RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7821
         (231 letters)



>gi|147919682|ref|YP_686574.1|(2-194:196) 50S ribosomal protein L15e
           [uncultured methanogenic archaeon RC-I] 
           gi|121682947|sp|Q0W2Z5.1|RL15E_UNCMA RecName: Full=50S
           ribosomal protein L15e   gi|110621970|emb|CAJ37248.1|
           50S ribosomal protein L15E [uncultured methanogenic
           archaeon RC-I]  E=2e-63 s/c=1.26 id=63% cov=99%
          Length = 193

 Score =  144 bits (364), Expect = 7e-44
 Identities = 55/227 (24%), Positives = 90/227 (39%), Gaps = 43/227 (18%)

Query: 2   GAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGKL 61
            AY +I + ++      +  +   R+ ++R+  T+ +  RPTR D+AR +GY+AKQG   
Sbjct: 3   SAYSYIRDAWKNPSKTYVGELFWERLQEWRKEPTVVKIDRPTRLDRARALGYKAKQG--- 59

Query: 62  PRSNTSSIMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMG 121
                         I              + R  V          R  R +R  K++ MG
Sbjct: 60  -------------II--------------VARAHV-----RRGGRRKSRYSRGRKSKHMG 87

Query: 122 YRAKQVTLFSVQRYDVEEGNVQYPRVPTMNVS--AEDVVTSVFLKLLL-----AIRRDPK 174
            R       S+QR      + ++P +  +N     +D     +  +L+     +I  D  
Sbjct: 88  LRTLTRRT-SIQRMAEVRASRKFPNMEVLNSYWVGQDGKHKWYEIILVDPHHPSIASDKN 146

Query: 175 VNWICKPVHKHREMRGLTSISKKSRGLGKGHGFAQTIGGSRHAAWVR 221
           ++WI K  H+ R  RGLTS  KK RG  +     +    S  A   R
Sbjct: 147 LSWITKGTHRGRAERGLTSAGKKGRGQRRKGKGTEKNYPSVQAHDRR 193


>d1vqom1 d.12.1.2 (M:1-194) Ribosomal protein L15e {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 194

 Score =  134 bits (340), Expect = 2e-40
 Identities = 49/227 (21%), Positives = 82/227 (36%), Gaps = 43/227 (18%)

Query: 2   GAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGKL 61
            AY +I + +       +  +   R  ++R    + R  RPTR DKAR  GY+AKQG   
Sbjct: 3   SAYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQG--- 59

Query: 62  PRSNTSSIMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMG 121
                         I              + R+ V          R  R     +++R G
Sbjct: 60  -------------VI--------------VARVSV-----RKGSARKRRHKAGRRSKRQG 87

Query: 122 YRAKQVTLFSVQRYDVEEGNVQYPRVPTMNV--SAEDVVTSVFLKLLL-----AIRRDPK 174
              +      +QR   E  +  +P +  +N     +D        +L+     AI+ D  
Sbjct: 88  VT-RITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPNHPAIQNDDD 146

Query: 175 VNWICKPVHKHREMRGLTSISKKSRGLGKGHGFAQTIGGSRHAAWVR 221
           ++WIC      R  RGLT   +++RGL      ++    S  +   +
Sbjct: 147 LSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSEKTRPSLRSNGGK 193


>d1uyja_ f.8.1.2 (A:) Epsilon-toxin, ETX {Clostridium perfringens
           [TaxId: 1502]}
          Length = 280

 Score = 30.3 bits (68), Expect = 0.18
 Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 3/87 (3%)

Query: 65  NTSSIMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMG--- 121
              ++ G  + + ++   +  ++  Y+   R      L+                 G   
Sbjct: 169 KKVNVKGNVKLVGQVSGSEWGEIPSYLAFPRDGYKFSLSDTVNKSDLNEDGTININGKGN 228

Query: 122 YRAKQVTLFSVQRYDVEEGNVQYPRVP 148
           Y A       V+  ++   NVQ   +P
Sbjct: 229 YSAVMGDELIVKVRNLNTNNVQEYVIP 255


>d2f7fa2 d.41.2.1 (A:4-140) Putative nicotinate
           phosphoribosyltransferase EF2626 {Enterococcus faecalis
           [TaxId: 1351]}
          Length = 137

 Score = 26.3 bits (58), Expect = 1.9
 Identities = 6/40 (15%), Positives = 13/40 (32%)

Query: 130 FSVQRYDVEEGNVQYPRVPTMNVSAEDVVTSVFLKLLLAI 169
           F        EG++ +   P + +        +    LL +
Sbjct: 92  FKCTVRSALEGDLVFNNEPLIQIEGPLAQCQLVETALLNM 131


>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO
           {Bacillus subtilis [TaxId: 1423]}
          Length = 143

 Score = 24.6 bits (53), Expect = 8.7
 Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 73  YRFISELYRKKQSDVMRYI--HRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVT 128
              +  L++K Q +++  +    +   Q   L +L +       + A RM  +   VT
Sbjct: 10  QLSLQALFQKIQPEMLESMEKQGVTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVT 67


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.136    0.415 

Gapped
Lambda     K      H
   0.267   0.0626    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 884,364
Number of extensions: 39849
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 15
Length of query: 231
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,281,736
Effective search space: 190978664
Effective search space used: 190978664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.6 bits)