Query psy7821
Match_columns 231
No_of_seqs 249 out of 489
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 19:47:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7821.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7821hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_P 60S ribosomal protein L 100.0 5.2E-79 1.8E-83 526.9 10.5 185 1-231 1-204 (204)
2 4a17_L RPL15, ribosomal protei 100.0 6.4E-77 2.2E-81 514.2 7.6 159 70-231 1-204 (204)
3 1vq8_M 50S ribosomal protein L 100.0 1.3E-73 4.6E-78 490.2 10.5 175 1-221 2-193 (194)
4 3j21_M 50S ribosomal protein L 100.0 1.8E-72 6.2E-77 483.4 9.2 175 1-221 1-192 (194)
5 3jyw_L 60S ribosomal protein L 100.0 8.9E-72 3E-76 478.5 5.8 148 71-221 1-192 (192)
6 1ffk_I Ribosomal protein L15E; 100.0 1.5E-69 5.3E-74 465.0 8.9 149 69-222 1-192 (194)
7 1ffk_I Ribosomal protein L15E; 100.0 2.5E-40 8.5E-45 284.2 4.9 109 1-146 2-111 (194)
8 4a17_L RPL15, ribosomal protei 100.0 1.2E-39 4.1E-44 281.8 2.1 109 1-146 1-112 (204)
9 3jyw_L 60S ribosomal protein L 100.0 7.3E-39 2.5E-43 274.9 1.1 108 2-146 1-111 (192)
10 1vq8_M 50S ribosomal protein L 100.0 1.7E-33 5.8E-38 241.9 4.8 127 69-201 1-163 (194)
11 3j21_M 50S ribosomal protein L 100.0 1.7E-32 5.9E-37 235.7 7.3 126 70-201 1-162 (194)
12 3iz5_P 60S ribosomal protein L 100.0 2.6E-32 8.7E-37 236.0 7.2 126 70-201 1-164 (204)
No 1
>3iz5_P 60S ribosomal protein L15 (L15E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_P 2zkr_m
Probab=100.00 E-value=5.2e-79 Score=526.88 Aligned_cols=185 Identities=48% Similarity=0.836 Sum_probs=156.3
Q ss_pred CchHHHHHHHHhccCchHHHHHHHHHHHHHhcCCceeecCCCCChhhhhhhccccccceEEeecCCCccchHHHHHHHHH
Q psy7821 1 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGKLPRSNTSSIMGAYRFISELY 80 (231)
Q Consensus 1 mgaYkYi~elwkkkqsd~~~~l~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~vv~R~~~s~~MgaYKYV~elw 80 (231)
||||+||+|+|++||||+|+||+++|||||||+|+||||++||||||||+|||||||||||+|++|
T Consensus 1 mg~Y~yi~e~wkk~~sd~~~~l~r~R~~e~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~Vv~RvrV-------------- 66 (204)
T 3iz5_P 1 MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVVYRVRV-------------- 66 (204)
T ss_dssp CCTHHHHHHHHHCTTSHHHHHHHHHHHHHHHHSCSEEEESSCSCHHHHTTTCCCCSTTEEEEEEEE--------------
T ss_pred CcHHHHHHHHHhccccHHHHHHHHHHHHHHhcCCceEEcCCCCChHHHHhcCCccCCeeEEEEEEE--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchhHHHHHhhhhhhhccCCceeeeCCCCCC--chhhhccc-cccccceeEEEEEEEeecCCCCCCCCCcchhhhhh
Q psy7821 81 RKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRP--DKARRMGY-RAKQVTLFSVQRYDVEEGNVQYPRVPTMNVSAEDV 157 (231)
Q Consensus 81 rkkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr~--drArrLGy-KaKqG~~~vi~Rv~vrRggrK~p~kp~~q~iaeer 157 (231)
+ .++ .+.++|..+ .|++++|+ ++|.. .+++.|+|||+|+++|| |. -
T Consensus 67 R-------------------rGg--rkrp~pkg~~~~kPk~~Gvn~lk~~--rslq~iAEERagrk~~n---Lr-----V 115 (204)
T 3iz5_P 67 R-------------------RGG--RKRPVPKGIVYGKPKHQGITQLKFQ--RNKRSVAEERAGRKLGG---LR-----V 115 (204)
T ss_dssp E-------------------SSC--CCCSCTTSCCCSCGGGCCSSSSCCS--SCHHHHHHHHHHHHSTT---EE-----E
T ss_pred e-------------------eCC--CCCCccCCCcccCcccccccccCcc--ccHHHHHHHHHhccCCC---cE-----E
Confidence 3 356 788999999 99999998 78888 33333333333333322 10 1
Q ss_pred ccc---------hhhhhh------hhhhcCCCCcccccCCcccccccCCccccccccCC-CCCCCcccccCCCccceeec
Q psy7821 158 VTS---------VFLKLL------LAIRRDPKVNWICKPVHKHREMRGLTSISKKSRGL-GKGHGFAQTIGGSRHAAWVR 221 (231)
Q Consensus 158 lnS---------k~~EvI------~~Ir~d~~~~wi~~~~hk~r~~rglTsag~k~rgl-~kg~~~~~~~g~s~~a~w~r 221 (231)
||| |||||| |||++||+|||||+|+|||||||||||||+|+||| +|||+++||+ ||.+|+|++
T Consensus 116 LNSYwV~eDg~yK~fEVILVDp~H~aIr~Dp~~nWI~~~~hk~Re~RGLTSAGkk~RGLr~kG~~~~k~r-~s~ra~w~r 194 (204)
T 3iz5_P 116 LNSYWVNEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHTHHKAR-PSRRATWKR 194 (204)
T ss_dssp EEEEEEEECSSEEEEEEEEEESSSHHHHTCTTTGGGTSGGGTTTTTTTCSHHHHHTTTTTCCSTTGGGTS-SCTTTTTTC
T ss_pred eeeeeecCCCCcceEEEEEecCCchhhccCCccccccCchhccccccCCccccccccccCCCCCCcccCC-cchhhhhhc
Confidence 999 999999 99999999999999999999999999999999999 9999999999 999999999
Q ss_pred cceeeeeecC
Q psy7821 222 RNTLELRRKR 231 (231)
Q Consensus 222 ~n~~~l~r~r 231 (231)
+|||+|+|||
T Consensus 195 ~ntl~l~r~r 204 (204)
T 3iz5_P 195 NQTVSLRRYR 204 (204)
T ss_dssp ----------
T ss_pred cceeeeEecC
Confidence 9999999997
No 2
>4a17_L RPL15, ribosomal protein L15; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_L 4a1c_L 4a1e_L
Probab=100.00 E-value=6.4e-77 Score=514.16 Aligned_cols=159 Identities=48% Similarity=0.901 Sum_probs=156.1
Q ss_pred chHHHHHHHHHhhhcchhHHHHHhhhhhhhccCCceeeeCCCCCCchhhhccccccccceeEEEEEEEeecCCCCCC---
Q psy7821 70 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTLFSVQRYDVEEGNVQYPR--- 146 (231)
Q Consensus 70 MgaYKYV~elwrkkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr~drArrLGyKaKqG~~~vi~Rv~vrRggrK~p~--- 146 (231)
||||+||+|+|++||||+|+||+++|||||||+++|+|+++||+||||++|||||||| |||+||+|++||+|+|+
T Consensus 1 mg~Y~yi~e~wkk~~sd~~~~l~r~R~~e~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG--~Vv~RvrVRrGgrkrp~pkg 78 (204)
T 4a17_L 1 MGAYKYLEELWRKKQSDLMSFILRLRTWEYRQLPVIHKASRSSRPDKARKLGYKNKDG--YAIWRVRVRRGGRKRPVSKG 78 (204)
T ss_dssp -CHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHSCSEEEESSCSCHHHHHHTTCCSSTT--EEEEEEEEECSCCCCCCGGG
T ss_pred CcHHHHHHHHHhccccHHHHHHHHHHHHHHhcCCceEEcCCCCChHHHHhcCCccCCe--eEEEEEEEeeCCCCCCccCC
Confidence 9999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred ----CC------------Ccchhhhhh----------ccc---------hhhhhh------hhhhcCCCCcccccCCccc
Q psy7821 147 ----VP------------TMNVSAEDV----------VTS---------VFLKLL------LAIRRDPKVNWICKPVHKH 185 (231)
Q Consensus 147 ----kp------------~~q~iaeer----------lnS---------k~~EvI------~~Ir~d~~~~wi~~~~hk~ 185 (231)
|| |||+||||| ||| |||||| |||++||+|||||+|+|||
T Consensus 79 ~~~~kPk~~Gvn~lk~~kslq~iAEERagrk~~nLrVLNSYwV~eDg~yK~fEVILVDp~H~aIr~Dp~~nWI~~~~hk~ 158 (204)
T 4a17_L 79 IVYGKPSSVGINQLKFARNLRSCAEERVGKRVPELRVLNSYWVGQDGTYKFYEVILADPSHNAIRNDPRINWICESAHKH 158 (204)
T ss_dssp CCCSCTTTCCCTTCCCSSCHHHHHHHHHHHHSCSSEEEEEEEEECCSSEEEEEEEEECTTSHHHHHCTTTGGGGSGGGTT
T ss_pred CcccCcccccccccCcchhHHHHHHHHHhccCCCcEEeeeeeecCCCCcceEEEEEecCCchhhccCCccccccCchhcc
Confidence 66 899999999 999 999999 9999999999999999999
Q ss_pred ccccCCccccccccCC-CCCCCcccccCCCccceeeccceeeeeecC
Q psy7821 186 REMRGLTSISKKSRGL-GKGHGFAQTIGGSRHAAWVRRNTLELRRKR 231 (231)
Q Consensus 186 r~~rglTsag~k~rgl-~kg~~~~~~~g~s~~a~w~r~n~~~l~r~r 231 (231)
||||||||||+|+||| +|||+++||+ ||.+|+|+++|||+|+|||
T Consensus 159 Re~RGLTsAGkk~RGLr~kG~~~~k~r-~s~ra~w~r~ntl~l~r~r 204 (204)
T 4a17_L 159 RELRGLTSAGRKGRGLRVKGHRAKSLR-TSRKGNWRARQMLKLRRYR 204 (204)
T ss_dssp TTTTTCSHHHHHHTTTTCCSTTTGGGT-TTHHHHHHHHHCCCCCSCC
T ss_pred ccccCcccccccccccCCCCCCcccCC-cchhhhhhccceeeeEecC
Confidence 9999999999999999 9999999999 9999999999999999997
No 3
>1vq8_M 50S ribosomal protein L15E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.2 PDB: 1vq4_M* 1vq5_M* 1vq6_M* 1vq7_M* 1s72_M* 1vqn_M* 2otj_M* 2otl_M* 2qex_M* 2qa4_M* 1vqo_M* 1vq9_M* 1vql_M* 1vqm_M* 1vqk_M* 1vqp_M* 1yij_M* 1yi2_M* 1yit_M* 1yj9_M* ...
Probab=100.00 E-value=1.3e-73 Score=490.19 Aligned_cols=175 Identities=30% Similarity=0.507 Sum_probs=156.5
Q ss_pred CchHHHHHHHHhccCchHHHHHHHHHHHHHhcCCceeecCCCCChhhhhhhccccccceEEeecCCCccchHHHHHHHHH
Q psy7821 1 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGKLPRSNTSSIMGAYRFISELY 80 (231)
Q Consensus 1 mgaYkYi~elwkkkqsd~~~~l~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~vv~R~~~s~~MgaYKYV~elw 80 (231)
||||+||+|+|++||||+|+||+++|||||||+|+||||++||||||||+|||||||||||+|++|
T Consensus 2 mgaY~Yi~e~wkkkqsd~~r~llr~R~~e~Rq~~~i~R~~rPTR~DkAR~LGYKAKQG~vv~RvrV-------------- 67 (194)
T 1vq8_M 2 RSAYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSV-------------- 67 (194)
T ss_dssp CCSHHHHHHHTTSTTSHHHHHHHHHHHHHHTTSCSEEEESSCSSHHHHHHHTCCSSTTEEEEEEEE--------------
T ss_pred ccHHHHHHHHHhCcchHHHHHHHHHHHHHHhCCCceEEcCCCCChhHHHhcCCccCCeEEEEEEEe--------------
Confidence 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchhHHHHHhhhhhhhccCCceeeeCCCCCCchhhhccc-cccccceeEEEEEEEeecCCCCCCCCCcchhhhhhcc
Q psy7821 81 RKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGY-RAKQVTLFSVQRYDVEEGNVQYPRVPTMNVSAEDVVT 159 (231)
Q Consensus 81 rkkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr~drArrLGy-KaKqG~~~vi~Rv~vrRggrK~p~kp~~q~iaeerln 159 (231)
+ .++ .+.++|..+.|++++|+ ++|.. .+++.|+|||+|+++|| |. -||
T Consensus 68 R-------------------rGg--rkrp~pkg~~kPk~~Gv~~lk~~--rslq~iAEERagrk~~n---Lr-----VLN 116 (194)
T 1vq8_M 68 R-------------------KGS--ARKRRHKAGRRSKRQGVTRITRR--KDIQRVAEERASRTFPN---LR-----VLN 116 (194)
T ss_dssp E-------------------CSS--CCCCCCSSCCCGGGTCCSSCCCS--SCHHHHHHHHHHHHSTT---CE-----EEE
T ss_pred c-------------------cCC--CCCCCcCCCCCccccCccccCcc--ccHHHHHHHHHhccCCC---ce-----eee
Confidence 3 366 78899999999999998 78888 44444444444444422 10 199
Q ss_pred c---------hhhhhh------hhhhcCCCCcccccCCcccccccCCccccccccCC-CCCCCcccccCCCccceeec
Q psy7821 160 S---------VFLKLL------LAIRRDPKVNWICKPVHKHREMRGLTSISKKSRGL-GKGHGFAQTIGGSRHAAWVR 221 (231)
Q Consensus 160 S---------k~~EvI------~~Ir~d~~~~wi~~~~hk~r~~rglTsag~k~rgl-~kg~~~~~~~g~s~~a~w~r 221 (231)
| |||||| |||++||+|||||+|+|||||||||||||+|+||| +|||+++||+ ||.+|+|++
T Consensus 117 SYWV~eD~~yK~yEVILVDp~H~aIr~Dp~~nWI~~~~hk~Re~RGLTsaGkk~RGL~~kG~~~~k~~-~~~ra~w~~ 193 (194)
T 1vq8_M 117 SYSVGQDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSEKTR-PSLRSNGGK 193 (194)
T ss_dssp EEEEEEETTEEEEEEEEECTTCHHHHTCTTTGGGGSGGGTTGGGGTCSHHHHHHTTCSCSSTTCTTTS-SCTTTTTSC
T ss_pred eEEeccCCceeEEEEEEEcCCcHhhhcCcccccccCcccccchhccccccccccCccCCCCCCcccCC-cccchhhcc
Confidence 9 999999 99999999999999999999999999999999999 8999999998 669999986
No 4
>3j21_M 50S ribosomal protein L15E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.8e-72 Score=483.41 Aligned_cols=175 Identities=33% Similarity=0.534 Sum_probs=157.5
Q ss_pred CchHHHHHHHHhccCchHHHHHHHHHHHHHhcCCceeecCCCCChhhhhhhccccccceEEeecCCCccchHHHHHHHHH
Q psy7821 1 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGKLPRSNTSSIMGAYRFISELY 80 (231)
Q Consensus 1 mgaYkYi~elwkkkqsd~~~~l~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~vv~R~~~s~~MgaYKYV~elw 80 (231)
||||+||+|+|++||||+|+||+++|||||||+|+|||||+||||||||+|||||||||||+|++|
T Consensus 1 Mg~Y~yi~e~wkkk~s~~~~~l~r~R~~e~Rq~~ai~R~~rPTR~dkAR~LGYKAKQG~Vv~RvrV-------------- 66 (194)
T 3j21_M 1 MGMYKYIREAWKSPKKSYVGELLKQRMIKWRREPVVVRIERPTRLDRARALGYQAKQGYVIVRVRV-------------- 66 (194)
T ss_dssp CCHHHHHHHHHHSTTSTTHHHHHHHHHHHHHHSCSEEEESSCSSHHHHHHHHCCCSTTEEEEEEEE--------------
T ss_pred CcHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCceeecCCCCChhHHHhcCccccCceEEEEEEE--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchhHHHHHhhhhhhhccCCceeeeCCCCCCchhhhccc-cccccceeEEEEEEEeecCCCCCCCCCcchhhhhhcc
Q psy7821 81 RKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGY-RAKQVTLFSVQRYDVEEGNVQYPRVPTMNVSAEDVVT 159 (231)
Q Consensus 81 rkkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr~drArrLGy-KaKqG~~~vi~Rv~vrRggrK~p~kp~~q~iaeerln 159 (231)
+ .++ .+.++|....|++++|+ ++|.. .+++.|+|||+|+++|| |. -||
T Consensus 67 r-------------------rGg--rkr~~pkg~~kPk~~Gv~~lk~~--kslq~iAEERagrk~~n---Lr-----VLN 115 (194)
T 3j21_M 67 R-------------------KGG--RKRPRWKGGRKPSKMGQVKYSPK--KSLQWIAEEKAARKFPN---LE-----VLN 115 (194)
T ss_dssp E-------------------SSC--CCCCCCSSCCCTTTTCCSSCCCS--SCHHHHHHHHHHHHSTT---SE-----EEE
T ss_pred e-------------------eCC--CCCCCcCCCCCcccccccccCcc--ccHHHHHHHHHhccCCC---ce-----eee
Confidence 3 356 78999999999999998 78888 44444444444444432 11 199
Q ss_pred c---------hhhhhh------hhhhcCCCCcccccCCcccccccCCccccccccCC-CCCCCcccccCCCccceeec
Q psy7821 160 S---------VFLKLL------LAIRRDPKVNWICKPVHKHREMRGLTSISKKSRGL-GKGHGFAQTIGGSRHAAWVR 221 (231)
Q Consensus 160 S---------k~~EvI------~~Ir~d~~~~wi~~~~hk~r~~rglTsag~k~rgl-~kg~~~~~~~g~s~~a~w~r 221 (231)
| |||||| |||++||+|||||+|+|||||||||||||+|+||| +|||+++|+. +|.+|+|++
T Consensus 116 SYwV~eDg~yK~fEVILVDp~H~aIr~Dp~~nWI~~~~hk~Re~RGLTsAGkk~RGL~~kG~~~~k~r-ps~ra~~~~ 192 (194)
T 3j21_M 116 SYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIALKHHKGRVFRGLTSAGKKGRGLRNKGKGAEKVR-PSIRANEGK 192 (194)
T ss_dssp EEEEEECSSEEEEEEEEECSSCHHHHHSTTTGGGGSGGGTTHHHHCCSHHHHHHHTTTCSSTTCSSSS-SCSTTSSSC
T ss_pred ceeecCCCCceeEEEEEEcCCChhhccCCccccccccccccccccCccccccccccccccCCcccccC-ccccccccc
Confidence 9 999999 99999999999999999999999999999999999 9999999998 999999986
No 5
>3jyw_L 60S ribosomal protein L15(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_P 3izs_P 3o58_O 3o5h_O 3u5e_N 3u5i_N 4b6a_N 1s1i_L
Probab=100.00 E-value=8.9e-72 Score=478.54 Aligned_cols=148 Identities=55% Similarity=1.005 Sum_probs=145.5
Q ss_pred hHHHHHHHHHhhhcchhHHHHHhhhhhhhccCCceeeeCCCCCCchhhhccccccccceeEEEEEEEeecCCCCCC----
Q psy7821 71 GAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTLFSVQRYDVEEGNVQYPR---- 146 (231)
Q Consensus 71 gaYKYV~elwrkkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr~drArrLGyKaKqG~~~vi~Rv~vrRggrK~p~---- 146 (231)
|||+||+|+|++||||+|+||+++|||||||+++|+|+++|||||||++|||||||| |||+||+|+|||+|+|+
T Consensus 1 g~Y~yi~e~wkk~~sd~~~~l~r~R~~e~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG--~Vv~RvrVRrGgrkrp~pkg~ 78 (192)
T 3jyw_L 1 GAYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQG--FVIYRVRVRRGNRKRPVPKGA 78 (192)
T ss_dssp CCCTTTHHHHHCTTSTTHHHHHHHHHHHHHHCCSEEEESSCSSHHHHHHHHCCCSTT--CEEEEEECCCSSSBCCCCCSC
T ss_pred CHHHHHHHHHhccchHHHHHHHHHHHHHHhcCCceEEcCCCCChHHHHhcCCccCCe--eEEEEEEEeECCCCCCccCCC
Confidence 789999999999999999999999999999999999999999999999999999999 99999999999999998
Q ss_pred ---CC------------Ccchhhhhh----------ccc---------hhhhhh------hhhhcCCCCcccccCCcccc
Q psy7821 147 ---VP------------TMNVSAEDV----------VTS---------VFLKLL------LAIRRDPKVNWICKPVHKHR 186 (231)
Q Consensus 147 ---kp------------~~q~iaeer----------lnS---------k~~EvI------~~Ir~d~~~~wi~~~~hk~r 186 (231)
|| |||+||||| ||| |||||| |||++||+|||||+|+||||
T Consensus 79 ~~gkPk~~Gvn~lk~~kslq~iAEERagrk~~nLrVLNSYwV~eDg~yK~fEVILVDp~H~aIr~Dp~~nWI~~~~hk~R 158 (192)
T 3jyw_L 79 TYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWVNQDSTYKYFEVILVDPQHKAIRRDARYNWICDPVHKHR 158 (192)
T ss_dssp SCSSCSSCCSBCCCCSSCHHHHHHHHHHTTSSSSEEEEEEEEEECSSCEEEEEEEECSSCSSTTTSSTTTGGGSGGGSST
T ss_pred cccCcccccccccCccccHHHHHHHHHhccCCCcEEeeeeeecCCCCcceEEEEEecCCchhhccCCccccccCchhccc
Confidence 66 899999999 999 999999 99999999999999999999
Q ss_pred cccCCccccccccCCCCCCCcccccCCCccceeec
Q psy7821 187 EMRGLTSISKKSRGLGKGHGFAQTIGGSRHAAWVR 221 (231)
Q Consensus 187 ~~rglTsag~k~rgl~kg~~~~~~~g~s~~a~w~r 221 (231)
|||||||||+|+|||+|||+++||+ ||.+|+|++
T Consensus 159 e~RGLTsAGkk~RGL~kG~~~~k~~-~s~ra~w~r 192 (192)
T 3jyw_L 159 EARGLTATGKKSRGINKGHKFNNTK-AGRRKTWKR 192 (192)
T ss_dssp TTTTCSTTGGGGTCCCCSSTTSSSS-SCHHHHTCC
T ss_pred cccCCccccccccccCCCcCcccCC-CcccccccC
Confidence 9999999999999999999999999 999999986
No 6
>1ffk_I Ribosomal protein L15E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.12.1.2
Probab=100.00 E-value=1.5e-69 Score=465.01 Aligned_cols=149 Identities=30% Similarity=0.553 Sum_probs=145.0
Q ss_pred cchHHHHHHHHHhhhcchhHHHHHhhhhhhhccCCceeeeCCCCCCchhhhccccccccceeEEEEEEEeecCCCCCC--
Q psy7821 69 IMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTLFSVQRYDVEEGNVQYPR-- 146 (231)
Q Consensus 69 ~MgaYKYV~elwrkkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr~drArrLGyKaKqG~~~vi~Rv~vrRggrK~p~-- 146 (231)
.||||+||+|||++||||+|+||+++|||||||+++|+|++||||||||++|||||||| |||+||+|+|||+|+|+
T Consensus 1 ~mgaY~Yi~e~wkkkqsd~~r~llr~R~~e~Rq~~~i~R~~rPTR~DkAR~LGYKAKQG--~vv~RvrVRrGgrkrp~pk 78 (194)
T 1ffk_I 1 MKSMYAYIREAWKRPYEGYVGELMWHRLQKWRREPAVVRIPRPTRLDRARALGYKAKKG--IIVVRVRIRRGGRRATRPN 78 (194)
T ss_pred CccHHHHHHHHHhCcchHHHHHHHHHHHHHHhCCCceEEcCCCCchhHHHhcCCccCCe--EEEEEEEeccCCCCCCCcC
Confidence 39999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred ---CC------------Ccchhhhhh----------ccc---------hhhhhh------hhhhcCCCCcccccCCcccc
Q psy7821 147 ---VP------------TMNVSAEDV----------VTS---------VFLKLL------LAIRRDPKVNWICKPVHKHR 186 (231)
Q Consensus 147 ---kp------------~~q~iaeer----------lnS---------k~~EvI------~~Ir~d~~~~wi~~~~hk~r 186 (231)
|| |||+||||| ||| |||||| |||++||+|||||+ ||||
T Consensus 79 g~~kPk~~Gvn~lk~~rslq~iAEERagrk~~nLrVLNSYWV~qD~~yK~yEVILVDp~H~aIr~Dp~~nWI~~--hk~R 156 (194)
T 1ffk_I 79 KGRKSKKMMVNRRPRKKNLQWIAEERANRKYPNMEVLNSYWVGEDGRYKWFEVILVDRDHPAIKSDPQLSWVSR--TRGR 156 (194)
T ss_pred CCCCccccCccccCccccHHHHHHHHHhccCCCceeeeeEEeccCCceeEEEEEEEcCCcHhhhcCcccccccc--cccc
Confidence 66 899999999 999 999999 99999999999999 9999
Q ss_pred cccCCccccccccCC-CCCCCcccccCCCccceeecc
Q psy7821 187 EMRGLTSISKKSRGL-GKGHGFAQTIGGSRHAAWVRR 222 (231)
Q Consensus 187 ~~rglTsag~k~rgl-~kg~~~~~~~g~s~~a~w~r~ 222 (231)
|||||||||+|+||| +|||+++||+ ||.+|+|++.
T Consensus 157 e~RGLTsaGkk~RGL~~kG~~~~k~~-~~~ra~w~r~ 192 (194)
T 1ffk_I 157 VYRGLTSAGRKARGLRRKGRGAEKVR-PSLRANFRKK 192 (194)
T ss_pred hhccccccccccCccCCCCCCcccCC-cchhhhhhhc
Confidence 999999999999999 9999999998 6699999974
No 7
>1ffk_I Ribosomal protein L15E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.12.1.2
Probab=100.00 E-value=2.5e-40 Score=284.19 Aligned_cols=109 Identities=30% Similarity=0.497 Sum_probs=105.4
Q ss_pred CchHHHHHHHHhccCchHHHHHHHHHHHHHhcCCceeecCCCCChhhhhhhccccccceEEeecCCCccchHHHHHHHHH
Q psy7821 1 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGKLPRSNTSSIMGAYRFISELY 80 (231)
Q Consensus 1 mgaYkYi~elwkkkqsd~~~~l~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~vv~R~~~s~~MgaYKYV~elw 80 (231)
||||+||+|+|++||||+|+||+++|||||||+|+||||++||||||||+|||||||||||+|++|
T Consensus 2 mgaY~Yi~e~wkkkqsd~~r~llr~R~~e~Rq~~~i~R~~rPTR~DkAR~LGYKAKQG~vv~RvrV-------------- 67 (194)
T 1ffk_I 2 KSMYAYIREAWKRPYEGYVGELMWHRLQKWRREPAVVRIPRPTRLDRARALGYKAKKGIIVVRVRI-------------- 67 (194)
T ss_pred ccHHHHHHHHHhCcchHHHHHHHHHHHHHHhCCCceEEcCCCCchhHHHhcCCccCCeEEEEEEEe--------------
Confidence 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchhHHHHHhhhhhhhccCCceeeeCCCCCCchhhhccc-cccccceeEEEEEEEeecCCCCCC
Q psy7821 81 RKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGY-RAKQVTLFSVQRYDVEEGNVQYPR 146 (231)
Q Consensus 81 rkkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr~drArrLGy-KaKqG~~~vi~Rv~vrRggrK~p~ 146 (231)
++ ++ .+.++|..+.|++++|+ ++|.. .+++.|+|||+|+++||
T Consensus 68 Rr-------------------Gg--rkrp~pkg~~kPk~~Gvn~lk~~--rslq~iAEERagrk~~n 111 (194)
T 1ffk_I 68 RR-------------------GG--RRATRPNKGRKSKKMMVNRRPRK--KNLQWIAEERANRKYPN 111 (194)
T ss_pred cc-------------------CC--CCCCCcCCCCCccccCccccCcc--ccHHHHHHHHHhccCCC
Confidence 33 56 78899999999999998 89999 99999999999999999
No 8
>4a17_L RPL15, ribosomal protein L15; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_L 4a1c_L 4a1e_L
Probab=100.00 E-value=1.2e-39 Score=281.83 Aligned_cols=109 Identities=39% Similarity=0.694 Sum_probs=104.1
Q ss_pred CchHHHHHHHHhccCchHHHHHHHHHHHHHhcCCceeecCCCCChhhhhhhccccccceEEeecCCCccchHHHHHHHHH
Q psy7821 1 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGKLPRSNTSSIMGAYRFISELY 80 (231)
Q Consensus 1 mgaYkYi~elwkkkqsd~~~~l~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~vv~R~~~s~~MgaYKYV~elw 80 (231)
||||+||+|+|++||||+|+||+++|||||||+|+||||++||||||||+|||||||||||+|++|
T Consensus 1 mg~Y~yi~e~wkk~~sd~~~~l~r~R~~e~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~Vv~RvrV-------------- 66 (204)
T 4a17_L 1 MGAYKYLEELWRKKQSDLMSFILRLRTWEYRQLPVIHKASRSSRPDKARKLGYKNKDGYAIWRVRV-------------- 66 (204)
T ss_dssp -CHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHSCSEEEESSCSCHHHHHHTTCCSSTTEEEEEEEE--------------
T ss_pred CcHHHHHHHHHhccccHHHHHHHHHHHHHHhcCCceEEcCCCCChHHHHhcCCccCCeeEEEEEEE--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchhHHHHHhhhhhhhccCCceeeeCCCCCC--chhhhccc-cccccceeEEEEEEEeecCCCCCC
Q psy7821 81 RKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRP--DKARRMGY-RAKQVTLFSVQRYDVEEGNVQYPR 146 (231)
Q Consensus 81 rkkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr~--drArrLGy-KaKqG~~~vi~Rv~vrRggrK~p~ 146 (231)
+ .++ .+.++|..+ .|++++|+ ++|.. .+++.|+|||+|+++||
T Consensus 67 R-------------------rGg--rkrp~pkg~~~~kPk~~Gvn~lk~~--kslq~iAEERagrk~~n 112 (204)
T 4a17_L 67 R-------------------RGG--RKRPVSKGIVYGKPSSVGINQLKFA--RNLRSCAEERVGKRVPE 112 (204)
T ss_dssp E-------------------CSC--CCCCCGGGCCCSCTTTCCCTTCCCS--SCHHHHHHHHHHHHSCS
T ss_pred e-------------------eCC--CCCCccCCCcccCcccccccccCcc--hhHHHHHHHHHhccCCC
Confidence 3 356 788999998 99999999 89999 99999999999999999
No 9
>3jyw_L 60S ribosomal protein L15(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_P 3izs_P 3o58_O 3o5h_O 3u5e_N 3u5i_N 4b6a_N 1s1i_L
Probab=100.00 E-value=7.3e-39 Score=274.88 Aligned_cols=108 Identities=44% Similarity=0.728 Sum_probs=103.5
Q ss_pred chHHHHHHHHhccCchHHHHHHHHHHHHHhcCCceeecCCCCChhhhhhhccccccceEEeecCCCccchHHHHHHHHHh
Q psy7821 2 GAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGKLPRSNTSSIMGAYRFISELYR 81 (231)
Q Consensus 2 gaYkYi~elwkkkqsd~~~~l~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~vv~R~~~s~~MgaYKYV~elwr 81 (231)
|||+||+|+|++||||+|+||+++|||||||+|+||||++||||||||+|||||||||||+|++| +
T Consensus 1 g~Y~yi~e~wkk~~sd~~~~l~r~R~~e~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~Vv~RvrV--------------R 66 (192)
T 3jyw_L 1 GAYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVIYRVRV--------------R 66 (192)
T ss_dssp CCCTTTHHHHHCTTSTTHHHHHHHHHHHHHHCCSEEEESSCSSHHHHHHHHCCCSTTCEEEEEEC--------------C
T ss_pred CHHHHHHHHHhccchHHHHHHHHHHHHHHhcCCceEEcCCCCChHHHHhcCCccCCeeEEEEEEE--------------e
Confidence 79999999999999999999999999999999999999999999999999999999999999999 3
Q ss_pred hhcchhHHHHHhhhhhhhccCCceeeeCCCCCCc--hhhhccc-cccccceeEEEEEEEeecCCCCCC
Q psy7821 82 KKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPD--KARRMGY-RAKQVTLFSVQRYDVEEGNVQYPR 146 (231)
Q Consensus 82 kkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr~d--rArrLGy-KaKqG~~~vi~Rv~vrRggrK~p~ 146 (231)
.++ .+.++|..+. |++++|+ ++|.. .+++.|+|||+|+++||
T Consensus 67 -------------------rGg--rkrp~pkg~~~gkPk~~Gvn~lk~~--kslq~iAEERagrk~~n 111 (192)
T 3jyw_L 67 -------------------RGN--RKRPVPKGATYGKPTNQGVNELKYQ--RSLRATAEERVGRRAAN 111 (192)
T ss_dssp -------------------CSS--SBCCCCCSCSCSSCSSCCSBCCCCS--SCHHHHHHHHHHTTSSS
T ss_pred -------------------ECC--CCCCccCCCcccCcccccccccCcc--ccHHHHHHHHHhccCCC
Confidence 356 7889999985 9999999 89999 99999999999999999
No 10
>1vq8_M 50S ribosomal protein L15E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.2 PDB: 1vq4_M* 1vq5_M* 1vq6_M* 1vq7_M* 1s72_M* 1vqn_M* 2otj_M* 2otl_M* 2qex_M* 2qa4_M* 1vqo_M* 1vq9_M* 1vql_M* 1vqm_M* 1vqk_M* 1vqp_M* 1yij_M* 1yi2_M* 1yit_M* 1yj9_M* ...
Probab=99.97 E-value=1.7e-33 Score=241.88 Aligned_cols=127 Identities=28% Similarity=0.371 Sum_probs=112.2
Q ss_pred cchHHHHHHHHHhhhcchhHHHHHhhhhhhhccCCceeeeCCCCCCchhhhccccccccceeEEEEEEEeecCCCCCC--
Q psy7821 69 IMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTLFSVQRYDVEEGNVQYPR-- 146 (231)
Q Consensus 69 ~MgaYKYV~elwrkkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr~drArrLGyKaKqG~~~vi~Rv~vrRggrK~p~-- 146 (231)
.||||+||+|||++||||+|+||+++|||||||+++|+|++||||||||++|||||||| |||+||+|+|||+|+|+
T Consensus 1 ~mgaY~Yi~e~wkkkqsd~~r~llr~R~~e~Rq~~~i~R~~rPTR~DkAR~LGYKAKQG--~vv~RvrVRrGgrkrp~pk 78 (194)
T 1vq8_M 1 ARSAYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQG--VIVARVSVRKGSARKRRHK 78 (194)
T ss_dssp CCCSHHHHHHHTTSTTSHHHHHHHHHHHHHHTTSCSEEEESSCSSHHHHHHHTCCSSTT--EEEEEEEEECSSCCCCCCS
T ss_pred CccHHHHHHHHHhCcchHHHHHHHHHHHHHHhCCCceEEcCCCCChhHHHhcCCccCCe--EEEEEEEeccCCCCCCCcC
Confidence 39999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred ---CC------------Ccchhhhhhccc--hhhhhh--------------hhhhcCCCCcccccCCcccccccCCccc-
Q psy7821 147 ---VP------------TMNVSAEDVVTS--VFLKLL--------------LAIRRDPKVNWICKPVHKHREMRGLTSI- 194 (231)
Q Consensus 147 ---kp------------~~q~iaeerlnS--k~~EvI--------------~~Ir~d~~~~wi~~~~hk~r~~rglTsa- 194 (231)
|| |||+|||||... .-.||+ ..|--||.-+=|.++- ..-.++.+
T Consensus 79 g~~kPk~~Gv~~lk~~rslq~iAEERagrk~~nLrVLNSYWV~eD~~yK~yEVILVDp~H~aIr~Dp----~~nWI~~~~ 154 (194)
T 1vq8_M 79 AGRRSKRQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPNHPAIQNDD----DLSWICADD 154 (194)
T ss_dssp SCCCGGGTCCSSCCCSSCHHHHHHHHHHHHSTTCEEEEEEEEEEETTEEEEEEEEECTTCHHHHTCT----TTGGGGSGG
T ss_pred CCCCccccCccccCccccHHHHHHHHHhccCCCceeeeeEEeccCCceeEEEEEEEcCCcHhhhcCc----ccccccCcc
Confidence 66 899999999776 456787 7788888888877643 45555554
Q ss_pred --cccccCC
Q psy7821 195 --SKKSRGL 201 (231)
Q Consensus 195 --g~k~rgl 201 (231)
++-.|||
T Consensus 155 hk~Re~RGL 163 (194)
T 1vq8_M 155 QADRVFRGL 163 (194)
T ss_dssp GTTGGGGTC
T ss_pred cccchhccc
Confidence 5556787
No 11
>3j21_M 50S ribosomal protein L15E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.97 E-value=1.7e-32 Score=235.73 Aligned_cols=126 Identities=29% Similarity=0.471 Sum_probs=109.9
Q ss_pred chHHHHHHHHHhhhcchhHHHHHhhhhhhhccCCceeeeCCCCCCchhhhccccccccceeEEEEEEEeecCCCCCC---
Q psy7821 70 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTLFSVQRYDVEEGNVQYPR--- 146 (231)
Q Consensus 70 MgaYKYV~elwrkkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr~drArrLGyKaKqG~~~vi~Rv~vrRggrK~p~--- 146 (231)
||||+||+|+|+++|||+|+||+++|||||||+++|+|+++|||||||++|||||||| |||+||+|++||+|+|+
T Consensus 1 Mg~Y~yi~e~wkkk~s~~~~~l~r~R~~e~Rq~~ai~R~~rPTR~dkAR~LGYKAKQG--~Vv~RvrVrrGgrkr~~pkg 78 (194)
T 3j21_M 1 MGMYKYIREAWKSPKKSYVGELLKQRMIKWRREPVVVRIERPTRLDRARALGYQAKQG--YVIVRVRVRKGGRKRPRWKG 78 (194)
T ss_dssp CCHHHHHHHHHHSTTSTTHHHHHHHHHHHHHHSCSEEEESSCSSHHHHHHHHCCCSTT--EEEEEEEEESSCCCCCCCSS
T ss_pred CcHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCceeecCCCCChhHHHhcCccccCc--eEEEEEEEeeCCCCCCCcCC
Confidence 9999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred --CC------------Ccchhhhhhccch--hhhhh--------------hhhhcCCCCcccccCCcccccccCCccc--
Q psy7821 147 --VP------------TMNVSAEDVVTSV--FLKLL--------------LAIRRDPKVNWICKPVHKHREMRGLTSI-- 194 (231)
Q Consensus 147 --kp------------~~q~iaeerlnSk--~~EvI--------------~~Ir~d~~~~wi~~~~hk~r~~rglTsa-- 194 (231)
|| |||+|||||.+-+ -.||+ ..|-=||.-+=|.++- ..--+|.+
T Consensus 79 ~~kPk~~Gv~~lk~~kslq~iAEERagrk~~nLrVLNSYwV~eDg~yK~fEVILVDp~H~aIr~Dp----~~nWI~~~~h 154 (194)
T 3j21_M 79 GRKPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDP----KIAWIALKHH 154 (194)
T ss_dssp CCCTTTTCCSSCCCSSCHHHHHHHHHHHHSTTSEEEEEEEEEECSSEEEEEEEEECSSCHHHHHST----TTGGGGSGGG
T ss_pred CCCcccccccccCccccHHHHHHHHHhccCCCceeeeceeecCCCCceeEEEEEEcCCChhhccCC----cccccccccc
Confidence 66 8999999997774 47888 6677777666666533 44455544
Q ss_pred -cccccCC
Q psy7821 195 -SKKSRGL 201 (231)
Q Consensus 195 -g~k~rgl 201 (231)
++-.|||
T Consensus 155 k~Re~RGL 162 (194)
T 3j21_M 155 KGRVFRGL 162 (194)
T ss_dssp TTHHHHCC
T ss_pred ccccccCc
Confidence 5556788
No 12
>3iz5_P 60S ribosomal protein L15 (L15E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_P 2zkr_m
Probab=99.97 E-value=2.6e-32 Score=236.02 Aligned_cols=126 Identities=43% Similarity=0.677 Sum_probs=110.8
Q ss_pred chHHHHHHHHHhhhcchhHHHHHhhhhhhhccCCceeeeCCCCCCchhhhccccccccceeEEEEEEEeecCCCCCC---
Q psy7821 70 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTLFSVQRYDVEEGNVQYPR--- 146 (231)
Q Consensus 70 MgaYKYV~elwrkkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr~drArrLGyKaKqG~~~vi~Rv~vrRggrK~p~--- 146 (231)
||||+||+|+|++||||+|+||+++|||||||+++|+|+++||+||||++|||||||| |||+||+|++||+|+|+
T Consensus 1 mg~Y~yi~e~wkk~~sd~~~~l~r~R~~e~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG--~Vv~RvrVRrGgrkrp~pkg 78 (204)
T 3iz5_P 1 MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQG--YVVYRVRVRRGGRKRPVPKG 78 (204)
T ss_dssp CCTHHHHHHHHHCTTSHHHHHHHHHHHHHHHHSCSEEEESSCSCHHHHTTTCCCCSTT--EEEEEEEEESSCCCCSCTTS
T ss_pred CcHHHHHHHHHhccccHHHHHHHHHHHHHHhcCCceEEcCCCCChHHHHhcCCccCCe--eEEEEEEEeeCCCCCCccCC
Confidence 9999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred ----CC------------Ccchhhhhhccch--hhhhh--------------hhhhcCCCCcccccCCcccccccCCccc
Q psy7821 147 ----VP------------TMNVSAEDVVTSV--FLKLL--------------LAIRRDPKVNWICKPVHKHREMRGLTSI 194 (231)
Q Consensus 147 ----kp------------~~q~iaeerlnSk--~~EvI--------------~~Ir~d~~~~wi~~~~hk~r~~rglTsa 194 (231)
|| |||+|||||.+-+ -.||+ ..|-=||.-+=|.++- ..--+|..
T Consensus 79 ~~~~kPk~~Gvn~lk~~rslq~iAEERagrk~~nLrVLNSYwV~eDg~yK~fEVILVDp~H~aIr~Dp----~~nWI~~~ 154 (204)
T 3iz5_P 79 IVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIILVDVAHSAIRNDP----RINWLCKP 154 (204)
T ss_dssp CCCSCGGGCCSSSSCCSSCHHHHHHHHHHHHSTTEEEEEEEEEEECSSEEEEEEEEEESSSHHHHTCT----TTGGGTSG
T ss_pred CcccCcccccccccCccccHHHHHHHHHhccCCCcEEeeeeeecCCCCcceEEEEEecCCchhhccCC----ccccccCc
Confidence 66 8999999997774 47888 6777777777777543 34445544
Q ss_pred ---cccccCC
Q psy7821 195 ---SKKSRGL 201 (231)
Q Consensus 195 ---g~k~rgl 201 (231)
++..|||
T Consensus 155 ~hk~Re~RGL 164 (204)
T 3iz5_P 155 VHKHRELRGL 164 (204)
T ss_dssp GGTTTTTTTC
T ss_pred hhccccccCC
Confidence 5667788
Done!