RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7821
(231 letters)
>gnl|CDD|144426 pfam00827, Ribosomal_L15e, Ribosomal L15.
Length = 192
Score = 150 bits (380), Expect = 1e-45
Identities = 92/226 (40%), Positives = 123/226 (54%), Gaps = 43/226 (19%)
Query: 2 GAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGKL 61
GAY++I EL++KKQSDVMR++ R+R W+YRQL + R RPTRPDKARR+GY+AKQG
Sbjct: 1 GAYKYIRELWKKKQSDVMRFLLRVRCWEYRQLPAIVRVERPTRPDKARRLGYKAKQG--- 57
Query: 62 PRSNTSSIMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMG 121
++ I+R+RV R+ P+ R K +RMG
Sbjct: 58 -------------YV--------------IYRVRV---RRGGRKRPRPKGGRYGKPKRMG 87
Query: 122 YRAKQVTLFSVQRYDVEEGNVQYPRVPTMNVS--AEDVVTSVFLKLLL-----AIRRDPK 174
+ S+Q E + P + +N +D + +L+ AIR DP+
Sbjct: 88 VNKLKPAK-SLQSIAEERAGRKCPNLRVLNSYWVGQDGTYKYYEVILVDPSHPAIRNDPR 146
Query: 175 VNWICKPVHKHREMRGLTSISKKSRGL-GKGHGFAQTIGGSRHAAW 219
+NWICKPVHKHRE RGLTS +KSRGL GKGHG +T S A W
Sbjct: 147 INWICKPVHKHREFRGLTSAGRKSRGLRGKGHGTEKTR-PSIRANW 191
>gnl|CDD|185402 PTZ00026, PTZ00026, 60S ribosomal protein L15; Provisional.
Length = 204
Score = 146 bits (370), Expect = 4e-44
Identities = 89/207 (42%), Positives = 117/207 (56%), Gaps = 48/207 (23%)
Query: 70 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTL 129
MGAY++++EL++KKQSDVMR++ R+R W+YRQL +HR RPTRPDKARR+GY+AKQ
Sbjct: 1 MGAYKYLNELWKKKQSDVMRFLLRVRTWEYRQLPVIHRVSRPTRPDKARRLGYKAKQG-- 58
Query: 130 FSVQRYDVEEGNVQYP-------------------RVPTMNVSAEDVV------------ 158
F + R V G + P + AE+ V
Sbjct: 59 FVIYRVRVRRGGRKRPVRKGIVYGKPKTQGVNKLKSTRNLRAVAEERVGKRCGNLRVLNS 118
Query: 159 -------TSVFLKLLL------AIRRDPKVNWICKPVHKHREMRGLTSISKKSRGL-GKG 204
T F +++L AIR DP++NWIC PVHKHRE+RGLTS +KSRGL KG
Sbjct: 119 YWVGQDSTYKFYEVILVDPFHNAIRNDPRINWICNPVHKHRELRGLTSAGRKSRGLRVKG 178
Query: 205 HGFAQTIGGSRHAAWVRRNTLELRRKR 231
H ++ + SR A W RRN + LRR R
Sbjct: 179 HRASK-LRPSRRANWKRRNRIVLRRYR 204
Score = 92.9 bits (231), Expect = 2e-23
Identities = 39/58 (67%), Positives = 52/58 (89%)
Query: 1 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQG 58
MGAY++++EL++KKQSDVMR++ R+R W+YRQL +HR RPTRPDKARR+GY+AKQG
Sbjct: 1 MGAYKYLNELWKKKQSDVMRFLLRVRTWEYRQLPVIHRVSRPTRPDKARRLGYKAKQG 58
>gnl|CDD|224547 COG1632, RPL15A, Ribosomal protein L15E [Translation, ribosomal
structure and biogenesis].
Length = 195
Score = 102 bits (256), Expect = 4e-27
Identities = 75/238 (31%), Positives = 111/238 (46%), Gaps = 52/238 (21%)
Query: 1 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGK 60
AY++I E ++K + V+R + R R+ ++R+ ++ R RPTR D+AR +GY+AKQG
Sbjct: 2 RSAYKYIREAWKKPKESVVRELLRQRLIEWRKEPSIVRIERPTRLDRARALGYKAKQG-- 59
Query: 61 LPRSNTSSIMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRM 120
++ + R+RV + + RP + + RM
Sbjct: 60 --------------YV--------------VVRVRVRRGGR-----NRKRPKKGRRPTRM 86
Query: 121 GYRAKQVTLFSVQRYDVEEGNVQYPRVPTMNV--SAEDVVTSVFLKLLL-----AIRRDP 173
G K S+Q E +YP + +N ED F +L+ AI+ DP
Sbjct: 87 GVN-KIKRKKSLQFIAEERAGRKYPNLEVLNSYWVGEDGYYKYFEVILVDPRHPAIKNDP 145
Query: 174 KVNWICKPVHKHREMRGLTSISKKSRGLGKGHGFAQTIGGSRHAAWVRRNTLELRRKR 231
+NWIC+PVHK R RGLTS KKSRGL KG + A R +T L+R R
Sbjct: 146 NLNWICRPVHKGRVFRGLTSAGKKSRGLRKGG---------KGAEKKRPSTRALQRYR 194
>gnl|CDD|235263 PRK04243, PRK04243, 50S ribosomal protein L15e; Validated.
Length = 196
Score = 69.2 bits (170), Expect = 1e-14
Identities = 62/211 (29%), Positives = 93/211 (44%), Gaps = 43/211 (20%)
Query: 1 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGK 60
M Y +I E +++ + + + R+ ++R+ + R RPTR D+AR +GY+AKQG
Sbjct: 3 MSMYSYIREAWKRPKESYVGELMWQRLQEWRREPAVVRIERPTRLDRARALGYKAKQG-- 60
Query: 61 LPRSNTSSIMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRM 120
+ + R+RV + R PRP + +RM
Sbjct: 61 --------------IV--------------VVRVRVRRGGL-----RKPRPKGGRRPKRM 87
Query: 121 GYRAKQVTLFSVQRYDVEEGNVQYPRVPTMNVS--AEDVVTSVFLKLLL-----AIRRDP 173
G K S+QR E +YP + +N ED + +L+ AI+ DP
Sbjct: 88 GVN-KITPAKSIQRIAEERAARKYPNLEVLNSYWVGEDGKYKWYEVILVDPHHPAIKNDP 146
Query: 174 KVNWICKPVHKHREMRGLTSISKKSRGLGKG 204
+NWIC H+ R RGLTS KK RGL K
Sbjct: 147 DLNWICDKSHRGRVFRGLTSAGKKGRGLRKK 177
>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase. This model
represents a long form of D-3-phosphoglycerate
dehydrogenase, the serA gene of one pathway of serine
biosynthesis. Shorter forms, scoring between trusted and
noise cutoff, include SerA from E. coli [Amino acid
biosynthesis, Serine family].
Length = 525
Score = 30.0 bits (68), Expect = 0.98
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 14/87 (16%)
Query: 115 DKARRMGYRAKQVTLFSVQRYDVE-EGNVQYPRVPTMNVSAEDVVTSVFLKLLLAIRRDP 173
D A ++G A Q+ +VQ +V G + T N + +T LK LL+ D
Sbjct: 328 DLAEKLGKLAGQLLDGAVQSVEVTYRGEL-----ATENS---EPLTRAALKGLLSPVLDD 379
Query: 174 KVNWI-CKPVHKHREMRGLT-SISKKS 198
+VN + V K RG+T SK
Sbjct: 380 EVNMVNAPAVAKE---RGITVEESKSE 403
>gnl|CDD|238801 cd01567, NAPRTase_PncB, Nicotinate phosphoribosyltransferase
(NAPRTase) family. Nicotinate phosphoribosyltransferase
catalyses the formation of NAMN and PPi from
5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic
acid, this is the first, and also rate limiting,
reaction in the NAD salvage synthesis. This salvage
pathway serves to recycle NAD degradation products.
Length = 343
Score = 28.8 bits (65), Expect = 2.7
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 130 FSVQRYDVEEGNVQYPRVPTMNVSAEDVVTSVFLKLLLAI 169
++ Y + EG V +P+ P + + + LLAI
Sbjct: 84 LPLEIYALPEGTVVFPKEPLLTIEGPWPEAGLLETPLLAI 123
>gnl|CDD|213362 cd12828, TmCorA-like_1, Thermotoga maritima CorA_like subfamily.
This subfamily belongs to the Thermotoga maritima CorA
(TmCorA)-family of the MIT superfamily of essential
membrane proteins involved in transporting divalent
cations (uptake or efflux) across membranes. Members of
this subfamily are found in all three kingdoms of life.
It is functionally diverse subfamily, in addition to the
CorA Co2+ transporter from the hyperthermophilic
Thermotoga maritima, it includes Methanosarcina mazei
CorA which may be involved in transport of copper and/or
other divalent metal ions. Thermotoga maritima CorA
forms funnel-shaped homopentamers, the tip of the funnel
is formed from two C-terminal transmembrane (TM) helices
from each monomer, and the large opening of the funnel
from the N-terminal cytoplasmic domains. The GMN
signature motif of the MIT superfamily occurs just after
TM1, mutation within this motif is known to abolish Mg2+
transport by a related protein, Saccharomyces cerevisiae
Alr1p. Natural variants in this signature sequence may
be associated with the transport of different divalent
cations. The functional diversity of the MIT superfamily
may also be due to minor structural differences
regulating gating, substrate selection, and transport.
Length = 294
Score = 28.2 bits (64), Expect = 3.7
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 9 ELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTR 44
EL + + IH+++ R+L L R+ P R
Sbjct: 141 ELLENPTPETLERIHKLK----RELLFLRRSIWPLR 172
Score = 28.2 bits (64), Expect = 3.7
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 78 ELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTR 113
EL + + IH+++ R+L L R+ P R
Sbjct: 141 ELLENPTPETLERIHKLK----RELLFLRRSIWPLR 172
>gnl|CDD|218042 pfam04357, DUF490, Family of unknown function (DUF490).
Length = 365
Score = 27.7 bits (62), Expect = 5.3
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 130 FSVQRYDVEEGNVQY----PRVPTMNVSAEDVVTSVFLKLLLAIR 170
+R+D++ G V + P P +++ A V S + + L +
Sbjct: 171 LYGRRFDLDRGRVTFSGDPPDDPYLDIEAIRRVQSDDVTVGLRVT 215
>gnl|CDD|173163 PRK14700, PRK14700, recombination factor protein RarA; Provisional.
Length = 300
Score = 27.7 bits (61), Expect = 5.8
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 9 ELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKA 48
EL+ + + R HR Y QL+ H++ R T PD A
Sbjct: 106 ELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAA 145
Score = 27.7 bits (61), Expect = 5.8
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 78 ELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKA 117
EL+ + + R HR Y QL+ H++ R T PD A
Sbjct: 106 ELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAA 145
>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component.
Length = 463
Score = 27.4 bits (60), Expect = 6.5
Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 6/111 (5%)
Query: 54 RAKQGGKLPRSNTSSIMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTR 113
RA G P S+ + S S+ +HR + H P
Sbjct: 9 RASTRGSSPSLFGKSLQSSRVAASSPSLLSGSETGALLHR-----GNHAHSFHNLALPGN 63
Query: 114 PDKARRMGYRAKQVTLFSVQRYDVEEGNVQYPRVPTMNVSAEDVVTSVFLK 164
+R + + + V+ + E G+ VP M S D + FLK
Sbjct: 64 SGISRSASLVSSTLQRW-VRPFSSESGDTVEAVVPHMGESITDGTLATFLK 113
>gnl|CDD|168717 PRK06882, PRK06882, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 27.6 bits (61), Expect = 7.2
Identities = 10/46 (21%), Positives = 19/46 (41%)
Query: 13 KKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQG 58
K Q+D+ + +I W+ ++ R +P + YR G
Sbjct: 342 KSQTDLTAWWQQINEWKAKKCLEFDRTSDVIKPQQVVEAIYRLTNG 387
>gnl|CDD|197284 cd09188, PLDc_FAM83H_N, N-terminal phospholipase D-like domain of
the uncharacterized protein, Family with sequence
similarity 83H. N-terminal phospholipase D (PLD)-like
domain of the protein, Family with sequence similarity
83H (FAM83H) on chromosome 8q24.3, which localizes in
the intracellular environment and is associated with
vesicles, can be regulated by kinases, and plays
important roles during ameloblast differentiation and
enamel matrix calcification. The gene encoding protein
FAM83H is the first gene involved in the etiology of
amelogenesis imperfecta (AI), that encodes a
non-secreted protein due to the absence of a signal
peptide. Defects in gene FAM83H cause autosomal dominant
hypocalcified amelogenesis imperfecta (ADHCAI). Since
the N-terminal PLD-like domain of FAM83H shows only
trace similarity to the PLD catalytic domain and lacks
the functionally important histidine residue, FAM83H may
share a similar three-dimensional fold with PLD enzymes,
but is most unlikely to carry PLD activity.
Length = 265
Score = 27.1 bits (60), Expect = 7.6
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 101 QLTTLHRAPRPTRP---DKARRMGYRAKQV 127
++TTL + P P P ++ARRM A+QV
Sbjct: 105 EVTTLVQPPPPDNPSIKEEARRMIRSAQQV 134
>gnl|CDD|171868 PRK13128, PRK13128, D-aminopeptidase; Reviewed.
Length = 518
Score = 27.1 bits (60), Expect = 9.7
Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 4/103 (3%)
Query: 30 YRQLTTLHRAPRPT--RPDKARRMGYRAKQGGKLPRSNTSSIMGAYRFISELYRKKQSDV 87
Y LT L A PD+A+ + R K P ++ S G +R +++L +
Sbjct: 113 YWALTVLCGAAPEGIFLPDQAQNLLRRLKTTHFAPGTHYSYCNGNFRILADLIEQHTGRS 172
Query: 88 MRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTLF 130
+ + R++ + T P D+ GY V F
Sbjct: 173 LADLLAERIFAPAGMKTAELIPDTALFDEC--TGYEGDTVRGF 213
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.136 0.415
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,037,363
Number of extensions: 1096597
Number of successful extensions: 1205
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1199
Number of HSP's successfully gapped: 33
Length of query: 231
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 137
Effective length of database: 6,768,326
Effective search space: 927260662
Effective search space used: 927260662
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.9 bits)