Query psy782
Match_columns 100
No_of_seqs 206 out of 1010
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 19:43:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy782.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/782hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0257|consensus 99.6 1.8E-14 3.8E-19 101.9 8.4 91 7-100 5-96 (420)
2 PLN00175 aminotransferase fami 99.6 3.6E-14 7.9E-19 101.5 9.4 89 8-100 30-118 (413)
3 COG0436 Aspartate/tyrosine/aro 99.5 1.5E-13 3.2E-18 98.1 8.6 65 32-100 28-92 (393)
4 PRK08912 hypothetical protein; 99.4 5.1E-12 1.1E-16 89.4 8.7 86 11-100 5-90 (387)
5 PRK06107 aspartate aminotransf 99.3 8.2E-12 1.8E-16 88.9 8.4 91 5-100 1-96 (402)
6 PRK13355 bifunctional HTH-doma 99.3 5.1E-12 1.1E-16 92.7 7.4 88 7-100 116-211 (517)
7 PRK07366 succinyldiaminopimela 99.3 1E-11 2.2E-16 87.9 8.5 88 10-100 3-95 (388)
8 PRK08960 hypothetical protein; 99.3 1.5E-11 3.2E-16 87.1 7.9 87 9-100 4-95 (387)
9 PLN02368 alanine transaminase 99.3 4.4E-12 9.5E-17 90.9 5.1 90 9-100 10-133 (407)
10 PRK07337 aminotransferase; Val 99.3 2.1E-11 4.4E-16 86.4 7.8 87 9-100 2-93 (388)
11 PRK06108 aspartate aminotransf 99.3 4.5E-11 9.8E-16 84.1 8.9 84 12-100 3-87 (382)
12 PRK06348 aspartate aminotransf 99.3 3.4E-11 7.5E-16 85.2 8.2 89 7-100 3-92 (384)
13 PTZ00377 alanine aminotransfer 99.3 1E-11 2.2E-16 90.4 5.5 90 9-100 9-141 (481)
14 PRK08068 transaminase; Reviewe 99.3 6E-11 1.3E-15 84.1 9.3 89 8-99 3-96 (389)
15 PRK09276 LL-diaminopimelate am 99.2 6.5E-11 1.4E-15 83.7 9.3 88 10-100 4-96 (385)
16 PRK12414 putative aminotransfe 99.2 5.9E-11 1.3E-15 84.1 8.7 83 11-97 8-90 (384)
17 PRK09147 succinyldiaminopimela 99.2 5.9E-11 1.3E-15 84.3 8.4 84 12-100 3-93 (396)
18 PRK05942 aspartate aminotransf 99.2 8.5E-11 1.8E-15 83.5 9.2 87 9-98 7-98 (394)
19 PRK05764 aspartate aminotransf 99.2 4.5E-11 9.7E-16 84.6 7.5 85 9-97 3-92 (393)
20 TIGR03540 DapC_direct LL-diami 99.2 1.3E-10 2.7E-15 82.2 9.4 88 10-100 2-94 (383)
21 PRK07683 aminotransferase A; V 99.2 1.1E-10 2.4E-15 82.8 8.9 86 11-100 6-92 (387)
22 PLN00143 tyrosine/nicotianamin 99.2 5.4E-11 1.2E-15 85.1 6.8 66 31-100 31-100 (409)
23 PRK08363 alanine aminotransfer 99.2 7.2E-11 1.6E-15 83.9 7.3 85 10-100 4-96 (398)
24 PRK09082 methionine aminotrans 99.2 1.8E-10 4E-15 81.6 8.8 86 10-99 8-93 (386)
25 PRK07777 aminotransferase; Val 99.2 2.4E-10 5.1E-15 80.9 9.0 82 12-97 4-85 (387)
26 PRK08361 aspartate aminotransf 99.2 2.7E-10 5.9E-15 80.8 9.1 87 9-100 9-96 (391)
27 TIGR03538 DapC_gpp succinyldia 99.2 2.3E-10 5E-15 81.2 8.7 80 13-97 3-90 (393)
28 PRK06855 aminotransferase; Val 99.2 9.2E-11 2E-15 84.5 6.6 65 32-100 32-99 (433)
29 PTZ00433 tyrosine aminotransfe 99.2 1.1E-10 2.3E-15 83.5 6.9 86 12-100 13-107 (412)
30 PRK07550 hypothetical protein; 99.2 2.1E-10 4.5E-15 81.2 8.2 87 10-100 2-93 (386)
31 PLN02656 tyrosine transaminase 99.2 1.4E-10 2.9E-15 83.0 7.2 66 31-100 30-99 (409)
32 PRK07309 aromatic amino acid a 99.2 2.5E-10 5.5E-15 81.0 8.6 87 10-100 7-94 (391)
33 PRK09148 aminotransferase; Val 99.2 3.1E-10 6.6E-15 81.1 9.0 87 11-100 4-95 (405)
34 PRK07681 aspartate aminotransf 99.2 2.8E-10 6.1E-15 81.0 8.7 88 9-100 4-96 (399)
35 PRK07682 hypothetical protein; 99.1 4E-10 8.6E-15 79.5 8.9 78 19-100 6-84 (378)
36 PRK05957 aspartate aminotransf 99.1 4.3E-10 9.2E-15 79.9 8.8 90 8-100 2-92 (389)
37 PRK07865 N-succinyldiaminopime 99.1 4.1E-10 9E-15 79.1 8.6 86 8-100 1-89 (364)
38 PLN02187 rooty/superroot1 99.1 5.1E-10 1.1E-14 81.4 8.4 65 32-100 66-134 (462)
39 PRK08636 aspartate aminotransf 99.1 9E-10 1.9E-14 78.5 8.7 86 12-100 8-98 (403)
40 PRK09265 aminotransferase AlaT 99.1 5.8E-10 1.3E-14 79.5 7.3 91 5-100 1-98 (404)
41 PLN00145 tyrosine/nicotianamin 99.1 4.9E-10 1.1E-14 80.8 6.7 66 31-100 51-120 (430)
42 PRK05839 hypothetical protein; 99.1 9.9E-10 2.2E-14 77.7 8.1 63 32-100 24-86 (374)
43 PRK07590 L,L-diaminopimelate a 99.1 8.1E-10 1.7E-14 78.9 7.6 67 32-100 34-102 (409)
44 PRK09440 avtA valine--pyruvate 99.1 1E-09 2.2E-14 78.4 8.1 70 30-100 28-100 (416)
45 PRK09257 aromatic amino acid a 99.0 8.2E-10 1.8E-14 78.5 7.0 81 14-97 5-93 (396)
46 PLN02231 alanine transaminase 99.0 1.4E-09 3.1E-14 80.4 8.3 80 17-100 114-194 (534)
47 PTZ00376 aspartate aminotransf 99.0 7.1E-10 1.5E-14 79.1 5.9 84 13-100 7-98 (404)
48 PRK07568 aspartate aminotransf 99.0 2.9E-09 6.3E-14 75.4 7.9 85 9-100 2-91 (397)
49 TIGR03537 DapC succinyldiamino 98.9 4.1E-09 8.9E-14 73.8 7.3 61 34-99 2-62 (350)
50 PRK08175 aminotransferase; Val 98.9 7.7E-09 1.7E-13 73.5 8.7 64 31-97 28-91 (395)
51 PRK06207 aspartate aminotransf 98.9 6.7E-09 1.4E-13 74.3 7.3 65 33-100 40-105 (405)
52 TIGR03539 DapC_actino succinyl 98.9 1E-08 2.2E-13 72.0 8.1 63 31-100 20-83 (357)
53 PRK06836 aspartate aminotransf 98.9 1.4E-08 3.1E-13 72.2 8.8 67 32-100 33-99 (394)
54 PRK06290 aspartate aminotransf 98.8 3.1E-08 6.7E-13 71.1 8.9 64 33-100 45-109 (410)
55 PRK03317 histidinol-phosphate 98.8 1.2E-08 2.5E-13 71.9 5.5 65 33-100 27-91 (368)
56 COG1167 ARO8 Transcriptional r 98.8 3E-08 6.5E-13 72.2 6.8 68 32-100 89-158 (459)
57 TIGR01265 tyr_nico_aTase tyros 98.8 4.5E-08 9.8E-13 69.8 7.6 77 19-97 13-97 (403)
58 TIGR01264 tyr_amTase_E tyrosin 98.7 5.8E-08 1.3E-12 69.1 7.5 62 32-97 31-96 (401)
59 PLN02994 1-aminocyclopropane-1 98.7 2.3E-08 4.9E-13 63.3 3.3 57 34-100 59-120 (153)
60 PLN02397 aspartate transaminas 98.7 1.2E-07 2.5E-12 68.4 7.2 76 14-91 27-109 (423)
61 KOG0259|consensus 98.6 1.2E-07 2.6E-12 67.3 6.6 65 33-100 62-129 (447)
62 PRK02610 histidinol-phosphate 98.6 7.5E-08 1.6E-12 68.1 5.2 64 33-100 29-94 (374)
63 PRK07324 transaminase; Validat 98.6 3.1E-08 6.8E-13 70.1 2.7 52 31-87 25-76 (373)
64 PRK13238 tnaA tryptophanase/L- 98.5 1.1E-07 2.4E-12 69.4 4.3 76 11-90 10-95 (460)
65 PRK14808 histidinol-phosphate 98.5 2.8E-07 6.1E-12 64.5 5.4 59 32-97 19-77 (335)
66 TIGR03542 DAPAT_plant LL-diami 98.5 8.1E-07 1.8E-11 63.4 7.5 62 32-97 33-96 (402)
67 PF00155 Aminotran_1_2: Aminot 98.4 1.6E-07 3.4E-12 65.7 3.3 62 33-97 2-68 (363)
68 PRK09275 aspartate aminotransf 98.4 4.6E-07 9.9E-12 67.2 5.3 50 33-89 101-150 (527)
69 PRK07908 hypothetical protein; 98.3 1.7E-06 3.8E-11 60.5 5.4 51 31-86 21-71 (349)
70 PRK05387 histidinol-phosphate 98.2 1.3E-06 2.9E-11 61.0 3.9 50 32-86 24-73 (353)
71 PLN02672 methionine S-methyltr 98.2 7.7E-06 1.7E-10 64.9 7.5 62 31-100 696-757 (1082)
72 PRK06225 aspartate aminotransf 98.2 8.4E-06 1.8E-10 57.7 7.0 55 29-86 25-79 (380)
73 PRK04870 histidinol-phosphate 98.1 6.2E-06 1.3E-10 57.9 5.7 52 32-87 26-77 (356)
74 PRK14809 histidinol-phosphate 98.1 6.2E-06 1.3E-10 57.9 5.3 49 32-86 30-78 (357)
75 COG3977 Alanine-alpha-ketoisov 98.1 2.9E-05 6.2E-10 54.3 7.5 69 30-100 28-100 (417)
76 PRK01533 histidinol-phosphate 98.0 2.2E-05 4.9E-10 55.6 6.6 51 30-86 27-77 (366)
77 PRK03967 histidinol-phosphate 98.0 1.5E-05 3.3E-10 55.7 5.4 52 32-87 18-69 (337)
78 PLN02450 1-aminocyclopropane-1 98.0 5.7E-06 1.2E-10 60.5 2.8 65 33-100 39-114 (468)
79 cd00613 GDC-P Glycine cleavage 98.0 2.8E-05 6.1E-10 55.1 6.1 55 33-93 21-80 (398)
80 COG1168 MalY Bifunctional PLP- 97.9 3.5E-05 7.5E-10 54.9 6.4 60 32-97 25-84 (388)
81 PRK07392 threonine-phosphate d 97.9 1.7E-05 3.7E-10 55.8 4.7 49 32-86 22-70 (360)
82 TIGR01141 hisC histidinol-phos 97.9 1.3E-05 2.9E-10 55.8 4.2 50 32-87 19-68 (346)
83 PRK15481 transcriptional regul 97.9 1.9E-05 4.1E-10 56.9 4.3 52 33-89 86-137 (431)
84 PRK08056 threonine-phosphate d 97.8 4.2E-05 9E-10 53.8 4.4 49 32-86 20-68 (356)
85 TIGR03801 asp_4_decarbox aspar 97.7 7.1E-05 1.5E-09 55.7 5.2 57 33-96 95-152 (521)
86 PRK06939 2-amino-3-ketobutyrat 97.7 0.00011 2.5E-09 51.8 5.9 61 31-92 41-102 (397)
87 TIGR01825 gly_Cac_T_rel pyrido 97.7 0.00012 2.6E-09 51.6 6.0 61 31-92 32-93 (385)
88 PRK08153 histidinol-phosphate 97.7 5.4E-05 1.2E-09 53.6 4.2 48 33-86 33-80 (369)
89 PRK06358 threonine-phosphate d 97.7 7.9E-05 1.7E-09 52.5 4.9 48 33-86 20-67 (354)
90 PRK03321 putative aminotransfe 97.7 7.8E-05 1.7E-09 52.2 4.5 49 33-87 23-71 (352)
91 PRK05166 histidinol-phosphate 97.6 0.00016 3.4E-09 51.2 5.8 50 31-86 35-84 (371)
92 PRK09105 putative aminotransfe 97.6 0.00017 3.7E-09 51.2 5.2 48 33-86 44-91 (370)
93 PRK14807 histidinol-phosphate 97.5 0.00024 5.2E-09 49.9 5.6 50 33-86 23-72 (351)
94 PLN02376 1-aminocyclopropane-1 97.5 0.0002 4.3E-09 52.9 4.5 67 33-100 47-122 (496)
95 PLN03026 histidinol-phosphate 97.4 0.00033 7E-09 49.9 4.5 48 32-86 52-99 (380)
96 PRK03158 histidinol-phosphate 97.4 0.00044 9.6E-09 48.5 5.0 48 33-86 30-77 (359)
97 PRK02731 histidinol-phosphate 97.3 0.0011 2.5E-08 46.5 6.9 50 31-86 31-80 (367)
98 PRK00950 histidinol-phosphate 97.2 0.0008 1.7E-08 47.2 5.3 49 32-86 34-82 (361)
99 PLN02607 1-aminocyclopropane-1 97.2 0.00031 6.8E-09 51.2 3.4 65 33-100 48-123 (447)
100 cd00617 Tnase_like Tryptophana 97.2 0.00058 1.3E-08 49.8 4.6 57 30-90 9-70 (431)
101 TIGR01822 2am3keto_CoA 2-amino 97.2 0.00095 2.1E-08 47.3 5.4 54 31-88 37-98 (393)
102 PRK08637 hypothetical protein; 97.2 0.00074 1.6E-08 48.1 4.5 61 34-96 5-66 (388)
103 cd00609 AAT_like Aspartate ami 97.0 0.003 6.5E-08 43.4 6.1 55 35-92 1-55 (350)
104 KOG0258|consensus 96.8 0.0076 1.6E-07 43.6 6.7 52 47-100 88-139 (475)
105 TIGR00858 bioF 8-amino-7-oxono 96.4 0.015 3.1E-07 40.5 6.0 56 30-86 14-74 (360)
106 PLN02822 serine palmitoyltrans 96.2 0.01 2.2E-07 43.8 4.9 56 32-88 109-169 (481)
107 TIGR01140 L_thr_O3P_dcar L-thr 95.6 0.018 3.9E-07 40.2 3.6 44 32-86 17-60 (330)
108 PRK05958 8-amino-7-oxononanoat 95.5 0.06 1.3E-06 37.8 6.1 60 31-91 38-98 (385)
109 KOG0634|consensus 95.1 0.022 4.7E-07 41.7 2.9 69 19-87 21-114 (472)
110 COG0079 HisC Histidinol-phosph 95.1 0.06 1.3E-06 38.5 5.1 49 33-87 23-71 (356)
111 PRK04366 glycine dehydrogenase 95.1 0.074 1.6E-06 39.3 5.6 55 36-93 72-129 (481)
112 PRK00451 glycine dehydrogenase 94.8 0.083 1.8E-06 38.3 5.3 68 20-93 51-128 (447)
113 PLN02721 threonine aldolase 94.3 0.031 6.8E-07 38.8 2.0 51 33-89 6-56 (353)
114 PRK08354 putative aminotransfe 94.2 0.13 2.7E-06 35.7 4.9 47 32-87 8-54 (311)
115 PRK04635 histidinol-phosphate 94.1 0.051 1.1E-06 38.2 2.9 42 33-86 32-73 (354)
116 PLN02483 serine palmitoyltrans 93.1 0.1 2.2E-06 38.8 3.0 51 37-88 111-161 (489)
117 PLN02672 methionine S-methyltr 92.7 0.29 6.3E-06 39.9 5.2 47 51-100 406-452 (1082)
118 COG1448 TyrB Aspartate/tyrosin 91.8 0.98 2.1E-05 32.8 6.4 71 14-86 5-82 (396)
119 TIGR00713 hemL glutamate-1-sem 91.3 0.37 8.1E-06 34.7 4.1 53 32-87 48-102 (423)
120 cd06450 DOPA_deC_like DOPA dec 91.2 0.82 1.8E-05 31.7 5.7 45 46-93 10-54 (345)
121 PRK10534 L-threonine aldolase; 90.4 0.4 8.6E-06 33.3 3.4 38 46-87 11-48 (333)
122 KOG0256|consensus 86.4 0.89 1.9E-05 33.5 3.1 33 66-98 114-148 (471)
123 PRK02627 acetylornithine amino 84.0 2.5 5.3E-05 30.0 4.5 56 32-92 39-96 (396)
124 PRK00062 glutamate-1-semialdeh 81.4 2.3 5E-05 30.9 3.6 52 32-86 50-103 (426)
125 cd00610 OAT_like Acetyl ornith 78.2 5.7 0.00012 28.3 4.7 57 32-92 36-94 (413)
126 PRK05664 threonine-phosphate d 77.9 2.7 5.8E-05 29.3 2.9 44 33-88 21-64 (330)
127 TIGR01977 am_tr_V_EF2568 cyste 76.8 3.1 6.6E-05 29.2 3.0 50 37-87 3-58 (376)
128 cd06502 TA_like Low-specificit 75.9 4.2 9E-05 28.0 3.4 37 47-87 10-46 (338)
129 PRK03244 argD acetylornithine 75.6 3.9 8.3E-05 29.2 3.2 55 32-91 43-99 (398)
130 cd06454 KBL_like KBL_like; thi 72.0 10 0.00022 26.2 4.6 45 48-92 17-61 (349)
131 TIGR00707 argD acetylornithine 70.3 14 0.00031 25.9 5.1 56 32-92 27-84 (379)
132 PRK15407 lipopolysaccharide bi 67.8 14 0.0003 27.2 4.6 50 33-88 24-78 (438)
133 PLN03227 serine palmitoyltrans 66.3 6.8 0.00015 28.2 2.8 41 48-88 14-58 (392)
134 PF14097 SpoVAE: Stage V sporu 65.6 6.3 0.00014 25.6 2.2 46 33-79 26-75 (180)
135 cd06409 PB1_MUG70 The MUG70 pr 63.5 6.4 0.00014 22.6 1.8 20 69-88 17-36 (86)
136 TIGR01976 am_tr_V_VC1184 cyste 63.3 13 0.00029 26.3 3.8 51 34-86 18-73 (397)
137 PRK08088 4-aminobutyrate amino 61.0 35 0.00075 24.8 5.6 56 33-92 42-99 (425)
138 PRK10347 cell filamentation pr 59.3 19 0.00041 23.9 3.7 69 17-88 62-130 (200)
139 KOG1411|consensus 59.0 29 0.00063 25.4 4.8 67 19-87 36-109 (427)
140 PRK01688 histidinol-phosphate 58.6 19 0.0004 25.4 3.8 42 33-86 29-70 (351)
141 PRK04781 histidinol-phosphate 57.2 7.2 0.00016 27.6 1.6 20 66-86 53-72 (364)
142 PF03748 FliL: Flagellar basal 56.7 15 0.00031 20.9 2.6 40 49-90 44-83 (99)
143 PRK06234 methionine gamma-lyas 55.9 6.9 0.00015 28.3 1.3 43 41-87 29-78 (400)
144 TIGR01437 selA_rel uncharacter 55.0 31 0.00067 24.6 4.5 38 46-93 24-61 (363)
145 PRK02936 argD acetylornithine 54.7 43 0.00094 23.6 5.2 55 32-91 29-85 (377)
146 PF13092 CENP-L: Kinetochore c 54.6 11 0.00024 24.0 2.0 25 72-96 11-35 (162)
147 KOG4465|consensus 54.3 23 0.0005 26.1 3.7 20 71-91 167-186 (598)
148 KOG3074|consensus 54.1 11 0.00023 25.8 1.9 24 69-93 148-171 (263)
149 KOG0571|consensus 51.2 14 0.00029 27.8 2.2 48 32-82 258-305 (543)
150 COG3737 Uncharacterized conser 49.6 33 0.00071 21.1 3.3 42 16-58 54-95 (127)
151 cd00378 SHMT Serine-glycine hy 48.9 37 0.00081 24.1 4.2 59 32-93 19-81 (402)
152 PRK06959 putative threonine-ph 46.2 7.9 0.00017 27.2 0.3 41 33-86 25-66 (339)
153 PLN02855 Bifunctional selenocy 44.6 42 0.00092 24.2 3.9 53 33-87 32-90 (424)
154 PF05953 Allatostatin: Allatos 44.2 15 0.00031 12.9 0.8 7 34-40 5-11 (11)
155 cd06407 PB1_NLP A PB1 domain i 44.1 20 0.00044 20.2 1.8 20 69-88 16-35 (82)
156 cd07491 Peptidases_S8_7 Peptid 42.0 81 0.0018 21.3 4.8 30 31-61 102-135 (247)
157 TIGR03588 PseC UDP-4-keto-6-de 41.7 29 0.00062 24.7 2.6 38 49-91 10-47 (380)
158 cd07492 Peptidases_S8_8 Peptid 41.6 47 0.001 21.6 3.5 31 30-61 90-120 (222)
159 cd05125 Mth938_2P1-like Mth938 40.4 82 0.0018 18.9 4.1 40 17-57 40-79 (114)
160 cd07476 Peptidases_S8_thiazoli 40.2 49 0.0011 22.6 3.5 31 31-61 106-137 (267)
161 PF09673 TrbC_Ftype: Type-F co 40.2 80 0.0017 18.7 4.1 44 46-89 8-51 (113)
162 TIGR01979 sufS cysteine desulf 39.8 79 0.0017 22.4 4.7 54 32-87 17-76 (403)
163 TIGR03403 nifS_epsilon cystein 39.8 28 0.0006 24.6 2.3 41 47-88 11-54 (382)
164 KOG0257|consensus 38.9 23 0.0005 26.2 1.8 41 46-89 48-89 (420)
165 COG2184 Fic Protein involved i 38.1 1E+02 0.0022 20.6 4.6 62 17-88 64-125 (201)
166 PF09183 DUF1947: Domain of un 35.6 40 0.00086 18.3 2.0 18 80-97 11-28 (65)
167 PRK09064 5-aminolevulinate syn 34.5 1.7E+02 0.0037 20.9 6.6 54 32-86 46-104 (407)
168 COG1580 FliL Flagellar basal b 34.1 68 0.0015 20.5 3.2 39 49-89 103-141 (159)
169 KOG2178|consensus 32.7 57 0.0012 24.1 2.9 30 32-62 193-225 (409)
170 COG0278 Glutaredoxin-related p 32.7 94 0.002 18.5 3.4 63 22-86 5-67 (105)
171 PF13592 HTH_33: Winged helix- 30.5 32 0.00069 17.9 1.1 16 80-95 8-23 (60)
172 PRK11658 UDP-4-amino-4-deoxy-L 30.2 53 0.0012 23.5 2.5 35 50-89 15-49 (379)
173 COG4867 Uncharacterized protei 30.0 72 0.0016 24.2 3.1 31 39-72 17-47 (652)
174 PRK09331 Sep-tRNA:Cys-tRNA syn 30.0 86 0.0019 22.4 3.6 42 46-87 31-77 (387)
175 KOG1412|consensus 29.7 1.2E+02 0.0026 22.2 4.0 53 33-86 31-87 (410)
176 KOG4266|consensus 29.5 80 0.0017 25.2 3.4 35 19-54 277-316 (1033)
177 PRK10628 LigB family dioxygena 29.2 92 0.002 21.4 3.4 27 67-95 62-88 (246)
178 PRK07718 fliL flagellar basal 28.4 68 0.0015 19.8 2.5 39 50-90 88-126 (142)
179 cd05560 Xcc1710_like Xcc1710_l 27.8 1.4E+02 0.0029 17.6 3.9 26 31-57 52-77 (109)
180 COG0602 NrdG Organic radical a 27.2 1.2E+02 0.0026 20.2 3.6 25 32-57 72-97 (212)
181 PF07455 Psu: Phage polarity s 27.1 46 0.001 22.0 1.6 15 75-89 124-138 (188)
182 cd00248 Mth938-like Mth938-lik 27.0 1.4E+02 0.0031 17.5 4.2 26 31-57 52-77 (109)
183 PF07862 Nif11: Nitrogen fixat 26.7 62 0.0014 15.9 1.8 9 89-97 38-46 (49)
184 PRK13347 coproporphyrinogen II 26.5 84 0.0018 23.3 3.0 27 33-60 105-131 (453)
185 PRK05476 S-adenosyl-L-homocyst 26.4 2.7E+02 0.0059 20.8 5.6 60 33-95 342-406 (425)
186 PF02873 MurB_C: UDP-N-acetyle 26.3 63 0.0014 19.1 1.9 24 74-97 77-100 (105)
187 TIGR02742 TrbC_Ftype type-F co 26.2 1.7E+02 0.0036 18.1 4.1 43 46-88 9-51 (130)
188 cd06831 PLPDE_III_ODC_like_AZI 25.9 1.7E+02 0.0037 21.3 4.5 29 32-60 204-232 (394)
189 TIGR03392 FeS_syn_CsdA cystein 25.5 1.7E+02 0.0037 20.8 4.4 52 33-87 16-74 (398)
190 PF15053 Njmu-R1: Mjmu-R1-like 25.1 66 0.0014 23.3 2.2 18 71-88 46-63 (353)
191 PRK13392 5-aminolevulinate syn 25.1 2.3E+02 0.0051 20.3 5.1 53 34-87 48-105 (410)
192 PF02784 Orn_Arg_deC_N: Pyrido 24.9 1.5E+02 0.0032 19.8 3.8 29 32-60 197-228 (251)
193 COG0635 HemN Coproporphyrinoge 24.9 89 0.0019 23.1 2.9 24 33-57 89-112 (416)
194 PF13344 Hydrolase_6: Haloacid 24.7 43 0.00092 19.3 1.0 21 78-100 43-63 (101)
195 TIGR03235 DNA_S_dndA cysteine 24.6 91 0.002 21.7 2.8 14 47-60 10-23 (353)
196 PRK08446 coproporphyrinogen II 24.6 95 0.0021 22.1 2.9 25 33-58 53-77 (350)
197 PRK11706 TDP-4-oxo-6-deoxy-D-g 24.5 2.3E+02 0.0051 20.1 4.9 33 52-92 14-46 (375)
198 TIGR01821 5aminolev_synth 5-am 24.3 2.5E+02 0.0053 20.1 5.1 53 33-86 46-103 (402)
199 PRK10874 cysteine sulfinate de 24.2 1.3E+02 0.0029 21.4 3.6 53 33-87 19-77 (401)
200 COG3836 HpcH 2,4-dihydroxyhept 23.9 73 0.0016 22.0 2.1 53 35-93 179-231 (255)
201 PRK09057 coproporphyrinogen II 23.7 1.1E+02 0.0023 22.2 3.1 25 33-58 57-81 (380)
202 PF07208 DUF1414: Protein of u 23.7 99 0.0021 15.4 2.1 13 76-88 26-38 (44)
203 cd07493 Peptidases_S8_9 Peptid 23.5 1.3E+02 0.0028 20.1 3.3 14 31-44 104-117 (261)
204 smart00335 ANX Annexin repeats 23.4 65 0.0014 15.8 1.5 16 79-94 19-34 (53)
205 PRK06654 fliL flagellar basal 23.3 1.3E+02 0.0029 19.7 3.2 36 49-89 127-162 (181)
206 TIGR02159 PA_CoA_Oxy4 phenylac 23.0 1.8E+02 0.0038 18.3 3.6 57 35-93 29-89 (146)
207 KOG1549|consensus 23.0 1.7E+02 0.0036 22.0 3.9 57 32-89 42-101 (428)
208 PRK06582 coproporphyrinogen II 22.8 1E+02 0.0022 22.4 2.9 25 33-58 64-88 (390)
209 cd00332 PAL-HAL Phenylalanine 22.8 2.7E+02 0.0059 20.9 5.1 47 36-88 75-121 (444)
210 PRK08455 fliL flagellar basal 22.7 91 0.002 20.3 2.3 40 49-90 127-166 (182)
211 PRK10415 tRNA-dihydrouridine s 22.5 69 0.0015 22.6 1.9 38 47-87 251-288 (321)
212 PF00538 Linker_histone: linke 22.2 76 0.0016 17.3 1.7 18 79-96 24-41 (77)
213 cd07362 HPCD_like Class III ex 22.0 1.3E+02 0.0028 20.7 3.1 27 67-95 84-110 (272)
214 PF04430 DUF498: Protein of un 22.0 71 0.0015 18.7 1.6 39 18-57 40-78 (110)
215 PRK07021 fliL flagellar basal 21.9 1E+02 0.0023 19.4 2.5 41 49-91 103-143 (162)
216 PLN02409 serine--glyoxylate am 21.8 78 0.0017 22.8 2.1 22 72-93 37-58 (401)
217 PRK13393 5-aminolevulinate syn 21.7 3.1E+02 0.0067 19.6 6.1 58 33-91 46-104 (406)
218 cd07363 45_DOPA_Dioxygenase Th 21.7 1.5E+02 0.0033 20.0 3.4 25 71-96 75-99 (253)
219 PF09748 Med10: Transcription 21.6 36 0.00078 20.8 0.3 23 68-90 96-118 (128)
220 PRK05696 fliL flagellar basal 21.5 1E+02 0.0022 19.7 2.4 37 50-88 112-148 (170)
221 PF05002 SGS: SGS domain ; In 21.4 47 0.001 18.9 0.7 23 73-95 36-58 (82)
222 PF06099 Phenol_hyd_sub: Pheno 21.1 46 0.00099 17.7 0.6 10 35-44 25-34 (59)
223 PF06348 DUF1059: Protein of u 21.1 1.4E+02 0.0031 15.4 4.2 35 47-87 21-55 (57)
224 PF10929 DUF2811: Protein of u 21.1 1.5E+02 0.0032 15.7 3.5 40 46-93 5-44 (57)
225 PRK09295 bifunctional cysteine 20.5 2.6E+02 0.0057 19.9 4.6 53 33-87 23-81 (406)
226 PF00221 Lyase_aromatic: Aroma 20.2 79 0.0017 23.8 1.9 48 35-88 79-126 (473)
No 1
>KOG0257|consensus
Probab=99.56 E-value=1.8e-14 Score=101.85 Aligned_cols=91 Identities=40% Similarity=0.607 Sum_probs=81.7
Q ss_pred CCCCChhhcccchhHHHHHHHhhcCCCcee-cCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHH
Q psy782 7 KFALPPRFEASVYSVWVEFIQLSLDHKPLN-LGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKL 85 (100)
Q Consensus 7 ~~~~s~r~~~~~~~~~~~~~~~~~~~~~i~-l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~ 85 (100)
.+..++++....+++|.++.+++.+..+.+ ||+|+|++ +||+.+.+++++++++. ..+||++..|+|+||++|++.
T Consensus 5 ~~~~~~~l~~~~~~vw~e~~~la~e~~~~~~LgqGfp~~-~~P~fv~ea~~~~~~~~--~~~qYt~~~G~p~L~~aL~k~ 81 (420)
T KOG0257|consen 5 KRLRNRNLSTSKPYVWTEINRLAAEHKVPNPLGQGFPDF-PPPKFVTEAAKNAAKEP--STNQYTRGYGLPQLRKALAKA 81 (420)
T ss_pred cccccccccccCCcHHHHHHHHHHhcCCCCcccCCCCCC-CCcHHHHHHHHHHhccc--hhccccccCCchHHHHHHHHH
Confidence 345577888888899999999988877777 99999999 99999999999999886 589999999999999999999
Q ss_pred HhhhhCCCCCCCCCC
Q psy782 86 YSSLIERPLLPHQLV 100 (100)
Q Consensus 86 ~~~~~g~~~~~~~eI 100 (100)
++..||..+++++||
T Consensus 82 ~se~~~~~~~~~~eV 96 (420)
T KOG0257|consen 82 YSEFYGGLLDPDDEV 96 (420)
T ss_pred HHHHhccccCCcccE
Confidence 999899999998776
No 2
>PLN00175 aminotransferase family protein; Provisional
Probab=99.55 E-value=3.6e-14 Score=101.48 Aligned_cols=89 Identities=30% Similarity=0.557 Sum_probs=78.2
Q ss_pred CCCChhhcccchhHHHHHHHhhcCCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHh
Q psy782 8 FALPPRFEASVYSVWVEFIQLSLDHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYS 87 (100)
Q Consensus 8 ~~~s~r~~~~~~~~~~~~~~~~~~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~ 87 (100)
+.++.|+..+..+.+..+.+.+...++|+|++|.|++ .+|+.+.+++.+++++. .++|++..|.++||++||+++.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~P~~-~~~~~~~~~~~~~~~~~---~~~Y~~~~G~~~Lr~aia~~~~ 105 (413)
T PLN00175 30 LQVAKRLEKFKTTIFTQMSSLAIKHGAINLGQGFPNF-DGPDFVKEAAIQAIRDG---KNQYARGFGVPELNSAIAERFK 105 (413)
T ss_pred cchhHHhhcCCCCHHHHHHHHhhcCCeEecCCCCCCC-CCCHHHHHHHHHHHhcC---CCCcCCCCCCHHHHHHHHHHHH
Confidence 4578888888899998888887777999999999999 88899999999998764 6799999999999999999999
Q ss_pred hhhCCCCCCCCCC
Q psy782 88 SLIERPLLPHQLV 100 (100)
Q Consensus 88 ~~~g~~~~~~~eI 100 (100)
+.+|++++++++|
T Consensus 106 ~~~g~~~~~~~~I 118 (413)
T PLN00175 106 KDTGLVVDPEKEV 118 (413)
T ss_pred HHhCCCCCCCCCE
Confidence 8889988887444
No 3
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=99.49 E-value=1.5e-13 Score=98.11 Aligned_cols=65 Identities=25% Similarity=0.418 Sum_probs=58.9
Q ss_pred CCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCCCCCCCCCC
Q psy782 32 HKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIERPLLPHQLV 100 (100)
Q Consensus 32 ~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~eI 100 (100)
.++|+|++|+||+ ++|+++.+++.+++..+ ..+|++..|+++||++||+++.+++|+.+++++||
T Consensus 28 ~~vi~l~iG~Pd~-~~p~~i~~a~~~a~~~~---~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~ei 92 (393)
T COG0436 28 EDVIDLSIGEPDF-PTPEHIIEAAIEALEEG---GTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEI 92 (393)
T ss_pred CCEEEeCCCCCCC-CCCHHHHHHHHHHHhcc---cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeE
Confidence 4699999999999 99999999999998876 22888999999999999999999999999998555
No 4
>PRK08912 hypothetical protein; Provisional
Probab=99.36 E-value=5.1e-12 Score=89.41 Aligned_cols=86 Identities=35% Similarity=0.512 Sum_probs=71.2
Q ss_pred ChhhcccchhHHHHHHHhhcCCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhh
Q psy782 11 PPRFEASVYSVWVEFIQLSLDHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLI 90 (100)
Q Consensus 11 s~r~~~~~~~~~~~~~~~~~~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~ 90 (100)
++++..+..+.+..+.+.....++|+|+.|.|+. .+|..+.+++.+.+... ..+|++..|.++||++||+++.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~-~~p~~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~~~~~~ 80 (387)
T PRK08912 5 NPVFADLPTTIFEVMSQLAREHGAINLGQGFPDD-PGPEDVRRAAADALLDG---SNQYPPMMGLPELRQAVAAHYARFQ 80 (387)
T ss_pred hHHHhhCCCCHHHHHHHHHhhCCeEEccCCCCCC-CCCHHHHHHHHHHHhcC---CCCCCCCCCcHHHHHHHHHHHHHHh
Confidence 5677777788888888877777899999999998 66667778888777654 5789999999999999999999888
Q ss_pred CCCCCCCCCC
Q psy782 91 ERPLLPHQLV 100 (100)
Q Consensus 91 g~~~~~~~eI 100 (100)
|+.++++++|
T Consensus 81 g~~~~~~~~i 90 (387)
T PRK08912 81 GLDLDPETEV 90 (387)
T ss_pred CCCCCCcccE
Confidence 9988886343
No 5
>PRK06107 aspartate aminotransferase; Provisional
Probab=99.33 E-value=8.2e-12 Score=88.91 Aligned_cols=91 Identities=19% Similarity=0.181 Sum_probs=72.8
Q ss_pred ccCCCCChhhcccchhHHHHHHHh-----hcCCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHH
Q psy782 5 ASKFALPPRFEASVYSVWVEFIQL-----SLDHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIV 79 (100)
Q Consensus 5 m~~~~~s~r~~~~~~~~~~~~~~~-----~~~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR 79 (100)
|++|++++|+.....+.+..+... ....++|+|+.|.|++ .+++.+.+++.+++... .++|+++.|.++||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~-~~~~~~~~~~~~~~~~~---~~~Y~~~~G~~~lr 76 (402)
T PRK06107 1 MSTFVPAARVSRIKPSPSTAAAARARELRAAGRSIVDLTVGEPDF-DTPDHIKQAAVAAIERG---ETKYTLVNGTPALR 76 (402)
T ss_pred CCchhhhHHhhhcCccHHHHHHHHHHHHHhccCCEEEcCCCCCCC-CCCHHHHHHHHHHHHcC---CCCCCCCCCCHHHH
Confidence 445578889987777665444332 2345789999999999 77888999999988764 57899999999999
Q ss_pred HHHHHHHhhhhCCCCCCCCCC
Q psy782 80 QAIAKLYSSLIERPLLPHQLV 100 (100)
Q Consensus 80 ~aia~~~~~~~g~~~~~~~eI 100 (100)
+++++++++.+|+.++++ +|
T Consensus 77 ~~ia~~l~~~~g~~~~~~-~i 96 (402)
T PRK06107 77 KAIIAKLERRNGLHYADN-EI 96 (402)
T ss_pred HHHHHHHHHhcCCCCChh-hE
Confidence 999999998889988877 54
No 6
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=99.33 E-value=5.1e-12 Score=92.74 Aligned_cols=88 Identities=17% Similarity=0.185 Sum_probs=69.5
Q ss_pred CCCCChhhcccchhHHHHHHHhh-----cCCCceecCCCCCC---CCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHH
Q psy782 7 KFALPPRFEASVYSVWVEFIQLS-----LDHKPLNLGQGFPD---YESAPSHVSKGLADAATGENKLLNQYTRGFGHPRI 78 (100)
Q Consensus 7 ~~~~s~r~~~~~~~~~~~~~~~~-----~~~~~i~l~~G~P~---~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~L 78 (100)
.+.+++|+.++..+.+..+...+ ...++|+|++|+|+ + .+|+.+.+++.+.+.. .++|++..|+++|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~G~p~~~~~-~~p~~~~~~~~~~~~~----~~~Y~~~~G~~~l 190 (517)
T PRK13355 116 TFKKSHKLDNVLYDVRGPVVDEANRMEAAGTHILKLNIGNPAPFGF-RTPDEVVYDMAQQLTD----TEGYSDSKGLFSA 190 (517)
T ss_pred CCChhHHhhccCccHHHHHHHHHHHHHHcCCCeEEecCcCCCcCCC-CCCHHHHHHHHHHhhc----CCCCCCCcChHHH
Confidence 35678999998888776665432 23579999999994 5 6788888988887753 4689999999999
Q ss_pred HHHHHHHHhhhhCCCCCCCCCC
Q psy782 79 VQAIAKLYSSLIERPLLPHQLV 100 (100)
Q Consensus 79 R~aia~~~~~~~g~~~~~~~eI 100 (100)
|++||++++++++..++++ +|
T Consensus 191 Reaia~~~~~~~~~~~~~~-~I 211 (517)
T PRK13355 191 RKAIMQYAQLKGLPNVDVD-DI 211 (517)
T ss_pred HHHHHHHHHhcCCCCCChh-HE
Confidence 9999999988765568887 54
No 7
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=99.32 E-value=1e-11 Score=87.87 Aligned_cols=88 Identities=18% Similarity=0.257 Sum_probs=69.8
Q ss_pred CChhhcccchhHHHHHHHhh-----cCCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHH
Q psy782 10 LPPRFEASVYSVWVEFIQLS-----LDHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAK 84 (100)
Q Consensus 10 ~s~r~~~~~~~~~~~~~~~~-----~~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~ 84 (100)
+++|+..+..+.+..+.+.. ...++|+|+.|+|++ .|++.+.+++.+++... ...+|++..|.++||++||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~lr~aia~ 79 (388)
T PRK07366 3 FAQRLQPLQSNVFADMDRAKAQARAAGKELIDLSLGSSDL-PAPAHALEAIAQSLHDP--STHGYLLFHGTLDFREAAAQ 79 (388)
T ss_pred hhhhhhcCCccHHHHHHHHHHHHHhcCCCeEEeCCCCCCC-CCCHHHHHHHHHHHhCc--ccCCCCCCCCCHHHHHHHHH
Confidence 56777777766665554432 235789999999999 88889999999887654 35789999999999999999
Q ss_pred HHhhhhCCCCCCCCCC
Q psy782 85 LYSSLIERPLLPHQLV 100 (100)
Q Consensus 85 ~~~~~~g~~~~~~~eI 100 (100)
++.+.+|+.++++++|
T Consensus 80 ~~~~~~g~~~~~~~~I 95 (388)
T PRK07366 80 WYEQRFGLAVDPETEV 95 (388)
T ss_pred HHHHhhCCcCCCcCeE
Confidence 9998889988887334
No 8
>PRK08960 hypothetical protein; Provisional
Probab=99.29 E-value=1.5e-11 Score=87.12 Aligned_cols=87 Identities=18% Similarity=0.235 Sum_probs=72.9
Q ss_pred CCChhhcccchhHHHHHHHhhc-----CCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHH
Q psy782 9 ALPPRFEASVYSVWVEFIQLSL-----DHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIA 83 (100)
Q Consensus 9 ~~s~r~~~~~~~~~~~~~~~~~-----~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia 83 (100)
.++.+++++..+.+..+.+.+. .+++|+|+.|.|++ ++|+.+.+++.+.+... ..+|++..|.++||++||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~-~~~~~v~~a~~~~~~~~---~~~Y~~~~g~~~lr~~ia 79 (387)
T PRK08960 4 GYSRRSRDIEPFHVMALLARANELEAAGHDVIHLEIGEPDF-TTAEPIVAAGQAALAAG---HTRYTAARGLPALREAIA 79 (387)
T ss_pred chhhHHHhCCchHHHHHHHHHHHHHhcCCCeEEeCCCCCCC-CCCHHHHHHHHHHHhcC---CCccCCCCCCHHHHHHHH
Confidence 3577888888888877776543 35789999999998 88999999999988754 568999999999999999
Q ss_pred HHHhhhhCCCCCCCCCC
Q psy782 84 KLYSSLIERPLLPHQLV 100 (100)
Q Consensus 84 ~~~~~~~g~~~~~~~eI 100 (100)
+++.+.+|+.++++ +|
T Consensus 80 ~~~~~~~g~~~~~~-~i 95 (387)
T PRK08960 80 GFYAQRYGVDVDPE-RI 95 (387)
T ss_pred HHHHHHhCCCCChh-hE
Confidence 99998889988887 54
No 9
>PLN02368 alanine transaminase
Probab=99.29 E-value=4.4e-12 Score=90.91 Aligned_cols=90 Identities=17% Similarity=0.176 Sum_probs=67.1
Q ss_pred CCChhhcccchhHHHHHHHhh-----cCCCceecCCCCCCCC-----------------------------CchHHHHHH
Q psy782 9 ALPPRFEASVYSVWVEFIQLS-----LDHKPLNLGQGFPDYE-----------------------------SAPSHVSKG 54 (100)
Q Consensus 9 ~~s~r~~~~~~~~~~~~~~~~-----~~~~~i~l~~G~P~~~-----------------------------~pp~~l~~a 54 (100)
.+++|+..+..+.+..+...+ ...++|+|++|+|++. +|++.+.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~vi~l~iG~Pd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~i~~a 89 (407)
T PLN02368 10 SLNENVKKCQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDDPNVGLLFPADAIARA 89 (407)
T ss_pred hcCHHHHhhhhhcCCHHHHHHHHHHHHhhhhhcccCCChhHcCCCCchHHHHHHHHhcCchhcCCccccccCCHHHHHHH
Confidence 468888888777665554432 2358999999999730 277888888
Q ss_pred HHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCCCCCCCCCC
Q psy782 55 LADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIERPLLPHQLV 100 (100)
Q Consensus 55 ~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~eI 100 (100)
+....... ...++|++..|+++||++||+++++++|+.++++ +|
T Consensus 90 ~~~l~~~~-~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~-~I 133 (407)
T PLN02368 90 KHYLSLTS-GGLGAYSDSRGLPGVRKEVAEFIERRDGYPSDPE-LI 133 (407)
T ss_pred HHHHhcCC-CCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChh-hE
Confidence 76533221 1367899999999999999999998889988887 54
No 10
>PRK07337 aminotransferase; Validated
Probab=99.27 E-value=2.1e-11 Score=86.36 Aligned_cols=87 Identities=25% Similarity=0.367 Sum_probs=70.8
Q ss_pred CCChhhcccchhHHHHHHHhhc-----CCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHH
Q psy782 9 ALPPRFEASVYSVWVEFIQLSL-----DHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIA 83 (100)
Q Consensus 9 ~~s~r~~~~~~~~~~~~~~~~~-----~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia 83 (100)
++++++.....+.+..+.+... ..++|+|+.|.|++ .+++.+.+++.+.++.. ..+|++..|.++||++||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~-~~~~~~~~~~~~~~~~~---~~~Y~~~~g~~~lr~~ia 77 (388)
T PRK07337 2 RLAARVDAIEPFYVMELAKEAQALERAGRDIIHMGIGEPDF-TAPEPVVEAAARALRRG---VTQYTSALGLAPLREAIA 77 (388)
T ss_pred chhhHhHhcCchHHHHHHHHHHHHHhcCCCEEEeCCcCCCC-CCCHHHHHHHHHHHhcC---CCCCCCCCCCHHHHHHHH
Confidence 4577777777776666655432 35799999999999 77888899999888754 678999999999999999
Q ss_pred HHHhhhhCCCCCCCCCC
Q psy782 84 KLYSSLIERPLLPHQLV 100 (100)
Q Consensus 84 ~~~~~~~g~~~~~~~eI 100 (100)
+++.+.+|+.++++ +|
T Consensus 78 ~~~~~~~~~~~~~~-~i 93 (388)
T PRK07337 78 AWYARRFGLDVAPE-RI 93 (388)
T ss_pred HHHHHHhCCCCChH-hE
Confidence 99998889888887 54
No 11
>PRK06108 aspartate aminotransferase; Provisional
Probab=99.26 E-value=4.5e-11 Score=84.12 Aligned_cols=84 Identities=24% Similarity=0.224 Sum_probs=69.1
Q ss_pred hhhcccchhHHHHHHHhhc-CCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhh
Q psy782 12 PRFEASVYSVWVEFIQLSL-DHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLI 90 (100)
Q Consensus 12 ~r~~~~~~~~~~~~~~~~~-~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~ 90 (100)
+++..+..+.+..+...+. ..++|+|+.|+|++ ++++.+.+++.+++.+. ..+|++..|.++||++||+++.+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~-~~~~~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~~la~~~~~~~ 78 (382)
T PRK06108 3 PAARALPESGIREVANAGRGREGVLPLWFGESDL-PTPDFIRDAAAAALADG---ETFYTHNLGIPELREALARYVSRLH 78 (382)
T ss_pred hhhhhCCchHHHHHHHHHhccCCeEEecCCCCCC-CCCHHHHHHHHHHHhcC---CCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 3455566677777777653 35789999999999 88899999999988775 5679999999999999999999888
Q ss_pred CCCCCCCCCC
Q psy782 91 ERPLLPHQLV 100 (100)
Q Consensus 91 g~~~~~~~eI 100 (100)
|+.++++ +|
T Consensus 79 ~~~~~~~-~i 87 (382)
T PRK06108 79 GVATPPE-RI 87 (382)
T ss_pred CCCcCcc-eE
Confidence 9888877 54
No 12
>PRK06348 aspartate aminotransferase; Provisional
Probab=99.25 E-value=3.4e-11 Score=85.23 Aligned_cols=89 Identities=17% Similarity=0.231 Sum_probs=70.9
Q ss_pred CCCCChhhcccchhHHHHHHHhhc-CCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHH
Q psy782 7 KFALPPRFEASVYSVWVEFIQLSL-DHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKL 85 (100)
Q Consensus 7 ~~~~s~r~~~~~~~~~~~~~~~~~-~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~ 85 (100)
+..+++++.......++.+.+... ..++|+|+.|+|++ .+++.+.+++.+.+... ..+|++..|.++||++||++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~-~~~~~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~ 78 (384)
T PRK06348 3 NKFLAKKYQQMEVNIMAEIATLAKKFPDIIDLSLGDPDL-ITDESIINAAFEDAKKG---HTRYTDSGGDVELIEEIIKY 78 (384)
T ss_pred chHHHHHHhcCCccHHHHHHHHHHhcCCcEEcCCCCCCC-CCCHHHHHHHHHHHhcC---CCCCCCCCCcHHHHHHHHHH
Confidence 334677888888888888877654 35799999999999 77777776665555544 67899999999999999999
Q ss_pred HhhhhCCCCCCCCCC
Q psy782 86 YSSLIERPLLPHQLV 100 (100)
Q Consensus 86 ~~~~~g~~~~~~~eI 100 (100)
+.+.+|+.++++ +|
T Consensus 79 ~~~~~~~~~~~~-~i 92 (384)
T PRK06348 79 YSKNYDLSFKRN-EI 92 (384)
T ss_pred HHHHhCCCCChh-hE
Confidence 988889988887 54
No 13
>PTZ00377 alanine aminotransferase; Provisional
Probab=99.25 E-value=1e-11 Score=90.45 Aligned_cols=90 Identities=19% Similarity=0.183 Sum_probs=67.0
Q ss_pred CCChhhcccchhHHHHHHH----hh----cC------CCceecCCCCCC----------------CCCc-----------
Q psy782 9 ALPPRFEASVYSVWVEFIQ----LS----LD------HKPLNLGQGFPD----------------YESA----------- 47 (100)
Q Consensus 9 ~~s~r~~~~~~~~~~~~~~----~~----~~------~~~i~l~~G~P~----------------~~~p----------- 47 (100)
.+++|+.++..+....+.. +. .. .++|+|++|+|+ + .+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~vi~~~~G~p~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~~~ 87 (481)
T PTZ00377 9 DINPRVVAAEYAVRGLVPARAAEIKEELKTGKGKYPFDSIVYCNIGNPQALGQKPLTFYRQVLSLV-EYPFLLEDPSVSS 87 (481)
T ss_pred ccCHHHhhhhhhcCChHHHHHHHHHHHHhcCCccCCcceeEEcCCCChhhcCCCCchHHHHHHHHc-cChhhhcCccccc
Confidence 4788888887765443322 11 11 479999999996 7 55
Q ss_pred --hHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCCCCCCCCCC
Q psy782 48 --PSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIERPLLPHQLV 100 (100)
Q Consensus 48 --p~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~eI 100 (100)
|..+.+++.++++.......+|++..|+++||++||+++.+.+|+.++++ +|
T Consensus 88 ~~P~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~-~I 141 (481)
T PTZ00377 88 LFPADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPS-DI 141 (481)
T ss_pred cCCHHHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCChh-hE
Confidence 34777777777765322357799999999999999999998889999887 64
No 14
>PRK08068 transaminase; Reviewed
Probab=99.25 E-value=6e-11 Score=84.07 Aligned_cols=89 Identities=25% Similarity=0.355 Sum_probs=69.8
Q ss_pred CCCChhhcccchhHHHHHHHhh-----cCCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHH
Q psy782 8 FALPPRFEASVYSVWVEFIQLS-----LDHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAI 82 (100)
Q Consensus 8 ~~~s~r~~~~~~~~~~~~~~~~-----~~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~ai 82 (100)
..+++++.....+.+..+.... ...++|+|+.|+|++ .+++.+.+++.+++... ...+|++..|.++||++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~-~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~ai 79 (389)
T PRK08068 3 FEPSELLKQLPKQFFASLVAKVNKKVAEGHDVINLGQGNPDQ-PTPEHIVEALQEAAENP--ANHKYSPFRGYPFLKEAA 79 (389)
T ss_pred CchhhHhhhcCccHHHHHHHHHHHHHhcCCCeEEecCCCCCC-CCCHHHHHHHHHHHhCC--CCCCCCCCCCCHHHHHHH
Confidence 3567777777776666665532 235789999999998 77777899998887654 357899999999999999
Q ss_pred HHHHhhhhCCCCCCCCC
Q psy782 83 AKLYSSLIERPLLPHQL 99 (100)
Q Consensus 83 a~~~~~~~g~~~~~~~e 99 (100)
|+++.+.+|++++++++
T Consensus 80 a~~~~~~~g~~~~~~~~ 96 (389)
T PRK08068 80 ADFYKREYGVTLDPETE 96 (389)
T ss_pred HHHHHHHhCCCCCCCcc
Confidence 99998888988888633
No 15
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=99.25 E-value=6.5e-11 Score=83.66 Aligned_cols=88 Identities=23% Similarity=0.281 Sum_probs=69.4
Q ss_pred CChhhcccchhHHHHHHHhh-----cCCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHH
Q psy782 10 LPPRFEASVYSVWVEFIQLS-----LDHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAK 84 (100)
Q Consensus 10 ~s~r~~~~~~~~~~~~~~~~-----~~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~ 84 (100)
+++++.....+.+..+.+.+ ...++|+|+.|+|++ .+++.+.+++.+++... ..++|++..|+++||++||+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~lr~aia~ 80 (385)
T PRK09276 4 LADRIKNLPPYLFAEIDKKKAEKIARGVDVISLGIGDPDL-PTPDHIIEAMCKAVEDP--ENHQYPSYEGMLEFRKAVAD 80 (385)
T ss_pred hhhHhhhCCccHHHHHHHHHHHHHhcCCCEEEecCCCCCC-CCCHHHHHHHHHHHhCC--CCCCCCCCCCcHHHHHHHHH
Confidence 56777777776665554432 235789999999999 88889999999888653 35789999999999999999
Q ss_pred HHhhhhCCCCCCCCCC
Q psy782 85 LYSSLIERPLLPHQLV 100 (100)
Q Consensus 85 ~~~~~~g~~~~~~~eI 100 (100)
++.+.+|++++++++|
T Consensus 81 ~~~~~~g~~~~~~~~i 96 (385)
T PRK09276 81 WYKRRFGVELDPETEV 96 (385)
T ss_pred HHHHHhCCCCCCCCcE
Confidence 9998889888876333
No 16
>PRK12414 putative aminotransferase; Provisional
Probab=99.24 E-value=5.9e-11 Score=84.08 Aligned_cols=83 Identities=24% Similarity=0.337 Sum_probs=68.4
Q ss_pred ChhhcccchhHHHHHHHhhcCCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhh
Q psy782 11 PPRFEASVYSVWVEFIQLSLDHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLI 90 (100)
Q Consensus 11 s~r~~~~~~~~~~~~~~~~~~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~ 90 (100)
..++..+..+++..+.+.....++|+|+.|.|++ +|++.+.+++.+++... ..+|++..|+++||++|++++++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~-~~~~~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~l~~~~ 83 (384)
T PRK12414 8 RSKLPDVGTTIFTVIGQLAAQHDALNLSQGAPNF-APDPALVEGVARAMRDG---HNQYAPMAGIAALREALAEKTERLY 83 (384)
T ss_pred HHhcccCCccHHHHHHHHHHhCCeEEcCCCCCCC-CCCHHHHHHHHHHHHhC---CCCcCCCCCcHHHHHHHHHHHHHHh
Confidence 3455666666666666666667899999999999 88899999999888754 5789999999999999999999888
Q ss_pred CCCCCCC
Q psy782 91 ERPLLPH 97 (100)
Q Consensus 91 g~~~~~~ 97 (100)
|+.++++
T Consensus 84 g~~~~~~ 90 (384)
T PRK12414 84 GARYDPA 90 (384)
T ss_pred CCCCCCC
Confidence 9887763
No 17
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=99.23 E-value=5.9e-11 Score=84.27 Aligned_cols=84 Identities=26% Similarity=0.362 Sum_probs=67.1
Q ss_pred hhhcccchhHHHHHHHhhc------CCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHH
Q psy782 12 PRFEASVYSVWVEFIQLSL------DHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKL 85 (100)
Q Consensus 12 ~r~~~~~~~~~~~~~~~~~------~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~ 85 (100)
+++..+..+.+..+.+.+. +.++|+|++|+|++ .|++.+.+++.+.+. . ..+|++..|.++||++||++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~-~~~~~~~~~~~~~~~-~---~~~Y~~~~G~~~lr~~ia~~ 77 (396)
T PRK09147 3 PRLDRLQPYPFEKLRALFAGVTPPADLPPISLSIGEPKH-PTPAFIKDALAANLD-G---LASYPTTAGLPALREAIAAW 77 (396)
T ss_pred chhhcCCcchHHHHHHHHHhhhhccCCCeEecCCCCCCC-CCCHHHHHHHHHHhh-h---hcCCCCCCCCHHHHHHHHHH
Confidence 3556666667766666543 34799999999999 888999999988764 3 67899999999999999999
Q ss_pred HhhhhCCC-CCCCCCC
Q psy782 86 YSSLIERP-LLPHQLV 100 (100)
Q Consensus 86 ~~~~~g~~-~~~~~eI 100 (100)
+.+.+|++ ++++++|
T Consensus 78 ~~~~~g~~~~~~~~~i 93 (396)
T PRK09147 78 LERRYGLPALDPATQV 93 (396)
T ss_pred HHHHhCCCcCCccceE
Confidence 99888988 8885343
No 18
>PRK05942 aspartate aminotransferase; Provisional
Probab=99.23 E-value=8.5e-11 Score=83.48 Aligned_cols=87 Identities=24% Similarity=0.243 Sum_probs=65.6
Q ss_pred CCChhhcccchhHHHHHHHhh-----cCCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHH
Q psy782 9 ALPPRFEASVYSVWVEFIQLS-----LDHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIA 83 (100)
Q Consensus 9 ~~s~r~~~~~~~~~~~~~~~~-----~~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia 83 (100)
.+++++..+..+.+..+.+.+ .+.++|+|+.|+|++ ++|..+.+++.+.+... ..++|+++.|.++||++||
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~p~~-~~p~~~~~~~~~~~~~~--~~~~Y~~~~G~~~lr~aia 83 (394)
T PRK05942 7 TPADRLQALPPYVFARLDELKARAREQGLDLIDLGMGNPDG-AAPQPVIEAAIAALADP--QNHGYPPFEGTASFRQAIT 83 (394)
T ss_pred chhhhhccCCCcHHHHHHHHHHHHHhcCCCeEEcCCCCCCC-CCCHHHHHHHHHHHhCC--CCccCCCCCCCHHHHHHHH
Confidence 456777776666554444322 235689999999998 77777777776666543 3578999999999999999
Q ss_pred HHHhhhhCCCCCCCC
Q psy782 84 KLYSSLIERPLLPHQ 98 (100)
Q Consensus 84 ~~~~~~~g~~~~~~~ 98 (100)
+++.+.+|+.+++++
T Consensus 84 ~~~~~~~~~~~~~~~ 98 (394)
T PRK05942 84 DWYHRRYGVELDPDS 98 (394)
T ss_pred HHHHHHHCCCcCCCC
Confidence 999988898888874
No 19
>PRK05764 aspartate aminotransferase; Provisional
Probab=99.22 E-value=4.5e-11 Score=84.57 Aligned_cols=85 Identities=22% Similarity=0.302 Sum_probs=71.7
Q ss_pred CCChhhcccchhHHHHHHHhhc-----CCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHH
Q psy782 9 ALPPRFEASVYSVWVEFIQLSL-----DHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIA 83 (100)
Q Consensus 9 ~~s~r~~~~~~~~~~~~~~~~~-----~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia 83 (100)
.++.|+..+..+.+..+...+. ..++++|+.|.|++ .+++.+.+++.+++... ..+|++..|.+.||++||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~---~~~Y~~~~g~~~lr~~ia 78 (393)
T PRK05764 3 KLSKRVSRVTPSATLAVTAKAKELKAQGRDVISLGAGEPDF-DTPEHIKEAAIEALDDG---KTKYTPAAGIPELREAIA 78 (393)
T ss_pred chhhhhhhcCchHHHHHHHHHHHHHhccCCEEEeCCCCCCC-CCCHHHHHHHHHHHhcC---CCCcCCCCChHHHHHHHH
Confidence 4789999988888877766543 35789999999999 77889999999888765 567999999999999999
Q ss_pred HHHhhhhCCCCCCC
Q psy782 84 KLYSSLIERPLLPH 97 (100)
Q Consensus 84 ~~~~~~~g~~~~~~ 97 (100)
+++.+.+|+.++++
T Consensus 79 ~~~~~~~~~~~~~~ 92 (393)
T PRK05764 79 AKLKRDNGLDYDPS 92 (393)
T ss_pred HHHHHHhCCCCCHH
Confidence 99988888777776
No 20
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=99.21 E-value=1.3e-10 Score=82.17 Aligned_cols=88 Identities=26% Similarity=0.293 Sum_probs=67.2
Q ss_pred CChhhcccchhHHHHHHHhh-----cCCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHH
Q psy782 10 LPPRFEASVYSVWVEFIQLS-----LDHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAK 84 (100)
Q Consensus 10 ~s~r~~~~~~~~~~~~~~~~-----~~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~ 84 (100)
++.|+.....+.+..+.+.+ .+.++++|+.|.|++ .+++.+.+++.+++... ..++|+++.|+++||++||+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~lr~~ia~ 78 (383)
T TIGR03540 2 LADRIENLPPYLFAEIDKKKAEKKAEGVDVISLGIGDPDL-PTPKHIVEALCKAAENP--ENHRYPSYEGMLAYRQAVAD 78 (383)
T ss_pred cchhhccCChhHHHHHHHHHHHHHhcCCCeEEeCCCCCCC-CCCHHHHHHHHHHHhCC--CCCCCCCCCCCHHHHHHHHH
Confidence 34555555555555554433 235789999999999 77889999998887654 35789999999999999999
Q ss_pred HHhhhhCCCCCCCCCC
Q psy782 85 LYSSLIERPLLPHQLV 100 (100)
Q Consensus 85 ~~~~~~g~~~~~~~eI 100 (100)
++.+.+|+.++++++|
T Consensus 79 ~~~~~~~~~~~~~~~v 94 (383)
T TIGR03540 79 WYKRRFGVELDPETEV 94 (383)
T ss_pred HHHHhhCCCCCCCCeE
Confidence 9998889888776343
No 21
>PRK07683 aminotransferase A; Validated
Probab=99.21 E-value=1.1e-10 Score=82.81 Aligned_cols=86 Identities=22% Similarity=0.312 Sum_probs=71.7
Q ss_pred ChhhcccchhHHHHHHHhhc-CCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhh
Q psy782 11 PPRFEASVYSVWVEFIQLSL-DHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSL 89 (100)
Q Consensus 11 s~r~~~~~~~~~~~~~~~~~-~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~ 89 (100)
+.++..+..+.+..+..... ..++|+|+.|.|++ ++++.+.+++.+++... ..+|++..|.++||++||+++.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~-~~~~~~~~a~~~~~~~~---~~~Y~~~~g~~~lr~~ia~~l~~~ 81 (387)
T PRK07683 6 NPRVKDIQISGIRQFSNMVQNYDNLISLTIGQPDF-PTPSHVKEAAKRAITEN---YTSYTHNAGLLELRKAACNFVKDK 81 (387)
T ss_pred hHHHHhCCccHHHHHHHHHHhcCCeEEecCCCCCC-CCCHHHHHHHHHHHhcC---CCCCCCCCCCHHHHHHHHHHHHHH
Confidence 56778778888877777653 46789999999998 77889999999988765 678999999999999999999887
Q ss_pred hCCCCCCCCCC
Q psy782 90 IERPLLPHQLV 100 (100)
Q Consensus 90 ~g~~~~~~~eI 100 (100)
+|+.++++++|
T Consensus 82 ~g~~~~~~~~I 92 (387)
T PRK07683 82 YDLHYSPESEI 92 (387)
T ss_pred hCCCCCCCCcE
Confidence 89988886343
No 22
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.19 E-value=5.4e-11 Score=85.07 Aligned_cols=66 Identities=21% Similarity=0.284 Sum_probs=58.0
Q ss_pred CCCceecCCCCCC----CCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCCCCCCCCCC
Q psy782 31 DHKPLNLGQGFPD----YESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIERPLLPHQLV 100 (100)
Q Consensus 31 ~~~~i~l~~G~P~----~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~eI 100 (100)
..++|+|++|+|+ + .+|+.+.+++.++++.. ..++|++..|.++||++||+++.+.+|+.++++ +|
T Consensus 31 ~~~~i~l~~G~p~~~~~~-~~p~~~~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~-~I 100 (409)
T PLN00143 31 HRLAISFGFGDPSCFECF-RTTNIAEDAIVEAVRSA--KFNSYAPTGGILPARRAIADYLSNDLPYQLSPD-DV 100 (409)
T ss_pred CCceeeCCCCCCCCCCCC-CCCHHHHHHHHHHHhCc--CCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHh-hE
Confidence 4689999999999 7 88899999999988765 357899999999999999999998889888887 54
No 23
>PRK08363 alanine aminotransferase; Validated
Probab=99.19 E-value=7.2e-11 Score=83.90 Aligned_cols=85 Identities=21% Similarity=0.227 Sum_probs=65.5
Q ss_pred CChhhcccchhHHHHHHHhh-----cCCCceecCCCCC---CCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHH
Q psy782 10 LPPRFEASVYSVWVEFIQLS-----LDHKPLNLGQGFP---DYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQA 81 (100)
Q Consensus 10 ~s~r~~~~~~~~~~~~~~~~-----~~~~~i~l~~G~P---~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~a 81 (100)
++.++..+. +.++.+.... ...++|+|+.|.| ++ .|++.+.+++.++++.. ...|++..|.++||++
T Consensus 4 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~-~p~~~~~~~~~~~~~~~---~~~Y~~~~g~~~lr~~ 78 (398)
T PRK08363 4 ASERAMGVE-YAIRDVVLPARELEKKGIKVIRLNIGDPVKFDF-QPPEHMKEAYCRAIKEG---HNYYGPSEGLPELREA 78 (398)
T ss_pred hhHHHHhcc-HHHHHHHHHHHHHHhcCCCeEEEeCCCCCcCCC-CCCHHHHHHHHHHHHcC---CCCCCCCCCcHHHHHH
Confidence 456666554 3344443322 2347999999999 56 78899999999988765 5689999999999999
Q ss_pred HHHHHhhhhCCCCCCCCCC
Q psy782 82 IAKLYSSLIERPLLPHQLV 100 (100)
Q Consensus 82 ia~~~~~~~g~~~~~~~eI 100 (100)
||+++.+.+|+.++++ +|
T Consensus 79 ia~~~~~~~g~~~~~~-~i 96 (398)
T PRK08363 79 IVKREKRKNGVDITPD-DV 96 (398)
T ss_pred HHHHHHHhcCCCCChh-hE
Confidence 9999998889888887 54
No 24
>PRK09082 methionine aminotransferase; Validated
Probab=99.18 E-value=1.8e-10 Score=81.60 Aligned_cols=86 Identities=26% Similarity=0.358 Sum_probs=72.3
Q ss_pred CChhhcccchhHHHHHHHhhcCCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhh
Q psy782 10 LPPRFEASVYSVWVEFIQLSLDHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSL 89 (100)
Q Consensus 10 ~s~r~~~~~~~~~~~~~~~~~~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~ 89 (100)
++.|+..+..+.+..+....++.++|+|+.|.|++ .+++.+.+++.+++... .++|++..|.++||+++++++.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~-~~~~~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~~~a~~l~~~ 83 (386)
T PRK09082 8 PQSKLPNVGTTIFTVMSALAAEHGAINLSQGFPDF-DGPPYLVEALAYAMAAG---HNQYPPMTGVAALREAIAAKTARL 83 (386)
T ss_pred hhhHhhccCccHHHHHHHHHhhCCEEEecCCCCCC-CCCHHHHHHHHHHHHcC---CCCCCCCCCcHHHHHHHHHHHHHH
Confidence 56777778888888777777777899999999999 77788999999888765 678999999999999999999988
Q ss_pred hCCCCCCCCC
Q psy782 90 IERPLLPHQL 99 (100)
Q Consensus 90 ~g~~~~~~~e 99 (100)
+|+.++++.+
T Consensus 84 ~~~~~~~~~~ 93 (386)
T PRK09082 84 YGRQYDADSE 93 (386)
T ss_pred hCCCCCCCCc
Confidence 8988776533
No 25
>PRK07777 aminotransferase; Validated
Probab=99.17 E-value=2.4e-10 Score=80.93 Aligned_cols=82 Identities=29% Similarity=0.457 Sum_probs=68.7
Q ss_pred hhhcccchhHHHHHHHhhcCCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhC
Q psy782 12 PRFEASVYSVWVEFIQLSLDHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIE 91 (100)
Q Consensus 12 ~r~~~~~~~~~~~~~~~~~~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g 91 (100)
.++..+..+.+..+.+.+...++|+|++|.|++ ..|+.+.+++.+++... ..+|++..|.++||++|++++.+.+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~-~~~~~~~~~~~~~~~~~---~~~Y~~~~g~~~lr~~ia~~~~~~~g 79 (387)
T PRK07777 4 SRLRPFGTTIFAEMSALAVRTGAVNLGQGFPDE-DGPPEMLEAAQEAIAGG---VNQYPPGPGIPELRAAIAAQRRRRYG 79 (387)
T ss_pred hhhhhcCccHHHHHHHHHhhCCeEEccCCCCCC-CCCHHHHHHHHHHHhcC---CCCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 456677777888888887777899999999999 55666788888877654 57899999999999999999988889
Q ss_pred CCCCCC
Q psy782 92 RPLLPH 97 (100)
Q Consensus 92 ~~~~~~ 97 (100)
+.++++
T Consensus 80 ~~~~~~ 85 (387)
T PRK07777 80 LEYDPD 85 (387)
T ss_pred CCCCCC
Confidence 888775
No 26
>PRK08361 aspartate aminotransferase; Provisional
Probab=99.16 E-value=2.7e-10 Score=80.78 Aligned_cols=87 Identities=22% Similarity=0.303 Sum_probs=71.6
Q ss_pred CCChhhcccchhHHHHHHHhhc-CCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHh
Q psy782 9 ALPPRFEASVYSVWVEFIQLSL-DHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYS 87 (100)
Q Consensus 9 ~~s~r~~~~~~~~~~~~~~~~~-~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~ 87 (100)
.++.|+..+....+..+.+... ..++|+|+.|.|++ .+++.+.+++.+++... ..+|++..|.++||++||+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~-~~~~~~~~~~~~~~~~~---~~~Y~~~~g~~~lr~~ia~~~~ 84 (391)
T PRK08361 9 FIAGRINLIQRSKIRELFERASKMENVISLGIGEPDF-DTPKNIKEAAKRALDEG---WTHYTPNAGIPELREAIAEYYK 84 (391)
T ss_pred chhHHHHhCCccHHHHHHHHHHhhcCeEEcCCCCCCC-CCCHHHHHHHHHHHhcC---CCCCCCCCCcHHHHHHHHHHHH
Confidence 3577777777777777766543 35789999999999 77899999999988765 6789999999999999999998
Q ss_pred hhhCCCCCCCCCC
Q psy782 88 SLIERPLLPHQLV 100 (100)
Q Consensus 88 ~~~g~~~~~~~eI 100 (100)
+.+|+.++++ +|
T Consensus 85 ~~~g~~~~~~-~i 96 (391)
T PRK08361 85 KFYGVDVDVD-NV 96 (391)
T ss_pred HHhCCCCCcc-cE
Confidence 8889888887 54
No 27
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.16 E-value=2.3e-10 Score=81.20 Aligned_cols=80 Identities=23% Similarity=0.342 Sum_probs=63.9
Q ss_pred hhcccchhHHHHHHHhhc------CCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHH
Q psy782 13 RFEASVYSVWVEFIQLSL------DHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLY 86 (100)
Q Consensus 13 r~~~~~~~~~~~~~~~~~------~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~ 86 (100)
++..+..+.+..+.+++. +.++|+|++|+|++ .||+.+.+++.+.+. . ..+|+++.|.++||++||+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~-~~~~~~~~a~~~~~~-~---~~~Y~~~~G~~~lr~aia~~~ 77 (393)
T TIGR03538 3 NLSRLQPYPFEKLAALLAGVTPPASKPPIALSIGEPKH-PTPAFVLEALRENLH-G---LSTYPTTKGLPELRQAIARWL 77 (393)
T ss_pred hhhhCCccHHHHHHHHHHhhhhhcCCCeEEecCCCCCC-CCCHHHHHHHHHHhh-c---cCCCCCCCCCHHHHHHHHHHH
Confidence 344455566666666543 35799999999999 889999999988764 3 678999999999999999999
Q ss_pred hhhhCCC--CCCC
Q psy782 87 SSLIERP--LLPH 97 (100)
Q Consensus 87 ~~~~g~~--~~~~ 97 (100)
.+.+|++ ++++
T Consensus 78 ~~~~~~~~~~~~~ 90 (393)
T TIGR03538 78 ERRFDLPTGVDPE 90 (393)
T ss_pred HHhhCCcccCCCC
Confidence 9988886 6775
No 28
>PRK06855 aminotransferase; Validated
Probab=99.16 E-value=9.2e-11 Score=84.50 Aligned_cols=65 Identities=15% Similarity=0.078 Sum_probs=56.8
Q ss_pred CCceecCCCCC---CCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCCCCCCCCCC
Q psy782 32 HKPLNLGQGFP---DYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIERPLLPHQLV 100 (100)
Q Consensus 32 ~~~i~l~~G~P---~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~eI 100 (100)
.++++|++|+| ++ .+|+.+.+++.++++.. ..++|++..|.++||++||+++++.+|+.++++ +|
T Consensus 32 ~~~~~~~~G~p~~~~~-~~p~~~~~a~~~~~~~~--~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~-~I 99 (433)
T PRK06855 32 VKITWENIGDPIAKGE-KIPDWMKEIVAELVMDD--KSYGYCPTKGVLETREFLAELNNKRGGAQITPD-DI 99 (433)
T ss_pred ccccccccCCCcccCC-CCCHHHHHHHHHHhhcC--CCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHh-HE
Confidence 46899999999 56 88899999999887654 367999999999999999999999889999887 54
No 29
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=99.16 E-value=1.1e-10 Score=83.50 Aligned_cols=86 Identities=19% Similarity=0.228 Sum_probs=65.0
Q ss_pred hhhcccchhHHHHHHHhhcCCCceecCCCCCCCC---CchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhh
Q psy782 12 PRFEASVYSVWVEFIQLSLDHKPLNLGQGFPDYE---SAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSS 88 (100)
Q Consensus 12 ~r~~~~~~~~~~~~~~~~~~~~~i~l~~G~P~~~---~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~ 88 (100)
.|+.+...+.+.++.+.....++|+|+.|.|+.+ +|++.+.+++.++++.. ...+|+++.|.++||++||+++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~--~~~~Y~~~~G~~~Lr~aia~~~~~ 90 (412)
T PTZ00433 13 GRVFNPLRTVTDNAKPSPSPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQ--ECNGYPPTVGSPEAREAVATYWRN 90 (412)
T ss_pred HhhhccHHHHHHhhccCCCCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcC--CCCCCCCCCCcHHHHHHHHHHHHh
Confidence 3444444555666554456678999999999731 68899999999988763 367899999999999999999987
Q ss_pred hh------CCCCCCCCCC
Q psy782 89 LI------ERPLLPHQLV 100 (100)
Q Consensus 89 ~~------g~~~~~~~eI 100 (100)
.+ |..++++ +|
T Consensus 91 ~~~~~~~~~~~~~~~-~i 107 (412)
T PTZ00433 91 SFVHKESLKSTIKKD-NV 107 (412)
T ss_pred hccccccccCCCChh-hE
Confidence 54 4567776 53
No 30
>PRK07550 hypothetical protein; Provisional
Probab=99.16 E-value=2.1e-10 Score=81.22 Aligned_cols=87 Identities=28% Similarity=0.342 Sum_probs=69.8
Q ss_pred CChhhcccchhHHHHHHHhhc-----CCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHH
Q psy782 10 LPPRFEASVYSVWVEFIQLSL-----DHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAK 84 (100)
Q Consensus 10 ~s~r~~~~~~~~~~~~~~~~~-----~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~ 84 (100)
+++|+....+..+..+.+... ..+.|+|+.|+|+. ++++.+.+++.+++... ...+|++..|.++||++||+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~lr~~ia~ 78 (386)
T PRK07550 2 LNPLIAALFPPPIPEVRAWLAGYDGADGPLIDLSQAVPGY-PPPPELLRALAEAAADP--AAHLYGPVEGLPELREAYAA 78 (386)
T ss_pred cchhhhhcCChHHHHHHHHHHHHhhcCCCeEEeCCCCCCC-CCCHHHHHHHHHHHhCc--CCcCCCCCCCCHHHHHHHHH
Confidence 456777666667766666432 34689999999999 88899999999887543 35789999999999999999
Q ss_pred HHhhhhCCCCCCCCCC
Q psy782 85 LYSSLIERPLLPHQLV 100 (100)
Q Consensus 85 ~~~~~~g~~~~~~~eI 100 (100)
++.+.+|+.++++ +|
T Consensus 79 ~~~~~~g~~~~~~-~i 93 (386)
T PRK07550 79 HYSRLYGAAISPE-QV 93 (386)
T ss_pred HHHHHhCCCCCcc-eE
Confidence 9998889888887 54
No 31
>PLN02656 tyrosine transaminase
Probab=99.15 E-value=1.4e-10 Score=82.96 Aligned_cols=66 Identities=24% Similarity=0.345 Sum_probs=57.7
Q ss_pred CCCceecCCCCCC----CCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCCCCCCCCCC
Q psy782 31 DHKPLNLGQGFPD----YESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIERPLLPHQLV 100 (100)
Q Consensus 31 ~~~~i~l~~G~P~----~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~eI 100 (100)
..++|+|++|+|+ + .||+.+.+++.+++... ..++|++..|.++||++||+++.+.+|+.++++ +|
T Consensus 30 ~~~~i~l~~G~p~~~~~~-~~~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~-~i 99 (409)
T PLN02656 30 GKRVISLGMGDPTAYSCF-HTTHVAQEAVVDALQSN--KFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLD-DV 99 (409)
T ss_pred CCeeeecCCCCCCcCCCC-CCCHHHHHHHHHHHhcC--CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcc-cE
Confidence 3579999999998 7 78899999999988765 367899999999999999999998889888887 54
No 32
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=99.15 E-value=2.5e-10 Score=81.04 Aligned_cols=87 Identities=22% Similarity=0.234 Sum_probs=71.4
Q ss_pred CChhhcccchhHHHHHHHhh-cCCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhh
Q psy782 10 LPPRFEASVYSVWVEFIQLS-LDHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSS 88 (100)
Q Consensus 10 ~s~r~~~~~~~~~~~~~~~~-~~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~ 88 (100)
+++|+.....+.++.+.+.. ...++|+|+.|+|++ .+++.+.+++.+++... ..+|++..|.++||++||+++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~-~~~~~~~~~~~~~~~~~---~~~Y~~~~g~~~lr~~ia~~~~~ 82 (391)
T PRK07309 7 FNKQLDKIEVSLIRQFDQSISDIPGILKLTLGEPDF-TTPDHVKEAAKRAIDAN---QSHYTGMAGLLELRQAAADFVKE 82 (391)
T ss_pred HHhhhhhcCccHHHHHHHHHHhcCCeEEcCCCCCCC-CCCHHHHHHHHHHHhcC---CCCCCCCCCcHHHHHHHHHHHHH
Confidence 47778777777888887743 346899999999999 88889999999888754 56799999999999999999998
Q ss_pred hhCCCCCCCCCC
Q psy782 89 LIERPLLPHQLV 100 (100)
Q Consensus 89 ~~g~~~~~~~eI 100 (100)
.+|+.++++++|
T Consensus 83 ~~~~~~~~~~~i 94 (391)
T PRK07309 83 KYNLDYAPENEI 94 (391)
T ss_pred HhCCCCCCCCcE
Confidence 889887764344
No 33
>PRK09148 aminotransferase; Validated
Probab=99.15 E-value=3.1e-10 Score=81.06 Aligned_cols=87 Identities=24% Similarity=0.345 Sum_probs=67.2
Q ss_pred ChhhcccchhHHHHHHHhh-----cCCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHH
Q psy782 11 PPRFEASVYSVWVEFIQLS-----LDHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKL 85 (100)
Q Consensus 11 s~r~~~~~~~~~~~~~~~~-----~~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~ 85 (100)
++++..+..+.+..+.+.. ...++|+|+.|+|++ .+++.+.+++.+++... ..++|++..|.++||++||++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~-~~~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~ 80 (405)
T PRK09148 4 FHRIRRLPPYVFEQVNRLKAAARAAGADIIDLGMGNPDL-PTPQHIVDKLCETAQDP--RTHRYSASKGIPGLRRAQAAY 80 (405)
T ss_pred hhhhhcCCccHHHHHHHHHHHHHhcCCCeEEcCCCCCCC-CCCHHHHHHHHHHHcCc--ccCCCCCCCCCHHHHHHHHHH
Confidence 4556666666666665433 235789999999998 77888888888877543 357899999999999999999
Q ss_pred HhhhhCCCCCCCCCC
Q psy782 86 YSSLIERPLLPHQLV 100 (100)
Q Consensus 86 ~~~~~g~~~~~~~eI 100 (100)
+.+.+|+.++++++|
T Consensus 81 ~~~~~g~~~~~~~~I 95 (405)
T PRK09148 81 YARRFGVKLNPDTQV 95 (405)
T ss_pred HHHHhCCCCCCCCcE
Confidence 988789888886343
No 34
>PRK07681 aspartate aminotransferase; Provisional
Probab=99.15 E-value=2.8e-10 Score=80.95 Aligned_cols=88 Identities=23% Similarity=0.278 Sum_probs=68.8
Q ss_pred CCChhhcccchhHHHHHHHhh-----cCCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHH
Q psy782 9 ALPPRFEASVYSVWVEFIQLS-----LDHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIA 83 (100)
Q Consensus 9 ~~s~r~~~~~~~~~~~~~~~~-----~~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia 83 (100)
.+++|+.....+.+..+...+ ...++|+|+.|.|++ .|++.+.+++.+++... ...+|+ ..|.++||++||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~-~~~~~~~~~~~~~~~~~--~~~~y~-~~G~~~lr~aia 79 (399)
T PRK07681 4 TLATRMKAFQSSIFSELGAYKKEKIAAGHKMIDLSIGNPDM-PPADFVREEMVHTANQK--ESYGYT-LSGIQEFHEAVT 79 (399)
T ss_pred cHhHHHhhcCccHHHHHHHHHHHhhhcCCCeEEeCCCCCCC-CCCHHHHHHHHHHHhcc--ccCCCC-CCCcHHHHHHHH
Confidence 457788777777777766543 235789999999999 88889999999887653 245565 589999999999
Q ss_pred HHHhhhhCCCCCCCCCC
Q psy782 84 KLYSSLIERPLLPHQLV 100 (100)
Q Consensus 84 ~~~~~~~g~~~~~~~eI 100 (100)
+++.+.+|+.++++++|
T Consensus 80 ~~~~~~~g~~~~~~~~I 96 (399)
T PRK07681 80 EYYNNTHNVILNADKEV 96 (399)
T ss_pred HHHHHHhCCCCCCCCeE
Confidence 99998889999883254
No 35
>PRK07682 hypothetical protein; Validated
Probab=99.14 E-value=4e-10 Score=79.51 Aligned_cols=78 Identities=23% Similarity=0.306 Sum_probs=62.4
Q ss_pred hhHHHHHHHhhcC-CCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCCCCCCC
Q psy782 19 YSVWVEFIQLSLD-HKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIERPLLPH 97 (100)
Q Consensus 19 ~~~~~~~~~~~~~-~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~ 97 (100)
...+..+.+.+.. .++|+|+.|+|++ .+++.+.+++.+++... .++|++..|.++||++||+++.+.+|+.++++
T Consensus 6 ~~~~~~~~~~~~~~~~~i~l~~~~~~~-~~~~~~~~~~~~~~~~~---~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~ 81 (378)
T PRK07682 6 PSGIRKFFDLAANMEGVISLGVGEPDF-VTPWNVREASIRSLEQG---YTSYTANAGLLELRQEIAKYLKKRFAVSYDPN 81 (378)
T ss_pred ccHHHHHHHHHHhcCCeEEeCCCCCCC-CCCHHHHHHHHHHHhcC---CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCC
Confidence 3445555554433 4799999999999 77888889988887654 67899999999999999999999889988876
Q ss_pred CCC
Q psy782 98 QLV 100 (100)
Q Consensus 98 ~eI 100 (100)
++|
T Consensus 82 ~~i 84 (378)
T PRK07682 82 DEI 84 (378)
T ss_pred CcE
Confidence 444
No 36
>PRK05957 aspartate aminotransferase; Provisional
Probab=99.13 E-value=4.3e-10 Score=79.86 Aligned_cols=90 Identities=20% Similarity=0.234 Sum_probs=72.0
Q ss_pred CCCChhhcccchhHHHHHHHhhc-CCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHH
Q psy782 8 FALPPRFEASVYSVWVEFIQLSL-DHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLY 86 (100)
Q Consensus 8 ~~~s~r~~~~~~~~~~~~~~~~~-~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~ 86 (100)
+++++|+.....+.+..+....+ ..++++|+.|.|++ +||+.+.+++.+.+... ....|++..|.++||+++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~-~~~~~~~~a~~~~~~~~--~~~~Y~~~~G~~~lr~~~~~~l 78 (389)
T PRK05957 2 TQFTSRMDAVQSPIIPVVGQLIRENPGTISLGQGVVSY-PPPPEAIEALNNFLANP--ENHKYQAVQGIPPLLEAITQKL 78 (389)
T ss_pred chhhHHHHhcCCcHHHHHHHHHHhCCCeEEccCCCCCC-CCCHHHHHHHHHHHhCC--CCCCCCCCCCCHHHHHHHHHHH
Confidence 35688888888888876666543 35789999999999 88899999998887644 3468999999999999999999
Q ss_pred hhhhCCCCCCCCCC
Q psy782 87 SSLIERPLLPHQLV 100 (100)
Q Consensus 87 ~~~~g~~~~~~~eI 100 (100)
++.+|+.++++++|
T Consensus 79 ~~~~g~~~~~~~~i 92 (389)
T PRK05957 79 QQDNGIELNNEQAI 92 (389)
T ss_pred HHHhCCCCCCCCeE
Confidence 98889887733243
No 37
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=99.13 E-value=4.1e-10 Score=79.13 Aligned_cols=86 Identities=20% Similarity=0.232 Sum_probs=68.8
Q ss_pred CCCChhhcccchhHHHHHHHhh--cCCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHH
Q psy782 8 FALPPRFEASVYSVWVEFIQLS--LDHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKL 85 (100)
Q Consensus 8 ~~~s~r~~~~~~~~~~~~~~~~--~~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~ 85 (100)
|.++.|+.......+..+...+ ...++|+|+.|+|++ ++++.+.+++.+... ..+|+++.|.++||++||++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~-~~~~~~~~~~~~~~~-----~~~Y~~~~G~~~lr~~ia~~ 74 (364)
T PRK07865 1 MPVSARLPDFPWDTLAPAKATAAAHPDGIVDLSVGTPVD-PVPPVIQEALAAAAD-----APGYPTTAGTPELREAIVGW 74 (364)
T ss_pred CCccccCCCccHHHHHHHHHHHHhcCCCEEEcCCCCCCC-CCCHHHHHHHHHHHh-----hCCCCCccCCHHHHHHHHHH
Confidence 4578888888887777765543 234689999999988 767888888876542 34899999999999999999
Q ss_pred HhhhhCCC-CCCCCCC
Q psy782 86 YSSLIERP-LLPHQLV 100 (100)
Q Consensus 86 ~~~~~g~~-~~~~~eI 100 (100)
+.+.+|++ ++++ +|
T Consensus 75 l~~~~~~~~~~~~-~I 89 (364)
T PRK07865 75 LARRRGVTGLDPA-AV 89 (364)
T ss_pred HHHHcCCCCCCcc-cE
Confidence 99988987 8887 54
No 38
>PLN02187 rooty/superroot1
Probab=99.10 E-value=5.1e-10 Score=81.38 Aligned_cols=65 Identities=22% Similarity=0.283 Sum_probs=56.3
Q ss_pred CCceecCCCCCC----CCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCCCCCCCCCC
Q psy782 32 HKPLNLGQGFPD----YESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIERPLLPHQLV 100 (100)
Q Consensus 32 ~~~i~l~~G~P~----~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~eI 100 (100)
.++|+|++|+|+ + .+|+++.+++.++++.+ ..++|++..|.++||++||+++.+.+|+.++++ +|
T Consensus 66 ~~vi~l~~Gdp~~~p~~-~~~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~-~I 134 (462)
T PLN02187 66 KTILPLGHGDPSVYPCF-RTCIEAEDAVVDVLRSG--KGNSYGPGAGILPARRAVADYMNRDLPHKLTPE-DI 134 (462)
T ss_pred CCeEECCCCCCCCCCCC-CCCHHHHHHHHHHHhCC--CCCCCCCCCChHHHHHHHHHHHHHhcCCCCCcc-cE
Confidence 479999999998 5 56688999999988765 357899999999999999999998889889988 54
No 39
>PRK08636 aspartate aminotransferase; Provisional
Probab=99.08 E-value=9e-10 Score=78.53 Aligned_cols=86 Identities=21% Similarity=0.298 Sum_probs=64.2
Q ss_pred hhhcccchhHHHHHHHhhc-----CCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHH
Q psy782 12 PRFEASVYSVWVEFIQLSL-----DHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLY 86 (100)
Q Consensus 12 ~r~~~~~~~~~~~~~~~~~-----~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~ 86 (100)
+++..+....+..+.+.+. ..++++|+.|.|+. .+|..+.+++.+.+... ..++|++..|.++||++||+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~p~~-~~~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~lR~~ia~~l 84 (403)
T PRK08636 8 NKIKRLPKYVFAEVNELKMAARRAGEDIIDFSMGNPDG-PTPQHIIDKLCESAQKP--KTHGYSVSKGIYKLRLAICNWY 84 (403)
T ss_pred HHHHhCCccHHHHHHHHHHHHHhcCCCEEEcCCcCCCC-CCCHHHHHHHHHHhcCC--ccCCCCCCCCCHHHHHHHHHHH
Confidence 4455556666655555432 35789999999998 66776777776665443 3689999999999999999999
Q ss_pred hhhhCCCCCCCCCC
Q psy782 87 SSLIERPLLPHQLV 100 (100)
Q Consensus 87 ~~~~g~~~~~~~eI 100 (100)
++.+|+.++++++|
T Consensus 85 ~~~~~~~~~~~~~I 98 (403)
T PRK08636 85 KRKYNVDLDPETEV 98 (403)
T ss_pred HHHhCCCCCCCCeE
Confidence 98889988886333
No 40
>PRK09265 aminotransferase AlaT; Validated
Probab=99.07 E-value=5.8e-10 Score=79.47 Aligned_cols=91 Identities=16% Similarity=0.185 Sum_probs=66.0
Q ss_pred ccCCCCChhhcccchhHHHHHHHhhc-----CCCceecCCCCCCC-C-CchHHHHHHHHHHHhcCCcccCCCCCCCCCHH
Q psy782 5 ASKFALPPRFEASVYSVWVEFIQLSL-----DHKPLNLGQGFPDY-E-SAPSHVSKGLADAATGENKLLNQYTRGFGHPR 77 (100)
Q Consensus 5 m~~~~~s~r~~~~~~~~~~~~~~~~~-----~~~~i~l~~G~P~~-~-~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~ 77 (100)
|+.+..++++..+..+.+..+.+.++ ..++|+|+.|+|+. + ++++.+.+++.+.+.. ..+|+++.|.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~i~~~~~~~~~~----~~~Y~~~~G~~~ 76 (404)
T PRK09265 1 MKPIEKSSKLENVCYDIRGPVLKEAKRLEEEGHKILKLNIGNPAPFGFEAPDEILRDVIRNLPT----AQGYSDSKGLFS 76 (404)
T ss_pred CCccchhHHHHhcCcchhHHHHHHHHHHHHcCCCeEEecCCCCCcCCCCCCHHHHHHHHHHhhc----CCCCCCCCCcHH
Confidence 44456677777777776665555332 34789999999953 1 4677888887776542 468999999999
Q ss_pred HHHHHHHHHhhhhCCCCCCCCCC
Q psy782 78 IVQAIAKLYSSLIERPLLPHQLV 100 (100)
Q Consensus 78 LR~aia~~~~~~~g~~~~~~~eI 100 (100)
||++||+++.+.++..++++ +|
T Consensus 77 lr~~ia~~~~~~~~~~~~~~-~i 98 (404)
T PRK09265 77 ARKAIMQYYQQKGIPDVDVD-DI 98 (404)
T ss_pred HHHHHHHHHhccCCCCCCcc-cE
Confidence 99999999987544467777 54
No 41
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.06 E-value=4.9e-10 Score=80.76 Aligned_cols=66 Identities=23% Similarity=0.273 Sum_probs=56.6
Q ss_pred CCCceecCCCCCC----CCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCCCCCCCCCC
Q psy782 31 DHKPLNLGQGFPD----YESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIERPLLPHQLV 100 (100)
Q Consensus 31 ~~~~i~l~~G~P~----~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~eI 100 (100)
..++|+|++|+|+ + .+|+++.+++.++++.+ ..++|++..|.++||++||+++.+.+|+.++++ +|
T Consensus 51 ~~~~i~l~~G~P~~~~~~-~~~~~~~~a~~~al~~~--~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~-~v 120 (430)
T PLN00145 51 PRPVLPLGHGDPSAFPCF-RTAPEAEDAVAAALRSG--KYNSYSTCVGLLPARRAIAEYLSRDLPYELSTD-DI 120 (430)
T ss_pred CCCeeeCCCCCCCCCCCC-CCCHHHHHHHHHHHHcC--cCCCCCCCccCHHHHHHHHHHHhhccCCCCChh-hE
Confidence 3479999999996 5 67789999999988775 356899999999999999999988889988887 54
No 42
>PRK05839 hypothetical protein; Provisional
Probab=99.06 E-value=9.9e-10 Score=77.68 Aligned_cols=63 Identities=24% Similarity=0.416 Sum_probs=54.7
Q ss_pred CCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCCCCCCCCCC
Q psy782 32 HKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIERPLLPHQLV 100 (100)
Q Consensus 32 ~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~eI 100 (100)
.++|+|+.|+|++ .+++.+.+++.+... ..+.|+++.|.++||++||+++++++|++++++ +|
T Consensus 24 ~~~i~l~~~~p~~-~~~~~~~~a~~~~~~----~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~-~I 86 (374)
T PRK05839 24 YKGLDLTIGEPQF-ETPKFIQDALKNNAH----LLNKYPKSAGEESLREAQRGFFKRRFKIELKEN-EL 86 (374)
T ss_pred CCeEEcCCCCCCC-CCCHHHHHHHHHHhh----ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcc-eE
Confidence 3799999999999 788888888887653 267899999999999999999999889988887 54
No 43
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=99.06 E-value=8.1e-10 Score=78.90 Aligned_cols=67 Identities=16% Similarity=0.118 Sum_probs=57.0
Q ss_pred CCceecCCCCCCCCCchHHHHHHHHHHHhcCC--cccCCCCCCCCCHHHHHHHHHHHhhhhCCCCCCCCCC
Q psy782 32 HKPLNLGQGFPDYESAPSHVSKGLADAATGEN--KLLNQYTRGFGHPRIVQAIAKLYSSLIERPLLPHQLV 100 (100)
Q Consensus 32 ~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~--~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~eI 100 (100)
.++++|+.|+|++ .+++.+.+++.+++.+.. ....+|++..|.++||++||+++.+.+|+.++++ +|
T Consensus 34 ~~~i~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~-~I 102 (409)
T PRK07590 34 AKIIRLGIGDVTQ-PLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISAD-EI 102 (409)
T ss_pred CceEEecCcCCCC-CCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChh-hE
Confidence 4689999999999 888889999988887521 1357899999999999999999988889999987 64
No 44
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=99.05 E-value=1e-09 Score=78.35 Aligned_cols=70 Identities=20% Similarity=0.254 Sum_probs=55.7
Q ss_pred cCCCceecCCCCCCCC-CchHHHHHHHHHHHhcCC--cccCCCCCCCCCHHHHHHHHHHHhhhhCCCCCCCCCC
Q psy782 30 LDHKPLNLGQGFPDYE-SAPSHVSKGLADAATGEN--KLLNQYTRGFGHPRIVQAIAKLYSSLIERPLLPHQLV 100 (100)
Q Consensus 30 ~~~~~i~l~~G~P~~~-~pp~~l~~a~~~~~~~~~--~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~eI 100 (100)
...++|+|+.|.|+.. ++.+.+.+++.+++.... ...++|++..|.++||++||+++++.+|+.++++ +|
T Consensus 28 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~-~I 100 (416)
T PRK09440 28 RTPGAIMLGGGNPAHIPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQ-NI 100 (416)
T ss_pred cCCCceeccCCCCCccCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChh-hE
Confidence 3467899999999862 234788888888776531 2346899999999999999999998889999887 55
No 45
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=99.04 E-value=8.2e-10 Score=78.53 Aligned_cols=81 Identities=21% Similarity=0.157 Sum_probs=59.2
Q ss_pred hcccchhHHHHHHHhhc---CCCceecCCCC---CCCCCch--HHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHH
Q psy782 14 FEASVYSVWVEFIQLSL---DHKPLNLGQGF---PDYESAP--SHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKL 85 (100)
Q Consensus 14 ~~~~~~~~~~~~~~~~~---~~~~i~l~~G~---P~~~~pp--~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~ 85 (100)
+..+..+.+..+..... ..++|+|++|. |++ .+| +.+.+++.++++.. ...+|++..|.++||++||++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~-~~p~~~~l~~a~~~~~~~~--~~~~Y~~~~G~~~lR~aia~~ 81 (396)
T PRK09257 5 LEAAPADPILGLMEAFRADPRPDKVNLGVGVYKDEQG-RTPVLRAVKKAEARLLETE--TTKNYLPIEGLAAYRQAVQEL 81 (396)
T ss_pred CCCCCCChHHHHHHHHhhCCCcCcEecceeeEECCCC-CEeccHHHHHHHHHhcccc--cCCCcCCCCCCHHHHHHHHHH
Confidence 44555556655554333 35799999996 444 344 88999998887654 356899999999999999999
Q ss_pred HhhhhCCCCCCC
Q psy782 86 YSSLIERPLLPH 97 (100)
Q Consensus 86 ~~~~~g~~~~~~ 97 (100)
+.+.++..++++
T Consensus 82 ~~~~~~~~~~~~ 93 (396)
T PRK09257 82 LFGADSPALAAG 93 (396)
T ss_pred hcCCCCcccccC
Confidence 987655556776
No 46
>PLN02231 alanine transaminase
Probab=99.03 E-value=1.4e-09 Score=80.40 Aligned_cols=80 Identities=13% Similarity=0.123 Sum_probs=62.7
Q ss_pred cchhHHHHHHHhhcCCCceecCCCCCCCCCchHHHHHHHHHHHhcC-CcccCCCCCCCCCHHHHHHHHHHHhhhhCCCCC
Q psy782 17 SVYSVWVEFIQLSLDHKPLNLGQGFPDYESAPSHVSKGLADAATGE-NKLLNQYTRGFGHPRIVQAIAKLYSSLIERPLL 95 (100)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~-~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~ 95 (100)
...+.++.+..++..+++|+|+.|.|.+ |.+.+.++. +++... +....+|+++.|.++||++||+++.+++|++++
T Consensus 114 ~~~~~~r~v~~~~~~p~~i~~~~~~~~f--p~~~i~~a~-~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~ 190 (534)
T PLN02231 114 QPITFFREVLALCDHPSLLDKSETHGLF--SADAIERAW-QILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPAD 190 (534)
T ss_pred CccHHHHHHHHhccCCccCCCCCccccC--CHHHHHHHH-HHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCC
Confidence 4466777888888888999999888877 446665555 466542 224678999999999999999999988899999
Q ss_pred CCCCC
Q psy782 96 PHQLV 100 (100)
Q Consensus 96 ~~~eI 100 (100)
++ +|
T Consensus 191 pe-~I 194 (534)
T PLN02231 191 PN-DI 194 (534)
T ss_pred cc-cE
Confidence 88 65
No 47
>PTZ00376 aspartate aminotransferase; Provisional
Probab=99.01 E-value=7.1e-10 Score=79.14 Aligned_cols=84 Identities=18% Similarity=0.084 Sum_probs=56.3
Q ss_pred hhcccchhHHHHHHHhhcC---CCceecCCCCC-CCCCch----HHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHH
Q psy782 13 RFEASVYSVWVEFIQLSLD---HKPLNLGQGFP-DYESAP----SHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAK 84 (100)
Q Consensus 13 r~~~~~~~~~~~~~~~~~~---~~~i~l~~G~P-~~~~pp----~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~ 84 (100)
++.....+.+..+.+.+.. .++|+|++|.| ++ .++ +.+.+++.+.+... ..++|+++.|+++||++||+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~-~~~~~~~~~~~~a~~~~~~~~--~~~~Y~~~~G~~~lR~aia~ 83 (404)
T PTZ00376 7 QVPLGPPDPILGLAAAFKADPSPSKVNLGIGAYRDE-NGKPYVLESVRKAEKIIAEKN--LDKEYLPIEGLQSFIEAAQK 83 (404)
T ss_pred cCCcCCCChHHHHHHHHhhcCCcccEecccceeECC-CCCEehhhHHHHHHHHhcccc--CCCCCCCCCCCHHHHHHHHH
Confidence 3444555556555554432 57899999997 45 444 44555544433322 35899999999999999999
Q ss_pred HHhhhhCCCCCCCCCC
Q psy782 85 LYSSLIERPLLPHQLV 100 (100)
Q Consensus 85 ~~~~~~g~~~~~~~eI 100 (100)
++...++..++++ +|
T Consensus 84 ~~~~~~~~~~~~~-~v 98 (404)
T PTZ00376 84 LLFGEASYALAEK-RI 98 (404)
T ss_pred HhcCCCccccccC-eE
Confidence 9977655667776 54
No 48
>PRK07568 aspartate aminotransferase; Provisional
Probab=98.98 E-value=2.9e-09 Score=75.45 Aligned_cols=85 Identities=20% Similarity=0.268 Sum_probs=66.4
Q ss_pred CCChhhcccchhHHHHHHHhhc-----CCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHH
Q psy782 9 ALPPRFEASVYSVWVEFIQLSL-----DHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIA 83 (100)
Q Consensus 9 ~~s~r~~~~~~~~~~~~~~~~~-----~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia 83 (100)
+++.++..+..+.++.+..... ..++|+|+.|.|++ .+|+.+.+++.+... . ..+|++..|.++||++||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~-~~~~~~~~a~~~~~~-~---~~~Y~~~~g~~~lr~~ia 76 (397)
T PRK07568 2 KISKRVLNMPASPIRKLVPYADEAKKRGIKVYHLNIGQPDI-KTPEVFFEAIKNYDE-E---VLAYSHSQGIPELREAFA 76 (397)
T ss_pred chhhHhhhCCcchHHHHHHHHHHHHhhCCCEEEecCCCCCC-CCCHHHHHHHHHHhc-C---CcCcCCCCCCHHHHHHHH
Confidence 3577777777777777765432 24689999999998 778888888877643 2 578999999999999999
Q ss_pred HHHhhhhCCCCCCCCCC
Q psy782 84 KLYSSLIERPLLPHQLV 100 (100)
Q Consensus 84 ~~~~~~~g~~~~~~~eI 100 (100)
+++.. +|+.++++ +|
T Consensus 77 ~~~~~-~~~~~~~~-~i 91 (397)
T PRK07568 77 KYYKK-WGIDVEPD-EI 91 (397)
T ss_pred HHHHH-hCCCCCcc-eE
Confidence 99985 68888877 54
No 49
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=98.94 E-value=4.1e-09 Score=73.82 Aligned_cols=61 Identities=26% Similarity=0.456 Sum_probs=52.8
Q ss_pred ceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCCCCCCCCC
Q psy782 34 PLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIERPLLPHQL 99 (100)
Q Consensus 34 ~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~e 99 (100)
+++|+.|+|++ .+++.+.+++.+... . ..+|+++.|.++||++|++++.+.+|+.++++++
T Consensus 2 ~~~~~~g~p~~-~~~~~~~~~~~~~~~-~---~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ 62 (350)
T TIGR03537 2 LFDFGTGDPKE-PTPPFIRKALIDAVP-E---VSQYPSALGTKALREAISGWFERRFGVKLDPDAQ 62 (350)
T ss_pred eEeccCCCCCC-CCCHHHHHHHHHHHh-c---cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCc
Confidence 68999999999 878889999988753 2 6789999999999999999999888998888633
No 50
>PRK08175 aminotransferase; Validated
Probab=98.93 E-value=7.7e-09 Score=73.53 Aligned_cols=64 Identities=23% Similarity=0.439 Sum_probs=53.7
Q ss_pred CCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCCCCCCC
Q psy782 31 DHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIERPLLPH 97 (100)
Q Consensus 31 ~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~ 97 (100)
..++++|+.|.|+. .+|+.+.+++.+.+... ..++|+++.|.++||++||+++.+.+|+.++++
T Consensus 28 ~~~~i~l~~g~p~~-~~~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 91 (395)
T PRK08175 28 GEDIIDFSMGNPDG-PTPPHIVEKLCEVAQRP--DTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPE 91 (395)
T ss_pred CCCeEEcCCCCCCC-CCCHHHHHHHHHHHhCC--CcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 35789999999999 66777777777766543 368899999999999999999998889988876
No 51
>PRK06207 aspartate aminotransferase; Provisional
Probab=98.90 E-value=6.7e-09 Score=74.26 Aligned_cols=65 Identities=14% Similarity=0.192 Sum_probs=54.0
Q ss_pred CceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCCCCCC-CCCC
Q psy782 33 KPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIERPLLP-HQLV 100 (100)
Q Consensus 33 ~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~-~~eI 100 (100)
++|+|+.|.|++..|++.+.+++.+++... ...+|++..|.++||++||+++++.+|+.+++ + +|
T Consensus 40 ~~i~l~~g~~~~~~p~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~-~I 105 (405)
T PRK06207 40 RPVDFSHGDVDAHEPTPGAFELFSAGVERG--GVQAYTEYRGDADIRELLAARLAAFTGAPVDAAD-EL 105 (405)
T ss_pred CceecCCcCCCCCCCCHHHHHHHHHHHhcC--CCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-CE
Confidence 689999999995256678888888887654 35789999999999999999999988988887 5 54
No 52
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=98.90 E-value=1e-08 Score=72.02 Aligned_cols=63 Identities=27% Similarity=0.379 Sum_probs=53.2
Q ss_pred CCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCCC-CCCCCCC
Q psy782 31 DHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIERP-LLPHQLV 100 (100)
Q Consensus 31 ~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~-~~~~~eI 100 (100)
..++|+|+.|+|++ ++++.+.+++.++.. ..+|+++.|.++||++|++++++.+|+. ++++ +|
T Consensus 20 ~~~~i~l~~~~p~~-~~~~~~~~~~~~~~~-----~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~-~I 83 (357)
T TIGR03539 20 PDGIVDLSVGTPVD-PVPPLIRAALAAAAD-----APGYPQTWGTPELREAIVDWLERRRGVPGLDPT-AV 83 (357)
T ss_pred CCCeEEccCCCCCC-CCCHHHHHHHHHHHh-----hCCCCcccCCHHHHHHHHHHHHHhcCCCCCCcC-eE
Confidence 34689999999988 777888888877542 4679999999999999999999988987 8887 54
No 53
>PRK06836 aspartate aminotransferase; Provisional
Probab=98.89 E-value=1.4e-08 Score=72.22 Aligned_cols=67 Identities=24% Similarity=0.391 Sum_probs=56.9
Q ss_pred CCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCCCCCCCCCC
Q psy782 32 HKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIERPLLPHQLV 100 (100)
Q Consensus 32 ~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~eI 100 (100)
.++++|+.|.|++ ++++.+.+++.+.++.......+|++..|+++||++||+++.+.++..++++ +|
T Consensus 33 ~~~~~l~~g~p~~-~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i 99 (394)
T PRK06836 33 DNVFDFSLGNPSV-PPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTAD-HI 99 (394)
T ss_pred CCeEEecCcCCCC-CCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcC-cE
Confidence 4689999999998 8889999999988875432357899999999999999999998888888887 54
No 54
>PRK06290 aspartate aminotransferase; Provisional
Probab=98.83 E-value=3.1e-08 Score=71.09 Aligned_cols=64 Identities=22% Similarity=0.252 Sum_probs=53.1
Q ss_pred CceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCCC-CCCCCCC
Q psy782 33 KPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIERP-LLPHQLV 100 (100)
Q Consensus 33 ~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~-~~~~~eI 100 (100)
++|+|++|+|++ .+++.+.+++.+.+... ....|++ .|.++||++||+++++.+|+. ++++++|
T Consensus 45 ~~i~L~~g~p~~-~~~~~~~~~l~~~~~~~--~~~~Y~~-~G~~~lr~aia~~~~~~~g~~~~~~~~~I 109 (410)
T PRK06290 45 ELIDMGVGEPDE-MADESVVEVLCEEAKKP--ENRGYAD-NGIQEFKEAAARYMEKVFGVKDIDPVTEV 109 (410)
T ss_pred CeEEcCCCCCCC-CCCHHHHHHHHHHHhCC--CCCCCCC-CCcHHHHHHHHHHHHHHcCCCcCCCcceE
Confidence 589999999999 78888899888876543 2567975 899999999999999888988 8886344
No 55
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=98.79 E-value=1.2e-08 Score=71.94 Aligned_cols=65 Identities=17% Similarity=0.180 Sum_probs=54.4
Q ss_pred CceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCCCCCCCCCC
Q psy782 33 KPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIERPLLPHQLV 100 (100)
Q Consensus 33 ~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~eI 100 (100)
..|+|+.|+|++ .||+.+.+++.+++.+.....+.|+. .|.++||++||+|+++.+|+.++++ +|
T Consensus 27 ~~i~l~~~~~~~-~~~~~~~~al~~~l~~~~~~~~~Y~~-~g~~~lr~aia~~~~~~~~~~~~~~-~I 91 (368)
T PRK03317 27 VPVRLNTNENPY-PPSPALVADIAEAVAEAAAGLNRYPD-RDAVALRADLAAYLTAQTGVGLTVE-NV 91 (368)
T ss_pred ceeEecCCCCCC-CCCHHHHHHHHHHHhhhhhhhccCCC-CchHHHHHHHHHHhhhhccCCCChh-hE
Confidence 469999999999 89999999999887653223678964 6999999999999999889988887 54
No 56
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=98.75 E-value=3e-08 Score=72.23 Aligned_cols=68 Identities=19% Similarity=0.212 Sum_probs=59.5
Q ss_pred CCceecCCCCCCCC-CchHHHHHHHHHHHhcCCcc-cCCCCCCCCCHHHHHHHHHHHhhhhCCCCCCCCCC
Q psy782 32 HKPLNLGQGFPDYE-SAPSHVSKGLADAATGENKL-LNQYTRGFGHPRIVQAIAKLYSSLIERPLLPHQLV 100 (100)
Q Consensus 32 ~~~i~l~~G~P~~~-~pp~~l~~a~~~~~~~~~~~-~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~eI 100 (100)
..+++|+.|.|+.+ +|-+.+.+++.++++..... ..+|+++.|.++||++|++++....|+.++++ +|
T Consensus 89 ~~~i~f~~g~p~~~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~-~I 158 (459)
T COG1167 89 PSVIDFAGGLPDPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPE-QI 158 (459)
T ss_pred CceecCCCCCCCcccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcC-eE
Confidence 56899999999888 77899999999998765444 68999999999999999999996679999998 65
No 57
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=98.75 E-value=4.5e-08 Score=69.84 Aligned_cols=77 Identities=17% Similarity=0.183 Sum_probs=59.5
Q ss_pred hhHHHHHHHhh-----cCCCceecCCCCCC--CC-CchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhh
Q psy782 19 YSVWVEFIQLS-----LDHKPLNLGQGFPD--YE-SAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLI 90 (100)
Q Consensus 19 ~~~~~~~~~~~-----~~~~~i~l~~G~P~--~~-~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~ 90 (100)
.+.++++.... .+.++|+|++|.|+ ++ +|++.+.+++.+.+... ...+|++..|.++||++||+++...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~ 90 (403)
T TIGR01265 13 VNPIRAIVDNLKVKPNPEKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSG--KFNGYAPSVGALAAREAVAEYLSSDL 90 (403)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcC--CCCCCCCCCCCHHHHHHHHHHHHhhc
Confidence 44565655532 23579999999986 22 67789999999888654 24689999999999999999998777
Q ss_pred CCCCCCC
Q psy782 91 ERPLLPH 97 (100)
Q Consensus 91 g~~~~~~ 97 (100)
|+.++++
T Consensus 91 ~~~~~~~ 97 (403)
T TIGR01265 91 PGKLTAD 97 (403)
T ss_pred CCCCCHH
Confidence 8777766
No 58
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=98.73 E-value=5.8e-08 Score=69.14 Aligned_cols=62 Identities=21% Similarity=0.322 Sum_probs=51.9
Q ss_pred CCceecCCCCCC----CCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCCCCCCC
Q psy782 32 HKPLNLGQGFPD----YESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIERPLLPH 97 (100)
Q Consensus 32 ~~~i~l~~G~P~----~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~ 97 (100)
.++|+|++|+|+ + +|++.+.+++.+++... ..++|++..|.++||++||+++.+. |..++++
T Consensus 31 ~~~i~l~~g~p~~~~~~-~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~aia~~~~~~-~~~~~~~ 96 (401)
T TIGR01264 31 KPMIKLSIGDPTVFGNL-PTDPEVMQAMKDSLDSG--KYNGYAPTVGALSAREAIASYYHNP-DGPIEAD 96 (401)
T ss_pred CCeeecCCCCCCCcCCC-CCCHHHHHHHHHHHhcc--CCCCCCCCCCCHHHHHHHHHHHhhc-CCCCCHH
Confidence 468999999996 5 77799999999888764 3568999999999999999999874 6667766
No 59
>PLN02994 1-aminocyclopropane-1-carboxylate synthase
Probab=98.66 E-value=2.3e-08 Score=63.28 Aligned_cols=57 Identities=11% Similarity=0.070 Sum_probs=42.1
Q ss_pred ceecCCCC---CCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhC--CCCCCCCCC
Q psy782 34 PLNLGQGF---PDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIE--RPLLPHQLV 100 (100)
Q Consensus 34 ~i~l~~G~---P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g--~~~~~~~eI 100 (100)
+|.+.+|+ |++ .+|+.+.+++.+. ..|++..|.++||++||+|+.+.+| +.++++ +|
T Consensus 59 li~~~i~~~p~~d~-~~~~~i~~~~~~~--------a~Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd-~I 120 (153)
T PLN02994 59 LIEEWIEENPHADI-CTAEGTIDSFKDI--------ALFQDYHGLANFRKAIANFMAEARGGRVKFDAD-MI 120 (153)
T ss_pred HHHHHHhCCCcccc-CCcHHHHHHHHHH--------hcCCCCCCcHHHHHHHHHHHHHHhCCCCccchh-he
Confidence 34444555 667 7776666655542 2399999999999999999999888 678887 54
No 60
>PLN02397 aspartate transaminase
Probab=98.65 E-value=1.2e-07 Score=68.40 Aligned_cols=76 Identities=21% Similarity=0.099 Sum_probs=52.5
Q ss_pred hcccchhHHHHHHHhhc---CCCceecCCCC-CCCC-Cch--HHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHH
Q psy782 14 FEASVYSVWVEFIQLSL---DHKPLNLGQGF-PDYE-SAP--SHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLY 86 (100)
Q Consensus 14 ~~~~~~~~~~~~~~~~~---~~~~i~l~~G~-P~~~-~pp--~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~ 86 (100)
+.....+.+..+.+..+ ....++|+.|. |+++ +|. +.+.++...++..+ ...+|++..|+++||++||+++
T Consensus 27 ~~~~~~~~i~~~~~~~~~~~~~~~l~l~~g~~p~~~~~p~~~~~~~~a~~~~~~~~--~~~~Y~~~~G~~~LR~aia~~~ 104 (423)
T PLN02397 27 VEPAPPDPILGVTEAFLADPSPVKLNLGVGAYRTEEGKPVVLNVVRKAEQRLLAGS--RNKEYLPIEGLAEFNKLSAKLA 104 (423)
T ss_pred CCcCCCChHHHHHHHHhhCCCcceEecccceeeCCCCCcccchHHHHHHHHhhccC--CCCCCCCcCCCHHHHHHHHHHH
Confidence 44455556666665542 34679999995 7874 332 56777766655333 3558999999999999999999
Q ss_pred hhhhC
Q psy782 87 SSLIE 91 (100)
Q Consensus 87 ~~~~g 91 (100)
...++
T Consensus 105 ~~~~~ 109 (423)
T PLN02397 105 YGADS 109 (423)
T ss_pred cCCCC
Confidence 76543
No 61
>KOG0259|consensus
Probab=98.63 E-value=1.2e-07 Score=67.28 Aligned_cols=65 Identities=22% Similarity=0.226 Sum_probs=54.8
Q ss_pred CceecCCCCCCCC---CchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCCCCCCCCCC
Q psy782 33 KPLNLGQGFPDYE---SAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIERPLLPHQLV 100 (100)
Q Consensus 33 ~~i~l~~G~P~~~---~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~eI 100 (100)
.+|+|+.|+|..- .+.++..+|+.++++.+ ..++|+|+.|++.-|+|||+|+.+...-.++++ ||
T Consensus 62 ~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sg--k~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~-DV 129 (447)
T KOG0259|consen 62 PILPLGHGDPSVYPCFRTSQEAEQAVVDALRSG--KGNGYAPSVGILPARRAVAEYLNRDLPNKLTAD-DV 129 (447)
T ss_pred eeccCCCCCCCccccccCCHHHHHHHHHHHhcC--CCCCcCCccccHHHHHHHHHHhhcCCCCccCcC-ce
Confidence 6899999998652 34488899999999988 589999999999999999999877666667777 54
No 62
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=98.61 E-value=7.5e-08 Score=68.10 Aligned_cols=64 Identities=22% Similarity=0.189 Sum_probs=51.8
Q ss_pred CceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhh--CCCCCCCCCC
Q psy782 33 KPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLI--ERPLLPHQLV 100 (100)
Q Consensus 33 ~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~--g~~~~~~~eI 100 (100)
.+++|+.|+|++ .||+.+.+++.+++.... ...+|+. .|.++||++||+++.+.+ |+.++++ +|
T Consensus 29 ~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~Y~~-~G~~~Lr~aia~~~~~~~~~~~~v~~~-~I 94 (374)
T PRK02610 29 QLDRLDTNEFPY-DLPPDLKQKLAWLYQQGI-ESNRYPD-GGHEALKQAIAEYVNESAAGSSQITPA-NI 94 (374)
T ss_pred ceeEecCCCCCC-CCCHHHHHHHHHHHhhcc-cccCCCC-CchHHHHHHHHHHhCccccccCCCCHH-HE
Confidence 489999999999 888999999998876631 1357964 799999999999998876 5667776 54
No 63
>PRK07324 transaminase; Validated
Probab=98.58 E-value=3.1e-08 Score=70.11 Aligned_cols=52 Identities=17% Similarity=0.051 Sum_probs=45.8
Q ss_pred CCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHh
Q psy782 31 DHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYS 87 (100)
Q Consensus 31 ~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~ 87 (100)
..++++|++|+|++ ++|+.+ +++.+++... ..+|++..|.++||++||+++.
T Consensus 25 ~~~~~~~~~~e~~~-~~~~~~-~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~~~ 76 (373)
T PRK07324 25 ESCIDSLTLEELLA-LAGKNP-EAFYQELGQK---KLTYGWIEGSPEFKEAVASLYQ 76 (373)
T ss_pred cCCCCCCcHHHHHh-ccCcch-HHHHHHHhcC---CccCCCCCCCHHHHHHHHHHhc
Confidence 34799999999999 888888 8888888776 6799999999999999999884
No 64
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=98.53 E-value=1.1e-07 Score=69.37 Aligned_cols=76 Identities=14% Similarity=0.030 Sum_probs=57.5
Q ss_pred ChhhcccchhHHHHHHHh-----hcCCCceecCCCCC--CCCCchH---HHHHHHHHHHhcCCcccCCCCCCCCCHHHHH
Q psy782 11 PPRFEASVYSVWVEFIQL-----SLDHKPLNLGQGFP--DYESAPS---HVSKGLADAATGENKLLNQYTRGFGHPRIVQ 80 (100)
Q Consensus 11 s~r~~~~~~~~~~~~~~~-----~~~~~~i~l~~G~P--~~~~pp~---~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~ 80 (100)
.-|++.+.++.+..+.+. .+..++|+|++|+| |+ .+|. ++.+++.+++..+ .++|++..|.++||+
T Consensus 10 ~~r~~~v~~~~~~~~~~~~~~l~~~g~~~~~L~~g~p~~D~-~tds~t~a~~~a~~~a~~~g---~~~Y~~~~g~~~Lre 85 (460)
T PRK13238 10 PFRIKMVEPIRLTTREERERALAEAGYNPFLLKSEDVFIDL-LTDSGTGAMSDRQWAAMMRG---DEAYAGSRSYYRLED 85 (460)
T ss_pred ceeeceeccccccCHHHHHHHHHHcCCCEEeCCCCCCCCCC-CCCCCchhhhHHHHHHHHhC---CcccCCCCCHHHHHH
Confidence 345566666555444332 23468999999999 56 7765 6889998888776 678999999999999
Q ss_pred HHHHHHhhhh
Q psy782 81 AIAKLYSSLI 90 (100)
Q Consensus 81 aia~~~~~~~ 90 (100)
+|++++...+
T Consensus 86 aia~~~~~~~ 95 (460)
T PRK13238 86 AVKDIFGYPY 95 (460)
T ss_pred HHHHHhCCCc
Confidence 9999997653
No 65
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=98.49 E-value=2.8e-07 Score=64.47 Aligned_cols=59 Identities=10% Similarity=0.119 Sum_probs=47.4
Q ss_pred CCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCCCCCCC
Q psy782 32 HKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIERPLLPH 97 (100)
Q Consensus 32 ~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~ 97 (100)
.++|+|++|+|++ .||+.+.+++.+.+..+ ..+.|++. |.++||++||+++.+. + ++++
T Consensus 19 ~~~i~l~~~~~~~-~~p~~~~~~~~~~~~~~--~~~~Y~~~-~~~~Lr~aia~~~~~~-~--~~~~ 77 (335)
T PRK14808 19 RDRTYLALNENPF-PFPEDLVDEVFRRLNSD--TLRIYYDS-PDEELIEKILSYLDTD-F--LSKN 77 (335)
T ss_pred CceeEecCCCCCC-CCCHHHHHHHHHHhhhh--hhhcCCCC-ChHHHHHHHHHHhCCC-C--CCcc
Confidence 4789999999999 88999999998877654 23457654 9999999999999775 3 4565
No 66
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=98.47 E-value=8.1e-07 Score=63.41 Aligned_cols=62 Identities=21% Similarity=0.229 Sum_probs=49.1
Q ss_pred CCceecCCCCCCCCCchHHHHHHHHHHHhcCC--cccCCCCCCCCCHHHHHHHHHHHhhhhCCCCCCC
Q psy782 32 HKPLNLGQGFPDYESAPSHVSKGLADAATGEN--KLLNQYTRGFGHPRIVQAIAKLYSSLIERPLLPH 97 (100)
Q Consensus 32 ~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~--~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~ 97 (100)
.++|+|+.|+|++ .+++.+.+++.+++++.. ....+|++..|.++||++||+++.+. + +++|
T Consensus 33 ~~~i~l~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~-~--~~~d 96 (402)
T TIGR03542 33 ADIIRLGIGDTTQ-PLPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRG-R--IDPE 96 (402)
T ss_pred CCeEEcCCCCCCC-CCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhc-C--CCHH
Confidence 4689999999999 888889999888887531 12467999999999999999987442 3 5565
No 67
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=98.45 E-value=1.6e-07 Score=65.69 Aligned_cols=62 Identities=27% Similarity=0.343 Sum_probs=49.5
Q ss_pred CceecCCCCCCCCC----chHHHHHHHHH-HHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCCCCCCC
Q psy782 33 KPLNLGQGFPDYES----APSHVSKGLAD-AATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIERPLLPH 97 (100)
Q Consensus 33 ~~i~l~~G~P~~~~----pp~~l~~a~~~-~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~ 97 (100)
++|+|+.|.++. . +++.+.+++.+ ..... ..++|++..|.++||++||+++.+..|+.++++
T Consensus 2 ~~I~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~ 68 (363)
T PF00155_consen 2 DVINLGSNAPLL-LSQNPPPPAAIKAAIRGAATSS--SFLGYPPPQGYPELREAIADFLGRRYGVPVDPE 68 (363)
T ss_dssp TEEESSSSSTSS-TTSSHHHHHHHHHHHHHHHHHT--GCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGG
T ss_pred CEEEEECCCCCC-cccccchHHHHHHHHHHhhccc--ccccCCCchhhHHHHHHHHHHhhhccCcccccc
Confidence 589999999988 5 56666666665 33322 378999999999999999999997778877765
No 68
>PRK09275 aspartate aminotransferase; Provisional
Probab=98.42 E-value=4.6e-07 Score=67.17 Aligned_cols=50 Identities=12% Similarity=0.025 Sum_probs=41.1
Q ss_pred CceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhh
Q psy782 33 KPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSL 89 (100)
Q Consensus 33 ~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~ 89 (100)
++|+|++|+|++ .||+.+.+++. .+. + . +|+++.|.++||++|++++.++
T Consensus 101 ~~i~l~~g~p~~-~~~~~v~e~~~-~~~-~---~-~Y~~~~g~~~lreaia~~~~~~ 150 (527)
T PRK09275 101 DAVSYVRDQLGF-DADEFVYELVD-GII-G---D-NYPVPDRMLKHTEKIVKDYLRQ 150 (527)
T ss_pred HHHhhcCCCCCC-CCCHHHHHHHH-HHh-c---C-CCCCCCCCHHHHHHHHHHHHHh
Confidence 479999999999 88999988554 443 3 2 4999999999999999977553
No 69
>PRK07908 hypothetical protein; Provisional
Probab=98.29 E-value=1.7e-06 Score=60.53 Aligned_cols=51 Identities=18% Similarity=0.162 Sum_probs=44.8
Q ss_pred CCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHH
Q psy782 31 DHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLY 86 (100)
Q Consensus 31 ~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~ 86 (100)
..++++|++|.+++ .||+.+.+++.+.+.. ..+|++..|.++||++||+++
T Consensus 21 ~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~----~~~Y~~~~g~~~lr~aia~~~ 71 (349)
T PRK07908 21 GPGLLDFAVNVRHD-TPPEWLRERLAARLGD----LAAYPSTEDERRARAAVAARH 71 (349)
T ss_pred CCCeEEecCCCCCC-CCCHHHHHHHHHHhhH----hhcCCCccchHHHHHHHHHHh
Confidence 35799999999999 8999999999988753 467999999999999999986
No 70
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=98.23 E-value=1.3e-06 Score=60.97 Aligned_cols=50 Identities=24% Similarity=0.317 Sum_probs=42.8
Q ss_pred CCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHH
Q psy782 32 HKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLY 86 (100)
Q Consensus 32 ~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~ 86 (100)
.++|+|+.|.|++ .|++.+.+++.+++.+. ..+|++. |.++||++||+++
T Consensus 24 ~~~i~l~~~~~~~-~~~~~~~~a~~~~~~~~---~~~y~~~-~~~~lr~aia~~~ 73 (353)
T PRK05387 24 AKLIKLNTNENPY-PPSPKVLEAIRAALGDD---LRLYPDP-NADALRQAIAAYY 73 (353)
T ss_pred cceeeccCCCCCC-CCCHHHHHHHHHHhhhh---hhcCCCC-cHHHHHHHHHHHh
Confidence 4689999999999 87889999999887764 6789655 7799999999997
No 71
>PLN02672 methionine S-methyltransferase
Probab=98.18 E-value=7.7e-06 Score=64.90 Aligned_cols=62 Identities=10% Similarity=0.014 Sum_probs=50.8
Q ss_pred CCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCCCCCCCCCC
Q psy782 31 DHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIERPLLPHQLV 100 (100)
Q Consensus 31 ~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~eI 100 (100)
..++|+|++|+|++ +||+.+.+++.+++... . | ..|++++|++|++++++.+|++++++++|
T Consensus 696 g~~vI~LsinE~d~-ppPp~V~eAi~eal~~~---~--~--s~g~pdlr~aLa~~la~~~Gv~~d~~e~I 757 (1082)
T PLN02672 696 ESSLIHMDVDESFL-PVPSAVKASIFESFVRQ---N--I--SESETDPRPSILQFIKSNYGFPTDSCTEF 757 (1082)
T ss_pred CCCEEEEeCCCCCC-CCCHHHHHHHHHHHhhc---C--C--CCCChHHHHHHHHHHHHHhCcCCCCCCEE
Confidence 35799999999999 99999999998877543 1 2 45789999999999999899998765343
No 72
>PRK06225 aspartate aminotransferase; Provisional
Probab=98.17 E-value=8.4e-06 Score=57.71 Aligned_cols=55 Identities=16% Similarity=0.179 Sum_probs=47.5
Q ss_pred hcCCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHH
Q psy782 29 SLDHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLY 86 (100)
Q Consensus 29 ~~~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~ 86 (100)
....++|+|+.|.+.+ +|++.+.+++.+++... ...+|++..|.++||++||+++
T Consensus 25 ~~~~~~i~l~~~~~~~-~~~~~~~~a~~~~~~~~--~~~~y~~~~g~~~lr~~ia~~l 79 (380)
T PRK06225 25 FKDKEMIWMGQNTNHL-GPHEEVREAMIRCIEEG--EYCKYPPPEGFPELRELILKDL 79 (380)
T ss_pred hhcCCeEEccCCCCCC-CCCHHHHHHHHHHHhcC--CCCCCCCCcchHHHHHHHHHhc
Confidence 3456899999999999 88899999999988764 3578999999999999999986
No 73
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=98.14 E-value=6.2e-06 Score=57.86 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=44.7
Q ss_pred CCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHh
Q psy782 32 HKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYS 87 (100)
Q Consensus 32 ~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~ 87 (100)
.++|+|+.|+|++ .||+++.+++.+.+... ...+|++ .|.++||++||+++.
T Consensus 26 ~~~i~l~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~Y~~-~~~~~lr~~ia~~~~ 77 (356)
T PRK04870 26 TGMVKLDAMENPY-RLPAELRAELGERLAEV--ALNRYPD-PRAAALKAALRAAMG 77 (356)
T ss_pred CCceeCcCCCCCC-CCCHHHHHHHHHHhhcc--ccccCCC-CCHHHHHHHHHHHhC
Confidence 4799999999999 89999999999888654 2578987 688999999999984
No 74
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=98.12 E-value=6.2e-06 Score=57.93 Aligned_cols=49 Identities=14% Similarity=0.251 Sum_probs=41.2
Q ss_pred CCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHH
Q psy782 32 HKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLY 86 (100)
Q Consensus 32 ~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~ 86 (100)
.++|+|+.|++++ .||+.+.+++.+.+. . ..+|+ ..|.++||++||+++
T Consensus 30 ~~~i~l~~~~~~~-~~~~~~~~~~~~~~~-~---~~~Y~-~~~~~~lr~~ia~~~ 78 (357)
T PRK14809 30 DDLVKLSSNENPH-GPSPAAVEAIREAAE-R---VHSYP-KASHADLTAALADRW 78 (357)
T ss_pred cceeEecCCCCCC-CCCHHHHHHHHHHHh-h---hhcCC-CCCHHHHHHHHHHHh
Confidence 4799999999999 777788888888765 3 56896 479999999999987
No 75
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=98.06 E-value=2.9e-05 Score=54.26 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=56.1
Q ss_pred cCCCceecCCCCCCCCCch--HHHHHHHHHHHhcCC--cccCCCCCCCCCHHHHHHHHHHHhhhhCCCCCCCCCC
Q psy782 30 LDHKPLNLGQGFPDYESAP--SHVSKGLADAATGEN--KLLNQYTRGFGHPRIVQAIAKLYSSLIERPLLPHQLV 100 (100)
Q Consensus 30 ~~~~~i~l~~G~P~~~~pp--~~l~~a~~~~~~~~~--~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~eI 100 (100)
+.+++|.||.|+|.. .|- +...+...+.+.++. ...-.|+.++|...|.+++++.++++||.+++++ +|
T Consensus 28 rt~g~imLggGNPa~-iPem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit~~-NI 100 (417)
T COG3977 28 RTPGAIMLGGGNPAR-IPEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITAQ-NI 100 (417)
T ss_pred cCCCceeeCCCCccc-ChhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCccc-ee
Confidence 446799999999988 665 567777777776652 2345799999999999999999999999999887 54
No 76
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=98.01 E-value=2.2e-05 Score=55.61 Aligned_cols=51 Identities=20% Similarity=0.176 Sum_probs=42.0
Q ss_pred cCCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHH
Q psy782 30 LDHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLY 86 (100)
Q Consensus 30 ~~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~ 86 (100)
...++|+|+.|++++ .|++.+.+++.+.+.. ...| |..|.++||++||+++
T Consensus 27 ~~~~~i~l~~nen~~-~~~~~v~~a~~~~~~~----~~~Y-p~~g~~~Lr~aia~~~ 77 (366)
T PRK01533 27 GDHSFVKLASNENPF-GCSPRVLDELQKSWLD----HALY-PDGGATTLRQTIANKL 77 (366)
T ss_pred CCCceEEeCCCCCCC-CCCHHHHHHHHHHHHh----cCcC-CCCCHHHHHHHHHHHh
Confidence 345789999999999 8889999998877644 2357 5679999999999987
No 77
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=98.00 E-value=1.5e-05 Score=55.70 Aligned_cols=52 Identities=15% Similarity=0.286 Sum_probs=42.8
Q ss_pred CCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHh
Q psy782 32 HKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYS 87 (100)
Q Consensus 32 ~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~ 87 (100)
.++|+|+.|.|++ .+++.+.+++.+++... ...+|+ ..|.++||++||+++.
T Consensus 18 ~~~i~l~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~Y~-~~g~~~lr~~ia~~~~ 69 (337)
T PRK03967 18 NYRIWLDKNENPF-DLPEELKEEIFEELKRV--PFNRYP-HITSDPLREAIAEFYG 69 (337)
T ss_pred CceEEecCCCCCC-CCCHHHHHHHHHHhhcC--ccccCC-CCCHHHHHHHHHHHhC
Confidence 3679999999998 78888889888887543 257896 5799999999999883
No 78
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=97.96 E-value=5.7e-06 Score=60.51 Aligned_cols=65 Identities=17% Similarity=0.187 Sum_probs=47.4
Q ss_pred CceecCCCCCCCCCchHHHHHHHHHHHhc---------CCcccCCCCCCCCCHHHHHHHHHHHhhhhCC--CCCCCCCC
Q psy782 33 KPLNLGQGFPDYESAPSHVSKGLADAATG---------ENKLLNQYTRGFGHPRIVQAIAKLYSSLIER--PLLPHQLV 100 (100)
Q Consensus 33 ~~i~l~~G~P~~~~pp~~l~~a~~~~~~~---------~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~--~~~~~~eI 100 (100)
++|+|+.+++.. . .+.+.+.+.+.... .......|++..|.++||++||+++.+.+|. .++++ +|
T Consensus 39 g~i~L~~~En~l-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~-~I 114 (468)
T PLN02450 39 GIIQMGLAENQL-S-FDLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPN-KL 114 (468)
T ss_pred eeEEeehhHhHh-h-HHHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHHhhCCCCCcChH-He
Confidence 689999999877 4 47777776654221 0013466999999999999999999887774 46776 44
No 79
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=97.95 E-value=2.8e-05 Score=55.10 Aligned_cols=55 Identities=15% Similarity=0.212 Sum_probs=46.1
Q ss_pred CceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCC-----CCCCHHHHHHHHHHHhhhhCCC
Q psy782 33 KPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTR-----GFGHPRIVQAIAKLYSSLIERP 93 (100)
Q Consensus 33 ~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~-----~~G~~~LR~aia~~~~~~~g~~ 93 (100)
++++|++|.|++ .+|+.+.++..++ .. .++|++ ..|.++||+++++++++.+|++
T Consensus 21 ~~~~l~~g~~~~-~~p~~~~~~~~~~--~~---~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~ 80 (398)
T cd00613 21 SMSFLGSGTYKH-NPPAVIKRNILEN--EF---YTAYTPYQPEISQGRLQALFELQTMLCELTGMD 80 (398)
T ss_pred CcccccccccCC-cCcHHHHHHhccc--cC---cccCCCCChhhhhhHHHHHHHHHHHHHHHHCCC
Confidence 569999999999 8888888877765 22 456776 7999999999999999988875
No 80
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=97.95 E-value=3.5e-05 Score=54.85 Aligned_cols=60 Identities=17% Similarity=0.307 Sum_probs=55.7
Q ss_pred CCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCCCCCCC
Q psy782 32 HKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIERPLLPH 97 (100)
Q Consensus 32 ~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~ 97 (100)
.++++|.+.+-|| ..|+++.+|+++.++++ .++|+ .+..+|-++|++|++++++..+.++
T Consensus 25 ~DvlPmWVADMDf-~~pp~i~~Al~~rvdhG---vfGY~--~~~~~~~~ai~~w~~~r~~~~i~~e 84 (388)
T COG1168 25 EDVLPMWVADMDF-PTPPEIIEALRERVDHG---VFGYP--YGSDELYAAIAHWFKQRHQWEIKPE 84 (388)
T ss_pred CCcceeeeecccC-CCCHHHHHHHHHHHhcC---CCCCC--CCCHHHHHHHHHHHHHhcCCCCCcc
Confidence 5899999999999 99999999999999998 89996 7889999999999999999888776
No 81
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=97.93 E-value=1.7e-05 Score=55.83 Aligned_cols=49 Identities=16% Similarity=0.240 Sum_probs=40.8
Q ss_pred CCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHH
Q psy782 32 HKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLY 86 (100)
Q Consensus 32 ~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~ 86 (100)
.++|+|+.|.+.+ .||+.+.+++.+.+.. ..+|++. |.++||++||+++
T Consensus 22 ~~~i~l~~~~n~~-~~~~~~~~a~~~~~~~----~~~Y~~~-~~~~Lr~aia~~~ 70 (360)
T PRK07392 22 DAILDFSASINPL-GPPESVIAAIQSALSA----LRHYPDP-DYRELRLALAQHH 70 (360)
T ss_pred ccEEEeCCcCCCC-CCCHHHHHHHHHHHHH----hhcCCCc-CHHHHHHHHHHHh
Confidence 3689999998888 8889999998877653 5679875 5689999999998
No 82
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=97.93 E-value=1.3e-05 Score=55.81 Aligned_cols=50 Identities=20% Similarity=0.358 Sum_probs=41.9
Q ss_pred CCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHh
Q psy782 32 HKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYS 87 (100)
Q Consensus 32 ~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~ 87 (100)
.++|+|++|++++ .+|+.+.+++.+++. . .++|++..| ++||++||+++.
T Consensus 19 ~~~i~l~~~~~~~-~~~~~~~~a~~~~~~-~---~~~y~~~~~-~~lr~~ia~~~~ 68 (346)
T TIGR01141 19 KEVIKLNSNENPF-GPPPKAKEALRAEAD-K---LHRYPDPDP-AELKQALADYYG 68 (346)
T ss_pred CceEEccCCCCCC-CCCHHHHHHHHHhHH-H---hhcCCCCCH-HHHHHHHHHHhC
Confidence 3699999999988 788889999988764 2 467987777 999999999984
No 83
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=97.88 E-value=1.9e-05 Score=56.89 Aligned_cols=52 Identities=17% Similarity=0.118 Sum_probs=42.4
Q ss_pred CceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhh
Q psy782 33 KPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSL 89 (100)
Q Consensus 33 ~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~ 89 (100)
.+++|+.|.|++ .+++.+.+++.+++.. ..+|++..|.++||++|++++.+.
T Consensus 86 ~~i~L~~g~p~~-~~~p~~~~~~~~~~~~----~~~Y~~~~g~~~lr~~ia~~~~~~ 137 (431)
T PRK15481 86 PLHDLAGGNPDP-QRLPDLSRYFARLSRT----PRLYGDAPVSPELHAWAARWLRDD 137 (431)
T ss_pred hhhhhhcCCCCh-hHhHHHHHHHHHhhhh----hhhcCCcCCCHHHHHHHHHHHhhc
Confidence 478999999998 6656688888776543 467999999999999999998653
No 84
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=97.77 E-value=4.2e-05 Score=53.83 Aligned_cols=49 Identities=14% Similarity=0.257 Sum_probs=41.0
Q ss_pred CCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHH
Q psy782 32 HKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLY 86 (100)
Q Consensus 32 ~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~ 86 (100)
.++|+|++|+|++ .||+.+.+++.+.+.. ...|++ .|.++||++||+++
T Consensus 20 ~~~i~l~~~~~~~-~~p~~~~~a~~~~~~~----~~~y~~-~~~~~lr~~ia~~~ 68 (356)
T PRK08056 20 DQLLDFSANINPL-GMPVSLKRAIIDNLDC----AERYPD-VEYRHLHQALARHH 68 (356)
T ss_pred hhEEEeccccCCC-CCCHHHHHHHHHHHHh----cccCcC-ccHHHHHHHHHHHh
Confidence 4689999999999 8888999999887754 346875 47999999999986
No 85
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=97.72 E-value=7.1e-05 Score=55.67 Aligned_cols=57 Identities=7% Similarity=-0.024 Sum_probs=39.3
Q ss_pred CceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHH-HHhhhhCCCCCC
Q psy782 33 KPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAK-LYSSLIERPLLP 96 (100)
Q Consensus 33 ~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~-~~~~~~g~~~~~ 96 (100)
++|+|++|+|++ .|++.+.+ +.+.+. + . +|+++.|.+++|++|++ ++.+.++....+
T Consensus 95 ~~i~l~~g~p~~-~~~~~~~~-~~~~~~-~---~-~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~ 152 (521)
T TIGR03801 95 DIISYVIDQLGF-DPDAFLYE-MCDGII-G---D-NYPVPDRMLPHSEKIVHQYLIQEMCGNKPP 152 (521)
T ss_pred HHHhhcCCCCCC-CCCHHHHH-HHHHhh-c---C-CCCCCCCCHHHHHHHHHHHHHhhccCCCCC
Confidence 479999999999 76666644 444443 3 2 59888999999999986 445544443333
No 86
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=97.71 E-value=0.00011 Score=51.81 Aligned_cols=61 Identities=5% Similarity=0.018 Sum_probs=46.8
Q ss_pred CCCceecCCCC-CCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCC
Q psy782 31 DHKPLNLGQGF-PDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIER 92 (100)
Q Consensus 31 ~~~~i~l~~G~-P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~ 92 (100)
+.++|+|+.|+ |++ .+++.+.+++.+.++........|....|.++||+++++++++.+|.
T Consensus 41 g~~~i~l~~~~~~~~-~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~ 102 (397)
T PRK06939 41 GKEVINFCANNYLGL-ANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGT 102 (397)
T ss_pred CCeEEEeeccCcccc-CCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhCC
Confidence 34689999998 688 78889999999988764211223344579999999999999988775
No 87
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=97.70 E-value=0.00012 Score=51.64 Aligned_cols=61 Identities=10% Similarity=0.090 Sum_probs=49.8
Q ss_pred CCCceecCCCC-CCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCC
Q psy782 31 DHKPLNLGQGF-PDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIER 92 (100)
Q Consensus 31 ~~~~i~l~~G~-P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~ 92 (100)
+.++|+|+.|. |++ .+++.+.+++.++++........|....|.++||+++++++++.+|.
T Consensus 32 g~~~id~~~~~~~g~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~ 93 (385)
T TIGR01825 32 GKEVINLSSNNYLGF-ADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKT 93 (385)
T ss_pred CceEEEeeccCccCC-CCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhCC
Confidence 45789999997 677 78889999999888754323457889999999999999999987664
No 88
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=97.70 E-value=5.4e-05 Score=53.57 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=40.1
Q ss_pred CceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHH
Q psy782 33 KPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLY 86 (100)
Q Consensus 33 ~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~ 86 (100)
..|+|+.|+|++ .+++.+.+++.+.+.. ..+|++. +.++||++||+++
T Consensus 33 ~~~~l~~~~~~~-~~~~~~~~a~~~~~~~----~~~Y~~~-~~~~Lr~~ia~~~ 80 (369)
T PRK08153 33 FRARIGANESGF-GPSPSVIAAMREAAAE----IWKYGDP-ENHDLRHALAAHH 80 (369)
T ss_pred ceeEecCCCCCC-CCCHHHHHHHHHHHHH----hhcCCCC-ccHHHHHHHHHHh
Confidence 457999999999 8888899998887642 4679876 6899999999987
No 89
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=97.69 E-value=7.9e-05 Score=52.48 Aligned_cols=48 Identities=13% Similarity=0.214 Sum_probs=39.7
Q ss_pred CceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHH
Q psy782 33 KPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLY 86 (100)
Q Consensus 33 ~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~ 86 (100)
++++|+.|.|.. .+|+.+.+++.+.+.. ..+|++ .|.++||++||+++
T Consensus 20 ~~~~l~~~~~~~-~~p~~~~~a~~~~~~~----~~~Y~~-~~~~~lr~~ia~~~ 67 (354)
T PRK06358 20 MILDFSANINPL-GVPESLKQAITENLDK----LVEYPD-PDYLELRKRIASFE 67 (354)
T ss_pred ceEEecCCCCCC-CCCHHHHHHHHHHHHh----hhcCCC-ccHHHHHHHHHHHh
Confidence 479999999888 7788899998887642 567965 57999999999987
No 90
>PRK03321 putative aminotransferase; Provisional
Probab=97.66 E-value=7.8e-05 Score=52.20 Aligned_cols=49 Identities=22% Similarity=0.384 Sum_probs=41.5
Q ss_pred CceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHh
Q psy782 33 KPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYS 87 (100)
Q Consensus 33 ~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~ 87 (100)
++|+|+.|.|++ .|++.+.+++.+.+.. ...|+ ..|.++||++||+++.
T Consensus 23 ~~i~l~~~~~~~-~~~~~~~~a~~~~~~~----~~~y~-~~g~~~lr~~ia~~~~ 71 (352)
T PRK03321 23 GAIKLSSNETPF-GPLPSVRAAIARAAAG----VNRYP-DMGAVELRAALAEHLG 71 (352)
T ss_pred cceeccCCCCCC-CCCHHHHHHHHHHHHh----cCcCC-CCcHHHHHHHHHHHhC
Confidence 689999999999 7888999999887752 46785 5799999999999974
No 91
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=97.64 E-value=0.00016 Score=51.20 Aligned_cols=50 Identities=24% Similarity=0.230 Sum_probs=41.5
Q ss_pred CCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHH
Q psy782 31 DHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLY 86 (100)
Q Consensus 31 ~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~ 86 (100)
..++|+|+.|.|.+ .|++.+.+++.+... . ..+|++..| .+||++||+++
T Consensus 35 ~~~~i~l~~~~~~~-~~~~~~~~al~~~~~-~---~~~Y~~~~g-~~lr~~ia~~~ 84 (371)
T PRK05166 35 VPRIAKLGSNENPL-GPSPAVRRAFADIAE-L---LRLYPDPQG-RALREAIAART 84 (371)
T ss_pred CcceEEcCCCCCCC-CCCHHHHHHHHHHHH-H---hhcCCCCcH-HHHHHHHHHHh
Confidence 34789999999988 888899999887543 2 568999999 49999999986
No 92
>PRK09105 putative aminotransferase; Provisional
Probab=97.56 E-value=0.00017 Score=51.16 Aligned_cols=48 Identities=10% Similarity=-0.033 Sum_probs=39.6
Q ss_pred CceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHH
Q psy782 33 KPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLY 86 (100)
Q Consensus 33 ~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~ 86 (100)
++|.|+.|+|++ .||+.+.+++.+.+.. ...|++. +.++||++||+++
T Consensus 44 ~~i~l~~~~~~~-~~~~~~~~a~~~~~~~----~~~Y~~~-~~~~Lr~aia~~~ 91 (370)
T PRK09105 44 GAVFLNANECPL-GPSPAARDAAARSAAL----SGRYDLE-LEDDLRTLFAAQE 91 (370)
T ss_pred CcEEecCCCCCC-CCCHHHHHHHHHHHHH----hcCCCCc-hHHHHHHHHHHHh
Confidence 689999999999 8888999999887654 3468765 4999999999865
No 93
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=97.54 E-value=0.00024 Score=49.90 Aligned_cols=50 Identities=12% Similarity=0.254 Sum_probs=41.3
Q ss_pred CceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHH
Q psy782 33 KPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLY 86 (100)
Q Consensus 33 ~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~ 86 (100)
..++|+.|+|++ .+|+.+.+++.+.+... ..+.|++. +.++||++||+++
T Consensus 23 ~~~~l~~~~~~~-~~p~~~~~a~~~~~~~~--~~~~y~~~-~~~~lr~~ia~~~ 72 (351)
T PRK14807 23 YKYKMDANETPF-ELPEEVIKNIQEIVKSS--QVNIYPDP-TAEKLREELARYC 72 (351)
T ss_pred ceeEccCCCCCC-CCCHHHHHHHHHHhhcC--cccCCCCc-cHHHHHHHHHHHh
Confidence 468999999999 88899999998887653 35779754 5799999999986
No 94
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=97.46 E-value=0.0002 Score=52.95 Aligned_cols=67 Identities=13% Similarity=0.122 Sum_probs=43.8
Q ss_pred CceecCCCCCCC--CCchHHHHHHHHHHHhc-----CCcccCCCCCCCCCHHHHHHHHHHHhhhhC--CCCCCCCCC
Q psy782 33 KPLNLGQGFPDY--ESAPSHVSKGLADAATG-----ENKLLNQYTRGFGHPRIVQAIAKLYSSLIE--RPLLPHQLV 100 (100)
Q Consensus 33 ~~i~l~~G~P~~--~~pp~~l~~a~~~~~~~-----~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g--~~~~~~~eI 100 (100)
++|+|+..+=.+ +..++.+++.....+.. .......|++..|.++||++||+++.+.+| +.++|+ +|
T Consensus 47 g~i~l~~aEN~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe-~I 122 (496)
T PLN02376 47 GIIQMGLAENQLCLDLIKDWVKENPEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPE-RV 122 (496)
T ss_pred ceEEeecchhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCCCcHHHHHHHHHHHHHHhCCCCcCChh-hE
Confidence 689999976433 11134444433321100 112345799999999999999999998878 668887 54
No 95
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=97.36 E-value=0.00033 Score=49.90 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=36.9
Q ss_pred CCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHH
Q psy782 32 HKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLY 86 (100)
Q Consensus 32 ~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~ 86 (100)
.++|+|+.|++++ .|++.+.+++.+. . ..+.|+. .|.++||++||+++
T Consensus 52 ~~~i~l~~n~~p~-~~~~~v~~a~~~~-~----~~~~Yp~-~~~~~lr~~ia~~~ 99 (380)
T PLN03026 52 EDIVKLDANENPY-GPPPEVLEALGNM-K----FPYVYPD-PESRRLRAALAEDS 99 (380)
T ss_pred cceEEccCCCCCC-CCCHHHHHHHHhh-H----hhccCCC-CCHHHHHHHHHHHh
Confidence 4789999999888 7777788877542 1 1356865 57899999999987
No 96
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=97.35 E-value=0.00044 Score=48.54 Aligned_cols=48 Identities=17% Similarity=0.136 Sum_probs=40.2
Q ss_pred CceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHH
Q psy782 33 KPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLY 86 (100)
Q Consensus 33 ~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~ 86 (100)
++|+|+.|+|.+ .|++.+.+++.+.+.. ..|.+..|.++||++||+++
T Consensus 30 ~~i~l~~n~~~~-~~~~~v~~a~~~~~~~-----~~~~p~~g~~~lr~~ia~~~ 77 (359)
T PRK03158 30 KIVKLASNENPY-GPSPKVKEAIAAHLDE-----LALYPDGYAPELRTKVAKHL 77 (359)
T ss_pred ceEEecCCCCCC-CCCHHHHHHHHHHHHH-----hhcCCCCcHHHHHHHHHHHh
Confidence 789999999988 7778899998887653 34666789999999999998
No 97
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=97.33 E-value=0.0011 Score=46.55 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=40.5
Q ss_pred CCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHH
Q psy782 31 DHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLY 86 (100)
Q Consensus 31 ~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~ 86 (100)
..++++|+.|.|++ .|++.+.+++.+.+.. ...|++..| .+||++||+++
T Consensus 31 ~~~~i~l~~~~~~~-~~~~~~~~a~~~~~~~----~~~y~~~~~-~~lr~~ia~~~ 80 (367)
T PRK02731 31 IADIIKLASNENPL-GPSPKAIEAIRAAADE----LHRYPDGSG-FELKAALAEKF 80 (367)
T ss_pred CCceEEecCCCCCC-CCCHHHHHHHHHHHHh----hcCCCCCcH-HHHHHHHHHHh
Confidence 35689999999988 7777888988887653 567976654 79999999987
No 98
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=97.24 E-value=0.0008 Score=47.17 Aligned_cols=49 Identities=12% Similarity=0.266 Sum_probs=39.6
Q ss_pred CCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHH
Q psy782 32 HKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLY 86 (100)
Q Consensus 32 ~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~ 86 (100)
.++|+|+.|++++ .|++.+.+++.+.+.. ..+|++..| ++||++||+++
T Consensus 34 ~~~i~l~~~~~~~-~~~~~~~~~~~~~~~~----~~~y~~~~~-~~lr~~ia~~~ 82 (361)
T PRK00950 34 ESIIKLGSNENPL-GPSPKAVEAIEKELSK----IHRYPEPDA-PELREALSKYT 82 (361)
T ss_pred cceEEccCCCCCC-CCCHHHHHHHHHHHHh----hcCCCCCCH-HHHHHHHHHHh
Confidence 3789999999988 7777788888777653 457877655 99999999987
No 99
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=97.24 E-value=0.00031 Score=51.24 Aligned_cols=65 Identities=11% Similarity=0.084 Sum_probs=46.5
Q ss_pred CceecCCCCCCCCCchHHHHHHHHHHHhc------C---CcccCCCCCCCCCHHHHHHHHHHHhhhhC--CCCCCCCCC
Q psy782 33 KPLNLGQGFPDYESAPSHVSKGLADAATG------E---NKLLNQYTRGFGHPRIVQAIAKLYSSLIE--RPLLPHQLV 100 (100)
Q Consensus 33 ~~i~l~~G~P~~~~pp~~l~~a~~~~~~~------~---~~~~~~Y~~~~G~~~LR~aia~~~~~~~g--~~~~~~~eI 100 (100)
++|+||..+ +. ..-+.+.+.+.+.... . ......|++..|.++||++||+++.+.+| +.++|+ +|
T Consensus 48 g~i~l~~ae-N~-l~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~-~I 123 (447)
T PLN02607 48 GVIQMGLAE-NQ-VSFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPD-RI 123 (447)
T ss_pred ceEEEechh-hh-hhHHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCCcCHH-He
Confidence 589999987 33 4567777777665331 1 11234589999999999999999998777 457776 44
No 100
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=97.23 E-value=0.00058 Score=49.80 Aligned_cols=57 Identities=12% Similarity=-0.046 Sum_probs=47.2
Q ss_pred cCCCceecCCCCC--CCCCch---HHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhh
Q psy782 30 LDHKPLNLGQGFP--DYESAP---SHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLI 90 (100)
Q Consensus 30 ~~~~~i~l~~G~P--~~~~pp---~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~ 90 (100)
+..+++.|..|+| |+ .++ ..+.++...++..+ ..+|++..|.++||++|++++...+
T Consensus 9 ~g~n~~~l~~~~v~iDl-ltds~t~ams~~~~~a~~~g---d~~Y~~~~g~~~Leeaia~~~g~~~ 70 (431)
T cd00617 9 AGYNVFLLRSEDVYIDL-LTDSGTGAMSDYQWAAMMLG---DEAYAGSKSFYDLEDAVQDLFGFKH 70 (431)
T ss_pred cCCCEEeCCCCCcCCCC-CCCCCcHHHHHHHHHHHHhC---CCccCCCCCHHHHHHHHHHHHCCCe
Confidence 4568999999999 77 777 47777777777766 5679999999999999999987653
No 101
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=97.20 E-value=0.00095 Score=47.30 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=44.0
Q ss_pred CCCceecCCCCC-CCCCchHHHHHHHHHHHhcCCcccCCCCCCC---CC----HHHHHHHHHHHhh
Q psy782 31 DHKPLNLGQGFP-DYESAPSHVSKGLADAATGENKLLNQYTRGF---GH----PRIVQAIAKLYSS 88 (100)
Q Consensus 31 ~~~~i~l~~G~P-~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~---G~----~~LR~aia~~~~~ 88 (100)
..++|+|+.|++ ++ .+++++.+++.+++++. ..+|+++. |. .+||++||+++..
T Consensus 37 g~~~i~~~~~~~lg~-~~~~~v~~~~~~~~~~~---~~~~~~s~~~~G~~~~~~~le~~ia~~~g~ 98 (393)
T TIGR01822 37 GREVLNFCANNYLGL-SSHPDLIQAAKDALDEH---GFGMSSVRFICGTQDIHKELEAKIAAFLGT 98 (393)
T ss_pred CceEEEeeCCCcccc-CCCHHHHHHHHHHHHHh---CCCCCCcCcccCChHHHHHHHHHHHHHhCC
Confidence 457899999995 88 77788999999988764 35788888 97 8899999988865
No 102
>PRK08637 hypothetical protein; Provisional
Probab=97.16 E-value=0.00074 Score=48.10 Aligned_cols=61 Identities=15% Similarity=0.103 Sum_probs=37.0
Q ss_pred ceecCCCCCCCCCchHHHHHHHHHHHhc-CCcccCCCCCCCCCHHHHHHHHHHHhhhhCCCCCC
Q psy782 34 PLNLGQGFPDYESAPSHVSKGLADAATG-ENKLLNQYTRGFGHPRIVQAIAKLYSSLIERPLLP 96 (100)
Q Consensus 34 ~i~l~~G~P~~~~pp~~l~~a~~~~~~~-~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~ 96 (100)
-++.++|.-..+..+ .+.+++.+++++ .....++|+++.|.++||++|++++.+.+ ..+++
T Consensus 5 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~-~~~~~ 66 (388)
T PRK08637 5 KYNATIGMATEKGGP-MYLSSLQDLLNDLTPDEIFPYAPPQGIPELRDLWQEKMLREN-PSLSG 66 (388)
T ss_pred ceecceeeEecCCCc-chHHHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHHhccC-ccccc
Confidence 356667754332111 333333333332 11247899999999999999999998754 33443
No 103
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=96.98 E-value=0.003 Score=43.40 Aligned_cols=55 Identities=29% Similarity=0.352 Sum_probs=40.7
Q ss_pred eecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCC
Q psy782 35 LNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIER 92 (100)
Q Consensus 35 i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~ 92 (100)
|+|+.|.+++ .+.+.+..+..+. ........|.+..|..+|++++++++...+|.
T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 55 (350)
T cd00609 1 IDLSIGEPDF-PPPPEVLEALAAA--ALRAGLLGYYPDPGLPELREAIAEWLGRRGGV 55 (350)
T ss_pred CCCCCCCCCC-CCCHHHHHHHHHH--hhccCCCCCCCCCCcHHHHHHHHHHHHHHhCC
Confidence 6899999988 6665555555441 11123678999999999999999999887664
No 104
>KOG0258|consensus
Probab=96.76 E-value=0.0076 Score=43.64 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=39.5
Q ss_pred chHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCCCCCCCCCC
Q psy782 47 APSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIERPLLPHQLV 100 (100)
Q Consensus 47 pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~eI 100 (100)
|.+.+ +.+.+.+...+-....|+..+|++-+|+.+|++..++-|++.+|+ +|
T Consensus 88 p~Dai-~RA~~~L~~~gGs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~-dI 139 (475)
T KOG0258|consen 88 PTDAI-KRAKRILNDCGGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPE-DI 139 (475)
T ss_pred CHHHH-HHHHHHHHhcCCcccccccccCChhHHHHHHHHHHhccCCCCCHH-He
Confidence 33444 444566666433456799999999999999999999989878887 65
No 105
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=96.36 E-value=0.015 Score=40.46 Aligned_cols=56 Identities=11% Similarity=0.011 Sum_probs=35.5
Q ss_pred cCCCceecCCCCC-CCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHH----HHHHHHHHH
Q psy782 30 LDHKPLNLGQGFP-DYESAPSHVSKGLADAATGENKLLNQYTRGFGHPR----IVQAIAKLY 86 (100)
Q Consensus 30 ~~~~~i~l~~G~P-~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~----LR~aia~~~ 86 (100)
.+.++|+|+.|+| ++ .+++.+.+++.+.+++.+.....|....|..+ ||++|++++
T Consensus 14 ~g~~~id~~~~~~~g~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~ 74 (360)
T TIGR00858 14 DGRRLLNFSSNDYLGL-ASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWK 74 (360)
T ss_pred CCceEEecccCCcccC-CCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHh
Confidence 3456899999976 34 46688999999888763211223433455544 666666655
No 106
>PLN02822 serine palmitoyltransferase
Probab=96.22 E-value=0.01 Score=43.84 Aligned_cols=56 Identities=13% Similarity=0.055 Sum_probs=43.3
Q ss_pred CCceecCCC-CCCCCCchHHHHHHHHHHHhcCCcc----cCCCCCCCCCHHHHHHHHHHHhh
Q psy782 32 HKPLNLGQG-FPDYESAPSHVSKGLADAATGENKL----LNQYTRGFGHPRIVQAIAKLYSS 88 (100)
Q Consensus 32 ~~~i~l~~G-~P~~~~pp~~l~~a~~~~~~~~~~~----~~~Y~~~~G~~~LR~aia~~~~~ 88 (100)
.++|+|+.| .+++ ..++++++++.+++++.+.. -..|++..++.+|+++||+++..
T Consensus 109 ~~~id~~s~~~lgl-~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~ 169 (481)
T PLN02822 109 KDVVNFASANYLGL-IGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGT 169 (481)
T ss_pred ceEEEeECCCcCCC-CCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhCC
Confidence 468999988 5588 78899999999999873211 12477777799999999999853
No 107
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=95.55 E-value=0.018 Score=40.19 Aligned_cols=44 Identities=18% Similarity=0.198 Sum_probs=31.8
Q ss_pred CCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHH
Q psy782 32 HKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLY 86 (100)
Q Consensus 32 ~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~ 86 (100)
.++++|+.|.|.. .+| +.+ .......+|++..| ++||++||+++
T Consensus 17 ~~~~~~~~~~~~~-~~~--~~~-------~~~~~~~~y~~~~~-~~lr~~la~~~ 60 (330)
T TIGR01140 17 EDWLDFSTGINPL-GPP--VPP-------IPASAWARYPDPEY-DELRAAAAAYY 60 (330)
T ss_pred hheeEccccCCCC-CCC--hhh-------cchHHHhhCCCccH-HHHHHHHHHHh
Confidence 4689999999877 555 111 11123678988876 99999999986
No 108
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=95.48 E-value=0.06 Score=37.83 Aligned_cols=60 Identities=10% Similarity=-0.003 Sum_probs=40.8
Q ss_pred CCCceecCCCCC-CCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhC
Q psy782 31 DHKPLNLGQGFP-DYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIE 91 (100)
Q Consensus 31 ~~~~i~l~~G~P-~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g 91 (100)
+.++|+|+.|.+ .+ .+++.+.+++.+.+.........|....|..++++.+.+.+.+.+|
T Consensus 38 g~~~id~~~~~~~g~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~ 98 (385)
T PRK05958 38 GRRMLNFASNDYLGL-ARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFG 98 (385)
T ss_pred CceEEEeeCCCcccC-CCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhC
Confidence 456899999964 44 5678899999988865321123455556777777777777766655
No 109
>KOG0634|consensus
Probab=95.11 E-value=0.022 Score=41.67 Aligned_cols=69 Identities=16% Similarity=0.158 Sum_probs=42.9
Q ss_pred hhHHHHHHHhhcC--CCceecCCCCCCCC-CchHHHHHH-------------------HHHHHhcCC---cccCCCCCCC
Q psy782 19 YSVWVEFIQLSLD--HKPLNLGQGFPDYE-SAPSHVSKG-------------------LADAATGEN---KLLNQYTRGF 73 (100)
Q Consensus 19 ~~~~~~~~~~~~~--~~~i~l~~G~P~~~-~pp~~l~~a-------------------~~~~~~~~~---~~~~~Y~~~~ 73 (100)
.++++.+.+.... .++|+|+.|.|+++ +|...+.-. +.+..+++. ...+||+++.
T Consensus 21 ~~p~~~~~~~~s~~~i~~i~lagGlPnp~~fp~~~~s~~p~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~s~alQYg~s~ 100 (472)
T KOG0634|consen 21 LSPLRALGDIKSASPISIISLAGGLPNPDYFPIRSDSIKPQGSWKKENGKKLNNVTFAFENEASENTLPLSRALQYGQSS 100 (472)
T ss_pred cChHHHhhhHhhcCCCceEEecCCCCCCCcccccccccccccCccccccccccceeeeccccCCcccchhhhhhcccccc
Confidence 3455555443322 24799999999887 776433211 111111110 1468999999
Q ss_pred CCHHHHHHHHHHHh
Q psy782 74 GHPRIVQAIAKLYS 87 (100)
Q Consensus 74 G~~~LR~aia~~~~ 87 (100)
|.++|+..|.++..
T Consensus 101 G~peLl~fik~h~~ 114 (472)
T KOG0634|consen 101 GIPELLLFIKDHNR 114 (472)
T ss_pred CcHHHHHHHHHhcc
Confidence 99999999998654
No 110
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=95.09 E-value=0.06 Score=38.47 Aligned_cols=49 Identities=22% Similarity=0.371 Sum_probs=41.2
Q ss_pred CceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHh
Q psy782 33 KPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYS 87 (100)
Q Consensus 33 ~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~ 87 (100)
++++|+..+=.+ .||+.+.+++.+.+. . .+.|+.. ...+||+++|+++.
T Consensus 23 ~~i~LssNenP~-gp~~~~~~~~~~~~~-~---~~rYPd~-~~~~l~~a~a~~~~ 71 (356)
T COG0079 23 GIIKLSSNENPY-GPPPKVIEAIRAALD-K---LNRYPDP-DYRELRAALAEYYG 71 (356)
T ss_pred cceeecCCCCCC-CCCHHHHHHHHHHHH-h---hccCCCC-cHHHHHHHHHHHhC
Confidence 589999998777 777888888888776 3 7889877 78999999999885
No 111
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=95.06 E-value=0.074 Score=39.31 Aligned_cols=55 Identities=7% Similarity=-0.010 Sum_probs=42.8
Q ss_pred ecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCC---CCCCCCHHHHHHHHHHHhhhhCCC
Q psy782 36 NLGQGFPDYESAPSHVSKGLADAATGENKLLNQY---TRGFGHPRIVQAIAKLYSSLIERP 93 (100)
Q Consensus 36 ~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y---~~~~G~~~LR~aia~~~~~~~g~~ 93 (100)
-+|+|.|++ .+|+.+.+++.+...-. ..+.| +..+|..+++.++.+++++.+|++
T Consensus 72 ~~g~G~~~~-~~~p~i~~~~~~~~~~~--~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~ 129 (481)
T PRK04366 72 FYPLGSCTM-KYNPKINEKVARLPGFA--ELHPLQPEETVQGALELMYELQEWLKEITGMD 129 (481)
T ss_pred eecCcccCC-CCCHHHHHHHHhCcchh--cCCCCCChhhhhHHHHHHHHHHHHHHHHhCCC
Confidence 388899999 77888888776642111 36778 568899999999999999998874
No 112
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=94.83 E-value=0.083 Score=38.33 Aligned_cols=68 Identities=21% Similarity=0.150 Sum_probs=42.3
Q ss_pred hHHHHHHHhhcCC-----CceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCC--CCHHHHHHHHHHH---hhh
Q psy782 20 SVWVEFIQLSLDH-----KPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGF--GHPRIVQAIAKLY---SSL 89 (100)
Q Consensus 20 ~~~~~~~~~~~~~-----~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~--G~~~LR~aia~~~---~~~ 89 (100)
.+++.+.++.... .++.||.|.|++ ..|..+.+++... +. ..+|.+.. -.+.+|++++++. ++.
T Consensus 51 ~v~~~~~~~~~~~~~~~~~~~~lg~g~~~~-~~p~~~~~~~~~~--~~---~~~y~~~~~~~~~g~~~~~~e~~~~la~l 124 (447)
T PRK00451 51 ELLRHLRELAAKNKTAEEYPSFLGAGAYDH-YIPAVVDHIISRS--EF---YTAYTPYQPEISQGTLQAIFEYQTMICEL 124 (447)
T ss_pred HHHHHHHHHHhcCCCcCcCcccCcccccCC-cCcHHHHHHHhch--hH---HHhcCCCCCccchHHHHHHHHHHHHHHHH
Confidence 4455555555433 578999999999 8888777666433 11 34465511 1244788887444 777
Q ss_pred hCCC
Q psy782 90 IERP 93 (100)
Q Consensus 90 ~g~~ 93 (100)
+|++
T Consensus 125 ~g~~ 128 (447)
T PRK00451 125 TGMD 128 (447)
T ss_pred hCCC
Confidence 7765
No 113
>PLN02721 threonine aldolase
Probab=94.26 E-value=0.031 Score=38.83 Aligned_cols=51 Identities=14% Similarity=0.203 Sum_probs=35.6
Q ss_pred CceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhh
Q psy782 33 KPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSL 89 (100)
Q Consensus 33 ~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~ 89 (100)
.+++|+.+.|.. |++.+.+++.+. ... .....|++. ..+||++||+++...
T Consensus 6 ~~~~~~~~~~~~--~~~~~~~a~~~~-~~~-~~~~~~~~~--~~~l~~~la~~~~~~ 56 (353)
T PLN02721 6 RVVDLRSDTVTK--PTDAMRAAMANA-EVD-DDVLGYDPT--ALRLEEEMAKIFGKE 56 (353)
T ss_pred hhhhhhcccccC--CCHHHHHHHHhc-cCC-CcccCCCHH--HHHHHHHHHHHhCCc
Confidence 468999999987 567777777654 111 124455544 699999999999654
No 114
>PRK08354 putative aminotransferase; Provisional
Probab=94.21 E-value=0.13 Score=35.66 Aligned_cols=47 Identities=15% Similarity=0.277 Sum_probs=34.9
Q ss_pred CCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHh
Q psy782 32 HKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYS 87 (100)
Q Consensus 32 ~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~ 87 (100)
.++|+|+.|+... + |+.+.+++.++++. ..+|+. ...||++||+++.
T Consensus 8 ~~~i~l~~~~np~-~-p~~~~~a~~~~~~~----~~~yp~---~~~l~~~ia~~~~ 54 (311)
T PRK08354 8 EGLIDFSASVNPY-P-PEWLDEMFERAKEI----SGRYTY---YEWLEEEFSKLFG 54 (311)
T ss_pred cceeEecCCCCCC-C-CHHHHHHHHHHHHH----hhcCCC---hHHHHHHHHHHHC
Confidence 3689999997555 4 57888888877543 457864 4679999998875
No 115
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=94.13 E-value=0.051 Score=38.24 Aligned_cols=42 Identities=14% Similarity=0.280 Sum_probs=30.9
Q ss_pred CceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHH
Q psy782 33 KPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLY 86 (100)
Q Consensus 33 ~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~ 86 (100)
+.|+|+.+++.+ .|+..+ . +. . .+.|+.. +.++||++||+++
T Consensus 32 ~~~~l~~ne~~~-~~~~~~-----~-~~-~---~~~Yp~~-~~~~Lr~aia~~~ 73 (354)
T PRK04635 32 GDIWINANESPF-NNEYKL-----D-LA-R---LNRYPEC-QPPELINAYSAYA 73 (354)
T ss_pred CcEEeeCCCCCC-CCChhh-----h-hH-H---hccCCCC-CHHHHHHHHHHHh
Confidence 569999999988 666433 1 11 2 5679776 6899999999875
No 116
>PLN02483 serine palmitoyltransferase
Probab=93.07 E-value=0.1 Score=38.76 Aligned_cols=51 Identities=14% Similarity=0.070 Sum_probs=35.1
Q ss_pred cCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhh
Q psy782 37 LGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSS 88 (100)
Q Consensus 37 l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~ 88 (100)
||.+.|++ .+++.+.+++.+.-.......+.|+...++.+|+++||+++..
T Consensus 111 Lgl~~~~~-~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~ 161 (489)
T PLN02483 111 LGFAAADE-YCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGK 161 (489)
T ss_pred cCcCCCCH-HHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCC
Confidence 44555666 6667888887765322111235588899999999999999864
No 117
>PLN02672 methionine S-methyltransferase
Probab=92.73 E-value=0.29 Score=39.86 Aligned_cols=47 Identities=26% Similarity=0.168 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCCCCCCCCCC
Q psy782 51 VSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIERPLLPHQLV 100 (100)
Q Consensus 51 l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~eI 100 (100)
+...+...+++. ..+-|.++.|...+|+.||.++...++++++++ +|
T Consensus 406 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 452 (1082)
T PLN02672 406 FLAYLASALKGL--SYFPCEPPAGSKRFRNLIAGFMRIYHHIPLTPD-NV 452 (1082)
T ss_pred HHHHHHHHHccC--CCCCCCCCccchHHHHHHHHHHHHhcCCcCCcc-ce
Confidence 345556667766 378899999999999999999999999999998 54
No 118
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=91.76 E-value=0.98 Score=32.82 Aligned_cols=71 Identities=24% Similarity=0.259 Sum_probs=47.8
Q ss_pred hcccchhHHHHHHHhh---cCCCceecCCCCC-CCC-Cch--HHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHH
Q psy782 14 FEASVYSVWVEFIQLS---LDHKPLNLGQGFP-DYE-SAP--SHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLY 86 (100)
Q Consensus 14 ~~~~~~~~~~~~~~~~---~~~~~i~l~~G~P-~~~-~pp--~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~ 86 (100)
+.....+++-.+.+.- .+++.|+|++|.= |.+ .+| ..+++|-.+.+.+. ....|-+..|.+.+++++++.+
T Consensus 5 i~~~p~DpIlgL~e~f~~D~R~~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~--~~k~Yl~i~G~~~f~~~~~~ll 82 (396)
T COG1448 5 IEAAPADPILGLKEAFKADPRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQE--KTKNYLPIEGLPEFLEAVQKLL 82 (396)
T ss_pred cccCCCCchhHHHHHHhcCCCcCeeeeeeeeeeCCCCCcchhHHHHHHHHHhhccc--cccccCCcCCcHHHHHHHHHHh
Confidence 3344455555555532 2457899999942 222 334 67777666655544 4677999999999999999887
No 119
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=91.34 E-value=0.37 Score=34.75 Aligned_cols=53 Identities=8% Similarity=-0.013 Sum_probs=39.2
Q ss_pred CCceecCCCCCCCC--CchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHh
Q psy782 32 HKPLNLGQGFPDYE--SAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYS 87 (100)
Q Consensus 32 ~~~i~l~~G~P~~~--~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~ 87 (100)
...++|..|.+... -.++.+.+++.+.+.+. .+.+.+..|..+|+++|++++.
T Consensus 48 ~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~---~~~~~~~~~~~~lae~l~~~~~ 102 (423)
T TIGR00713 48 NEYIDYVLSWGPLILGHAHPRVVEAVKEALERG---TSYGAPTEAEILLAKEIISRVP 102 (423)
T ss_pred CEEEEccccccccccCCCCHHHHHHHHHHHHhC---CcCCCCCHHHHHHHHHHHHhCC
Confidence 35789988876542 45688889998888765 3323366788999999998763
No 120
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=91.25 E-value=0.82 Score=31.68 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=35.9
Q ss_pred CchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCCC
Q psy782 46 SAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIERP 93 (100)
Q Consensus 46 ~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~ 93 (100)
.++..+.+.+...+... ...|....|..+|++++++++.+.+|.+
T Consensus 10 ~~~~~~~~~~~~~~n~~---~~~y~~~~~~~~le~~~~~~~~~~~g~~ 54 (345)
T cd06450 10 DPPALLLEMLTSAKNAI---DFTWDESPAATEMEAEVVNWLAKLFGLP 54 (345)
T ss_pred cHHHHHHHHHHHhcCCC---CcccccCchhHHHHHHHHHHHHHHhCCC
Confidence 44577777777766554 4569999999999999999999988876
No 121
>PRK10534 L-threonine aldolase; Provisional
Probab=90.35 E-value=0.4 Score=33.26 Aligned_cols=38 Identities=11% Similarity=0.013 Sum_probs=28.4
Q ss_pred CchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHh
Q psy782 46 SAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYS 87 (100)
Q Consensus 46 ~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~ 87 (100)
.|++.+.+++.++. .. ...|++..+..+|+++||+++.
T Consensus 11 ~p~~~~~~a~~~~~-~~---~~~Y~~~~~~~~L~~~la~~~g 48 (333)
T PRK10534 11 RPSRAMLEAMMAAP-VG---DDVYGDDPTVNALQDYAAELSG 48 (333)
T ss_pred CCCHHHHHHHHhcc-CC---CcccCCCHHHHHHHHHHHHHhC
Confidence 45677888876643 33 4679888899999999999864
No 122
>KOG0256|consensus
Probab=86.43 E-value=0.89 Score=33.47 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=26.6
Q ss_pred cCCCCCCCCCHHHHHHHHHHHhhhhC--CCCCCCC
Q psy782 66 LNQYTRGFGHPRIVQAIAKLYSSLIE--RPLLPHQ 98 (100)
Q Consensus 66 ~~~Y~~~~G~~~LR~aia~~~~~~~g--~~~~~~~ 98 (100)
...|.+-.|++.+|+++|+++.+..| +.++|++
T Consensus 114 la~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~ 148 (471)
T KOG0256|consen 114 LAMFQDYHGLPSFRQAVAEFMERARGNRVKFDPER 148 (471)
T ss_pred HhhcccccCchHHHHHHHHHHHHHhCCCCccCccc
Confidence 45799999999999999999977655 3467763
No 123
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=84.00 E-value=2.5 Score=30.01 Aligned_cols=56 Identities=11% Similarity=0.033 Sum_probs=38.1
Q ss_pred CCceecCCCCCCCC-Cc-hHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCC
Q psy782 32 HKPLNLGQGFPDYE-SA-PSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIER 92 (100)
Q Consensus 32 ~~~i~l~~G~P~~~-~p-p~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~ 92 (100)
...|+|..|.+... .+ .+.+.+++.+.++... +....+..++++++++++.+..|.
T Consensus 39 ~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~~~-----~~~~~~~~~~~~~la~~l~~~~~~ 96 (396)
T PRK02627 39 KEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLI-----HTSNLYYIEPQEELAEKLVELSGM 96 (396)
T ss_pred CEEEECCccHHhccCCCCCHHHHHHHHHHHhhcc-----ccccccCCHHHHHHHHHHHhhcCC
Confidence 35799999977543 33 3788888888876541 112233478999999999876543
No 124
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=81.44 E-value=2.3 Score=30.94 Aligned_cols=52 Identities=12% Similarity=0.058 Sum_probs=37.3
Q ss_pred CCceecCCCCCCCC--CchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHH
Q psy782 32 HKPLNLGQGFPDYE--SAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLY 86 (100)
Q Consensus 32 ~~~i~l~~G~P~~~--~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~ 86 (100)
...++|..|.+... ..++.+.+++.+.++.. ...|.+..+..+|.+.|++.+
T Consensus 50 ~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~~---~~~~~~~~~~~~la~~L~~~~ 103 (426)
T PRK00062 50 NEYIDYVGSWGPMILGHAHPEVVEAVIEAAEKG---LSFGAPTELEVELAELVIELV 103 (426)
T ss_pred CEEEEcccchhhhhcCCCCHHHHHHHHHHHHhC---CcCCCCCHHHHHHHHHHHHhC
Confidence 45899999977542 45678889998888775 345666777777777777654
No 125
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=78.24 E-value=5.7 Score=28.26 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=39.9
Q ss_pred CCceecCCCCC--CCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCC
Q psy782 32 HKPLNLGQGFP--DYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIER 92 (100)
Q Consensus 32 ~~~i~l~~G~P--~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~ 92 (100)
...|+|..|.. .....++.+.+++.+.+.. ...|+...|..++..++++.+.+.+|.
T Consensus 36 ~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~----~~~~~~~~~~~~~~~~l~~~l~~~~~~ 94 (413)
T cd00610 36 NRYLDFLSGIGVLNLGHNHPEVVEALKEQLAK----LTHFSLGFFYNEPAVELAELLLALTPE 94 (413)
T ss_pred CEEEEcCccHHhhccCCCCHHHHHHHHHHHHh----CcCccCcccCCHHHHHHHHHHHHhCCC
Confidence 45799988744 2312567788888888854 346666556778888888888887664
No 126
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=77.90 E-value=2.7 Score=29.34 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=26.6
Q ss_pred CceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhh
Q psy782 33 KPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSS 88 (100)
Q Consensus 33 ~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~ 88 (100)
++|+|+.++..+.+++..+.+ .. ...|+. |..+||++||+++..
T Consensus 21 ~~i~l~~ne~p~~~~~~~~~~---~~-------~~~yp~--~~~~Lr~~ia~~~~~ 64 (330)
T PRK05664 21 DWLDLSTGIAPWPWPVPAIPA---DA-------WARLPE--TDDGLEAAARAYYGA 64 (330)
T ss_pred HheeecCCcCCCCCCCcccCH---HH-------HHhCCC--ChHHHHHHHHHHhCC
Confidence 579999994333133333322 11 223753 458999999999853
No 127
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=76.80 E-value=3.1 Score=29.23 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=30.3
Q ss_pred cCCCCCCCCCchHHHHHHHHHHHhcCCc--ccCCCCC----CCCCHHHHHHHHHHHh
Q psy782 37 LGQGFPDYESAPSHVSKGLADAATGENK--LLNQYTR----GFGHPRIVQAIAKLYS 87 (100)
Q Consensus 37 l~~G~P~~~~pp~~l~~a~~~~~~~~~~--~~~~Y~~----~~G~~~LR~aia~~~~ 87 (100)
|..+...+ ++|+.+.+++.+.++.... ....|.. ..+..+||+.|++++.
T Consensus 3 ld~a~~~~-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 58 (376)
T TIGR01977 3 FDNAATTY-PKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFN 58 (376)
T ss_pred ccCcccCC-CCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhC
Confidence 44444445 5678888888888765410 1122432 2566788888888774
No 128
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=75.92 E-value=4.2 Score=28.02 Aligned_cols=37 Identities=16% Similarity=0.333 Sum_probs=25.4
Q ss_pred chHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHh
Q psy782 47 APSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYS 87 (100)
Q Consensus 47 pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~ 87 (100)
|++.+.+++.+.+... ..|.+..+..+|++.+++++.
T Consensus 10 ~~~~v~~a~~~~~~~~----~~~~~~~~~~~l~~~~a~~~g 46 (338)
T cd06502 10 PTPEMLEAMAAANVGD----DVYGEDPTTAKLEARAAELFG 46 (338)
T ss_pred CCHHHHHHHHhcccCC----cccCCCHHHHHHHHHHHHHhC
Confidence 5677888887755322 367666777788888877764
No 129
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=75.62 E-value=3.9 Score=29.19 Aligned_cols=55 Identities=15% Similarity=0.120 Sum_probs=34.0
Q ss_pred CCceecCCCCCCCC-Cc-hHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhC
Q psy782 32 HKPLNLGQGFPDYE-SA-PSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIE 91 (100)
Q Consensus 32 ~~~i~l~~G~P~~~-~p-p~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g 91 (100)
...|+|..|.+... .+ .+.+.+++.+.+++.......|....+ .++++++.+.+|
T Consensus 43 ~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~~~-----~~la~~l~~~~~ 99 (398)
T PRK03244 43 KEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHVSNLFATEPQ-----IALAERLVELLG 99 (398)
T ss_pred CEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccCccCccCCHHH-----HHHHHHHHHhCC
Confidence 35799998865432 33 588899999888764322345754433 355555555444
No 130
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=72.00 E-value=10 Score=26.19 Aligned_cols=45 Identities=7% Similarity=-0.031 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCC
Q psy782 48 PSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIER 92 (100)
Q Consensus 48 p~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~ 92 (100)
++++.+++++.++........|....|..++++++.+.+.+.+|.
T Consensus 17 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~ 61 (349)
T cd06454 17 HPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGK 61 (349)
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCC
Confidence 466888888888654111122433445555555555555555453
No 131
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=70.30 E-value=14 Score=25.93 Aligned_cols=56 Identities=13% Similarity=0.092 Sum_probs=34.0
Q ss_pred CCceecCCCCCCCC--CchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCC
Q psy782 32 HKPLNLGQGFPDYE--SAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIER 92 (100)
Q Consensus 32 ~~~i~l~~G~P~~~--~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~ 92 (100)
...|+|..|.+..- ..++.+.+++.+.+.........| ..+.++++++++.+.+|.
T Consensus 27 ~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~la~~~g~ 84 (379)
T TIGR00707 27 KEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHVSNLY-----YTEPQEELAEKLVEHSGA 84 (379)
T ss_pred CEEEEcCcchhhccCCCCCHHHHHHHHHHHhhcccccccc-----CCHHHHHHHHHHHhhCCC
Confidence 45799999854221 334788888888877642111223 335667777777666554
No 132
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=67.75 E-value=14 Score=27.25 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=29.5
Q ss_pred CceecCCCCCCCC-C----chHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhh
Q psy782 33 KPLNLGQGFPDYE-S----APSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSS 88 (100)
Q Consensus 33 ~~i~l~~G~P~~~-~----pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~ 88 (100)
.+.+|+.|.|+.. . +.+++ +++.+.+... ...|++. ..+|++++|+++..
T Consensus 24 ~~~~~~~~~~~ip~~~~~~~~~~~-~a~~~~~~~~---~~~~G~~--~~~fe~~lA~~~g~ 78 (438)
T PRK15407 24 APKPFVPGKSPIPPSGKVIDAKEL-QNLVDASLDF---WLTTGRF--NDAFEKKLAEFLGV 78 (438)
T ss_pred ccccccCCCCCCCcCccCCCHHHH-HHHHHHHHhC---cccCChh--HHHHHHHHHHHhCC
Confidence 4567899999663 1 12334 3344445443 3333322 48899999999854
No 133
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=66.29 E-value=6.8 Score=28.23 Aligned_cols=41 Identities=10% Similarity=0.075 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHhcCC----cccCCCCCCCCCHHHHHHHHHHHhh
Q psy782 48 PSHVSKGLADAATGEN----KLLNQYTRGFGHPRIVQAIAKLYSS 88 (100)
Q Consensus 48 p~~l~~a~~~~~~~~~----~~~~~Y~~~~G~~~LR~aia~~~~~ 88 (100)
.+++++++.+++++.+ ..-..|+...++.+|+++||+++..
T Consensus 14 ~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~ 58 (392)
T PLN03227 14 SPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGT 58 (392)
T ss_pred CHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCC
Confidence 3578888888876611 0022388788899999999998854
No 134
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=65.56 E-value=6.3 Score=25.60 Aligned_cols=46 Identities=11% Similarity=0.051 Sum_probs=33.0
Q ss_pred CceecCCCCCCCCCchHHHHHHHHHHHhcCCc----ccCCCCCCCCCHHHH
Q psy782 33 KPLNLGQGFPDYESAPSHVSKGLADAATGENK----LLNQYTRGFGHPRIV 79 (100)
Q Consensus 33 ~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~----~~~~Y~~~~G~~~LR 79 (100)
.+|+.+.|+|.. ...+++.+.+.++-.++-. +.-..+...|...|+
T Consensus 26 RCIS~S~GNPT~-lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~ 75 (180)
T PF14097_consen 26 RCISQSAGNPTP-LSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALE 75 (180)
T ss_pred EEEeccCCCCCc-CCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHH
Confidence 589999999999 9999999999887655321 122345566655554
No 135
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=63.49 E-value=6.4 Score=22.58 Aligned_cols=20 Identities=5% Similarity=-0.019 Sum_probs=16.9
Q ss_pred CCCCCCCHHHHHHHHHHHhh
Q psy782 69 YTRGFGHPRIVQAIAKLYSS 88 (100)
Q Consensus 69 Y~~~~G~~~LR~aia~~~~~ 88 (100)
-.+..|+.+|+++|++++..
T Consensus 17 ~~~s~~~~~L~~~I~~Rl~~ 36 (86)
T cd06409 17 LRPSESLEELRTLISQRLGD 36 (86)
T ss_pred ecCCCCHHHHHHHHHHHhCC
Confidence 35688999999999999854
No 136
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=63.28 E-value=13 Score=26.28 Aligned_cols=51 Identities=18% Similarity=0.137 Sum_probs=31.9
Q ss_pred ceecCCCCCCCCCchHHHHHHHHHHHhcCCcc-cCCCCCCCCC----HHHHHHHHHHH
Q psy782 34 PLNLGQGFPDYESAPSHVSKGLADAATGENKL-LNQYTRGFGH----PRIVQAIAKLY 86 (100)
Q Consensus 34 ~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~-~~~Y~~~~G~----~~LR~aia~~~ 86 (100)
.+.|..+-+.+ +|+.+.+++.+.+...... ...|....|. .+||+.|++++
T Consensus 18 ~~yl~~~~~~~--~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~ 73 (397)
T TIGR01976 18 RVFFDNPAGTQ--IPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLL 73 (397)
T ss_pred eEEecCCccCC--CCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 68888877776 5677788888877653111 1236555454 46666666665
No 137
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=60.97 E-value=35 Score=24.83 Aligned_cols=56 Identities=5% Similarity=0.020 Sum_probs=36.0
Q ss_pred CceecCCCCCCCC--CchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCC
Q psy782 33 KPLNLGQGFPDYE--SAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIER 92 (100)
Q Consensus 33 ~~i~l~~G~P~~~--~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~ 92 (100)
..++|..|..... --.+.+.+++.+.+.+. .+.+....+.+.. .++|+++.+..+.
T Consensus 42 ~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~~---~~~~~~~~~~~~~-~~la~~l~~~~~~ 99 (425)
T PRK08088 42 EYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKL---SHTCFQVLAYEPY-LELCEKMNQKVPG 99 (425)
T ss_pred EEEEcCCchhhcCCCCCCHHHHHHHHHHHhhC---CCccccccCCHHH-HHHHHHHHHhCCC
Confidence 4788888866551 22577888888888765 2333344455554 4889888775554
No 138
>PRK10347 cell filamentation protein Fic; Provisional
Probab=59.28 E-value=19 Score=23.89 Aligned_cols=69 Identities=12% Similarity=0.166 Sum_probs=37.6
Q ss_pred cchhHHHHHHHhhcCCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhh
Q psy782 17 SVYSVWVEFIQLSLDHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSS 88 (100)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~ 88 (100)
+..-.|.++.+++.+...++++-|...+ .++..+...+.+....- ....|....-..++-+.+|+++.+
T Consensus 62 IH~~LFqDvY~WAG~~Rtv~iskg~~~f-~~~~~I~~~~~~l~~~L--~~~~~l~~l~~~~f~~~~a~~~~e 130 (200)
T PRK10347 62 IHRQLYQDIFDWAGQLREVDIYQGDTPF-CHFAYIEKEGNALMQDL--EEEGYLVGLEKAKFVERLAHYYCE 130 (200)
T ss_pred HHHHHHcchHHhcCcceeccccCCCCcc-CCHHHHHHHHHHHHHHH--HhhhHhhcCCHHHHHHHHHHHHHH
Confidence 3344455555677766778999998878 66666655433332211 011232222235566666666654
No 139
>KOG1411|consensus
Probab=59.05 E-value=29 Score=25.44 Aligned_cols=67 Identities=21% Similarity=0.107 Sum_probs=44.2
Q ss_pred hhHHHHHHHhhc---CCCceecCCCCCCCC--Cc--hHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHh
Q psy782 19 YSVWVEFIQLSL---DHKPLNLGQGFPDYE--SA--PSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYS 87 (100)
Q Consensus 19 ~~~~~~~~~~~~---~~~~i~l~~G~P~~~--~p--p~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~ 87 (100)
++++--+.+.-. .+.-|+||+|.=..+ -| -+.+++|-++.+... ..-.|.|..|++++.+..++...
T Consensus 36 pDpILGVTeAfk~D~n~~KiNLgvGaYRdd~gKp~vL~~VrkAE~ql~~~~--ldKEYlpI~Gl~eF~k~sakLa~ 109 (427)
T KOG1411|consen 36 PDPILGVTEAFKKDPNPKKINLGVGAYRDDNGKPYVLPSVRKAEQQLASLS--LDKEYLPITGLAEFNKLSAKLAL 109 (427)
T ss_pred CCCcccHHHHHhcCCCcceeeecccceecCCCCeeeeHHHHHHHHHHhhhc--ccchhccccchHHHHHHHHHHhh
Confidence 455555555322 234699999943221 22 277888777766533 34579999999999999998873
No 140
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=58.62 E-value=19 Score=25.37 Aligned_cols=42 Identities=14% Similarity=0.094 Sum_probs=28.5
Q ss_pred CceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHH
Q psy782 33 KPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLY 86 (100)
Q Consensus 33 ~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~ 86 (100)
+.|+|+.++..+ .|+..+ ... ..+.|+... ..+||++||+++
T Consensus 29 ~~~~l~~Nenp~-~~~~~~--------~~~--~~~~Yp~~~-~~~l~~~~a~~~ 70 (351)
T PRK01688 29 GDVWLNANEYPT-AVEFQL--------TQQ--TLNRYPECQ-PKAVIENYAAYA 70 (351)
T ss_pred CceEecCCCCCC-CCChhh--------ccc--ccccCCCCC-hHHHHHHHHHHh
Confidence 469999999888 666543 111 256796654 478888888775
No 141
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=57.23 E-value=7.2 Score=27.62 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=16.3
Q ss_pred cCCCCCCCCCHHHHHHHHHHH
Q psy782 66 LNQYTRGFGHPRIVQAIAKLY 86 (100)
Q Consensus 66 ~~~Y~~~~G~~~LR~aia~~~ 86 (100)
...|+.+ +.++||++||+++
T Consensus 53 ~~~Y~~~-~~~~lr~~ia~~~ 72 (364)
T PRK04781 53 TRRYPDP-QPPGLRSALAALY 72 (364)
T ss_pred hccCCCC-CHHHHHHHHHHHh
Confidence 5678766 4799999999987
No 142
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []. FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body
Probab=56.70 E-value=15 Score=20.86 Aligned_cols=40 Identities=5% Similarity=0.195 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhh
Q psy782 49 SHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLI 90 (100)
Q Consensus 49 ~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~ 90 (100)
+.+++++...++... ...-....|...||++|.+.+++..
T Consensus 44 ~~ird~ii~~l~~~~--~~~l~~~~g~~~Lk~~l~~~in~~l 83 (99)
T PF03748_consen 44 PRIRDAIISYLSSKT--AEDLSGPEGKERLKDELKDRINKIL 83 (99)
T ss_pred HHHHHHHHHHHHcCC--HHHhcChhhHHHHHHHHHHHHHHhh
Confidence 467778888777652 2233456899999999999998654
No 143
>PRK06234 methionine gamma-lyase; Provisional
Probab=55.87 E-value=6.9 Score=28.29 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=26.6
Q ss_pred CCCCCCchHHHHHHHHHH-----HhcCCcccCCCC--CCCCCHHHHHHHHHHHh
Q psy782 41 FPDYESAPSHVSKGLADA-----ATGENKLLNQYT--RGFGHPRIVQAIAKLYS 87 (100)
Q Consensus 41 ~P~~~~pp~~l~~a~~~~-----~~~~~~~~~~Y~--~~~G~~~LR~aia~~~~ 87 (100)
.|++ .++..+.++..+. .+.. -..|+ +..+..+|+++||+++.
T Consensus 29 ~P~~-~~~~~~~~~~~~~~~~~~~~~~---~~~Y~r~~~p~~~~Le~~iA~~~g 78 (400)
T PRK06234 29 TPIY-QTSTFIFDSAEQGGRRFAGEES---GYIYSRLGNPTSTEVENKLALLEG 78 (400)
T ss_pred CCcc-cccceecCChHHHHHhhccCcC---CCcccCCCCccHHHHHHHHHHHhC
Confidence 5666 5555555554431 1122 12366 67789999999999975
No 144
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=54.96 E-value=31 Score=24.57 Aligned_cols=38 Identities=13% Similarity=0.214 Sum_probs=29.1
Q ss_pred CchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCCC
Q psy782 46 SAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIERP 93 (100)
Q Consensus 46 ~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~ 93 (100)
.+|+++.+++.+.+.+ |. +.+++++++.+++++.+|.+
T Consensus 24 ~~~~~v~~a~~~~~~~-------~~---~~~~~~~~~~~~~a~~~g~~ 61 (363)
T TIGR01437 24 TVSDEVADAQKRGAQN-------YF---EIKELVNKTGEYIANLLGVE 61 (363)
T ss_pred CCCHHHHHHHHHHHhc-------CC---CHHHHHHHHHHHHHHhhCCC
Confidence 5678999998887532 32 56789999999998887753
No 145
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=54.65 E-value=43 Score=23.61 Aligned_cols=55 Identities=11% Similarity=0.163 Sum_probs=35.4
Q ss_pred CCceecCCCCC--CCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhC
Q psy782 32 HKPLNLGQGFP--DYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIE 91 (100)
Q Consensus 32 ~~~i~l~~G~P--~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g 91 (100)
...++|..|.- .+...++.+.+++.+.+++. .+ + ...+..+++.++++++.+..+
T Consensus 29 ~~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~~~---~~-~-~~~~~~~~~~~la~~l~~~~~ 85 (377)
T PRK02936 29 KTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDI---WH-V-SNLFTNSLQEEVASLLAENSA 85 (377)
T ss_pred CEEEECCcchhhccCCCCCHHHHHHHHHHHHhc---cc-c-ccccCCHHHHHHHHHHHhcCC
Confidence 34788877752 12134567788888887653 11 2 234567899999999977544
No 146
>PF13092 CENP-L: Kinetochore complex Sim4 subunit Fta1
Probab=54.62 E-value=11 Score=23.98 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHHhhhhCCCCCC
Q psy782 72 GFGHPRIVQAIAKLYSSLIERPLLP 96 (100)
Q Consensus 72 ~~G~~~LR~aia~~~~~~~g~~~~~ 96 (100)
..|-..||+++..|+++.|++.+++
T Consensus 11 ~R~p~~l~~~v~~~L~~~FDc~is~ 35 (162)
T PF13092_consen 11 TRGPNSLRQAVISWLSTTFDCRISP 35 (162)
T ss_pred ccCCHHHHHHHHHHHHHhcCceEEe
Confidence 5688899999999999999887654
No 147
>KOG4465|consensus
Probab=54.30 E-value=23 Score=26.09 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=15.5
Q ss_pred CCCCCHHHHHHHHHHHhhhhC
Q psy782 71 RGFGHPRIVQAIAKLYSSLIE 91 (100)
Q Consensus 71 ~~~G~~~LR~aia~~~~~~~g 91 (100)
..+| ..||++|++||.+..|
T Consensus 167 t~wg-ralr~aia~wy~~k~~ 186 (598)
T KOG4465|consen 167 TGWG-RALRKAIADWYNEKGG 186 (598)
T ss_pred chhH-HHHHHHHHHHHhccch
Confidence 3455 6799999999988644
No 148
>KOG3074|consensus
Probab=54.10 E-value=11 Score=25.84 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=20.0
Q ss_pred CCCCCCCHHHHHHHHHHHhhhhCCC
Q psy782 69 YTRGFGHPRIVQAIAKLYSSLIERP 93 (100)
Q Consensus 69 Y~~~~G~~~LR~aia~~~~~~~g~~ 93 (100)
-.|.+|..++|++|++++.+ ||..
T Consensus 148 alPaqG~aEfrdaLaelle~-~G~~ 171 (263)
T KOG3074|consen 148 ALPAQGIAEFRDALAELLED-FGEG 171 (263)
T ss_pred eccchhHHHHHHHHHHHHHH-hCCc
Confidence 45788999999999999977 5764
No 149
>KOG0571|consensus
Probab=51.19 E-value=14 Score=27.80 Aligned_cols=48 Identities=19% Similarity=0.084 Sum_probs=30.8
Q ss_pred CCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHH
Q psy782 32 HKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAI 82 (100)
Q Consensus 32 ~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~ai 82 (100)
..+.+|++|.++- +-..+.++. ...+.... ..+..+...|+..|++-|
T Consensus 258 ~~lhsFaIGle~S-PDL~aarkV-Ad~igt~H-he~~ft~qegidal~eVI 305 (543)
T KOG0571|consen 258 SKLHSFAIGLEDS-PDLLAARKV-ADFIGTIH-HEHTFTIQEGIDALDEVI 305 (543)
T ss_pred CCceEEEecCCCC-hhHHHHHHH-HHHhCCcc-eEEEEcHHHHHHHHHHHh
Confidence 4789999999976 333443333 33343321 235678889999998876
No 150
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=49.58 E-value=33 Score=21.08 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=29.7
Q ss_pred ccchhHHHHHHHhhcCCCceecCCCCCCCCCchHHHHHHHHHH
Q psy782 16 ASVYSVWVEFIQLSLDHKPLNLGQGFPDYESAPSHVSKGLADA 58 (100)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~i~l~~G~P~~~~pp~~l~~a~~~~ 58 (100)
.+.+.-+..+.+.+....++=+|.|.-.. +||..+..++.++
T Consensus 54 ~Lt~e~f~~vl~~a~~~EilliGTG~~~r-f~p~~l~aal~~~ 95 (127)
T COG3737 54 DLTPEDFERVLAEAPDVEILLIGTGARLR-FPPPKLRAALKAA 95 (127)
T ss_pred hCCHHHHHHHHhcCCCceEEEEecCcccc-CCCHHHHHHHHHc
Confidence 34455555666666666788899998877 8888888877653
No 151
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=48.88 E-value=37 Score=24.09 Aligned_cols=59 Identities=12% Similarity=0.010 Sum_probs=37.9
Q ss_pred CCceecCCCCCCCCCchHHHHHHHHHHHhcC----CcccCCCCCCCCCHHHHHHHHHHHhhhhCCC
Q psy782 32 HKPLNLGQGFPDYESAPSHVSKGLADAATGE----NKLLNQYTRGFGHPRIVQAIAKLYSSLIERP 93 (100)
Q Consensus 32 ~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~----~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~ 93 (100)
.+.++|..|.- + .++.+.+++.+.+... ......|+...+.+.|++.+++++++.+|.+
T Consensus 19 ~~~~~~~~~~~-~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~ 81 (402)
T cd00378 19 RETLELIASEN-F--TSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAE 81 (402)
T ss_pred HhCeeeeccCC-c--CCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCC
Confidence 45788866544 2 3556777776554211 1123457777788889988888887777764
No 152
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=46.17 E-value=7.9 Score=27.21 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=26.2
Q ss_pred CceecCCCCCCCCCch-HHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHH
Q psy782 33 KPLNLGQGFPDYESAP-SHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLY 86 (100)
Q Consensus 33 ~~i~l~~G~P~~~~pp-~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~ 86 (100)
++|+|+..+..+ .|| ..+.. . ....|+... .+||++||+++
T Consensus 25 ~~i~ls~Nenp~-~~~~~~~~~---~-------~~~~Yp~~~--~~L~~~ia~~~ 66 (339)
T PRK06959 25 AWLDLSTGINPH-GYPVPPVPA---D-------AWRRLPEDD--DGLAACAARYY 66 (339)
T ss_pred hhceeccCCCCC-CCCCCCCCH---H-------HHHhCCCch--HHHHHHHHHHh
Confidence 479999998555 333 22211 1 134587543 89999999886
No 153
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=44.60 E-value=42 Score=24.18 Aligned_cols=53 Identities=15% Similarity=0.043 Sum_probs=32.4
Q ss_pred CceecCCCCCCCCCchHHHHHHHHHHHhcCCccc---CCCCC---CCCCHHHHHHHHHHHh
Q psy782 33 KPLNLGQGFPDYESAPSHVSKGLADAATGENKLL---NQYTR---GFGHPRIVQAIAKLYS 87 (100)
Q Consensus 33 ~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~---~~Y~~---~~G~~~LR~aia~~~~ 87 (100)
+.+-|..|.+.+ +|+.+.+++.+.+.+..... ..|.. .....++|++||+++.
T Consensus 32 ~~iyLd~a~~~~--~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~ 90 (424)
T PLN02855 32 KLVYLDNAATSQ--KPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFIN 90 (424)
T ss_pred CeEEeeCccccC--CCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcC
Confidence 478899888866 56777888877765431111 11111 1224688888888774
No 154
>PF05953 Allatostatin: Allatostatin; InterPro: IPR010276 This family consists of allatostatins, bombystatins, helicostatins, cydiastatins and schistostatin from several insect species. Allatostatins (ASTs) of the Tyr/Phe-Xaa-Phe-Gly Leu/Ile-NH2 family are a group of insect neuropeptides that inhibit juvenile hormone biosynthesis by the corpora allata [].; GO: 0005184 neuropeptide hormone activity
Probab=44.24 E-value=15 Score=12.87 Aligned_cols=7 Identities=29% Similarity=0.577 Sum_probs=3.7
Q ss_pred ceecCCC
Q psy782 34 PLNLGQG 40 (100)
Q Consensus 34 ~i~l~~G 40 (100)
.++||+|
T Consensus 5 ~Y~FGLG 11 (11)
T PF05953_consen 5 MYSFGLG 11 (11)
T ss_pred ccccCcC
Confidence 3555554
No 155
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=44.10 E-value=20 Score=20.17 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=16.6
Q ss_pred CCCCCCCHHHHHHHHHHHhh
Q psy782 69 YTRGFGHPRIVQAIAKLYSS 88 (100)
Q Consensus 69 Y~~~~G~~~LR~aia~~~~~ 88 (100)
=.+..|+.+|++.|+++++-
T Consensus 16 l~~~~~~~~L~~~i~~r~~~ 35 (82)
T cd06407 16 LPPSWGFTELKQEIAKRFKL 35 (82)
T ss_pred cCCCCCHHHHHHHHHHHhCC
Confidence 35677999999999998863
No 156
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=41.99 E-value=81 Score=21.27 Aligned_cols=30 Identities=3% Similarity=0.052 Sum_probs=20.1
Q ss_pred CCCceecCCCCCCCCCc----hHHHHHHHHHHHhc
Q psy782 31 DHKPLNLGQGFPDYESA----PSHVSKGLADAATG 61 (100)
Q Consensus 31 ~~~~i~l~~G~P~~~~p----p~~l~~a~~~~~~~ 61 (100)
+.+||++++|.+.. .. .+.+.+++.++.+.
T Consensus 102 gadIIn~S~g~~~~-~~~~~~~~~l~~ai~~A~~~ 135 (247)
T cd07491 102 KVDIISMSWTIKKP-EDNDNDINELENAIKEALDR 135 (247)
T ss_pred CCcEEEeeeecccc-cccccchHHHHHHHHHHHhC
Confidence 45788888887654 22 46777777776654
No 157
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=41.69 E-value=29 Score=24.66 Aligned_cols=38 Identities=13% Similarity=0.208 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhC
Q psy782 49 SHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIE 91 (100)
Q Consensus 49 ~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g 91 (100)
++-.+++.++++.+ . |....+..+||+++|+++...+.
T Consensus 10 ~~~~~~v~~~~~~~---~--~~~g~~~~~le~~la~~~g~~~~ 47 (380)
T TIGR03588 10 QDDIDAVVEVLKSD---F--LTQGPTVPAFEEALAEYVGAKYA 47 (380)
T ss_pred HHHHHHHHHHHhcC---C--ccCChhHHHHHHHHHHHHCCCeE
Confidence 33466777777665 3 33345678999999998865433
No 158
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=41.60 E-value=47 Score=21.61 Aligned_cols=31 Identities=23% Similarity=0.101 Sum_probs=22.4
Q ss_pred cCCCceecCCCCCCCCCchHHHHHHHHHHHhc
Q psy782 30 LDHKPLNLGQGFPDYESAPSHVSKGLADAATG 61 (100)
Q Consensus 30 ~~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~ 61 (100)
.+.++|++++|.+.. ...+.+.+++.++.++
T Consensus 90 ~~v~Vin~S~G~~~~-~~~~~~~~~~~~a~~~ 120 (222)
T cd07492 90 NDIRIVNLSLGGPGD-RDFPLLKELLEYAYKA 120 (222)
T ss_pred CCCCEEEeCCCCCCC-CcCHHHHHHHHHHHHC
Confidence 345799999998876 5556777777776653
No 159
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=40.40 E-value=82 Score=18.87 Aligned_cols=40 Identities=15% Similarity=0.069 Sum_probs=25.7
Q ss_pred cchhHHHHHHHhhcCCCceecCCCCCCCCCchHHHHHHHHH
Q psy782 17 SVYSVWVEFIQLSLDHKPLNLGQGFPDYESAPSHVSKGLAD 57 (100)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~i~l~~G~P~~~~pp~~l~~a~~~ 57 (100)
+....+..+..+..+++++=+|.|.-.. ++++++.+.+.+
T Consensus 40 l~~~~l~~l~~~~~~peiliiGtG~~~~-~~~~~~~~~l~~ 79 (114)
T cd05125 40 ITEESLSLFELLEPRPEILVIGTGRKSR-PLSPELRKYFKK 79 (114)
T ss_pred CCHHHHHHHHhccCCCCEEEEccCCCCC-cCCHHHHHHHHH
Confidence 3444444444444456799999998855 677777766653
No 160
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=40.23 E-value=49 Score=22.56 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=21.4
Q ss_pred CCCceecCCCCCCCC-CchHHHHHHHHHHHhc
Q psy782 31 DHKPLNLGQGFPDYE-SAPSHVSKGLADAATG 61 (100)
Q Consensus 31 ~~~~i~l~~G~P~~~-~pp~~l~~a~~~~~~~ 61 (100)
+.++|++++|.+... ...+.+.+++..+.+.
T Consensus 106 g~~VIN~S~G~~~~~~~~~~~l~~a~~~a~~~ 137 (267)
T cd07476 106 GAHIINISGGRLTQTGEADPILANAVAMCQQN 137 (267)
T ss_pred CCCEEEecCCcCCCCCCCCHHHHHHHHHHHHC
Confidence 457899999987653 3446777777766543
No 161
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=40.20 E-value=80 Score=18.72 Aligned_cols=44 Identities=11% Similarity=-0.024 Sum_probs=21.7
Q ss_pred CchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhh
Q psy782 46 SAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSL 89 (100)
Q Consensus 46 ~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~ 89 (100)
.|.+.|++.+.++.+.+....++=-+..+..+..+++.+...+.
T Consensus 8 MP~~~L~~l~~~a~~~~~~~V~RG~~~g~~~~t~~~~~~l~~~~ 51 (113)
T PF09673_consen 8 MPDASLRNLLKQAERAGVVVVFRGFPDGSFKPTAKAIQELLRKD 51 (113)
T ss_pred CCHHHHHHHHHHHHhCCcEEEEECCCCCCHHHHHHHHHHHhhcc
Confidence 45566666666665554222222112225555666665555443
No 162
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=39.85 E-value=79 Score=22.44 Aligned_cols=54 Identities=15% Similarity=0.148 Sum_probs=32.3
Q ss_pred CCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCC--CC----CCCCCHHHHHHHHHHHh
Q psy782 32 HKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQ--YT----RGFGHPRIVQAIAKLYS 87 (100)
Q Consensus 32 ~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~--Y~----~~~G~~~LR~aia~~~~ 87 (100)
.+++-|..|...+ +|+.+.+++.+.+.+....... |. ...++.++|++||+++.
T Consensus 17 ~~~~yld~~~~~~--~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~ 76 (403)
T TIGR01979 17 KPLVYLDSAATSQ--KPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFIN 76 (403)
T ss_pred CceEEEeCccccC--CCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhC
Confidence 3578888888876 4566778877766542100010 10 11246688888888774
No 163
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=39.83 E-value=28 Score=24.63 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=25.5
Q ss_pred chHHHHHHHHHHHhcC---CcccCCCCCCCCCHHHHHHHHHHHhh
Q psy782 47 APSHVSKGLADAATGE---NKLLNQYTRGFGHPRIVQAIAKLYSS 88 (100)
Q Consensus 47 pp~~l~~a~~~~~~~~---~~~~~~Y~~~~G~~~LR~aia~~~~~ 88 (100)
+++.+.+++.+.+... +...+.|+ ..+.+.|++++++++..
T Consensus 11 ~~~~v~~~~~~~~~~~~~n~~~~~~~~-~~~~~~l~~a~~~~~~~ 54 (382)
T TIGR03403 11 LDPKVKELMDPFFCDIYGNPNSLHQFG-TATHPAIAEALDKLYKG 54 (382)
T ss_pred CCHHHHHHHHHHHHhcCcCCccccHHH-HHHHHHHHHHHHHHHHH
Confidence 4456777777766542 11233454 35678888888888753
No 164
>KOG0257|consensus
Probab=38.93 E-value=23 Score=26.25 Aligned_cols=41 Identities=10% Similarity=0.111 Sum_probs=29.2
Q ss_pred CchHHHHHHHHHH-HhcCCcccCCCCCCCCCHHHHHHHHHHHhhh
Q psy782 46 SAPSHVSKGLADA-ATGENKLLNQYTRGFGHPRIVQAIAKLYSSL 89 (100)
Q Consensus 46 ~pp~~l~~a~~~~-~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~ 89 (100)
+..+++++++.+- ..+. ..+|+-+++...|+++++.++...
T Consensus 48 fv~ea~~~~~~~~~~~qY---t~~~G~p~L~~aL~k~~se~~~~~ 89 (420)
T KOG0257|consen 48 FVTEAAKNAAKEPSTNQY---TRGYGLPQLRKALAKAYSEFYGGL 89 (420)
T ss_pred HHHHHHHHHhccchhccc---cccCCchHHHHHHHHHHHHHhccc
Confidence 4567777777774 4444 667888888888888888876553
No 165
>COG2184 Fic Protein involved in cell division [Cell division and chromosome partitioning]
Probab=38.12 E-value=1e+02 Score=20.61 Aligned_cols=62 Identities=15% Similarity=0.256 Sum_probs=38.2
Q ss_pred cchhHHHHHHHhhcCCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhh
Q psy782 17 SVYSVWVEFIQLSLDHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSS 88 (100)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~ 88 (100)
+....|.++.+++.+....+...|.-.| ..+-.|..++..+...-+ .-+| .+.+.+++++.+
T Consensus 64 IHR~LFqdiy~wAG~~R~~~i~kG~~~f-~~~~~I~~~ld~~~~~~~--~~~~-------~~~e~~~~~~~e 125 (201)
T COG2184 64 IHRQLFQDIYEWAGQFRTVGISKGDTRF-ANPSYIERALDYAEQWMP--QETY-------DFVERAAHKYVE 125 (201)
T ss_pred HHHHHHHHHHHhhccccccchhcCCccc-cCHHHHHHHHHHHHHHhh--hhhh-------hHHHHHHHHHhh
Confidence 3444556666677665556888887777 777777777776665321 2234 466666666644
No 166
>PF09183 DUF1947: Domain of unknown function (DUF1947); InterPro: IPR015266 Members of this entry are a set of hypothetical archaeal proteins. Their exact function has not, as yet, been defined. ; PDB: 1Q7H_A.
Probab=35.62 E-value=40 Score=18.33 Aligned_cols=18 Identities=6% Similarity=-0.060 Sum_probs=8.8
Q ss_pred HHHHHHHhhhhCCCCCCC
Q psy782 80 QAIAKLYSSLIERPLLPH 97 (100)
Q Consensus 80 ~aia~~~~~~~g~~~~~~ 97 (100)
+.|-+.+...||++++++
T Consensus 11 k~~~~k~~~~ygIdi~~~ 28 (65)
T PF09183_consen 11 KEIKEKIKEKYGIDISGE 28 (65)
T ss_dssp HHHHHHHHT-TT---TT-
T ss_pred HHHHHHHHHHhCcCCCcc
Confidence 455566667789988875
No 167
>PRK09064 5-aminolevulinate synthase; Validated
Probab=34.45 E-value=1.7e+02 Score=20.86 Aligned_cols=54 Identities=11% Similarity=0.041 Sum_probs=28.4
Q ss_pred CCceecCCC-CCCCCCchHHHHHHHHHHHhcCCccc----CCCCCCCCCHHHHHHHHHHH
Q psy782 32 HKPLNLGQG-FPDYESAPSHVSKGLADAATGENKLL----NQYTRGFGHPRIVQAIAKLY 86 (100)
Q Consensus 32 ~~~i~l~~G-~P~~~~pp~~l~~a~~~~~~~~~~~~----~~Y~~~~G~~~LR~aia~~~ 86 (100)
..+++|+.= .-.+ .+++.+.+++.+.++..+... ..|++..-..+|+++||+++
T Consensus 46 ~~~~~~~s~dylgl-~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~ 104 (407)
T PRK09064 46 REVTVWCSNDYLGM-GQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLH 104 (407)
T ss_pred ceEEEEECCCCcCC-CCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHh
Confidence 346777543 2344 455678888888876542111 11222333455666666554
No 168
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=34.08 E-value=68 Score=20.52 Aligned_cols=39 Identities=10% Similarity=0.152 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhh
Q psy782 49 SHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSL 89 (100)
Q Consensus 49 ~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~ 89 (100)
+.+++++...+.... ...=.+..|...||++|-+.++..
T Consensus 103 p~vrd~li~lfsskt--~~eL~t~~Gke~Lk~ei~~~in~~ 141 (159)
T COG1580 103 PEVRDALLMLFSSKT--AAELSTPEGKEKLKAEIKDRINTI 141 (159)
T ss_pred HHHHHHHHHHHHhCC--HHHhcCchhHHHHHHHHHHHHHHH
Confidence 466777777776652 333456789999999999998764
No 169
>KOG2178|consensus
Probab=32.71 E-value=57 Score=24.14 Aligned_cols=30 Identities=20% Similarity=0.338 Sum_probs=24.7
Q ss_pred CCceecCCCCCCCCCch---HHHHHHHHHHHhcC
Q psy782 32 HKPLNLGQGFPDYESAP---SHVSKGLADAATGE 62 (100)
Q Consensus 32 ~~~i~l~~G~P~~~~pp---~~l~~a~~~~~~~~ 62 (100)
++|.+|+.|.+.| ++| +..++.+.+++...
T Consensus 193 PPV~sFslGslGF-Ltpf~f~~f~~~l~~v~~~~ 225 (409)
T KOG2178|consen 193 PPVLSFSLGSLGF-LTPFPFANFQEQLARVLNGR 225 (409)
T ss_pred CCeEEeecCCccc-cccccHHHHHHHHHHHhcCc
Confidence 5799999998888 665 88999999887654
No 170
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=32.66 E-value=94 Score=18.53 Aligned_cols=63 Identities=11% Similarity=0.120 Sum_probs=38.9
Q ss_pred HHHHHHhhcCCCceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHH
Q psy782 22 WVEFIQLSLDHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLY 86 (100)
Q Consensus 22 ~~~~~~~~~~~~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~ 86 (100)
...+.+.....+++=|==|.|.+ |-=.+...+.++|...+...+.|-..--.+++|+.|-++-
T Consensus 5 ~~~I~~~i~~n~VvLFMKGtp~~--P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s 67 (105)
T COG0278 5 LDRIQKQIKENPVVLFMKGTPEF--PQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYS 67 (105)
T ss_pred HHHHHHHhhcCceEEEecCCCCC--CCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhc
Confidence 34455556667888899999987 2223333334445443322355667777899999986653
No 171
>PF13592 HTH_33: Winged helix-turn helix
Probab=30.47 E-value=32 Score=17.87 Aligned_cols=16 Identities=13% Similarity=0.000 Sum_probs=8.6
Q ss_pred HHHHHHHhhhhCCCCC
Q psy782 80 QAIAKLYSSLIERPLL 95 (100)
Q Consensus 80 ~aia~~~~~~~g~~~~ 95 (100)
..|+.++.+.||+.++
T Consensus 8 ~~i~~~I~~~fgv~ys 23 (60)
T PF13592_consen 8 KEIAAYIEEEFGVKYS 23 (60)
T ss_pred HHHHHHHHHHHCCEEc
Confidence 3455555555566554
No 172
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=30.23 E-value=53 Score=23.46 Aligned_cols=35 Identities=9% Similarity=-0.010 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhh
Q psy782 50 HVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSL 89 (100)
Q Consensus 50 ~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~ 89 (100)
.-.+++.+++..+ ...|+ ....+|+++||+++...
T Consensus 15 ~e~~~~~~~l~~~---~~~~g--~~~~~le~~la~~~g~~ 49 (379)
T PRK11658 15 EELAAVKEVLRSG---WITTG--PKNQALEQAFCQLTGNQ 49 (379)
T ss_pred HHHHHHHHHHHcC---CccCC--HhHHHHHHHHHHHhCCC
Confidence 3356677777665 33333 34688999999888544
No 173
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=30.00 E-value=72 Score=24.18 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=21.3
Q ss_pred CCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCC
Q psy782 39 QGFPDYESAPSHVSKGLADAATGENKLLNQYTRG 72 (100)
Q Consensus 39 ~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~ 72 (100)
.|-||+=.||-.+.+++..+..+- ..+|+|-
T Consensus 17 tggpdplappvdl~dal~~i~~dv---mag~sp~ 47 (652)
T COG4867 17 TGGPDPLAPPVDLRDALEQIGQDV---MAGASPR 47 (652)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHH---hccCCHH
Confidence 466776245568888888877665 6778753
No 174
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=29.98 E-value=86 Score=22.37 Aligned_cols=42 Identities=10% Similarity=0.045 Sum_probs=22.9
Q ss_pred CchHHHHHHHHHHHhcCCc--c---cCCCCCCCCCHHHHHHHHHHHh
Q psy782 46 SAPSHVSKGLADAATGENK--L---LNQYTRGFGHPRIVQAIAKLYS 87 (100)
Q Consensus 46 ~pp~~l~~a~~~~~~~~~~--~---~~~Y~~~~G~~~LR~aia~~~~ 87 (100)
++++.+.+++.+....... . ...+.....+.+||+.+|+++.
T Consensus 31 p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g 77 (387)
T PRK09331 31 ILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLG 77 (387)
T ss_pred CCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhC
Confidence 4556777777776633110 0 1122223346778888887764
No 175
>KOG1412|consensus
Probab=29.69 E-value=1.2e+02 Score=22.17 Aligned_cols=53 Identities=23% Similarity=0.298 Sum_probs=33.5
Q ss_pred CceecCCCCCCCC---Cch-HHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHH
Q psy782 33 KPLNLGQGFPDYE---SAP-SHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLY 86 (100)
Q Consensus 33 ~~i~l~~G~P~~~---~pp-~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~ 86 (100)
.-++|++|.=..+ +.. +.++++ ...+.++....+.|-|..|++.++++.++.+
T Consensus 31 ~KvnL~igAYRtd~g~PWvLPvVk~~-e~~i~~d~s~NHEYLpi~Gl~~F~~~A~el~ 87 (410)
T KOG1412|consen 31 VKVNLGIGAYRTDDGKPWVLPVVKKA-EKKIANDQSLNHEYLPILGLPTFTKAATELL 87 (410)
T ss_pred ceeecccceEEcCCCCeeEehhhhhh-hhhccCchhccchhccccCchhhhhhhHHHh
Confidence 3488888843221 112 334333 3334444445678999999999999988766
No 176
>KOG4266|consensus
Probab=29.46 E-value=80 Score=25.20 Aligned_cols=35 Identities=23% Similarity=0.238 Sum_probs=23.1
Q ss_pred hhHHHHHHHh--hcCCCceecCCCCCCCCCch---HHHHHH
Q psy782 19 YSVWVEFIQL--SLDHKPLNLGQGFPDYESAP---SHVSKG 54 (100)
Q Consensus 19 ~~~~~~~~~~--~~~~~~i~l~~G~P~~~~pp---~~l~~a 54 (100)
.+.|.+.+.+ +.+.++++|++|-||| ... +.+.|.
T Consensus 277 TSWFLDAFNYAI~~kidvLNLSIGGPDf-mD~PFVeKVwEl 316 (1033)
T KOG4266|consen 277 TSWFLDAFNYAIATKIDVLNLSIGGPDF-MDLPFVEKVWEL 316 (1033)
T ss_pred hhHHHHHHHHHHhhhcceEeeccCCccc-ccchHHHHHHhh
Confidence 3445555554 3567999999999999 433 555554
No 177
>PRK10628 LigB family dioxygenase; Provisional
Probab=29.19 E-value=92 Score=21.40 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=21.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhhCCCCC
Q psy782 67 NQYTRGFGHPRIVQAIAKLYSSLIERPLL 95 (100)
Q Consensus 67 ~~Y~~~~G~~~LR~aia~~~~~~~g~~~~ 95 (100)
.+| +..|.++|-+.|++.+.+. |+..+
T Consensus 62 ~~Y-pa~G~p~LA~~i~~ll~~~-~~~~~ 88 (246)
T PRK10628 62 THY-PAPGSPALAQRLVELLAPV-PVTLD 88 (246)
T ss_pred ecC-CCCCCHHHHHHHHHHhhhc-CcccC
Confidence 568 5779999999999999763 66433
No 178
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=28.40 E-value=68 Score=19.85 Aligned_cols=39 Identities=10% Similarity=0.196 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhh
Q psy782 50 HVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLI 90 (100)
Q Consensus 50 ~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~ 90 (100)
.+++.+...++... ...=....|...||++|.+++++..
T Consensus 88 ~Ird~ii~~L~~~~--~~~l~~~~G~~~Lr~el~~~in~~l 126 (142)
T PRK07718 88 QVKNIIIEELADMN--AEDFKGKKGLEALKEQLKEKINNLM 126 (142)
T ss_pred hhHHHHHHHHHcCC--HHHhcChhHHHHHHHHHHHHHHHhh
Confidence 56677777777652 2233457899999999999997653
No 179
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=27.85 E-value=1.4e+02 Score=17.62 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=20.6
Q ss_pred CCCceecCCCCCCCCCchHHHHHHHHH
Q psy782 31 DHKPLNLGQGFPDYESAPSHVSKGLAD 57 (100)
Q Consensus 31 ~~~~i~l~~G~P~~~~pp~~l~~a~~~ 57 (100)
.++++=+|.|.-.. ++++.+.+.+.+
T Consensus 52 ~peiliiGTG~~~~-~~~~~~~~~l~~ 77 (109)
T cd05560 52 QPEVILLGTGERQR-FPPPALLAPLLA 77 (109)
T ss_pred CCCEEEEecCCCCC-cCCHHHHHHHHH
Confidence 47899999999877 778888776654
No 180
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=27.18 E-value=1.2e+02 Score=20.16 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=16.1
Q ss_pred CCceecCCCCCCCCCc-hHHHHHHHHH
Q psy782 32 HKPLNLGQGFPDYESA-PSHVSKGLAD 57 (100)
Q Consensus 32 ~~~i~l~~G~P~~~~p-p~~l~~a~~~ 57 (100)
...|.|+.|+|-. .+ ..++.+.+.+
T Consensus 72 ~~~V~lTGGEP~~-~~~l~~Ll~~l~~ 97 (212)
T COG0602 72 ARGVSLTGGEPLL-QPNLLELLELLKR 97 (212)
T ss_pred cceEEEeCCcCCC-cccHHHHHHHHHh
Confidence 3479999999933 22 3566666553
No 181
>PF07455 Psu: Phage polarity suppression protein (Psu); InterPro: IPR010006 This entry is represented by Bacteriophage P4, Psu, the polarity suppression protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of phage polarity suppression proteins (Psu) (approximately 190 residues long). The Psu protein of Bacteriophage P4 causes suppression of transcriptional polarity in Escherichia coli by overcoming Rho termination factor activity [].
Probab=27.08 E-value=46 Score=21.95 Aligned_cols=15 Identities=7% Similarity=0.173 Sum_probs=10.5
Q ss_pred CHHHHHHHHHHHhhh
Q psy782 75 HPRIVQAIAKLYSSL 89 (100)
Q Consensus 75 ~~~LR~aia~~~~~~ 89 (100)
...||++|++++...
T Consensus 124 ~~~LReaL~~~lt~~ 138 (188)
T PF07455_consen 124 DTYLREALSRWLTAG 138 (188)
T ss_pred HHHHHHHHHHHHccC
Confidence 355888888887654
No 182
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=26.98 E-value=1.4e+02 Score=17.51 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=20.0
Q ss_pred CCCceecCCCCCCCCCchHHHHHHHHH
Q psy782 31 DHKPLNLGQGFPDYESAPSHVSKGLAD 57 (100)
Q Consensus 31 ~~~~i~l~~G~P~~~~pp~~l~~a~~~ 57 (100)
.++++=+|.|.-.. ++++++.+.+.+
T Consensus 52 ~peiliiGTG~~~~-~~~~~~~~~l~~ 77 (109)
T cd00248 52 RPDILLIGTGAEIA-FLPRALRAALRA 77 (109)
T ss_pred CCCEEEEcCCCCCC-cCCHHHHHHHHH
Confidence 37899999998876 777777776654
No 183
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=26.75 E-value=62 Score=15.90 Aligned_cols=9 Identities=0% Similarity=-0.230 Sum_probs=5.9
Q ss_pred hhCCCCCCC
Q psy782 89 LIERPLLPH 97 (100)
Q Consensus 89 ~~g~~~~~~ 97 (100)
..|..++.+
T Consensus 38 ~~Gy~ft~~ 46 (49)
T PF07862_consen 38 EAGYDFTEE 46 (49)
T ss_pred HcCCCCCHH
Confidence 358777765
No 184
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=26.46 E-value=84 Score=23.27 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=20.8
Q ss_pred CceecCCCCCCCCCchHHHHHHHHHHHh
Q psy782 33 KPLNLGQGFPDYESAPSHVSKGLADAAT 60 (100)
Q Consensus 33 ~~i~l~~G~P~~~~pp~~l~~a~~~~~~ 60 (100)
..|.||.|.|.. .+++.+.+.+..+.+
T Consensus 105 ~~i~fgGGTPs~-l~~~~l~~ll~~i~~ 131 (453)
T PRK13347 105 SQLHWGGGTPTI-LNPDQFERLMAALRD 131 (453)
T ss_pred EEEEEcCccccc-CCHHHHHHHHHHHHH
Confidence 459999999999 888877777665433
No 185
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=26.36 E-value=2.7e+02 Score=20.77 Aligned_cols=60 Identities=18% Similarity=0.149 Sum_probs=34.3
Q ss_pred CceecCCCCCCCC--CchHHHHHHH--HHHHhcCCc-ccCCCCCCCCCHHHHHHHHHHHhhhhCCCCC
Q psy782 33 KPLNLGQGFPDYE--SAPSHVSKGL--ADAATGENK-LLNQYTRGFGHPRIVQAIAKLYSSLIERPLL 95 (100)
Q Consensus 33 ~~i~l~~G~P~~~--~pp~~l~~a~--~~~~~~~~~-~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~ 95 (100)
..+||+.|++++. ...-...+++ ...++.... ..--|..+ .++.+.||+...+.+|+.++
T Consensus 342 rlvNl~~~~ghp~~vmd~sfa~q~l~~~~l~~~~~~~~~~v~~lp---~~~d~~vA~~~l~~~g~~~~ 406 (425)
T PRK05476 342 RLVNLGAATGHPSEVMDMSFANQALAQIELFTNRGKLEPGVYVLP---KELDEEVARLKLKALGVKLD 406 (425)
T ss_pred cccccCCCCCCcceeeCHHHHHHHHHHHHHHhccCcCCCCeEECC---HHHHHHHHHHHHHHcCCccc
Confidence 4788988876663 2223333333 233332211 11123222 78999999999888898765
No 186
>PF02873 MurB_C: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; InterPro: IPR011601 This entry represents a C-terminal conserved region of UDP-N-acetylenolpyruvoylglucosamine reductase 1.1.1.158 from EC, which is also called UDP-N-acetylmuramate dehydrogenase. It is a part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide, which is a precursor of bacterial peptidoglycan. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 1MBB_A 2Q85_A 2MBR_A 1UXY_A 1MBT_A 1HSK_A 2GQU_A 2GQT_A 3I99_A 3TX1_A.
Probab=26.31 E-value=63 Score=19.09 Aligned_cols=24 Identities=8% Similarity=0.112 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHhhhhCCCCCCC
Q psy782 74 GHPRIVQAIAKLYSSLIERPLLPH 97 (100)
Q Consensus 74 G~~~LR~aia~~~~~~~g~~~~~~ 97 (100)
-+.+|.+.|.+...+.+|+.+.+|
T Consensus 77 dv~~Li~~v~~~V~~~~Gi~Le~E 100 (105)
T PF02873_consen 77 DVLALIEEVRERVKEKFGIELEPE 100 (105)
T ss_dssp HHHHHHHHHHHHHHHHHS--B-BS
T ss_pred HHHHHHHHHHHHHHHHHCCeeeec
Confidence 346788888888888899988765
No 187
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=26.19 E-value=1.7e+02 Score=18.06 Aligned_cols=43 Identities=14% Similarity=0.029 Sum_probs=19.3
Q ss_pred CchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhh
Q psy782 46 SAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSS 88 (100)
Q Consensus 46 ~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~ 88 (100)
.|.+.|++.+.++-+.+......=-...+..+..++|.+...+
T Consensus 9 MP~~~Lk~l~~~a~~~g~~~VlRG~~~~~~~~T~~~i~~L~~~ 51 (130)
T TIGR02742 9 MPEPLLKQLLDQAEALGAPLVIRGLLDNGFKATATRIQSLIKD 51 (130)
T ss_pred CCHHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHhc
Confidence 3555666666555544422222111223445555555554433
No 188
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=25.91 E-value=1.7e+02 Score=21.32 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=19.0
Q ss_pred CCceecCCCCCCCCCchHHHHHHHHHHHh
Q psy782 32 HKPLNLGQGFPDYESAPSHVSKGLADAAT 60 (100)
Q Consensus 32 ~~~i~l~~G~P~~~~pp~~l~~a~~~~~~ 60 (100)
..+|++|.|+|...+..+.+.+.+.+++.
T Consensus 204 l~~ldiGGGf~~~~~~~~~~~~~i~~~l~ 232 (394)
T cd06831 204 MNMLDIGGGFTGSEIQLEEVNHVIRPLLD 232 (394)
T ss_pred CCEEEeCCCcCCCCCCHHHHHHHHHHHHH
Confidence 46899999998642333556666655554
No 189
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=25.48 E-value=1.7e+02 Score=20.78 Aligned_cols=52 Identities=10% Similarity=-0.012 Sum_probs=30.9
Q ss_pred CceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCC-------CCHHHHHHHHHHHh
Q psy782 33 KPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGF-------GHPRIVQAIAKLYS 87 (100)
Q Consensus 33 ~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~-------G~~~LR~aia~~~~ 87 (100)
+.|-|..|.-.+ +|+.+.+++.+.+.... ...+|+... .+.++|++||+++.
T Consensus 16 ~~iyld~a~~~~--~p~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~la~~~g 74 (398)
T TIGR03392 16 GTVYLDSAATAL--KPQAVIDATQQFYRLSS-GTVHRSQHQQAQSLTARYELARQQVARFLN 74 (398)
T ss_pred CeEEeeCccccC--CCHHHHHHHHHHHHhcC-CCCCCcccHHHHHHHHHHHHHHHHHHHHhC
Confidence 467777766655 55678888888775421 112232222 24568888888764
No 190
>PF15053 Njmu-R1: Mjmu-R1-like protein family
Probab=25.11 E-value=66 Score=23.33 Aligned_cols=18 Identities=28% Similarity=0.241 Sum_probs=16.4
Q ss_pred CCCCCHHHHHHHHHHHhh
Q psy782 71 RGFGHPRIVQAIAKLYSS 88 (100)
Q Consensus 71 ~~~G~~~LR~aia~~~~~ 88 (100)
|..+.++||-.||+++.+
T Consensus 46 p~E~E~eLRsfiakrlsk 63 (353)
T PF15053_consen 46 PSEAEPELRSFIAKRLSK 63 (353)
T ss_pred CccccHHHHHHHHHHHhc
Confidence 677889999999999987
No 191
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=25.09 E-value=2.3e+02 Score=20.26 Aligned_cols=53 Identities=13% Similarity=-0.028 Sum_probs=29.3
Q ss_pred ceecCCCC-CCCCCchHHHHHHHHHHHhcCCccc----CCCCCCCCCHHHHHHHHHHHh
Q psy782 34 PLNLGQGF-PDYESAPSHVSKGLADAATGENKLL----NQYTRGFGHPRIVQAIAKLYS 87 (100)
Q Consensus 34 ~i~l~~G~-P~~~~pp~~l~~a~~~~~~~~~~~~----~~Y~~~~G~~~LR~aia~~~~ 87 (100)
+++|+.=+ -.+ .+++.+++++.+.+....... .-|+...-..+|+++||+++.
T Consensus 48 ~~~~~sn~yl~l-~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g 105 (410)
T PRK13392 48 VTIWCSNDYLGM-GQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHG 105 (410)
T ss_pred EEEEECCCccCC-CCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhC
Confidence 55665532 223 355888899888876531100 123222235678888877763
No 192
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=24.90 E-value=1.5e+02 Score=19.82 Aligned_cols=29 Identities=14% Similarity=0.145 Sum_probs=17.1
Q ss_pred CCceecCCCCCCCC---CchHHHHHHHHHHHh
Q psy782 32 HKPLNLGQGFPDYE---SAPSHVSKGLADAAT 60 (100)
Q Consensus 32 ~~~i~l~~G~P~~~---~pp~~l~~a~~~~~~ 60 (100)
..+|++|.|+|-.- ..++.+.+.+.+.++
T Consensus 197 l~~idiGGG~~~~y~~~~~~~~~~~~i~~~~~ 228 (251)
T PF02784_consen 197 LEFIDIGGGFGVPYDDEYDLEEYAEVIREALK 228 (251)
T ss_dssp -SEEEEESSB-SSSSSSSCHHHHHHHHHHHHH
T ss_pred ccEEEeeCCCCCCCcccccchhHHHHHHHHHH
Confidence 67899999988651 223555555555544
No 193
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=24.88 E-value=89 Score=23.05 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=18.7
Q ss_pred CceecCCCCCCCCCchHHHHHHHHH
Q psy782 33 KPLNLGQGFPDYESAPSHVSKGLAD 57 (100)
Q Consensus 33 ~~i~l~~G~P~~~~pp~~l~~a~~~ 57 (100)
..|-||.|.|.. ..++.+.+.+..
T Consensus 89 ~ti~~GGGTPsl-L~~~~l~~ll~~ 112 (416)
T COG0635 89 KTIYFGGGTPSL-LSPEQLERLLKA 112 (416)
T ss_pred EEEEECCCcccc-CCHHHHHHHHHH
Confidence 459999999999 998766655543
No 194
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=24.67 E-value=43 Score=19.31 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=14.1
Q ss_pred HHHHHHHHHhhhhCCCCCCCCCC
Q psy782 78 IVQAIAKLYSSLIERPLLPHQLV 100 (100)
Q Consensus 78 LR~aia~~~~~~~g~~~~~~~eI 100 (100)
-++.+++++.. .|++++++ +|
T Consensus 43 s~~~~~~~L~~-~Gi~~~~~-~i 63 (101)
T PF13344_consen 43 SREEYAKKLKK-LGIPVDED-EI 63 (101)
T ss_dssp -HHHHHHHHHH-TTTT--GG-GE
T ss_pred CHHHHHHHHHh-cCcCCCcC-EE
Confidence 47888999966 69998876 54
No 195
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=24.56 E-value=91 Score=21.73 Aligned_cols=14 Identities=7% Similarity=-0.019 Sum_probs=7.5
Q ss_pred chHHHHHHHHHHHh
Q psy782 47 APSHVSKGLADAAT 60 (100)
Q Consensus 47 pp~~l~~a~~~~~~ 60 (100)
+|+.+.+++.+.+.
T Consensus 10 ~~~~v~~a~~~~~~ 23 (353)
T TIGR03235 10 IDPAVAEAMLPWLL 23 (353)
T ss_pred CCHHHHHHHHHHHH
Confidence 34555666655553
No 196
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=24.56 E-value=95 Score=22.10 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=19.0
Q ss_pred CceecCCCCCCCCCchHHHHHHHHHH
Q psy782 33 KPLNLGQGFPDYESAPSHVSKGLADA 58 (100)
Q Consensus 33 ~~i~l~~G~P~~~~pp~~l~~a~~~~ 58 (100)
..|-||.|.|.. .+++.+.+.+..+
T Consensus 53 ~~iyfGGGTPs~-l~~~~l~~ll~~i 77 (350)
T PRK08446 53 ESVFIGGGTPST-VSAKFYEPIFEII 77 (350)
T ss_pred eEEEECCCcccc-CCHHHHHHHHHHH
Confidence 579999999998 8887666555443
No 197
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=24.45 E-value=2.3e+02 Score=20.09 Aligned_cols=33 Identities=6% Similarity=-0.024 Sum_probs=21.3
Q ss_pred HHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCC
Q psy782 52 SKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIER 92 (100)
Q Consensus 52 ~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~ 92 (100)
.+++.+++..+ . ..|..++++++.+++++.+|.
T Consensus 14 ~~~~~~~l~~~---~-----~~g~~~~~~~~e~~la~~~g~ 46 (375)
T PRK11706 14 LDYIQQAMSSG---K-----LCGDGGFTRRCQQWLEQRFGS 46 (375)
T ss_pred HHHHHHHHHcC---C-----ccCCCHHHHHHHHHHHHHhCC
Confidence 56666766654 2 124556888888888776665
No 198
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=24.31 E-value=2.5e+02 Score=20.05 Aligned_cols=53 Identities=8% Similarity=0.013 Sum_probs=27.7
Q ss_pred CceecCCC-CCCCCCchHHHHHHHHHHHhcCCcccC----CCCCCCCCHHHHHHHHHHH
Q psy782 33 KPLNLGQG-FPDYESAPSHVSKGLADAATGENKLLN----QYTRGFGHPRIVQAIAKLY 86 (100)
Q Consensus 33 ~~i~l~~G-~P~~~~pp~~l~~a~~~~~~~~~~~~~----~Y~~~~G~~~LR~aia~~~ 86 (100)
++++|+.= .-.+ ...+.+.+++.+.++..+.... -|+...-..+|.++||+++
T Consensus 46 ~~~~~~sn~ylgl-~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~ 103 (402)
T TIGR01821 46 DVTVWCSNDYLGM-GQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLH 103 (402)
T ss_pred eEEEeEccCcCCC-CCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHh
Confidence 35565542 3444 4557888888888876421111 1222222355666666655
No 199
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=24.16 E-value=1.3e+02 Score=21.35 Aligned_cols=53 Identities=9% Similarity=0.007 Sum_probs=28.7
Q ss_pred CceecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCC------CCCCHHHHHHHHHHHh
Q psy782 33 KPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTR------GFGHPRIVQAIAKLYS 87 (100)
Q Consensus 33 ~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~------~~G~~~LR~aia~~~~ 87 (100)
+.+.|..+.-.+ +|+.+.+++.+.+.+.......... ...+.++|++||+++.
T Consensus 19 ~~~yld~a~~~~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g 77 (401)
T PRK10874 19 AGVYLDSAATAL--KPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLN 77 (401)
T ss_pred ceEEEeCCcccC--CCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcC
Confidence 466777666555 4567778887777543100011111 1125567777777663
No 200
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=23.89 E-value=73 Score=22.02 Aligned_cols=53 Identities=15% Similarity=0.086 Sum_probs=32.0
Q ss_pred eecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCCC
Q psy782 35 LNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIERP 93 (100)
Q Consensus 35 i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~ 93 (100)
++-+.|.|.. +-.+++++++.+++..- ..-+...|+...-.+++++|.+. |+.
T Consensus 179 Laas~G~~gn-~~hpeV~~aI~~~~~~i----~aaGKaagil~~~p~~a~~yl~l-Ga~ 231 (255)
T COG3836 179 LAASLGHLGN-PGHPEVQAAIEHIIARI----RAAGKAAGILAADPADARRYLAL-GAT 231 (255)
T ss_pred HHHHcCCCCC-CCCHHHHHHHHHHHHHH----HhcCCccccccCCHHHHHHHHHh-CCe
Confidence 4556677766 55566766666665432 12234556666667888888774 764
No 201
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=23.74 E-value=1.1e+02 Score=22.16 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=20.2
Q ss_pred CceecCCCCCCCCCchHHHHHHHHHH
Q psy782 33 KPLNLGQGFPDYESAPSHVSKGLADA 58 (100)
Q Consensus 33 ~~i~l~~G~P~~~~pp~~l~~a~~~~ 58 (100)
..|-||.|.|.. .+++.+.+.+..+
T Consensus 57 ~tiy~GGGTPs~-l~~~~L~~ll~~i 81 (380)
T PRK09057 57 TSIFFGGGTPSL-MQPETVAALLDAI 81 (380)
T ss_pred CeEEeCCCcccc-CCHHHHHHHHHHH
Confidence 579999999999 9988777666554
No 202
>PF07208 DUF1414: Protein of unknown function (DUF1414); InterPro: IPR009857 This family consists of several hypothetical bacterial proteins of around 70 residues in length. Members of this family are often referred to as YejL. The function of this family is unknown.; PDB: 2JPQ_A 2JUZ_B 2JUW_B 2QTI_A 2OTA_A 2JR2_A 2JRX_A.
Probab=23.73 E-value=99 Score=15.44 Aligned_cols=13 Identities=38% Similarity=0.516 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhh
Q psy782 76 PRIVQAIAKLYSS 88 (100)
Q Consensus 76 ~~LR~aia~~~~~ 88 (100)
++-|++||+.+.+
T Consensus 26 ~~qR~~iAe~Fa~ 38 (44)
T PF07208_consen 26 PAQRQAIAEKFAQ 38 (44)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6789999988864
No 203
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=23.49 E-value=1.3e+02 Score=20.12 Aligned_cols=14 Identities=7% Similarity=0.318 Sum_probs=11.6
Q ss_pred CCCceecCCCCCCC
Q psy782 31 DHKPLNLGQGFPDY 44 (100)
Q Consensus 31 ~~~~i~l~~G~P~~ 44 (100)
..++|++++|.+..
T Consensus 104 ~v~VIn~S~G~~~~ 117 (261)
T cd07493 104 GVDIISSSLGYTTF 117 (261)
T ss_pred CCCEEEeCCCcCCC
Confidence 45899999998866
No 204
>smart00335 ANX Annexin repeats.
Probab=23.43 E-value=65 Score=15.81 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=10.8
Q ss_pred HHHHHHHHhhhhCCCC
Q psy782 79 VQAIAKLYSSLIERPL 94 (100)
Q Consensus 79 R~aia~~~~~~~g~~~ 94 (100)
|++|...|.+.||.++
T Consensus 19 ~~~i~~~Y~~~~~~~L 34 (53)
T smart00335 19 LQAIKQAYKKRYGKDL 34 (53)
T ss_pred HHHHHHHHHHHhCccH
Confidence 6677777777777653
No 205
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=23.26 E-value=1.3e+02 Score=19.71 Aligned_cols=36 Identities=8% Similarity=-0.004 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhh
Q psy782 49 SHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSL 89 (100)
Q Consensus 49 ~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~ 89 (100)
..+++++...++....... .|-..||++|.++++..
T Consensus 127 pqIRD~Ii~~LssKt~~eL-----~Gk~~LKeEI~~rIN~i 162 (181)
T PRK06654 127 VRLKDIIREYFSQKTGQEL-----KNESQIKAEIKARINSI 162 (181)
T ss_pred HHHHHHHHHHHHhCCHHHH-----cCHHHHHHHHHHHHHHh
Confidence 4566777777776532222 28899999999999764
No 206
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=23.01 E-value=1.8e+02 Score=18.27 Aligned_cols=57 Identities=7% Similarity=0.098 Sum_probs=35.3
Q ss_pred eecCCCCCCCCCchHHHHHHHHHHHhcCC----cccCCCCCCCCCHHHHHHHHHHHhhhhCCC
Q psy782 35 LNLGQGFPDYESAPSHVSKGLADAATGEN----KLLNQYTRGFGHPRIVQAIAKLYSSLIERP 93 (100)
Q Consensus 35 i~l~~G~P~~~~pp~~l~~a~~~~~~~~~----~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~ 93 (100)
|.+..+++.- +.-+.|.+.+.++++..+ .-...+.|.+...-+-++--+++.+ ||+.
T Consensus 29 VtIt~Ty~gc-pa~e~L~~~I~~aL~~~Gv~~V~V~i~~~p~Wt~d~it~~gr~~l~~-~gia 89 (146)
T TIGR02159 29 VKFTPTYSGC-PALEVIRQDIRDAVRALGVEVVEVSTSLDPPWTTDWITEDAREKLRE-YGIA 89 (146)
T ss_pred EEEEeCCCCC-chHHHHHHHHHHHHHhcCCCeEEEeEeeCCCCChHHCCHHHHHHHHh-cCcc
Confidence 6666666666 555677777777665521 1234678888776666665555544 6764
No 207
>KOG1549|consensus
Probab=22.99 E-value=1.7e+02 Score=21.99 Aligned_cols=57 Identities=12% Similarity=0.057 Sum_probs=34.5
Q ss_pred CCceecCCCCCCCCCch---HHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhh
Q psy782 32 HKPLNLGQGFPDYESAP---SHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSL 89 (100)
Q Consensus 32 ~~~i~l~~G~P~~~~pp---~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~ 89 (100)
.+.+-|..|.-.+ .++ +.+.+.+.+.+..+.....+|-...+...-|+.||+.+...
T Consensus 42 ~~~vyld~~at~p-~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd 101 (428)
T KOG1549|consen 42 TRPVYLDNQATGP-MDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINAD 101 (428)
T ss_pred CccEEEecCcCCC-CCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCC
Confidence 3567777766555 433 45555555555554222244455556788999999988653
No 208
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=22.84 E-value=1e+02 Score=22.39 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=19.9
Q ss_pred CceecCCCCCCCCCchHHHHHHHHHH
Q psy782 33 KPLNLGQGFPDYESAPSHVSKGLADA 58 (100)
Q Consensus 33 ~~i~l~~G~P~~~~pp~~l~~a~~~~ 58 (100)
..|-||.|.|.. .+++.+.+.+..+
T Consensus 64 ~tiy~GGGTPs~-l~~~~l~~ll~~i 88 (390)
T PRK06582 64 KSIFFGGGTPSL-MNPVIVEGIINKI 88 (390)
T ss_pred eEEEECCCcccc-CCHHHHHHHHHHH
Confidence 579999999999 8887777665544
No 209
>cd00332 PAL-HAL Phenylalanine ammonia-lyase (PAL) and histidine ammonia-lyase (HAL). PAL and HAL are members of the Lyase class I_like superfamily of enzymes that, catalyze similar beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. PAL, present in plants and fungi, catalyzes the conversion of L-phenylalanine to E-cinnamic acid. HAL, found in several bacteria and animals, catalyzes the conversion of L-histidine to E-urocanic acid. Both PAL and HAL contain the cofactor 3, 5-dihydro-5-methylidene-4H-imidazol-4-one (MIO) which is formed by autocatalytic excision/cyclization of the internal tripeptide, Ala-Ser-Gly. PAL is being explored as enzyme substitution therapy for Phenylketonuria (PKU), a disorder which involves an inability to metabolize phenylalanine. HAL failure in humans results in the disease histidinemia.
Probab=22.78 E-value=2.7e+02 Score=20.89 Aligned_cols=47 Identities=11% Similarity=0.094 Sum_probs=25.8
Q ss_pred ecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhh
Q psy782 36 NLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSS 88 (100)
Q Consensus 36 ~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~ 88 (100)
+.+.|.-++ .|++.++.++.--+.. ...+|+-.. +++-+.+.+++++
T Consensus 75 sha~GvG~~-l~~~~vRa~m~~Rln~---l~~G~SGV~--~~vv~~L~~~lN~ 121 (444)
T cd00332 75 SHAAGVGPP-LPEEVVRAAMLLRLNS---LARGHSGVR--PEVLERLVALLNA 121 (444)
T ss_pred HHhcCCCCC-CCHHHHHHHHHHHHHH---hccCCCcCC--HHHHHHHHHHHhC
Confidence 344444444 5556665555433332 245565444 7777777777765
No 210
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=22.67 E-value=91 Score=20.30 Aligned_cols=40 Identities=8% Similarity=0.160 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhh
Q psy782 49 SHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLI 90 (100)
Q Consensus 49 ~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~ 90 (100)
+.+++++...++.... ..=..+.|...||++|.+++++..
T Consensus 127 p~IRD~ii~~Ls~kt~--~dL~t~~Gk~~Lk~ei~~~iN~~L 166 (182)
T PRK08455 127 PVIRDIIIRILSSKTV--EEVSTNKGKERLKDEIVGKLNEFL 166 (182)
T ss_pred hHHHHHHHHHHHcCCH--HHhcCHHHHHHHHHHHHHHHHHHh
Confidence 4567777777776532 222357899999999999997754
No 211
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=22.48 E-value=69 Score=22.64 Aligned_cols=38 Identities=11% Similarity=0.017 Sum_probs=24.7
Q ss_pred chHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHh
Q psy782 47 APSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYS 87 (100)
Q Consensus 47 pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~ 87 (100)
+.+++.+.+.+.++.- ...|+...|...+|+-+.-|++
T Consensus 251 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~rk~~~~y~~ 288 (321)
T PRK10415 251 PLAEVKRLLCAHVREL---HDFYGPAKGYRIARKHVSWYLQ 288 (321)
T ss_pred CHHHHHHHHHHHHHHH---HHHHChHHHHHHHHHHHHHHHh
Confidence 4466666666666543 3336666788888888876653
No 212
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication). Eukaryotic DNA wraps around a histone octamer to form a nucleosome, the first order of compaction of eukaryotic chromatin. The core histone octamer is composed of a central H3-H4 tetramer and two flanking H2A-H2B dimers. Each of the core histone contains a common structural motif, called the histone fold, which facilitates the interactions between the individual core histones. In addition to the core histones, there is a "linker histone" called H1 (or H5 in avian species). The linker histones present in all multicellular eukaryotes are the most divergent group of histones, with numerous cell type- and stage-specific variant. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures. Histone H5 performs the same function as histone H1, and replaces H1 in certain cells. The structure of GH5, the globular domain of the linker histone H5 is known [, ]. The fold is similar to the DNA-binding domain of the catabolite gene activator protein, CAP, thus providing a possible model for the binding of GH5 to DNA. The linker histones, which do not contain the histone fold motif, are critical to the higher-order compaction of chromatin, because they bind to internucleosomal DNA and facilitate interactions between individual nucleosomes. In addition, H1 variants have been shown to be involved in the regulation of developmental genes. A common feature of this protein family is a tripartite structure in which a globular (H15) domain of about 80 amino acids is flanked by two less structured N- and C-terminal tails. The H15 domain is also characterised by high sequence homology among the family of linker histones. The highly conserved H15 domain is essential for the binding of H1 or H5 to the nucleosome. It consists of a three helix bundle (I-III), with a beta-hairpin at the C terminus. There is also a short three-residue stretch between helices I and II that is in the beta-strand conformation. Together with the C-terminal beta-hairpin, this strand forms the third strand of an antiparallel beta-sheet [, , , ]. Proteins known to contain a H15 domain are: - Eukaryotic histone H1. The histones H1 constitute a family with many variants, differing in their affinity for chromatin. Several variants are simultaneously present in a single cell. For example, the nucleated erythrocytes of birds contain both H1 and H5, the latter being an extreme variant of H1. - Eukaryotic MHYST family of histone acetyltransferase. Histone acetyltransferases transfer an acetyl group from acetyl-CoA to the epsylon- amino group of lysine within the basic NH2-termini of histones, which bind the acidic phosphates of DNA []. This entry represents the H15 domain.; GO: 0003677 DNA binding, 0006334 nucleosome assembly, 0000786 nucleosome, 0005634 nucleus; PDB: 2LSO_A 2RQP_A 1UHM_A 1UST_A 1GHC_A 1HST_A 1YQA_A 1USS_A.
Probab=22.22 E-value=76 Score=17.28 Aligned_cols=18 Identities=33% Similarity=0.344 Sum_probs=13.9
Q ss_pred HHHHHHHHhhhhCCCCCC
Q psy782 79 VQAIAKLYSSLIERPLLP 96 (100)
Q Consensus 79 R~aia~~~~~~~g~~~~~ 96 (100)
+++|.+|+...|++.+++
T Consensus 24 ~~aI~kyI~~~y~~~~~~ 41 (77)
T PF00538_consen 24 LQAIKKYIKAKYKVDLNP 41 (77)
T ss_dssp HHHHHHHHHHHSSCCCCH
T ss_pred HHHHHHHHHHhcCcCCCh
Confidence 678899998888766554
No 213
>cd07362 HPCD_like Class III extradiol dioxygenases with similarity to homoprotocatechuate 2,3-dioxygenase, which catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. This subfamily of class III extradiol dioxygenases consists of two types of proteins with known enzymatic activities; 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) and 2-amino-5-chlorophenol 1,6-dioxygenase. HPCD catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield the product alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. 2-amino-5-chlorophenol 1,6-dioxygenase catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. The enzyme is probably a heterotetrame
Probab=22.05 E-value=1.3e+02 Score=20.71 Aligned_cols=27 Identities=11% Similarity=0.057 Sum_probs=22.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhhCCCCC
Q psy782 67 NQYTRGFGHPRIVQAIAKLYSSLIERPLL 95 (100)
Q Consensus 67 ~~Y~~~~G~~~LR~aia~~~~~~~g~~~~ 95 (100)
..| +..|.++|-+.|++.+.+. |+++.
T Consensus 84 ~~y-~~~g~~~LA~~i~~~l~~~-Gi~~~ 110 (272)
T cd07362 84 VPY-DYPGDPELGRLLVEEGQEA-GLRVK 110 (272)
T ss_pred ccc-CCCCCHHHHHHHHHHHHHc-CCcee
Confidence 367 7889999999999999774 87753
No 214
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=22.01 E-value=71 Score=18.70 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=24.5
Q ss_pred chhHHHHHHHhhcCCCceecCCCCCCCCCchHHHHHHHHH
Q psy782 18 VYSVWVEFIQLSLDHKPLNLGQGFPDYESAPSHVSKGLAD 57 (100)
Q Consensus 18 ~~~~~~~~~~~~~~~~~i~l~~G~P~~~~pp~~l~~a~~~ 57 (100)
....+..+......++++=+|.|.... ++++++.+.+.+
T Consensus 40 ~~~~l~~l~~~~p~pe~liiGtG~~~~-~~~~~~~~~l~~ 78 (110)
T PF04430_consen 40 TPEDLEELLELEPKPEVLIIGTGKRQL-FLPPELREYLRK 78 (110)
T ss_dssp ETHHHHHHHCTCCS-SEEEEEETTS-S-ECTHHHHHHHHT
T ss_pred CHHHHHHHHhccCCCcEEEEccCCccc-cCCHHHHHHHHH
Confidence 334444443343467899999999866 778888877643
No 215
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=21.93 E-value=1e+02 Score=19.41 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhC
Q psy782 49 SHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIE 91 (100)
Q Consensus 49 ~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g 91 (100)
+.+++.+...++.... ..=....|...||+.|.+.+++.++
T Consensus 103 p~IRd~ii~~Ls~k~~--~~L~~~eGk~~Lk~ei~~~in~~l~ 143 (162)
T PRK07021 103 PEVRSRLLLLLSRKHA--AELATEEGKQKLAAEIKQTLSQPLV 143 (162)
T ss_pred HHHHHHHHHHHhcCCH--HHhcCHHHHHHHHHHHHHHHHHHHh
Confidence 3566677777766522 2223567999999999999987543
No 216
>PLN02409 serine--glyoxylate aminotransaminase
Probab=21.81 E-value=78 Score=22.78 Aligned_cols=22 Identities=5% Similarity=0.129 Sum_probs=18.1
Q ss_pred CCCCHHHHHHHHHHHhhhhCCC
Q psy782 72 GFGHPRIVQAIAKLYSSLIERP 93 (100)
Q Consensus 72 ~~G~~~LR~aia~~~~~~~g~~ 93 (100)
..+..++++++.+++++.+|.+
T Consensus 37 ~~~~~~~~~~~~~~l~~~~g~~ 58 (401)
T PLN02409 37 SPAFPALTKELLEDVKYIFKTK 58 (401)
T ss_pred CHHHHHHHHHHHHHHHHHhCCC
Confidence 4577899999999998888874
No 217
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=21.73 E-value=3.1e+02 Score=19.63 Aligned_cols=58 Identities=7% Similarity=-0.078 Sum_probs=28.6
Q ss_pred CceecCCC-CCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhC
Q psy782 33 KPLNLGQG-FPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIE 91 (100)
Q Consensus 33 ~~i~l~~G-~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g 91 (100)
.+++|+.= .-.+ ...+++.+++.+.++..+....++....|..+..+++.+.+.+..|
T Consensus 46 ~~~~~~sn~ylgl-~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g 104 (406)
T PRK13393 46 EVTVWCSNDYLGM-GQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHG 104 (406)
T ss_pred cEEEeecccccCC-CCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhC
Confidence 35555432 3344 3457788888888875421111222233544444444444444444
No 218
>cd07363 45_DOPA_Dioxygenase The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated ca
Probab=21.65 E-value=1.5e+02 Score=20.04 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=20.6
Q ss_pred CCCCCHHHHHHHHHHHhhhhCCCCCC
Q psy782 71 RGFGHPRIVQAIAKLYSSLIERPLLP 96 (100)
Q Consensus 71 ~~~G~~~LR~aia~~~~~~~g~~~~~ 96 (100)
+..|.++|-+.|++.+.+. |+++..
T Consensus 75 ~~~g~~eLa~~i~~~l~~~-gi~~~~ 99 (253)
T cd07363 75 PAPGSPELAERVAELLKAA-GIPARL 99 (253)
T ss_pred CCCCCHHHHHHHHHHHHhc-CCCccc
Confidence 5789999999999999874 777653
No 219
>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.64 E-value=36 Score=20.80 Aligned_cols=23 Identities=9% Similarity=-0.042 Sum_probs=18.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhh
Q psy782 68 QYTRGFGHPRIVQAIAKLYSSLI 90 (100)
Q Consensus 68 ~Y~~~~G~~~LR~aia~~~~~~~ 90 (100)
..+-..++..||+.+++.+.+.|
T Consensus 96 ~kGK~~a~~~fr~~L~~el~~~f 118 (128)
T PF09748_consen 96 VKGKMEAFKSFRDVLAEELASAF 118 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC
Confidence 34567788999999999997754
No 220
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=21.48 E-value=1e+02 Score=19.65 Aligned_cols=37 Identities=11% Similarity=0.075 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhh
Q psy782 50 HVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSS 88 (100)
Q Consensus 50 ~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~ 88 (100)
.+++.+...++.... ..=..+.|...||++|.++++.
T Consensus 112 ~IRd~i~~~Ls~k~~--~~L~~~~gk~~Lr~el~~~i~~ 148 (170)
T PRK05696 112 LIESALLMTFSSATV--DQLSTPAGKEELRQKALASVQE 148 (170)
T ss_pred HHHHHHHHHHhcCCH--HHhcCHHHHHHHHHHHHHHHHH
Confidence 466777777776532 2223567899999999887764
No 221
>PF05002 SGS: SGS domain ; InterPro: IPR007699 This domain was thought to be unique to the SGT1-like proteins, but is also found in calcyclin binding proteins. Sgt1p is a highly conserved eukaryotic protein that is required for both SCF (Skp1p/Cdc53p-Cullin-F-box)-mediated ubiquitination and kinetochore function in yeast and also plays a role in the cAMP pathway. Calcyclin (S100A6) is a member of the S100A family of calcium binding proteins and appears to play a role in cell proliferation [].; PDB: 1X5M_A 2JTT_D.
Probab=21.35 E-value=47 Score=18.85 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=14.0
Q ss_pred CCCHHHHHHHHHHHhhhhCCCCC
Q psy782 73 FGHPRIVQAIAKLYSSLIERPLL 95 (100)
Q Consensus 73 ~G~~~LR~aia~~~~~~~g~~~~ 95 (100)
.|..+-|++|++-+.+..|.-++
T Consensus 36 ~gDDe~KRam~KSf~ES~GT~LS 58 (82)
T PF05002_consen 36 NGDDEMKRAMMKSFTESQGTVLS 58 (82)
T ss_dssp TS-SCHHHHHHHHHHCT------
T ss_pred cCCHHHHHHHHHHHHHcCCcccc
Confidence 46678999999999888776544
No 222
>PF06099 Phenol_hyd_sub: Phenol hydroxylase subunit; InterPro: IPR010353 This family consists of several bacterial phenol hydroxylase subunit proteins, which are part of a multicomponent phenol hydroxylase. Some bacteria can utilise phenol or some of its methylated derivatives as their sole source of carbon and energy. The first step in this process is the conversion of phenol into catechol. Catechol is then further metabolised via the meta-cleavage pathway into TCA cycle intermediates [].
Probab=21.15 E-value=46 Score=17.73 Aligned_cols=10 Identities=20% Similarity=0.531 Sum_probs=8.6
Q ss_pred eecCCCCCCC
Q psy782 35 LNLGQGFPDY 44 (100)
Q Consensus 35 i~l~~G~P~~ 44 (100)
.+|++|+|..
T Consensus 25 FeFaIG~PeL 34 (59)
T PF06099_consen 25 FEFAIGDPEL 34 (59)
T ss_pred EEEecCCcce
Confidence 6799999976
No 223
>PF06348 DUF1059: Protein of unknown function (DUF1059); InterPro: IPR009409 This entry consists of short hypothetical archaeal and bacterial proteins of unknown function.
Probab=21.11 E-value=1.4e+02 Score=15.42 Aligned_cols=35 Identities=9% Similarity=0.041 Sum_probs=22.9
Q ss_pred chHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHh
Q psy782 47 APSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYS 87 (100)
Q Consensus 47 pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~ 87 (100)
.-++|.+.+.+.++.. +++.... ++|++.|-..+.
T Consensus 21 tedEll~~~~~Ha~~~----Hg~~~~~--~el~~~ir~~I~ 55 (57)
T PF06348_consen 21 TEDELLEAVVEHAREV----HGMTEIP--EELREKIRSAIK 55 (57)
T ss_pred CHHHHHHHHHHHHHHh----cCCccCC--HHHHHHHHHHhh
Confidence 4478888887777653 5554333 678888766553
No 224
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=21.10 E-value=1.5e+02 Score=15.67 Aligned_cols=40 Identities=15% Similarity=0.161 Sum_probs=27.8
Q ss_pred CchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhCCC
Q psy782 46 SAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIERP 93 (100)
Q Consensus 46 ~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~ 93 (100)
..|+.+.++++.-+...+ .+-|| .-+-.|||.++-+. |+.
T Consensus 5 eiPe~L~~~m~~fie~hP-~WDQ~------Rl~~aALa~FL~Qn-G~~ 44 (57)
T PF10929_consen 5 EIPEDLHQAMKDFIETHP-NWDQY------RLFQAALAGFLLQN-GCQ 44 (57)
T ss_pred cccHHHHHHHHHHHHcCC-CchHH------HHHHHHHHHHHHHc-Cch
Confidence 457888899988887642 45555 34667888888774 653
No 225
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=20.51 E-value=2.6e+02 Score=19.93 Aligned_cols=53 Identities=13% Similarity=-0.013 Sum_probs=28.5
Q ss_pred CceecCCCCCCCCCchHHHHHHHHHHHhcCCccc--CCCC----CCCCCHHHHHHHHHHHh
Q psy782 33 KPLNLGQGFPDYESAPSHVSKGLADAATGENKLL--NQYT----RGFGHPRIVQAIAKLYS 87 (100)
Q Consensus 33 ~~i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~--~~Y~----~~~G~~~LR~aia~~~~ 87 (100)
++|-|..+.-.+ +|+.+.+++.+.+....... ..|. ...-..++|++||+++.
T Consensus 23 ~~iYld~a~~~~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~ 81 (406)
T PRK09295 23 PLAYLDSAASAQ--KPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFIN 81 (406)
T ss_pred ceEEEeCccccc--CCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcC
Confidence 456776665544 55667788877775431000 0010 01114578888887764
No 226
>PF00221 Lyase_aromatic: Aromatic amino acid lyase; InterPro: IPR001106 This entry represents phenylalanine ammonia-lyase (PAL; 4.3.1.24 from EC) and the mechanistically related protein histidine ammonia lyase (HAL; 4.3.1.3 from EC). Both contain a catalytic Ala-Ser-Gly triad that is post-translationally cyclised []. PAL is a key biosynthetic catalyst in phenylpropanoid assembly in plants and fungi, and is involved in the biosynthesis of a wide variety of secondary metabolites such as flavanoids, furanocoumarin phytoalexins and cell wall components. These compounds are important for normal growth and in responses to environmental stress. HAL catalyses the first step in histidine degradation, the removal of an ammonia group from histidine to produce urocanic acid. The core domain in PAL and Hal share about 30% sequence identity, with PAL containing an additional approximately 160 residues extending from the common fold [].; GO: 0016841 ammonia-lyase activity, 0009058 biosynthetic process; PDB: 2RJR_A 2RJS_A 2OHY_B 3KDZ_B 2QVE_A 3KDY_A 2NYF_A 2YII_B 1Y2M_B 1T6P_B ....
Probab=20.23 E-value=79 Score=23.85 Aligned_cols=48 Identities=15% Similarity=0.205 Sum_probs=25.9
Q ss_pred eecCCCCCCCCCchHHHHHHHHHHHhcCCcccCCCCCCCCCHHHHHHHHHHHhh
Q psy782 35 LNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSS 88 (100)
Q Consensus 35 i~l~~G~P~~~~pp~~l~~a~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~ 88 (100)
.+.+.|...+ +|++.++.++.--+.. ...+|+-.. +++-+.+++.+++
T Consensus 79 ~~h~~gvG~~-l~~~~vRa~m~~Rln~---l~~G~SGv~--~e~v~~l~~~ln~ 126 (473)
T PF00221_consen 79 RSHAAGVGPP-LPPEVVRAAMLLRLNS---LARGYSGVR--PELVERLVEMLNR 126 (473)
T ss_dssp HHH---EEEE-B-HHHHHHHHHHHHHH---HTTSTS-----HHHHHHHHHHHHH
T ss_pred HhhccccccC-CCHHHHHHHHHHHHHH---HccCCCccC--HHHHHHHHHHHhC
Confidence 3445555555 6666666665433333 256777665 8888888888876
Done!