Query psy7817
Match_columns 228
No_of_seqs 150 out of 1429
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 19:41:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7817.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7817hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b7l_A Filamin-B; structural p 100.0 8.8E-57 3E-61 391.2 16.6 214 1-227 13-228 (347)
2 3hoc_A Filamin-A; calponin hom 100.0 1.2E-56 4.1E-61 377.4 15.2 214 1-227 43-258 (272)
3 2wa7_A Filamin-B; disease muta 100.0 3.7E-55 1.3E-59 365.0 16.7 214 1-227 16-231 (245)
4 3f7p_A Plectin-1; plakin, hemi 100.0 1.8E-55 6.2E-60 373.7 13.8 209 1-227 69-279 (296)
5 1wku_A Alpha-actinin 3; calpon 100.0 4.2E-54 1.4E-58 360.1 15.4 206 1-227 23-231 (254)
6 1sh5_A Plectin 1, PLTN, PCN; a 100.0 5.7E-54 2E-58 358.0 13.7 211 1-227 8-223 (245)
7 1dxx_A Dystrophin; structural 100.0 1.4E-53 4.7E-58 355.8 11.9 212 1-227 12-226 (246)
8 1aoa_A T-fimbrin; actin-bindin 100.0 4.6E-50 1.6E-54 339.6 13.6 217 2-222 21-261 (275)
9 1sjj_A Actinin; 3-helix bundle 100.0 6.2E-48 2.1E-52 370.9 6.6 206 1-227 4-212 (863)
10 1rt8_A Fimbrin; filamentous ac 100.0 7.6E-46 2.6E-50 338.1 12.7 218 2-223 9-247 (513)
11 1pxy_A Fimbrin-like protein; c 100.0 1.1E-45 3.8E-50 336.6 13.5 205 1-222 272-487 (506)
12 1rt8_A Fimbrin; filamentous ac 100.0 2.7E-44 9.2E-49 327.8 15.1 203 3-224 283-500 (513)
13 1pxy_A Fimbrin-like protein; c 100.0 2.2E-44 7.4E-49 328.1 14.1 218 2-223 4-238 (506)
14 2vzc_A Alpha-parvin; membrane, 100.0 7.4E-33 2.5E-37 208.8 8.0 110 1-112 18-129 (131)
15 2yrn_A Neuron navigator 2 isof 100.0 3.6E-31 1.2E-35 199.6 8.3 113 1-113 14-126 (129)
16 1bkr_A Spectrin beta chain; fi 99.9 3.7E-28 1.3E-32 177.5 6.8 89 139-227 3-93 (109)
17 1wyl_A NEDD9 interacting prote 99.9 6.4E-28 2.2E-32 178.2 6.6 90 137-227 5-96 (116)
18 1wyq_A Spectrin beta chain, br 99.9 1.5E-27 5.2E-32 178.7 7.1 91 137-227 5-97 (127)
19 2d87_A Smoothelin splice isofo 99.9 3.6E-27 1.2E-31 176.8 8.9 91 137-227 5-98 (128)
20 1bhd_A Utrophin; calponin homo 99.9 6.2E-28 2.1E-32 178.7 4.2 92 136-227 5-98 (118)
21 2d88_A Protein mical-3; all al 99.9 1.9E-27 6.4E-32 176.9 5.7 92 136-227 6-100 (121)
22 2d89_A EHBP1 protein; all alph 99.9 1.5E-26 5.2E-31 171.5 5.6 91 136-227 6-99 (119)
23 1wjo_A T-plastin; CH domain, a 99.8 2.6E-21 8.9E-26 143.1 4.7 85 139-224 7-100 (124)
24 1wjo_A T-plastin; CH domain, a 99.7 1E-17 3.5E-22 123.8 5.4 105 5-110 7-114 (124)
25 1p2x_A RNG2 protein, RAS GTPas 99.5 1.2E-13 4.1E-18 107.0 8.5 141 8-162 14-157 (159)
26 1p5s_A RAS GTPase-activating-l 99.4 1.6E-12 5.5E-17 104.3 10.2 143 7-163 57-202 (203)
27 2d89_A EHBP1 protein; all alph 99.3 6.2E-12 2.1E-16 92.7 8.0 100 7-111 11-113 (119)
28 1wyl_A NEDD9 interacting prote 99.3 8E-12 2.7E-16 91.7 6.5 100 7-111 9-110 (116)
29 1h67_A Calponin alpha; cytoske 99.2 1.1E-11 3.8E-16 89.9 6.6 94 7-105 5-100 (108)
30 1wyp_A Calponin 1; CH domain, 99.2 2.3E-11 7.7E-16 91.8 8.2 100 4-108 16-117 (136)
31 1ujo_A Transgelin; CH domain, 99.2 2.7E-11 9.4E-16 92.2 8.2 91 5-95 9-105 (144)
32 2d88_A Protein mical-3; all al 99.2 2.6E-11 8.7E-16 89.7 6.8 100 7-111 11-114 (121)
33 2d87_A Smoothelin splice isofo 99.2 3E-11 1E-15 90.1 7.1 100 7-111 9-112 (128)
34 1wyn_A Calponin-2; CH domain, 99.2 3.8E-11 1.3E-15 91.6 7.3 99 6-109 18-118 (146)
35 1wyr_A RHO guanine nucleotide 99.2 9.9E-11 3.4E-15 86.5 9.2 98 7-106 8-110 (121)
36 2vzc_A Alpha-parvin; membrane, 99.2 4.6E-11 1.6E-15 89.5 6.9 85 139-224 22-113 (131)
37 1wyq_A Spectrin beta chain, br 99.2 1.5E-10 5.2E-15 86.2 9.0 100 7-111 9-111 (127)
38 1bkr_A Spectrin beta chain; fi 99.1 7.1E-11 2.4E-15 85.7 6.8 100 7-111 5-107 (109)
39 1wym_A Transgelin-2; CH domain 99.1 9.6E-11 3.3E-15 90.2 7.5 90 5-95 17-112 (155)
40 1aoa_A T-fimbrin; actin-bindin 99.1 6.9E-11 2.4E-15 99.4 6.6 99 7-107 170-274 (275)
41 2l3g_A RHO guanine nucleotide 99.1 3.1E-10 1.1E-14 84.3 8.7 88 6-95 13-105 (126)
42 1bhd_A Utrophin; calponin homo 99.1 6E-11 2.1E-15 87.3 3.7 99 7-110 10-111 (118)
43 3i6x_A P195, RAS GTPase-activa 99.1 5.4E-10 1.8E-14 88.9 8.6 97 8-106 50-157 (193)
44 2rr8_A Iqgap1 protein; F-actin 99.0 3E-10 1E-14 90.3 6.3 86 8-95 28-123 (190)
45 1wku_A Alpha-actinin 3; calpon 99.0 9.3E-10 3.2E-14 91.4 7.6 102 6-112 141-246 (254)
46 1dxx_A Dystrophin; structural 99.0 3.2E-10 1.1E-14 93.8 3.9 100 7-110 137-239 (246)
47 1sh5_A Plectin 1, PLTN, PCN; a 98.9 4E-10 1.4E-14 93.2 4.1 101 6-111 134-237 (245)
48 3f7p_A Plectin-1; plakin, hemi 98.9 7.6E-10 2.6E-14 93.7 4.3 100 6-110 190-292 (296)
49 2wa7_A Filamin-B; disease muta 98.8 5.1E-09 1.7E-13 86.5 6.9 93 7-106 145-240 (245)
50 2qjz_A Microtubule-associated 98.8 1.3E-08 4.4E-13 74.9 8.1 99 7-112 7-107 (123)
51 2yrn_A Neuron navigator 2 isof 98.8 1.5E-09 5.2E-14 81.0 3.1 87 137-224 16-109 (129)
52 3hoc_A Filamin-A; calponin hom 98.8 7.6E-09 2.6E-13 86.6 6.1 91 7-104 172-265 (272)
53 1wyo_A Protein EB3, microtubul 98.8 1.9E-08 6.5E-13 77.0 7.6 100 6-112 23-124 (159)
54 4b7l_A Filamin-B; structural p 98.7 2.1E-08 7.2E-13 86.8 6.0 95 7-108 142-239 (347)
55 1sjj_A Actinin; 3-helix bundle 98.4 3.9E-08 1.3E-12 94.4 1.6 100 7-111 123-226 (863)
56 2qjz_A Microtubule-associated 98.3 1.8E-06 6.1E-11 63.4 6.8 80 140-223 6-90 (123)
57 1wyo_A Protein EB3, microtubul 98.2 2.5E-06 8.6E-11 65.2 7.1 81 139-223 22-107 (159)
58 1ujo_A Transgelin; CH domain, 98.1 5.4E-06 1.8E-10 62.8 6.0 83 138-222 8-104 (144)
59 1h67_A Calponin alpha; cytoske 98.0 2.2E-06 7.4E-11 61.8 2.4 78 141-222 5-88 (108)
60 1wyp_A Calponin 1; CH domain, 98.0 1.9E-05 6.4E-10 59.2 7.6 80 139-222 17-102 (136)
61 1wyn_A Calponin-2; CH domain, 97.9 1.8E-05 6E-10 60.0 6.2 80 139-222 17-102 (146)
62 1wym_A Transgelin-2; CH domain 97.9 9.2E-06 3.1E-10 62.2 4.6 81 139-222 17-111 (155)
63 1p2x_A RNG2 protein, RAS GTPas 97.9 2.1E-05 7.1E-10 60.5 6.5 82 140-222 12-99 (159)
64 4abo_I MAL3, microtubule integ 97.9 5.3E-05 1.8E-09 56.7 8.3 99 7-113 8-108 (145)
65 2ee7_A Sperm flagellar protein 97.9 3E-05 1E-09 57.2 6.5 104 4-111 14-119 (127)
66 1p5s_A RAS GTPase-activating-l 97.9 1.9E-05 6.4E-10 63.1 5.8 82 140-222 56-143 (203)
67 3ky9_A Proto-oncogene VAV; cal 97.8 2.7E-05 9.2E-10 71.8 7.0 98 9-106 9-118 (587)
68 3i6x_A P195, RAS GTPase-activa 97.8 1.4E-05 4.8E-10 63.3 4.1 82 140-222 48-144 (193)
69 2rr8_A Iqgap1 protein; F-actin 97.8 1.6E-05 5.6E-10 62.8 4.1 82 140-222 26-122 (190)
70 2r8u_A Microtubule-associated 97.7 0.00013 4.6E-09 60.1 9.1 99 7-112 17-117 (268)
71 2qjx_A Protein BIM1; calponin 97.6 0.00037 1.3E-08 51.2 8.3 99 6-112 11-111 (127)
72 2ee7_A Sperm flagellar protein 97.5 0.00014 4.7E-09 53.6 5.8 79 139-220 15-97 (127)
73 1wyr_A RHO guanine nucleotide 97.5 8.4E-05 2.9E-09 54.5 4.1 80 139-222 6-97 (121)
74 2l3g_A RHO guanine nucleotide 97.5 0.00011 3.9E-09 54.1 4.8 81 139-222 12-104 (126)
75 2r8u_A Microtubule-associated 97.4 0.00033 1.1E-08 57.8 7.4 80 139-223 15-100 (268)
76 4abo_I MAL3, microtubule integ 97.3 0.00079 2.7E-08 50.3 6.9 78 140-223 7-90 (145)
77 2qjx_A Protein BIM1; calponin 96.9 0.0026 8.8E-08 46.7 6.4 78 140-223 11-94 (127)
78 3ky9_A Proto-oncogene VAV; cal 95.9 0.0036 1.2E-07 57.6 2.9 79 143-221 9-104 (587)
79 1wix_A HOOK homolog 1, RSGI RU 94.9 0.14 4.9E-06 39.1 8.5 68 6-78 10-83 (164)
80 1wix_A HOOK homolog 1, RSGI RU 94.5 0.027 9.2E-07 43.2 3.5 45 138-184 8-52 (164)
81 3lhk_A Putative DNA binding pr 35.3 39 0.0013 24.7 3.9 95 4-107 21-120 (154)
82 3g13_A Putative conjugative tr 21.0 87 0.003 22.8 3.6 79 4-87 26-112 (169)
No 1
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=100.00 E-value=8.8e-57 Score=391.19 Aligned_cols=214 Identities=32% Similarity=0.547 Sum_probs=189.7
Q ss_pred ChHHHHHHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCc-CCCCCCccchhhhHHHHHHHHHhC
Q psy7817 1 EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVE-KGRNLRRPHFLSNANTALQFLQSK 79 (228)
Q Consensus 1 ~~~~~q~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~-~~~~~~~~~~i~N~~~~l~~~~~~ 79 (228)
|||++|++|||+|||++|.+.. ..|+||++||+||++|++|+|.|++++++.. ..++.+++|+++|++.||+|+++.
T Consensus 13 ~we~iQ~ktFt~WiN~~L~~~~--~~V~dL~~Dl~DG~~L~~Lle~ls~~~l~~~~~~~p~~r~~k~eNv~~al~~~~~~ 90 (347)
T 4b7l_A 13 PWKKIQQNTFTRWCNEHLKSVN--KRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDRE 90 (347)
T ss_dssp CHHHHHHHHHHHHHHHHHGGGT--CCCSCTTTTTTTSHHHHHHHHHHHTCCCSSCCCSSCCSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhCcCC--CCcCCHHHHhcCHHHHHHHHHHHcCCccChhhcCCcccHHHHHHHHHHHHHHHHHh
Confidence 6999999999999999998763 4699999999999999999999999998753 345667999999999999999999
Q ss_pred CceeeecCCCCccCCchhHHHHHHHHHHHHhhhhhhhHHHHhhccCCCCCCCCCCcccccHHHHHHHHHHhhCCCCccee
Q psy7817 80 RIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRALAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEHIKVS 159 (228)
Q Consensus 80 g~~~~~i~~~di~~g~~~~iL~llw~li~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~Wv~~~l~~~~~I~ 159 (228)
|+++++|+++||++|++++||||+|+||+||+++... ..++ ........++++.||+|||+++.. +.|+
T Consensus 91 g~~lv~i~~~DIvdGn~~liLgLiW~li~~~~i~~~~-------~~~~---~~~~~~~~~~k~~LL~W~~~~~~~-~~v~ 159 (347)
T 4b7l_A 91 SIKLVSIDSKAIVDGNLKLILGLVWTLILHYSISMPV-------WEDE---GDDDAKKQTPKQRLLGWIQNKIPY-LPIT 159 (347)
T ss_dssp TCCCSSCCHHHHHTTCHHHHHHHHHHHHHHHHTTSSC-------CC----------CCCCHHHHHHHHHHHHCTT-SCCC
T ss_pred ccccCCCCcchhhcCCHhhHHHHHHHHHHHHhhhhhh-------cccc---cchhhhhhhHHHHHHHHHHhhCCC-cccC
Confidence 9999999999999999999999999999999997421 1111 122234568999999999999877 7999
Q ss_pred cCCCCCcchhhHHHHHHHhcCCCC-CCcccCcCCHHHHHHHHHHHHHhcCCCCCCCChhhhcccCCCCC
Q psy7817 160 DFGPSWRDGHAFLSVIDNIQKDLV-DIPALSKQTNRHRLDTAFNVAESNLGIARLLDPEVRQFLFLHVK 227 (228)
Q Consensus 160 nf~~s~~DG~~l~~Li~~~~p~~~-~~~~~~~~~~~~n~~~a~~~A~~~lgip~ll~p~Di~~~~~~~~ 227 (228)
||++||+||+|||+|||+|+|+.+ |++.+...+..+|+++||+.|+++||||++|+||||+...+|+|
T Consensus 160 nF~~sw~DG~af~aLi~~~~P~~~~d~~~l~~~~~~~n~~~Af~~Ae~~lGip~ll~peDi~~~~pDek 228 (347)
T 4b7l_A 160 NFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDNAREAMQQADDWLGVPQVITPEEIIHPDVDEH 228 (347)
T ss_dssp CSSGGGTTSHHHHHHHHHHSTTSSTTGGGSCTTCHHHHHHHHHHHHHHHHCCCCSSCHHHHTCTTCCHH
T ss_pred CCCCCccchHHHHHHHHHhCCccccchhhcCcCCHHHHHHHHHHHHHHhcCCCcccCHHHcCCCCCChh
Confidence 999999999999999999999998 89999999999999999999998899999999999999888865
No 2
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=100.00 E-value=1.2e-56 Score=377.37 Aligned_cols=214 Identities=32% Similarity=0.539 Sum_probs=187.3
Q ss_pred ChHHHHHHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCC-CCcCCCCCCccchhhhHHHHHHHHHhC
Q psy7817 1 EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKL-PVEKGRNLRRPHFLSNANTALQFLQSK 79 (228)
Q Consensus 1 ~~~~~q~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~-~~~~~~~~~~~~~i~N~~~~l~~~~~~ 79 (228)
+|+.+|+++|++|||++|.+. +..|+||++||+||++||+|+|+|+|+.+ +....+|..++++++||+.||+|++..
T Consensus 43 ~w~~vQkktft~WiN~~L~~~--~~~V~dL~~DL~DGv~L~~Lle~Ls~~~l~~~~~~~p~~r~~kleNv~~aL~~lk~~ 120 (272)
T 3hoc_A 43 PWKKIQQNTFTRWCNEHLKCV--SKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQLENVSVALEFLDRE 120 (272)
T ss_dssp GGGGHHHHHHHHHHHHHHGGG--TCCCSCTTTTTTTSHHHHHHHHHHHTSCCSSCCCSSCCSHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhccC--CCCcccHHHHHhhHHHHHHHHHHHcCCccccccCCCCccHHHHHHHHHHHHHHHHHc
Confidence 589999999999999999765 45699999999999999999999999988 444455667899999999999999999
Q ss_pred CceeeecCCCCccCCchhHHHHHHHHHHHHhhhhhhhHHHHhhccCCCCCCCCCCcccccHHHHHHHHHHhhCCCCccee
Q psy7817 80 RIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRALAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEHIKVS 159 (228)
Q Consensus 80 g~~~~~i~~~di~~g~~~~iL~llw~li~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~Wv~~~l~~~~~I~ 159 (228)
|+++++|+++||++|++++||||+|+||++|+++.... .++. .......++++.||+|||++++. ++|+
T Consensus 121 gv~lvnI~~~DIvdGn~kliLgLlW~Li~~~~i~~l~~-------~~e~---~~~~~~~s~k~~LL~W~n~~~~~-~~I~ 189 (272)
T 3hoc_A 121 SIKLVSIDSKAIVDGNLKLILGLIWTLILHYSISMPMW-------DEEE---DEEAKKQTPKQRLLGWIQNKLPQ-LPIT 189 (272)
T ss_dssp TCCCSSCCHHHHHTTCHHHHHHHHHHHHHHHHTTCC----------------------CCHHHHHHHHHHHHCTT-SCCC
T ss_pred CCcccccccchhhcCCHHHHHHHHHHHHHHHhhhhhhc-------cccc---cccccccCHHHHHHHHHHhhCCC-CCCC
Confidence 99999999999999999999999999999999974211 1110 11234467899999999999876 7999
Q ss_pred cCCCCCcchhhHHHHHHHhcCCCC-CCcccCcCCHHHHHHHHHHHHHhcCCCCCCCChhhhcccCCCCC
Q psy7817 160 DFGPSWRDGHAFLSVIDNIQKDLV-DIPALSKQTNRHRLDTAFNVAESNLGIARLLDPEVRQFLFLHVK 227 (228)
Q Consensus 160 nf~~s~~DG~~l~~Li~~~~p~~~-~~~~~~~~~~~~n~~~a~~~A~~~lgip~ll~p~Di~~~~~~~~ 227 (228)
||++||+||++||+|||+++|+++ |++.+...++.+|+++||+.|++++|||++|+||||+...+|.|
T Consensus 190 nFs~sw~DG~af~aLi~~~~P~li~d~~~l~~~~~~~n~~~Af~~Ae~~lGi~~ll~peDiv~~~pD~k 258 (272)
T 3hoc_A 190 NFSRDWQSGRALGALVDSCAPGLCPDWDSWDASKPVTNAREAMQQADDWLGIPQVITPEEIVDPNVDKH 258 (272)
T ss_dssp CSSGGGTTSHHHHHHHHHHSTTSSTTGGGSCTTCHHHHHHHHHHHHHHHHCCCCSSCHHHHTCTTCCHH
T ss_pred ChhhcccchHHHHHHHHHhCcccccchhhcCccCHHHHHHHHHHHHHHhCCCCccCCHHHhccCCCChH
Confidence 999999999999999999999999 89999999999999999999998899999999999999888865
No 3
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=100.00 E-value=3.7e-55 Score=364.96 Aligned_cols=214 Identities=32% Similarity=0.533 Sum_probs=187.9
Q ss_pred ChHHHHHHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCC-CCcCCCCCCccchhhhHHHHHHHHHhC
Q psy7817 1 EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKL-PVEKGRNLRRPHFLSNANTALQFLQSK 79 (228)
Q Consensus 1 ~~~~~q~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~-~~~~~~~~~~~~~i~N~~~~l~~~~~~ 79 (228)
+|+.+|+++|++|||++|.+. +..|+||++||+||++||+|+|.++++.+ +....++..++++++|++.||+|++..
T Consensus 16 ~~~~~q~~~f~~WiN~~L~~~--~~~v~dl~~dL~DGv~L~~Lle~L~~~~~~~~~n~~~~~~~~~~eNv~~aL~~~k~~ 93 (245)
T 2wa7_A 16 PWKKIQQNTFTRWCNEHLKCV--NKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDRE 93 (245)
T ss_dssp GGGGHHHHHHHHHHHHHHGGG--TCCCSCTTTTTTTSHHHHHHHHHHHTCCCSSCCCSSCCSHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhcccc--CCCccCHHHHcccHHHHHHHHHHHcCCCCchhcCCCCCcHHHHHHHHHHHHHHHHHc
Confidence 589999999999999999765 34689999999999999999999999988 333445567899999999999999999
Q ss_pred CceeeecCCCCccCCchhHHHHHHHHHHHHhhhhhhhHHHHhhccCCCCCCCCCCcccccHHHHHHHHHHhhCCCCccee
Q psy7817 80 RIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRALAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEHIKVS 159 (228)
Q Consensus 80 g~~~~~i~~~di~~g~~~~iL~llw~li~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~Wv~~~l~~~~~I~ 159 (228)
|+++++|+++||++|++++||||+|+||++|+++.. ..++++ .......++++.|++|||+++++ ++|+
T Consensus 94 g~~lv~I~~~DIvdG~~kliLgLlW~li~~~~i~~~-------~~~~~~---~~~~~~~~~~~~LL~W~~~~~~~-~~v~ 162 (245)
T 2wa7_A 94 SIKLVSIDSKAIVDGNLKLILGLVWTLILHYSISMP-------VWEDEG---DDDAKKQTPKQRLLGWIQNKIPY-LPIT 162 (245)
T ss_dssp TCCCCSCCHHHHHTTCHHHHHHHHHHHHHHHHTTSS-------CCSSCC-------CCCCHHHHHHHHHHHHSTT-SCCC
T ss_pred CCcccCCCHHHhhCCCHHHHHHHHHHHHHHHccccc-------cccccc---ccccccccHHHHHHHHHHHhCCC-CCCC
Confidence 999999999999999999999999999999998631 111211 11234568899999999999987 7999
Q ss_pred cCCCCCcchhhHHHHHHHhcCCCC-CCcccCcCCHHHHHHHHHHHHHhcCCCCCCCChhhhcccCCCCC
Q psy7817 160 DFGPSWRDGHAFLSVIDNIQKDLV-DIPALSKQTNRHRLDTAFNVAESNLGIARLLDPEVRQFLFLHVK 227 (228)
Q Consensus 160 nf~~s~~DG~~l~~Li~~~~p~~~-~~~~~~~~~~~~n~~~a~~~A~~~lgip~ll~p~Di~~~~~~~~ 227 (228)
||++||+||++||+|+|+|+|+.+ |++.++..+..+|+++||+.|++++|||++++||||+...+|.|
T Consensus 163 nFs~s~~dG~a~~aLi~~~~P~~i~~~~~l~~~~~~~n~~~a~~~A~~~lGi~~~l~peDi~~~~~d~k 231 (245)
T 2wa7_A 163 NFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDNAREAVQQADDWLGVPQVITPEEIIHPDVDEH 231 (245)
T ss_dssp CSSGGGTTSHHHHHHHHHHSTTSSTTGGGSCTTCHHHHHHHHHHHHHHHSCCCCSSCHHHHTCTTCCHH
T ss_pred CCcccchhhHHHHHHHHHHCccccccccccCcccHHHHHHHHHHHHHHhCCCCccCCHHHhccCCCcHH
Confidence 999999999999999999999999 89999999999999999999998899999999999999888764
No 4
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=100.00 E-value=1.8e-55 Score=373.72 Aligned_cols=209 Identities=45% Similarity=0.727 Sum_probs=189.3
Q ss_pred ChHHHHHHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcCCCCCCccchhhhHHHHHHHHHhCC
Q psy7817 1 EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFLQSKR 80 (228)
Q Consensus 1 ~~~~~q~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~~~~~~i~N~~~~l~~~~~~g 80 (228)
||+.+|+++|++|||++|.+.. ..|+||++||+||++||+|+|+|+|+.++... +..++++++||+.||+|++..|
T Consensus 69 e~~~vQkktft~WINs~L~~~~--~~V~dL~~DL~DGvvL~~Lle~L~~~~l~~~~--~~~r~~kleNvn~aL~~lk~~g 144 (296)
T 3f7p_A 69 ERDRVQKKTFTKWVNKHLIKAQ--RHISDLYEDLRDGHNLISLLEVLSGDSLPREK--GRMRFHKLQNVQIALDYLRHRQ 144 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGT--CCCSCTTTTTTTSHHHHHHHHHHHCCCCCCCC--CSSHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcccCC--CCcccHHHHHhhHHHHHHHHHHhcCCcccccC--CcChhhhhhhHHHHHHHHHHhC
Confidence 6899999999999999997653 46899999999999999999999999998743 4468999999999999999999
Q ss_pred ceeeecCCCCccCCchhHHHHHHHHHHHHhhhhhhhHHHHhhccCCCCCCCCCCcccccHHHHHHHHHHhhCCCC--cce
Q psy7817 81 IKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRALAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEH--IKV 158 (228)
Q Consensus 81 ~~~~~i~~~di~~g~~~~iL~llw~li~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~Wv~~~l~~~--~~I 158 (228)
+++++|+++||++|++++||||+|+||++|+++... ..|. ....+++++||+|||.++..| ++|
T Consensus 145 v~lv~I~~~DIvdGn~kliLgLlW~Li~~~~i~~i~-------~~g~-------~~~~s~k~~LL~W~n~~~~~y~~v~I 210 (296)
T 3f7p_A 145 VKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQ-------VSGQ-------SEDMTAKEKLLLWSQRMVEGYQGLRC 210 (296)
T ss_dssp CCCTTCCHHHHHTTCHHHHHHHHHHHHHHHTTTTCC-------CSSC-------CTTSCHHHHHHHHHHHHTTTSTTCCC
T ss_pred ccccCCChhhhhccchHHHHHHHHHhhcccceeeee-------ccCC-------cccCCHHHHHHHHHHHHhcCCCCCcC
Confidence 999999999999999999999999999999997421 1111 234678999999999999987 899
Q ss_pred ecCCCCCcchhhHHHHHHHhcCCCCCCcccCcCCHHHHHHHHHHHHHhcCCCCCCCChhhhcccCCCCC
Q psy7817 159 SDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPEVRQFLFLHVK 227 (228)
Q Consensus 159 ~nf~~s~~DG~~l~~Li~~~~p~~~~~~~~~~~~~~~n~~~a~~~A~~~lgip~ll~p~Di~~~~~~~~ 227 (228)
+||++||+||++||+|||+|+|+++|++.+...+..+|+++||++|++++|||++|+||||+...+|.|
T Consensus 211 ~nFs~sw~DG~af~aLI~~~~P~lid~~~l~~~~~~~N~~~Af~~Ae~~LGi~~ll~pEDi~~~~pDek 279 (296)
T 3f7p_A 211 DNFTSSWRDGRLFNAIIHRHKPLLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEK 279 (296)
T ss_dssp CCSSGGGTTSHHHHHHHHHHCGGGCCHHHHTTSCHHHHHHHHHHHHHHHHCCCCCCCHHHHSSSSCCHH
T ss_pred CCccccccccHHHHHHHHHHCcCccCHHHcCcccHHHHHHHHHHHHHHhCCCCccCCHHHhcCCCCcHH
Confidence 999999999999999999999999999999999999999999999998999999999999998888764
No 5
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=100.00 E-value=4.2e-54 Score=360.08 Aligned_cols=206 Identities=40% Similarity=0.626 Sum_probs=186.9
Q ss_pred ChHHHHHHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcCCCCCCccchhhhHHHHHHHHHhCC
Q psy7817 1 EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFLQSKR 80 (228)
Q Consensus 1 ~~~~~q~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~~~~~~i~N~~~~l~~~~~~g 80 (228)
+|+.+|+++|++|||++|.+. +..|+||++||+||++||+|+|.++|+.++.. ..+..++++++|++.||+|++..|
T Consensus 23 ~~~~~q~~~f~~WiN~~L~~~--~~~v~~l~~dl~DGv~L~~Lle~l~~~~v~k~-~~~~~~~~~~eNi~~aL~~~k~~g 99 (254)
T 1wku_A 23 AWEKQQRKTFTAWCNSHLRKA--GTQIENIEEDFRNGLKLMLLLEVISGERLPRP-DKGKMRFHKIANVNKALDFIASKG 99 (254)
T ss_dssp CHHHHHHHHHHHHHHHHHGGG--TCCCSCTTTTTTTSHHHHHHHHHHHCSCCCCC-CSCCSHHHHHHHHHHHHHHHHTTT
T ss_pred cchHHHHHHHHHHHHHHcccc--CCCccCHHHHccCHHHHHHHHHHhCcCCCCCC-CCCccHHHHHHhHHHHHHHHHHcC
Confidence 589999999999999999765 34689999999999999999999999998764 234568999999999999999999
Q ss_pred ceeeecCCCCccCCchhHHHHHHHHHHHHhhhhhhhHHHHhhccCCCCCCCCCCcccccHHHHHHHHHHhhCCCC--cce
Q psy7817 81 IKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRALAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEH--IKV 158 (228)
Q Consensus 81 ~~~~~i~~~di~~g~~~~iL~llw~li~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~Wv~~~l~~~--~~I 158 (228)
+++++|+++||++|++++||||+|+||++|+++... .+..+++++|++|||.++..| ++|
T Consensus 100 v~lv~I~~~DIvdG~~kliLgLlW~li~~~~i~~i~------------------~~~~~~~~~LL~W~~~~~~~y~~v~v 161 (254)
T 1wku_A 100 VKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDIS------------------VEETSAKEGLLLWCQRKTAPYRNVNV 161 (254)
T ss_dssp CCCCSCCHHHHHHCCHHHHHHHHHHHHHHHHTTTCE------------------ETTEEHHHHHHHHHHHHHTTCTTCCC
T ss_pred CCccCCCHHHHhccchHHHHHHHHHHHHHHhhcccc------------------cccccHHHHHHHHHHHHccCCCCCcC
Confidence 999999999999999999999999999999996421 123578999999999999887 789
Q ss_pred ecCCCCCcchhhHHHHHHHhcCCCCCCcccCcCCHHHHHHHHHHHHHhcCCCCCCCChhhhccc-CCCCC
Q psy7817 159 SDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPEVRQFL-FLHVK 227 (228)
Q Consensus 159 ~nf~~s~~DG~~l~~Li~~~~p~~~~~~~~~~~~~~~n~~~a~~~A~~~lgip~ll~p~Di~~~-~~~~~ 227 (228)
+||++||+||++||+|||+|+|+.+|++.+...+..+|+++||+.|+++||||++|+|+||+.+ .||.|
T Consensus 162 ~nFs~s~~DG~a~~aLi~~~~P~~id~~~l~~~~~~~n~~~a~~~A~~~lGi~~~l~peDiv~~~~pD~k 231 (254)
T 1wku_A 162 QNFHTSWKDGLALCALIHRHRPDLIDYAKLRKDDPIGNLNTAFEVAEKYLDIPKMLDAEDIVNTPKPDEK 231 (254)
T ss_dssp CSSSGGGTTSHHHHHHHHHHCTTSCCGGGCCTTCHHHHHHHHHHHHHHHSCCCCCSCHHHHHHSSSCCHH
T ss_pred CCCccchhhHHHHHHHHHHHCCCcccccccCcCCHHHHHHHHHHHHHHHcCCCCcCCHHHHhccCCCcHH
Confidence 9999999999999999999999999999999999999999999999988999999999999875 46654
No 6
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=100.00 E-value=5.7e-54 Score=357.99 Aligned_cols=211 Identities=44% Similarity=0.719 Sum_probs=188.6
Q ss_pred ChHHHHHHHHHHHHHhhhccCC---CCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcCCCCCCccchhhhHHHHHHHHH
Q psy7817 1 EQERVQKKTFVNWINSYLSKRH---PPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFLQ 77 (228)
Q Consensus 1 ~~~~~q~~~~~~WiN~~L~~~~---~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~~~~~~i~N~~~~l~~~~ 77 (228)
||+.+|+++|++|||++|.++. .+..|+||++||+||++||+|+|.++|+.++.. ++.+++++++|++.||++++
T Consensus 8 e~~~~q~~~f~~WiN~~L~~~~~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~~~--~~~~~~~~~eNv~~aL~~~k 85 (245)
T 1sh5_A 8 ERDRVQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPRE--KGRMRFHKLQNVQIALDYLR 85 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSGGGCCCCSCTTTTTTTSHHHHHHHHHHHCCCCCCC--CCCSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccccccccCCCCccchHhhccCHHHHHHHHHHhcCccccCC--CCcchHHHHHhHHHHHHHHH
Confidence 5899999999999999997631 235689999999999999999999999998853 34468999999999999999
Q ss_pred hCCceeeecCCCCccCCchhHHHHHHHHHHHHhhhhhhhHHHHhhccCCCCCCCCCCcccccHHHHHHHHHHhhCCCC--
Q psy7817 78 SKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRALAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEH-- 155 (228)
Q Consensus 78 ~~g~~~~~i~~~di~~g~~~~iL~llw~li~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~Wv~~~l~~~-- 155 (228)
..|+++++|+++||++|++++||||+|+||++|+++... ..|+ ....+++++|++|||+++..|
T Consensus 86 ~~g~~l~~I~~~DIvdg~~k~iLgLlw~li~~~~i~~i~-------~~g~-------~~~~~~~~~LL~W~~~~~~~~~~ 151 (245)
T 1sh5_A 86 HRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQ-------VSGQ-------SEDMTAKEKLLLWSQRMVEGYQG 151 (245)
T ss_dssp HTTCCCCSCCHHHHHTTCHHHHHHHHHHHHHHHTTTTCC-------CTTC-------CSSCCHHHHHHHHHHHHTTTSTT
T ss_pred HcCCcccCCChHhhhcccHHHHHHHHHHHHHhhcccccc-------cccc-------cccCCHHHHHHHHHHHHhccCCC
Confidence 999999999999999999999999999999999997421 1121 134578999999999999987
Q ss_pred cceecCCCCCcchhhHHHHHHHhcCCCCCCcccCcCCHHHHHHHHHHHHHhcCCCCCCCChhhhcccCCCCC
Q psy7817 156 IKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPEVRQFLFLHVK 227 (228)
Q Consensus 156 ~~I~nf~~s~~DG~~l~~Li~~~~p~~~~~~~~~~~~~~~n~~~a~~~A~~~lgip~ll~p~Di~~~~~~~~ 227 (228)
++|+||++||+||++||+|+|+|+|+.+|++.+...+..+|+++||+.|++++|||++++||||+...+|.|
T Consensus 152 ~~v~nF~~s~~DG~a~~aLi~~~~P~~i~~~~l~~~~~~~n~~~a~~~a~~~lGi~~~l~peDi~~~~pd~k 223 (245)
T 1sh5_A 152 LRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEK 223 (245)
T ss_dssp CCCCCSSGGGTTSHHHHHHHHTTCTTTCCHHHHHHSCHHHHHHHHHHHHHHHHCCCCCCCHHHHSSSSCCHH
T ss_pred cccCCccccccchHHHHHHHHHHCCCCCCHHHcccCCHHHHHHHHHHHHHHhCCCCccCCHHHhccCCCcHH
Confidence 899999999999999999999999999999999889999999999999998899999999999998888754
No 7
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=100.00 E-value=1.4e-53 Score=355.76 Aligned_cols=212 Identities=41% Similarity=0.677 Sum_probs=187.8
Q ss_pred ChHHHHHHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcCCCCCCccchhhhHHHHHHHHHhCC
Q psy7817 1 EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFLQSKR 80 (228)
Q Consensus 1 ~~~~~q~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~~~~~~i~N~~~~l~~~~~~g 80 (228)
||+.+|+++|++|||++|.+...+ .|+||++||+||++||+|+|.++|+.++.. ++.+++++++|++.||++++..|
T Consensus 12 e~~~~q~~~f~~WiN~~L~~~~~~-~v~dl~~dl~DG~~L~~Lle~l~~~~~~~~--~~~~~~~~~eNv~~aL~~~k~~g 88 (246)
T 1dxx_A 12 EREDVQKKTFTKWVNAQFSKFGKQ-HIENLFSDLQDGRRLLDLLEGLTGQKLPKE--KGSTRVHALNNVNKALRVLQNNN 88 (246)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTCC-CCSCTTTTTTTSHHHHHHHHHHHSCCCCCC--CCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhccccCCC-CccCHHHHhCcHHHHHHHHHHHcCCcCCCC--CCccHHHHHHHHHHHHHHHHHcC
Confidence 689999999999999999875422 589999999999999999999999988753 34568999999999999999999
Q ss_pred ceeeecCCCCccCCchhHHHHHHHHHHHHhhhhhhhHHHHhhccCCCCCCCCCCcccccHHHHHHHHHHhhCCCC--cce
Q psy7817 81 IKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRALAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEH--IKV 158 (228)
Q Consensus 81 ~~~~~i~~~di~~g~~~~iL~llw~li~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~Wv~~~l~~~--~~I 158 (228)
+++++|+++||++|++++||||+|+||++|++.....+.. .. ....++++.|++|||+++..| ++|
T Consensus 89 ~~l~~I~~~DIvdg~~~liL~Llw~li~~~~i~~~~~e~~--~~----------~~~~~~~~~LL~W~~~~~~~~~~~~i 156 (246)
T 1dxx_A 89 VDLVNIGSTDIVDGNHKLTLGLIWNIILHWQVKNVMKNIM--AG----------LQQTNSEKILLSWVRQSTRNYPQVNV 156 (246)
T ss_dssp CCCTTCCHHHHHTTCHHHHHHHHHHHHHHHTTTHHHHHHH--HH----------HTTCCHHHHHHHHHHHHHTTCTTCCC
T ss_pred CccccCCHHHhhcccHHHHHHHHHHHHHHHHHhhhhhhhh--hh----------cccccHHHHHHHHHHHHhccCCCCCc
Confidence 9999999999999999999999999999999975432211 00 012357899999999999887 899
Q ss_pred ecCCCCCcchhhHHHHHHHhcCCCCCCcccC-cCCHHHHHHHHHHHHHhcCCCCCCCChhhhcccCCCCC
Q psy7817 159 SDFGPSWRDGHAFLSVIDNIQKDLVDIPALS-KQTNRHRLDTAFNVAESNLGIARLLDPEVRQFLFLHVK 227 (228)
Q Consensus 159 ~nf~~s~~DG~~l~~Li~~~~p~~~~~~~~~-~~~~~~n~~~a~~~A~~~lgip~ll~p~Di~~~~~~~~ 227 (228)
+||++||+||++||+|+|+|.|+.+|++.+. ..+..+|+++||+.|++++|||++++|+||+...+|.|
T Consensus 157 ~nFs~s~~DG~a~~aLi~~~~P~li~~~~~~~~~~~~~n~~~a~~~A~~~lGi~~~l~peDi~~~~pD~k 226 (246)
T 1dxx_A 157 INFTTSWSDGLALNALIHSHRPDLFDWNSVVSQQSATQRLEHAFNIARYQLGIEKLLDPEDVDTTYPDKK 226 (246)
T ss_dssp CSSSGGGTTSHHHHHHHHHHCGGGSCHHHHHTCCCHHHHHHHHHHHHHHTTCCCCCCCHHHHSSSSCCHH
T ss_pred CCCcccchhHHHHHHHHHHHCcCccchhhhcccCCHHHHHHHHHHHHHHhCCCCccCCHHHhhcCCCcHH
Confidence 9999999999999999999999999999886 67899999999999998999999999999999888864
No 8
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=100.00 E-value=4.6e-50 Score=339.63 Aligned_cols=217 Identities=26% Similarity=0.412 Sum_probs=178.4
Q ss_pred hHHHHHHHHHHHHHhhhccCC-----CC--CCccchHHHhhhHHHHHHHHHHHcCCCCCCc--CCCCCCccchhhhHHHH
Q psy7817 2 QERVQKKTFVNWINSYLSKRH-----PP--LRIDDLTEDLKDGTKLLALLEVLSNEKLPVE--KGRNLRRPHFLSNANTA 72 (228)
Q Consensus 2 ~~~~q~~~~~~WiN~~L~~~~-----~~--~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~--~~~~~~~~~~i~N~~~~ 72 (228)
|+..|+++|++|||++|.+.. +| ..|+||++||+||++||+|+|.++|+.++.. ..++.+++++++|++.|
T Consensus 21 ~~~~q~~~f~~WiN~~L~~~~~~~~~~~i~~~v~dl~~dL~DGv~L~~Lle~l~~~~v~~~~i~~~~~~~~~~~eNv~~a 100 (275)
T 1aoa_A 21 YSEEEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFIIQENLNLA 100 (275)
T ss_dssp CCHHHHHHHHHHHHHHTTTCTTSTTTCSCCTTTTHHHHHGGGSHHHHHHHHHHSTTSSCGGGSCCSSCCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhccCccccccCCCCCccchHHHHhccHHHHHHHHHHhcCCCCCccccCCCCCCHHHHHHHHHHH
Confidence 678899999999999997631 22 3589999999999999999999999988732 23344578999999999
Q ss_pred HHHHHhCCceeeecCCCCccCCchhHHHHHHHHHHHHhhhhhhh----HHHHhhccCCCCCCCCCCcccccHHHHHHHHH
Q psy7817 73 LQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENT----RALAALSAEGYTSPEPGKKDVESAKKTLLRWV 148 (228)
Q Consensus 73 l~~~~~~g~~~~~i~~~di~~g~~~~iL~llw~li~~~~i~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~Wv 148 (228)
|++++..|+++++|+++||++|++++||||+|+||++|++.... +.+..+...++. .......++++.|++||
T Consensus 101 L~~~k~~g~~l~~I~~~DIvdg~~~liLgLlw~li~~~~~~~I~~~~~~~l~~ll~~ge~---~~~~~~~s~~~~LL~W~ 177 (275)
T 1aoa_A 101 LNSASAIGCHVVNIGAEDLRAGKPHLVLGLLWQIIKIGLFADIELSRNEALAALLRDGET---LEELMKLSPEELLLRWA 177 (275)
T ss_dssp HHHHHHTTCCCTTCCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSSCTTCC--------C---HHHHHTSCHHHHHHHHH
T ss_pred HHHHHHcCCcccCCCHHHHHcCcHHHHHHHHHHHHHHhhhcccccccChHHHHhhccCCc---hhhhhccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999876421 111111111110 01112357899999999
Q ss_pred HhhCCCC--cceecCCCCCcchhhHHHHHHHhcCC---------CCCCcccCcCCHHHHHHHHHHHHHhcCCCCCCCChh
Q psy7817 149 SNALPEH--IKVSDFGPSWRDGHAFLSVIDNIQKD---------LVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217 (228)
Q Consensus 149 ~~~l~~~--~~I~nf~~s~~DG~~l~~Li~~~~p~---------~~~~~~~~~~~~~~n~~~a~~~A~~~lgip~ll~p~ 217 (228)
|++++.+ .+|+||++||+||++||+|+|++.|+ .++++.+...+..+|+++||+.|+ ++|||++|+||
T Consensus 178 n~~l~~~g~~~I~nF~~s~~DG~a~~aLi~~~~P~~~~~~~~~l~~~~~~~~~~~~~~n~~~a~~~A~-~lGi~~~l~pe 256 (275)
T 1aoa_A 178 NFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQAD-KLGCRQFVTPA 256 (275)
T ss_dssp HHHHHHTTCCCCSCSSTTTTTSHHHHHHHHHHSCCSCSSSCCCCCCCCTTTTCSSHHHHHHHHHHHHT-TTTCCCSCCHH
T ss_pred HHHHHhcCCCcchhhhhhhhhhHHHHHHHHHHCCCccccccccccccccCCCccCHHHHHHHHHHHHH-HcCCCCcCCHH
Confidence 9988654 33999999999999999999999999 778999999999999999999999 89999999999
Q ss_pred hhccc
Q psy7817 218 VRQFL 222 (228)
Q Consensus 218 Di~~~ 222 (228)
||+..
T Consensus 257 Di~~~ 261 (275)
T 1aoa_A 257 DVVSG 261 (275)
T ss_dssp HHHTT
T ss_pred HcCCC
Confidence 99964
No 9
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=100.00 E-value=6.2e-48 Score=370.95 Aligned_cols=206 Identities=40% Similarity=0.623 Sum_probs=186.1
Q ss_pred ChHHHHHHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcCCCCCCccchhhhHHHHHHHHHhCC
Q psy7817 1 EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFLQSKR 80 (228)
Q Consensus 1 ~~~~~q~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~~~~~~i~N~~~~l~~~~~~g 80 (228)
+|+.+|+++|++|||++|.+.. ..|+||++||+||++||+|+|.++|++++... ++.+++++++||+.||+|++..|
T Consensus 4 ~~~~~q~~~f~~Win~~L~~~~--~~v~~l~~dl~DG~~L~~l~e~l~~~~~~~~~-~~~~~~~~~eN~~~~l~~~~~~g 80 (863)
T 1sjj_A 4 AWEKQQRKTFTAWCNSHLRKAG--TQIENIEEDFRDGLKLMLLLEVISGERLAKPE-RGKMRVHKISNVNKALDFIASKG 80 (863)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHC--SCCCCCSSTTSSCHHHHHHHHHTSCCCCCCSC-CCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhccCC--CCccCHHHHhcCHHHHHHHHHHhCCCceeCCC-CCccHHHHHHHHHHHHHHHHHcC
Confidence 5899999999999999997653 45899999999999999999999999987632 34568999999999999999999
Q ss_pred ceeeecCCCCccCCchhHHHHHHHHHHHHhhhhhhhHHHHhhccCCCCCCCCCCcccccHHHHHHHHHHhhCCCC--cce
Q psy7817 81 IKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRALAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEH--IKV 158 (228)
Q Consensus 81 ~~~~~i~~~di~~g~~~~iL~llw~li~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~Wv~~~l~~~--~~I 158 (228)
+++++|+|+||++|++++||||+|+||++|++.... ....++++.|++|||.++..| ++|
T Consensus 81 ~~~~~i~~~di~~g~~~~~l~l~w~l~~~~~~~~~~------------------~~~~~~~~~ll~W~~~~~~~~~~~~v 142 (863)
T 1sjj_A 81 VKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDIS------------------VEETSAKEGLLLWYQRKTAPYKNVNI 142 (863)
T ss_dssp CCCTTCCSHHHHTTCHHHHHHHHHHHHSCCCCCCCC------------------CCCCCSTTTTHHHHHHHHTTSTTCCC
T ss_pred CccCCCChHHhhcCCHHHHHHHHHHHHHHHhhcccc------------------hhccchHHHHHHHHHHhccCCCCCCC
Confidence 999999999999999999999999999999986421 012456789999999999887 889
Q ss_pred ecCCCCCcchhhHHHHHHHhcCCCCCCcccCcCCHHHHHHHHHHHHHhcCCCCCCCChhhhccc-CCCCC
Q psy7817 159 SDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPEVRQFL-FLHVK 227 (228)
Q Consensus 159 ~nf~~s~~DG~~l~~Li~~~~p~~~~~~~~~~~~~~~n~~~a~~~A~~~lgip~ll~p~Di~~~-~~~~~ 227 (228)
+||++||+||++||+|||.|.|+.+|++.+...++.+|+++||+.|++.+|||++|+|+||+.+ .||.|
T Consensus 143 ~nf~~s~~dg~~~~~li~~~~p~~~~~~~~~~~~~~~n~~~a~~~a~~~lg~~~~l~~ed~~~~~~pd~~ 212 (863)
T 1sjj_A 143 QNFHISWKDGLGFCALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEK 212 (863)
T ss_dssp CSSSGGGTTSHHHHHHHHTTCCSSSCSGGGGSCCCGGGCTHHHHHHHHHHCCCCSCCHHHHTTCSSCCHH
T ss_pred CCCccccccHHHHHHHHHHhCCCCcChhhCCCCCHHHHHHHHHHHHHHhCCCCCccCHHHHhCCCCCcHH
Confidence 9999999999999999999999999999999999999999999999988999999999999976 56654
No 10
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=100.00 E-value=7.6e-46 Score=338.06 Aligned_cols=218 Identities=22% Similarity=0.317 Sum_probs=179.6
Q ss_pred hHHHHHHHHHHHHHhhhccCC------C-CCCccchHHHhhhHHHHHHHHHHHcCCCCCCcC------CCCCCccchhhh
Q psy7817 2 QERVQKKTFVNWINSYLSKRH------P-PLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEK------GRNLRRPHFLSN 68 (228)
Q Consensus 2 ~~~~q~~~~~~WiN~~L~~~~------~-~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~------~~~~~~~~~i~N 68 (228)
|...|+++|++|||++|.+.. | +..++||++||+||++||+|+|.++|++++... .++.+++++++|
T Consensus 9 ~~~~q~~~f~~WIN~~L~~~~~~~~~lpi~~~v~dl~~dL~DG~~L~~Lie~l~~~~i~~~~i~~~~~~~~~~~~~~~eN 88 (513)
T 1rt8_A 9 INEEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIEN 88 (513)
T ss_dssp CCHHHHHHHHHHHHHHHTTCTTTGGGCSCCTTSTHHHHHTTTSHHHHHHHHHHSTTSSCGGGSCCCC---CCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccCCccccccCCCCCchHHHHHHhhcHHHHHHHHHHHcCCCcchhhcCCccccCcccHHHHHHH
Confidence 678899999999999997641 1 235789999999999999999999998875321 234668899999
Q ss_pred HHHHHHHHHhCCc-eeeecCCCCccCCchhHHHHHHHHHHHHhhhhhh----hHHHHhhccCCCCCCCCCCcccccHHHH
Q psy7817 69 ANTALQFLQSKRI-KLVNINSSDLVDGRPAVVLGLIWTIILYFQIEEN----TRALAALSAEGYTSPEPGKKDVESAKKT 143 (228)
Q Consensus 69 ~~~~l~~~~~~g~-~~~~i~~~di~~g~~~~iL~llw~li~~~~i~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 143 (228)
++.||++++..|+ ++++|+++||++|++++||||+|+||++|+++.. .+.+..+..+++. ..+....++++.
T Consensus 89 i~~~L~~~k~~g~~~l~~i~~~DI~dg~~~liLgLiW~li~~~~l~~i~~~~~pel~~l~~~~e~---~~~~~~~~~~~~ 165 (513)
T 1rt8_A 89 NNVVINSAKAMGGISITNIGAGDILEGREHLILGLVWQIIRRGLLGKIDITLHPELYRLLEEDET---LDQFLRLPPEKI 165 (513)
T ss_dssp HHHHHHHHHHHSSCCCSSCCHHHHHTTCHHHHHHHHHHHHHHHSSCCC----------------C---HHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCCCccCCcCHHhhhcCCHHHHHHHHHHHHHHhhhcccccccCHHHHhhhccCCc---hhhhhcCCHHHH
Confidence 9999999999999 9999999999999999999999999999998742 2233222222211 111234578999
Q ss_pred HHHHHHhhCCC--C-cceecCCCCCcchhhHHHHHHHhcCCCCCCcccCcCCHHHHHHHHHHHHHhcCCCCCCCChhhhc
Q psy7817 144 LLRWVSNALPE--H-IKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPEVRQ 220 (228)
Q Consensus 144 Ll~Wv~~~l~~--~-~~I~nf~~s~~DG~~l~~Li~~~~p~~~~~~~~~~~~~~~n~~~a~~~A~~~lgip~ll~p~Di~ 220 (228)
|++|||++++. | ++|+||++||+||++||+|+|++.|+.+|++.+...+..+|+++||+.|+ ++|||++|+|+||+
T Consensus 166 LL~W~n~~l~~~g~~~~V~nFs~s~~DG~a~~aLl~~~~P~~i~~~~l~~~~~~~n~~~a~~~a~-~lgi~~~l~peDi~ 244 (513)
T 1rt8_A 166 LLRWFNYHLKAANWPRTVSNFSKDVSDGENYTVLLNQLAPELCSRAPLQTTDVLQRAEQVLQNAE-KLDCRKYLTPTAMV 244 (513)
T ss_dssp HHHHHHHHHHHTTCSCCCSCSSGGGTTSHHHHHHHHHHCTTTCCSGGGGCCCHHHHHHHHHHHHH-TTTCCCSCCHHHHH
T ss_pred HHHHHHHHHHhcCCCcCcccchhhhhccHHHHHHHHHHCccccccCCCCccCHHHHHHHHHHHHH-HcCCCccCCHHHhc
Confidence 99999998854 4 88999999999999999999999999999999999999999999999999 59999999999999
Q ss_pred ccC
Q psy7817 221 FLF 223 (228)
Q Consensus 221 ~~~ 223 (228)
+.+
T Consensus 245 ~~~ 247 (513)
T 1rt8_A 245 AGN 247 (513)
T ss_dssp TTC
T ss_pred CCC
Confidence 753
No 11
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=100.00 E-value=1.1e-45 Score=336.56 Aligned_cols=205 Identities=21% Similarity=0.374 Sum_probs=173.5
Q ss_pred ChHHHHHHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcCC-C-C-CCccchhhhHHHHHHHHH
Q psy7817 1 EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKG-R-N-LRRPHFLSNANTALQFLQ 77 (228)
Q Consensus 1 ~~~~~q~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~-~-~-~~~~~~i~N~~~~l~~~~ 77 (228)
+|+.+|+++|++|||+++. +..|+||++||+||++||+|+|.++|+.+++... + + ..++|+++||+.||+|++
T Consensus 272 ~~~~~q~ktf~~WiN~~~~----~~~v~dl~~Dl~DG~~L~~Lle~l~~~~~~~~~~~~~~~~~r~~~leNv~~aL~~~k 347 (506)
T 1pxy_A 272 VETCRDERCYRLWINSLGI----DSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIGK 347 (506)
T ss_dssp CHHHHHHHHHHHHHTTTTC----SSCCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGCCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCC----CCCcccHHHHHHhHHHHHHHHHHHcCCccccccccCCccccHHHHHHHHHHHHHHHH
Confidence 5889999999999999972 3569999999999999999999999998875321 2 2 358999999999999999
Q ss_pred hCCceeeecCCCCccCCchhHHHHHHHHHHHHhhhhhhhHHHHhhccCCCCCCCCCCcccccHHHHHHHHHHhhCCCC--
Q psy7817 78 SKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRALAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEH-- 155 (228)
Q Consensus 78 ~~g~~~~~i~~~di~~g~~~~iL~llw~li~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~Wv~~~l~~~-- 155 (228)
..|+++++|+++||++|+.++||||+|+|+ ||++..... .+.... . .+...++.||+|||.++..+
T Consensus 348 ~~~v~l~~I~~~dIvdg~~kl~L~Liw~li-r~~i~~~~~---~l~~~~-------~-~~~~~~~~LL~W~~~~~~~~~~ 415 (506)
T 1pxy_A 348 QLKFSLVNVAGNDIVQGNKKLILGLLWQLM-RFHMLQLLK---SLRSRT-------L-GKEMTDADILSWANRKVRTMGR 415 (506)
T ss_dssp HTTCCCCSCCHHHHHTTCHHHHHHHHHHHH-HHHHHHHHH---TTCC-------------CCCHHHHHHHHHHHHHTTTC
T ss_pred HcCCcccCCCHHHHhcCCHHHHHHHHHHHH-HHhhHHHHH---Hhhccc-------c-cccccHHHHHHHHHHHhhhcCC
Confidence 999999999999999999999999999998 787754221 122100 0 01134689999999999753
Q ss_pred -cceecCC-CCCcchhhHHHHHHHhcCCCCCCcccCcC----CHHHHHHHHHHHHHhcCCCCCCCChhhhccc
Q psy7817 156 -IKVSDFG-PSWRDGHAFLSVIDNIQKDLVDIPALSKQ----TNRHRLDTAFNVAESNLGIARLLDPEVRQFL 222 (228)
Q Consensus 156 -~~I~nf~-~s~~DG~~l~~Li~~~~p~~~~~~~~~~~----~~~~n~~~a~~~A~~~lgip~ll~p~Di~~~ 222 (228)
++|+||+ +||+||+|||+|+|.|+|+.+|++.+... +..+|+++||+.|+ ++|||++++||||+..
T Consensus 416 ~~~i~nF~d~s~~dG~a~~aLi~~~~P~li~~~~l~~~~s~~~~~~N~~~a~~~a~-~lGi~~~l~peDi~~~ 487 (506)
T 1pxy_A 416 KLQIESFKDKSLSSGLFFLNLLWAVEPRVVNWNLVTKGETDDEKRLNATYIVSVAR-KLGCSVFLLPEDIVEV 487 (506)
T ss_dssp CCCCSSTTCGGGGGCHHHHHHHHHHCGGGCCTTSCCCSCSHHHHHHHHHHHHHHHH-HHTCCCCCCHHHHHTT
T ss_pred ccccCCCCcccccchHHHHHHHHhhCCCeeehhhcccCCCchhHHHHHHHHHHHHH-HcCCCCcCCHHHccCC
Confidence 8999999 89999999999999999999999999764 45789999999997 7999999999999964
No 12
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=100.00 E-value=2.7e-44 Score=327.83 Aligned_cols=203 Identities=23% Similarity=0.373 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcC--CCC-----CCccchhhhHHHHHHH
Q psy7817 3 ERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEK--GRN-----LRRPHFLSNANTALQF 75 (228)
Q Consensus 3 ~~~q~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~--~~~-----~~~~~~i~N~~~~l~~ 75 (228)
+++|+++|++|||++.. +..|+||++||+||++||+|+|++.++.+.+.+ ..| .+++++++||+.||++
T Consensus 283 ~~~q~k~f~~WiN~~~~----~~~v~~l~~DL~DG~~L~~Lle~l~~g~v~~~~~~~~p~~~~~~~r~~~~eNv~~al~~ 358 (513)
T 1rt8_A 283 GEREARVFTLWLNSLDV----TPSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDL 358 (513)
T ss_dssp HHHHHHHHHHHHHHTTC----SSCCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGSCCCCTTSCCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCC----CCCccCHHHHHhhHHHHHHHHHHhCCCCcchhhhcCCcccccccchHHHHHHHHHHHHH
Confidence 46899999999999952 336899999999999999999987777653321 112 4589999999999999
Q ss_pred HHhCCceeeecCCCCccCCchhHHHHHHHHHHHHhhhhhhhHHHHhhccCCCCCCCCCCcccccHHHHHHHHHHhhCCC-
Q psy7817 76 LQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRALAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPE- 154 (228)
Q Consensus 76 ~~~~g~~~~~i~~~di~~g~~~~iL~llw~li~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~Wv~~~l~~- 154 (228)
++..|+++++|+++||++|++++||||+|+||++|.+.. +..+...| +..+.+ .|++|||+++..
T Consensus 359 ~~~~gv~lv~i~~~DIvdg~~~~~LgLlW~li~~~~~~~----l~~l~~~~---------~~~~~~-~LL~W~~~~~~~~ 424 (513)
T 1rt8_A 359 GKNQGFSLVGIQGADITDGSRTLTLALVWQMMRMNITKT----LHSLSRGG---------KTLSDS-DMVAWANSMAAKG 424 (513)
T ss_dssp HHHTTCCCTTCCHHHHHTTCHHHHHHHHHHHHHHHHHHH----TTC---------------CCCHH-HHHHHHHHHHTTT
T ss_pred HHHcCceeeccchhhhhcCCchhhHHHHHHHHHHHHHHH----HHhhccCC---------CcCCHH-HHHHHHHHHhhcc
Confidence 999999999999999999999999999999998886543 11122111 123444 599999999975
Q ss_pred C--cceecCC-CCCcchhhHHHHHHHhcCCCCCCcccCcC----CHHHHHHHHHHHHHhcCCCCCCCChhhhcccCC
Q psy7817 155 H--IKVSDFG-PSWRDGHAFLSVIDNIQKDLVDIPALSKQ----TNRHRLDTAFNVAESNLGIARLLDPEVRQFLFL 224 (228)
Q Consensus 155 ~--~~I~nf~-~s~~DG~~l~~Li~~~~p~~~~~~~~~~~----~~~~n~~~a~~~A~~~lgip~ll~p~Di~~~~~ 224 (228)
| ++|+||+ +||+||+|||+|||+|+|+.+|++.+... +..+|+++||+.|+ ++|||++++||||+...+
T Consensus 425 ~~~~~i~nF~~~s~~dG~a~~aLi~~~~P~~i~~~~l~~~~~~~~~~~n~~~af~~A~-~lGi~~~l~peDi~~~~p 500 (513)
T 1rt8_A 425 GKGSQIRSFRDPSISTGVFVLDVLHGIKSEYVDYNLVTDGSTEELAIQNARLAISIAR-KLGAVIFILPEDIVAVRP 500 (513)
T ss_dssp CSSCCCSSTTCGGGGGSHHHHHHHHHHCGGGCCGGGCCCCCSHHHHHHHHHHHHHHHH-HTTCCCCCCHHHHHTTCH
T ss_pred CCCCCCCCCCcccccchHHHHHHHHHhCCCcCCHHhhccccChhhHHHHHHHHHHHHH-HcCCCccCCHHHhcCCCc
Confidence 4 8899999 89999999999999999999999998764 58899999999997 799999999999998753
No 13
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=100.00 E-value=2.2e-44 Score=328.09 Aligned_cols=218 Identities=25% Similarity=0.305 Sum_probs=177.4
Q ss_pred hHHHHHHHHHHHHHhhhccC-----CCC--CCccchHHHhhhHHHHHHHHHHHcCCCCCCcC---CCCCCccchhhhHHH
Q psy7817 2 QERVQKKTFVNWINSYLSKR-----HPP--LRIDDLTEDLKDGTKLLALLEVLSNEKLPVEK---GRNLRRPHFLSNANT 71 (228)
Q Consensus 2 ~~~~q~~~~~~WiN~~L~~~-----~~~--~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~---~~~~~~~~~i~N~~~ 71 (228)
|.+.|+++|++|||++|.++ ..| ..++||++||+||++||+|+|.+.|+.++... .+..+++++++|++.
T Consensus 4 ~~~~q~~~f~~WIN~~L~~~~~~~~~l~~~~~v~~l~~dL~DGv~L~~Lin~l~~~~i~~~~in~~~~~~~~~~~eNi~~ 83 (506)
T 1pxy_A 4 GIQSEKGPFVQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTL 83 (506)
T ss_dssp ---CTHHHHHHHHHHHHTTCTTTTTTCSCCTTSSHHHHHSTTSHHHHHHHHHHSTTSSCGGGSCCCSSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCccccccCCCCCchhHHHHHhcchHHHHHHHHHHcCCCCCccccCccccccHHHHHHHHHH
Confidence 56779999999999999875 112 24899999999999999999999999885332 222347899999999
Q ss_pred HHHHHHhCCceeeecCCCCccCCchhHHHHHHHHHHHHhhhhhh----hHHHHhhccCCCCCCCCCCcccccHHHHHHHH
Q psy7817 72 ALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEEN----TRALAALSAEGYTSPEPGKKDVESAKKTLLRW 147 (228)
Q Consensus 72 ~l~~~~~~g~~~~~i~~~di~~g~~~~iL~llw~li~~~~i~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~W 147 (228)
+|++++..|+++++|.++||++|+.+++|||+|+||++|+++.. .|.+..+...++. ..+....++++.|++|
T Consensus 84 ~L~~~k~~g~~~~~i~~~Dl~dg~~~liLgLiw~li~~~~l~~i~~~~~p~l~~l~~~~e~---~~~~~~~~~~~~LL~W 160 (506)
T 1pxy_A 84 CLNSAKAVGCSVVNIGTQDLAEGRPHLVLGLISQLIKIQLLADLNLKKTPQLVELLEDSDD---VEELLRLPPEKVLLKW 160 (506)
T ss_dssp HHHHHHHTTCCCTTCCHHHHHHTCHHHHHHHHHHHHHHHHHSSSSSCC--------------------CCSCHHHHHHHH
T ss_pred HHHHHHHhCCCcCCCCHHHHhcCChHHHHHHHHHHHHHHHHHhhhhccCHHHHHhhcCCcc---hhhhhcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999998742 3333333322221 2233456899999999
Q ss_pred HHhhCC--CC-cceecCCCCCcchhhHHHHHHHhcCCCCCCcccCcCCHHHHHHHHHHHHHhcCCCCCCCChhhhcccC
Q psy7817 148 VSNALP--EH-IKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPEVRQFLF 223 (228)
Q Consensus 148 v~~~l~--~~-~~I~nf~~s~~DG~~l~~Li~~~~p~~~~~~~~~~~~~~~n~~~a~~~A~~~lgip~ll~p~Di~~~~ 223 (228)
||.+++ +| ++|+||++||+||++||+|+|++.|+.+|++.+...+..+|+++||+.|+ ++|||++++|+||++..
T Consensus 161 ~n~~l~~~g~~~~v~nFs~s~~DG~a~~~Ll~~~~P~~i~~~~l~~~~~~~n~~~a~~~a~-~lGi~~~l~peDi~~~~ 238 (506)
T 1pxy_A 161 MNFHLKKGGYKKTVSNFSADLKDAQAYAFLLNVLAPEHCDPATLDAKDPLERAELVLSHAE-RMNCKRYLTAEEIVEGS 238 (506)
T ss_dssp HHHHHHHTTCCSCCCCSSTTTTTSHHHHHHHHHHCGGGCCGGGGGCCSHHHHHHHHHHHHH-HTTCCCCCCHHHHHTTC
T ss_pred HHHHHHhcCCCccCccccccccchHHHHHHHHHhCccccccccCCcCCHHHHHHHHHHHHH-HcCCCCcCCHHHHhcCC
Confidence 999876 34 78999999999999999999999999999999999999999999999999 69999999999999764
No 14
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Probab=99.98 E-value=7.4e-33 Score=208.78 Aligned_cols=110 Identities=19% Similarity=0.298 Sum_probs=100.8
Q ss_pred ChHHHHHHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCc--CCCCCCccchhhhHHHHHHHHHh
Q psy7817 1 EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVE--KGRNLRRPHFLSNANTALQFLQS 78 (228)
Q Consensus 1 ~~~~~q~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~--~~~~~~~~~~i~N~~~~l~~~~~ 78 (228)
|++.+|+++|++|||++|.+. +..|+||++||+||++|++|+|.++|+.+|.. ..+|.+++|+++|++.||+|+++
T Consensus 18 e~~~~q~ktft~WiN~~L~~~--~~~v~dL~~Dl~DGv~L~~Lle~ls~~~~~~~~~~~~p~~r~~kieNv~~aL~~lk~ 95 (131)
T 2vzc_A 18 DKLNVVKKTLITFVNKHLNKL--NLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVLNVSFAFELMQD 95 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHGGG--TCCCCCTTTTTTTSHHHHHHHHHHTTCCCCTTSSCSSCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHc--CCcccCHHHHcccHHHHHHHHHHhcCCCCCHHHhcCCCCcHHHHHHHHHHHHHHHHH
Confidence 466799999999999999876 45799999999999999999999999988743 34567799999999999999999
Q ss_pred CCceeeecCCCCccCCchhHHHHHHHHHHHHhhh
Q psy7817 79 KRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQI 112 (228)
Q Consensus 79 ~g~~~~~i~~~di~~g~~~~iL~llw~li~~~~i 112 (228)
.|+++++|+|+||++|++++||||+|+||++|+.
T Consensus 96 ~gi~l~~I~~~DIvdGn~kliLgLiW~li~~~~~ 129 (131)
T 2vzc_A 96 GGLEKPKPRPEDIVNCDLKSTLRVLYNLFTKYRN 129 (131)
T ss_dssp TTCCCCSSCHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred cCCCcCCCCHHHhhCCCHHhHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999985
No 15
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.97 E-value=3.6e-31 Score=199.61 Aligned_cols=113 Identities=28% Similarity=0.525 Sum_probs=103.7
Q ss_pred ChHHHHHHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcCCCCCCccchhhhHHHHHHHHHhCC
Q psy7817 1 EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFLQSKR 80 (228)
Q Consensus 1 ~~~~~q~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~~~~~~i~N~~~~l~~~~~~g 80 (228)
+|+..|+++|++|||++|.+..++..|+||++||+||++||+|+|.|+|+.++....+|.+++++++|++.||+|++..|
T Consensus 14 ~~~~~q~~~f~~WIN~~L~~~~~~~~v~dl~~dL~DGv~L~~Lle~L~~~~l~~~~~~p~~~~~~~eNv~~aL~~~~~~g 93 (129)
T 2yrn_A 14 HGLEDQKRIYTDWANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIEDINGCPKNRSQMIENIDACLNFLAAKG 93 (129)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCCCSCCSCHHHHSSSSHHHHHHHHHHTTCCCTTCCSSCCSTTHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHhcccCCCccchhHHHHcccHHHHHHHHHHHhcCCcccccCCCCcHHHHHHHHHHHHHHHHHhC
Confidence 68999999999999999987644445899999999999999999999999998655566789999999999999999999
Q ss_pred ceeeecCCCCccCCchhHHHHHHHHHHHHhhhh
Q psy7817 81 IKLVNINSSDLVDGRPAVVLGLIWTIILYFQIE 113 (228)
Q Consensus 81 ~~~~~i~~~di~~g~~~~iL~llw~li~~~~i~ 113 (228)
+++++|+++||++|++++||+|+|+|+++|+.+
T Consensus 94 v~~~~i~~~DI~dgn~~~iL~Llw~L~r~~q~~ 126 (129)
T 2yrn_A 94 INIQGLSAEEIRNGNLKAILGLFFSLSRYKQQQ 126 (129)
T ss_dssp CCCTTCCHHHHHHTCHHHHHHHHHHHHHHHSSC
T ss_pred CcccCCChhhhhcCCHhHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999864
No 16
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=99.95 E-value=3.7e-28 Score=177.55 Aligned_cols=89 Identities=38% Similarity=0.612 Sum_probs=85.2
Q ss_pred cHHHHHHHHHHhhCCCC--cceecCCCCCcchhhHHHHHHHhcCCCCCCcccCcCCHHHHHHHHHHHHHhcCCCCCCCCh
Q psy7817 139 SAKKTLLRWVSNALPEH--IKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDP 216 (228)
Q Consensus 139 ~~~~~Ll~Wv~~~l~~~--~~I~nf~~s~~DG~~l~~Li~~~~p~~~~~~~~~~~~~~~n~~~a~~~A~~~lgip~ll~p 216 (228)
+++++||+|||.++..| ++|+||++||+||+|||+|||+++|+++|++.+...+..+|++.||+.|+++||||++|+|
T Consensus 3 s~k~~LL~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~lid~~~l~~~~~~~n~~~af~~Ae~~lgi~~ll~~ 82 (109)
T 1bkr_A 3 SAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDP 82 (109)
T ss_dssp HHHHHHHHHHHHHTTTCTTCCCSSSSGGGTTSHHHHHHHHHHCGGGCCGGGCCTTCHHHHHHHHHHHHHHHHCCCCCCCH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCcccccccHHHHHHHHHHCcCCCCHHHcCcCCHHHHHHHHHHHHHHHcCCCccCCH
Confidence 68999999999999988 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCC
Q psy7817 217 EVRQFLFLHVK 227 (228)
Q Consensus 217 ~Di~~~~~~~~ 227 (228)
|||+...+|+|
T Consensus 83 eDv~~~~pD~k 93 (109)
T 1bkr_A 83 EDISVDHPDEK 93 (109)
T ss_dssp HHHSSSSCCHH
T ss_pred HHccCCCCcHH
Confidence 99998888864
No 17
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=99.94 E-value=6.4e-28 Score=178.16 Aligned_cols=90 Identities=24% Similarity=0.372 Sum_probs=84.4
Q ss_pred cccHHHHHHHHHHhhCCCC--cceecCCCCCcchhhHHHHHHHhcCCCCCCcccCcCCHHHHHHHHHHHHHhcCCCCCCC
Q psy7817 137 VESAKKTLLRWVSNALPEH--IKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLL 214 (228)
Q Consensus 137 ~~~~~~~Ll~Wv~~~l~~~--~~I~nf~~s~~DG~~l~~Li~~~~p~~~~~~~~~~~~~~~n~~~a~~~A~~~lgip~ll 214 (228)
..++++.||+|||+++..| ++|+||++||+||+|||+|||+|+|+++|++.+...+..+|+++||+.|+++||||++|
T Consensus 5 ~~~~~~~LL~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~lid~~~l~~~~~~~n~~~af~~Ae~~lgi~~lL 84 (116)
T 1wyl_A 5 SSGTQEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLEPSELQGLGALEATAWALKVAENELGITPVV 84 (116)
T ss_dssp CSSSHHHHHHHHHHHHHHSTTCCCSCTTTTTTSSHHHHHHHHHHCTTSCCCSSGGGCCHHHHHHHHHHHHHHTTCCCCCS
T ss_pred CCCHHHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCCCCHHHhccCCHHHHHHHHHHHHHHHcCCcccc
Confidence 4578999999999999877 89999999999999999999999999999999999999999999999999889999999
Q ss_pred ChhhhcccCCCCC
Q psy7817 215 DPEVRQFLFLHVK 227 (228)
Q Consensus 215 ~p~Di~~~~~~~~ 227 (228)
+|+||+.. +|.|
T Consensus 85 ~peD~~~~-~d~k 96 (116)
T 1wyl_A 85 SAQAVVAG-SDPL 96 (116)
T ss_dssp CHHHHHHT-SCHH
T ss_pred CHHHHhcC-Cchh
Confidence 99999987 6653
No 18
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}
Probab=99.94 E-value=1.5e-27 Score=178.70 Aligned_cols=91 Identities=36% Similarity=0.574 Sum_probs=85.8
Q ss_pred cccHHHHHHHHHHhhCCCC--cceecCCCCCcchhhHHHHHHHhcCCCCCCcccCcCCHHHHHHHHHHHHHhcCCCCCCC
Q psy7817 137 VESAKKTLLRWVSNALPEH--IKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLL 214 (228)
Q Consensus 137 ~~~~~~~Ll~Wv~~~l~~~--~~I~nf~~s~~DG~~l~~Li~~~~p~~~~~~~~~~~~~~~n~~~a~~~A~~~lgip~ll 214 (228)
..+++++||+|||.++..| ++|+||++||+||+|||+|||+|+|+++|++.+...+..+|+++||+.|+++||||++|
T Consensus 5 ~~s~k~~LL~W~q~~~~~y~~v~V~nFs~sw~DG~Af~aLih~~~P~lid~~~l~~~~~~~n~~~af~~Ae~~Lgi~~ll 84 (127)
T 1wyq_A 5 SSGAKDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLLDFESLKKCNAHYNLQNAFNLAEKELGLTKLL 84 (127)
T ss_dssp CCCSTHHHHHHHHHHHHTSSSCCCSCSSTTSSSSHHHHHHHHHHCTTTCCTTTSCSSCCHHHHHHHHHHHHHTTCCCCCS
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCCCCCcccccccHHHHHHHHHHCcCcCCHHHhCcCCHHHHHHHHHHHHHHHcCCCccc
Confidence 4578999999999999887 89999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhcccCCCCC
Q psy7817 215 DPEVRQFLFLHVK 227 (228)
Q Consensus 215 ~p~Di~~~~~~~~ 227 (228)
+|+||+...+|.|
T Consensus 85 ~~eDv~~~~pDek 97 (127)
T 1wyq_A 85 DPEDVNVDQPDEK 97 (127)
T ss_dssp CTTTSCSSSCCHH
T ss_pred CHHHhccCCCcHH
Confidence 9999988888754
No 19
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=99.94 E-value=3.6e-27 Score=176.80 Aligned_cols=91 Identities=30% Similarity=0.461 Sum_probs=85.0
Q ss_pred cccHHHHHHHHHHhhCCCC--cceecCCCCCcchhhHHHHHHHhcCCCCCCcccCcCCHHHHHHHHHHHHHhcCCCCCCC
Q psy7817 137 VESAKKTLLRWVSNALPEH--IKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLL 214 (228)
Q Consensus 137 ~~~~~~~Ll~Wv~~~l~~~--~~I~nf~~s~~DG~~l~~Li~~~~p~~~~~~~~~~~~~~~n~~~a~~~A~~~lgip~ll 214 (228)
..++++.||+|||.++..| ++|+||++||+||+|||+|||+|+|+++|++.+...+..+|+++||+.|++++|||++|
T Consensus 5 ~~~~k~~LL~W~q~~~~~y~~v~V~nFs~sw~DG~af~aLih~~~P~lid~~~l~~~~~~~n~~~af~~Ae~~lgip~lL 84 (128)
T 2d87_A 5 SSGIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSPQNRRQNFEVAFSSAETHADCPQLL 84 (128)
T ss_dssp SCCHHHHHHHHHHHHSSSCTTCCCSCTTTTTTSSHHHHHHHHHHCTTTSCSTTSCSSCHHHHHHHHHHHHHHHHCCCCCS
T ss_pred cCCHHHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCcCCHHHcCccCHHHHHHHHHHHHHHcCCCCccc
Confidence 4589999999999999988 89999999999999999999999999999999999999999999999999889999999
Q ss_pred ChhhhcccC-CCCC
Q psy7817 215 DPEVRQFLF-LHVK 227 (228)
Q Consensus 215 ~p~Di~~~~-~~~~ 227 (228)
+|+||+.+. +|.|
T Consensus 85 ~peD~v~~~~pD~k 98 (128)
T 2d87_A 85 DTEDMVRLREPDWK 98 (128)
T ss_dssp CHHHHHHSSSCCHH
T ss_pred CHHHHhccCCccHH
Confidence 999998654 6654
No 20
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1
Probab=99.94 E-value=6.2e-28 Score=178.67 Aligned_cols=92 Identities=34% Similarity=0.531 Sum_probs=86.6
Q ss_pred ccccHHHHHHHHHHhhCCCC--cceecCCCCCcchhhHHHHHHHhcCCCCCCcccCcCCHHHHHHHHHHHHHhcCCCCCC
Q psy7817 136 DVESAKKTLLRWVSNALPEH--IKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARL 213 (228)
Q Consensus 136 ~~~~~~~~Ll~Wv~~~l~~~--~~I~nf~~s~~DG~~l~~Li~~~~p~~~~~~~~~~~~~~~n~~~a~~~A~~~lgip~l 213 (228)
.+.+++++||+|||+++..| ++|+||++||+||+|||+|||+|+|+++|++.+...+..+|++.||+.|+++||||++
T Consensus 5 ~~~~~~~~LL~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~lid~~~l~~~~~~~n~~~af~~Ae~~lgi~~l 84 (118)
T 1bhd_A 5 QQTNSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVVKMSPIERLEHAFSKAQTYLGIEKL 84 (118)
T ss_dssp CCSHHHHHHHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHHHHSCHHHHHHHHHHHHHHHHCCCCC
T ss_pred ccCCHHHHHHHHHHHHhccCCCCCCCCCcccccCcHHHHHHHHHHCcCcCCHHHhCcCCHHHHHHHHHHHHHHHcCCCcc
Confidence 34578999999999999988 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhcccCCCCC
Q psy7817 214 LDPEVRQFLFLHVK 227 (228)
Q Consensus 214 l~p~Di~~~~~~~~ 227 (228)
|+|+||+...+|.|
T Consensus 85 l~~eDv~~~~pD~k 98 (118)
T 1bhd_A 85 LDPEDVAVRLPDKK 98 (118)
T ss_dssp SCHHHHHTSCCCHH
T ss_pred cCHHHhhcCCCcHH
Confidence 99999998778764
No 21
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=99.94 E-value=1.9e-27 Score=176.85 Aligned_cols=92 Identities=24% Similarity=0.380 Sum_probs=85.2
Q ss_pred ccccHHHHHHHHHHhhCCCC--cceecCCCCCcchhhHHHHHHHhcCCCCCCcccCcCCHHHHHHHHHHHHHhcCCCCCC
Q psy7817 136 DVESAKKTLLRWVSNALPEH--IKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARL 213 (228)
Q Consensus 136 ~~~~~~~~Ll~Wv~~~l~~~--~~I~nf~~s~~DG~~l~~Li~~~~p~~~~~~~~~~~~~~~n~~~a~~~A~~~lgip~l 213 (228)
+.+++++.||+|||.++..| ++|+||++||+||+|||+|||+|+|+++|++.+...+..+|+++||+.|+++||||++
T Consensus 6 ~~~~~~~~LL~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~lid~~~l~~~~~~~n~~~af~~Ae~~lgi~~l 85 (121)
T 2d88_A 6 SGVARSSKLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLIDFDSLDEQNVEKNNQLAFDIAEKELGISPI 85 (121)
T ss_dssp CSCSSSCHHHHHHHHHSTTSSSCCCCCSSHHHHTSHHHHHHHHHHCTTTSCTTTSCTTCHHHHHHHHHHHHHHHTCCCCS
T ss_pred cccCHHHHHHHHHHHHhccCCCCCCCCchhhccccHHHHHHHHHhCcCcCCHHHcCccCHHHHHHHHHHHHHHHcCCCCc
Confidence 34567889999999999988 8999999999999999999999999999999999999999999999999989999999
Q ss_pred CChhhhcc-cCCCCC
Q psy7817 214 LDPEVRQF-LFLHVK 227 (228)
Q Consensus 214 l~p~Di~~-~~~~~~ 227 (228)
|+|+||+. ..+|.|
T Consensus 86 L~peD~~~~~~pD~k 100 (121)
T 2d88_A 86 MTGKEMASVGEPDKL 100 (121)
T ss_dssp SCHHHHHHSSCCCHH
T ss_pred CCHHHHhccCCCcHH
Confidence 99999996 567754
No 22
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.93 E-value=1.5e-26 Score=171.52 Aligned_cols=91 Identities=26% Similarity=0.531 Sum_probs=83.9
Q ss_pred ccccHHHHHHHHHHhhCCCC--cceecCCCCCcchhhHHHHHHHhcCCCCCCcccCcCCHHHHHHHHHHHHHhcCCCCCC
Q psy7817 136 DVESAKKTLLRWVSNALPEH--IKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARL 213 (228)
Q Consensus 136 ~~~~~~~~Ll~Wv~~~l~~~--~~I~nf~~s~~DG~~l~~Li~~~~p~~~~~~~~~~~~~~~n~~~a~~~A~~~lgip~l 213 (228)
.+.++++.||+|||.++..| ++|+||++||+||+|||+|||+|+|+++|++.+...+..+|+++||+.|+ +||||++
T Consensus 6 ~~~~~~~~LL~W~~~~~~~y~~v~v~nFs~sw~dG~af~aLi~~~~P~lid~~~l~~~~~~~n~~~af~~a~-~LGi~~l 84 (119)
T 2d89_A 6 SGPNASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQDIKENNKKAYDGFA-SIGISRL 84 (119)
T ss_dssp SCCCCHHHHHHHHHHHTTTCSSCCCCCSSHHHHTTHHHHHHHHHHCTTTSCGGGCCTTCSHHHHHHHHHHHH-HHTCCCC
T ss_pred CCCCHHHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCcCChhhhcccCHHHHHHHHHHHHH-HhCCCcc
Confidence 35678999999999999988 88999999999999999999999999999999999999999999999995 8999999
Q ss_pred CChhhhccc-CCCCC
Q psy7817 214 LDPEVRQFL-FLHVK 227 (228)
Q Consensus 214 l~p~Di~~~-~~~~~ 227 (228)
|+||||+.+ .+|.|
T Consensus 85 l~peDi~~~~~pD~k 99 (119)
T 2d89_A 85 LEPSDMVLLAIPDKL 99 (119)
T ss_dssp SCHHHHHHSSSCCHH
T ss_pred cCHHHHhccCCCcHH
Confidence 999999965 46654
No 23
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Probab=99.83 E-value=2.6e-21 Score=143.12 Aligned_cols=85 Identities=18% Similarity=0.288 Sum_probs=75.7
Q ss_pred cHHHHHHHHHHhhCCCC---cceecCC-CCCcchhhHHHHHHHhcCCCCCCccc-----CcCCHHHHHHHHHHHHHhcCC
Q psy7817 139 SAKKTLLRWVSNALPEH---IKVSDFG-PSWRDGHAFLSVIDNIQKDLVDIPAL-----SKQTNRHRLDTAFNVAESNLG 209 (228)
Q Consensus 139 ~~~~~Ll~Wv~~~l~~~---~~I~nf~-~s~~DG~~l~~Li~~~~p~~~~~~~~-----~~~~~~~n~~~a~~~A~~~lg 209 (228)
..++.|++|||+++..+ .+|+||+ +||+||.+||+|+|.+.|+.+||+.+ ++.++.+|+++||+.|+ ++|
T Consensus 7 i~d~~ll~W~N~kl~~~g~~~~I~~F~d~sl~dG~~~l~Ll~~i~P~~vd~~lv~~~~L~~~d~~~Na~~ais~Ar-klG 85 (124)
T 1wjo_A 7 GNDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTEDDKHNNAKYAVSMAR-RIG 85 (124)
T ss_dssp SCCHHHHHHHHHHHHHHTCSCCCSCTTCTTGGGTHHHHHHHHHHSTTSCCTTTSCCSSCCHHHHHHHHHHHHHHHH-HTC
T ss_pred cCHHHHHHHHHHHHHhcCCCcccCCCCcchhhhhHHHHHHHHHHCcCccCHHHhcCCCCCHHHHHHHHHHHHHHHH-HcC
Confidence 34689999999998753 6799999 99999999999999999999999954 44567899999999998 899
Q ss_pred CCCCCChhhhcccCC
Q psy7817 210 IARLLDPEVRQFLFL 224 (228)
Q Consensus 210 ip~ll~p~Di~~~~~ 224 (228)
||.++.||||+.+.+
T Consensus 86 ~~~~l~pEDIve~~p 100 (124)
T 1wjo_A 86 ARVYALPEDLVEVKP 100 (124)
T ss_dssp CSCCCCHHHHHHTCT
T ss_pred CCcccCHHHHhcCcc
Confidence 999999999998754
No 24
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Probab=99.70 E-value=1e-17 Score=123.84 Aligned_cols=105 Identities=17% Similarity=0.265 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhhhccCCCCCCccchH-HHhhhHHHHHHHHHHHcCCCCCCcCCC--CCCccchhhhHHHHHHHHHhCCc
Q psy7817 5 VQKKTFVNWINSYLSKRHPPLRIDDLT-EDLKDGTKLLALLEVLSNEKLPVEKGR--NLRRPHFLSNANTALQFLQSKRI 81 (228)
Q Consensus 5 ~q~~~~~~WiN~~L~~~~~~~~v~dl~-~dl~DGv~L~~Lle~l~~~~~~~~~~~--~~~~~~~i~N~~~~l~~~~~~g~ 81 (228)
+.++++++|+|+++.+......|.||. .+|+||+.+|.|++.+.|+.+.+.... ..+..++.+|++.|++++++.|+
T Consensus 7 i~d~~ll~W~N~kl~~~g~~~~I~~F~d~sl~dG~~~l~Ll~~i~P~~vd~~lv~~~~L~~~d~~~Na~~ais~ArklG~ 86 (124)
T 1wjo_A 7 GNDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTEDDKHNNAKYAVSMARRIGA 86 (124)
T ss_dssp SCCHHHHHHHHHHHHHHTCSCCCSCTTCTTGGGTHHHHHHHHHHSTTSCCTTTSCCSSCCHHHHHHHHHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHHHHhcCCCcccCCCCcchhhhhHHHHHHHHHHCcCccCHHHhcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 346789999999998755555799999 999999999999999999988765322 23567899999999999999999
Q ss_pred eeeecCCCCccCCchhHHHHHHHHHHHHh
Q psy7817 82 KLVNINSSDLVDGRPAVVLGLIWTIILYF 110 (228)
Q Consensus 82 ~~~~i~~~di~~g~~~~iL~llw~li~~~ 110 (228)
+. .+.||||+++++|++|+++|+|+.++
T Consensus 87 ~~-~l~pEDIve~~pK~ilt~va~l~~~~ 114 (124)
T 1wjo_A 87 RV-YALPEDLVEVKPKMVMTVFACLMGRG 114 (124)
T ss_dssp SC-CCCHHHHHHTCTTTTTHHHHHHHHHS
T ss_pred Cc-ccCHHHHhcCcchhhHHHHHHHHHHH
Confidence 96 79999999999999999999999764
No 25
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.47 E-value=1.2e-13 Score=107.00 Aligned_cols=141 Identities=16% Similarity=0.256 Sum_probs=97.3
Q ss_pred HHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcCCCCCCccchhhhHHHHHHHHHhCCceeeec-
Q psy7817 8 KTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFLQSKRIKLVNI- 86 (228)
Q Consensus 8 ~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~~~~~~i~N~~~~l~~~~~~g~~~~~i- 86 (228)
.....||+..+....|+ ..+|.+.|+||++||+|++.+.|+.++.....+...++.++|++..|++++..|++-..+
T Consensus 14 ~e~~~WIe~~l~~~l~~--~~~l~~~LkdGvvLCkL~N~l~P~~i~kI~~~~~~~f~~~eNI~~FL~a~~~~Gv~~~~lF 91 (159)
T 1p2x_A 14 DEAKKWIEECLGTDLGP--TSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLPEIFHF 91 (159)
T ss_dssp HHHHHHHHHHHTSCCCC--GGGHHHHTTTSHHHHHHHHHHCTTSCCCCCCCSSCCTTHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred HHHHHHHHHHhCCCCCC--hHHHHHHHcchHHHHHHHHHhCCCCccccccccCCcchHHHHHHHHHHHHHHcCCCccccc
Confidence 56899999999655442 468999999999999999999999886544434558999999999999999999987765
Q ss_pred CCCCccCCch-hHHHHHHHHHHHHhhhhhhhHHHHhhccCCCCCCCCCCcccccHHHHHHHHHHhhCCCC-cceecCC
Q psy7817 87 NSSDLVDGRP-AVVLGLIWTIILYFQIEENTRALAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEH-IKVSDFG 162 (228)
Q Consensus 87 ~~~di~~g~~-~~iL~llw~li~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~Wv~~~l~~~-~~I~nf~ 162 (228)
.+.|+++|.- ..++.-+..+.++..-.. ++..-. ........+.++ |+|++.++..+ +++.||+
T Consensus 92 ~~~DL~e~kn~~~Vi~~L~aL~~~~~~~g-------~~p~~~---~~~~~~~fseeq--l~~~~~~l~~~g~~~~~f~ 157 (159)
T 1p2x_A 92 ELTDIYEGKNLPKVIYCIHALSYFLSMQD-------LAPPLI---KSDENLSFTDED--VSIIVRRLRQSNVILPNFK 157 (159)
T ss_dssp CHHHHSSCSCHHHHHHHHHHHHHHHHTTT-------SSCCCC---CCCTTCCCCHHH--HHHHHHHHHHCCCCCCCGG
T ss_pred CHHHHHhcCCHHHHHHHHHHHHHHHhhCC-------CCCCch---hhhccCCCCHHH--HHHHHHHHHHcCCCCCCcC
Confidence 7899999852 333333333333221110 110000 011112334555 99999999655 7788886
No 26
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.39 E-value=1.6e-12 Score=104.32 Aligned_cols=143 Identities=15% Similarity=0.239 Sum_probs=95.8
Q ss_pred HHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcCCCCCCccchhhhHHHHHHHHHhCCceeee-
Q psy7817 7 KKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFLQSKRIKLVN- 85 (228)
Q Consensus 7 ~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~~~~~~i~N~~~~l~~~~~~g~~~~~- 85 (228)
++.+.+||+..+....+ ...+|.+.|+||++||+|++.+.|+.++.....+...++.++|++.+|++++..|++...
T Consensus 57 ~~e~~~WIe~~l~~~l~--~~~~f~~~LrDGvvLCkLiN~l~P~sv~kI~~~s~~~f~~~eNI~~FL~ac~~~Gvp~~~l 134 (203)
T 1p5s_A 57 VDEAKKWIEECLGTDLG--PTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLPEIFH 134 (203)
T ss_dssp HHHHHHHHHHHHTSCCC--CGGGHHHHHTTSHHHHHHHHHHCTTSCCCCCCCSSSCCCHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHhCCCCC--ChHHHHHHHcchHHHHHHHHHhCCCCcccccCCCCCcchHHHHHHHHHHHHHHcCCCcccc
Confidence 46789999999965443 357999999999999999999999988654334445789999999999999999999777
Q ss_pred cCCCCccCCch-hHHHHHHHHHHHHhhhhhhhHHHHhhccCCCCCCCCCCcccccHHHHHHHHHHhhCCCC-cceecCCC
Q psy7817 86 INSSDLVDGRP-AVVLGLIWTIILYFQIEENTRALAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEH-IKVSDFGP 163 (228)
Q Consensus 86 i~~~di~~g~~-~~iL~llw~li~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~Wv~~~l~~~-~~I~nf~~ 163 (228)
..+.|+++|.- ..++.-|..+.+...-.. ++..-. ........+.+++.. +|+++..+ +++.||+.
T Consensus 135 F~t~DL~e~kn~~~Vi~~L~aL~~~a~~~g-------~~p~l~---~l~~~~~Fseeql~~--~n~~l~q~G~~~~~F~~ 202 (203)
T 1p5s_A 135 FELTDIYEGKNLPKVIYCIHALSYFLSMQD-------LAPPLI---KSDENLSFTDEDVSI--IVRRLRQSNVILPNFKA 202 (203)
T ss_dssp CCHHHHHSCSCHHHHHHHHHHHHHHHHHTT-------SSCCCC---CCCTTCCCCHHHHHH--HHHHHHHCCCCCCCSTT
T ss_pred cCHHHHHhcCCHHHHHHHHHHHHHHHhhcC-------CCCchh---hhcccCCCCHHHHHH--HHHHHHHcCCCCCCCCC
Confidence 48999999863 333333333333221110 110000 000112234444433 88888555 77899874
No 27
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=6.2e-12 Score=92.74 Aligned_cols=100 Identities=16% Similarity=0.252 Sum_probs=85.7
Q ss_pred HHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcCCCCCCccchhhhHHHHHHHHHhCCceeeec
Q psy7817 7 KKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFLQSKRIKLVNI 86 (228)
Q Consensus 7 ~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~~~~~~i~N~~~~l~~~~~~g~~~~~i 86 (228)
++++.+|+|.++.. .+...|+|+.++++||..+|.|++.+.|..++..... .....+|++.|++.++++||+.. +
T Consensus 11 ~~~LL~W~~~~~~~-y~~v~v~nFs~sw~dG~af~aLi~~~~P~lid~~~l~---~~~~~~n~~~af~~a~~LGi~~l-l 85 (119)
T 2d89_A 11 SQSLLVWCKEVTKN-YRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLN---PQDIKENNKKAYDGFASIGISRL-L 85 (119)
T ss_dssp HHHHHHHHHHHTTT-CSSCCCCCSSHHHHTTHHHHHHHHHHCTTTSCGGGCC---TTCSHHHHHHHHHHHHHHTCCCC-S
T ss_pred HHHHHHHHHHHhcc-CCCCCCCCccccccccHHHHHHHHHHCcCcCChhhhc---ccCHHHHHHHHHHHHHHhCCCcc-c
Confidence 57899999999975 3567899999999999999999999999988654433 34669999999999988999854 9
Q ss_pred CCCCccCC---chhHHHHHHHHHHHHhh
Q psy7817 87 NSSDLVDG---RPAVVLGLIWTIILYFQ 111 (228)
Q Consensus 87 ~~~di~~g---~~~~iL~llw~li~~~~ 111 (228)
.|+|++++ +.+.++..+=+++.+|.
T Consensus 86 ~peDi~~~~~pD~ksvmtYvs~l~~~f~ 113 (119)
T 2d89_A 86 EPSDMVLLAIPDKLTVMTYLYQIRAHFS 113 (119)
T ss_dssp CHHHHHHSSSCCHHHHHHHHHHHHHHHS
T ss_pred CHHHHhccCCCcHHHHHHHHHHHHHHcc
Confidence 99999986 78999999999988774
No 28
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=99.26 E-value=8e-12 Score=91.74 Aligned_cols=100 Identities=20% Similarity=0.286 Sum_probs=85.7
Q ss_pred HHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcCCCCCCccchhhhHHHHHHHHHh-CCceeee
Q psy7817 7 KKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFLQS-KRIKLVN 85 (228)
Q Consensus 7 ~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~~~~~~i~N~~~~l~~~~~-~g~~~~~ 85 (228)
++++.+|+|.++.. .++..|+|+.++++||..||.|++.+.|..++.... ......+|++.|++.+++ +||+..
T Consensus 9 ~~~LL~W~q~~~~~-y~~v~v~nFs~sw~dG~af~aLih~~~P~lid~~~l---~~~~~~~n~~~af~~Ae~~lgi~~l- 83 (116)
T 1wyl_A 9 QEELLRWCQEQTAG-YPGVHVSDLSSSWADGLALCALVYRLQPGLLEPSEL---QGLGALEATAWALKVAENELGITPV- 83 (116)
T ss_dssp HHHHHHHHHHHHHH-STTCCCSCTTTTTTSSHHHHHHHHHHCTTSCCCSSG---GGCCHHHHHHHHHHHHHHTTCCCCC-
T ss_pred HHHHHHHHHHHhcc-CCCCCCCCccccccccHHHHHHHHHHCcCCCCHHHh---ccCCHHHHHHHHHHHHHHHcCCccc-
Confidence 57899999999975 456789999999999999999999999998865332 245679999999999987 999854
Q ss_pred cCCCCccCC-chhHHHHHHHHHHHHhh
Q psy7817 86 INSSDLVDG-RPAVVLGLIWTIILYFQ 111 (228)
Q Consensus 86 i~~~di~~g-~~~~iL~llw~li~~~~ 111 (228)
+.|+|++++ +.+.++..+=+++..|.
T Consensus 84 L~peD~~~~~d~ksv~tYvs~l~~~~~ 110 (116)
T 1wyl_A 84 VSAQAVVAGSDPLGLIAYLSHFHSAFK 110 (116)
T ss_dssp SCHHHHHHTSCHHHHHHHHHHHHHHSC
T ss_pred cCHHHHhcCCchhHHHHHHHHHHHHcc
Confidence 999999998 88999999988887764
No 29
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Probab=99.24 E-value=1.1e-11 Score=89.85 Aligned_cols=94 Identities=20% Similarity=0.326 Sum_probs=74.2
Q ss_pred HHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcCCCCCCccchhhhHHHHHHHHHhCCceeee-
Q psy7817 7 KKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFLQSKRIKLVN- 85 (228)
Q Consensus 7 ~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~~~~~~i~N~~~~l~~~~~~g~~~~~- 85 (228)
++.+.+||+..+... + -.+|.+.|+||++||+|++.+.|+.++... .+...++.++|++..|++++..|++...
T Consensus 5 e~e~~~WIe~~l~~~---~-~~~l~~~L~dGvvLCkL~N~l~P~~v~ki~-~~~~~f~~~eNI~~Fl~a~~~~Gv~~~~l 79 (108)
T 1h67_A 5 ERQLRVWIEGATGRR---I-GDNFMDGLKDGVILCELINKLQPGSVQKVN-DPVQNWHKLENIGNFLRAIKHYGVKPHDI 79 (108)
T ss_dssp SHHHHHHHHHHHSCC---C-CSCHHHHHHHCSHHHHHHHHHSTTSSTTCC-CTTSSHHHHHHHHHHHHHHHHHTSCGGGS
T ss_pred HHHHHHHHHHHhCCC---C-cHHHHHHHccHHHHHHHHHHhCCCCccccc-ccccchHHHHHHHHHHHHHHHcCCCcccc
Confidence 456899999999543 2 379999999999999999999999887433 3345789999999999999999998766
Q ss_pred cCCCCccCCc-hhHHHHHHHH
Q psy7817 86 INSSDLVDGR-PAVVLGLIWT 105 (228)
Q Consensus 86 i~~~di~~g~-~~~iL~llw~ 105 (228)
+.+.|+++|. ...++.-+-.
T Consensus 80 F~~~DL~e~kn~~~V~~~l~a 100 (108)
T 1h67_A 80 FEANDLFENTNHTQVQSTLIA 100 (108)
T ss_dssp CCHHHHHHTCCSHHHHHHHHH
T ss_pred cChhHHHhCCChHHHHHHHHH
Confidence 7899999864 3444433333
No 30
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=99.24 E-value=2.3e-11 Score=91.77 Aligned_cols=100 Identities=16% Similarity=0.293 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcCCCCCCccchhhhHHHHHHHHHhCCcee
Q psy7817 4 RVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFLQSKRIKL 83 (228)
Q Consensus 4 ~~q~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~~~~~~i~N~~~~l~~~~~~g~~~ 83 (228)
...++.+.+||+..+... + -.+|++.|+||++||+|++.+.|+.++... .+...++.++|++..|++++..|++.
T Consensus 16 ~~~~~e~~~WIe~~l~~~---~-~~~l~~~L~DGvvLCkL~N~l~P~~v~ki~-~~~~~f~~~eNI~~Fl~a~~~~Gv~~ 90 (136)
T 1wyp_A 16 HQREQELREWIEGVTGRR---I-GNNFMDGLKDGIILCEFINKLQPGSVKKIN-ESTQNWHQLENIGNFIKAITKYGVKP 90 (136)
T ss_dssp HHHHHHHHHHHHHHTCCC---C-CSCTTHHHHTSHHHHHHHHHHSTTSSSCCC-CSSCSHHHHHHHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHHHHHHhCCC---C-cHHHHHHHccHHhHHHHHHhhCCCCccccc-ccccchHHHHHHHHHHHHHHHcCCCc
Confidence 345678999999999543 2 378999999999999999999999886433 33457899999999999999999987
Q ss_pred ee-cCCCCccCCc-hhHHHHHHHHHHH
Q psy7817 84 VN-INSSDLVDGR-PAVVLGLIWTIIL 108 (228)
Q Consensus 84 ~~-i~~~di~~g~-~~~iL~llw~li~ 108 (228)
.. +.+.|+++|. ...++.-+..|-+
T Consensus 91 ~~lF~~~DL~e~kn~~~V~~cL~aL~~ 117 (136)
T 1wyp_A 91 HDIFEANDLFENTNHTQVQSTLLALAS 117 (136)
T ss_dssp GGCCCHHHHHSCSCSHHHHHHHHHHHH
T ss_pred ccccCchHHhcCCCHHHHHHHHHHHHH
Confidence 66 7899999864 3444444444443
No 31
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Probab=99.23 E-value=2.7e-11 Score=92.17 Aligned_cols=91 Identities=15% Similarity=0.145 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhhhccCCCC--CCccchHHHhhhHHHHHHHHHHHcC---CCCCCcCCCCCCccchhhhHHHHHHHHHhC
Q psy7817 5 VQKKTFVNWINSYLSKRHPP--LRIDDLTEDLKDGTKLLALLEVLSN---EKLPVEKGRNLRRPHFLSNANTALQFLQSK 79 (228)
Q Consensus 5 ~q~~~~~~WiN~~L~~~~~~--~~v~dl~~dl~DGv~L~~Lle~l~~---~~~~~~~~~~~~~~~~i~N~~~~l~~~~~~ 79 (228)
.+++.+.+||+..+....++ ....+|.+.|+||++||+|++.+.| +.++.....+...++.++|++..|++++..
T Consensus 9 ~~e~e~~~WIe~~l~~~l~~~~~~~~~f~~~LkDGvvLCkL~N~l~P~~~~~I~~kin~~~~~f~~~eNI~~FL~ac~~~ 88 (144)
T 1ujo_A 9 ELEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDY 88 (144)
T ss_dssp HHHHHHHHHHHHHHCTTTCCCCSSSSSHHHHTTSSHHHHHHHHHHSCTTTCCSCCCSSCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCcCCcHHHHHHHHcchHHHHHHHHHhCcccCCCcceeecCCCchhHHHHHHHHHHHHHHHc
Confidence 45677999999999765432 1247999999999999999999999 677622223345789999999999999999
Q ss_pred Cceeeec-CCCCccCCc
Q psy7817 80 RIKLVNI-NSSDLVDGR 95 (228)
Q Consensus 80 g~~~~~i-~~~di~~g~ 95 (228)
|++-..+ .+.|+++|.
T Consensus 89 Gv~~~~lF~t~DL~e~k 105 (144)
T 1ujo_A 89 GVIKTDMFQTVDLYEGK 105 (144)
T ss_dssp TCCSSSCCCHHHHHTCS
T ss_pred CcCccccCChhHHHhcC
Confidence 9987666 789999875
No 32
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=99.20 E-value=2.6e-11 Score=89.67 Aligned_cols=100 Identities=12% Similarity=0.206 Sum_probs=84.5
Q ss_pred HHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcCCCCCCccchhhhHHHHHHHHHh-CCceeee
Q psy7817 7 KKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFLQS-KRIKLVN 85 (228)
Q Consensus 7 ~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~~~~~~i~N~~~~l~~~~~-~g~~~~~ 85 (228)
++.+.+|+|.++.+ .++..|+|+.++++||..||.|++.+.|..++..... .....+|++.|++.+.+ +||+..
T Consensus 11 ~~~LL~W~q~~~~~-y~~v~v~nFs~sw~DG~af~aLih~~~P~lid~~~l~---~~~~~~n~~~af~~Ae~~lgi~~l- 85 (121)
T 2d88_A 11 SSKLLGWCQRQTDG-YAGVNVTDLTMSWKSGLALCAIIHRYRPDLIDFDSLD---EQNVEKNNQLAFDIAEKELGISPI- 85 (121)
T ss_dssp SCHHHHHHHHHSTT-SSSCCCCCSSHHHHTSHHHHHHHHHHCTTTSCTTTSC---TTCHHHHHHHHHHHHHHHTCCCCS-
T ss_pred HHHHHHHHHHHhcc-CCCCCCCCchhhccccHHHHHHHHHhCcCcCCHHHcC---ccCHHHHHHHHHHHHHHHcCCCCc-
Confidence 35689999999965 4567899999999999999999999999888654333 34679999999999985 999854
Q ss_pred cCCCCccCC---chhHHHHHHHHHHHHhh
Q psy7817 86 INSSDLVDG---RPAVVLGLIWTIILYFQ 111 (228)
Q Consensus 86 i~~~di~~g---~~~~iL~llw~li~~~~ 111 (228)
+.|+|++++ +.+.++..+=+++.+|.
T Consensus 86 L~peD~~~~~~pD~ksimtYvs~l~~~~~ 114 (121)
T 2d88_A 86 MTGKEMASVGEPDKLSMVMYLTQFYEMFK 114 (121)
T ss_dssp SCHHHHHHSSCCCHHHHHHHHHHHHHHHS
T ss_pred CCHHHHhccCCCcHHHHHHHHHHHHHHcc
Confidence 999999975 78999999998888774
No 33
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=99.20 E-value=3e-11 Score=90.12 Aligned_cols=100 Identities=15% Similarity=0.189 Sum_probs=85.1
Q ss_pred HHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcCCCCCCccchhhhHHHHHHHHHh-CCceeee
Q psy7817 7 KKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFLQS-KRIKLVN 85 (228)
Q Consensus 7 ~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~~~~~~i~N~~~~l~~~~~-~g~~~~~ 85 (228)
++++.+|+|.++.. .++..|+|+.++++||..||.|++.+.|..++.... +.....+|++.|++.+.+ .||+..
T Consensus 9 k~~LL~W~q~~~~~-y~~v~V~nFs~sw~DG~af~aLih~~~P~lid~~~l---~~~~~~~n~~~af~~Ae~~lgip~l- 83 (128)
T 2d87_A 9 KQMLLDWCRAKTRG-YEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQL---SPQNRRQNFEVAFSSAETHADCPQL- 83 (128)
T ss_dssp HHHHHHHHHHHSSS-CTTCCCSCTTTTTTSSHHHHHHHHHHCTTTSCSTTS---CSSCHHHHHHHHHHHHHHHHCCCCC-
T ss_pred HHHHHHHHHHHhcc-CCCCCCCCccccccccHHHHHHHHHHCcCcCCHHHc---CccCHHHHHHHHHHHHHHcCCCCcc-
Confidence 57899999999974 456789999999999999999999999998865433 245679999999999988 799754
Q ss_pred cCCCCccCCc---hhHHHHHHHHHHHHhh
Q psy7817 86 INSSDLVDGR---PAVVLGLIWTIILYFQ 111 (228)
Q Consensus 86 i~~~di~~g~---~~~iL~llw~li~~~~ 111 (228)
+.|+|+++++ .+.++..+=+++.+|.
T Consensus 84 L~peD~v~~~~pD~ksvmtYvs~l~~~~~ 112 (128)
T 2d87_A 84 LDTEDMVRLREPDWKCVYTYIQEFYRCLV 112 (128)
T ss_dssp SCHHHHHHSSSCCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHhccCCccHHHHHHHHHHHHHHHh
Confidence 9999998876 7999999999988774
No 34
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=99.19 E-value=3.8e-11 Score=91.57 Aligned_cols=99 Identities=21% Similarity=0.307 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcCCCCCCccchhhhHHHHHHHHHhCCceeee
Q psy7817 6 QKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFLQSKRIKLVN 85 (228)
Q Consensus 6 q~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~~~~~~i~N~~~~l~~~~~~g~~~~~ 85 (228)
.++.+..||+..+... + -.+|.+.|+||++||+|++.+.|+.++... .+...++.++|++..|++++..|++...
T Consensus 18 ~~~e~~~WIe~~l~~~---i-~~~l~~~L~DGvvLCkL~N~l~P~~v~kin-~~~~~f~~~eNI~~FL~a~~~~Gv~~~~ 92 (146)
T 1wyn_A 18 KEAELRTWIEGLTGLS---I-GPDFQKGLKDGTILCTLMNKLQPGSVPKIN-RSMQNWHQLENLSNFIKAMVSYGMNPVD 92 (146)
T ss_dssp HHHHHHHHHHHHHCCC---C-CSCHHHHHHTTSHHHHHHHHHCTTSCSCCC-CSSCHHHHHHHHHHHHHHHHHHTCCSSS
T ss_pred HHHHHHHHHHHHhCCC---C-cHHHHHHHccHHHHHHHHHHhCCCCccccc-cccccccHHHHHHHHHHHHHHcCCCccc
Confidence 4678999999999543 3 478999999999999999999999886433 3345789999999999999999998766
Q ss_pred -cCCCCccCCc-hhHHHHHHHHHHHH
Q psy7817 86 -INSSDLVDGR-PAVVLGLIWTIILY 109 (228)
Q Consensus 86 -i~~~di~~g~-~~~iL~llw~li~~ 109 (228)
+.+.|+++|. ...++.-+..|-++
T Consensus 93 lF~~~DL~e~kn~~~V~~cL~aL~~~ 118 (146)
T 1wyn_A 93 LFEANDLFESGNMTQVQVSLLALAGK 118 (146)
T ss_dssp CCCHHHHHTCSCSHHHHHHHHHHHHH
T ss_pred ccChhHHHhcCChHHHHHHHHHHHHH
Confidence 7899999864 45555445555443
No 35
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=99.18 E-value=9.9e-11 Score=86.46 Aligned_cols=98 Identities=19% Similarity=0.229 Sum_probs=71.7
Q ss_pred HHHHHHHHHhhhccCCC--CC-Cc-cchHHHhhhHHHHHHHHHHHcCCCCCCcCCCCCCccchhhhHHHHHHHHHhCCce
Q psy7817 7 KKTFVNWINSYLSKRHP--PL-RI-DDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFLQSKRIK 82 (228)
Q Consensus 7 ~~~~~~WiN~~L~~~~~--~~-~v-~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~~~~~~i~N~~~~l~~~~~~g~~ 82 (228)
++.+.+||+..+....+ +. .- +.|++.|+||++||+|++.+.|+.++.....+...++.++|++..|++++..|+
T Consensus 8 e~e~~~WI~~~~~l~~~~~~~~~~~~~l~~~L~dGvvLCkL~N~l~Pg~i~ki~~~~~~~f~~~eNI~~FL~a~~~~g~- 86 (121)
T 1wyr_A 8 EEQIVTWLISLGVLESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVEKFCLDPQTEADCINNINDFLKGCATLQV- 86 (121)
T ss_dssp HHHHHHHHHHHTSSCCCSSCCSCHHHHHHHHHHHSHHHHHHHHHHSTTCCSCCCSSCCSHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHhcCcCCcccCCCCcHHHHHHHHccHHHHHHHHHHhCCCCCCcCCCCCcchHHHHHHHHHHHHHHHHcCC-
Confidence 45699999999631211 11 12 237899999999999999999998875444444578999999999999999987
Q ss_pred eeecCCCCccCCc-hhHHHHHHHHH
Q psy7817 83 LVNINSSDLVDGR-PAVVLGLIWTI 106 (228)
Q Consensus 83 ~~~i~~~di~~g~-~~~iL~llw~l 106 (228)
..+.+.|+++|. ...++.-+..|
T Consensus 87 -~~F~~~DL~e~kn~~~V~~cL~aL 110 (121)
T 1wyr_A 87 -EIFDPDDLYSGVNFSKVLSTLLAV 110 (121)
T ss_dssp -CCCCHHHHHTCSCHHHHHHHHHHH
T ss_pred -CccCHHHHHcCCCHHHHHHHHHHH
Confidence 458899999973 33343333333
No 36
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Probab=99.17 E-value=4.6e-11 Score=89.49 Aligned_cols=85 Identities=19% Similarity=0.288 Sum_probs=73.0
Q ss_pred cHHHHHHHHHHhhCCCC-cceecCCCCCcchhhHHHHHHHhcCCCCCCcccCc-----CCHHHHHHHHHHHHHhcCCCCC
Q psy7817 139 SAKKTLLRWVSNALPEH-IKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSK-----QTNRHRLDTAFNVAESNLGIAR 212 (228)
Q Consensus 139 ~~~~~Ll~Wv~~~l~~~-~~I~nf~~s~~DG~~l~~Li~~~~p~~~~~~~~~~-----~~~~~n~~~a~~~A~~~lgip~ 212 (228)
..++.+.+|+|+++... .+|+|+.+|++||..|+.|++.+.|..+++..+.. ....+|+++|++.++ ..||..
T Consensus 22 ~q~ktft~WiN~~L~~~~~~v~dL~~Dl~DGv~L~~Lle~ls~~~~~~~~~~~~p~~r~~kieNv~~aL~~lk-~~gi~l 100 (131)
T 2vzc_A 22 VVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVLNVSFAFELMQ-DGGLEK 100 (131)
T ss_dssp HHHHHHHHHHHHHHGGGTCCCCCTTTTTTTSHHHHHHHHHHTTCCCCTTSSCSSCCSHHHHHHHHHHHHHHHH-HTTCCC
T ss_pred HHHHHHHHHHHHHHHHcCCcccCHHHHcccHHHHHHHHHHhcCCCCCHHHhcCCCCcHHHHHHHHHHHHHHHH-HcCCCc
Confidence 45788999999999876 78999999999999999999999999887655432 256799999999999 689975
Q ss_pred -CCChhhhcccCC
Q psy7817 213 -LLDPEVRQFLFL 224 (228)
Q Consensus 213 -ll~p~Di~~~~~ 224 (228)
-+.|+||+.+++
T Consensus 101 ~~I~~~DIvdGn~ 113 (131)
T 2vzc_A 101 PKPRPEDIVNCDL 113 (131)
T ss_dssp CSSCHHHHHTTCH
T ss_pred CCCCHHHhhCCCH
Confidence 699999998764
No 37
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}
Probab=99.15 E-value=1.5e-10 Score=86.17 Aligned_cols=100 Identities=15% Similarity=0.274 Sum_probs=83.9
Q ss_pred HHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcCCCCCCccchhhhHHHHHHHHH-hCCceeee
Q psy7817 7 KKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFLQ-SKRIKLVN 85 (228)
Q Consensus 7 ~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~~~~~~i~N~~~~l~~~~-~~g~~~~~ 85 (228)
++++.+|+|.++.. .++..|+|+.++++||..||.|++.+.|..++..... .....+|++.|++.+. .+||+..
T Consensus 9 k~~LL~W~q~~~~~-y~~v~V~nFs~sw~DG~Af~aLih~~~P~lid~~~l~---~~~~~~n~~~af~~Ae~~Lgi~~l- 83 (127)
T 1wyq_A 9 KDALLLWCQMKTAG-YPNVNVHNFTTSWRDGLAFNAIVHKHRPDLLDFESLK---KCNAHYNLQNAFNLAEKELGLTKL- 83 (127)
T ss_dssp THHHHHHHHHHHHT-SSSCCCSCSSTTSSSSHHHHHHHHHHCTTTCCTTTSC---SSCCHHHHHHHHHHHHHTTCCCCC-
T ss_pred HHHHHHHHHHHHhc-CCCCCCCCCcccccccHHHHHHHHHHCcCcCCHHHhC---cCCHHHHHHHHHHHHHHHcCCCcc-
Confidence 56799999999864 4567899999999999999999999999988654433 3456999999999998 5999854
Q ss_pred cCCCCccCCc--hhHHHHHHHHHHHHhh
Q psy7817 86 INSSDLVDGR--PAVVLGLIWTIILYFQ 111 (228)
Q Consensus 86 i~~~di~~g~--~~~iL~llw~li~~~~ 111 (228)
+.|+|++.++ .+.++..+=+++.+|.
T Consensus 84 l~~eDv~~~~pDeksimtYvs~l~~~~~ 111 (127)
T 1wyq_A 84 LDPEDVNVDQPDEKSIITYVATYYHYFS 111 (127)
T ss_dssp SCTTTSCSSSCCHHHHHHHHHHHHHHHH
T ss_pred cCHHHhccCCCcHHHHHHHHHHHHHHhh
Confidence 8999998876 5889988888888774
No 38
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=99.15 E-value=7.1e-11 Score=85.72 Aligned_cols=100 Identities=16% Similarity=0.307 Sum_probs=83.4
Q ss_pred HHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcCCCCCCccchhhhHHHHHHHHH-hCCceeee
Q psy7817 7 KKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFLQ-SKRIKLVN 85 (228)
Q Consensus 7 ~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~~~~~~i~N~~~~l~~~~-~~g~~~~~ 85 (228)
++++.+|+|.++.. .++..|+|+.++++||..+|.|++.+.|..++..... .....+|++.|++.+. ..||+-.
T Consensus 5 k~~LL~W~q~~~~~-y~~v~v~nFs~sw~dG~af~aLih~~~P~lid~~~l~---~~~~~~n~~~af~~Ae~~lgi~~l- 79 (109)
T 1bkr_A 5 KDALLLWCQMKTAG-YPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLK---KSNAHYNLQNAFNLAEQHLGLTKL- 79 (109)
T ss_dssp HHHHHHHHHHHTTT-CTTCCCSSSSGGGTTSHHHHHHHHHHCGGGCCGGGCC---TTCHHHHHHHHHHHHHHHHCCCCC-
T ss_pred HHHHHHHHHHHHcc-CCCCCCCCCcccccccHHHHHHHHHHCcCCCCHHHcC---cCCHHHHHHHHHHHHHHHcCCCcc-
Confidence 67899999999864 4567899999999999999999999999887654333 3467999999999997 5999854
Q ss_pred cCCCCccCCc--hhHHHHHHHHHHHHhh
Q psy7817 86 INSSDLVDGR--PAVVLGLIWTIILYFQ 111 (228)
Q Consensus 86 i~~~di~~g~--~~~iL~llw~li~~~~ 111 (228)
+.|+|++.++ .+.++..+=+++.+|.
T Consensus 80 l~~eDv~~~~pD~ksi~tYvs~~~~~f~ 107 (109)
T 1bkr_A 80 LDPEDISVDHPDEKSIITYVVTYYHYFS 107 (109)
T ss_dssp CCHHHHSSSSCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHccCCCCcHHHHHHHHHHHHHHhh
Confidence 8999998876 4888888888877663
No 39
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=9.6e-11 Score=90.22 Aligned_cols=90 Identities=20% Similarity=0.250 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhhhccCCCCC--CccchHHHhhhHHHHHHHHHHHcC---CCCCCcCCCCCCccchhhhHHHHHHHHHhC
Q psy7817 5 VQKKTFVNWINSYLSKRHPPL--RIDDLTEDLKDGTKLLALLEVLSN---EKLPVEKGRNLRRPHFLSNANTALQFLQSK 79 (228)
Q Consensus 5 ~q~~~~~~WiN~~L~~~~~~~--~v~dl~~dl~DGv~L~~Lle~l~~---~~~~~~~~~~~~~~~~i~N~~~~l~~~~~~ 79 (228)
..+..+..||+..+....++- ...+|.+.|+||++||+|++.+.| +.++... .+...++.++|++..|++++..
T Consensus 17 ~~e~e~~~WIe~~l~~~l~~~~~~~~~~~~~LkDGvvLCkL~N~l~P~~~~~i~kIn-~~~~~F~~~eNI~~FL~ac~~~ 95 (155)
T 1wym_A 17 DLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKIQ-ASTMAFKQMEQISQFLQAAERY 95 (155)
T ss_dssp HHHHHHHHHHHHHSSSCCCCCCSSHHHHHHHHHTSHHHHHHHHHHSCTTTCSCCCCC-CCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHcchHHHHHHHHHhccccCCCcCccc-CCCccccHHHHHHHHHHHHHHc
Confidence 456689999999996543321 126899999999999999999999 8877432 3345789999999999999999
Q ss_pred Cceeeec-CCCCccCCc
Q psy7817 80 RIKLVNI-NSSDLVDGR 95 (228)
Q Consensus 80 g~~~~~i-~~~di~~g~ 95 (228)
|++-..+ .+.|+++|.
T Consensus 96 Gv~~~~lF~t~DL~e~k 112 (155)
T 1wym_A 96 GINTTDIFQTVDLWEGK 112 (155)
T ss_dssp TCCTTTCCCHHHHHTCS
T ss_pred CCCccccCChHHHHhcC
Confidence 9987666 789999875
No 40
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=99.12 E-value=6.9e-11 Score=99.39 Aligned_cols=99 Identities=18% Similarity=0.297 Sum_probs=80.8
Q ss_pred HHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCC------cCCCCCCccchhhhHHHHHHHHHhCC
Q psy7817 7 KKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPV------EKGRNLRRPHFLSNANTALQFLQSKR 80 (228)
Q Consensus 7 ~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~------~~~~~~~~~~~i~N~~~~l~~~~~~g 80 (228)
++.+.+|+|.++.+..... |+||.++|+||..+|.|++.+.|..++. ....+.+.....+|+..|++.+++.|
T Consensus 170 ~~~LL~W~n~~l~~~g~~~-I~nF~~s~~DG~a~~aLi~~~~P~~~~~~~~~l~~~~~~~~~~~~~~n~~~a~~~A~~lG 248 (275)
T 1aoa_A 170 EELLLRWANFHLENSGWQK-INNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQADKLG 248 (275)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CSCSSTTTTTSHHHHHHHHHHSCCSCSSSCCCCCCCCTTTTCSSHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhcCCCc-chhhhhhhhhhHHHHHHHHHHCCCccccccccccccccCCCccCHHHHHHHHHHHHHHcC
Confidence 5779999999996542222 9999999999999999999999985432 11222335578999999999999999
Q ss_pred ceeeecCCCCccCCchhHHHHHHHHHH
Q psy7817 81 IKLVNINSSDLVDGRPAVVLGLIWTII 107 (228)
Q Consensus 81 ~~~~~i~~~di~~g~~~~iL~llw~li 107 (228)
|+. -+.|+||+++++++++.++-+|+
T Consensus 249 i~~-~l~peDi~~~~~k~i~tyva~Lf 274 (275)
T 1aoa_A 249 CRQ-FVTPADVVSGNPKLNLAFVANLF 274 (275)
T ss_dssp CCC-SCCHHHHHTTCHHHHHHHHHHHH
T ss_pred CCC-cCCHHHcCCCChhHHHHHHHHHh
Confidence 985 59999999999999999998875
No 41
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}
Probab=99.10 E-value=3.1e-10 Score=84.30 Aligned_cols=88 Identities=23% Similarity=0.286 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhh--hccCCCC-CCccch-HHHhhhHHHHHHHHHHHcCCCCCCcCCCCCCccchhhhHHHHHHHHHh-CC
Q psy7817 6 QKKTFVNWINSY--LSKRHPP-LRIDDL-TEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFLQS-KR 80 (228)
Q Consensus 6 q~~~~~~WiN~~--L~~~~~~-~~v~dl-~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~~~~~~i~N~~~~l~~~~~-~g 80 (228)
.+..+.+||+.. |.....+ ....++ .+.|+||++||+|++.+.|+.++.....+...++.++|++..|++++. .|
T Consensus 13 ~~~e~~~WI~~~~~L~~~~~~~~~~~~~l~~~LkdGvvLCkLiN~l~Pg~i~kI~~~~~~~f~~~eNI~~FL~a~~~~~g 92 (126)
T 2l3g_A 13 SAEQTVTWLITLGVLESPKKTISDPEGFLQASLKDGVVLCRLLERLLPGTIEKVYPEPRSESECLSNIREFLRGCGASLR 92 (126)
T ss_dssp HHHHHHHHHHHTTSSCCCSSCCSCHHHHHHHHHTTSHHHHHHHHHHSTTCCSCCCSSCCSHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHhCccccCCCCCChhhHHHHHHccHHHHHHHHHHhCCCCCCccCCCCCcchHHHHHHHHHHHHHHHhCC
Confidence 356799999998 4331111 124566 499999999999999999999885444454578999999999999999 98
Q ss_pred ceeeecCCCCccCCc
Q psy7817 81 IKLVNINSSDLVDGR 95 (228)
Q Consensus 81 ~~~~~i~~~di~~g~ 95 (228)
+ ..+.+.|+++|.
T Consensus 93 ~--~lF~t~DL~e~k 105 (126)
T 2l3g_A 93 L--ETFDANDLYQGQ 105 (126)
T ss_dssp C--CCCCHHHHHTTS
T ss_pred C--CccCHHHHHhCC
Confidence 6 457899999874
No 42
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1
Probab=99.07 E-value=6e-11 Score=87.27 Aligned_cols=99 Identities=12% Similarity=0.185 Sum_probs=82.1
Q ss_pred HHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcCCCCCCccchhhhHHHHHHHHH-hCCceeee
Q psy7817 7 KKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFLQ-SKRIKLVN 85 (228)
Q Consensus 7 ~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~~~~~~i~N~~~~l~~~~-~~g~~~~~ 85 (228)
++++.+|+|.++.. .++..|+|+.++++||..+|.|++.+.|..++..... .....+|++.|++.+. ..||+-.
T Consensus 10 ~~~LL~W~q~~~~~-y~~v~v~nFs~sw~DG~af~aLih~~~P~lid~~~l~---~~~~~~n~~~af~~Ae~~lgi~~l- 84 (118)
T 1bhd_A 10 EKILLSWVRQTTRP-YSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVV---KMSPIERLEHAFSKAQTYLGIEKL- 84 (118)
T ss_dssp HHHHHHHHHHHHTT-STTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHHH---HSCHHHHHHHHHHHHHHHHCCCCC-
T ss_pred HHHHHHHHHHHhcc-CCCCCCCCCcccccCcHHHHHHHHHHCcCcCCHHHhC---cCCHHHHHHHHHHHHHHHcCCCcc-
Confidence 67899999999964 3567899999999999999999999999877643322 3356899999999997 6999854
Q ss_pred cCCCCccCC--chhHHHHHHHHHHHHh
Q psy7817 86 INSSDLVDG--RPAVVLGLIWTIILYF 110 (228)
Q Consensus 86 i~~~di~~g--~~~~iL~llw~li~~~ 110 (228)
+.|+|++.+ +.+.++..+=+++..|
T Consensus 85 l~~eDv~~~~pD~ksvmtYvs~l~~~~ 111 (118)
T 1bhd_A 85 LDPEDVAVRLPDKKSIIMYLTSLFEVL 111 (118)
T ss_dssp SCHHHHHTSCCCHHHHHHHHHHHHHHC
T ss_pred cCHHHhhcCCCcHHHHHHHHHHHHHHC
Confidence 899999987 5589998888887766
No 43
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}
Probab=99.05 E-value=5.4e-10 Score=88.89 Aligned_cols=97 Identities=18% Similarity=0.254 Sum_probs=73.5
Q ss_pred HHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcCC---------CCCCccchhhhHHHHHHHHHh
Q psy7817 8 KTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKG---------RNLRRPHFLSNANTALQFLQS 78 (228)
Q Consensus 8 ~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~---------~~~~~~~~i~N~~~~l~~~~~ 78 (228)
+....||+..+....|+ ..+|.+.|+||++||+|++.+.|+.+|..+. .+...++.++|++..|++++.
T Consensus 50 ~e~~~WIe~~lg~~l~~--~~~l~~~LrdGvvLCkL~N~l~Pg~vp~kkI~~~~~~~~~~~~~~F~~~eNI~~FL~ac~~ 127 (193)
T 3i6x_A 50 EEAKRWMEACLGEDLPP--TTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVIQWLNAMDE 127 (193)
T ss_dssp HHHHHHHHHHHSSCCCC--GGGHHHHHTTSHHHHHHHHHHCTTTCCGGGSTTTTCHHHHHSCCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCC--hHHHHHHhccHHHHHHHHHHHCCCCCCccccCCcccccccCcccchHHHHHHHHHHHHHHH
Confidence 36789999999654432 3589999999999999999999998863221 223478999999999999999
Q ss_pred CCceeeec-CCCCccCCc-hhHHHHHHHHH
Q psy7817 79 KRIKLVNI-NSSDLVDGR-PAVVLGLIWTI 106 (228)
Q Consensus 79 ~g~~~~~i-~~~di~~g~-~~~iL~llw~l 106 (228)
.|++-..+ .+.|+++|. ...++.-|-.|
T Consensus 128 ~Gvp~~~lFet~DL~e~kn~~~V~~cL~aL 157 (193)
T 3i6x_A 128 IGLPKIFYPETTDIYDRKNMPRCIYCIHAL 157 (193)
T ss_dssp HTCCGGGCCCHHHHHSCSCHHHHHHHHHHH
T ss_pred cCCCcccCCCcHHHhcCCCHHHHHHHHHHH
Confidence 99986655 789999874 44444333333
No 44
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}
Probab=99.03 E-value=3e-10 Score=90.31 Aligned_cols=86 Identities=19% Similarity=0.300 Sum_probs=69.6
Q ss_pred HHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcC---------CCCCCccchhhhHHHHHHHHHh
Q psy7817 8 KTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEK---------GRNLRRPHFLSNANTALQFLQS 78 (228)
Q Consensus 8 ~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~---------~~~~~~~~~i~N~~~~l~~~~~ 78 (228)
..+..||+..+....|+ ..+|.+.|+||++||+|++.+.|+.++..+ ..+...++.++|++..|++++.
T Consensus 28 ~e~~~WIe~~lg~~lp~--~~~f~~~LrDGvvLCkL~N~l~P~sv~~~kI~~~~~~~~~~~~~~f~~~eNI~~FL~ac~~ 105 (190)
T 2rr8_A 28 EEAKRWMEACLGEDLPP--TTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVIQWLNAMDE 105 (190)
T ss_dssp HHHHHHHHHHSCCCCCC--HHHHHHHHSSHHHHHHHHHHSCTTTSCSSCSSTTTCHHHHHTCCCSSTHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHhCCCCCC--hhHHHHHHcchhhHHHHHHHhCCCCcccccccccccccccCCCCcchHHHHHHHHHHHHHH
Confidence 77999999999654432 468999999999999999999998875322 1123368899999999999999
Q ss_pred CCceeeec-CCCCccCCc
Q psy7817 79 KRIKLVNI-NSSDLVDGR 95 (228)
Q Consensus 79 ~g~~~~~i-~~~di~~g~ 95 (228)
.|++-..+ .+.|+++|.
T Consensus 106 ~Gvp~~~lFet~DL~e~k 123 (190)
T 2rr8_A 106 IGLPKIFYPETTDIYDRK 123 (190)
T ss_dssp TTCCSTTCCCHHHHTCTT
T ss_pred cCCCccccCCHHHHHhcC
Confidence 99987665 789999874
No 45
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=98.98 E-value=9.3e-10 Score=91.43 Aligned_cols=102 Identities=18% Similarity=0.260 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcCCCCCCccchhhhHHHHHHHHHh-CCceee
Q psy7817 6 QKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFLQS-KRIKLV 84 (228)
Q Consensus 6 q~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~~~~~~i~N~~~~l~~~~~-~g~~~~ 84 (228)
.++++.+|+|..+. .+++..|+|+.++++||..||.|++.+.|..++..... .....+|+..|++.+.+ .||+.
T Consensus 141 ~~~~LL~W~~~~~~-~y~~v~v~nFs~s~~DG~a~~aLi~~~~P~~id~~~l~---~~~~~~n~~~a~~~A~~~lGi~~- 215 (254)
T 1wku_A 141 AKEGLLLWCQRKTA-PYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDYAKLR---KDDPIGNLNTAFEVAEKYLDIPK- 215 (254)
T ss_dssp HHHHHHHHHHHHHT-TCTTCCCCSSSGGGTTSHHHHHHHHHHCTTSCCGGGCC---TTCHHHHHHHHHHHHHHHSCCCC-
T ss_pred HHHHHHHHHHHHcc-CCCCCcCCCCccchhhHHHHHHHHHHHCCCcccccccC---cCCHHHHHHHHHHHHHHHcCCCC-
Confidence 35679999999985 34567799999999999999999999999988654333 34679999999999987 99985
Q ss_pred ecCCCCccCC---chhHHHHHHHHHHHHhhh
Q psy7817 85 NINSSDLVDG---RPAVVLGLIWTIILYFQI 112 (228)
Q Consensus 85 ~i~~~di~~g---~~~~iL~llw~li~~~~i 112 (228)
-+.|+|++++ +.+.++..+-+++.+|.-
T Consensus 216 ~l~peDiv~~~~pD~k~imtyva~l~~~~~~ 246 (254)
T 1wku_A 216 MLDAEDIVNTPKPDEKAIMTYVSCFYHAFAG 246 (254)
T ss_dssp CSCHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHhccCCCcHHHHHHHHHHHHHHhhc
Confidence 4999999887 679999999999888754
No 46
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=98.95 E-value=3.2e-10 Score=93.82 Aligned_cols=100 Identities=15% Similarity=0.235 Sum_probs=83.4
Q ss_pred HHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcCCCCCCccchhhhHHHHHHHHH-hCCceeee
Q psy7817 7 KKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFLQ-SKRIKLVN 85 (228)
Q Consensus 7 ~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~~~~~~i~N~~~~l~~~~-~~g~~~~~ 85 (228)
++.+.+|+|.++.+ .++..|.|+.++++||..+|.|++.+.|..++..... +.....+|+..|++.++ ..||+. -
T Consensus 137 ~~~LL~W~~~~~~~-~~~~~i~nFs~s~~DG~a~~aLi~~~~P~li~~~~~~--~~~~~~~n~~~a~~~A~~~lGi~~-~ 212 (246)
T 1dxx_A 137 EKILLSWVRQSTRN-YPQVNVINFTTSWSDGLALNALIHSHRPDLFDWNSVV--SQQSATQRLEHAFNIARYQLGIEK-L 212 (246)
T ss_dssp HHHHHHHHHHHHTT-CTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHHH--TCCCHHHHHHHHHHHHHHTTCCCC-C
T ss_pred HHHHHHHHHHHhcc-CCCCCcCCCcccchhHHHHHHHHHHHCcCccchhhhc--ccCCHHHHHHHHHHHHHHhCCCCc-c
Confidence 57899999999975 4567899999999999999999999998877643221 12356899999999998 699985 4
Q ss_pred cCCCCccCCch--hHHHHHHHHHHHHh
Q psy7817 86 INSSDLVDGRP--AVVLGLIWTIILYF 110 (228)
Q Consensus 86 i~~~di~~g~~--~~iL~llw~li~~~ 110 (228)
+.|+||+.+++ +.++..+-+++.+|
T Consensus 213 l~peDi~~~~pD~k~i~tyva~l~~~~ 239 (246)
T 1dxx_A 213 LDPEDVDTTYPDKKSILMYITSLFQVL 239 (246)
T ss_dssp CCHHHHSSSSCCHHHHHHHHHHHHTTS
T ss_pred CCHHHhhcCCCcHHHHHHHHHHHHHHc
Confidence 99999999988 99999999888765
No 47
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=98.94 E-value=4e-10 Score=93.17 Aligned_cols=101 Identities=15% Similarity=0.223 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcCCCCCCccchhhhHHHHHHHHHh-CCceee
Q psy7817 6 QKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFLQS-KRIKLV 84 (228)
Q Consensus 6 q~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~~~~~~i~N~~~~l~~~~~-~g~~~~ 84 (228)
.++++.+|+|.++.+ .++..|+|+.++|+||..+|.|++.+.|..++..... .....+|+..|++.+++ .||+..
T Consensus 134 ~~~~LL~W~~~~~~~-~~~~~v~nF~~s~~DG~a~~aLi~~~~P~~i~~~~l~---~~~~~~n~~~a~~~a~~~lGi~~~ 209 (245)
T 1sh5_A 134 AKEKLLLWSQRMVEG-YQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVY---RQTNLENLDQAFSVAERDLGVTRL 209 (245)
T ss_dssp HHHHHHHHHHHHTTT-STTCCCCCSSGGGTTSHHHHHHHHTTCTTTCCHHHHH---HSCHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHhcc-CCCcccCCccccccchHHHHHHHHHHCCCCCCHHHcc---cCCHHHHHHHHHHHHHHhCCCCcc
Confidence 356799999999975 4466799999999999999999999999887654322 33578999999999996 999854
Q ss_pred ecCCCCccCC--chhHHHHHHHHHHHHhh
Q psy7817 85 NINSSDLVDG--RPAVVLGLIWTIILYFQ 111 (228)
Q Consensus 85 ~i~~~di~~g--~~~~iL~llw~li~~~~ 111 (228)
+.|+||+.+ +.+.++..+-+++.+|.
T Consensus 210 -l~peDi~~~~pd~k~i~tyva~l~~~~~ 237 (245)
T 1sh5_A 210 -LDPEDVDVPQPDEKSIITYVSSLYDAMP 237 (245)
T ss_dssp -CCHHHHSSSSCCHHHHHHHHHHHHHHCC
T ss_pred -CCHHHhccCCCcHHHHHHHHHHHHHHcC
Confidence 899999965 67999999999988774
No 48
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=98.90 E-value=7.6e-10 Score=93.66 Aligned_cols=100 Identities=15% Similarity=0.226 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcCCCCCCccchhhhHHHHHHHH-HhCCceee
Q psy7817 6 QKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFL-QSKRIKLV 84 (228)
Q Consensus 6 q~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~~~~~~i~N~~~~l~~~-~~~g~~~~ 84 (228)
.++++.+|+|.++.+ .++..|+||.++|+||..+|.|++.+.|..++..... .....+|+..|++.+ +..||+..
T Consensus 190 ~k~~LL~W~n~~~~~-y~~v~I~nFs~sw~DG~af~aLI~~~~P~lid~~~l~---~~~~~~N~~~Af~~Ae~~LGi~~l 265 (296)
T 3f7p_A 190 AKEKLLLWSQRMVEG-YQGLRCDNFTSSWRDGRLFNAIIHRHKPLLIDMNKVY---RQTNLENLDQAFSVAERDLGVTRL 265 (296)
T ss_dssp HHHHHHHHHHHHTTT-STTCCCCCSSGGGTTSHHHHHHHHHHCGGGCCHHHHT---TSCHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHhcC-CCCCcCCCccccccccHHHHHHHHHHCcCccCHHHcC---cccHHHHHHHHHHHHHHhCCCCcc
Confidence 367799999999964 4567899999999999999999999999877654322 235689999999999 46999854
Q ss_pred ecCCCCccCC--chhHHHHHHHHHHHHh
Q psy7817 85 NINSSDLVDG--RPAVVLGLIWTIILYF 110 (228)
Q Consensus 85 ~i~~~di~~g--~~~~iL~llw~li~~~ 110 (228)
+.|+||+.+ +.++++..+-+++.+|
T Consensus 266 -l~pEDi~~~~pDeksimtyvs~ly~~f 292 (296)
T 3f7p_A 266 -LDPEDVDVPQPDEKSIITYVSSLYDAM 292 (296)
T ss_dssp -CCHHHHSSSSCCHHHHHHHHHHHHHTC
T ss_pred -CCHHHhcCCCCcHHHHHHHHHHHHHHC
Confidence 899999885 6699999999998766
No 49
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=98.83 E-value=5.1e-09 Score=86.52 Aligned_cols=93 Identities=19% Similarity=0.304 Sum_probs=76.1
Q ss_pred HHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcCCCCCCccchhhhHHHHHHHHHh-CCceeee
Q psy7817 7 KKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFLQS-KRIKLVN 85 (228)
Q Consensus 7 ~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~~~~~~i~N~~~~l~~~~~-~g~~~~~ 85 (228)
++.+.+|+|.++. +..|+|+.++++||..+|.|++.+.|..++.... .+.....+|+..|++.+++ .||+..
T Consensus 145 ~~~LL~W~~~~~~----~~~v~nFs~s~~dG~a~~aLi~~~~P~~i~~~~~--l~~~~~~~n~~~a~~~A~~~lGi~~~- 217 (245)
T 2wa7_A 145 KQRLLGWIQNKIP----YLPITNFNQNWQDGKALGALVDSCAPGLCPDWES--WDPQKPVDNAREAVQQADDWLGVPQV- 217 (245)
T ss_dssp HHHHHHHHHHHST----TSCCCCSSGGGTTSHHHHHHHHHHSTTSSTTGGG--SCTTCHHHHHHHHHHHHHHHSCCCCS-
T ss_pred HHHHHHHHHHhCC----CCCCCCCcccchhhHHHHHHHHHHCccccccccc--cCcccHHHHHHHHHHHHHHhCCCCcc-
Confidence 6789999999983 4679999999999999999999999988743221 2345779999999999998 999854
Q ss_pred cCCCCccCC--chhHHHHHHHHH
Q psy7817 86 INSSDLVDG--RPAVVLGLIWTI 106 (228)
Q Consensus 86 i~~~di~~g--~~~~iL~llw~l 106 (228)
+.|+||++| +.++++..+=++
T Consensus 218 l~peDi~~~~~d~ksi~tyvs~~ 240 (245)
T 2wa7_A 218 ITPEEIIHPDVDEHSVMTYLSQF 240 (245)
T ss_dssp SCHHHHTCTTCCHHHHHHHHTHH
T ss_pred CCHHHhccCCCcHHHHHHHHHHH
Confidence 999999995 557777776544
No 50
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=98.82 E-value=1.3e-08 Score=74.91 Aligned_cols=99 Identities=15% Similarity=0.249 Sum_probs=80.2
Q ss_pred HHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcCC--CCCCccchhhhHHHHHHHHHhCCceee
Q psy7817 7 KKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKG--RNLRRPHFLSNANTALQFLQSKRIKLV 84 (228)
Q Consensus 7 ~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~--~~~~~~~~i~N~~~~l~~~~~~g~~~~ 84 (228)
++.+..|||..|....+. + ++|+||+++|+|++.|.|+.+|..+. .+...++.++|.....++.++.|++.
T Consensus 7 r~ElL~WIN~~L~~~~~k-----i-E~L~~Ga~yCqlmd~l~Pg~v~l~KVkf~a~~e~e~~~N~k~lq~af~k~gV~k- 79 (123)
T 2qjz_A 7 RHDMLAWINESLQLNLTK-----I-EQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDK- 79 (123)
T ss_dssp HHHHHHHHHHHHTCCCCC-----G-GGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHHHTCCC-
T ss_pred HHHHHHHHHHHHCCCCch-----H-HHcCchHHHHHHHHHHccCCCcHHHhccCCCChHHHHHHHHHHHHHHHHcCCCC-
Confidence 567899999999544332 2 68999999999999999999985433 34457899999999999999999995
Q ss_pred ecCCCCccCCchhHHHHHHHHHHHHhhh
Q psy7817 85 NINSSDLVDGRPAVVLGLIWTIILYFQI 112 (228)
Q Consensus 85 ~i~~~di~~g~~~~iL~llw~li~~~~i 112 (228)
.|..+.++.|.....+-++=-+-.+|..
T Consensus 80 ~i~v~kLvkgk~qdnleflqW~k~f~d~ 107 (123)
T 2qjz_A 80 IIPVDKLVKGKFQDNFEFVQWFKKFFDA 107 (123)
T ss_dssp CCCHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHcCCchhHHHHHHHHHHHHHH
Confidence 4999999999998888777555555544
No 51
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=1.5e-09 Score=81.04 Aligned_cols=87 Identities=17% Similarity=0.233 Sum_probs=70.2
Q ss_pred cccHHHHHHHHHHhhCCCC-c--ceecCCCCCcchhhHHHHHHHhcCCCCCC---cccCcCCHHHHHHHHHHHHHhcCCC
Q psy7817 137 VESAKKTLLRWVSNALPEH-I--KVSDFGPSWRDGHAFLSVIDNIQKDLVDI---PALSKQTNRHRLDTAFNVAESNLGI 210 (228)
Q Consensus 137 ~~~~~~~Ll~Wv~~~l~~~-~--~I~nf~~s~~DG~~l~~Li~~~~p~~~~~---~~~~~~~~~~n~~~a~~~A~~~lgi 210 (228)
....++.+.+|+|.++... . .|+||.++++||..||.|++.+.|+.++. .....-...+|++.|++.++ ..||
T Consensus 16 ~~~q~~~f~~WIN~~L~~~~~~~~v~dl~~dL~DGv~L~~Lle~L~~~~l~~~~~~p~~~~~~~eNv~~aL~~~~-~~gv 94 (129)
T 2yrn_A 16 LEDQKRIYTDWANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIEDINGCPKNRSQMIENIDACLNFLA-AKGI 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCSCCSCHHHHSSSSHHHHHHHHHHTTCCCTTCCSSCCSTTHHHHHHHHHHHHHH-HHTC
T ss_pred hHHHHHHHHHHHHHHhcccCCCccchhHHHHcccHHHHHHHHHHHhcCCcccccCCCCcHHHHHHHHHHHHHHHH-HhCC
Confidence 3456779999999998654 2 58999999999999999999999987751 11223356899999999998 6899
Q ss_pred CC-CCChhhhcccCC
Q psy7817 211 AR-LLDPEVRQFLFL 224 (228)
Q Consensus 211 p~-ll~p~Di~~~~~ 224 (228)
+. -+.|+||+..++
T Consensus 95 ~~~~i~~~DI~dgn~ 109 (129)
T 2yrn_A 95 NIQGLSAEEIRNGNL 109 (129)
T ss_dssp CCTTCCHHHHHHTCH
T ss_pred cccCCChhhhhcCCH
Confidence 86 589999997653
No 52
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=98.77 E-value=7.6e-09 Score=86.59 Aligned_cols=91 Identities=24% Similarity=0.343 Sum_probs=74.6
Q ss_pred HHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcCCCCCCccchhhhHHHHHHHHHh-CCceeee
Q psy7817 7 KKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFLQS-KRIKLVN 85 (228)
Q Consensus 7 ~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~~~~~~i~N~~~~l~~~~~-~g~~~~~ 85 (228)
++++.+|+|.++ ++..|+||.++++||..+|.|++.+.|..++... ..+.....+|+..|++.+++ .||+. -
T Consensus 172 k~~LL~W~n~~~----~~~~I~nFs~sw~DG~af~aLi~~~~P~li~d~~--~l~~~~~~~n~~~Af~~Ae~~lGi~~-l 244 (272)
T 3hoc_A 172 KQRLLGWIQNKL----PQLPITNFSRDWQSGRALGALVDSCAPGLCPDWD--SWDASKPVTNAREAMQQADDWLGIPQ-V 244 (272)
T ss_dssp HHHHHHHHHHHC----TTSCCCCSSGGGTTSHHHHHHHHHHSTTSSTTGG--GSCTTCHHHHHHHHHHHHHHHHCCCC-S
T ss_pred HHHHHHHHHhhC----CCCCCCChhhcccchHHHHHHHHHhCcccccchh--hcCccCHHHHHHHHHHHHHHhCCCCc-c
Confidence 678999999987 3567999999999999999999999998875322 12245779999999999998 99985 4
Q ss_pred cCCCCccC--CchhHHHHHHH
Q psy7817 86 INSSDLVD--GRPAVVLGLIW 104 (228)
Q Consensus 86 i~~~di~~--g~~~~iL~llw 104 (228)
+.|+||+. .+.+.++..+=
T Consensus 245 l~peDiv~~~pD~ksimtYvs 265 (272)
T 3hoc_A 245 ITPEEIVDPNVDKHSVMTYLS 265 (272)
T ss_dssp SCHHHHTCTTCCHHHHHHHHT
T ss_pred CCHHHhccCCCChHHHHHHHH
Confidence 99999999 56677775543
No 53
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=1.9e-08 Score=76.95 Aligned_cols=100 Identities=15% Similarity=0.240 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcCC--CCCCccchhhhHHHHHHHHHhCCcee
Q psy7817 6 QKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKG--RNLRRPHFLSNANTALQFLQSKRIKL 83 (228)
Q Consensus 6 q~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~--~~~~~~~~i~N~~~~l~~~~~~g~~~ 83 (228)
+++.+..|||..|....+ -+ ++|+||+++|+|++.|.|+.+|..+. .....++.++|.....++.+++|++.
T Consensus 23 sr~ElL~WIN~~L~~~~~-----ki-E~L~~GaayCQLmd~L~PgsV~l~KVkf~a~~e~e~~~N~k~lQ~af~k~gV~k 96 (159)
T 1wyo_A 23 SRHDMLAWVNDSLHLNYT-----KI-EQLCSGAAYCQFMDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDK 96 (159)
T ss_dssp CHHHHHHHHHHHSCCCCS-----SG-GGGGGCHHHHHHHHHHSTTSSCTTSCCTTCCSSHHHHHHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHCCCCc-----hh-hhcCccHHHHHHHHHHccCCCcHhhhccCCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 467799999999954333 22 68999999999999999999985432 34457899999999999999999995
Q ss_pred eecCCCCccCCchhHHHHHHHHHHHHhhh
Q psy7817 84 VNINSSDLVDGRPAVVLGLIWTIILYFQI 112 (228)
Q Consensus 84 ~~i~~~di~~g~~~~iL~llw~li~~~~i 112 (228)
.|..+.++.|+....+-++=.+-.+|..
T Consensus 97 -~ipV~kLvkgk~qdNlEFlqWfk~f~d~ 124 (159)
T 1wyo_A 97 -IIPVEKLVKGKFQDNFEFIQWFKKFFDA 124 (159)
T ss_dssp -CCCHHHHTTTCSHHHHHHHHHHHHHHHT
T ss_pred -ccCHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 4999999999998888877666565544
No 54
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=98.67 E-value=2.1e-08 Score=86.83 Aligned_cols=95 Identities=19% Similarity=0.280 Sum_probs=76.7
Q ss_pred HHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcCCCCCCccchhhhHHHHHHHHHh-CCceeee
Q psy7817 7 KKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFLQS-KRIKLVN 85 (228)
Q Consensus 7 ~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~~~~~~i~N~~~~l~~~~~-~g~~~~~ 85 (228)
++.+.+|+|.++. ...|+|+.++|+||..||.|++.+.|+.++.... .+.....+|+..|++.+.+ +||+..
T Consensus 142 k~~LL~W~~~~~~----~~~v~nF~~sw~DG~af~aLi~~~~P~~~~d~~~--l~~~~~~~n~~~Af~~Ae~~lGip~l- 214 (347)
T 4b7l_A 142 KQRLLGWIQNKIP----YLPITNFNQNWQDGKALGALVDSCAPGLCPDWES--WDPQKPVDNAREAMQQADDWLGVPQV- 214 (347)
T ss_dssp HHHHHHHHHHHCT----TSCCCCSSGGGTTSHHHHHHHHHHSTTSSTTGGG--SCTTCHHHHHHHHHHHHHHHHCCCCS-
T ss_pred HHHHHHHHHhhCC----CcccCCCCCCccchHHHHHHHHHhCCccccchhh--cCcCCHHHHHHHHHHHHHHhcCCCcc-
Confidence 6789999999973 4569999999999999999999999988854322 2245679999999999987 899854
Q ss_pred cCCCCccCCch--hHHHHHHHHHHH
Q psy7817 86 INSSDLVDGRP--AVVLGLIWTIIL 108 (228)
Q Consensus 86 i~~~di~~g~~--~~iL~llw~li~ 108 (228)
+.|+||+++++ ++++..+=+++.
T Consensus 215 l~peDi~~~~pDeksimtYvs~~~~ 239 (347)
T 4b7l_A 215 ITPEEIIHPDVDEHSVMTYLSQFPK 239 (347)
T ss_dssp SCHHHHTCTTCCHHHHHHHHTTGGG
T ss_pred cCHHHcCCCCCChhHHHHHHHHHhh
Confidence 99999998865 777766655543
No 55
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=98.44 E-value=3.9e-08 Score=94.39 Aligned_cols=100 Identities=20% Similarity=0.287 Sum_probs=83.3
Q ss_pred HHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcCCCCCCccchhhhHHHHHHHHHh-CCceeee
Q psy7817 7 KKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFLQS-KRIKLVN 85 (228)
Q Consensus 7 ~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~~~~~~i~N~~~~l~~~~~-~g~~~~~ 85 (228)
++.+.+|+|.++. .+++..|.|+.++|+||..||.|++.+.|..++..... .....+|+..|++.+.+ .||+..
T Consensus 123 ~~~ll~W~~~~~~-~~~~~~v~nf~~s~~dg~~~~~li~~~~p~~~~~~~~~---~~~~~~n~~~a~~~a~~~lg~~~~- 197 (863)
T 1sjj_A 123 KEGLLLWYQRKTA-PYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLR---KDDPLTNLNTAFDVAEKYLDIPKM- 197 (863)
T ss_dssp TTTTHHHHHHHHT-TSTTCCCCSSSGGGTTSHHHHHHHHTTCCSSSCSGGGG---SCCCGGGCTHHHHHHHHHHCCCCS-
T ss_pred HHHHHHHHHHhcc-CCCCCCCCCCccccccHHHHHHHHHHhCCCCcChhhCC---CCCHHHHHHHHHHHHHHhCCCCCc-
Confidence 3568999999985 34567799999999999999999999999988754333 34568999999999987 899854
Q ss_pred cCCCCccCC---chhHHHHHHHHHHHHhh
Q psy7817 86 INSSDLVDG---RPAVVLGLIWTIILYFQ 111 (228)
Q Consensus 86 i~~~di~~g---~~~~iL~llw~li~~~~ 111 (228)
+.|+||+++ +.++++..+-+++.+|.
T Consensus 198 l~~ed~~~~~~pd~~~~~~y~~~l~~~~~ 226 (863)
T 1sjj_A 198 LDAEDIVGTARPDEKAIMTYVSSFYHAFS 226 (863)
T ss_dssp CCHHHHTTCSSCCHHHHHHHHHHTTTTTC
T ss_pred cCHHHHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 999999987 56999999998887763
No 56
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=98.28 E-value=1.8e-06 Score=63.45 Aligned_cols=80 Identities=9% Similarity=0.223 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhhCCCCcceecCCCCCcchhhHHHHHHHhcCCCCCCcccC-cC----CHHHHHHHHHHHHHhcCCCCCCC
Q psy7817 140 AKKTLLRWVSNALPEHIKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALS-KQ----TNRHRLDTAFNVAESNLGIARLL 214 (228)
Q Consensus 140 ~~~~Ll~Wv~~~l~~~~~I~nf~~s~~DG~~l~~Li~~~~p~~~~~~~~~-~~----~~~~n~~~a~~~A~~~lgip~ll 214 (228)
....|+.|+|..+... ++-. .+..||.+||.|++.+.|+.+++..+. .. +-.+|.....+... ++|||+.+
T Consensus 6 sr~ElL~WIN~~L~~~--~~ki-E~L~~Ga~yCqlmd~l~Pg~v~l~KVkf~a~~e~e~~~N~k~lq~af~-k~gV~k~i 81 (123)
T 2qjz_A 6 SRHDMLAWINESLQLN--LTKI-EQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFK-RMGVDKII 81 (123)
T ss_dssp CHHHHHHHHHHHHTCC--CCCG-GGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHH-HHTCCCCC
T ss_pred cHHHHHHHHHHHHCCC--CchH-HHcCchHHHHHHHHHHccCCCcHHHhccCCCChHHHHHHHHHHHHHHH-HcCCCCcc
Confidence 4678999999999753 2222 579999999999999999999988776 22 33566665555454 99999999
Q ss_pred ChhhhcccC
Q psy7817 215 DPEVRQFLF 223 (228)
Q Consensus 215 ~p~Di~~~~ 223 (228)
+.+.++.+.
T Consensus 82 ~v~kLvkgk 90 (123)
T 2qjz_A 82 PVDKLVKGK 90 (123)
T ss_dssp CHHHHTTCC
T ss_pred CHHHHHcCC
Confidence 998887654
No 57
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=2.5e-06 Score=65.16 Aligned_cols=81 Identities=14% Similarity=0.255 Sum_probs=63.1
Q ss_pred cHHHHHHHHHHhhCCCCcceecCCCCCcchhhHHHHHHHhcCCCCCCcccC-----cCCHHHHHHHHHHHHHhcCCCCCC
Q psy7817 139 SAKKTLLRWVSNALPEHIKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALS-----KQTNRHRLDTAFNVAESNLGIARL 213 (228)
Q Consensus 139 ~~~~~Ll~Wv~~~l~~~~~I~nf~~s~~DG~~l~~Li~~~~p~~~~~~~~~-----~~~~~~n~~~a~~~A~~~lgip~l 213 (228)
..+..|+.|+|..+... ++-. .+..||.+||.|++.+.|+.+++..+. +-+-.+|.....+... ++||++.
T Consensus 22 ~sr~ElL~WIN~~L~~~--~~ki-E~L~~GaayCQLmd~L~PgsV~l~KVkf~a~~e~e~~~N~k~lQ~af~-k~gV~k~ 97 (159)
T 1wyo_A 22 LSRHDMLAWVNDSLHLN--YTKI-EQLCSGAAYCQFMDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQAAFK-KMGVDKI 97 (159)
T ss_dssp CCHHHHHHHHHHHSCCC--CSSG-GGGGGCHHHHHHHHHHSTTSSCTTSCCTTCCSSHHHHHHHHHHHHHHH-HHTCCCC
T ss_pred hhHHHHHHHHHHHHCCC--Cchh-hhcCccHHHHHHHHHHccCCCcHhhhccCCCChHHHHHHHHHHHHHHH-HcCCCCc
Confidence 45689999999999853 2222 579999999999999999999987765 2244577766655555 9999999
Q ss_pred CChhhhcccC
Q psy7817 214 LDPEVRQFLF 223 (228)
Q Consensus 214 l~p~Di~~~~ 223 (228)
++.+.++.+.
T Consensus 98 ipV~kLvkgk 107 (159)
T 1wyo_A 98 IPVEKLVKGK 107 (159)
T ss_dssp CCHHHHTTTC
T ss_pred cCHHHHhcCC
Confidence 9999887654
No 58
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Probab=98.08 E-value=5.4e-06 Score=62.75 Aligned_cols=83 Identities=11% Similarity=0.209 Sum_probs=64.5
Q ss_pred ccHHHHHHHHHHhhCCCCcc-----eecCCCCCcchhhHHHHHHHhcC---CCCCCcccCcC----CHHHHHHHHHHHHH
Q psy7817 138 ESAKKTLLRWVSNALPEHIK-----VSDFGPSWRDGHAFLSVIDNIQK---DLVDIPALSKQ----TNRHRLDTAFNVAE 205 (228)
Q Consensus 138 ~~~~~~Ll~Wv~~~l~~~~~-----I~nf~~s~~DG~~l~~Li~~~~p---~~~~~~~~~~~----~~~~n~~~a~~~A~ 205 (228)
...++.+..|++..++..+. -.+|-..++||++||.|++.+.| +.++. .+... ...+|++..+..++
T Consensus 8 ~~~e~e~~~WIe~~l~~~l~~~~~~~~~f~~~LkDGvvLCkL~N~l~P~~~~~I~~-kin~~~~~f~~~eNI~~FL~ac~ 86 (144)
T 1ujo_A 8 EELEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKV-PENPPSMVFKQMEQVAQFLKAAE 86 (144)
T ss_dssp CHHHHHHHHHHHHHHCTTTCCCCSSSSSHHHHTTSSHHHHHHHHHHSCTTTCCSCC-CSSCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCCcHHHHHHHHcchHHHHHHHHHhCcccCCCcce-eecCCCchhHHHHHHHHHHHHHH
Confidence 35678999999999876422 25777889999999999999999 66652 22222 24689999999998
Q ss_pred hcCCCCC--CCChhhhccc
Q psy7817 206 SNLGIAR--LLDPEVRQFL 222 (228)
Q Consensus 206 ~~lgip~--ll~p~Di~~~ 222 (228)
.+|||. +..+.|+...
T Consensus 87 -~~Gv~~~~lF~t~DL~e~ 104 (144)
T 1ujo_A 87 -DYGVIKTDMFQTVDLYEG 104 (144)
T ss_dssp -HHTCCSSSCCCHHHHHTC
T ss_pred -HcCcCccccCChhHHHhc
Confidence 799998 5689998754
No 59
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Probab=98.01 E-value=2.2e-06 Score=61.78 Aligned_cols=78 Identities=14% Similarity=0.280 Sum_probs=62.8
Q ss_pred HHHHHHHHHhhCCCCcceecCCCCCcchhhHHHHHHHhcCCCCCCcccCcC----CHHHHHHHHHHHHHhcCCCCC--CC
Q psy7817 141 KKTLLRWVSNALPEHIKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQ----TNRHRLDTAFNVAESNLGIAR--LL 214 (228)
Q Consensus 141 ~~~Ll~Wv~~~l~~~~~I~nf~~s~~DG~~l~~Li~~~~p~~~~~~~~~~~----~~~~n~~~a~~~A~~~lgip~--ll 214 (228)
++.+..|++..++..+ -.+|-...+||++||.|++.+.|+.++ .+... ...+|++..+..++ .+|+|. +.
T Consensus 5 e~e~~~WIe~~l~~~~-~~~l~~~L~dGvvLCkL~N~l~P~~v~--ki~~~~~~f~~~eNI~~Fl~a~~-~~Gv~~~~lF 80 (108)
T 1h67_A 5 ERQLRVWIEGATGRRI-GDNFMDGLKDGVILCELINKLQPGSVQ--KVNDPVQNWHKLENIGNFLRAIK-HYGVKPHDIF 80 (108)
T ss_dssp SHHHHHHHHHHHSCCC-CSCHHHHHHHCSHHHHHHHHHSTTSST--TCCCTTSSHHHHHHHHHHHHHHH-HHTSCGGGSC
T ss_pred HHHHHHHHHHHhCCCC-cHHHHHHHccHHHHHHHHHHhCCCCcc--cccccccchHHHHHHHHHHHHHH-HcCCCccccc
Confidence 4678999999988632 257778899999999999999999885 23222 34689999999998 899997 68
Q ss_pred Chhhhccc
Q psy7817 215 DPEVRQFL 222 (228)
Q Consensus 215 ~p~Di~~~ 222 (228)
.+.|+...
T Consensus 81 ~~~DL~e~ 88 (108)
T 1h67_A 81 EANDLFEN 88 (108)
T ss_dssp CHHHHHHT
T ss_pred ChhHHHhC
Confidence 99998754
No 60
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=98.00 E-value=1.9e-05 Score=59.18 Aligned_cols=80 Identities=13% Similarity=0.258 Sum_probs=65.0
Q ss_pred cHHHHHHHHHHhhCCCCcceecCCCCCcchhhHHHHHHHhcCCCCCCcccCcC----CHHHHHHHHHHHHHhcCCCCC--
Q psy7817 139 SAKKTLLRWVSNALPEHIKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQ----TNRHRLDTAFNVAESNLGIAR-- 212 (228)
Q Consensus 139 ~~~~~Ll~Wv~~~l~~~~~I~nf~~s~~DG~~l~~Li~~~~p~~~~~~~~~~~----~~~~n~~~a~~~A~~~lgip~-- 212 (228)
..++.+..|++..++..+ -.+|-...+||++||.|++.+.|+.+. .+... ...+|++..+..++ .+|+|.
T Consensus 17 ~~~~e~~~WIe~~l~~~~-~~~l~~~L~DGvvLCkL~N~l~P~~v~--ki~~~~~~f~~~eNI~~Fl~a~~-~~Gv~~~~ 92 (136)
T 1wyp_A 17 QREQELREWIEGVTGRRI-GNNFMDGLKDGIILCEFINKLQPGSVK--KINESTQNWHQLENIGNFIKAIT-KYGVKPHD 92 (136)
T ss_dssp HHHHHHHHHHHHHTCCCC-CSCTTHHHHTSHHHHHHHHHHSTTSSS--CCCCSSCSHHHHHHHHHHHHHHH-HHTCCGGG
T ss_pred HHHHHHHHHHHHHhCCCC-cHHHHHHHccHHhHHHHHHhhCCCCcc--cccccccchHHHHHHHHHHHHHH-HcCCCccc
Confidence 356899999999998643 368889999999999999999999873 22221 35689999999998 899997
Q ss_pred CCChhhhccc
Q psy7817 213 LLDPEVRQFL 222 (228)
Q Consensus 213 ll~p~Di~~~ 222 (228)
+..+.|+...
T Consensus 93 lF~~~DL~e~ 102 (136)
T 1wyp_A 93 IFEANDLFEN 102 (136)
T ss_dssp CCCHHHHHSC
T ss_pred ccCchHHhcC
Confidence 6899998764
No 61
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=97.92 E-value=1.8e-05 Score=60.04 Aligned_cols=80 Identities=15% Similarity=0.267 Sum_probs=64.3
Q ss_pred cHHHHHHHHHHhhCCCCcceecCCCCCcchhhHHHHHHHhcCCCCCCcccCcC----CHHHHHHHHHHHHHhcCCCCC--
Q psy7817 139 SAKKTLLRWVSNALPEHIKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQ----TNRHRLDTAFNVAESNLGIAR-- 212 (228)
Q Consensus 139 ~~~~~Ll~Wv~~~l~~~~~I~nf~~s~~DG~~l~~Li~~~~p~~~~~~~~~~~----~~~~n~~~a~~~A~~~lgip~-- 212 (228)
..++.+..|++..++..+ -.+|-..++||++||.|++.+.|+.+. .+... ...+|++..+..++ .+|+|.
T Consensus 17 ~~~~e~~~WIe~~l~~~i-~~~l~~~L~DGvvLCkL~N~l~P~~v~--kin~~~~~f~~~eNI~~FL~a~~-~~Gv~~~~ 92 (146)
T 1wyn_A 17 QKEAELRTWIEGLTGLSI-GPDFQKGLKDGTILCTLMNKLQPGSVP--KINRSMQNWHQLENLSNFIKAMV-SYGMNPVD 92 (146)
T ss_dssp THHHHHHHHHHHHHCCCC-CSCHHHHHHTTSHHHHHHHHHCTTSCS--CCCCSSCHHHHHHHHHHHHHHHH-HHTCCSSS
T ss_pred HHHHHHHHHHHHHhCCCC-cHHHHHHHccHHHHHHHHHHhCCCCcc--ccccccccccHHHHHHHHHHHHH-HcCCCccc
Confidence 457899999999997633 256778899999999999999999873 33222 35689999999998 899997
Q ss_pred CCChhhhccc
Q psy7817 213 LLDPEVRQFL 222 (228)
Q Consensus 213 ll~p~Di~~~ 222 (228)
+..+.|+...
T Consensus 93 lF~~~DL~e~ 102 (146)
T 1wyn_A 93 LFEANDLFES 102 (146)
T ss_dssp CCCHHHHHTC
T ss_pred ccChhHHHhc
Confidence 6899998764
No 62
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=97.92 E-value=9.2e-06 Score=62.24 Aligned_cols=81 Identities=14% Similarity=0.277 Sum_probs=64.2
Q ss_pred cHHHHHHHHHHhhCCCCcce-----ecCCCCCcchhhHHHHHHHhcC---CCCCCcccCcC----CHHHHHHHHHHHHHh
Q psy7817 139 SAKKTLLRWVSNALPEHIKV-----SDFGPSWRDGHAFLSVIDNIQK---DLVDIPALSKQ----TNRHRLDTAFNVAES 206 (228)
Q Consensus 139 ~~~~~Ll~Wv~~~l~~~~~I-----~nf~~s~~DG~~l~~Li~~~~p---~~~~~~~~~~~----~~~~n~~~a~~~A~~ 206 (228)
..++.+..|++..++..++. .+|-...+||++||.|++.+.| +.++ .+... ...+|++..+..++
T Consensus 17 ~~e~e~~~WIe~~l~~~l~~~~~~~~~~~~~LkDGvvLCkL~N~l~P~~~~~i~--kIn~~~~~F~~~eNI~~FL~ac~- 93 (155)
T 1wym_A 17 DLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVK--KIQASTMAFKQMEQISQFLQAAE- 93 (155)
T ss_dssp HHHHHHHHHHHHHSSSCCCCCCSSHHHHHHHHHTSHHHHHHHHHHSCTTTCSCC--CCCCCCCHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHcchHHHHHHHHHhccccCCCcC--cccCCCccccHHHHHHHHHHHHH-
Confidence 45779999999999864332 4777889999999999999999 8775 33322 24689999999998
Q ss_pred cCCCCC--CCChhhhccc
Q psy7817 207 NLGIAR--LLDPEVRQFL 222 (228)
Q Consensus 207 ~lgip~--ll~p~Di~~~ 222 (228)
.+|||. +..+.|+...
T Consensus 94 ~~Gv~~~~lF~t~DL~e~ 111 (155)
T 1wym_A 94 RYGINTTDIFQTVDLWEG 111 (155)
T ss_dssp HHTCCTTTCCCHHHHHTC
T ss_pred HcCCCccccCChHHHHhc
Confidence 799998 5689998754
No 63
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=97.91 E-value=2.1e-05 Score=60.51 Aligned_cols=82 Identities=12% Similarity=0.204 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhhCCCCcc-eecCCCCCcchhhHHHHHHHhcCCCCCC---cccCcCCHHHHHHHHHHHHHhcCCCCC--C
Q psy7817 140 AKKTLLRWVSNALPEHIK-VSDFGPSWRDGHAFLSVIDNIQKDLVDI---PALSKQTNRHRLDTAFNVAESNLGIAR--L 213 (228)
Q Consensus 140 ~~~~Ll~Wv~~~l~~~~~-I~nf~~s~~DG~~l~~Li~~~~p~~~~~---~~~~~~~~~~n~~~a~~~A~~~lgip~--l 213 (228)
..+.+..|++..++..++ -.+|-...+||++||.|++.+.|+.+.. .....-...+|+...+..++ .+|+|. +
T Consensus 12 ~~~e~~~WIe~~l~~~l~~~~~l~~~LkdGvvLCkL~N~l~P~~i~kI~~~~~~~f~~~eNI~~FL~a~~-~~Gv~~~~l 90 (159)
T 1p2x_A 12 RVDEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIH-GIGLPEIFH 90 (159)
T ss_dssp HHHHHHHHHHHHHTSCCCCGGGHHHHTTTSHHHHHHHHHHCTTSCCCCCCCSSCCTTHHHHHHHHHHHHH-HTTCCGGGC
T ss_pred HHHHHHHHHHHHhCCCCCChHHHHHHHcchHHHHHHHHHhCCCCccccccccCCcchHHHHHHHHHHHHH-HcCCCcccc
Confidence 357889999999876422 2478889999999999999999997731 11222357799999999998 899998 5
Q ss_pred CChhhhccc
Q psy7817 214 LDPEVRQFL 222 (228)
Q Consensus 214 l~p~Di~~~ 222 (228)
..+.|+...
T Consensus 91 F~~~DL~e~ 99 (159)
T 1p2x_A 91 FELTDIYEG 99 (159)
T ss_dssp CCHHHHSSC
T ss_pred cCHHHHHhc
Confidence 689998754
No 64
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}
Probab=97.90 E-value=5.3e-05 Score=56.69 Aligned_cols=99 Identities=16% Similarity=0.293 Sum_probs=77.0
Q ss_pred HHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcCCC--CCCccchhhhHHHHHHHHHhCCceee
Q psy7817 7 KKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGR--NLRRPHFLSNANTALQFLQSKRIKLV 84 (228)
Q Consensus 7 ~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~--~~~~~~~i~N~~~~l~~~~~~g~~~~ 84 (228)
+..+..|||..|.-. +..+ +++.+|...|.|++.+. +.+|..+.+ .....+.++|....=+..+++||...
T Consensus 8 R~eLL~WiN~~L~~n-----~tkI-E~l~sGAaYCQlmD~lf-g~i~l~kVkf~a~~e~e~i~NfKlLQ~~F~k~~I~k~ 80 (145)
T 4abo_I 8 RQELLAWINQVTSLG-----LTRI-EDCGKGYAMIQIFDSIY-QDIPLKKVNFECNNEYQYINNWKVLQQVFLKKGIDKV 80 (145)
T ss_dssp HHHHHHHHHHHHTCC-----CCSG-GGGGGSHHHHHHHHHHH-CCSCTTTSCSSCCSHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHcCCC-----cchH-HHccccHHHHHHHHHHh-cCcchhhcccCCCCHHHHHHHHHHHHHHHHHcCCCCc
Confidence 567899999999432 3333 67899999999999999 567765433 33466789999988888899999864
Q ss_pred ecCCCCccCCchhHHHHHHHHHHHHhhhh
Q psy7817 85 NINSSDLVDGRPAVVLGLIWTIILYFQIE 113 (228)
Q Consensus 85 ~i~~~di~~g~~~~iL~llw~li~~~~i~ 113 (228)
|..+.++.|.....+-++=-+-.+|...
T Consensus 81 -ipV~kLvKgk~QDNlEFlQWfkkf~d~n 108 (145)
T 4abo_I 81 -VDPERLSRCKMQDNLEFVQWAKRFWDQY 108 (145)
T ss_dssp -CCHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred -cCHHHHhccchHhHHHHHHHHHHHHHhc
Confidence 9999999999998888876666666543
No 65
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.87 E-value=3e-05 Score=57.15 Aligned_cols=104 Identities=12% Similarity=0.119 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCc-CCCCCCccchhhhHHHHH-HHHHhCCc
Q psy7817 4 RVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVE-KGRNLRRPHFLSNANTAL-QFLQSKRI 81 (228)
Q Consensus 4 ~~q~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~-~~~~~~~~~~i~N~~~~l-~~~~~~g~ 81 (228)
+-+.+.+.+|++..= ....+.|+..||.||+.+.+++....|+.+... .....+...++.|=+..= .++++.|+
T Consensus 14 ~ee~~el~~WL~~l~----Ls~~~rn~rRDFSdG~lvAEIl~~y~Pk~Vdlh~y~~~~S~~~K~~NW~~ln~kvl~kl~~ 89 (127)
T 2ee7_A 14 EEALHQLYLWVDNIP----LSRPKRNLSRDFSDGVLVAEVIKFYFPKMVEMHNYVPANSLQQKLSNWGHLNRKVLKRLNF 89 (127)
T ss_dssp HHHHHHHHHHHHHSC----CSCCSSCHHHHHTTSHHHHHHHHHHCTTTCCCSSCCCCSSHHHHHHHHHHHHHHTTGGGTC
T ss_pred HHHHHHHHHHHHcCC----CCCCCCchhhhccchhHHHHHHHHHCcCcccccccCCCCcHHHHHHhHHHHHHHHHHHcCC
Confidence 446677899999532 133579999999999999999999999877654 233344678899988874 78889999
Q ss_pred eeeecCCCCccCCchhHHHHHHHHHHHHhh
Q psy7817 82 KLVNINSSDLVDGRPAVVLGLIWTIILYFQ 111 (228)
Q Consensus 82 ~~~~i~~~di~~g~~~~iL~llw~li~~~~ 111 (228)
.+..-..+.|+.|.+.++-.|+++|+.++.
T Consensus 90 ~l~~~~i~~i~~~~~Gaie~lL~~L~~~l~ 119 (127)
T 2ee7_A 90 SVPDDVMRKIAQCAPGVVELVLIPLRQRLE 119 (127)
T ss_dssp CCCHHHHHHHHTTCTTTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 877666788999999999999999977653
No 66
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=97.87 E-value=1.9e-05 Score=63.13 Aligned_cols=82 Identities=12% Similarity=0.204 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhhCCCCcc-eecCCCCCcchhhHHHHHHHhcCCCCCC---cccCcCCHHHHHHHHHHHHHhcCCCCC--C
Q psy7817 140 AKKTLLRWVSNALPEHIK-VSDFGPSWRDGHAFLSVIDNIQKDLVDI---PALSKQTNRHRLDTAFNVAESNLGIAR--L 213 (228)
Q Consensus 140 ~~~~Ll~Wv~~~l~~~~~-I~nf~~s~~DG~~l~~Li~~~~p~~~~~---~~~~~~~~~~n~~~a~~~A~~~lgip~--l 213 (228)
..+.+..|++..+...++ ..+|-..++||++||.|++.+.|+.+.. .....-...+|++..+..++ .+|||. +
T Consensus 56 ~~~e~~~WIe~~l~~~l~~~~~f~~~LrDGvvLCkLiN~l~P~sv~kI~~~s~~~f~~~eNI~~FL~ac~-~~Gvp~~~l 134 (203)
T 1p5s_A 56 RVDEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIH-GIGLPEIFH 134 (203)
T ss_dssp HHHHHHHHHHHHHTSCCCCGGGHHHHHTTSHHHHHHHHHHCTTSCCCCCCCSSSCCCHHHHHHHHHHHHH-HTTCCGGGC
T ss_pred HHHHHHHHHHHHhCCCCCChHHHHHHHcchHHHHHHHHHhCCCCcccccCCCCCcchHHHHHHHHHHHHH-HcCCCcccc
Confidence 467899999999875422 3578889999999999999999997721 11122367899999999998 899998 4
Q ss_pred CChhhhccc
Q psy7817 214 LDPEVRQFL 222 (228)
Q Consensus 214 l~p~Di~~~ 222 (228)
..+.|+...
T Consensus 135 F~t~DL~e~ 143 (203)
T 1p5s_A 135 FELTDIYEG 143 (203)
T ss_dssp CCHHHHHSC
T ss_pred cCHHHHHhc
Confidence 799998764
No 67
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=97.83 E-value=2.7e-05 Score=71.77 Aligned_cols=98 Identities=19% Similarity=0.217 Sum_probs=68.0
Q ss_pred HHHHHHHhhhccC------CCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcCC--CC-CCccchhhhHHHHHHHH-Hh
Q psy7817 9 TFVNWINSYLSKR------HPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKG--RN-LRRPHFLSNANTALQFL-QS 78 (228)
Q Consensus 9 ~~~~WiN~~L~~~------~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~--~~-~~~~~~i~N~~~~l~~~-~~ 78 (228)
....|++....-. .+...+.||.+.|+||++||+|+|.+.|+.++..+. .+ ...+..++|++..|+++ +.
T Consensus 9 ~~~~Wl~~~~~l~~~~~~~~~~~~~~~l~~~L~~G~~Lc~l~n~l~p~~v~~~~~~~~~~~~~f~~~~ni~~Fl~~~~~~ 88 (587)
T 3ky9_A 9 QCTHWLIQCRVLPPSHRVTWEGAQVCELAQALRDGVLLCQLLNNLLPHAINLREVNLRPQMSQFLCLKNIRTFLSTCCEK 88 (587)
T ss_dssp HHHHHHHHTTCSCTTSTTTSTTCCHHHHHHHHSSTHHHHHHHHHHSTTSSCGGGSCSSCTTBHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCcccccCCCCChhhHHHHhCcHHHHHHHHHHhCCCCCCccccCCCccccchHHHHHHHHHHHHHHHH
Confidence 4678999864210 122346899999999999999999999998864322 22 22588999999999999 77
Q ss_pred CCceeee-cCCCCccCCc-hhHHHHHHHHH
Q psy7817 79 KRIKLVN-INSSDLVDGR-PAVVLGLIWTI 106 (228)
Q Consensus 79 ~g~~~~~-i~~~di~~g~-~~~iL~llw~l 106 (228)
.|++-.. ..+.|++++. ...++.-|-.|
T Consensus 89 ~g~~~~~~f~~~Dl~~~~~~~~V~~~l~~l 118 (587)
T 3ky9_A 89 FGLKRSELFEAFDLFDVQDFGKVIYTLSAL 118 (587)
T ss_dssp TCCCTTSSCCHHHHHTCSCHHHHHHHHHHH
T ss_pred cCCCHHHcCCchhhhccCCcchHHHHHHHH
Confidence 9987332 5677888764 33333333333
No 68
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}
Probab=97.81 E-value=1.4e-05 Score=63.33 Aligned_cols=82 Identities=11% Similarity=0.203 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhhCCCCcc-eecCCCCCcchhhHHHHHHHhcCCCCCCcccCc------------CCHHHHHHHHHHHHHh
Q psy7817 140 AKKTLLRWVSNALPEHIK-VSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSK------------QTNRHRLDTAFNVAES 206 (228)
Q Consensus 140 ~~~~Ll~Wv~~~l~~~~~-I~nf~~s~~DG~~l~~Li~~~~p~~~~~~~~~~------------~~~~~n~~~a~~~A~~ 206 (228)
..+.+..|++..++..++ -.+|....+||++||.|++.+.|+.++...+.. -...+|+...+..++
T Consensus 48 ~~~e~~~WIe~~lg~~l~~~~~l~~~LrdGvvLCkL~N~l~Pg~vp~kkI~~~~~~~~~~~~~~F~~~eNI~~FL~ac~- 126 (193)
T 3i6x_A 48 HLEEAKRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVIQWLNAMD- 126 (193)
T ss_dssp HHHHHHHHHHHHHSSCCCCGGGHHHHHTTSHHHHHHHHHHCTTTCCGGGSTTTTCHHHHHSCCCGGGHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCCCCChHHHHHHhccHHHHHHHHHHHCCCCCCccccCCcccccccCcccchHHHHHHHHHHHHHH-
Confidence 445789999999986422 247889999999999999999999987555421 124689999999998
Q ss_pred cCCCCC--CCChhhhccc
Q psy7817 207 NLGIAR--LLDPEVRQFL 222 (228)
Q Consensus 207 ~lgip~--ll~p~Di~~~ 222 (228)
.+|+|. +..+.|+...
T Consensus 127 ~~Gvp~~~lFet~DL~e~ 144 (193)
T 3i6x_A 127 EIGLPKIFYPETTDIYDR 144 (193)
T ss_dssp HHTCCGGGCCCHHHHHSC
T ss_pred HcCCCcccCCCcHHHhcC
Confidence 899997 6799998753
No 69
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}
Probab=97.78 E-value=1.6e-05 Score=62.85 Aligned_cols=82 Identities=11% Similarity=0.204 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhhCCCCcc-eecCCCCCcchhhHHHHHHHhcCCCCCCcccC------------cCCHHHHHHHHHHHHHh
Q psy7817 140 AKKTLLRWVSNALPEHIK-VSDFGPSWRDGHAFLSVIDNIQKDLVDIPALS------------KQTNRHRLDTAFNVAES 206 (228)
Q Consensus 140 ~~~~Ll~Wv~~~l~~~~~-I~nf~~s~~DG~~l~~Li~~~~p~~~~~~~~~------------~~~~~~n~~~a~~~A~~ 206 (228)
..+.+..|++..++..++ ..+|-...+||++||.|++.+.|+.++...+. .-...+|++..+..++
T Consensus 26 ~~~e~~~WIe~~lg~~lp~~~~f~~~LrDGvvLCkL~N~l~P~sv~~~kI~~~~~~~~~~~~~~f~~~eNI~~FL~ac~- 104 (190)
T 2rr8_A 26 HLEEAKRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVIQWLNAMD- 104 (190)
T ss_dssp HHHHHHHHHHHHSCCCCCCHHHHHHHHSSHHHHHHHHHHSCTTTSCSSCSSTTTCHHHHHTCCCSSTHHHHHHHHHGGG-
T ss_pred HHHHHHHHHHHHhCCCCCChhHHHHHHcchhhHHHHHHHhCCCCcccccccccccccccCCCCcchHHHHHHHHHHHHH-
Confidence 447899999999976422 25788899999999999999999988754432 1234689999999998
Q ss_pred cCCCCC--CCChhhhccc
Q psy7817 207 NLGIAR--LLDPEVRQFL 222 (228)
Q Consensus 207 ~lgip~--ll~p~Di~~~ 222 (228)
.+|+|. +..+.|+...
T Consensus 105 ~~Gvp~~~lFet~DL~e~ 122 (190)
T 2rr8_A 105 EIGLPKIFYPETTDIYDR 122 (190)
T ss_dssp GTTCCSTTCCCHHHHTCT
T ss_pred HcCCCccccCCHHHHHhc
Confidence 799998 5689998754
No 70
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A
Probab=97.74 E-value=0.00013 Score=60.11 Aligned_cols=99 Identities=15% Similarity=0.273 Sum_probs=77.9
Q ss_pred HHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcCCC--CCCccchhhhHHHHHHHHHhCCceee
Q psy7817 7 KKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGR--NLRRPHFLSNANTALQFLQSKRIKLV 84 (228)
Q Consensus 7 ~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~--~~~~~~~i~N~~~~l~~~~~~g~~~~ 84 (228)
+..+..|||..|.-. +.-+ +++.+|...|+|++.+.|+.+|..+.+ +....+.++|....=+...++|+..
T Consensus 17 R~elL~WiN~~L~~~-----~~ki-Eel~tGaayCQlmd~l~P~~i~l~kVkf~a~~e~e~i~N~k~LQ~~F~k~~I~k- 89 (268)
T 2r8u_A 17 RHDMLAWINESLQLN-----LTKI-EQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDK- 89 (268)
T ss_dssp HHHHHHHHHHHHTCC-----CCCG-GGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHHTTCCC-
T ss_pred HHHHHHHHHHHhcCC-----cchH-HHcccchHHHHHHHHHccCCCchhhccCCCCCHHHHHHHHHHHHHHHHHcCCCC-
Confidence 567899999999433 3333 678999999999999999998876433 3346688999998888899999985
Q ss_pred ecCCCCccCCchhHHHHHHHHHHHHhhh
Q psy7817 85 NINSSDLVDGRPAVVLGLIWTIILYFQI 112 (228)
Q Consensus 85 ~i~~~di~~g~~~~iL~llw~li~~~~i 112 (228)
.|..+.++.|+....+-++=.+-.+|..
T Consensus 90 ~ipV~kLvkgk~qDNlEFlqWfkkf~d~ 117 (268)
T 2r8u_A 90 IIPVDKLVKGKFQDNFEFVQWFKKFFDA 117 (268)
T ss_dssp CCCHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHhccCchhHHHHHHHHHHHHHH
Confidence 4999999999998888777555555543
No 71
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.00037 Score=51.20 Aligned_cols=99 Identities=12% Similarity=0.229 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcCCC--CCCccchhhhHHHHHHHHHhCCcee
Q psy7817 6 QKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGR--NLRRPHFLSNANTALQFLQSKRIKL 83 (228)
Q Consensus 6 q~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~--~~~~~~~i~N~~~~l~~~~~~g~~~ 83 (228)
-+..+..|||..|.... .- .+++.+|...|.+++.+.| .+|..+.+ +....+.+.|....=+...+.|+..
T Consensus 11 sR~elL~WiN~~L~~n~-----~k-iEel~tGaayCQl~d~l~g-~v~l~kVkf~a~~e~e~~~N~k~LQ~~f~k~~I~k 83 (127)
T 2qjx_A 11 SRTELLTWLNGLLNLNY-----KK-IEECGTGAAYCQIMDSIYG-DLPMNRVKFNATAEYEFQTNYKILQSCFSRHGIEK 83 (127)
T ss_dssp CHHHHHHHHHHHHTCCC-----CS-GGGGGGSHHHHHHHHHHHC-CSCGGGSCTTCCSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHcCCc-----cH-HHHccchHHHHHHHhhhcc-ccCccccCCCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 35679999999995432 22 2567999999999999995 46655433 3345677899998888889999985
Q ss_pred eecCCCCccCCchhHHHHHHHHHHHHhhh
Q psy7817 84 VNINSSDLVDGRPAVVLGLIWTIILYFQI 112 (228)
Q Consensus 84 ~~i~~~di~~g~~~~iL~llw~li~~~~i 112 (228)
.|..+.++.|.....+-++=-+-..|..
T Consensus 84 -~ipV~kLvKgrfQDNlEFlQWfkkf~d~ 111 (127)
T 2qjx_A 84 -TVYVDKLIRCKFQDNLEFLQWLKKHWIR 111 (127)
T ss_dssp -CCCHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred -ccCHHHHhccCchhHHHHHHHHHHHHHh
Confidence 4999999999988888776444444543
No 72
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.54 E-value=0.00014 Score=53.60 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=57.0
Q ss_pred cHHHHHHHHHHhhCCCCcceecCCCCCcchhhHHHHHHHhcCCCCCCcccCcCC----HHHHHHHHHHHHHhcCCCCCCC
Q psy7817 139 SAKKTLLRWVSNALPEHIKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQT----NRHRLDTAFNVAESNLGIARLL 214 (228)
Q Consensus 139 ~~~~~Ll~Wv~~~l~~~~~I~nf~~s~~DG~~l~~Li~~~~p~~~~~~~~~~~~----~~~n~~~a~~~A~~~lgip~ll 214 (228)
.....|++|++. +.-..++.|+..||+||..++.|++.|.|..+|+..+.+.+ +..|.+.-=.-.-+++|++ +
T Consensus 15 ee~~el~~WL~~-l~Ls~~~rn~rRDFSdG~lvAEIl~~y~Pk~Vdlh~y~~~~S~~~K~~NW~~ln~kvl~kl~~~--l 91 (127)
T 2ee7_A 15 EALHQLYLWVDN-IPLSRPKRNLSRDFSDGVLVAEVIKFYFPKMVEMHNYVPANSLQQKLSNWGHLNRKVLKRLNFS--V 91 (127)
T ss_dssp HHHHHHHHHHHH-SCCSCCSSCHHHHHTTSHHHHHHHHHHCTTTCCCSSCCCCSSHHHHHHHHHHHHHHTTGGGTCC--C
T ss_pred HHHHHHHHHHHc-CCCCCCCCchhhhccchhHHHHHHHHHCcCcccccccCCCCcHHHHHHhHHHHHHHHHHHcCCC--C
Confidence 456689999994 43325788999999999999999999999999988887653 4456555422223478874 5
Q ss_pred Chhhhc
Q psy7817 215 DPEVRQ 220 (228)
Q Consensus 215 ~p~Di~ 220 (228)
++++|.
T Consensus 92 ~~~~i~ 97 (127)
T 2ee7_A 92 PDDVMR 97 (127)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 565443
No 73
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=97.50 E-value=8.4e-05 Score=54.46 Aligned_cols=80 Identities=11% Similarity=0.246 Sum_probs=60.3
Q ss_pred cHHHHHHHHHHhhCCCC---cce---ec-CCCCCcchhhHHHHHHHhcCCCCCCcccCcC-----CHHHHHHHHHHHHHh
Q psy7817 139 SAKKTLLRWVSNALPEH---IKV---SD-FGPSWRDGHAFLSVIDNIQKDLVDIPALSKQ-----TNRHRLDTAFNVAES 206 (228)
Q Consensus 139 ~~~~~Ll~Wv~~~l~~~---~~I---~n-f~~s~~DG~~l~~Li~~~~p~~~~~~~~~~~-----~~~~n~~~a~~~A~~ 206 (228)
..++.+..|++..+... .++ .+ |-...+||++||.|++.+.|+.++ .+... ...+|++..+..++
T Consensus 6 ~~e~e~~~WI~~~~~l~~~~~~~~~~~~~l~~~L~dGvvLCkL~N~l~Pg~i~--ki~~~~~~~f~~~eNI~~FL~a~~- 82 (121)
T 1wyr_A 6 SGEEQIVTWLISLGVLESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVE--KFCLDPQTEADCINNINDFLKGCA- 82 (121)
T ss_dssp CSHHHHHHHHHHHTSSCCCSSCCSCHHHHHHHHHHHSHHHHHHHHHHSTTCCS--CCCSSCCSHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhcCcCCcccCCCCcHHHHHHHHccHHHHHHHHHHhCCCCCC--cCCCCCcchHHHHHHHHHHHHHHH-
Confidence 35678999999985421 112 23 467889999999999999999886 33222 25689999999998
Q ss_pred cCCCCCCCChhhhccc
Q psy7817 207 NLGIARLLDPEVRQFL 222 (228)
Q Consensus 207 ~lgip~ll~p~Di~~~ 222 (228)
.+|+ .+..+.|+...
T Consensus 83 ~~g~-~~F~~~DL~e~ 97 (121)
T 1wyr_A 83 TLQV-EIFDPDDLYSG 97 (121)
T ss_dssp HHTC-CCCCHHHHHTC
T ss_pred HcCC-CccCHHHHHcC
Confidence 6898 68889888754
No 74
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}
Probab=97.49 E-value=0.00011 Score=54.12 Aligned_cols=81 Identities=9% Similarity=0.155 Sum_probs=60.7
Q ss_pred cHHHHHHHHHHhhC--CCC-c---ceecC-CCCCcchhhHHHHHHHhcCCCCCCcccCcC-----CHHHHHHHHHHHHHh
Q psy7817 139 SAKKTLLRWVSNAL--PEH-I---KVSDF-GPSWRDGHAFLSVIDNIQKDLVDIPALSKQ-----TNRHRLDTAFNVAES 206 (228)
Q Consensus 139 ~~~~~Ll~Wv~~~l--~~~-~---~I~nf-~~s~~DG~~l~~Li~~~~p~~~~~~~~~~~-----~~~~n~~~a~~~A~~ 206 (228)
..++.+.+|++..+ +.. . .-.+| ....+||++||.|++.+.|+.++ .+... ...+|++..+..+++
T Consensus 12 ~~~~e~~~WI~~~~~L~~~~~~~~~~~~~l~~~LkdGvvLCkLiN~l~Pg~i~--kI~~~~~~~f~~~eNI~~FL~a~~~ 89 (126)
T 2l3g_A 12 NSAEQTVTWLITLGVLESPKKTISDPEGFLQASLKDGVVLCRLLERLLPGTIE--KVYPEPRSESECLSNIREFLRGCGA 89 (126)
T ss_dssp CHHHHHHHHHHHTTSSCCCSSCCSCHHHHHHHHHTTSHHHHHHHHHHSTTCCS--CCCSSCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCCCChhhHHHHHHccHHHHHHHHHHhCCCCCC--ccCCCCCcchHHHHHHHHHHHHHHH
Confidence 46789999999984 331 1 22355 67889999999999999999886 33222 236899999999994
Q ss_pred cCCCCCCCChhhhccc
Q psy7817 207 NLGIARLLDPEVRQFL 222 (228)
Q Consensus 207 ~lgip~ll~p~Di~~~ 222 (228)
.+|+ .+..+.|+...
T Consensus 90 ~~g~-~lF~t~DL~e~ 104 (126)
T 2l3g_A 90 SLRL-ETFDANDLYQG 104 (126)
T ss_dssp TSCC-CCCCHHHHHTT
T ss_pred hCCC-CccCHHHHHhC
Confidence 3998 56788888754
No 75
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A
Probab=97.44 E-value=0.00033 Score=57.78 Aligned_cols=80 Identities=11% Similarity=0.243 Sum_probs=61.5
Q ss_pred cHHHHHHHHHHhhCCCC-cceecCCCCCcchhhHHHHHHHhcCCCCCCcccCcC-----CHHHHHHHHHHHHHhcCCCCC
Q psy7817 139 SAKKTLLRWVSNALPEH-IKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQ-----TNRHRLDTAFNVAESNLGIAR 212 (228)
Q Consensus 139 ~~~~~Ll~Wv~~~l~~~-~~I~nf~~s~~DG~~l~~Li~~~~p~~~~~~~~~~~-----~~~~n~~~a~~~A~~~lgip~ 212 (228)
.....||.|+|..|... .+| .+..+|.+||.|++.+.|+.+++..+.-. +.++|.. .++.|-.++||++
T Consensus 15 ~sR~elL~WiN~~L~~~~~ki----Eel~tGaayCQlmd~l~P~~i~l~kVkf~a~~e~e~i~N~k-~LQ~~F~k~~I~k 89 (268)
T 2r8u_A 15 LSRHDMLAWINESLQLNLTKI----EQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFK-ILQAGFKRMGVDK 89 (268)
T ss_dssp CCHHHHHHHHHHHHTCCCCCG----GGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHH-HHHHHHHHTTCCC
T ss_pred cCHHHHHHHHHHHhcCCcchH----HHcccchHHHHHHHHHccCCCchhhccCCCCCHHHHHHHHH-HHHHHHHHcCCCC
Confidence 35689999999999853 444 57789999999999999999998887543 2344443 4555556999999
Q ss_pred CCChhhhcccC
Q psy7817 213 LLDPEVRQFLF 223 (228)
Q Consensus 213 ll~p~Di~~~~ 223 (228)
.+..+.++.+.
T Consensus 90 ~ipV~kLvkgk 100 (268)
T 2r8u_A 90 IIPVDKLVKGK 100 (268)
T ss_dssp CCCHHHHTTTC
T ss_pred ccCHHHHhccC
Confidence 99998887653
No 76
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}
Probab=97.25 E-value=0.00079 Score=50.33 Aligned_cols=78 Identities=15% Similarity=0.292 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhhCCCC-cceecCCCCCcchhhHHHHHHHhcCCCCCCcccCcC-----CHHHHHHHHHHHHHhcCCCCCC
Q psy7817 140 AKKTLLRWVSNALPEH-IKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQ-----TNRHRLDTAFNVAESNLGIARL 213 (228)
Q Consensus 140 ~~~~Ll~Wv~~~l~~~-~~I~nf~~s~~DG~~l~~Li~~~~p~~~~~~~~~~~-----~~~~n~~~a~~~A~~~lgip~l 213 (228)
....||.|+|..|... .+| .+..+|-+||.|++.+. +.+++..+.-. +-++|.. .++.|-.++||++.
T Consensus 7 SR~eLL~WiN~~L~~n~tkI----E~l~sGAaYCQlmD~lf-g~i~l~kVkf~a~~e~e~i~NfK-lLQ~~F~k~~I~k~ 80 (145)
T 4abo_I 7 SRQELLAWINQVTSLGLTRI----EDCGKGYAMIQIFDSIY-QDIPLKKVNFECNNEYQYINNWK-VLQQVFLKKGIDKV 80 (145)
T ss_dssp CHHHHHHHHHHHHTCCCCSG----GGGGGSHHHHHHHHHHH-CCSCTTTSCSSCCSHHHHHHHHH-HHHHHHHHHTCCCC
T ss_pred cHHHHHHHHHHHcCCCcchH----HHccccHHHHHHHHHHh-cCcchhhcccCCCCHHHHHHHHH-HHHHHHHHcCCCCc
Confidence 3578999999998743 344 57789999999999999 56888877532 3345544 45555568999999
Q ss_pred CChhhhcccC
Q psy7817 214 LDPEVRQFLF 223 (228)
Q Consensus 214 l~p~Di~~~~ 223 (228)
+..+.++.+.
T Consensus 81 ipV~kLvKgk 90 (145)
T 4abo_I 81 VDPERLSRCK 90 (145)
T ss_dssp CCHHHHTTTC
T ss_pred cCHHHHhccc
Confidence 9988877653
No 77
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.0026 Score=46.69 Aligned_cols=78 Identities=17% Similarity=0.242 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhhCCCC-cceecCCCCCcchhhHHHHHHHhcCCCCCCcccCcC-----CHHHHHHHHHHHHHhcCCCCCC
Q psy7817 140 AKKTLLRWVSNALPEH-IKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQ-----TNRHRLDTAFNVAESNLGIARL 213 (228)
Q Consensus 140 ~~~~Ll~Wv~~~l~~~-~~I~nf~~s~~DG~~l~~Li~~~~p~~~~~~~~~~~-----~~~~n~~~a~~~A~~~lgip~l 213 (228)
....||.|+|..+... ..| .+..+|.+||.|++.+.|. +++..+.-. +-++|. ..++.|-.++||++.
T Consensus 11 sR~elL~WiN~~L~~n~~ki----Eel~tGaayCQl~d~l~g~-v~l~kVkf~a~~e~e~~~N~-k~LQ~~f~k~~I~k~ 84 (127)
T 2qjx_A 11 SRTELLTWLNGLLNLNYKKI----EECGTGAAYCQIMDSIYGD-LPMNRVKFNATAEYEFQTNY-KILQSCFSRHGIEKT 84 (127)
T ss_dssp CHHHHHHHHHHHHTCCCCSG----GGGGGSHHHHHHHHHHHCC-SCGGGSCTTCCSHHHHHHHH-HHHHHHHHHTTCCCC
T ss_pred CHHHHHHHHHHHHcCCccHH----HHccchHHHHHHHhhhccc-cCccccCCCCCCHHHHHHHH-HHHHHHHHHcCCCCc
Confidence 4678999999998753 445 4557899999999999965 777776522 223444 445555569999999
Q ss_pred CChhhhcccC
Q psy7817 214 LDPEVRQFLF 223 (228)
Q Consensus 214 l~p~Di~~~~ 223 (228)
+..+.++.+.
T Consensus 85 ipV~kLvKgr 94 (127)
T 2qjx_A 85 VYVDKLIRCK 94 (127)
T ss_dssp CCHHHHTTTC
T ss_pred cCHHHHhccC
Confidence 9988877653
No 78
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=95.90 E-value=0.0036 Score=57.56 Aligned_cols=79 Identities=15% Similarity=0.319 Sum_probs=59.3
Q ss_pred HHHHHHHhh--CCCC-------cceecCCCCCcchhhHHHHHHHhcCCCCCCcccCcC------CHHHHHHHHHHHHHhc
Q psy7817 143 TLLRWVSNA--LPEH-------IKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQ------TNRHRLDTAFNVAESN 207 (228)
Q Consensus 143 ~Ll~Wv~~~--l~~~-------~~I~nf~~s~~DG~~l~~Li~~~~p~~~~~~~~~~~------~~~~n~~~a~~~A~~~ 207 (228)
.-.+|++.. ++.. -++.+|...++||++||.|+|.+.|+.++...+... ...+|+..-+..+.++
T Consensus 9 ~~~~Wl~~~~~l~~~~~~~~~~~~~~~l~~~L~~G~~Lc~l~n~l~p~~v~~~~~~~~~~~~~f~~~~ni~~Fl~~~~~~ 88 (587)
T 3ky9_A 9 QCTHWLIQCRVLPPSHRVTWEGAQVCELAQALRDGVLLCQLLNNLLPHAINLREVNLRPQMSQFLCLKNIRTFLSTCCEK 88 (587)
T ss_dssp HHHHHHHHTTCSCTTSTTTSTTCCHHHHHHHHSSTHHHHHHHHHHSTTSSCGGGSCSSCTTBHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCcccccCCCCChhhHHHHhCcHHHHHHHHHHhCCCCCCccccCCCccccchHHHHHHHHHHHHHHHH
Confidence 445788753 2211 246788899999999999999999999876555421 2358899989888558
Q ss_pred CCCCC--CCChhhhcc
Q psy7817 208 LGIAR--LLDPEVRQF 221 (228)
Q Consensus 208 lgip~--ll~p~Di~~ 221 (228)
+|+|. +..+.|+..
T Consensus 89 ~g~~~~~~f~~~Dl~~ 104 (587)
T 3ky9_A 89 FGLKRSELFEAFDLFD 104 (587)
T ss_dssp TCCCTTSSCCHHHHHT
T ss_pred cCCCHHHcCCchhhhc
Confidence 99997 688888763
No 79
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1
Probab=94.91 E-value=0.14 Score=39.06 Aligned_cols=68 Identities=13% Similarity=0.199 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCc---CC--CC-CCccchhhhHHHHHHHHHh
Q psy7817 6 QKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVE---KG--RN-LRRPHFLSNANTALQFLQS 78 (228)
Q Consensus 6 q~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~---~~--~~-~~~~~~i~N~~~~l~~~~~ 78 (228)
...++..|+|..-. ...+.++ +||.||++|..++..+.|..+... +. .+ .+..-++.|+...++.+.+
T Consensus 10 ~~~aLl~W~~tf~~----~~~~~~~-~dL~DG~~L~~iL~~IDp~~F~~~~l~~i~~~~~~nw~lr~~NLk~l~~~i~~ 83 (164)
T 1wix_A 10 LCDSLIIWLQTFKT----ASPCQDV-KQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDVGDNWRIKASNLKKVLHGITS 83 (164)
T ss_dssp HHHHHHHHHTTCCC----SSCCCSH-HHHTTSHHHHHHHHHHCTTTSCHHHHTTCCSGGGGCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC----CCCcCcH-HHhccHHHHHHHHHHhCccccCchHhhhhcccCcccHHHHHHHHHHHHHHHHH
Confidence 45789999999752 2234554 999999999999999998865421 11 11 1233467788777765544
No 80
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1
Probab=94.53 E-value=0.027 Score=43.18 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=36.5
Q ss_pred ccHHHHHHHHHHhhCCCCcceecCCCCCcchhhHHHHHHHhcCCCCC
Q psy7817 138 ESAKKTLLRWVSNALPEHIKVSDFGPSWRDGHAFLSVIDNIQKDLVD 184 (228)
Q Consensus 138 ~~~~~~Ll~Wv~~~l~~~~~I~nf~~s~~DG~~l~~Li~~~~p~~~~ 184 (228)
.....+|+.|+|..-.. .++.+| .++.||++|..+++.+.|..++
T Consensus 8 ~~~~~aLl~W~~tf~~~-~~~~~~-~dL~DG~~L~~iL~~IDp~~F~ 52 (164)
T 1wix_A 8 LPLCDSLIIWLQTFKTA-SPCQDV-KQLTNGVTMAQVLHQIDVAWFS 52 (164)
T ss_dssp CHHHHHHHHHHTTCCCS-SCCCSH-HHHTTSHHHHHHHHHHCTTTSC
T ss_pred hHHHHHHHHHHHHcCCC-CCcCcH-HHhccHHHHHHHHHHhCccccC
Confidence 45788999999875433 356666 6899999999999999999875
No 81
>3lhk_A Putative DNA binding protein MJ0014; MCSG, PSI-2, structural genomics; 2.20A {Methanocaldococcus jannaschii}
Probab=35.32 E-value=39 Score=24.71 Aligned_cols=95 Identities=19% Similarity=0.165 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCccchHHHhhhHH-----HHHHHHHHHcCCCCCCcCCCCCCccchhhhHHHHHHHHHh
Q psy7817 4 RVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGT-----KLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFLQS 78 (228)
Q Consensus 4 ~~q~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv-----~L~~Lle~l~~~~~~~~~~~~~~~~~~i~N~~~~l~~~~~ 78 (228)
+.|...+.+|+..+- ..+ .++.|...|. -|.+|++.+..+.+..-......|+-+- -.......+..
T Consensus 21 ~~Q~~~l~~~~~~~g------~~v-~~~~D~~SG~~~~Rp~l~~ll~~~~~g~id~vvv~~ldRL~R~-~~~~l~~~l~~ 92 (154)
T 3lhk_A 21 ERQIQLIKSYAEENG------WDI-QILKDIGSGLNEKRKNYKKLLKMVMNRKVEKVIIAYPDRLTRF-GFETLKEFFKS 92 (154)
T ss_dssp HHHHHHHHHHHHHTT------CCC-EEEEEESCTTCTTCHHHHHHHHHHHTTCEEEEEESSHHHHCSS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC------CEE-EEEEeccCCcCCCCHHHHHHHHHHHcCCCCEEEEEeCCccccc-HHHHHHHHHHH
Confidence 568888999887642 223 4444444444 4888888888775432111111111100 01122266788
Q ss_pred CCceeeecCCCCccCCchhHHHHHHHHHH
Q psy7817 79 KRIKLVNINSSDLVDGRPAVVLGLIWTII 107 (228)
Q Consensus 79 ~g~~~~~i~~~di~~g~~~~iL~llw~li 107 (228)
.|+.+..+.. |-.+..-++++.++-.+.
T Consensus 93 ~gv~~~~~~~-d~~~~~~~l~~~i~~~~a 120 (154)
T 3lhk_A 93 YGTEIVIINK-KHKTPQEELVEDLITIVS 120 (154)
T ss_dssp TTCEEEESCS-SCCCCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeC-CCCCcHHHHHHHHHHHHH
Confidence 9999987766 554444456666655443
No 82
>3g13_A Putative conjugative transposon recombinase; resolvase, PSI-II, target 11223F, structural genomics, prote structure initiative; 2.00A {Clostridium difficile}
Probab=20.99 E-value=87 Score=22.84 Aligned_cols=79 Identities=10% Similarity=0.122 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCccchHHHh-h------hHHHHHHHHHHHcCCCCCCcCCCCCCccch-hhhHHHHHHH
Q psy7817 4 RVQKKTFVNWINSYLSKRHPPLRIDDLTEDL-K------DGTKLLALLEVLSNEKLPVEKGRNLRRPHF-LSNANTALQF 75 (228)
Q Consensus 4 ~~q~~~~~~WiN~~L~~~~~~~~v~dl~~dl-~------DGv~L~~Lle~l~~~~~~~~~~~~~~~~~~-i~N~~~~l~~ 75 (228)
+.|++.+.+|+..+. +..+..++.|. . +=--|.+|++.+..+.+..-.....+|+-+ ..-+...++.
T Consensus 26 ~~Q~~~~~~~a~~~~-----g~~~~~~~~D~g~Sg~~~~~Rp~l~~ll~~~~~g~id~vvv~~ldRl~R~~~~~~~~~~~ 100 (169)
T 3g13_A 26 KSQVQYYTDMIKKNK-----EWVLADIYADEAITGTQVTKREDFQRMINDCMNGEIDMVFTKSISRFARNTLDTLKYVRM 100 (169)
T ss_dssp HHHHHHHHHHHHTCT-----TEEEEEEEEEEC------CCSHHHHHHHHHHHTTCCSEEEESCHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC-----CCeEEEEEeeCCccCCCcCCCHHHHHHHHHHHcCCCcEEEEEeccccccChHHHHHHHHH
Confidence 578889999987642 12222222332 1 223468899988877653222222222222 2233344455
Q ss_pred HHhCCceeeecC
Q psy7817 76 LQSKRIKLVNIN 87 (228)
Q Consensus 76 ~~~~g~~~~~i~ 87 (228)
+...|+.+..+.
T Consensus 101 l~~~gv~l~~~~ 112 (169)
T 3g13_A 101 LKERNIAVYFED 112 (169)
T ss_dssp HHTTTCEEEETT
T ss_pred HHHcCCEEEEec
Confidence 677999987655
Done!