180
S E SAK+ LL W A +++ + +F SW+DG F ++I +
Sbjct: 116 SVEE-----------TSAKEGLLLWYQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRP 164
Query: 181 DLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
+L+D L K L+TAF+VAE L I ++LD E
Sbjct: 165 ELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAE 201
>pdb|2WA5|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain
At 1.9 Angstroms Resolution
Length = 245
Score = 110 bits (275), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 123/220 (55%), Gaps = 21/220 (9%)
Query: 3 ERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRR 62
+++Q+ TF W N +L + RI +L DL DG +L+ALLEVLS +++ + +R
Sbjct: 18 KKIQQNTFTRWCNEHLKCVNK--RIGNLQTDLSDGLRLIALLEVLSQKRM---YRKYHQR 72
Query: 63 PHF----LSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRA 118
P F L N + AL+FL + IKLV+I+S +VDG ++LGL+WT+IL++ I +
Sbjct: 73 PTFRQMQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSI-----S 127
Query: 119 LAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEHIKVSDFGPSWRDGHAFLSVIDNI 178
+ EG + KK ++ K+ LL W+ N +P ++ +++F +W+DG A +++D+
Sbjct: 128 MPVWEDEG---DDDAKK--QTPKQRLLGWIQNKIP-YLPITNFNQNWQDGKALGALVDSC 181
Query: 179 QKDLV-DIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
L D + Q A A+ LG+ +++ PE
Sbjct: 182 APGLCPDWESWDPQKPVDNAREAMQQADDWLGVPQVITPE 221
>pdb|4B7L|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain
With 1st Filamin Repeat
pdb|4B7L|B Chain B, Crystal Structure Of Human Filamin B Actin Binding Domain
With 1st Filamin Repeat
Length = 347
Score = 110 bits (275), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 123/220 (55%), Gaps = 21/220 (9%)
Query: 3 ERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRR 62
+++Q+ TF W N +L + RI +L DL DG +L+ALLEVLS +++ + +R
Sbjct: 15 KKIQQNTFTRWCNEHLKSVNK--RIGNLQTDLSDGLRLIALLEVLSQKRM---YRKYHQR 69
Query: 63 PHF----LSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRA 118
P F L N + AL+FL + IKLV+I+S +VDG ++LGL+WT+IL++ I +
Sbjct: 70 PTFRQMQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSI-----S 124
Query: 119 LAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEHIKVSDFGPSWRDGHAFLSVIDNI 178
+ EG + KK ++ K+ LL W+ N +P ++ +++F +W+DG A +++D+
Sbjct: 125 MPVWEDEG---DDDAKK--QTPKQRLLGWIQNKIP-YLPITNFNQNWQDGKALGALVDSC 178
Query: 179 QKDLV-DIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
L D + Q A A+ LG+ +++ PE
Sbjct: 179 APGLCPDWESWDPQKPVDNAREAMQQADDWLGVPQVITPE 218
>pdb|2WA7|A Chain A, Structure Of The M202v Mutant Of Human Filamin B Actin
Binding Domain At 1.85 Angstroms Resolution
Length = 245
Score = 110 bits (274), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 123/220 (55%), Gaps = 21/220 (9%)
Query: 3 ERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRR 62
+++Q+ TF W N +L + RI +L DL DG +L+ALLEVLS +++ + +R
Sbjct: 18 KKIQQNTFTRWCNEHLKCVNK--RIGNLQTDLSDGLRLIALLEVLSQKRM---YRKYHQR 72
Query: 63 PHF----LSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRA 118
P F L N + AL+FL + IKLV+I+S +VDG ++LGL+WT+IL++ I +
Sbjct: 73 PTFRQMQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSI-----S 127
Query: 119 LAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEHIKVSDFGPSWRDGHAFLSVIDNI 178
+ EG + KK ++ K+ LL W+ N +P ++ +++F +W+DG A +++D+
Sbjct: 128 MPVWEDEG---DDDAKK--QTPKQRLLGWIQNKIP-YLPITNFNQNWQDGKALGALVDSC 181
Query: 179 QKDLV-DIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
L D + Q A A+ LG+ +++ PE
Sbjct: 182 APGLCPDWESWDPQKPVDNAREAVQQADDWLGVPQVITPE 221
>pdb|3HOC|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
Mutant E254k
pdb|3HOC|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
Mutant E254k
Length = 272
Score = 107 bits (267), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 25/222 (11%)
Query: 3 ERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRR 62
+++Q+ TF W N +L + RI +L DL DG +L+ALLEVLS +K+ ++ +R
Sbjct: 45 KKIQQNTFTRWCNEHL--KCVSKRIANLQTDLSDGLRLIALLEVLSQKKM---HRKHNQR 99
Query: 63 PHF----LSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRA 118
P F L N + AL+FL + IKLV+I+S +VDG ++LGLIWT+IL++ I
Sbjct: 100 PTFRQMQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLIWTLILHYSI------ 153
Query: 119 LAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEHIKVSDFGPSWRDGHAFLSVIDNI 178
S + E + ++ K+ LL W+ N LP+ + +++F W+ G A +++D+
Sbjct: 154 ----SMPMWDEEEDEEAKKQTPKQRLLGWIQNKLPQ-LPITNFSRDWQSGRALGALVDSC 208
Query: 179 QKDLV---DIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
L D SK R A A+ LGI +++ PE
Sbjct: 209 APGLCPDWDSWDASKPVTNAR--EAMQQADDWLGIPQVITPE 248
>pdb|3HOP|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
pdb|3HOP|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
pdb|3HOR|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
(Reduced)
pdb|3HOR|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
(Reduced)
Length = 272
Score = 107 bits (267), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 25/222 (11%)
Query: 3 ERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRR 62
+++Q+ TF W N +L + RI +L DL DG +L+ALLEVLS +K+ ++ +R
Sbjct: 45 KKIQQNTFTRWCNEHL--KCVSKRIANLQTDLSDGLRLIALLEVLSQKKM---HRKHNQR 99
Query: 63 PHF----LSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRA 118
P F L N + AL+FL + IKLV+I+S +VDG ++LGLIWT+IL++ I
Sbjct: 100 PTFRQMQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLIWTLILHYSI------ 153
Query: 119 LAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEHIKVSDFGPSWRDGHAFLSVIDNI 178
S + E + ++ K+ LL W+ N LP+ + +++F W+ G A +++D+
Sbjct: 154 ----SMPMWDEEEDEEAKKQTPKQRLLGWIQNKLPQ-LPITNFSRDWQSGRALGALVDSC 208
Query: 179 QKDLV---DIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
L D SK R A A+ LGI +++ PE
Sbjct: 209 APGLCPDWDSWDASKPVTNAR--EAMQQADDWLGIPQVITPE 248
>pdb|2WFN|A Chain A, Filamin A Actin Binding Domain
pdb|2WFN|B Chain B, Filamin A Actin Binding Domain
Length = 278
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 25/222 (11%)
Query: 3 ERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRR 62
+++Q+ TF W N +L + RI +L DL DG +L+ALLEVLS +K+ ++ +R
Sbjct: 42 KKIQQNTFTRWCNEHL--KCVSKRIANLQTDLSDGLRLIALLEVLSQKKM---HRKHNQR 96
Query: 63 PHF----LSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRA 118
P F L N + AL+FL + IKLV+I+S +VDG ++LGLIWT+IL++ I
Sbjct: 97 PTFRQMQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLIWTLILHYSI------ 150
Query: 119 LAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEHIKVSDFGPSWRDGHAFLSVIDNI 178
S + E + ++ K+ LL W+ N LP+ + +++F W+ G A +++D+
Sbjct: 151 ----SMPMWDEEEDEEAKKQTPKQRLLGWIQNKLPQ-LPITNFSRDWQSGRALGALVDSC 205
Query: 179 QKDLV---DIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
L D SK R A A+ LGI +++ PE
Sbjct: 206 APGLCPDWDSWDASKPVTNAR--EAMQQADDWLGIPQVITPE 245
>pdb|3FER|A Chain A, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a.
pdb|3FER|B Chain B, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a.
pdb|3FER|C Chain C, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a.
pdb|3FER|D Chain D, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a
Length = 262
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 121/220 (55%), Gaps = 21/220 (9%)
Query: 3 ERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRR 62
+++Q+ TF W N +L + RI +L DL DG +L+ALLEVLS ++ + +R
Sbjct: 25 KKIQQNTFTRWCNEHLKCVNK--RIGNLQTDLSDGLRLIALLEVLSQKR---XYRKYHQR 79
Query: 63 PHF----LSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRA 118
P F L N + AL+FL + IKLV+I+S +VDG ++LGL+WT+IL++ I +
Sbjct: 80 PTFRQXQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSI-----S 134
Query: 119 LAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEHIKVSDFGPSWRDGHAFLSVIDNI 178
EG + KK ++ K+ LL W+ N +P ++ +++F +W+DG A +++D+
Sbjct: 135 XPVWEDEG---DDDAKK--QTPKQRLLGWIQNKIP-YLPITNFNQNWQDGKALGALVDSC 188
Query: 179 QKDLV-DIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
L D + Q A A+ LG+ +++ PE
Sbjct: 189 APGLCPDWESWDPQKPVDNAREAXQQADDWLGVPQVITPE 228
>pdb|2WA6|A Chain A, Structure Of The W148r Mutant Of Human Filamin B Actin
Binding Domain At 1.95 Angstroms Resolution
Length = 245
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 122/220 (55%), Gaps = 21/220 (9%)
Query: 3 ERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRR 62
+++Q+ TF W N +L + RI +L DL DG +L+ALLEVLS +++ + +R
Sbjct: 18 KKIQQNTFTRWCNEHLKCVNK--RIGNLQTDLSDGLRLIALLEVLSQKRM---YRKYHQR 72
Query: 63 PHF----LSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRA 118
P F L N + AL+FL + IKLV+I+S +VDG ++LGL+WT+IL++ I +
Sbjct: 73 PTFRQMQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSI-----S 127
Query: 119 LAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEHIKVSDFGPSWRDGHAFLSVIDNI 178
+ EG + KK ++ K+ LL + N +P ++ +++F +W+DG A +++D+
Sbjct: 128 MPVWEDEG---DDDAKK--QTPKQRLLGRIQNKIP-YLPITNFNQNWQDGKALGALVDSC 181
Query: 179 QKDLV-DIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
L D + Q A A+ LG+ +++ PE
Sbjct: 182 APGLCPDWESWDPQKPVDNAREAMQQADDWLGVPQVITPE 221
>pdb|3LUE|K Chain K, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|M Chain M, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|L Chain L, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|O Chain O, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|N Chain N, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|Q Chain Q, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|P Chain P, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|S Chain S, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|R Chain R, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|T Chain T, Model Of Alpha-Actinin Ch1 Bound To F-Actin
Length = 109
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 76/111 (68%), Gaps = 5/111 (4%)
Query: 3 ERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPV-EKGRNLR 61
E+ Q+KTF W NS+L R +I+++ ED ++G KL+ LLEV+S E+LP +KG+
Sbjct: 3 EKQQRKTFTAWCNSHL--RKAGTQIENIEEDFRNGLKLMLLLEVISGERLPRPDKGK--M 58
Query: 62 RPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQI 112
R H ++N N AL F+ SK +KLV+I + ++VDG + LG+IWTIIL F I
Sbjct: 59 RFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAI 109
>pdb|1BKR|A Chain A, Calponin Homology (Ch) Domain From Human Beta-Spectrin At
1.1 Angstrom Resolution
Length = 109
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 138 ESAKKTLLRWVS--NALPEHIKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRH 195
+SAK LL W A ++ + +F SWRDG AF ++I + DL+D L K +
Sbjct: 2 KSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHY 61
Query: 196 RLDTAFNVAESNLGIARLLDPE 217
L AFN+AE +LG+ +LLDPE
Sbjct: 62 NLQNAFNLAEQHLGLTKLLDPE 83
>pdb|1AA2|A Chain A, Calponin Homology (Ch) Domain From Human Beta-Spectrin
Length = 108
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 138 ESAKKTLLRWVS--NALPEHIKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRH 195
+SAK LL W A ++ + +F SWRDG AF ++I + DL+D L K +
Sbjct: 1 KSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHY 60
Query: 196 RLDTAFNVAESNLGIARLLDPE 217
L AFN+AE +LG+ +LLDPE
Sbjct: 61 NLQNAFNLAEQHLGLTKLLDPE 82
>pdb|2YRN|A Chain A, Solution Structure Of The Ch Domain From Human Neuron
Navigator 2
Length = 129
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 60/109 (55%)
Query: 6 QKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHF 65
QK+ + +W N YL+K I DL +D+ DG L +++V++NEK+ G R
Sbjct: 19 QKRIYTDWANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIEDINGCPKNRSQM 78
Query: 66 LSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEE 114
+ N + L FL +K I + +++ ++ +G +LGL +++ Y Q ++
Sbjct: 79 IENIDACLNFLAAKGINIQGLSAEEIRNGNLKAILGLFFSLSRYKQQQQ 127
>pdb|1WYQ|A Chain A, Solution Structure Of The Second Ch Domain Of Human
Spectrin Beta Chain, Brain 2
Length = 127
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 133 GKKDVESAKKTLLRWVS--NALPEHIKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSK 190
G AK LL W A ++ V +F SWRDG AF +++ + DL+D +L K
Sbjct: 1 GSSGSSGAKDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLLDFESLKK 60
Query: 191 QTNRHRLDTAFNVAESNLGIARLLDPE 217
+ L AFN+AE LG+ +LLDPE
Sbjct: 61 CNAHYNLQNAFNLAEKELGLTKLLDPE 87
>pdb|1AOA|A Chain A, N-Terminal Actin-Crosslinking Domain From Human Fimbrin
Length = 275
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 92/189 (48%), Gaps = 20/189 (10%)
Query: 6 QKKTFVNWINSYLSK----RHP-PLR--IDDLTEDLKDGTKLLALLEVLSNEKLPVEKGR 58
+K FVNWIN L RH P+ DDL + + DG L ++ LS E+
Sbjct: 25 EKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMIN-LSVPDTIDERAI 83
Query: 59 NLRR--PHFLS-NANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTII---LYFQI 112
N ++ P + N N AL + +VNI + DL G+P +VLGL+W II L+ I
Sbjct: 84 NKKKLTPFIIQENLNLALNSASAIGCHVVNIGAEDLRAGKPHLVLGLLWQIIKIGLFADI 143
Query: 113 E-ENTRALAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEH--IKVSDFGPSWRDGH 169
E ALAAL +G T E K S ++ LLRW + L K+++F +D
Sbjct: 144 ELSRNEALAALLRDGETLEELMKL---SPEELLLRWANFHLENSGWQKINNFSADIKDSK 200
Query: 170 AFLSVIDNI 178
A+ +++ I
Sbjct: 201 AYFHLLNQI 209
>pdb|2D87|A Chain A, Solution Structure Of The Ch Domain From Human Smoothelin
Splice Isoform L2
Length = 128
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 133 GKKDVESAKKTLLRWVSNAL--PEHIKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSK 190
G K+ LL W EH+ + +F SW DG AF +++ N + D LS
Sbjct: 1 GSSGSSGIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSP 60
Query: 191 QTNRHRLDTAFNVAESNLGIARLLDPE 217
Q R + AF+ AE++ +LLD E
Sbjct: 61 QNRRQNFEVAFSSAETHADCPQLLDTE 87
>pdb|1BHD|A Chain A, Second Calponin Homology Domain From Utrophin
pdb|1BHD|B Chain B, Second Calponin Homology Domain From Utrophin
Length = 118
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 139 SAKKTLLRWVSNALPEH--IKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHR 196
+++K LL WV + + V +F SW DG AF +V+ + DL + K + R
Sbjct: 8 NSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVVKMSPIER 67
Query: 197 LDTAFNVAESNLGIARLLDPE 217
L+ AF+ A++ LGI +LLDPE
Sbjct: 68 LEHAFSKAQTYLGIEKLLDPE 88
>pdb|2D89|A Chain A, Solution Structure Of The Ch Domain From Human Eh Domain
Binding Protein 1
Length = 119
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 140 AKKTLLRWVSNALPEH--IKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHRL 197
A ++LL W + +K+++F SWR+G +F +++ + + DL+D +L+ Q +
Sbjct: 10 ASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQDIKENN 69
Query: 198 DTAFNVAESNLGIARLLDPE 217
A++ +++GI+RLL+P
Sbjct: 70 KKAYD-GFASIGISRLLEPS 88
>pdb|2JV9|A Chain A, The Solution Structure Of Calponin Homology Domain From
Smoothelin-Like 1
pdb|2K3S|A Chain A, Haddock-Derived Structure Of The Ch-Domain Of The
Smoothelin-Like 1 Complexed With The C-Domain Of
Apocalmodulin
Length = 119
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 140 AKKTLLRWVSNAL--PEHIKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHRL 197
+K LL W EH+ + +F SW G AF ++I + D L RH
Sbjct: 5 SKNMLLEWCRAMTRNYEHVDIQNFSSSWSSGMAFCALIHKFFPEAFDYAELDPAKRRHNF 64
Query: 198 DTAFNVAESNLGIARLLD 215
AF+ AE A+LL+
Sbjct: 65 TLAFSTAEKLADCAQLLE 82
>pdb|2D88|A Chain A, Solution Structure Of The Ch Domain From Human Mical-3
Protein
Length = 121
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 133 GKKDVESAKKTLLRWVSNALPEH--IKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSK 190
G V + K LL W + + V+D SW+ G A ++I + DL+D +L +
Sbjct: 4 GSSGVARSSK-LLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLIDFDSLDE 62
Query: 191 QTNRHRLDTAFNVAESNLGIARLL 214
Q AF++AE LGI+ ++
Sbjct: 63 QNVEKNNQLAFDIAEKELGISPIM 86
>pdb|1PXY|A Chain A, Crystal Structure Of The Actin-Crosslinking Core Of
Arabidopsis Fimbrin
pdb|1PXY|B Chain B, Crystal Structure Of The Actin-Crosslinking Core Of
Arabidopsis Fimbrin
Length = 506
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 102/236 (43%), Gaps = 35/236 (14%)
Query: 6 QKKTFVNWINSYLS-----KRHPPL--RIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGR 58
+K FV IN YL K+ PL + L E +KDG L L+ V + E+
Sbjct: 8 EKGPFVQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTID-ERAI 66
Query: 59 NLRRP--HFLSNANTALQFLQSKRI--KLVNINSSDLVDGRPAVVLGLIWTIILYFQIEE 114
N +R + N N L +K + +VNI + DL +GRP +VLGLI +I
Sbjct: 67 NTKRVLNPWERNENHTLCLNSAKAVGCSVVNIGTQDLAEGRPHLVLGLISQLI------- 119
Query: 115 NTRALAALSAEGYTSPE-----PGKKDVES-----AKKTLLRWVSNALPE---HIKVSDF 161
+ LA L+ + +P+ DVE +K LL+W++ L + VS+F
Sbjct: 120 KIQLLADLNLK--KTPQLVELLEDSDDVEELLRLPPEKVLLKWMNFHLKKGGYKKTVSNF 177
Query: 162 GPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
+D A+ +++ + + D L + R + + AE + R L E
Sbjct: 178 SADLKDAQAYAFLLNVLAPEHCDPATLDAKDPLERAELVLSHAE-RMNCKRYLTAE 232
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 58/110 (52%), Gaps = 7/110 (6%)
Query: 7 KKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRN--LRRP- 63
++ + WINS + ++++ ED+++G LL +L+ +S + + ++ P
Sbjct: 278 ERCYRLWINSLGIDSY----VNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPF 333
Query: 64 HFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIE 113
+ N N ++ + + LVN+ +D+V G ++LGL+W ++ + ++
Sbjct: 334 RKVENCNQVIKIGKQLKFSLVNVAGNDIVQGNKKLILGLLWQLMRFHMLQ 383
>pdb|2E9K|A Chain A, Solution Structure Of The Ch Domain From Human Mical-2
Length = 121
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 144 LLRWVSNALP--EHIKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHRLDTAF 201
LL W +H+ V+D SWR G A ++I + +L++ +L++ AF
Sbjct: 14 LLTWCQQQTEGYQHVNVTDLTTSWRSGLALCAIIHRFRPELINFDSLNEDDAVENNQLAF 73
Query: 202 NVAESNLGI 210
+VAE GI
Sbjct: 74 DVAEREFGI 82
>pdb|1RT8|A Chain A, Crystal Structure Of The Actin-Crosslinking Core Of
Schizosaccharomyces Pombe Fimbrin
Length = 513
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 80/195 (41%), Gaps = 30/195 (15%)
Query: 1 EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEK---- 56
E ER + + F W+NS I D +L+DG LL + ++ + +K
Sbjct: 282 EGER-EARVFTLWLNSL----DVTPSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKA 336
Query: 57 ---GRNLRRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIE 113
G + R + N N A+ +++ LV I +D+ DG + L L+W ++ I
Sbjct: 337 PASGDEMMRFKAVENCNYAVDLGKNQGFSLVGIQGADITDGSRTLTLALVWQ-MMRMNI- 394
Query: 114 ENTRALAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEHIKVSDF----GPSWRDGH 169
T+ L +LS G T + ++ W ++ + K S PS G
Sbjct: 395 --TKTLHSLSRGGKT----------LSDSDMVAWANSMAAKGGKGSQIRSFRDPSISTGV 442
Query: 170 AFLSVIDNIQKDLVD 184
L V+ I+ + VD
Sbjct: 443 FVLDVLHGIKSEYVD 457
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 20/119 (16%)
Query: 6 QKKTFVNWINSYLS------KRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLP------ 53
+++ F+ INS L+ R P I+ T + D K +L L N+ +P
Sbjct: 13 ERREFIKHINSVLAGDPDVGSRVP---INTETFEFFDQCKDGLILSKLINDSVPDTIDER 69
Query: 54 -VEKGRN---LRRPHFLSNANTALQFLQS-KRIKLVNINSSDLVDGRPAVVLGLIWTII 107
+ K RN L + N N + ++ I + NI + D+++GR ++LGL+W II
Sbjct: 70 VLNKQRNNKPLDNFKCIENNNVVINSAKAMGGISITNIGAGDILEGREHLILGLVWQII 128
>pdb|1WYL|A Chain A, Solution Structure Of The Ch Domain Of Human Nedd9
Interacting Protein With Calponin Homology And Lim
Domains
Length = 116
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 133 GKKDVESAKKTLLRWVSNALPEH--IKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSK 190
G ++ LLRW + + VSD SW DG A +++ +Q L++ L
Sbjct: 1 GSSGSSGTQEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLEPSELQG 60
Query: 191 QTNRHRLDTAFNVAESNLGIARLLDPEV 218
A VAE+ LGI ++ +
Sbjct: 61 LGALEATAWALKVAENELGITPVVSAQA 88
>pdb|3BYH|B Chain B, Model Of Actin-Fimbrin Abd2 Complex
Length = 231
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Query: 13 WINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRN--LRRP-HFLSNA 69
WINS + ++++ ED+++G LL +L+ +S + + ++ P + N
Sbjct: 14 WINSLGIDSY----VNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENC 69
Query: 70 NTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIE 113
N ++ + + LVN+ +D+V G ++LGL+W ++ + ++
Sbjct: 70 NQVIKIGKQLKFSLVNVAGNDIVQGNKKLILGLLWQLMRFHMLQ 113
>pdb|2DK9|A Chain A, Solution Structure Of Calponin Homology Domain Of Human
Mical-1
Length = 118
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 141 KKTLLRWVSNALPEH--IKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHRLD 198
++ LLRW + + VSD SW DG A +++ +Q L++ L
Sbjct: 15 QEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLEPSELQGLGALEATA 74
Query: 199 TAFNVAESNLGI 210
A VAE+ LGI
Sbjct: 75 WALKVAENELGI 86
>pdb|4DO3|A Chain A, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
pdb|4DO3|B Chain B, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
Length = 571
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 127 YTSPEPG--------KKDVESAKKTLLRWVSNALPEHIKVSDFGPSWRDGHAFLSVIDNI 178
YT P P K+ +E+A TL+ ++ N +P ++V G + DG S + N
Sbjct: 325 YTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPYALEVLSAGGLFSDGGR--SFLQNF 382
Query: 179 QKDLVDIPALS 189
+ D VD P L
Sbjct: 383 KGDFVD-PCLG 392
>pdb|1MT5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|C Chain C, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|D Chain D, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|E Chain E, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|F Chain F, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|G Chain G, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|H Chain H, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|I Chain I, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|J Chain J, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|K Chain K, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|L Chain L, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|M Chain M, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|N Chain N, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|O Chain O, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|P Chain P, Crystal Structure Of Fatty Acid Amide Hydrolase
Length = 537
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 127 YTSPEPG--------KKDVESAKKTLLRWVSNALPEHIKVSDFGPSWRDGHAFLSVIDNI 178
YT P P K+ +E+A TL+ ++ N +P ++V G + DG S + N
Sbjct: 299 YTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPYALEVLSAGGLFSDGGR--SFLQNF 356
Query: 179 QKDLVDIPALS 189
+ D VD P L
Sbjct: 357 KGDFVD-PCLG 366
>pdb|2WAP|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
pdb|2WAP|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
Length = 543
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 127 YTSPEPG--------KKDVESAKKTLLRWVSNALPEHIKVSDFGPSWRDGHAFLSVIDNI 178
YT P P K+ +E+A TL+ ++ N +P ++V G + DG S + N
Sbjct: 305 YTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPYALEVLSTGGLFSDGGR--SFLQNF 362
Query: 179 QKDLVDIPALS 189
+ D VD P L
Sbjct: 363 KGDFVD-PCLG 372
>pdb|4HBP|A Chain A, Crystal Structure Of Faah In Complex With Inhibitor
pdb|4HBP|B Chain B, Crystal Structure Of Faah In Complex With Inhibitor
Length = 550
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 127 YTSPEPG--------KKDVESAKKTLLRWVSNALPEHIKVSDFGPSWRDGHAFLSVIDNI 178
YT P P K+ +E+A TL+ ++ N +P ++V G + DG S + N
Sbjct: 306 YTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPYALEVLSAGGLFSDGGR--SFLQNF 363
Query: 179 QKDLVDIPALS 189
+ D VD P L
Sbjct: 364 KGDFVD-PCLG 373
>pdb|2WJ1|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ1|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|3K7F|A Chain A, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K7F|B Chain B, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K83|A Chain A, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K83|B Chain B, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|A Chain A, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|B Chain B, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3LJ6|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ6|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ7|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3LJ7|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3OJ8|A Chain A, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3OJ8|B Chain B, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3PPM|A Chain A, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PPM|B Chain B, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|A Chain A, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|B Chain B, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
Length = 573
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 127 YTSPEPG--------KKDVESAKKTLLRWVSNALPEHIKVSDFGPSWRDGHAFLSVIDNI 178
YT P P K+ +E+A TL+ ++ N +P ++V G + DG S + N
Sbjct: 329 YTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPYALEVLSTGGLFSDGGR--SFLQNF 386
Query: 179 QKDLVDIPALS 189
+ D VD P L
Sbjct: 387 KGDFVD-PCLG 396
>pdb|3QK5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QK5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ8|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ8|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ9|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ9|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QKV|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
pdb|3QKV|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
Length = 587
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 127 YTSPEPG--------KKDVESAKKTLLRWVSNALPEHIKVSDFGPSWRDGHAFLSVIDNI 178
YT P P K+ +E+A TL+ ++ N +P ++V G + DG S + N
Sbjct: 343 YTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPYALEVLSAGGLFSDGGR--SFLQNF 400
Query: 179 QKDLVDIPALS 189
+ D VD P L
Sbjct: 401 KGDFVD-PCLG 410
>pdb|2VYA|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
pdb|2VYA|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
Length = 587
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 127 YTSPEPG--------KKDVESAKKTLLRWVSNALPEHIKVSDFGPSWRDGHAFLSVIDNI 178
YT P P K+ +E+A TL+ ++ N +P ++V G + DG S + N
Sbjct: 343 YTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPYALEVLSTGGLFSDGGR--SFLQNF 400
Query: 179 QKDLVDIPALS 189
+ D VD P L
Sbjct: 401 KGDFVD-PCLG 410
>pdb|2IK1|A Chain A, Yeast Inorganic Pyrophosphatase Variant Y93f With
Magnesium And Phosphate
pdb|2IK1|B Chain B, Yeast Inorganic Pyrophosphatase Variant Y93f With
Magnesium And Phosphate
Length = 286
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 14/86 (16%)
Query: 137 VESAKKTLLRWVSNALPEHIKVSDFGP---SWRDGHA----FLSVIDNIQKDLVDIPALS 189
++ KK LR+V N P H + +FG +W D + +V DN D+++I
Sbjct: 69 IQDTKKGKLRFVRNCFPHHGYIHNFGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETI 128
Query: 190 KQTNRHRLDTAFNVAESNLGIARLLD 215
T + + A LGI LLD
Sbjct: 129 AYTGQVKQVKA-------LGIMALLD 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,574,075
Number of Sequences: 62578
Number of extensions: 253664
Number of successful extensions: 702
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 599
Number of HSP's gapped (non-prelim): 55
length of query: 228
length of database: 14,973,337
effective HSP length: 95
effective length of query: 133
effective length of database: 9,028,427
effective search space: 1200780791
effective search space used: 1200780791
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)