RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy782
(100 letters)
>gnl|CDD|215089 PLN00175, PLN00175, aminotransferase family protein; Provisional.
Length = 413
Score = 47.2 bits (112), Expect = 2e-07
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 13 RFEASVYSVWVEFIQLSLDHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRG 72
R E +++ + L++ H +NLGQGFP+++ P V K A A + K NQY RG
Sbjct: 35 RLEKFKTTIFTQMSSLAIKHGAINLGQGFPNFD-GPDFV-KEAAIQAIRDGK--NQYARG 90
Query: 73 FGHPRIVQAIAK 84
FG P + AIA+
Sbjct: 91 FGVPELNSAIAE 102
>gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated.
Length = 387
Score = 41.6 bits (98), Expect = 1e-05
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 20 SVWVEFIQLSLDHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIV 79
+++ E L++ +NLGQGFPD E P + + +A G NQY G G P +
Sbjct: 12 TIFAEMSALAVRTGAVNLGQGFPD-EDGPPEMLEAAQEAIAGGV---NQYPPGPGIPELR 67
Query: 80 QAIA 83
AIA
Sbjct: 68 AAIA 71
>gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated.
Length = 386
Score = 40.3 bits (95), Expect = 3e-05
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 27 QLSLDHKPLNLGQGFPDYESAPSHVSKGLADA-ATGENKLLNQYTRGFGHPRIVQAIA 83
L+ +H +NL QGFPD++ P ++ + LA A A G NQY G + +AIA
Sbjct: 25 ALAAEHGAINLSQGFPDFD-GPPYLVEALAYAMAAG----HNQYPPMTGVAALREAIA 77
>gnl|CDD|181580 PRK08912, PRK08912, hypothetical protein; Provisional.
Length = 387
Score = 39.2 bits (92), Expect = 9e-05
Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 27 QLSLDHKPLNLGQGFPDYESAPSHVSKGLADA-ATGENKLLNQYTRGFGHPRIVQAIAKL 85
QL+ +H +NLGQGFPD P V + ADA G NQY G P + QA+A
Sbjct: 21 QLAREHGAINLGQGFPDDP-GPEDVRRAAADALLDGS----NQYPPMMGLPELRQAVAAH 75
Query: 86 Y 86
Y
Sbjct: 76 Y 76
>gnl|CDD|181219 PRK08068, PRK08068, transaminase; Reviewed.
Length = 389
Score = 37.6 bits (88), Expect = 3e-04
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 10 LPPRFEASVYSVWVEFIQ--LSLDHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLN 67
LP +F AS+ V + ++ H +NLGQG PD + P H+ + L +AA EN +
Sbjct: 12 LPKQFFASL----VAKVNKKVAEGHDVINLGQGNPD-QPTPEHIVEALQEAA--ENPANH 64
Query: 68 QYTRGFGHPRIVQAIAKLY 86
+Y+ G+P + +A A Y
Sbjct: 65 KYSPFRGYPFLKEAAADFY 83
>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I).
Pyridoxal phosphate combines with an alpha-amino acid
to form a compound called a Schiff base or aldimine
intermediate, which depending on the reaction, is the
substrate in four kinds of reactions (1) transamination
(movement of amino groups), (2) racemization
(redistribution of enantiomers), (3) decarboxylation
(removing COOH groups), and (4) various side-chain
reactions depending on the enzyme involved. Pyridoxal
phosphate (PLP) dependent enzymes were previously
classified into alpha, beta and gamma classes, based on
the chemical characteristics (carbon atom involved) of
the reaction they catalyzed. The availability of
several structures allowed a comprehensive analysis of
the evolutionary classification of PLP dependent
enzymes, and it was found that the functional
classification did not always agree with the
evolutionary history of these enzymes. The major groups
in this CD corresponds to Aspartate aminotransferase a,
b and c, Tyrosine, Alanine, Aromatic-amino-acid,
Glutamine phenylpyruvate,
1-Aminocyclopropane-1-carboxylate synthase,
Histidinol-phosphate, gene products of malY and cobC,
Valine-pyruvate aminotransferase and Rhizopine
catabolism regulatory protein.
Length = 350
Score = 36.9 bits (86), Expect = 5e-04
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 35 LNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYS 87
++L G PD+ P + A AA L Y G P + +AIA+
Sbjct: 1 IDLSIGEPDFPPPPEVL---EALAAAALRAGLLGYYPDPGLPELREAIAEWLG 50
>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase
[Amino acid transport and metabolism].
Length = 393
Score = 34.2 bits (79), Expect = 0.005
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 12 PRFEASVYSVWVEFIQLSLDHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTR 71
P + +V + +L ++L G PD+ P H+ + +A + YT
Sbjct: 8 PSYTFAVLAEAKAAAELKGKEDVIDLSIGEPDFP-TPEHIIEAAIEAL---EEGGTHYTP 63
Query: 72 GFGHPRIVQAIAKLYS 87
G P + +AIA+ Y
Sbjct: 64 SAGIPELREAIAEKYK 79
>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 357
Score = 31.9 bits (73), Expect = 0.027
Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 33 KPLNLGQGFPDYESAPS-HVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYS 87
+NLG +S V+K DA N Y G P + +A+AK
Sbjct: 2 DKINLGSNEYLGDSGTLPAVAKAEKDA--LAGGTRNLYGPTDGLPELREALAKFLG 55
>gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional.
Length = 384
Score = 29.3 bits (66), Expect = 0.30
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 35 LNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSS 88
++L G PD + S ++ DA G + YT G +++ I K YS
Sbjct: 32 IDLSLGDPDLITDESIINAAFEDAKKGHTR----YTDSGGDVELIEEIIKYYSK 81
>gnl|CDD|183514 PRK12414, PRK12414, putative aminotransferase; Provisional.
Length = 384
Score = 28.6 bits (64), Expect = 0.50
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 27 QLSLDHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIA 83
QL+ H LNL QG P++ P+ V G+A A + NQY G + +A+A
Sbjct: 24 QLAAQHDALNLSQGAPNFAPDPALVE-GVARAMRDGH---NQYAPMAGIAALREALA 76
>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine
triphosphatases (GTPases). Rho3 is a member of the Rho
family found only in fungi. Rho3 is believed to
regulate cell polarity by interacting with the
diaphanous/formin family protein For3 to control both
the actin cytoskeleton and microtubules. Rho3 is also
believed to have a direct role in exocytosis that is
independent of its role in regulating actin polarity.
The function in exocytosis may be two-pronged: first,
in the transport of post-Golgi vesicles from the mother
cell to the bud, mediated by myosin (Myo2); second, in
the docking and fusion of vesicles to the plasma
membrane, mediated by an exocyst (Exo70) protein. Most
Rho proteins contain a lipid modification site at the
C-terminus, with a typical sequence motif CaaX, where a
= an aliphatic amino acid and X = any amino acid. Lipid
binding is essential for membrane attachment, a key
feature of most Rho proteins.
Length = 185
Score = 26.4 bits (58), Expect = 2.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 55 LADAATGENKLLNQYTRGF 73
L D A G+ LLN +TRG+
Sbjct: 6 LGDGACGKTSLLNVFTRGY 24
>gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding
HTH domain and an aminotransferase domain (MocR family)
and their eukaryotic orthologs [Transcription / Amino
acid transport and metabolism].
Length = 459
Score = 26.1 bits (58), Expect = 2.9
Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 34 PLNLGQGFPDYESAP-SHVSKGLA-DAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIE 91
++ G PD P + + LA L QY G P + +AIA +
Sbjct: 91 VIDFAGGLPDPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRG 150
Query: 92 RPLLPHQLV 100
P Q+V
Sbjct: 151 ISCEPEQIV 159
>gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional.
Length = 394
Score = 26.3 bits (59), Expect = 3.1
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 40 GFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAK 84
G P P+ V + L + A E+ L+ Y G+P + +AIA+
Sbjct: 41 GNPSVP-PPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAE 84
>gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase [Coenzyme metabolism].
Length = 449
Score = 26.0 bits (58), Expect = 3.8
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 72 GFGHPRIVQAIAK 84
G G P I +AI K
Sbjct: 59 GHGRPEIAEAIKK 71
>gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family
aminotransferase. This subfamily of pyridoxal
phosphate-dependent enzymes includes known examples of
both tyrosine aminotransferase from animals and
nicotianamine aminotransferase from barley.
Length = 403
Score = 25.8 bits (57), Expect = 4.4
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 34 PLNLGQG--FPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIE 91
PL+ G F + + P +G+ N Y G +A+A+ SS +
Sbjct: 35 PLSHGDPSVFGNLRTDPEAEEAVKDALRSGK---FNGYAPSVGALAAREAVAEYLSSDLP 91
Query: 92 RPLLPHQLV 100
L +V
Sbjct: 92 GKLTADDVV 100
>gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III.
Length = 338
Score = 25.3 bits (56), Expect = 5.4
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 72 GFGHPRIVQAIAKLYSSL--IERPLLPH 97
G HP+IVQA+ + L
Sbjct: 31 GHCHPKIVQAVKEQADKLTHTSFRAFTT 58
>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase;
Provisional.
Length = 433
Score = 25.4 bits (56), Expect = 5.8
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 11/33 (33%)
Query: 52 SKGLADAATGENKLLNQYTRGFGHPRIVQAIAK 84
+ G+A A G HP++VQAI +
Sbjct: 49 TSGIAVANVGHR-----------HPKVVQAIKE 70
>gnl|CDD|218986 pfam06317, Arena_RNA_pol, Arenavirus RNA polymerase. This family
consists of several Arenavirus RNA polymerase proteins
(EC:2.7.7.48).
Length = 2206
Score = 25.4 bits (56), Expect = 6.6
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 72 GFGHPRIVQAIAKLYSSLIERPLLP 96
G H ++ +I + Y L E LLP
Sbjct: 1729 GMNH--VLHSIRRNYPKLFEEHLLP 1751
>gnl|CDD|180937 PRK07337, PRK07337, aminotransferase; Validated.
Length = 388
Score = 25.4 bits (56), Expect = 6.9
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 37 LGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSS 88
+G G PD+ +AP V + A A + + QYT G + +AIA Y+
Sbjct: 35 MGIGEPDF-TAPEPVVEAAARAL---RRGVTQYTSALGLAPLREAIAAWYAR 82
>gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional.
Length = 387
Score = 25.0 bits (55), Expect = 7.4
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 40 GFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSS 88
G PD+ +A V+ G A A G + YT G P + +AIA Y+
Sbjct: 40 GEPDFTTAEPIVAAGQAALAAGHTR----YTAARGLPALREAIAGFYAQ 84
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.395
Gapped
Lambda K H
0.267 0.0664 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,977,315
Number of extensions: 393348
Number of successful extensions: 305
Number of sequences better than 10.0: 1
Number of HSP's gapped: 300
Number of HSP's successfully gapped: 31
Length of query: 100
Length of database: 10,937,602
Length adjustment: 66
Effective length of query: 34
Effective length of database: 8,010,238
Effective search space: 272348092
Effective search space used: 272348092
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)