RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy782
(100 letters)
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic
acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP;
HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB:
1yiy_A* 2r5c_A* 2r5e_A*
Length = 429
Score = 96.6 bits (241), Expect = 2e-25
Identities = 54/95 (56%), Positives = 69/95 (72%), Gaps = 1/95 (1%)
Query: 2 SSQASKFALPPRFEASVYSVWVEFIQLSLDHKPLNLGQGFPDYESAPSHVSKGLADAATG 61
+ +KF LP R++ S SVWVE+IQL+ +KPLNLGQGFPDY AP + LA AA
Sbjct: 7 ETMHNKFDLPKRYQGSTKSVWVEYIQLAAQYKPLNLGQGFPDYH-APKYALNALAAAANS 65
Query: 62 ENKLLNQYTRGFGHPRIVQAIAKLYSSLIERPLLP 96
+ L NQYTRGFGHPR+VQA++KLYS L++R + P
Sbjct: 66 PDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINP 100
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: LLP; 1.50A {Homo sapiens}
PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Length = 422
Score = 87.4 bits (217), Expect = 6e-22
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 6 SKFALPPRFEASVYSVWVEFIQLSLDHKPLNLGQGFPDYESAPSHVSKGLADAATGENKL 65
+K R + Y+ WVEF++L+ +H +NLGQGFPD+ P + A + + +
Sbjct: 2 AKQLQARRLDGIDYNPWVEFVKLASEHDVVNLGQGFPDFP-PPDFAVEAFQHAVS-GDFM 59
Query: 66 LNQYTRGFGHPRIVQAIAKLYSSLIERPLLP 96
LNQYT+ FG+P + + +A + L+ + + P
Sbjct: 60 LNQYTKTFGYPPLTKILASFFGELLGQEIDP 90
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: GLN PMP; 2.26A {Mus
musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Length = 410
Score = 83.1 bits (206), Expect = 2e-20
Identities = 38/77 (49%), Positives = 54/77 (70%), Gaps = 3/77 (3%)
Query: 20 SVWVEFIQLSLDHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIV 79
+VWVEF +L+ D +NLGQGFPD PS+V + L+ AA +N +NQYTRGFGHP +V
Sbjct: 11 NVWVEFTKLAADPSVVNLGQGFPDIS-PPSYVKEELSKAAFIDN--MNQYTRGFGHPALV 67
Query: 80 QAIAKLYSSLIERPLLP 96
+A++ LY + +R + P
Sbjct: 68 KALSCLYGKIYQRQIDP 84
>1v2d_A Glutamine aminotransferase; PLP, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1
PDB: 1v2e_A* 1v2f_A*
Length = 381
Score = 78.8 bits (195), Expect = 4e-19
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 10 LPPRFEASVYSVWVEFIQLSLDHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQY 69
L PR EA+ S++ L+ +NLGQGFP P + + + A + +QY
Sbjct: 3 LHPRTEAAKESIFPRMSGLAQRLGAVNLGQGFPSNP-PPPFLLEAVRRALGRQ----DQY 57
Query: 70 TRGFGHPRIVQAIAKLYS 87
G P + +A+A+ ++
Sbjct: 58 APPAGLPALREALAEEFA 75
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP;
2.35A {Escherichia coli} SCOP: c.67.1.1
Length = 386
Score = 76.8 bits (190), Expect = 3e-18
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 1 MSSQASKFALPPRFEASVYSVWVEFIQLSLDHKPLNLGQGFPDYESAPSHVSKGLADAAT 60
M++ + + +++ + L+ H+ +NL QGFPD++ P ++ + LA
Sbjct: 1 MTN--NPLIPQSKLPQLGTTIFTQMSALAQQHQAINLSQGFPDFD-GPRYLQERLAHHVA 57
Query: 61 GENKLLNQYTRGFGHPRIVQAIAKLYSSLIERPLLP 96
NQY G + +AIA+ L
Sbjct: 58 QGA---NQYAPMTGVQALREAIAQKTERLYGYQPDA 90
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding
enzyme, lysine biosynthesis, aminotransferase, S
genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Length = 411
Score = 75.0 bits (185), Expect = 1e-17
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 9 ALPPRFEASVYSVWVEFIQLSLDHKPLNLGQGFPDYESAPSHVSKGLADAATGENKLLNQ 68
A R +V+ E L+ +NLGQGFPD + P + + DA G NQ
Sbjct: 2 ATVSRLRPYATTVFAEMSALATRIGAVNLGQGFPDED-GPPKMLQAAQDAIAGGV---NQ 57
Query: 69 YTRGFGHPRIVQAIAKLYSSLIERPLLP 96
Y G G + +AIA P
Sbjct: 58 YPPGPGSAPLRRAIAAQRRRHFGVDYDP 85
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP,
cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP;
2.00A {Saccharomyces cerevisiae}
Length = 447
Score = 74.7 bits (184), Expect = 2e-17
Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 13/110 (11%)
Query: 1 MSSQASKFALPPRFEASVY-SVWVEFIQLSLD---------HKPLNLGQGFPDYESAPSH 50
MS+ K F ++ VW + + + +NLGQGF Y P
Sbjct: 16 MSTSRPKVVANKYFTSNTAKDVWSLTNEAAAKAANNSKNQGRELINLGQGFFSYS-PPQF 74
Query: 51 VSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIERPLLPHQLV 100
K A +NQY+ G P ++ ++ KLYS + L +
Sbjct: 75 AIKEAQKALDIPM--VNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVT 122
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.17
Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 35/61 (57%)
Query: 4 QASKFALPPRFEASV--YSVWVEFIQLSLDHKPLNLGQGFPDYESAPSHVSKGLADAATG 61
QA K + +AS+ Y+ D SAP+ LA AT
Sbjct: 20 QALK-----KLQASLKLYA---------------------DD--SAPA-----LAIKATM 46
Query: 62 E 62
E
Sbjct: 47 E 47
Score = 27.2 bits (59), Expect = 0.64
Identities = 6/17 (35%), Positives = 9/17 (52%), Gaps = 2/17 (11%)
Query: 80 QAIAKLYSSLIERPLLP 96
QA+ KL +SL +
Sbjct: 20 QALKKLQASL--KLYAD 34
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center
for structural genomics, JCSG, prote structure
initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter
arcticus 273-4}
Length = 444
Score = 28.1 bits (63), Expect = 0.38
Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 10/62 (16%)
Query: 36 NLGQGFPDYESAPSHV----------SKGLADAATGENKLLNQYTRGFGHPRIVQAIAKL 85
LG G P A + + A + + Y+ G + A+
Sbjct: 36 MLGGGNPAKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGF 95
Query: 86 YS 87
++
Sbjct: 96 FN 97
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Salmonella
typhimurium}
Length = 417
Score = 28.0 bits (63), Expect = 0.43
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 3/68 (4%)
Query: 36 NLGQGFPDYESAPSHVSKGLADAATGENKLLN---QYTRGFGHPRIVQAIAKLYSSLIER 92
LG G P + A + L K + Y G ++ A+A L +
Sbjct: 35 MLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGW 94
Query: 93 PLLPHQLV 100
+ P +
Sbjct: 95 DIEPQNIA 102
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate
aminotransferase, archaea, thermococcus L transferase;
HET: PMP; 2.30A {Thermococcus litoralis}
Length = 407
Score = 27.2 bits (61), Expect = 1.00
Identities = 15/65 (23%), Positives = 23/65 (35%)
Query: 36 NLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIERPLL 95
+L G PD E P V +A + YT G P + + +A +
Sbjct: 38 SLAAGDPDPELIPRAVLGEIAKEVLEKEPKSVMYTPANGIPELREELAAFLKKYDHLEVS 97
Query: 96 PHQLV 100
P +V
Sbjct: 98 PENIV 102
>2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI,
protein structure initiative, NEW research center for
structural genomics; 2.25A {Escherichia coli} SCOP:
c.1.10.7
Length = 420
Score = 26.2 bits (57), Expect = 1.8
Identities = 5/28 (17%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 73 FGHPRIVQAIAKLYSSLIERPLLPHQLV 100
+ H RI ++ + +L +P ++
Sbjct: 353 WPHSRIKNSVETMMVNLQGVD-IPLGMI 379
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, biotin biosynthesis, pyridoxal
phosphate, adenosyl-L-methionine; HET: PLP; 1.90A
{Bacillus subtilis} PDB: 3drd_A 3du4_A*
Length = 448
Score = 26.0 bits (58), Expect = 2.6
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 72 GFGHPRIVQAIAK 84
G + AI K
Sbjct: 59 GHRKKELDDAIKK 71
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting
protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles
gambiae}
Length = 358
Score = 25.7 bits (56), Expect = 2.8
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 26 IQLSLDHKPLN 36
QLS+DH LN
Sbjct: 191 TQLSVDHNLLN 201
>3txv_A Probable tagatose 6-phosphate kinase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.80A {Sinorhizobium meliloti}
Length = 450
Score = 25.4 bits (55), Expect = 4.0
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 73 FGHPRIVQAIAKLYSSLIERPLLPHQLV 100
+ HP+ A+ +L S L +P L+
Sbjct: 361 WPHPKAAAAVDELMSLLDGVA-IPETLI 387
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate
synthase, structural genomics, structural genomics
consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium
parvum} PDB: 2o1o_A* 2q58_A*
Length = 368
Score = 25.1 bits (55), Expect = 4.0
Identities = 7/58 (12%), Positives = 18/58 (31%), Gaps = 10/58 (17%)
Query: 35 LNLGQGFPDYESAPSHVSKGLADAATGENKLLNQYTRGFGHPRIVQAIAKLYSSLIER 92
L + + + +Y+ +A KL+ T + I ++ +
Sbjct: 311 LKINEHYLEYQR----------NALDYLIKLVKDITDDSLQKVFIHLIHQISELITNS 358
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein
structure initiative, NEW YORK structural research
consortium, nysgxrc; 2.71A {Toxoplasma gondii}
Length = 377
Score = 25.4 bits (55), Expect = 4.1
Identities = 4/9 (44%), Positives = 4/9 (44%)
Query: 26 IQLSLDHKP 34
I LS H
Sbjct: 187 IHLSTPHTA 195
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium,
sulfate structural genomics, PSI-2, protein structure
initiative; 1.90A {Toxoplasma gondii}
Length = 364
Score = 25.4 bits (55), Expect = 4.1
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 26 IQLSLDHKP 34
+LS DHKP
Sbjct: 195 TRLSKDHKP 203
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting
protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding
protein, protein binding; 2.25A {Homo sapiens} PDB:
2pom_A 2pop_A
Length = 401
Score = 25.3 bits (55), Expect = 4.3
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 26 IQLSLDHKPLN 36
QL++DH N
Sbjct: 201 TQLNVDHTTEN 211
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics,
protein structure initiative; 2.04A {Toxoplasma gondii}
Length = 324
Score = 25.0 bits (55), Expect = 4.3
Identities = 5/9 (55%), Positives = 7/9 (77%)
Query: 26 IQLSLDHKP 34
L++DHKP
Sbjct: 173 EFLTVDHKP 181
>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A
{Vibrio fluvialis}
Length = 478
Score = 25.2 bits (56), Expect = 4.4
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 72 GFGHPRIVQAIAK 84
GF H ++ A
Sbjct: 76 GFDHKGLIDAAKA 88
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet,
transaminase, pyridox phosphate; HET: PLP; 1.40A
{Pseudomonas putida}
Length = 449
Score = 25.2 bits (56), Expect = 4.5
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 72 GFGHPRIVQAIAK 84
G I +A+AK
Sbjct: 65 GHTRKEIQEAVAK 77
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent
transferase-like fold, ST genomics, joint center for
structural genomics, JCSG; HET: MSE LLP PLP; 1.55A
{Mesorhizobium loti} PDB: 3fcr_A*
Length = 460
Score = 24.9 bits (55), Expect = 5.1
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 72 GFGHPRIVQAIAK 84
G+G +I AIA
Sbjct: 66 GYGRQKIADAIAT 78
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal
phosphate, PSI-2, protein structure initiative; 2.10A
{Silicibacter pomeroyi}
Length = 472
Score = 24.9 bits (55), Expect = 5.4
Identities = 3/13 (23%), Positives = 7/13 (53%)
Query: 72 GFGHPRIVQAIAK 84
G+G + + A+
Sbjct: 70 GYGRDELAEVAAR 82
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase
fold type I; HET: TA8; 1.35A {Chromobacterium
violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Length = 459
Score = 24.9 bits (55), Expect = 5.8
Identities = 3/13 (23%), Positives = 6/13 (46%)
Query: 72 GFGHPRIVQAIAK 84
G+G +A +
Sbjct: 65 GYGRKDFAEAARR 77
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, csgid; 2.05A {Bacillus anthracis}
Length = 452
Score = 24.8 bits (55), Expect = 6.2
Identities = 4/13 (30%), Positives = 7/13 (53%)
Query: 72 GFGHPRIVQAIAK 84
G+G + +A K
Sbjct: 64 GYGRKELAEAAYK 76
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target
11246C, pyridoxal phosphate, PSI-2, protein structure
initiative; 1.70A {Deinococcus radiodurans}
Length = 430
Score = 24.8 bits (55), Expect = 6.5
Identities = 3/13 (23%), Positives = 6/13 (46%)
Query: 72 GFGHPRIVQAIAK 84
G G + + +A
Sbjct: 44 GHGRAEVGERMAA 56
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST
genomics, protein structure initiative; HET: PLP; 2.00A
{Rhodobacter sphaeroides 2}
Length = 476
Score = 24.9 bits (55), Expect = 6.5
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 72 GFGHPRIVQAIAK 84
G+G IV A+A
Sbjct: 69 GYGRREIVDAMAH 81
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP:
c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Length = 190
Score = 24.4 bits (53), Expect = 7.0
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 74 GHPRIVQAIAKLYSSLIERPLLPHQ 98
P I +AK L+ L H
Sbjct: 162 AQPFIADWMAKQLQPLVNHDSLEHH 186
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2,
protein structure initiative, NEW YORK SGX research
center for structural genomics; 2.25A {Homo sapiens}
Length = 274
Score = 24.6 bits (54), Expect = 7.4
Identities = 4/11 (36%), Positives = 8/11 (72%)
Query: 26 IQLSLDHKPLN 36
++L++DH P
Sbjct: 135 MKLTIDHTPER 145
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted
catalysis, dehydrogenase phosphatase, hydrolase; 2.38A
{Homo sapiens} PDB: 3qht_A 1l2n_A
Length = 389
Score = 24.5 bits (53), Expect = 7.7
Identities = 4/11 (36%), Positives = 8/11 (72%)
Query: 26 IQLSLDHKPLN 36
++L++DH P
Sbjct: 249 MKLTIDHTPER 259
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin,
hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1
d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A
Length = 382
Score = 24.4 bits (53), Expect = 7.9
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 26 IQLSLDHKPLN 36
+ DHKP N
Sbjct: 158 HFFTQDHKPSN 168
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain,
PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C
protein phosphatase; HET: A8S; 1.80A {Arabidopsis
thaliana} PDB: 3ujg_B 3nmt_B* 3rt0_A 3kb3_B*
Length = 337
Score = 24.5 bits (53), Expect = 8.2
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 24 EFIQLSLDHKP 34
E + LS+DHKP
Sbjct: 182 EAMPLSVDHKP 192
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 24.2 bits (53), Expect = 8.4
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 11 PPRFEASVYSVWVE 24
PP+F S+Y V
Sbjct: 212 PPKFAQSLYHFSVP 225
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase;
HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP:
c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A*
1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A*
1d7r_A* 1d7v_A* 1z3z_A*
Length = 433
Score = 24.4 bits (54), Expect = 8.6
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 72 GFGHPRIVQAIAK 84
G HP IV I +
Sbjct: 58 GHCHPEIVSVIGE 70
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.395
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,446,464
Number of extensions: 69963
Number of successful extensions: 214
Number of sequences better than 10.0: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 43
Length of query: 100
Length of database: 6,701,793
Length adjustment: 66
Effective length of query: 34
Effective length of database: 4,859,007
Effective search space: 165206238
Effective search space used: 165206238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)