RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7817
(228 letters)
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology
domain, structural protein; 2.00A {Mus musculus} SCOP:
a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Length = 245
Score = 216 bits (550), Expect = 5e-71
Identities = 95/222 (42%), Positives = 132/222 (59%), Gaps = 21/222 (9%)
Query: 1 EQERVQKKTFVNWINSYLSKRH---PPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKG 57
E++RVQKKTF W+N +L K I DL EDL+DG L++LLEVLS + LP EKG
Sbjct: 8 ERDRVQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPREKG 67
Query: 58 RNLRRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTR 117
R R H L N AL +L+ +++KLVNI + D+ DG P + LGLIWTIIL+FQI +
Sbjct: 68 RM--RFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQ- 124
Query: 118 ALAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEH--IKVSDFGPSWRDGHAFLSVI 175
G+ + +AK+ LL W + + ++ +F SWRDG F ++I
Sbjct: 125 -------------VSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAII 171
Query: 176 DNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
+ L+D+ + +QTN LD AF+VAE +LG+ RLLDPE
Sbjct: 172 HRHKPMLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPE 213
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis
bullosa, actin-binding, alternative splicing, coiled
coil, cytoplasm; 2.75A {Homo sapiens}
Length = 296
Score = 214 bits (545), Expect = 2e-69
Identities = 95/219 (43%), Positives = 132/219 (60%), Gaps = 20/219 (9%)
Query: 1 EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNL 60
E++RVQKKTF W+N +L K I DL EDL+DG L++LLEVLS + LP EKGR
Sbjct: 69 ERDRVQKKTFTKWVNKHLIKAQRH--ISDLYEDLRDGHNLISLLEVLSGDSLPREKGRM- 125
Query: 61 RRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRALA 120
R H L N AL +L+ +++KLVNI + D+ DG P + LGLIWTIIL+FQI +
Sbjct: 126 -RFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQV--- 181
Query: 121 ALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEH--IKVSDFGPSWRDGHAFLSVIDNI 178
G+ + +AK+ LL W + + ++ +F SWRDG F ++I
Sbjct: 182 -----------SGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRH 230
Query: 179 QKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
+ L+D+ + +QTN LD AF+VAE +LG+ RLLDPE
Sbjct: 231 KPLLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPE 269
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin
homology domain, actin-binding, utrophin; 2.6A {Homo
sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Length = 246
Score = 211 bits (538), Expect = 4e-69
Identities = 89/220 (40%), Positives = 125/220 (56%), Gaps = 18/220 (8%)
Query: 1 EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNL 60
E+E VQKKTF W+N+ SK I++L DL+DG +LL LLE L+ +KLP EKG
Sbjct: 12 EREDVQKKTFTKWVNAQFSKFGKQ-HIENLFSDLQDGRRLLDLLEGLTGQKLPKEKGST- 69
Query: 61 RRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRALA 120
R H L+N N AL+ LQ+ + LVNI S+D+VDG + LGLIW IIL++Q++
Sbjct: 70 -RVHALNNVNKALRVLQNNNVDLVNIGSTDIVDGNHKLTLGLIWNIILHWQVKN------ 122
Query: 121 ALSAEGYTSPEPGKKDVESAKKTLLRWVSNALP--EHIKVSDFGPSWRDGHAFLSVIDNI 178
+++K LL WV + + V +F SW DG A ++I +
Sbjct: 123 ------VMKNIMAGLQQTNSEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSH 176
Query: 179 QKDLVDI-PALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
+ DL D +S+Q+ RL+ AFN+A LGI +LLDPE
Sbjct: 177 RPDLFDWNSVVSQQSATQRLEHAFNIARYQLGIEKLLDPE 216
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain,
contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A
2r0o_A 2eyi_A 2eyn_A 3lue_K
Length = 254
Score = 209 bits (533), Expect = 3e-68
Identities = 83/220 (37%), Positives = 122/220 (55%), Gaps = 25/220 (11%)
Query: 1 EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLP-VEKGRN 59
E+ Q+KTF W NS+L K I+++ ED ++G KL+ LLEV+S E+LP +KG+
Sbjct: 23 AWEKQQRKTFTAWCNSHLRKAGTQ--IENIEEDFRNGLKLMLLLEVISGERLPRPDKGKM 80
Query: 60 LRRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRAL 119
R H ++N N AL F+ SK +KLV+I + ++VDG + LG+IWTIIL F I++ +
Sbjct: 81 --RFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDIS--- 135
Query: 120 AALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEH--IKVSDFGPSWRDGHAFLSVIDN 177
+ SAK+ LL W + + V +F SW+DG A ++I
Sbjct: 136 ---------------VEETSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHR 180
Query: 178 IQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
+ DL+D L K L+TAF VAE L I ++LD E
Sbjct: 181 HRPDLIDYAKLRKDDPIGNLNTAFEVAEKYLDIPKMLDAE 220
>3hoc_A Filamin-A; calponin homology domain, actin binding domain,
acetylation, actin-binding, alternative splicing,
cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB:
3hop_A 3hor_A 2wfn_A
Length = 272
Score = 200 bits (509), Expect = 2e-64
Identities = 68/219 (31%), Positives = 111/219 (50%), Gaps = 15/219 (6%)
Query: 1 EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNL 60
+++Q+ TF W N +L I +L DL DG +L+ALLEVLS +K+ + +
Sbjct: 43 PWKKIQQNTFTRWCNEHLKCVSKR--IANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRP 100
Query: 61 R-RPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRAL 119
R L N + AL+FL + IKLV+I+S +VDG ++LGLIWT+IL++ I
Sbjct: 101 TFRQMQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLIWTLILHYSISMPM--- 157
Query: 120 AALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEHIKVSDFGPSWRDGHAFLSVIDNIQ 179
+ E + ++ K+ LL W+ N LP + +++F W+ G A +++D+
Sbjct: 158 -------WDEEEDEEAKKQTPKQRLLGWIQNKLP-QLPITNFSRDWQSGRALGALVDSCA 209
Query: 180 KDLV-DIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
L D + A A+ LGI +++ PE
Sbjct: 210 PGLCPDWDSWDASKPVTNAREAMQQADDWLGIPQVITPE 248
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation;
2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Length = 275
Score = 199 bits (507), Expect = 4e-64
Identities = 51/238 (21%), Positives = 94/238 (39%), Gaps = 22/238 (9%)
Query: 1 EQERVQKKTFVNWINSYLSKRHP-------PLRIDDLTEDLKDGTKLLALLEVLSNEKLP 53
+K FVNWIN L DDL + + DG L ++ + + +
Sbjct: 20 SYSEEEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTID 79
Query: 54 VEKG--RNLRRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQ 111
+ L N N AL + +VNI + DL G+P +VLGL+W II
Sbjct: 80 ERAINKKKLTPFIIQENLNLALNSASAIGCHVVNIGAEDLRAGKPHLVLGLLWQIIKIGL 139
Query: 112 IEENTRALAALSAEGYTSPEPGKKDVE-SAKKTLLRWVSNALPEH--IKVSDFGPSWRDG 168
+ + A E ++ ++ S ++ LLRW + L K+++F +D
Sbjct: 140 FADIELSRNEALAALLRDGETLEELMKLSPEELLLRWANFHLENSGWQKINNFSADIKDS 199
Query: 169 HAFLSVIDNIQKDL---------VDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
A+ +++ I +++ ++ + R ++ A+ LG + + P
Sbjct: 200 KAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQAD-KLGCRQFVTPA 256
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural
protein, actin-crosslinking, myogenesis, cytoskeleton;
1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Length = 245
Score = 196 bits (499), Expect = 2e-63
Identities = 65/219 (29%), Positives = 113/219 (51%), Gaps = 15/219 (6%)
Query: 1 EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNL 60
+++Q+ TF W N +L + I +L DL DG +L+ALLEVLS +++ + +
Sbjct: 16 PWKKIQQNTFTRWCNEHLKCVNKR--IGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRP 73
Query: 61 R-RPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRAL 119
R L N + AL+FL + IKLV+I+S +VDG ++LGL+WT+IL++ I
Sbjct: 74 TFRQMQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSISMPV--- 130
Query: 120 AALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEHIKVSDFGPSWRDGHAFLSVIDNIQ 179
+ ++ K+ LL W+ N +P + +++F +W+DG A +++D+
Sbjct: 131 -------WEDEGDDDAKKQTPKQRLLGWIQNKIPY-LPITNFNQNWQDGKALGALVDSCA 182
Query: 180 KDLV-DIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
L D + Q A A+ LG+ +++ PE
Sbjct: 183 PGLCPDWESWDPQKPVDNAREAVQQADDWLGVPQVITPE 221
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain
(ABD), F-actin- crosslinking, structural genomics; 2.40A
{Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Length = 506
Score = 203 bits (516), Expect = 7e-63
Identities = 52/229 (22%), Positives = 89/229 (38%), Gaps = 15/229 (6%)
Query: 3 ERVQKKTFVNWINSYLSKRHP-------PLRIDDLTEDLKDGTKLLALLEVLSNEKLP-- 53
+ +K FV IN YL + L E +KDG L L+ V +
Sbjct: 5 IQSEKGPFVQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDER 64
Query: 54 -VEKGRNLRRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQI 112
+ R L N L ++ +VNI + DL +GRP +VLGLI +I +
Sbjct: 65 AINTKRVLNPWERNENHTLCLNSAKAVGCSVVNIGTQDLAEGRPHLVLGLISQLIKIQLL 124
Query: 113 EENTRALAALSAEGYTSPEPGKKDVE-SAKKTLLRWVSNALPE---HIKVSDFGPSWRDG 168
+ E + ++ + +K LL+W++ L + VS+F +D
Sbjct: 125 ADLNLKKTPQLVELLEDSDDVEELLRLPPEKVLLKWMNFHLKKGGYKKTVSNFSADLKDA 184
Query: 169 HAFLSVIDNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
A+ +++ + + D L + R + + AE + R L E
Sbjct: 185 QAYAFLLNVLAPEHCDPATLDAKDPLERAELVLSHAE-RMNCKRYLTAE 232
Score = 150 bits (380), Expect = 6e-43
Identities = 41/226 (18%), Positives = 93/226 (41%), Gaps = 26/226 (11%)
Query: 2 QERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLR 61
+ ++ + WINS + ++++ ED+++G LL +L+ +S + +
Sbjct: 273 ETCRDERCYRLWINSLGIDSY----VNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPP 328
Query: 62 ---RPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRA 118
+ N N ++ + + LVN+ +D+V G ++LGL+W ++ + ++
Sbjct: 329 IKMPFRKVENCNQVIKIGKQLKFSLVNVAGNDIVQGNKKLILGLLWQLMRFHMLQLLKS- 387
Query: 119 LAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEH---IKVSDF-GPSWRDGHAFLSV 174
E +L W + + +++ F S G FL++
Sbjct: 388 -----------LRSRTLGKEMTDADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNL 436
Query: 175 IDNIQKDLVDIPALSKQTNR--HRLDTAFNVA-ESNLGIARLLDPE 217
+ ++ +V+ ++K RL+ + V+ LG + L PE
Sbjct: 437 LWAVEPRVVNWNLVTKGETDDEKRLNATYIVSVARKLGCSVFLLPE 482
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 189 bits (481), Expect = 8e-56
Identities = 81/219 (36%), Positives = 121/219 (55%), Gaps = 23/219 (10%)
Query: 1 EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNL 60
E+ Q+KTF W NS+L K I+++ ED +DG KL+ LLEV+S E+L + R
Sbjct: 4 AWEKQQRKTFTAWCNSHLRKAGTQ--IENIEEDFRDGLKLMLLLEVISGERLAKPE-RGK 60
Query: 61 RRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRALA 120
R H +SN N AL F+ SK +KLV+I + ++VDG + LG+IWTIIL F I++ +
Sbjct: 61 MRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISV--- 117
Query: 121 ALSAEGYTSPEPGKKDVESAKKTLLRWVSNALP--EHIKVSDFGPSWRDGHAFLSVIDNI 178
+ SAK+ LL W +++ + +F SW+DG F ++I
Sbjct: 118 ---------------EETSAKEGLLLWYQRKTAPYKNVNIQNFHISWKDGLGFCALIHRH 162
Query: 179 QKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
+ +L+D L K L+TAF+VAE L I ++LD E
Sbjct: 163 RPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAE 201
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology,
actin-crosslinking, structural protein; 2.00A
{Schizosaccharomyces pombe} SCOP: a.40.1.1
Length = 513
Score = 183 bits (465), Expect = 2e-55
Identities = 46/231 (19%), Positives = 84/231 (36%), Gaps = 19/231 (8%)
Query: 5 VQKKTFVNWINSYLSKRHP-------PLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEK- 56
+++ F+ INS L+ + + KDG L L+ + +
Sbjct: 12 EERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERVL 71
Query: 57 -----GRNLRRPHFLSNANTALQFLQSKR-IKLVNINSSDLVDGRPAVVLGLIWTIILYF 110
+ L + N N + ++ I + NI + D+++GR ++LGL+W II
Sbjct: 72 NKQRNNKPLDNFKCIENNNVVINSAKAMGGISITNIGAGDILEGREHLILGLVWQIIRRG 131
Query: 111 QIEENTRALAALSAEGYTSPEPGKKDVE-SAKKTLLRWVSNALPEH---IKVSDFGPSWR 166
+ + L E + + +K LLRW + L VS+F
Sbjct: 132 LLGKIDITLHPELYRLLEEDETLDQFLRLPPEKILLRWFNYHLKAANWPRTVSNFSKDVS 191
Query: 167 DGHAFLSVIDNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
DG + +++ + +L L R + AE L + L P
Sbjct: 192 DGENYTVLLNQLAPELCSRAPLQTTDVLQRAEQVLQNAE-KLDCRKYLTPT 241
Score = 152 bits (386), Expect = 7e-44
Identities = 44/232 (18%), Positives = 83/232 (35%), Gaps = 34/232 (14%)
Query: 1 EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEK---- 56
+ + + F W+NS I D +L+DG LL + ++ + +K
Sbjct: 281 AEGEREARVFTLWLNSLDVTPS----IHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKA 336
Query: 57 ---GRNLRRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIE 113
G + R + N N A+ +++ LV I +D+ DG + L L+W ++
Sbjct: 337 PASGDEMMRFKAVENCNYAVDLGKNQGFSLVGIQGADITDGSRTLTLALVWQMMRMNIT- 395
Query: 114 ENTRALAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEHIK----VSDFGPSWRDGH 169
T + + ++ W ++ + K S PS G
Sbjct: 396 -------------KTLHSLSRGGKTLSDSDMVAWANSMAAKGGKGSQIRSFRDPSISTGV 442
Query: 170 AFLSVIDNIQKDLVD----IPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
L V+ I+ + VD +++ A ++A LG + PE
Sbjct: 443 FVLDVLHGIKSEYVDYNLVTDGSTEELAIQNARLAISIARK-LGAVIFILPE 493
Score = 28.2 bits (62), Expect = 2.5
Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 12/93 (12%)
Query: 129 SPEPGKKDVESAKKTLLRWVSNAL----------PEHIKVSDFGPSWRDGHAFLSVIDNI 178
SPE E ++ ++ +++ L P + + +F +DG +I++
Sbjct: 2 SPEFMHTINEEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDS 61
Query: 179 QKDLVDIPALSKQTNRHRLDTAFNVAESNLGIA 211
D +D L+KQ N L F E N +
Sbjct: 62 VPDTIDERVLNKQRNNKPL-DNFKCIE-NNNVV 92
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase,
all alpha, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 129
Score = 159 bits (405), Expect = 2e-50
Identities = 32/114 (28%), Positives = 60/114 (52%)
Query: 1 EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNL 60
QK+ + +W N YL+K I DL +D+ DG L +++V++NEK+ G
Sbjct: 14 HGLEDQKRIYTDWANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIEDINGCPK 73
Query: 61 RRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEE 114
R + N + L FL +K I + +++ ++ +G +LGL +++ Y Q ++
Sbjct: 74 NRSQMIENIDACLNFLAAKGINIQGLSAEEIRNGNLKAILGLFFSLSRYKQQQQ 127
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction,
alternative splicing, calponin homology domain,
actin-binding, cell membrane; 1.05A {Homo sapiens} PDB:
2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Length = 131
Score = 134 bits (340), Expect = 1e-40
Identities = 22/116 (18%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 1 EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKG--R 58
++ V KKT + ++N +L+K + L + +L DG L+ L+ +L +P+
Sbjct: 18 DKLNVVKKTLITFVNKHLNKLN--LEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLT 75
Query: 59 NLRRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEE 114
+ N + A + +Q ++ D+V+ L +++ + ++ E
Sbjct: 76 PDSFEQKVLNVSFAFELMQDGGLEKPKPRPEDIVNCDLKSTLRVLYNLFTKYRNVE 131
Score = 28.7 bits (64), Expect = 0.82
Identities = 10/52 (19%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 141 KKTLLRWVSNALPEH-IKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQ 191
KKTL+ +V+ L + ++V++ + DG + ++ ++ V + +
Sbjct: 24 KKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLT 75
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains;
CH domain, mical, structural genomics; NMR {Homo
sapiens} PDB: 2dk9_A
Length = 116
Score = 103 bits (260), Expect = 6e-29
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 133 GKKDVESAKKTLLRWVSNALP--EHIKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSK 190
G ++ LLRW + VSD SW DG A +++ +Q L++ L
Sbjct: 1 GSSGSSGTQEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLEPSELQG 60
Query: 191 QTNRHRLDTAFNVAESNLGIARLLDPE 217
A VAE+ LGI ++ +
Sbjct: 61 LGALEATAWALKVAENELGITPVVSAQ 87
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain,
actin binding, structural genomics, NPPSFA; NMR {Homo
sapiens} PDB: 2jv9_A 2k3s_A
Length = 128
Score = 103 bits (260), Expect = 1e-28
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 133 GKKDVESAKKTLLRWVSNALP--EHIKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSK 190
G K+ LL W EH+ + +F SW DG AF +++ N + D LS
Sbjct: 1 GSSGSSGIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSP 60
Query: 191 QTNRHRLDTAFNVAESNLGIARLLDPE 217
Q R + AF+ AE++ +LLD E
Sbjct: 61 QNRRQNFEVAFSSAETHADCPQLLDTE 87
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Length = 121
Score = 103 bits (258), Expect = 2e-28
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 133 GKKDVESAKKTLLRWVSNALP--EHIKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSK 190
+ LL W + V+D SW+ G A ++I + DL+D +L +
Sbjct: 3 SGSSGVARSSKLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLIDFDSLDE 62
Query: 191 QTNRHRLDTAFNVAESNLGIARLLDPE 217
Q AF++AE LGI+ ++ +
Sbjct: 63 QNVEKNNQLAFDIAEKELGISPIMTGK 89
>1bhd_A Utrophin; calponin homology, actin binding, structural protein;
2.00A {Homo sapiens} SCOP: a.40.1.1
Length = 118
Score = 102 bits (257), Expect = 2e-28
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 139 SAKKTLLRWVSNALP--EHIKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHR 196
+++K LL WV + V +F SW DG AF +V+ + DL + K + R
Sbjct: 8 NSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVVKMSPIER 67
Query: 197 LDTAFNVAESNLGIARLLDPE 217
L+ AF+ A++ LGI +LLDPE
Sbjct: 68 LEHAFSKAQTYLGIEKLLDPE 88
>1bkr_A Spectrin beta chain; filamentous actin-binding domain,
cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB:
1aa2_A
Length = 109
Score = 102 bits (257), Expect = 2e-28
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 139 SAKKTLLRWVSNALP--EHIKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHR 196
SAK LL W ++ + +F SWRDG AF ++I + DL+D L K +
Sbjct: 3 SAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYN 62
Query: 197 LDTAFNVAESNLGIARLLDPE 217
L AFN+AE +LG+ +LLDPE
Sbjct: 63 LQNAFNLAEQHLGLTKLLDPE 83
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
structural protein; NMR {Homo sapiens}
Length = 127
Score = 102 bits (256), Expect = 4e-28
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 133 GKKDVESAKKTLLRWVSNALP--EHIKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSK 190
G AK LL W ++ V +F SWRDG AF +++ + DL+D +L K
Sbjct: 1 GSSGSSGAKDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLLDFESLKK 60
Query: 191 QTNRHRLDTAFNVAESNLGIARLLDPE 217
+ L AFN+AE LG+ +LLDPE
Sbjct: 61 CNAHYNLQNAFNLAEKELGLTKLLDPE 87
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 98.5 bits (246), Expect = 8e-27
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 139 SAKKTLLRWVSNALP--EHIKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHR 196
+A ++LL W +K+++F SWR+G +F +++ + + DL+D +L+ Q +
Sbjct: 9 NASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQDIKEN 68
Query: 197 LDTAFNVAESNLGIARLLDPE 217
A+ +++GI+RLL+P
Sbjct: 69 NKKAY-DGFASIGISRLLEPS 88
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 3e-04
Identities = 28/210 (13%), Positives = 62/210 (29%), Gaps = 66/210 (31%)
Query: 1 EQERVQKKTFV--------NWINSYLSKRH-PPLRIDDLTEDLKDGTKLLALLEVLSNEK 51
+QE + +K FV ++ S + P + + + +D L N+
Sbjct: 74 KQEEMVQK-FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD---------RLYNDN 123
Query: 52 LPVEKGRNLRRPHFLSNANTALQFLQSKRI----------K--LVN--INSSDLVDGRPA 97
K N+ R AL L+ + K + S +
Sbjct: 124 QVFAK-YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD- 181
Query: 98 VVLGLIW----------TII-----LYFQIEENTRALAALSAEGYTSPEPGKKDVESAKK 142
+ W T++ L +QI+ N + ++ ++ + +++ +
Sbjct: 182 --FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR----SDHSSNIKLRIHSIQAELR 235
Query: 143 TLLRWVS--NAL--------PEHIKVSDFG 162
LL+ N L + +
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Score = 40.2 bits (93), Expect = 4e-04
Identities = 38/211 (18%), Positives = 64/211 (30%), Gaps = 57/211 (27%)
Query: 21 RHPPL--RIDDLTEDLKDGTKLLALLEVLSNEKLPVE-KGRNLRRPHFLS--------NA 69
H L LT D + LL + LP E N P LS
Sbjct: 287 THISLDHHSMTLTPD--EVKSLLLKYLDCRPQDLPREVLTTN---PRRLSIIAESIRDGL 341
Query: 70 NTALQFLQSKRIKLVNINSSDL-----VDGR---------------PAVVLGLIWTIILY 109
T + KL I S L + R P ++L LIW ++
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 110 FQIEE-----NTRALAALSAEGYTSPEPG-------KKDVESAK-KTLLRWVSNALPEHI 156
+ + +L + T P K + E A ++++ +P+
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD--HYNIPKTF 459
Query: 157 KVSDFGPSWRDGHAF------LSVIDNIQKD 181
D P + D + + L I++ ++
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.002
Identities = 36/227 (15%), Positives = 71/227 (31%), Gaps = 69/227 (30%)
Query: 13 WINSYLSKRHPPLRID-DLTEDLKDGTKLLALLEVLSNEKLP-----VEKGRNLRRPH-- 64
+I + +P + + ED + NE +P + NL +
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLEN-----------NEGVPSPMLSI---SNLTQEQVQ 350
Query: 65 -FLSNANTALQFLQSKRIKLVNINSSD--LVDGRPAVVLGLIWTIILYFQIEENTRALAA 121
+++ N+ L K++++ +N + +V G P + GL T+ R A
Sbjct: 351 DYVNKTNSHLP--AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL----------RKAKA 398
Query: 122 LSAEG-----------------------YTSP--EPGKKDV-ESAKKTLLRWVSNALPEH 155
S + S P + + K + + + +
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI--Q 456
Query: 156 IKVSDF--GPSWRDGHAFL--SVIDNIQKDLVDIPALSKQTNRHRLD 198
I V D G R + ++D I + V ++ H LD
Sbjct: 457 IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD 503
Score = 31.6 bits (71), Expect = 0.23
Identities = 41/206 (19%), Positives = 60/206 (29%), Gaps = 69/206 (33%)
Query: 2 QERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTK----------LLALLEVLSNEK 51
QE+VQ +VN NS+L + I L +G K L L L K
Sbjct: 346 QEQVQD--YVNKTNSHLP-AGKQVEIS-----LVNGAKNLVVSGPPQSLYGLNLTLRKAK 397
Query: 52 LPVEKGRNLRRPHFLSNANTALQFLQSKRIKLVNIN----------SSDLVDGRPAVVLG 101
P ++ R P S+R KL N S LV +
Sbjct: 398 APSGLDQS-RIPF-------------SER-KLKFSNRFLPVASPFHSHLLVPASDLINKD 442
Query: 102 LIWTIILYFQIEENTRALAALSAEGYTSPEPGKKDVESAKKTLLR------------W-- 147
L+ + + + Y G D+ ++ W
Sbjct: 443 LVKNNVSFNA--------KDIQIPVY-DTFDGS-DLRVLSGSISERIVDCIIRLPVKWET 492
Query: 148 VSNALPEHIKVSDFGPSWRDGHAFLS 173
+ HI + DFGP G L+
Sbjct: 493 TTQFKATHI-L-DFGPGGASGLGVLT 516
Score = 28.1 bits (62), Expect = 3.4
Identities = 6/44 (13%), Positives = 19/44 (43%), Gaps = 12/44 (27%)
Query: 46 VLSNEKLPVEKGRNLRRPHFLSNANTALQFLQSKRIKLVNINSS 89
V + + ++ ++N L F++ ++I ++ + S
Sbjct: 1854 VAAGDLRALDT---------VTNV---LNFIKLQKIDIIELQKS 1885
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin
binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Length = 108
Score = 31.6 bits (72), Expect = 0.054
Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 11 VNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRP-HFLSNA 69
WI +R + + LKDG L L+ L V+K + + H L N
Sbjct: 9 RVWIEGATGRRIGD----NFMDGLKDGVILCELINKLQPG--SVQKVNDPVQNWHKLENI 62
Query: 70 NTALQFLQSKRIKLVNI-NSSDLVDGR--PAVVLGLIW 104
L+ ++ +K +I ++DL + V LI
Sbjct: 63 GNFLRAIKHYGVKPHDIFEANDLFENTNHTQVQSTLIA 100
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Length = 124
Score = 30.4 bits (68), Expect = 0.21
Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 4/104 (3%)
Query: 11 VNWINSYLSKRHPPLRIDDLTED-LKDGTKLLALLEVLSNEKLPVE--KGRNLRRPHFLS 67
VNW+N LS+ I + + ++ L++ + + + K NL +
Sbjct: 13 VNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTEDDKHN 72
Query: 68 NANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQ 111
NA A+ + + V DLV+ +P +V+ + ++
Sbjct: 73 NAKYAVSMARRIGAR-VYALPEDLVEVKPKMVMTVFACLMGRGM 115
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.4 bits (68), Expect = 0.30
Identities = 5/20 (25%), Positives = 7/20 (35%), Gaps = 5/20 (25%)
Query: 152 LPEHIKVSDFGPSWRDGHAF 171
L + + D WR F
Sbjct: 52 LSDKL--VDTRSEWR---TF 66
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha,
NPPSFA, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Length = 121
Score = 26.8 bits (59), Expect = 3.3
Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 8/100 (8%)
Query: 11 VNWINSYLSKRHPPLRI----DDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFL 66
V W+ S P I + L LK+G L L+ L + +
Sbjct: 12 VTWLISLGVLESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVEKFCLDPQTEADCI 71
Query: 67 SNANTALQFLQSKRIKLVNINSSDLVDGR--PAVVLGLIW 104
+N N L+ + ++++ + DL G V+ L+
Sbjct: 72 NNINDFLKGCATLQVEIF--DPDDLYSGVNFSKVLSTLLA 109
>2np2_A HBB; protein-DNA complex, DNA-binding protein, DNA-bending protein,
dnabii family, HU/IHF family, DNA binding protein/DNA
complex; 3.02A {Borrelia burgdorferi}
Length = 108
Score = 26.1 bits (58), Expect = 5.2
Identities = 7/48 (14%), Positives = 13/48 (27%), Gaps = 4/48 (8%)
Query: 119 LAALSAEGYTSPEPG--KKDVESAKKTLLRWVSNALP--EHIKVSDFG 162
+ A + KK + + + L I+ FG
Sbjct: 14 IVDQIALNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFG 61
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 26.5 bits (59), Expect = 8.7
Identities = 3/51 (5%), Positives = 19/51 (37%)
Query: 99 VLGLIWTIILYFQIEENTRALAALSAEGYTSPEPGKKDVESAKKTLLRWVS 149
++ + + + + ++ E Y + P + ++ ++ + +
Sbjct: 194 FCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIF 244
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter
pomeroyi DSS, structural genomics, PSI-2, protein
structure initiative; HET: MES; 1.90A {Silicibacter
pomeroyi}
Length = 194
Score = 26.1 bits (58), Expect = 9.3
Identities = 4/43 (9%), Positives = 10/43 (23%)
Query: 118 ALAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEHIKVSD 160
+ +L E + W+ E ++
Sbjct: 105 PVGSLCTELSKLDHAAQGQANGLFTLFRDWLQRQFAEAGCTTE 147
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.391
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,488,077
Number of extensions: 202364
Number of successful extensions: 639
Number of sequences better than 10.0: 1
Number of HSP's gapped: 559
Number of HSP's successfully gapped: 42
Length of query: 228
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 138
Effective length of database: 4,188,903
Effective search space: 578068614
Effective search space used: 578068614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.2 bits)