BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7826
(213 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S-
Adenosyl Homocysteine
pdb|1KR5|A Chain A, Crystal Structure Of Human L-Isoaspartyl Methyltransferase
Length = 226
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 100/157 (63%)
Query: 57 LVEHLKETLFIESELPYKAMLAVDRGHYTTWRPYANCITNIGYGAHMQAPFQQAMVLDDL 116
L+ +L++ I+++ ++ MLA DR HY PY + +IG+ A + AP A L+ L
Sbjct: 12 LIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAPHMHAYALELL 71
Query: 117 SEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVK 176
++L EG K LD+GSG+G TA A VG TGKVIGI+HI +LV + +NV +P +
Sbjct: 72 FDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLS 131
Query: 177 DGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEGI 213
GR++ V+GDGR GY +EAPYD IHVG + +P+ +
Sbjct: 132 SGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQAL 168
>pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With
S-Adenosyl-L- Homocysteine
Length = 227
Score = 113 bits (282), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 89/161 (55%), Gaps = 5/161 (3%)
Query: 55 EYLVEHLKETLFIESELPYKAMLAVDRGHYTTWRPYANCITNIGYGAHMQAPFQQAMVLD 114
E L+ LK+ I S+ +AM DR HY+ PY + IG G + AP A L+
Sbjct: 17 EDLIRQLKDHGVIASDAVAQAMKETDRKHYSPRNPYMDAPQPIGGGVTISAPHMHAFALE 76
Query: 115 DLSEELTEGKKVLDIGSGNGYFTA-----LLAWCVGKTGKVIGIEHIPQLVQRATHNVIS 169
L + L G ++LD+GSG+GY TA + A V +++GIEH +LV+R+ N+ +
Sbjct: 77 YLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNT 136
Query: 170 GNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIP 210
+ + G++ V GDGRKGY APY+ IHVG + D P
Sbjct: 137 DDRSMLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTP 177
>pdb|2PBF|A Chain A, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
pdb|2PBF|B Chain B, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
Length = 227
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 83/172 (48%), Gaps = 8/172 (4%)
Query: 48 KMEKKPMEYLVEHLKETLFIESELPYKAMLAVDRGHYTTWRPYANCITNIGYGAHMQAPF 107
K+ + + L+E+LK I+ + Y ML VDRG Y PY + I +G + AP
Sbjct: 6 KLSENNHKSLLENLKRRGIIDDDDVYNTMLQVDRGKYIKEIPYIDTPVYISHGVTISAPH 65
Query: 108 QQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCV----GKTGKVIGIEHIPQLVQRA 163
A+ L L L G + +D+GSG+GY T +A + K VIG+E + LV +
Sbjct: 66 MHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFS 125
Query: 164 THNVISGNPEFVKDGRIKFVLGDGRKGYLDEAP----YDIIHVGGSIEDIPE 211
N+ PE +K K + + + +E +D IHVG S ++PE
Sbjct: 126 LENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASELPE 177
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 74/157 (47%), Gaps = 31/157 (19%)
Query: 55 EYLVEHLKETLFIESELPYKAMLAVDRGHYTTWRPYANCITNIGYGAHMQAPFQQAMVLD 114
E+L EHLKE ++++ L IGYG + A M+ +
Sbjct: 36 EFLPEHLKEYAYVDTPL------------------------EIGYGQTISAIHMVGMMCE 71
Query: 115 DLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEF 174
L +L G KVL+IG+G GY A+ A VG+ G V+ IE IP+L ++A +
Sbjct: 72 LL--DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTL-----RK 124
Query: 175 VKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
+ + ++GDG GY APYD I+ + IPE
Sbjct: 125 LGYDNVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIPE 161
>pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosylmethionine
pdb|1JG3|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG3|B Chain B, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG2|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With Adenosine
pdb|1JG1|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosyl-L-Homocysteine
Length = 235
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 79/158 (50%), Gaps = 13/158 (8%)
Query: 58 VEHLKETLFIESELPYKAMLAVDR--GHYTTWRPYANC--ITNIGYGAHMQAPFQQAMVL 113
VE LK I S+ +A L R ++ YA+ I G + AP A++L
Sbjct: 25 VEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIML 84
Query: 114 DDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPE 173
+ + L G +L++G+G+G+ AL++ V KT V IE IP+LV+ A N+ E
Sbjct: 85 EIAN--LKPGMNILEVGTGSGWNAALISEIV-KT-DVYTIERIPELVEFAKRNL-----E 135
Query: 174 FVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
+ +LGDG KG+ +APYD+I V IPE
Sbjct: 136 RAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPE 173
>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase
pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransferase
Length = 317
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 5/92 (5%)
Query: 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR 179
L +G +VL+IG G GY A+++ VG+ G V+ +E+ ++ + A NV E +
Sbjct: 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNV-----ERLGIEN 127
Query: 180 IKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
+ FV GDG G + +PYD+I V ++++PE
Sbjct: 128 VIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPE 159
>pdb|3LBF|A Chain A, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|B Chain B, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|C Chain C, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|D Chain D, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
Length = 210
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 15/169 (8%)
Query: 49 MEKKPMEYLVEHLKETLFIESELPYKAMLAVDRGHYT----TWRPYANCITNIGYGAHMQ 104
M + ++ L++ L+ I+ E A+ AV R + + + N IG G +
Sbjct: 3 MVSRRVQALLDQLRAQ-GIQDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQTIS 61
Query: 105 APFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRAT 164
P+ A + + L ELT +VL+IG+G+GY TA+LA V V I+ + +R
Sbjct: 62 QPYMVARMTELL--ELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRL 119
Query: 165 HNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEGI 213
N+ N + GDG +G+ AP+D I V + +IP +
Sbjct: 120 KNLDLHN--------VSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTAL 160
>pdb|1VBF|A Chain A, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|B Chain B, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|C Chain C, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|D Chain D, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
Length = 231
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 12/90 (13%)
Query: 113 LDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNP 172
LD+L +L +G+KVL+IG+G GY+TAL+A V KV+ +E + +N S
Sbjct: 63 LDEL--DLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVE-----INEKXYNYASKLL 112
Query: 173 EFVKDGRIKFVLGDGRKGYLDEAPYDIIHV 202
+ + IK +LGDG GY +E PYD + V
Sbjct: 113 SYYNN--IKLILGDGTLGYEEEKPYDRVVV 140
>pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase
(Tm0748) From Thermotoga Maritima At 1.65 A Resolution
Length = 277
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNV 167
AM+LD + EG +++D G G+G A+LA VG +GKV E + + A N+
Sbjct: 105 AMMLD-----VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNL 157
>pdb|3E7P|A Chain A, Crystal Structure Of Of Putative Methyltransferase From
Bacteroides Vulgatus Atcc 8482
Length = 270
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 8/120 (6%)
Query: 92 NCITNIGYGAHMQAPFQQAMVLDDLS--EELTEGKKVLDIGSGNGYFTALLAWCVGKTGK 149
N I + Q P + L LS + LT + D+G G G T +LA V GK
Sbjct: 15 NLICDFFLNTERQGPGSPEVTLKALSFIDNLTNKSLIADLGCGTGGQTMILAQHV--PGK 72
Query: 150 VIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDI 209
+ GI+ P ++R N N + R+K ++G ++ D+I G+I +I
Sbjct: 73 ITGIDFFPGFIERFNKNAEKLNLQ----NRVKGIVGSMDDLSFEKDSLDLIWSEGAIYNI 128
>pdb|3T7R|A Chain A, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7R|B Chain B, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|A Chain A, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|B Chain B, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|C Chain C, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|D Chain D, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|A Chain A, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|B Chain B, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|C Chain C, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|D Chain D, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
Length = 268
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 8/120 (6%)
Query: 92 NCITNIGYGAHMQAPFQQAMVLDDLS--EELTEGKKVLDIGSGNGYFTALLAWCVGKTGK 149
N I + Q P + L LS + LT + D+G G G T +LA V GK
Sbjct: 20 NLICDFFLNTERQGPGSPEVTLKALSFIDNLTNKSLIADLGCGTGGQTMILAQHV--PGK 77
Query: 150 VIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDI 209
+ GI+ P ++R N N + R+K ++G ++ D+I G+I +I
Sbjct: 78 ITGIDFFPGFIERFNKNAEKLNLQ----NRVKGIVGSMDDLSFEKDSLDLIWSEGAIYNI 133
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNV 167
L EG VLD+G+G G++ L+ VG+ GKV I+ ++V A V
Sbjct: 35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKV 82
>pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Target Btr309
Length = 257
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 16/96 (16%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 178
ELT+ K+ DIG G G T LA V G++ GI+ P ++ N + N
Sbjct: 43 ELTDDAKIADIGCGTGGQTLFLADYV--KGQITGIDLFPDFIEIFNENAVKANCA----D 96
Query: 179 RIKFVLGDGRKGYLDEAPY-----DIIHVGGSIEDI 209
R+K G G +D P+ D+I G+I +I
Sbjct: 97 RVK-----GITGSMDNLPFQNEELDLIWSEGAIYNI 127
>pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SVZ|B Chain B, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SXJ|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3SXJ|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
Length = 263
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 16/96 (16%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 178
ELT+ K+ DIG G G T LA V G++ GI+ P ++ N + N
Sbjct: 49 ELTDDAKIADIGCGTGGQTLFLADYV--KGQITGIDLFPDFIEIFNENAVKANCA----D 102
Query: 179 RIKFVLGDGRKGYLDEAPY-----DIIHVGGSIEDI 209
R+K G G +D P+ D+I G+I +I
Sbjct: 103 RVK-----GITGSMDNLPFQNEELDLIWSEGAIYNI 133
>pdb|2PWY|A Chain A, Crystal Structure Of A M1a58 Trna Methyltransferase
pdb|2PWY|B Chain B, Crystal Structure Of A M1a58 Trna Methyltransferase
Length = 258
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 178
+L G +VL+ G+G+G T LA VG+ G V E P + +A NV + F +
Sbjct: 93 DLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRA----FWQVE 148
Query: 179 RIKFVLGDGRKGYLDEAPYD 198
++F LG + L+EA YD
Sbjct: 149 NVRFHLGKLEEAELEEAAYD 168
>pdb|2B25|A Chain A, Human Putative Trna(1-Methyladenosine)methyltransferase
pdb|2B25|B Chain B, Human Putative Trna(1-Methyladenosine)methyltransferase
Length = 336
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 20/132 (15%)
Query: 83 HYTTWRP-YANCITNIGYGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLA 141
Y RP + + + G + P M+L + ++ G VL+ GSG+G + L+
Sbjct: 67 QYMLRRPALEDYVVLMKRGTAITFPKDINMILSMM--DINPGDTVLEAGSGSGGMSLFLS 124
Query: 142 WCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAP--YDI 199
VG G+VI E V++ H++ N + +D + +++E P D
Sbjct: 125 KAVGSQGRVISFE-----VRKDHHDLAKKNYKHWRDS--------WKLSHVEEWPDNVDF 171
Query: 200 IH--VGGSIEDI 209
IH + G+ EDI
Sbjct: 172 IHKDISGATEDI 183
>pdb|4AX8|A Chain A, Medium Resolution Structure Of The Bifunctional Kinase-
Methyltransferase Wbdd
Length = 569
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 20/103 (19%)
Query: 114 DDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISG--- 170
D+LS L VLD+G G+F+ LA K ++GI+ Q+ NV
Sbjct: 58 DNLSRALGRPLNVLDLGCAQGFFSLSLA---SKGATIVGID-----FQQENINVCRALAE 109
Query: 171 -NPEFVKD---GRIKFVLGDGRKGYLDEAP-----YDIIHVGG 204
NP+F + GRI+ V+ +G D A + I+H+ G
Sbjct: 110 ENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFHHIVHLHG 152
>pdb|4AZS|A Chain A, High Resolution (2.2 A) Crystal Structure Of Wbdd.
pdb|4AZT|A Chain A, Co-Crystal Structure Of Wbdd And Kinase Inhibitor
Ly294002.
pdb|4AZV|A Chain A, Co-crystal Structure Of Wbdd And Kinase Inhibitor
Gw435821x
Length = 569
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 20/103 (19%)
Query: 114 DDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISG--- 170
D+LS L VLD+G G+F+ LA K ++GI+ Q+ NV
Sbjct: 58 DNLSRALGRPLNVLDLGCAQGFFSLSLA---SKGATIVGID-----FQQENINVCRALAE 109
Query: 171 -NPEFVKD---GRIKFVLGDGRKGYLDEAP-----YDIIHVGG 204
NP+F + GRI+ V+ +G D A + I+H+ G
Sbjct: 110 ENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFHHIVHLHG 152
>pdb|4AZW|A Chain A, Crystal Structure Of Monomeric Wbdd
Length = 471
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 15/89 (16%)
Query: 114 DDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISG--- 170
D+LS L VLD+G G+F+ LA K ++GI+ Q+ NV
Sbjct: 58 DNLSRALGRPLNVLDLGCAQGFFSLSLA---SKGATIVGID-----FQQENINVCRALAE 109
Query: 171 -NPEFVKD---GRIKFVLGDGRKGYLDEA 195
NP+F + GRI+ V+ +G D A
Sbjct: 110 ENPDFAAEFRVGRIEEVIAALEEGEFDLA 138
>pdb|3BKX|A Chain A, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
pdb|3BKX|B Chain B, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
Length = 275
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIE 154
++ G+K+L+IG G G +A+LA VG +G V GI+
Sbjct: 40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGID 75
>pdb|3EEY|A Chain A, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|B Chain B, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|C Chain C, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|D Chain D, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|E Chain E, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|F Chain F, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|G Chain G, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|H Chain H, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|I Chain I, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|J Chain J, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
Length = 197
Score = 33.9 bits (76), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGN----PEFVKD 177
EG V+D GNG TA LA VG+ G+V G + + + T + N +KD
Sbjct: 22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKD 81
Query: 178 G 178
G
Sbjct: 82 G 82
>pdb|2YVL|A Chain A, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|B Chain B, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|C Chain C, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|D Chain D, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
Length = 248
Score = 33.5 bits (75), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 84 YTTWRPYANCITNIGYGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWC 143
+ +RP I +G+ Q + + L L + K+VL+ G+G+G ALLA
Sbjct: 53 FEVYRPTLEEIILLGFERKTQIIYPKDSFYIALKLNLNKEKRVLEFGTGSG---ALLAVL 109
Query: 144 VGKTGKVIGIEHIPQLVQRATHNVISGN 171
G+V E + + + A N+ N
Sbjct: 110 SEVAGEVWTFEAVEEFYKTAQKNLKKFN 137
>pdb|4FR0|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With Sam
pdb|4FS8|A Chain A, The Structure Of An As(Iii) S-Adenosylmethionine
Methyltransferase: Insights Into The Mechanism Of
Arsenic Biotransformation
pdb|4FSD|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With As(Iii)
Length = 383
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNV 167
EG VLD+G G G L + VG+ GKVIG++ + ++ A V
Sbjct: 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYV 128
>pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|C Chain C, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|E Chain E, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|G Chain G, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|I Chain I, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|K Chain K, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|M Chain M, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|O Chain O, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
Length = 254
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 111 MVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNV 167
+ L L+ L G KVLD+G+G+G A+ A +G GK +G++ P ++ +A N
Sbjct: 109 LALKALARHLRPGDKVLDLGTGSGVL-AIAAEKLG--GKALGVDIDPMVLPQAEANA 162
>pdb|1UFK|A Chain A, Crystal Structure Of Tt0836
pdb|2NXE|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXE|B Chain B, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXJ|A Chain A, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXJ|B Chain B, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXN|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With Ribosomal Protein L11
pdb|2NXC|A Chain A, Apo-Form Of T. Thermophilus Ribosomal Protein L11
Methyltransferase (Prma)
pdb|3CJQ|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|D Chain D, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|G Chain G, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJR|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Ribosomal Protein L11 (k39a) And Inhibitor
Sinefungin.
pdb|3EGV|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Trimethylated Ribosomal Protein L11
pdb|2ZBP|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Methionine
pdb|2ZBQ|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Homocysteine
pdb|2ZBR|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-adenosyl-ornithine
Length = 254
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 111 MVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNV 167
+ L L+ L G KVLD+G+G+G A+ A +G GK +G++ P ++ +A N
Sbjct: 109 LALKALARHLRPGDKVLDLGTGSGVL-AIAAEKLG--GKALGVDIDPMVLPQAEANA 162
>pdb|1I9G|A Chain A, Crystal Structure Of An Adomet Dependent Methyltransferase
Length = 280
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNV 167
++ G +VL+ G+G+G T L VG G+VI E + A NV
Sbjct: 96 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNV 144
>pdb|2VS1|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
(Uracil-54, C5)-Methyltransferase In Complex With
S-Adenosyl-L- Homocysteine
Length = 425
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 94 ITNIGYGAHMQAPFQ----QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLA 141
+ ++ Y H + FQ QA+ L EL EG+K+LD+ SG G F LA
Sbjct: 258 LDDVDYLIHPNSFFQTNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLA 309
>pdb|2JJQ|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
(Uracil-54, C5)-Methyltransferase In Complex With
S-Adenosyl-L- Homocysteine
Length = 425
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 94 ITNIGYGAHMQAPFQ----QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLA 141
+ ++ Y H + FQ QA+ L EL EG+K+LD+ SG G F LA
Sbjct: 258 LDDVDYLIHPNSFFQTNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLA 309
>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
pdb|3R3H|B Chain B, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
Length = 242
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 101 AHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVI 151
A+MQ +QA + L LT KKVL++G+ GY ++ + G+VI
Sbjct: 40 ANMQVAPEQAQFMQMLIR-LTRAKKVLELGTFTGYSALAMSLALPDDGQVI 89
>pdb|4DF3|A Chain A, Crystal Structure Of Aeropyrum Pernix Fibrillarin In
Complex With Natively Bound S-adenosyl-l-methionine At
1.7a
pdb|4DF3|B Chain B, Crystal Structure Of Aeropyrum Pernix Fibrillarin In
Complex With Natively Bound S-adenosyl-l-methionine At
1.7a
Length = 233
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR 179
+ EG ++L +G +G + ++ +G G++ G+E P R ++++ V+D R
Sbjct: 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAP----RVMRDLLT----VVRDRR 126
Query: 180 IKF-VLGDGR 188
F +LGD R
Sbjct: 127 NIFPILGDAR 136
>pdb|3KKZ|A Chain A, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250.
pdb|3KKZ|B Chain B, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250
Length = 267
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 8/120 (6%)
Query: 92 NCITNIGYGAHMQAPFQQAMVLDDLS--EELTEGKKVLDIGSGNGYFTALLAWCVGKTGK 149
N I + Q P + L LS + LTE + DIG G G T +LA V TG+
Sbjct: 14 NLICDFFSNXERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTXVLAGHV--TGQ 71
Query: 150 VIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDI 209
V G++ + + N + R+ ++G D+I G+I +I
Sbjct: 72 VTGLDFLSGFIDIFNRNARQSGLQ----NRVTGIVGSXDDLPFRNEELDLIWSEGAIYNI 127
>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A
Cationdependent O-Methyltransferase From The
Cyanobacterium Synechocystis Sp. Strain Pcc 6803
Length = 232
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 100 GAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIP 157
GA MQ +QA L L LT K+VL+IG GY +A + G++I + P
Sbjct: 51 GAPMQISPEQAQFLG-LLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDP 107
>pdb|2ZUL|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533) In Complex With
Cofactor S-Adenosyl-L-Methionine
pdb|2ZWV|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533)
Length = 375
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 29/141 (20%)
Query: 85 TTWRPYANCITNIGYGAH-MQAPFQQA-------MVLDDLSEEL----TEGKKVLDIGSG 132
+ WR ++ I Y H + F ++L+ L E L G++VLD+G+G
Sbjct: 184 SLWRAFSARILGAEYTFHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAG 243
Query: 133 NGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG-RIKFVLGDGRKGY 191
G T LA +V+G+E +V+S + + + + D +
Sbjct: 244 YGALTLPLARM---GAEVVGVED-------DLASVLSLQKGLEANALKAQALHSDVDEAL 293
Query: 192 LDEAPYDII------HVGGSI 206
+EA +DII HVGG++
Sbjct: 294 TEEARFDIIVTNPPFHVGGAV 314
>pdb|3DMF|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet
pdb|3DMG|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adohcy
pdb|3DMH|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet And Guanosine
Length = 381
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 29/141 (20%)
Query: 85 TTWRPYANCITNIGYGAH-MQAPFQQA-------MVLDDLSEEL----TEGKKVLDIGSG 132
+ WR ++ I Y H + F ++L+ L E L G++VLD+G+G
Sbjct: 184 SLWRAFSARILGAEYTFHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAG 243
Query: 133 NGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG-RIKFVLGDGRKGY 191
G T LA +V+G+E +V+S + + + + D +
Sbjct: 244 YGALTLPLARM---GAEVVGVED-------DLASVLSLQKGLEANALKAQALHSDVDEAL 293
Query: 192 LDEAPYDII------HVGGSI 206
+EA +DII HVGG++
Sbjct: 294 TEEARFDIIVTNPPFHVGGAV 314
>pdb|1G8A|A Chain A, Pyrococcus Horikoshii Fibrillarin Pre-Rrna Processing
Protein
Length = 227
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 123 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQ 161
GK VL +G +G + ++ VG GK+ GIE P++++
Sbjct: 74 GKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLR 112
>pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Methionine
Length = 255
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 81 RGH-YTTWRPY-ANCITNIGYGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTA 138
+GH + RP + + + G + P A+++ ++ G +++ G G+G T
Sbjct: 52 KGHEFKILRPRIVDYLDKMKRGPQIVHPKDAALIV--AYAGISPGDFIVEAGVGSGALTL 109
Query: 139 LLAWCVGKTGKVIGIEHIPQLVQRATHNV 167
LA VG G+V+ E + A N+
Sbjct: 110 FLANIVGPEGRVVSYEIREDFAKLAWENI 138
>pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
Length = 253
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 81 RGH-YTTWRPY-ANCITNIGYGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTA 138
+GH + RP + + + G + P A+++ ++ G +++ G G+G T
Sbjct: 52 KGHEFKILRPRIVDYLDKMKRGPQIVHPKDAALIV--AYAGISPGDFIVEAGVGSGALTL 109
Query: 139 LLAWCVGKTGKVIGIEHIPQLVQRATHNV 167
LA VG G+V+ E + A N+
Sbjct: 110 FLANIVGPEGRVVSYEIREDFAKLAWENI 138
>pdb|1VIM|A Chain A, Crystal Structure Of An Hypothetical Protein
pdb|1VIM|B Chain B, Crystal Structure Of An Hypothetical Protein
pdb|1VIM|C Chain C, Crystal Structure Of An Hypothetical Protein
pdb|1VIM|D Chain D, Crystal Structure Of An Hypothetical Protein
Length = 200
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 154 EHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEA-PYDIIHVGGSIEDIPEG 212
EHI L + + + R FV+G GR GY+ +A ++H+G ++ + E
Sbjct: 23 EHIKNLRNHIDLETVGEMIKLIDSARSIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVGET 82
Query: 213 I 213
+
Sbjct: 83 V 83
>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
pdb|3TFW|B Chain B, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
Length = 248
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNV 167
LT+ K++L+IG+ GY T A + G+++ +E Q A N+
Sbjct: 60 RLTQAKRILEIGTLGGYSTIWXARELPADGQLLTLEADAHHAQVARENL 108
>pdb|2NNW|B Chain B, Alternative Conformations Of Nop56/58-fibrillarin Complex
And Implication For Induced-fit Assenly Of Box C/d Rnps
pdb|2NNW|D Chain D, Alternative Conformations Of Nop56/58-fibrillarin Complex
And Implication For Induced-fit Assenly Of Box C/d Rnps
pdb|3NMU|F Chain F, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NMU|J Chain J, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NVK|I Chain I, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
pdb|3NVK|J Chain J, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
pdb|3NVM|B Chain B, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
Length = 234
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 123 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQ 161
GK VL +G +G + ++ VG GK+ GIE P++++
Sbjct: 81 GKSVLYLGIASGTTASHVSDIVGWEGKIYGIEFSPRVLR 119
>pdb|1PRY|A Chain A, Structure Determination Of Fibrillarin Homologue From
Hyperthermophilic Archaeon Pyrococcus Furiosus
(Pfu-65527)
Length = 227
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 123 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQ 161
GK VL +G +G + ++ VG GK+ GIE P++++
Sbjct: 74 GKSVLYLGIASGTTASHVSDIVGWEGKIYGIEFSPRVLR 112
>pdb|1VJ1|A Chain A, Crystal Structure Of Putative Nadph-Dependent
Oxidoreductase From Mus Musculus At 2.10 A Resolution
Length = 363
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Query: 81 RGHYTTWRPYANCITNIGYGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALL 140
R Y + PY C N G AP+Q A V D + E K + G+ +
Sbjct: 54 RTLYLSVDPYXRCKXNEDTGTDYLAPWQLAQVADGGGIGIVEESKHQKLAKGDFVTSFYW 113
Query: 141 AWCVGKTGKVIGIEHI-PQLV 160
W G+E + PQLV
Sbjct: 114 PWQTKAILDGNGLEKVDPQLV 134
>pdb|3D2L|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|C Chain C, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|D Chain D, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
Length = 243
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 118 EELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKD 177
E++ GK++ DIG G G T LLA +V G++ + ++ A N
Sbjct: 29 EQVEPGKRIADIGCGTGTATLLLA----DHYEVTGVDLSEEXLEIAQEKAXETN------ 78
Query: 178 GRIKFVLGDGRKGYLDEAPYDIIHV 202
+ F + D R+ L E P D I +
Sbjct: 79 RHVDFWVQDXRELELPE-PVDAITI 102
>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUL|B Chain B, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUW|A Chain A, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
pdb|3DUW|B Chain B, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
Length = 223
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 101 AHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLV 160
AH +P Q + L ++ + +L+IG+ GY T LA + G+V+ +E +
Sbjct: 39 AHDVSPTQGKFL--QLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHA 96
Query: 161 QRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEA--PYDIIHVGGSIEDIP 210
A N+ N + R L D + +E P+D I + ++ P
Sbjct: 97 DIARSNIERANLNDRVEVRTGLAL-DSLQQIENEKYEPFDFIFIDADKQNNP 147
>pdb|1YB2|A Chain A, Structure Of A Putative Methyltransferase From
Thermoplasma Acidophilum
Length = 275
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR 179
L G +L++G G+G ++ + + + G + +E +++A N+ EF G
Sbjct: 108 LRPGXDILEVGVGSGNXSSYILYALNGKGTLTVVERDEDNLKKAXDNL----SEFYDIGN 163
Query: 180 IKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
++ D ++ + YD + I DIP+
Sbjct: 164 VRTSRSD-IADFISDQXYDAV-----IADIPD 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,256,210
Number of Sequences: 62578
Number of extensions: 321192
Number of successful extensions: 930
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 889
Number of HSP's gapped (non-prelim): 64
length of query: 213
length of database: 14,973,337
effective HSP length: 95
effective length of query: 118
effective length of database: 9,028,427
effective search space: 1065354386
effective search space used: 1065354386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)