RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7817
(228 letters)
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 500
Score = 206 bits (525), Expect = 1e-64
Identities = 52/226 (23%), Positives = 88/226 (38%), Gaps = 15/226 (6%)
Query: 6 QKKTFVNWINSYLSKRHP-------PLRIDDLTEDLKDGTKLLALLEVLSNEKLP---VE 55
+K FV IN YL + L E +KDG L L+ V + +
Sbjct: 2 EKGPFVQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAIN 61
Query: 56 KGRNLRRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEEN 115
R L N L ++ +VNI + DL +GRP +VLGLI +I + +
Sbjct: 62 TKRVLNPWERNENHTLCLNSAKAVGCSVVNIGTQDLAEGRPHLVLGLISQLIKIQLLADL 121
Query: 116 TRALAALSAEGYTSPEPGKKDVE-SAKKTLLRWVSNALPE---HIKVSDFGPSWRDGHAF 171
E + ++ + +K LL+W++ L + VS+F +D A+
Sbjct: 122 NLKKTPQLVELLEDSDDVEELLRLPPEKVLLKWMNFHLKKGGYKKTVSNFSADLKDAQAY 181
Query: 172 LSVIDNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
+++ + + D L + R + + AE + R L E
Sbjct: 182 AFLLNVLAPEHCDPATLDAKDPLERAELVLSHAE-RMNCKRYLTAE 226
Score = 153 bits (387), Expect = 2e-44
Identities = 42/227 (18%), Positives = 94/227 (41%), Gaps = 26/227 (11%)
Query: 1 EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNL 60
+ ++ + WINS + ++++ ED+++G LL +L+ +S + +
Sbjct: 266 VETCRDERCYRLWINSLGIDSY----VNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKP 321
Query: 61 R---RPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTR 117
+ N N ++ + + LVN+ +D+V G ++LGL+W ++ + ++
Sbjct: 322 PIKMPFRKVENCNQVIKIGKQLKFSLVNVAGNDIVQGNKKLILGLLWQLMRFHMLQLL-- 379
Query: 118 ALAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEH---IKVSDF-GPSWRDGHAFLS 173
S E +L W + + +++ F S G FL+
Sbjct: 380 ----------KSLRSRTLGKEMTDADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLN 429
Query: 174 VIDNIQKDLVDIPALSKQTN--RHRLDTAFNVA-ESNLGIARLLDPE 217
++ ++ +V+ ++K RL+ + V+ LG + L PE
Sbjct: 430 LLWAVEPRVVNWNLVTKGETDDEKRLNATYIVSVARKLGCSVFLLPE 476
Score = 30.0 bits (67), Expect = 0.24
Identities = 10/75 (13%), Positives = 24/75 (32%), Gaps = 10/75 (13%)
Query: 139 SAKKTLLRWVSNAL----------PEHIKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPAL 188
S K ++ ++ L P + +DG +I+ +D A+
Sbjct: 1 SEKGPFVQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAI 60
Query: 189 SKQTNRHRLDTAFNV 203
+ + + + N
Sbjct: 61 NTKRVLNPWERNENH 75
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 505
Score = 182 bits (464), Expect = 1e-55
Identities = 46/230 (20%), Positives = 83/230 (36%), Gaps = 19/230 (8%)
Query: 6 QKKTFVNWINSYLSKRHP-------PLRIDDLTEDLKDGTKLLALLEVLSNEKLPV---- 54
+++ F+ INS L+ + + KDG L L+ + +
Sbjct: 5 ERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERVLN 64
Query: 55 --EKGRNLRRPHFLSNANTALQFLQSKR-IKLVNINSSDLVDGRPAVVLGLIWTIILYFQ 111
+ L + N N + ++ I + NI + D+++GR ++LGL+W II
Sbjct: 65 KQRNNKPLDNFKCIENNNVVINSAKAMGGISITNIGAGDILEGREHLILGLVWQIIRRGL 124
Query: 112 IEENTRAL-AALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEH---IKVSDFGPSWRD 167
+ + L L + +K LLRW + L VS+F D
Sbjct: 125 LGKIDITLHPELYRLLEEDETLDQFLRLPPEKILLRWFNYHLKAANWPRTVSNFSKDVSD 184
Query: 168 GHAFLSVIDNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
G + +++ + +L L R + AE L + L P
Sbjct: 185 GENYTVLLNQLAPELCSRAPLQTTDVLQRAEQVLQNAE-KLDCRKYLTPT 233
Score = 150 bits (379), Expect = 2e-43
Identities = 42/231 (18%), Positives = 84/231 (36%), Gaps = 34/231 (14%)
Query: 2 QERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEK----- 56
+ + + F W+NS I D +L+DG LL + ++ + +K
Sbjct: 274 EGEREARVFTLWLNSLDVTPS----IHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAP 329
Query: 57 --GRNLRRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEE 114
G + R + N N A+ +++ LV I +D+ DG + L L+W ++ +
Sbjct: 330 ASGDEMMRFKAVENCNYAVDLGKNQGFSLVGIQGADITDGSRTLTLALVWQMMRMNITKT 389
Query: 115 NTRALAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEH---IKVSDF-GPSWRDGHA 170
+ + ++ W ++ + ++ F PS G
Sbjct: 390 LH--------------SLSRGGKTLSDSDMVAWANSMAAKGGKGSQIRSFRDPSISTGVF 435
Query: 171 FLSVIDNIQKDLVDIPALSKQTNR----HRLDTAFNVAESNLGIARLLDPE 217
L V+ I+ + VD ++ + A ++A LG + PE
Sbjct: 436 VLDVLHGIKSEYVDYNLVTDGSTEELAIQNARLAISIARK-LGAVIFILPE 485
Score = 26.9 bits (59), Expect = 2.4
Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
Query: 138 ESAKKTLLRWVSNAL----------PEHIKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPA 187
E ++ ++ +++ L P + + +F +DG +I++ D +D
Sbjct: 3 EEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERV 62
Query: 188 LSKQTNRHRL 197
L+KQ N L
Sbjct: 63 LNKQRNNKPL 72
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 120
Score = 128 bits (324), Expect = 5e-39
Identities = 61/117 (52%), Positives = 79/117 (67%), Gaps = 5/117 (4%)
Query: 1 EQERVQKKTFVNWINSYLSKRH---PPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKG 57
E++RVQKKTF W+N +L K I DL EDL+DG L++LLEVLS + LP EKG
Sbjct: 1 ERDRVQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPREKG 60
Query: 58 RNLRRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEE 114
R R H L N AL +L+ +++KLVNI + D+ DG P + LGLIWTIIL+FQI +
Sbjct: 61 RM--RFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISD 115
Score = 27.3 bits (60), Expect = 0.83
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 141 KKTLLRWVSNALPEH------IKVSDFGPSWRDGHAFLSVIDNIQKD-LVDIPALSKQTN 193
KKT +WV+ L +H +SD RDGH +S+++ + D L +
Sbjct: 7 KKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPREKGRMRFHK 66
Query: 194 RHRLDTAFNVAESN 207
+ A +
Sbjct: 67 LQNVQIALDYLRHR 80
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 119 bits (299), Expect = 3e-35
Identities = 57/111 (51%), Positives = 75/111 (67%), Gaps = 3/111 (2%)
Query: 1 EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNL 60
E+E VQKKTF W+N+ SK I++L DL+DG +LL LLE L+ +KLP EKG
Sbjct: 4 EREDVQKKTFTKWVNAQFSKFGKQ-HIENLFSDLQDGRRLLDLLEGLTGQKLPKEKGST- 61
Query: 61 RRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQ 111
R H L+N N AL+ LQ+ + LVNI S+D+VDG + LGLIW IIL++Q
Sbjct: 62 -RVHALNNVNKALRVLQNNNVDLVNIGSTDIVDGNHKLTLGLIWNIILHWQ 111
>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 131
Score = 105 bits (262), Expect = 1e-29
Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 9/118 (7%)
Query: 6 QKKTFVNWINSYLSK-------RHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEK-- 56
+K FVNWIN L DDL + + DG L ++ + + +
Sbjct: 5 EKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAIN 64
Query: 57 GRNLRRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEE 114
+ L N N AL + +VNI + DL G+P +VLGL+W II +
Sbjct: 65 KKKLTPFIIQENLNLALNSASAIGCHVVNIGAEDLRAGKPHLVLGLLWQIIKIGLFAD 122
Score = 30.0 bits (67), Expect = 0.10
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 15/85 (17%)
Query: 138 ESAKKTLLRWV----------SNALPEHIKVSDFGPSWRDGHAFLSVIDNIQKDLVDI-- 185
E K + W+ + +P + D + DG +I+ D +D
Sbjct: 3 EEEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERA 62
Query: 186 ---PALSKQTNRHRLDTAFNVAESN 207
L+ + L+ A N A +
Sbjct: 63 INKKKLTPFIIQENLNLALNSASAI 87
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 83.3 bits (206), Expect = 2e-21
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 139 SAKKTLLRWVSNALPEH--IKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHR 196
+++K LL WV + + V +F SW DG AF +V+ + DL + K + R
Sbjct: 5 NSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVVKMSPIER 64
Query: 197 LDTAFNVAESNLGIARLLDPE 217
L+ AF+ A++ LGI +LLDPE
Sbjct: 65 LEHAFSKAQTYLGIEKLLDPE 85
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 82.0 bits (202), Expect = 1e-20
Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 4/112 (3%)
Query: 3 ERVQKKTFVNWINSYLSKRHPPLRIDDLTE-DLKDGTKLLALLEVLSNEKLPVEK--GRN 59
VNW+N LS+ I + + ++ L++ + + + N
Sbjct: 5 SSGNDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGN 64
Query: 60 LRRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQ 111
L +NA A+ + V DLV+ +P +V+ + ++
Sbjct: 65 LTEDDKHNNAKYAVSMARRIGA-RVYALPEDLVEVKPKMVMTVFACLMGRGM 115
Score = 49.6 bits (118), Expect = 1e-08
Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 10/94 (10%)
Query: 133 GKKDVESAKKTLLRWVSNALPEH---IKVSDFG-PSWRDGHAFLSVIDNIQKDLVDIPAL 188
G ++ WV+ L E + F + A + +ID IQ ++ +
Sbjct: 1 GSSGSSGNDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLV 60
Query: 189 SK-----QTNRHRLDTAFNVAESNLGIARLLDPE 217
+ A ++A +G PE
Sbjct: 61 KSGNLTEDDKHNNAKYAVSMAR-RIGARVYALPE 93
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 80.0 bits (197), Expect = 5e-20
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 139 SAKKTLLRWVSNALPEH--IKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHR 196
+AK+ LL W + + ++ +F SWRDG F ++I + L+D+ + +QTN
Sbjct: 6 TAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVYRQTNLEN 65
Query: 197 LDTAFNVAESNLGIARLLDPE 217
LD AF+VAE +LG+ RLLDPE
Sbjct: 66 LDQAFSVAERDLGVTRLLDPE 86
Score = 33.0 bits (75), Expect = 0.007
Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 4/96 (4%)
Query: 1 EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNL 60
++ K+ + W + + LR D+ T +DG A++ + + +
Sbjct: 2 SEDMTAKEKLLLWSQRMVEG-YQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMN---KV 57
Query: 61 RRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRP 96
R L N + A + ++ D+ +P
Sbjct: 58 YRQTNLENLDQAFSVAERDLGVTRLLDPEDVDVPQP 93
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 78.1 bits (192), Expect = 2e-19
Identities = 19/105 (18%), Positives = 42/105 (40%), Gaps = 6/105 (5%)
Query: 7 KKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGR---NLRRP 63
++ + W N +L + +I++ + D+KD LL ++ + + R N+
Sbjct: 11 EELLLRWANFHL-ENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGF 69
Query: 64 HFLSNANTALQFLQSKRIKLVN--INSSDLVDGRPAVVLGLIWTI 106
+ + A LQ + +D+V G P + L + +
Sbjct: 70 NETDDLKRAESMLQQADKLGCRQFVTPADVVSGNPKLNLAFVANL 114
Score = 49.6 bits (118), Expect = 1e-08
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 12/90 (13%)
Query: 139 SAKKTLLRWVSNALPE--HIKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSK------ 190
S ++ LLRW + L K+++F +D A+ +++ I
Sbjct: 9 SPEELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSG 68
Query: 191 ---QTNRHRLDTAFNVAESNLGIARLLDPE 217
+ R ++ A+ LG + + P
Sbjct: 69 FNETDDLKRAESMLQQADK-LGCRQFVTPA 97
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 108
Score = 76.5 bits (188), Expect = 9e-19
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 139 SAKKTLLRWVSNALP--EHIKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHR 196
SAK LL W ++ + +F SWRDG AF ++I + DL+D L K +
Sbjct: 2 SAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYN 61
Query: 197 LDTAFNVAESNLGIARLLDPE 217
L AFN+AE +LG+ +LLDPE
Sbjct: 62 LQNAFNLAEQHLGLTKLLDPE 82
Score = 31.5 bits (71), Expect = 0.025
Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 4/93 (4%)
Query: 4 RVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRP 63
+ K + W +P + I + T +DG AL+ + + +K L++
Sbjct: 1 KSAKDALLLWCQMKT-AGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDK---LKKS 56
Query: 64 HFLSNANTALQFLQSKRIKLVNINSSDLVDGRP 96
+ N A + ++ D+ P
Sbjct: 57 NAHYNLQNAFNLAEQHLGLTKLLDPEDISVDHP 89
>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 159
Score = 75.1 bits (184), Expect = 1e-17
Identities = 22/143 (15%), Positives = 45/143 (31%), Gaps = 16/143 (11%)
Query: 12 NWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANT 71
WI L P + L++G L L++ +KL N + N N
Sbjct: 18 KWIEECLGTDLGP--TSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINK 75
Query: 72 ALQFLQSK-RIKLVNINSSDLVDGR-PAVVLGLIWTIILYFQIEENTRALAALSAEGYTS 129
L F+ ++ + +D+ +G+ V+ I + + + +
Sbjct: 76 FLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFLSM------------QDLAP 123
Query: 130 PEPGKKDVESAKKTLLRWVSNAL 152
P + S + + L
Sbjct: 124 PLIKSDENLSFTDEDVSIIVRRL 146
>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 127
Score = 73.0 bits (179), Expect = 2e-17
Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 139 SAKKTLLRWVSNALP--EHIKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPA-LSKQTNRH 195
+++K LL WV + + V +F SW DG A ++I + + DL D + +S+Q+
Sbjct: 16 NSEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDWNSVVSQQSATQ 75
Query: 196 RLDTAFNVAESNLGIARLLDPE 217
RL+ AFN+A LGI +LLDPE
Sbjct: 76 RLEHAFNIARYQLGIEKLLDPE 97
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.391
Gapped
Lambda K H
0.267 0.0554 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 832,285
Number of extensions: 36591
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 24
Length of query: 228
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 146
Effective length of database: 1,281,736
Effective search space: 187133456
Effective search space used: 187133456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.8 bits)