Query psy7826
Match_columns 213
No_of_seqs 255 out of 3468
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 19:52:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7826.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7826hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01135 PCMT: Protein-L-isoas 100.0 3.1E-28 6.8E-33 191.9 11.6 153 53-212 1-157 (209)
2 COG2518 Pcm Protein-L-isoaspar 100.0 3E-27 6.4E-32 183.5 15.6 148 55-213 4-155 (209)
3 PRK13942 protein-L-isoaspartat 99.9 2.2E-25 4.8E-30 176.9 17.2 152 53-211 5-160 (212)
4 PRK13944 protein-L-isoaspartat 99.9 1.3E-24 2.9E-29 171.6 16.6 153 54-212 2-158 (205)
5 TIGR00080 pimt protein-L-isoas 99.9 2.5E-24 5.5E-29 171.2 16.9 154 51-211 4-161 (215)
6 PRK00312 pcm protein-L-isoaspa 99.9 1.8E-21 4E-26 154.4 16.3 150 51-211 6-159 (212)
7 KOG1661|consensus 99.9 9.1E-22 2E-26 151.1 11.9 166 47-212 3-178 (237)
8 PRK13943 protein-L-isoaspartat 99.8 4.7E-20 1E-24 154.1 15.6 149 54-211 7-164 (322)
9 PRK14903 16S rRNA methyltransf 99.8 3E-20 6.6E-25 161.6 13.0 171 7-207 140-318 (431)
10 PRK14901 16S rRNA methyltransf 99.8 4.6E-20 9.9E-25 160.9 12.5 170 8-207 156-336 (434)
11 PRK14904 16S rRNA methyltransf 99.8 2.3E-18 5E-23 150.6 13.3 167 8-206 158-328 (445)
12 PRK14902 16S rRNA methyltransf 99.8 3.8E-18 8.2E-23 149.3 13.4 170 8-207 156-331 (444)
13 PRK11933 yebU rRNA (cytosine-C 99.8 3.4E-18 7.4E-23 149.3 12.6 172 8-207 11-194 (470)
14 PRK10901 16S rRNA methyltransf 99.8 1.7E-17 3.6E-22 144.6 14.3 167 8-207 150-324 (427)
15 TIGR00563 rsmB ribosomal RNA s 99.8 1.5E-17 3.4E-22 144.7 13.8 168 9-207 145-320 (426)
16 COG0144 Sun tRNA and rRNA cyto 99.7 1E-16 2.3E-21 136.1 12.7 172 7-208 60-241 (355)
17 TIGR00446 nop2p NOL1/NOP2/sun 99.7 6.9E-16 1.5E-20 126.4 13.6 149 45-207 1-151 (264)
18 PF01189 Nol1_Nop2_Fmu: NOL1/N 99.7 1.5E-16 3.3E-21 131.3 7.2 158 21-208 1-168 (283)
19 COG2226 UbiE Methylase involve 99.6 3.1E-15 6.7E-20 119.6 11.0 87 120-212 49-135 (238)
20 PF01209 Ubie_methyltran: ubiE 99.6 2.3E-15 5E-20 120.9 10.1 93 112-211 39-131 (233)
21 COG2242 CobL Precorrin-6B meth 99.6 1.1E-14 2.4E-19 111.2 11.9 101 101-210 15-115 (187)
22 PF13847 Methyltransf_31: Meth 99.6 2.3E-14 5E-19 107.8 10.8 85 121-211 2-88 (152)
23 PF12847 Methyltransf_18: Meth 99.6 3.6E-14 7.8E-19 101.0 11.1 82 122-209 1-84 (112)
24 TIGR02752 MenG_heptapren 2-hep 99.5 1.3E-13 2.8E-18 110.6 12.6 96 110-212 35-130 (231)
25 PLN02233 ubiquinone biosynthes 99.5 2.1E-13 4.5E-18 111.6 12.3 90 119-212 70-161 (261)
26 PLN02244 tocopherol O-methyltr 99.5 3.7E-13 8.1E-18 114.1 13.0 85 121-211 117-201 (340)
27 COG2890 HemK Methylase of poly 99.5 7.8E-13 1.7E-17 109.0 13.1 114 87-211 75-189 (280)
28 COG2230 Cfa Cyclopropane fatty 99.5 3.4E-13 7.3E-18 109.9 10.5 91 110-211 62-152 (283)
29 PRK11088 rrmA 23S rRNA methylt 99.5 6.4E-13 1.4E-17 109.3 12.2 131 26-207 29-162 (272)
30 TIGR03587 Pse_Me-ase pseudamin 99.5 7.1E-13 1.5E-17 104.6 11.0 81 119-211 40-120 (204)
31 PRK08287 cobalt-precorrin-6Y C 99.5 1.3E-12 2.7E-17 101.8 12.1 96 103-208 14-109 (187)
32 COG2519 GCD14 tRNA(1-methylade 99.5 6.6E-13 1.4E-17 105.8 10.4 99 99-204 73-171 (256)
33 PF02353 CMAS: Mycolic acid cy 99.4 7E-13 1.5E-17 108.9 9.9 91 110-211 52-142 (273)
34 PF05175 MTS: Methyltransferas 99.4 3.1E-12 6.7E-17 98.2 12.8 89 110-207 21-109 (170)
35 TIGR02469 CbiT precorrin-6Y C5 99.4 3.3E-12 7.2E-17 92.1 12.1 95 106-208 5-100 (124)
36 PF08704 GCD14: tRNA methyltra 99.4 2.8E-12 6.1E-17 103.4 12.6 102 98-205 18-122 (247)
37 PRK00377 cbiT cobalt-precorrin 99.4 1.1E-12 2.5E-17 103.0 9.8 98 103-206 23-121 (198)
38 PRK00107 gidB 16S rRNA methylt 99.4 1.8E-12 3.8E-17 100.9 10.6 78 120-204 43-120 (187)
39 TIGR03533 L3_gln_methyl protei 99.4 3.1E-12 6.7E-17 105.9 12.2 113 87-205 84-198 (284)
40 PRK11873 arsM arsenite S-adeno 99.4 2.2E-12 4.8E-17 106.1 11.2 88 119-211 74-161 (272)
41 TIGR00138 gidB 16S rRNA methyl 99.4 8.7E-13 1.9E-17 102.2 8.3 80 122-209 42-121 (181)
42 COG2227 UbiG 2-polyprenyl-3-me 99.4 2.4E-13 5.2E-18 107.5 4.8 83 121-212 58-140 (243)
43 COG4106 Tam Trans-aconitate me 99.4 5E-13 1.1E-17 103.7 6.3 80 120-211 28-107 (257)
44 KOG1122|consensus 99.4 5.5E-13 1.2E-17 112.4 7.1 164 15-208 151-324 (460)
45 PRK15451 tRNA cmo(5)U34 methyl 99.4 3.1E-12 6.6E-17 103.9 11.2 86 120-211 54-140 (247)
46 PF13649 Methyltransf_25: Meth 99.4 8.3E-13 1.8E-17 92.5 6.8 80 126-211 1-83 (101)
47 PRK14103 trans-aconitate 2-met 99.4 1.7E-12 3.7E-17 105.8 9.5 85 111-211 20-104 (255)
48 PRK11207 tellurite resistance 99.4 3.6E-12 7.9E-17 100.1 10.6 90 111-211 21-110 (197)
49 PRK14966 unknown domain/N5-glu 99.4 8E-12 1.7E-16 107.2 13.1 111 87-205 217-328 (423)
50 PRK01683 trans-aconitate 2-met 99.4 5.4E-12 1.2E-16 102.9 11.2 88 111-212 22-109 (258)
51 PLN02396 hexaprenyldihydroxybe 99.4 1.7E-12 3.7E-17 108.8 8.1 85 121-212 130-214 (322)
52 PRK11036 putative S-adenosyl-L 99.4 3.3E-12 7.3E-17 104.1 9.1 85 121-212 43-128 (255)
53 PRK11805 N5-glutamine S-adenos 99.4 9.3E-12 2E-16 104.0 11.5 112 87-204 96-209 (307)
54 COG2264 PrmA Ribosomal protein 99.3 9E-12 2E-16 102.4 10.3 88 109-204 149-237 (300)
55 TIGR00740 methyltransferase, p 99.3 2.3E-11 4.9E-16 98.2 12.4 86 120-211 51-137 (239)
56 TIGR00536 hemK_fam HemK family 99.3 1.5E-11 3.3E-16 101.8 11.3 111 88-204 78-190 (284)
57 TIGR02021 BchM-ChlM magnesium 99.3 1.8E-11 3.9E-16 97.6 11.2 92 110-211 43-134 (219)
58 PLN02781 Probable caffeoyl-CoA 99.3 5.9E-12 1.3E-16 101.4 8.5 93 110-207 57-155 (234)
59 COG4122 Predicted O-methyltran 99.3 2E-11 4.3E-16 96.5 11.0 96 111-211 49-147 (219)
60 PTZ00098 phosphoethanolamine N 99.3 1.5E-11 3.3E-16 100.7 10.8 90 110-210 42-131 (263)
61 PRK06202 hypothetical protein; 99.3 1.8E-11 3.8E-16 98.4 10.5 84 121-212 59-145 (232)
62 TIGR00477 tehB tellurite resis 99.3 2.3E-11 5.1E-16 95.3 10.5 90 110-211 20-109 (195)
63 PRK05785 hypothetical protein; 99.3 1.8E-11 4E-16 98.1 9.9 77 121-212 50-126 (226)
64 PLN02336 phosphoethanolamine N 99.3 2.4E-11 5.1E-16 107.5 11.5 91 112-212 258-348 (475)
65 PRK08317 hypothetical protein; 99.3 4.6E-11 9.9E-16 95.6 12.2 94 110-211 9-102 (241)
66 PRK01544 bifunctional N5-gluta 99.3 4.5E-11 9.8E-16 106.2 13.1 113 87-205 78-215 (506)
67 PF08241 Methyltransf_11: Meth 99.3 2E-11 4.3E-16 83.6 8.6 74 127-210 1-74 (95)
68 PRK07402 precorrin-6B methylas 99.3 5.2E-11 1.1E-15 93.3 12.0 95 102-204 22-117 (196)
69 PRK10258 biotin biosynthesis p 99.3 2.1E-11 4.5E-16 99.1 10.1 88 109-211 31-118 (251)
70 KOG2904|consensus 99.3 5.1E-11 1.1E-15 95.6 11.8 116 85-205 107-231 (328)
71 PF05401 NodS: Nodulation prot 99.3 3E-11 6.4E-16 93.2 9.9 79 122-211 43-121 (201)
72 TIGR03534 RF_mod_PrmC protein- 99.3 7.2E-11 1.6E-15 95.6 12.7 79 122-207 87-165 (251)
73 PRK00121 trmB tRNA (guanine-N( 99.3 2.6E-11 5.6E-16 95.6 9.7 80 121-206 39-121 (202)
74 PF06325 PrmA: Ribosomal prote 99.3 3E-11 6.5E-16 99.9 10.0 88 107-204 146-233 (295)
75 PF03848 TehB: Tellurite resis 99.3 4.7E-11 1E-15 92.7 10.4 91 110-212 20-110 (192)
76 PRK00216 ubiE ubiquinone/menaq 99.3 1.3E-10 2.8E-15 93.2 13.0 95 111-211 42-136 (239)
77 PF01596 Methyltransf_3: O-met 99.3 1.1E-11 2.4E-16 97.6 6.5 96 109-209 33-134 (205)
78 PRK07580 Mg-protoporphyrin IX 99.3 7.8E-11 1.7E-15 94.3 11.4 92 110-211 50-142 (230)
79 PLN02476 O-methyltransferase 99.3 2.4E-11 5.2E-16 99.5 8.4 95 110-209 107-207 (278)
80 COG2813 RsmC 16S RNA G1207 met 99.3 6.5E-11 1.4E-15 97.0 10.9 88 110-207 148-235 (300)
81 PRK15001 SAM-dependent 23S rib 99.2 6.8E-11 1.5E-15 101.0 11.4 93 110-208 218-310 (378)
82 PLN02585 magnesium protoporphy 99.2 8.4E-11 1.8E-15 98.4 11.6 97 109-211 130-227 (315)
83 COG4123 Predicted O-methyltran 99.2 4.6E-11 1E-15 95.8 9.5 93 110-208 33-127 (248)
84 PF13659 Methyltransf_26: Meth 99.2 2.7E-11 5.8E-16 86.8 7.5 80 123-208 1-82 (117)
85 smart00650 rADc Ribosomal RNA 99.2 7.3E-11 1.6E-15 90.4 10.3 85 111-207 4-88 (169)
86 PRK12335 tellurite resistance 99.2 5.2E-11 1.1E-15 98.8 10.1 80 122-211 120-199 (287)
87 KOG1540|consensus 99.2 8.3E-11 1.8E-15 93.6 10.7 97 112-212 92-193 (296)
88 TIGR00537 hemK_rel_arch HemK-r 99.2 1.1E-10 2.5E-15 90.1 11.4 81 120-211 17-97 (179)
89 TIGR02072 BioC biotin biosynth 99.2 7.2E-11 1.6E-15 94.6 10.5 92 110-211 21-113 (240)
90 COG2263 Predicted RNA methylas 99.2 2.1E-10 4.6E-15 87.6 12.3 95 101-206 23-118 (198)
91 smart00828 PKS_MT Methyltransf 99.2 5.3E-11 1.2E-15 95.0 9.5 82 124-211 1-82 (224)
92 PRK15068 tRNA mo(5)U34 methylt 99.2 8.6E-11 1.9E-15 98.9 11.0 86 120-212 120-205 (322)
93 PRK04266 fibrillarin; Provisio 99.2 1.2E-10 2.5E-15 93.3 11.2 79 119-205 69-150 (226)
94 PRK09328 N5-glutamine S-adenos 99.2 1.2E-10 2.7E-15 95.7 11.6 109 90-205 75-184 (275)
95 PF08242 Methyltransf_12: Meth 99.2 3.1E-12 6.6E-17 89.2 1.4 79 127-211 1-81 (99)
96 PRK13168 rumA 23S rRNA m(5)U19 99.2 1.1E-10 2.4E-15 102.4 11.2 79 120-206 295-377 (443)
97 PRK14967 putative methyltransf 99.2 3E-10 6.5E-15 90.8 12.5 77 120-205 34-110 (223)
98 TIGR00091 tRNA (guanine-N(7)-) 99.2 7E-11 1.5E-15 92.5 8.4 81 122-208 16-99 (194)
99 TIGR00406 prmA ribosomal prote 99.2 2.8E-10 6E-15 94.5 11.9 90 110-207 147-236 (288)
100 PF07021 MetW: Methionine bios 99.2 4.5E-11 9.8E-16 92.0 6.5 78 120-211 11-90 (193)
101 PTZ00146 fibrillarin; Provisio 99.2 1.5E-10 3.2E-15 95.2 9.8 80 119-205 129-211 (293)
102 TIGR03704 PrmC_rel_meth putati 99.2 3.3E-10 7.1E-15 92.2 11.7 111 87-206 49-163 (251)
103 PLN02672 methionine S-methyltr 99.2 2.8E-10 6.1E-15 107.6 12.8 115 89-205 83-212 (1082)
104 TIGR01177 conserved hypothetic 99.2 3.7E-10 7.9E-15 95.5 12.2 93 104-206 166-258 (329)
105 PRK03522 rumB 23S rRNA methylu 99.2 1.5E-10 3.2E-15 97.3 9.8 76 122-205 173-249 (315)
106 PLN02490 MPBQ/MSBQ methyltrans 99.2 1.9E-10 4.2E-15 97.0 10.4 82 121-211 112-193 (340)
107 PLN03075 nicotianamine synthas 99.2 4.8E-10 1E-14 92.5 12.4 84 121-209 122-207 (296)
108 PRK10909 rsmD 16S rRNA m(2)G96 99.2 3.8E-10 8.3E-15 88.5 11.3 92 106-205 38-130 (199)
109 PRK09489 rsmC 16S ribosomal RN 99.2 3.5E-10 7.5E-15 95.8 11.7 88 110-208 186-273 (342)
110 TIGR00452 methyltransferase, p 99.2 2.7E-10 5.8E-15 95.3 10.8 86 120-212 119-204 (314)
111 PTZ00338 dimethyladenosine tra 99.2 3.5E-10 7.6E-15 93.9 11.3 93 103-206 19-111 (294)
112 PHA03411 putative methyltransf 99.2 5.1E-10 1.1E-14 91.2 11.9 80 120-211 62-141 (279)
113 PRK11705 cyclopropane fatty ac 99.2 3.7E-10 8.1E-15 97.1 11.4 86 111-211 158-243 (383)
114 PRK00517 prmA ribosomal protei 99.2 3.9E-10 8.4E-15 91.7 11.0 82 110-205 107-188 (250)
115 TIGR02081 metW methionine bios 99.1 1.8E-10 3.9E-15 90.1 8.5 79 120-212 11-91 (194)
116 PLN02589 caffeoyl-CoA O-methyl 99.1 1.3E-10 2.8E-15 94.0 7.5 96 110-210 68-170 (247)
117 PRK00274 ksgA 16S ribosomal RN 99.1 5.4E-10 1.2E-14 92.0 10.7 91 102-205 24-114 (272)
118 TIGR01934 MenG_MenH_UbiE ubiqu 99.1 9.4E-10 2E-14 87.3 11.7 91 112-211 31-121 (223)
119 PRK14896 ksgA 16S ribosomal RN 99.1 8.6E-10 1.9E-14 90.1 11.7 91 102-206 11-101 (258)
120 KOG2915|consensus 99.1 3.2E-10 7E-15 91.0 8.8 109 94-208 79-189 (314)
121 TIGR03840 TMPT_Se_Te thiopurin 99.1 9.3E-10 2E-14 87.4 10.8 89 121-212 33-129 (213)
122 PRK11188 rrmJ 23S rRNA methylt 99.1 4.4E-10 9.5E-15 89.0 8.8 74 120-209 49-130 (209)
123 PRK14121 tRNA (guanine-N(7)-)- 99.1 9.2E-10 2E-14 94.0 11.3 89 112-208 114-204 (390)
124 KOG1270|consensus 99.1 7.5E-11 1.6E-15 94.3 4.2 80 123-211 90-173 (282)
125 PRK06922 hypothetical protein; 99.1 6.2E-10 1.4E-14 99.9 10.4 83 120-209 416-500 (677)
126 KOG3420|consensus 99.1 3E-10 6.6E-15 83.0 6.5 102 97-206 21-124 (185)
127 TIGR00479 rumA 23S rRNA (uraci 99.1 6E-10 1.3E-14 97.4 9.7 78 120-205 290-371 (431)
128 TIGR02716 C20_methyl_CrtF C-20 99.1 1.6E-09 3.5E-14 90.6 11.8 85 119-211 146-230 (306)
129 PHA03412 putative methyltransf 99.1 1.6E-09 3.6E-14 86.4 11.1 95 99-208 30-126 (241)
130 PRK14968 putative methyltransf 99.1 3.8E-09 8.2E-14 81.7 12.5 85 111-206 14-100 (188)
131 PRK00050 16S rRNA m(4)C1402 me 99.1 9.5E-10 2.1E-14 91.0 9.2 93 108-209 7-103 (296)
132 TIGR02085 meth_trns_rumB 23S r 99.1 1.2E-09 2.5E-14 93.9 10.1 97 101-205 210-309 (374)
133 PRK04457 spermidine synthase; 99.0 1.9E-09 4E-14 88.3 10.4 80 120-204 64-144 (262)
134 smart00138 MeTrc Methyltransfe 99.0 1.2E-09 2.6E-14 89.5 9.3 90 122-211 99-218 (264)
135 PLN02336 phosphoethanolamine N 99.0 1.1E-09 2.4E-14 96.9 9.6 90 110-211 27-118 (475)
136 TIGR00755 ksgA dimethyladenosi 99.0 3.6E-09 7.7E-14 86.2 10.9 90 102-205 11-103 (253)
137 PRK15128 23S rRNA m(5)C1962 me 99.0 2.1E-09 4.6E-14 92.7 9.4 79 121-205 219-302 (396)
138 TIGR03438 probable methyltrans 99.0 5E-09 1.1E-13 87.5 11.3 89 119-211 60-153 (301)
139 PRK05031 tRNA (uracil-5-)-meth 99.0 2.5E-09 5.4E-14 91.5 9.4 97 101-205 184-297 (362)
140 KOG1541|consensus 99.0 2.2E-09 4.7E-14 83.9 7.8 92 103-209 31-125 (270)
141 KOG1271|consensus 99.0 3.8E-09 8.2E-14 80.3 8.6 79 124-207 69-147 (227)
142 PRK13255 thiopurine S-methyltr 99.0 6.3E-09 1.4E-13 82.9 10.3 86 120-211 35-131 (218)
143 TIGR02143 trmA_only tRNA (urac 99.0 4.8E-09 1E-13 89.4 9.8 95 103-205 177-288 (353)
144 PF01170 UPF0020: Putative RNA 98.9 7.7E-09 1.7E-13 80.0 9.8 96 104-206 12-116 (179)
145 PF09445 Methyltransf_15: RNA 98.9 1.6E-09 3.4E-14 82.0 5.8 77 124-207 1-80 (163)
146 PF13489 Methyltransf_23: Meth 98.9 4E-09 8.7E-14 79.3 8.0 74 120-211 20-93 (161)
147 TIGR00438 rrmJ cell division p 98.9 4.1E-09 9E-14 82.0 8.1 72 119-206 29-108 (188)
148 PRK05134 bifunctional 3-demeth 98.9 9.4E-09 2E-13 82.5 10.3 83 120-211 46-129 (233)
149 PRK00811 spermidine synthase; 98.9 7.3E-09 1.6E-13 85.8 9.7 87 121-208 75-162 (283)
150 TIGR01983 UbiG ubiquinone bios 98.9 5E-09 1.1E-13 83.5 8.2 82 122-211 45-127 (224)
151 TIGR00095 RNA methyltransferas 98.9 2.2E-08 4.7E-13 78.1 11.4 90 110-206 38-131 (189)
152 PRK11783 rlmL 23S rRNA m(2)G24 98.9 4E-09 8.7E-14 97.3 8.4 79 121-205 537-617 (702)
153 PF02475 Met_10: Met-10+ like- 98.9 7.7E-09 1.7E-13 81.1 8.8 81 119-205 98-178 (200)
154 PRK11727 23S rRNA mA1618 methy 98.9 1.2E-08 2.5E-13 85.5 10.0 81 122-207 114-200 (321)
155 COG2265 TrmA SAM-dependent met 98.9 7.6E-09 1.7E-13 90.0 9.2 98 100-205 269-371 (432)
156 PF08003 Methyltransf_9: Prote 98.9 4.3E-08 9.3E-13 80.6 12.5 86 121-213 114-199 (315)
157 PRK13256 thiopurine S-methyltr 98.9 2E-08 4.4E-13 80.1 9.9 103 104-212 28-140 (226)
158 cd02440 AdoMet_MTases S-adenos 98.8 3.1E-08 6.7E-13 67.8 8.2 77 125-208 1-78 (107)
159 COG0030 KsgA Dimethyladenosine 98.8 5.9E-08 1.3E-12 78.6 10.5 91 103-205 13-104 (259)
160 PF05958 tRNA_U5-meth_tr: tRNA 98.8 2.4E-08 5.2E-13 85.1 8.3 97 100-205 173-287 (352)
161 PRK04148 hypothetical protein; 98.8 5E-08 1.1E-12 71.3 8.2 74 122-210 16-91 (134)
162 KOG3191|consensus 98.7 1.4E-07 3.1E-12 71.7 10.6 76 123-205 44-119 (209)
163 KOG1499|consensus 98.7 4.2E-08 9E-13 81.7 8.1 79 120-205 58-136 (346)
164 PLN02366 spermidine synthase 98.7 1.1E-07 2.3E-12 79.6 10.5 86 121-208 90-177 (308)
165 KOG0820|consensus 98.7 1.6E-07 3.5E-12 75.7 10.7 97 99-206 36-133 (315)
166 COG0220 Predicted S-adenosylme 98.7 8.1E-08 1.8E-12 76.7 8.6 79 124-208 50-131 (227)
167 PF02390 Methyltransf_4: Putat 98.7 7.3E-08 1.6E-12 75.5 8.1 80 122-207 17-99 (195)
168 PF03602 Cons_hypoth95: Conser 98.7 4E-08 8.7E-13 76.2 6.1 98 104-207 24-125 (183)
169 PRK04338 N(2),N(2)-dimethylgua 98.7 1E-07 2.3E-12 81.9 9.2 77 122-204 57-133 (382)
170 COG3963 Phospholipid N-methylt 98.7 1.6E-07 3.5E-12 70.5 8.6 93 107-211 35-132 (194)
171 PRK01581 speE spermidine synth 98.6 1.6E-07 3.4E-12 79.5 9.1 84 121-205 149-235 (374)
172 TIGR00417 speE spermidine synt 98.6 2.3E-07 4.9E-12 76.4 9.8 83 122-206 72-155 (270)
173 PF05724 TPMT: Thiopurine S-me 98.6 2.2E-07 4.7E-12 74.1 8.7 104 103-212 21-132 (218)
174 KOG2187|consensus 98.6 4.6E-08 9.9E-13 85.0 5.0 71 109-189 372-442 (534)
175 PRK03612 spermidine synthase; 98.6 2.2E-07 4.7E-12 83.2 9.4 87 121-208 296-385 (521)
176 COG0742 N6-adenine-specific me 98.6 1E-06 2.2E-11 67.9 11.5 99 103-207 24-125 (187)
177 COG2520 Predicted methyltransf 98.6 2.1E-07 4.6E-12 78.2 8.2 81 120-206 186-266 (341)
178 TIGR00006 S-adenosyl-methyltra 98.6 5.9E-07 1.3E-11 74.6 9.9 95 106-209 6-105 (305)
179 KOG4300|consensus 98.5 1E-07 2.3E-12 73.9 4.9 82 124-212 78-161 (252)
180 COG1092 Predicted SAM-dependen 98.5 2.5E-07 5.5E-12 79.3 7.8 79 122-205 217-299 (393)
181 COG4976 Predicted methyltransf 98.5 1.3E-08 2.9E-13 80.0 -0.3 90 105-209 110-201 (287)
182 PF02384 N6_Mtase: N-6 DNA Met 98.5 6.1E-07 1.3E-11 75.2 9.1 103 100-207 26-136 (311)
183 PF10294 Methyltransf_16: Puta 98.5 6.3E-07 1.4E-11 68.9 8.4 85 119-207 42-130 (173)
184 KOG1500|consensus 98.5 6.1E-07 1.3E-11 74.4 8.3 76 121-204 176-251 (517)
185 COG1041 Predicted DNA modifica 98.5 8.4E-07 1.8E-11 74.3 9.0 93 104-206 181-274 (347)
186 PF00398 RrnaAD: Ribosomal RNA 98.5 1.6E-06 3.4E-11 71.1 10.0 91 102-204 12-105 (262)
187 PF10672 Methyltrans_SAM: S-ad 98.5 7E-07 1.5E-11 73.7 7.9 96 100-205 106-204 (286)
188 KOG1663|consensus 98.5 2.3E-06 4.9E-11 67.6 10.2 89 112-205 64-158 (237)
189 PF04816 DUF633: Family of unk 98.4 8E-07 1.7E-11 70.1 7.5 75 126-205 1-75 (205)
190 PF05185 PRMT5: PRMT5 arginine 98.4 1.3E-06 2.9E-11 76.5 9.6 77 123-204 187-266 (448)
191 TIGR00478 tly hemolysin TlyA f 98.4 5.3E-07 1.2E-11 72.2 6.3 40 121-162 74-113 (228)
192 COG0293 FtsJ 23S rRNA methylas 98.4 5.6E-07 1.2E-11 70.3 6.2 71 120-206 43-121 (205)
193 COG0116 Predicted N6-adenine-s 98.4 1.8E-05 4E-10 67.3 15.4 97 103-206 174-309 (381)
194 TIGR01444 fkbM_fam methyltrans 98.4 1.8E-06 3.8E-11 63.9 7.6 58 125-188 1-58 (143)
195 KOG2730|consensus 98.3 3.3E-07 7.2E-12 71.7 3.3 78 122-206 94-175 (263)
196 PF00891 Methyltransf_2: O-met 98.3 4.3E-06 9.3E-11 67.5 9.6 77 119-211 97-173 (241)
197 KOG3010|consensus 98.3 8E-07 1.7E-11 70.6 5.0 84 120-210 30-114 (261)
198 PRK10742 putative methyltransf 98.3 3.8E-06 8.3E-11 67.6 8.5 93 112-209 78-177 (250)
199 PRK11783 rlmL 23S rRNA m(2)G24 98.3 9.3E-06 2E-10 75.3 12.2 96 105-206 174-313 (702)
200 KOG2899|consensus 98.3 2E-06 4.4E-11 68.3 6.6 50 119-169 55-104 (288)
201 TIGR02987 met_A_Alw26 type II 98.3 8.6E-06 1.9E-10 73.1 11.2 106 99-209 3-125 (524)
202 KOG2198|consensus 98.3 4.2E-06 9.1E-11 70.4 8.1 92 112-208 145-248 (375)
203 PLN02823 spermine synthase 98.3 7.2E-06 1.6E-10 69.4 9.7 82 122-205 103-185 (336)
204 PF03291 Pox_MCEL: mRNA cappin 98.3 5.4E-06 1.2E-10 70.0 8.7 86 122-209 62-158 (331)
205 KOG2360|consensus 98.2 3.7E-06 8E-11 70.9 7.1 150 44-207 133-295 (413)
206 COG2384 Predicted SAM-dependen 98.2 1.1E-05 2.4E-10 63.4 8.9 81 120-205 14-94 (226)
207 PRK11760 putative 23S rRNA C24 98.2 7.9E-06 1.7E-10 68.6 8.4 72 120-206 209-280 (357)
208 TIGR00308 TRM1 tRNA(guanine-26 98.2 3.8E-06 8.2E-11 72.1 6.7 76 124-204 46-122 (374)
209 PF13679 Methyltransf_32: Meth 98.2 1.4E-05 3E-10 59.4 8.8 82 121-205 24-108 (141)
210 COG4076 Predicted RNA methylas 98.2 3.9E-06 8.4E-11 64.4 5.7 69 124-202 34-102 (252)
211 PRK01544 bifunctional N5-gluta 98.2 1E-05 2.2E-10 72.3 9.1 81 122-208 347-429 (506)
212 PF01269 Fibrillarin: Fibrilla 98.2 2.7E-05 5.9E-10 61.5 10.3 81 119-206 70-153 (229)
213 PF02527 GidB: rRNA small subu 98.2 1.3E-05 2.7E-10 62.2 8.4 74 125-205 51-124 (184)
214 PF06080 DUF938: Protein of un 98.1 1.7E-05 3.8E-10 62.0 7.7 93 112-210 14-116 (204)
215 COG0275 Predicted S-adenosylme 98.0 6.3E-05 1.4E-09 61.9 10.2 94 108-209 11-109 (314)
216 PF01728 FtsJ: FtsJ-like methy 98.0 3.5E-06 7.5E-11 65.1 2.7 70 122-207 23-102 (181)
217 COG0357 GidB Predicted S-adeno 98.0 2.9E-05 6.4E-10 61.4 7.3 76 123-205 68-144 (215)
218 KOG2361|consensus 97.9 9.6E-06 2.1E-10 64.5 3.8 80 125-211 74-159 (264)
219 PF01795 Methyltransf_5: MraW 97.9 2.8E-05 6E-10 64.8 6.6 92 108-208 8-105 (310)
220 COG0421 SpeE Spermidine syntha 97.9 6.2E-05 1.3E-09 62.2 8.7 85 120-207 75-160 (282)
221 PF09243 Rsm22: Mitochondrial 97.9 4.6E-05 9.9E-10 62.9 7.7 85 122-211 33-117 (274)
222 COG2521 Predicted archaeal met 97.9 9.2E-06 2E-10 64.4 3.1 80 120-204 132-213 (287)
223 PF05891 Methyltransf_PK: AdoM 97.9 2E-05 4.4E-10 62.1 4.8 82 123-211 56-137 (218)
224 PF12147 Methyltransf_20: Puta 97.9 0.00043 9.3E-09 56.9 12.2 86 122-211 135-224 (311)
225 COG3897 Predicted methyltransf 97.9 2.7E-05 5.8E-10 60.2 4.9 76 121-207 78-153 (218)
226 TIGR03439 methyl_EasF probable 97.8 0.00019 4.2E-09 60.3 10.3 88 119-211 73-172 (319)
227 PF01564 Spermine_synth: Sperm 97.8 5.7E-05 1.2E-09 61.3 6.7 84 121-206 75-160 (246)
228 PLN02232 ubiquinone biosynthes 97.8 4.3E-05 9.3E-10 57.9 5.6 60 151-212 1-60 (160)
229 PF08123 DOT1: Histone methyla 97.8 0.00015 3.2E-09 57.2 8.3 95 106-206 28-132 (205)
230 PF05971 Methyltransf_10: Prot 97.7 0.00022 4.9E-09 59.1 9.0 82 123-210 103-191 (299)
231 PRK10611 chemotaxis methyltran 97.7 0.00034 7.4E-09 58.0 9.6 89 123-211 116-238 (287)
232 KOG1975|consensus 97.7 9.5E-05 2.1E-09 61.3 5.7 87 120-208 115-208 (389)
233 COG0286 HsdM Type I restrictio 97.6 0.00041 9E-09 61.8 9.8 101 100-206 166-274 (489)
234 KOG2940|consensus 97.6 0.00013 2.8E-09 57.9 5.4 82 121-211 71-152 (325)
235 PF05219 DREV: DREV methyltran 97.5 0.00018 3.9E-09 58.2 5.4 71 122-209 94-164 (265)
236 KOG4589|consensus 97.5 0.00015 3.3E-09 55.7 4.7 71 120-206 67-146 (232)
237 PF13578 Methyltransf_24: Meth 97.5 1.5E-05 3.3E-10 55.9 -1.0 74 127-205 1-78 (106)
238 COG1889 NOP1 Fibrillarin-like 97.5 0.00082 1.8E-08 52.4 8.0 80 119-206 73-155 (231)
239 PF07091 FmrO: Ribosomal RNA m 97.4 0.00097 2.1E-08 53.7 8.6 80 120-207 103-182 (251)
240 PF04445 SAM_MT: Putative SAM- 97.4 0.00047 1E-08 55.2 6.7 92 112-208 65-163 (234)
241 PRK00536 speE spermidine synth 97.3 0.0023 4.9E-08 52.4 9.8 78 121-205 71-148 (262)
242 PHA01634 hypothetical protein 97.3 0.0017 3.6E-08 47.0 7.8 73 122-204 28-100 (156)
243 PF11599 AviRa: RRNA methyltra 97.3 0.00038 8.3E-09 54.6 4.9 87 124-210 53-182 (246)
244 KOG1596|consensus 97.3 0.00036 7.8E-09 55.7 4.5 83 119-208 153-238 (317)
245 PF03059 NAS: Nicotianamine sy 97.3 0.001 2.2E-08 54.7 7.3 80 124-207 122-203 (276)
246 COG1189 Predicted rRNA methyla 97.1 0.0016 3.5E-08 52.0 6.2 76 121-208 78-156 (245)
247 PF01739 CheR: CheR methyltran 97.0 0.0019 4.1E-08 50.6 6.0 89 122-210 31-150 (196)
248 cd00315 Cyt_C5_DNA_methylase C 97.0 0.0032 6.9E-08 52.0 7.3 73 125-210 2-76 (275)
249 COG1352 CheR Methylase of chem 97.0 0.01 2.2E-07 48.8 10.0 88 123-210 97-216 (268)
250 KOG1269|consensus 96.9 0.0016 3.5E-08 55.7 5.2 88 119-212 107-194 (364)
251 COG0500 SmtA SAM-dependent met 96.9 0.013 2.8E-07 42.0 9.2 72 126-204 52-127 (257)
252 PF01861 DUF43: Protein of unk 96.8 0.022 4.8E-07 45.8 10.7 77 121-205 43-121 (243)
253 KOG2671|consensus 96.8 0.0018 3.9E-08 54.3 4.6 81 119-205 205-293 (421)
254 PF05148 Methyltransf_8: Hypot 96.8 0.0039 8.5E-08 49.0 6.2 73 110-207 61-133 (219)
255 COG4262 Predicted spermidine s 96.8 0.0076 1.7E-07 51.2 8.1 87 121-208 288-377 (508)
256 KOG1501|consensus 96.7 0.0042 9E-08 53.8 6.2 56 125-186 69-124 (636)
257 PF04989 CmcI: Cephalosporin h 96.7 0.0093 2E-07 46.9 7.6 60 123-188 33-95 (206)
258 KOG4058|consensus 96.4 0.0076 1.7E-07 44.8 5.0 91 110-210 62-152 (199)
259 KOG3178|consensus 96.3 0.01 2.2E-07 50.0 6.1 74 124-212 179-252 (342)
260 KOG3115|consensus 96.3 0.0057 1.2E-07 47.8 4.2 65 123-188 61-127 (249)
261 KOG1227|consensus 96.3 0.0017 3.7E-08 53.5 1.4 78 122-205 194-271 (351)
262 PF01555 N6_N4_Mtase: DNA meth 96.2 0.024 5.2E-07 44.6 7.4 43 120-165 189-231 (231)
263 KOG1098|consensus 96.2 0.0035 7.7E-08 56.3 2.8 71 120-206 42-120 (780)
264 PRK11524 putative methyltransf 96.2 0.025 5.5E-07 46.8 7.8 47 120-169 206-252 (284)
265 KOG1099|consensus 96.0 0.0057 1.2E-07 48.7 3.0 69 123-207 42-126 (294)
266 PF04672 Methyltransf_19: S-ad 96.0 0.032 7E-07 45.6 7.3 83 124-211 70-165 (267)
267 COG1565 Uncharacterized conser 95.9 0.079 1.7E-06 45.1 9.5 72 99-170 45-132 (370)
268 KOG1331|consensus 95.7 0.0058 1.3E-07 50.1 1.9 75 120-210 43-117 (293)
269 PF02005 TRM: N2,N2-dimethylgu 95.7 0.026 5.7E-07 48.7 6.0 79 122-204 49-129 (377)
270 PRK13699 putative methylase; P 95.6 0.07 1.5E-06 42.8 7.8 47 120-169 161-207 (227)
271 PF02636 Methyltransf_28: Puta 95.6 0.13 2.8E-06 41.8 9.3 78 124-210 20-109 (252)
272 KOG3045|consensus 95.5 0.05 1.1E-06 44.3 6.4 69 112-207 171-239 (325)
273 PF06962 rRNA_methylase: Putat 95.3 0.051 1.1E-06 40.1 5.5 53 149-205 1-55 (140)
274 KOG2651|consensus 95.3 0.078 1.7E-06 45.4 7.1 44 121-166 152-195 (476)
275 PF00145 DNA_methylase: C-5 cy 95.2 0.026 5.6E-07 47.1 4.1 72 125-210 2-75 (335)
276 PF11968 DUF3321: Putative met 95.1 0.039 8.4E-07 43.7 4.7 65 124-212 53-120 (219)
277 KOG0024|consensus 95.1 0.07 1.5E-06 44.7 6.3 46 119-165 166-212 (354)
278 KOG2782|consensus 95.1 0.013 2.8E-07 46.4 1.9 94 108-210 31-132 (303)
279 TIGR00675 dcm DNA-methyltransf 94.9 0.075 1.6E-06 44.8 6.2 72 126-210 1-73 (315)
280 PF03141 Methyltransf_29: Puta 94.9 0.026 5.6E-07 49.8 3.5 69 125-206 120-191 (506)
281 COG0270 Dcm Site-specific DNA 94.9 0.11 2.4E-06 43.9 7.2 75 124-210 4-81 (328)
282 COG1867 TRM1 N2,N2-dimethylgua 94.9 0.074 1.6E-06 45.3 5.9 75 123-203 53-128 (380)
283 COG3129 Predicted SAM-dependen 94.6 0.13 2.7E-06 41.3 6.3 82 122-208 78-165 (292)
284 KOG1709|consensus 94.2 0.54 1.2E-05 37.4 8.8 79 121-208 100-181 (271)
285 COG4798 Predicted methyltransf 93.9 0.14 3E-06 40.0 5.0 39 119-157 45-83 (238)
286 COG1064 AdhP Zn-dependent alco 93.8 0.33 7.2E-06 41.2 7.7 46 119-166 163-209 (339)
287 TIGR00497 hsdM type I restrict 93.8 0.61 1.3E-05 41.9 9.9 104 100-206 195-303 (501)
288 PRK10458 DNA cytosine methylas 93.6 0.45 9.7E-06 42.3 8.4 79 123-210 88-183 (467)
289 PF05050 Methyltransf_21: Meth 93.3 0.32 7E-06 36.1 6.3 39 128-166 1-42 (167)
290 COG1063 Tdh Threonine dehydrog 93.0 0.42 9.1E-06 40.8 7.2 47 120-167 166-213 (350)
291 KOG3987|consensus 92.9 0.031 6.7E-07 44.0 0.2 41 123-166 113-153 (288)
292 COG3510 CmcI Cephalosporin hyd 92.9 0.45 9.7E-06 37.1 6.4 72 106-189 55-129 (237)
293 COG1568 Predicted methyltransf 92.9 0.37 8E-06 39.7 6.2 76 122-204 152-229 (354)
294 KOG2078|consensus 92.7 0.1 2.2E-06 45.2 3.0 64 120-189 247-310 (495)
295 KOG2352|consensus 92.7 0.87 1.9E-05 40.3 8.7 84 119-210 44-128 (482)
296 PF07279 DUF1442: Protein of u 92.6 1.1 2.3E-05 35.6 8.2 82 121-207 40-126 (218)
297 PF07942 N2227: N2227-like pro 92.1 2.1 4.6E-05 35.2 9.9 41 123-166 57-97 (270)
298 PF05206 TRM13: Methyltransfer 92.1 0.72 1.6E-05 37.8 7.1 44 120-163 16-63 (259)
299 KOG3201|consensus 91.9 0.042 9.2E-07 41.5 -0.2 82 122-206 29-113 (201)
300 COG4301 Uncharacterized conser 91.6 2.1 4.7E-05 34.8 9.0 65 120-188 76-143 (321)
301 PF07757 AdoMet_MTase: Predict 91.4 0.38 8.1E-06 33.9 4.1 33 122-157 58-90 (112)
302 KOG1253|consensus 90.7 0.15 3.2E-06 45.0 1.9 81 120-204 107-191 (525)
303 KOG2793|consensus 90.3 1.5 3.3E-05 35.6 7.2 41 123-166 87-127 (248)
304 PRK08213 gluconate 5-dehydroge 89.8 3.2 6.9E-05 33.2 9.0 79 122-207 11-100 (259)
305 KOG2352|consensus 89.2 0.27 5.8E-06 43.4 2.3 79 121-205 294-379 (482)
306 PF03492 Methyltransf_7: SAM d 89.0 1.6 3.5E-05 37.1 6.9 90 122-211 16-122 (334)
307 PF02254 TrkA_N: TrkA-N domain 88.9 0.98 2.1E-05 31.6 4.7 62 131-204 4-70 (116)
308 PTZ00357 methyltransferase; Pr 88.7 2.6 5.7E-05 39.3 8.1 78 125-202 703-798 (1072)
309 PRK07904 short chain dehydroge 88.6 2.8 6.1E-05 33.7 7.8 82 120-207 5-98 (253)
310 KOG0822|consensus 88.5 1.6 3.4E-05 39.3 6.4 73 124-202 369-445 (649)
311 COG2933 Predicted SAM-dependen 88.4 1.8 3.9E-05 35.6 6.2 70 120-204 209-278 (358)
312 PRK08945 putative oxoacyl-(acy 87.6 5.1 0.00011 31.8 8.7 82 120-207 9-103 (247)
313 cd08283 FDH_like_1 Glutathione 87.2 1.9 4E-05 37.1 6.3 47 119-166 181-228 (386)
314 PRK06172 short chain dehydroge 87.1 6.6 0.00014 31.2 9.1 79 122-207 6-95 (253)
315 PRK08339 short chain dehydroge 87.0 7.3 0.00016 31.4 9.4 80 122-207 7-96 (263)
316 KOG1201|consensus 87.0 4.4 9.5E-05 33.8 7.9 78 122-209 37-127 (300)
317 KOG2920|consensus 86.9 0.49 1.1E-05 39.0 2.4 40 120-161 114-153 (282)
318 PRK06940 short chain dehydroge 86.9 5 0.00011 32.7 8.4 76 124-207 3-87 (275)
319 COG5459 Predicted rRNA methyla 86.8 0.39 8.5E-06 40.9 1.7 77 123-204 114-193 (484)
320 PLN02668 indole-3-acetate carb 86.7 2.4 5.2E-05 36.8 6.5 89 123-211 64-177 (386)
321 PRK05867 short chain dehydroge 86.5 6.5 0.00014 31.3 8.7 80 122-208 8-98 (253)
322 PRK05599 hypothetical protein; 86.4 5.8 0.00013 31.7 8.4 77 125-207 2-88 (246)
323 PRK08217 fabG 3-ketoacyl-(acyl 85.7 6.7 0.00014 31.0 8.4 78 122-206 4-92 (253)
324 PRK07774 short chain dehydroge 85.5 7.3 0.00016 30.8 8.6 79 122-207 5-94 (250)
325 PRK06125 short chain dehydroge 85.4 7.4 0.00016 31.1 8.6 80 122-207 6-92 (259)
326 PRK08862 short chain dehydroge 85.3 8.3 0.00018 30.5 8.7 78 122-206 4-93 (227)
327 PRK08703 short chain dehydroge 85.1 12 0.00025 29.5 9.6 79 122-206 5-97 (239)
328 COG1748 LYS9 Saccharopine dehy 85.1 2.6 5.7E-05 36.6 6.0 73 124-207 2-79 (389)
329 KOG0821|consensus 85.0 3.3 7.2E-05 33.2 6.0 59 122-188 50-108 (326)
330 PF11899 DUF3419: Protein of u 84.6 3.8 8.2E-05 35.5 6.8 51 113-168 28-78 (380)
331 PRK06720 hypothetical protein; 84.6 14 0.00031 28.0 9.3 81 122-209 15-106 (169)
332 PRK07890 short chain dehydroge 84.3 11 0.00024 29.9 9.2 78 122-206 4-92 (258)
333 PRK05854 short chain dehydroge 84.1 11 0.00025 31.3 9.4 82 122-208 13-105 (313)
334 PRK07063 short chain dehydroge 84.0 11 0.00024 30.1 9.0 81 122-207 6-97 (260)
335 PRK06139 short chain dehydroge 83.8 8.8 0.00019 32.4 8.6 80 122-208 6-96 (330)
336 PRK07478 short chain dehydroge 83.7 13 0.00029 29.5 9.4 78 123-207 6-94 (254)
337 PLN02989 cinnamyl-alcohol dehy 83.3 7.4 0.00016 32.3 8.0 81 122-207 4-88 (325)
338 PRK06124 gluconate 5-dehydroge 83.2 14 0.0003 29.4 9.3 79 122-207 10-99 (256)
339 PRK07097 gluconate 5-dehydroge 83.2 14 0.0003 29.6 9.4 79 122-207 9-98 (265)
340 PRK07062 short chain dehydroge 83.2 16 0.00034 29.3 9.6 81 122-207 7-98 (265)
341 PRK08589 short chain dehydroge 83.0 12 0.00027 30.2 9.0 78 122-207 5-93 (272)
342 PRK06914 short chain dehydroge 83.0 11 0.00024 30.4 8.7 80 123-207 3-92 (280)
343 KOG2912|consensus 83.0 4.8 0.0001 34.0 6.4 75 127-206 107-188 (419)
344 PRK09496 trkA potassium transp 82.9 15 0.00032 32.2 10.0 87 106-204 214-305 (453)
345 KOG1562|consensus 82.7 2.3 5.1E-05 35.4 4.4 85 121-207 120-206 (337)
346 PRK08251 short chain dehydroge 82.4 19 0.00042 28.3 9.8 81 123-208 2-93 (248)
347 PRK06949 short chain dehydroge 82.3 16 0.00034 29.0 9.3 79 122-207 8-97 (258)
348 PRK09424 pntA NAD(P) transhydr 82.2 3.8 8.3E-05 36.9 6.0 44 121-166 163-207 (509)
349 PRK05876 short chain dehydroge 82.1 15 0.00032 30.0 9.1 79 122-207 5-94 (275)
350 PRK07677 short chain dehydroge 82.1 11 0.00023 30.0 8.2 77 123-206 1-88 (252)
351 PF12242 Eno-Rase_NADH_b: NAD( 81.8 4.7 0.0001 26.5 4.7 35 122-156 38-73 (78)
352 PRK07035 short chain dehydroge 81.7 16 0.00036 28.9 9.2 77 123-206 8-95 (252)
353 PRK07533 enoyl-(acyl carrier p 81.6 7.1 0.00015 31.4 7.0 79 122-207 9-99 (258)
354 PRK06194 hypothetical protein; 81.6 16 0.00034 29.6 9.2 79 123-208 6-95 (287)
355 PRK06200 2,3-dihydroxy-2,3-dih 81.4 15 0.00032 29.4 8.8 76 122-207 5-91 (263)
356 PRK08277 D-mannonate oxidoredu 81.1 16 0.00035 29.5 9.0 79 122-207 9-98 (278)
357 KOG0022|consensus 81.1 4.9 0.00011 33.9 5.8 47 119-166 189-236 (375)
358 PRK08340 glucose-1-dehydrogena 80.8 12 0.00026 29.9 8.1 75 125-207 2-87 (259)
359 PRK07109 short chain dehydroge 80.5 17 0.00037 30.7 9.2 79 122-207 7-96 (334)
360 PRK07814 short chain dehydroge 80.4 19 0.00041 28.9 9.1 78 122-206 9-97 (263)
361 PRK06181 short chain dehydroge 80.3 14 0.00031 29.4 8.4 78 124-208 2-90 (263)
362 PRK13394 3-hydroxybutyrate deh 80.2 17 0.00037 28.8 8.8 79 123-208 7-96 (262)
363 cd05564 PTS_IIB_chitobiose_lic 80.1 2.9 6.3E-05 28.6 3.6 51 129-204 4-54 (96)
364 PRK05866 short chain dehydroge 80.0 20 0.00042 29.6 9.3 78 123-207 40-128 (293)
365 TIGR03201 dearomat_had 6-hydro 79.9 5.7 0.00012 33.5 6.1 45 119-165 163-208 (349)
366 PRK07231 fabG 3-ketoacyl-(acyl 79.5 20 0.00042 28.2 8.9 77 123-207 5-92 (251)
367 PF02719 Polysacc_synt_2: Poly 79.4 3.1 6.8E-05 34.7 4.2 76 131-210 5-91 (293)
368 PRK07831 short chain dehydroge 79.4 18 0.00039 28.9 8.7 81 122-207 16-108 (262)
369 PRK01747 mnmC bifunctional tRN 79.3 5.5 0.00012 37.1 6.3 89 123-211 58-182 (662)
370 TIGR03206 benzo_BadH 2-hydroxy 79.2 18 0.00038 28.5 8.5 78 123-207 3-91 (250)
371 PRK06197 short chain dehydroge 79.0 25 0.00055 28.9 9.7 82 122-208 15-107 (306)
372 PRK07576 short chain dehydroge 78.9 22 0.00047 28.6 9.1 78 122-206 8-96 (264)
373 TIGR02622 CDP_4_6_dhtase CDP-g 78.8 8.2 0.00018 32.6 6.8 76 123-206 4-85 (349)
374 PRK05650 short chain dehydroge 78.7 13 0.00029 29.8 7.8 76 125-207 2-88 (270)
375 PRK09072 short chain dehydroge 78.6 22 0.00047 28.4 9.0 79 122-208 4-92 (263)
376 TIGR00853 pts-lac PTS system, 78.4 3.7 8.1E-05 28.1 3.7 19 125-144 5-23 (95)
377 PRK06113 7-alpha-hydroxysteroi 78.3 20 0.00043 28.5 8.6 78 122-206 10-98 (255)
378 TIGR00561 pntA NAD(P) transhyd 78.1 13 0.00028 33.7 7.9 42 122-165 163-205 (511)
379 PRK07523 gluconate 5-dehydroge 78.1 24 0.00052 28.0 9.1 79 122-207 9-98 (255)
380 cd08237 ribitol-5-phosphate_DH 78.0 6.7 0.00015 33.1 6.0 46 120-165 161-207 (341)
381 PRK08643 acetoin reductase; Va 77.7 24 0.00052 28.0 9.0 77 123-206 2-89 (256)
382 PRK07024 short chain dehydroge 77.6 19 0.00042 28.6 8.4 77 124-208 3-90 (257)
383 PRK12429 3-hydroxybutyrate deh 77.5 28 0.0006 27.5 9.2 79 123-208 4-93 (258)
384 TIGR03589 PseB UDP-N-acetylglu 77.4 10 0.00022 31.8 6.9 78 123-209 4-87 (324)
385 cd05565 PTS_IIB_lactose PTS_II 77.1 3.5 7.7E-05 28.5 3.3 18 126-144 3-20 (99)
386 PRK09291 short chain dehydroge 77.0 19 0.00042 28.5 8.2 77 124-207 3-84 (257)
387 PRK09242 tropinone reductase; 76.5 36 0.00077 27.0 9.7 81 122-207 8-99 (257)
388 PLN02662 cinnamyl-alcohol dehy 76.4 16 0.00034 30.2 7.8 79 123-206 4-86 (322)
389 PRK07326 short chain dehydroge 76.2 30 0.00064 27.0 9.0 78 122-207 5-93 (237)
390 PLN02896 cinnamyl-alcohol dehy 76.0 15 0.00032 31.0 7.6 80 121-208 8-91 (353)
391 PRK08264 short chain dehydroge 75.9 15 0.00033 28.7 7.3 71 122-206 5-83 (238)
392 PRK08690 enoyl-(acyl carrier p 75.9 14 0.0003 29.8 7.1 79 122-207 5-95 (261)
393 PRK07791 short chain dehydroge 75.4 23 0.00049 29.0 8.3 79 122-207 5-103 (286)
394 PRK10310 PTS system galactitol 75.4 8.3 0.00018 26.3 4.8 13 129-141 7-19 (94)
395 PRK12826 3-ketoacyl-(acyl-carr 75.3 25 0.00053 27.6 8.4 80 122-208 5-95 (251)
396 PRK06196 oxidoreductase; Provi 75.2 25 0.00054 29.2 8.6 76 122-208 25-111 (315)
397 PRK12939 short chain dehydroge 75.0 33 0.00072 26.8 9.1 79 122-207 6-95 (250)
398 PLN03209 translocon at the inn 74.9 18 0.0004 33.2 8.1 87 120-207 77-170 (576)
399 COG0863 DNA modification methy 74.6 17 0.00038 29.7 7.5 49 119-170 219-267 (302)
400 PRK05872 short chain dehydroge 74.2 24 0.00052 29.0 8.2 79 122-208 8-97 (296)
401 TIGR01963 PHB_DH 3-hydroxybuty 74.1 34 0.00073 26.9 8.9 78 124-208 2-90 (255)
402 PRK07067 sorbitol dehydrogenas 74.0 25 0.00054 28.0 8.1 75 123-207 6-91 (257)
403 COG1255 Uncharacterized protei 74.0 11 0.00024 26.9 5.1 67 124-209 15-83 (129)
404 PRK08085 gluconate 5-dehydroge 73.8 31 0.00068 27.3 8.7 79 122-207 8-97 (254)
405 PRK07102 short chain dehydroge 73.8 26 0.00056 27.6 8.1 77 124-206 2-86 (243)
406 PRK08594 enoyl-(acyl carrier p 73.7 16 0.00035 29.3 6.9 78 122-207 6-98 (257)
407 PRK09880 L-idonate 5-dehydroge 73.6 11 0.00023 31.8 6.1 45 120-165 167-212 (343)
408 PRK07453 protochlorophyllide o 73.4 30 0.00065 28.7 8.7 79 122-207 5-94 (322)
409 PRK07984 enoyl-(acyl carrier p 73.3 21 0.00045 28.9 7.5 79 122-207 5-95 (262)
410 PRK05855 short chain dehydroge 73.2 29 0.00063 31.1 9.1 79 123-208 315-404 (582)
411 PF00107 ADH_zinc_N: Zinc-bind 73.2 6.4 0.00014 27.8 4.0 33 132-166 1-33 (130)
412 PRK05875 short chain dehydroge 73.0 33 0.00072 27.5 8.7 80 122-206 6-96 (276)
413 PRK12829 short chain dehydroge 73.0 30 0.00065 27.4 8.4 78 121-207 9-97 (264)
414 TIGR01832 kduD 2-deoxy-D-gluco 73.0 34 0.00074 26.9 8.7 77 122-207 4-91 (248)
415 KOG1209|consensus 72.9 28 0.00061 28.0 7.7 76 122-208 6-93 (289)
416 KOG1205|consensus 72.8 25 0.00055 29.2 7.8 83 122-208 11-103 (282)
417 cd05188 MDR Medium chain reduc 72.7 26 0.00057 27.6 8.0 44 120-165 132-176 (271)
418 PRK09135 pteridine reductase; 72.6 38 0.00083 26.4 8.9 80 122-207 5-96 (249)
419 cd08254 hydroxyacyl_CoA_DH 6-h 72.2 23 0.0005 29.2 7.7 44 120-165 163-207 (338)
420 cd00401 AdoHcyase S-adenosyl-L 72.1 11 0.00023 33.2 5.8 43 121-165 200-243 (413)
421 PRK05786 fabG 3-ketoacyl-(acyl 72.0 35 0.00077 26.5 8.5 77 122-206 4-91 (238)
422 COG1062 AdhC Zn-dependent alco 72.0 17 0.00036 31.2 6.6 52 112-166 177-229 (366)
423 PF03686 UPF0146: Uncharacteri 72.0 13 0.00029 26.9 5.3 70 122-209 13-83 (127)
424 COG0300 DltE Short-chain dehyd 71.8 55 0.0012 26.9 9.6 84 121-210 4-98 (265)
425 PRK09590 celB cellobiose phosp 71.6 10 0.00022 26.5 4.6 19 125-144 3-21 (104)
426 PRK12481 2-deoxy-D-gluconate 3 71.6 34 0.00074 27.2 8.4 78 122-208 7-95 (251)
427 PF01234 NNMT_PNMT_TEMT: NNMT/ 71.5 7.5 0.00016 31.8 4.4 87 121-210 55-172 (256)
428 PRK12823 benD 1,6-dihydroxycyc 71.4 37 0.00081 26.9 8.6 77 122-206 7-94 (260)
429 PRK07666 fabG 3-ketoacyl-(acyl 71.3 44 0.00096 26.1 8.9 78 123-207 7-95 (239)
430 PRK08267 short chain dehydroge 71.3 40 0.00086 26.8 8.7 75 125-208 3-89 (260)
431 PRK06935 2-deoxy-D-gluconate 3 71.2 40 0.00086 26.8 8.7 78 122-207 14-102 (258)
432 PF03721 UDPG_MGDP_dh_N: UDP-g 70.8 3.4 7.4E-05 31.9 2.2 34 132-165 7-41 (185)
433 PRK10669 putative cation:proto 70.8 9.5 0.00021 34.7 5.4 64 125-202 419-487 (558)
434 TIGR02822 adh_fam_2 zinc-bindi 70.7 14 0.00031 30.9 6.2 45 119-165 162-207 (329)
435 PRK08226 short chain dehydroge 70.6 48 0.0011 26.3 9.1 79 122-208 5-94 (263)
436 KOG2811|consensus 70.6 11 0.00025 32.4 5.4 47 122-169 182-231 (420)
437 PRK08415 enoyl-(acyl carrier p 70.5 27 0.00059 28.4 7.7 79 122-207 4-94 (274)
438 PRK12384 sorbitol-6-phosphate 70.2 44 0.00094 26.5 8.7 79 123-207 2-92 (259)
439 PRK07889 enoyl-(acyl carrier p 70.0 18 0.0004 29.0 6.5 77 122-207 6-96 (256)
440 PF05575 V_cholerae_RfbT: Vibr 70.0 7.9 0.00017 29.7 3.9 51 119-170 76-126 (286)
441 COG4221 Short-chain alcohol de 69.9 40 0.00087 27.4 8.1 78 123-209 6-94 (246)
442 PRK05653 fabG 3-ketoacyl-(acyl 69.8 33 0.00071 26.7 7.8 77 123-206 5-92 (246)
443 PLN02427 UDP-apiose/xylose syn 69.8 16 0.00034 31.3 6.4 79 122-206 13-96 (386)
444 PRK06701 short chain dehydroge 69.4 44 0.00095 27.4 8.7 79 122-207 45-135 (290)
445 TIGR02356 adenyl_thiF thiazole 69.2 20 0.00043 28.0 6.3 78 122-204 20-119 (202)
446 PF00106 adh_short: short chai 69.1 18 0.00039 26.5 5.9 77 125-208 2-92 (167)
447 PRK08265 short chain dehydroge 69.0 35 0.00077 27.2 8.0 75 122-206 5-90 (261)
448 PRK07792 fabG 3-ketoacyl-(acyl 68.9 51 0.0011 27.2 9.1 79 122-207 11-100 (306)
449 PRK05717 oxidoreductase; Valid 68.8 35 0.00076 27.1 7.9 77 122-208 9-96 (255)
450 PLN02740 Alcohol dehydrogenase 68.6 14 0.0003 31.7 5.8 46 119-165 195-241 (381)
451 TIGR03451 mycoS_dep_FDH mycoth 68.6 17 0.00037 30.7 6.3 46 119-165 173-219 (358)
452 COG3320 Putative dehydrogenase 68.5 25 0.00054 30.4 7.1 78 131-208 7-99 (382)
453 PRK07806 short chain dehydroge 68.5 43 0.00094 26.3 8.3 78 122-206 5-94 (248)
454 PRK06079 enoyl-(acyl carrier p 68.4 24 0.00051 28.2 6.8 77 122-207 6-94 (252)
455 PRK08303 short chain dehydroge 68.3 35 0.00075 28.4 8.0 76 122-204 7-103 (305)
456 PRK06505 enoyl-(acyl carrier p 68.1 28 0.00061 28.2 7.3 80 122-208 6-97 (271)
457 PRK03659 glutathione-regulated 68.1 12 0.00026 34.5 5.6 65 125-203 402-471 (601)
458 PRK15181 Vi polysaccharide bio 68.0 19 0.00042 30.3 6.5 85 122-209 14-103 (348)
459 PRK06138 short chain dehydroge 67.8 46 0.001 26.1 8.4 78 122-207 4-92 (252)
460 PRK06114 short chain dehydroge 67.6 59 0.0013 25.8 9.0 80 122-208 7-98 (254)
461 TIGR02818 adh_III_F_hyde S-(hy 67.4 17 0.00038 30.9 6.1 46 119-165 182-228 (368)
462 PF02086 MethyltransfD12: D12 67.2 12 0.00026 30.0 4.9 52 110-167 10-62 (260)
463 PRK06180 short chain dehydroge 67.2 45 0.00098 26.9 8.3 76 123-208 4-90 (277)
464 PRK08159 enoyl-(acyl carrier p 67.2 31 0.00066 28.0 7.3 79 122-207 9-99 (272)
465 PRK08416 7-alpha-hydroxysteroi 67.1 55 0.0012 26.1 8.7 79 122-206 7-97 (260)
466 PLN02253 xanthoxin dehydrogena 66.9 32 0.00069 27.7 7.4 78 122-207 17-105 (280)
467 cd08230 glucose_DH Glucose deh 66.8 18 0.0004 30.5 6.1 44 120-165 170-217 (355)
468 COG0569 TrkA K+ transport syst 66.5 21 0.00046 28.4 6.1 68 125-204 2-74 (225)
469 PRK12748 3-ketoacyl-(acyl-carr 66.2 44 0.00095 26.5 8.0 77 123-206 5-105 (256)
470 PRK13656 trans-2-enoyl-CoA red 66.1 55 0.0012 28.7 8.7 83 121-209 39-144 (398)
471 PRK06482 short chain dehydroge 66.1 64 0.0014 25.9 9.0 75 124-208 3-88 (276)
472 PLN02657 3,8-divinyl protochlo 65.9 17 0.00037 31.5 5.8 79 120-205 57-145 (390)
473 TIGR03325 BphB_TodD cis-2,3-di 65.4 53 0.0012 26.2 8.4 75 122-206 4-89 (262)
474 PRK07825 short chain dehydroge 65.4 53 0.0012 26.3 8.4 75 123-208 5-90 (273)
475 PRK06603 enoyl-(acyl carrier p 65.4 39 0.00085 27.1 7.6 79 122-207 7-97 (260)
476 PRK03562 glutathione-regulated 65.3 14 0.0003 34.3 5.3 66 124-203 401-471 (621)
477 TIGR00518 alaDH alanine dehydr 65.2 20 0.00044 30.9 6.1 43 122-166 166-209 (370)
478 PRK07832 short chain dehydroge 65.2 59 0.0013 26.1 8.6 77 125-207 2-89 (272)
479 PLN02650 dihydroflavonol-4-red 65.2 40 0.00086 28.3 7.9 80 123-207 5-88 (351)
480 PRK06123 short chain dehydroge 65.0 57 0.0012 25.5 8.4 77 124-207 3-91 (248)
481 PRK06500 short chain dehydroge 64.9 65 0.0014 25.2 9.1 76 123-208 6-92 (249)
482 PRK07454 short chain dehydroge 64.7 66 0.0014 25.1 8.9 79 122-207 5-94 (241)
483 TIGR01289 LPOR light-dependent 64.6 58 0.0013 27.0 8.6 78 123-207 3-92 (314)
484 PF12692 Methyltransf_17: S-ad 64.5 25 0.00055 26.3 5.6 32 124-156 30-61 (160)
485 PRK12475 thiamine/molybdopteri 64.1 34 0.00074 29.1 7.1 78 122-204 23-124 (338)
486 PF10354 DUF2431: Domain of un 63.7 25 0.00053 26.7 5.7 72 129-205 3-84 (166)
487 TIGR03366 HpnZ_proposed putati 63.7 20 0.00043 29.2 5.6 45 120-165 118-163 (280)
488 PRK09548 PTS system ascorbate- 63.2 30 0.00065 31.9 6.9 62 120-206 503-564 (602)
489 PRK06198 short chain dehydroge 63.1 50 0.0011 26.1 7.8 79 122-207 5-95 (260)
490 PRK08324 short chain dehydroge 63.0 57 0.0012 30.6 9.0 78 122-207 421-509 (681)
491 COG2961 ComJ Protein involved 63.0 67 0.0014 26.4 8.1 77 120-207 87-167 (279)
492 PRK08278 short chain dehydroge 62.9 60 0.0013 26.2 8.3 80 122-208 5-102 (273)
493 PRK01438 murD UDP-N-acetylmura 62.8 79 0.0017 28.0 9.6 73 122-207 15-89 (480)
494 PLN02214 cinnamoyl-CoA reducta 62.7 38 0.00081 28.6 7.2 78 122-206 9-91 (342)
495 PRK00258 aroE shikimate 5-dehy 62.6 79 0.0017 25.9 8.9 45 122-168 122-168 (278)
496 PRK07688 thiamine/molybdopteri 62.1 36 0.00077 29.0 6.9 76 123-203 24-123 (339)
497 cd08255 2-desacetyl-2-hydroxye 62.1 24 0.00052 28.3 5.7 47 119-166 94-141 (277)
498 COG5379 BtaA S-adenosylmethion 61.9 30 0.00064 29.2 6.1 47 120-169 61-107 (414)
499 PRK10538 malonic semialdehyde 61.8 62 0.0013 25.5 8.0 72 125-206 2-84 (248)
500 PRK06182 short chain dehydroge 61.8 56 0.0012 26.2 7.9 73 123-208 3-86 (273)
No 1
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.95 E-value=3.1e-28 Score=191.90 Aligned_cols=153 Identities=35% Similarity=0.557 Sum_probs=132.4
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCC----CCCCCCccccCCCCccCcHHHHHHHHHHHhhhCCCCCEEEE
Q psy7826 53 PMEYLVEHLKETLFIESELPYKAMLAVDRGHYTTW----RPYANCITNIGYGAHMQAPFQQAMVLDDLSEELTEGKKVLD 128 (213)
Q Consensus 53 ~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLD 128 (213)
++++|++.|++.|.+.++++.++|+.+||+.|+|. .+|.|.+++++.++++++|.+.+.+++.+ .++++++|||
T Consensus 1 ~~~~lv~~l~~~g~v~~~~v~~A~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L--~l~pg~~VLe 78 (209)
T PF01135_consen 1 SNKALVDNLIRPGDVTDPRVLDAFRAVPREDFVPPAFRDLAYEDRPLPIGCGQTISAPSMVARMLEAL--DLKPGDRVLE 78 (209)
T ss_dssp CHHHHHHHHHHTTSS-SHHHHHHHHHS-GGGCSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHT--TC-TT-EEEE
T ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHhCCHHHhCchhhhcCCCCCCCeeecceeechHHHHHHHHHHHH--hcCCCCEEEE
Confidence 35899999999999999999999999999999994 79999999999999999999999999999 6999999999
Q ss_pred EcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEEEcCcCcc
Q psy7826 129 IGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIED 208 (213)
Q Consensus 129 iG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~ 208 (213)
+|||+||.|+.++..+++.++|+++|+++..++.|++++..++ ..||.++++|....++..++||+|++++++..
T Consensus 79 IGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~-----~~nv~~~~gdg~~g~~~~apfD~I~v~~a~~~ 153 (209)
T PF01135_consen 79 IGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG-----IDNVEVVVGDGSEGWPEEAPFDRIIVTAAVPE 153 (209)
T ss_dssp ES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT-----THSEEEEES-GGGTTGGG-SEEEEEESSBBSS
T ss_pred ecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc-----cCceeEEEcchhhccccCCCcCEEEEeeccch
Confidence 9999999999999999887899999999999999999999988 57999999999888877789999999999999
Q ss_pred CCCC
Q psy7826 209 IPEG 212 (213)
Q Consensus 209 ~p~~ 212 (213)
+|..
T Consensus 154 ip~~ 157 (209)
T PF01135_consen 154 IPEA 157 (209)
T ss_dssp --HH
T ss_pred HHHH
Confidence 8864
No 2
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3e-27 Score=183.47 Aligned_cols=148 Identities=39% Similarity=0.594 Sum_probs=139.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCC----CCCCCCCccccCCCCccCcHHHHHHHHHHHhhhCCCCCEEEEEc
Q psy7826 55 EYLVEHLKETLFIESELPYKAMLAVDRGHYTT----WRPYANCITNIGYGAHMQAPFQQAMVLDDLSEELTEGKKVLDIG 130 (213)
Q Consensus 55 ~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG 130 (213)
+.++++|++.| +.++++.++|..+||+.|+| ..+|.|.+++++.|+++++|.+.+++++.+ .++++++|||||
T Consensus 4 ~~l~~~lr~~~-i~~~~v~~A~~~vPRe~FVp~~~~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L--~~~~g~~VLEIG 80 (209)
T COG2518 4 RMLVERLRTEG-ITDERVLKAFLAVPRELFVPAAYKHLAYEDRALPIGCGQTISAPHMVARMLQLL--ELKPGDRVLEIG 80 (209)
T ss_pred HHHHHHHHHcC-CCcHHHHHHHHhCCHHhccCchhhcccccCCcccCCCCceecCcHHHHHHHHHh--CCCCCCeEEEEC
Confidence 45889999999 56799999999999999999 679999999999999999999999999999 699999999999
Q ss_pred CCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEEEcCcCccCC
Q psy7826 131 SGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIP 210 (213)
Q Consensus 131 ~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~p 210 (213)
||+||.++.+++.. ++|+++|+.+...+.|++|++.+| ..||.++++|...+++..++||+|++.++...+|
T Consensus 81 tGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg-----~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP 152 (209)
T COG2518 81 TGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLG-----YENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVP 152 (209)
T ss_pred CCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcC-----CCceEEEECCcccCCCCCCCcCEEEEeeccCCCC
Confidence 99999999999997 599999999999999999999999 6789999999999999888999999999999999
Q ss_pred CCC
Q psy7826 211 EGI 213 (213)
Q Consensus 211 ~~l 213 (213)
++|
T Consensus 153 ~~L 155 (209)
T COG2518 153 EAL 155 (209)
T ss_pred HHH
Confidence 864
No 3
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.94 E-value=2.2e-25 Score=176.92 Aligned_cols=152 Identities=36% Similarity=0.583 Sum_probs=138.7
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCC----CCCCCCCccccCCCCccCcHHHHHHHHHHHhhhCCCCCEEEE
Q psy7826 53 PMEYLVEHLKETLFIESELPYKAMLAVDRGHYTT----WRPYANCITNIGYGAHMQAPFQQAMVLDDLSEELTEGKKVLD 128 (213)
Q Consensus 53 ~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLD 128 (213)
.++.|++.|.+.+.+.|+++.++|+.+||+.|+| ..+|.|.+++++.|+.+++|.+.+.+++.+ .+.++.+|||
T Consensus 5 ~~~~~v~~l~~~~~v~~~~v~~a~~~v~R~~fvp~~~~~~ay~d~~~~~~~g~~~~~p~~~~~~~~~l--~~~~g~~VLd 82 (212)
T PRK13942 5 EKRRVIEELIREGYIKSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTISAIHMVAIMCELL--DLKEGMKVLE 82 (212)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHcCCHhhcCCchhhhcCcCCCCccCCCCCEeCcHHHHHHHHHHc--CCCCcCEEEE
Confidence 3478999999999999999999999999999999 468999999999999999999999999998 5889999999
Q ss_pred EcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEEEcCcCcc
Q psy7826 129 IGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIED 208 (213)
Q Consensus 129 iG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~ 208 (213)
+|||+|+.+..+++.+++.++|+++|+++++++.++++++..+ ..+++++++|+...++..++||+|+++++.++
T Consensus 83 IG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g-----~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~ 157 (212)
T PRK13942 83 IGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG-----YDNVEVIVGDGTLGYEENAPYDRIYVTAAGPD 157 (212)
T ss_pred ECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCeEEEECCcccCCCcCCCcCEEEECCCccc
Confidence 9999999999999987666899999999999999999999888 57899999999866655678999999999888
Q ss_pred CCC
Q psy7826 209 IPE 211 (213)
Q Consensus 209 ~p~ 211 (213)
+|+
T Consensus 158 ~~~ 160 (212)
T PRK13942 158 IPK 160 (212)
T ss_pred chH
Confidence 765
No 4
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.93 E-value=1.3e-24 Score=171.65 Aligned_cols=153 Identities=32% Similarity=0.451 Sum_probs=136.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCC----CCCCCCCccccCCCCccCcHHHHHHHHHHHhhhCCCCCEEEEE
Q psy7826 54 MEYLVEHLKETLFIESELPYKAMLAVDRGHYTT----WRPYANCITNIGYGAHMQAPFQQAMVLDDLSEELTEGKKVLDI 129 (213)
Q Consensus 54 ~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDi 129 (213)
++.|++.|++.+.+.++++.++|+.+||+.|+| ..+|.+.++++..++.++.|...+.+++.+ .+.++.+|||+
T Consensus 2 ~~~lv~~~~~~~~v~~~~v~~a~~~vpR~~fv~~~~~~~ay~d~~~~~~~~~~~~~p~~~~~~~~~l--~~~~~~~VLDi 79 (205)
T PRK13944 2 AKRLVEELVREGIIKSERVKKAMLSVPREEFVMPEYRMMAYEDRPLPLFAGATISAPHMVAMMCELI--EPRPGMKILEV 79 (205)
T ss_pred HHHHHHHHHHcCCcCCHHHHHHHHhCCHhHcCChhHHhcCccCCCcccCCCCEechHHHHHHHHHhc--CCCCCCEEEEE
Confidence 367999999999899999999999999999999 468999999999999999999999998888 57788999999
Q ss_pred cCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEEEcCcCccC
Q psy7826 130 GSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDI 209 (213)
Q Consensus 130 G~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~ 209 (213)
|||+|+.+..+++.+++.++|+++|+++.+++.+++++.++++ ..+++++.+|+...++...+||+|+++.+.+++
T Consensus 80 G~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~----~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~ 155 (205)
T PRK13944 80 GTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY----WGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTI 155 (205)
T ss_pred CcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC----CCcEEEEECCcccCCccCCCccEEEEccCcchh
Confidence 9999999999999876567999999999999999999998874 346999999998655555689999999999888
Q ss_pred CCC
Q psy7826 210 PEG 212 (213)
Q Consensus 210 p~~ 212 (213)
|+.
T Consensus 156 ~~~ 158 (205)
T PRK13944 156 PSA 158 (205)
T ss_pred hHH
Confidence 753
No 5
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.93 E-value=2.5e-24 Score=171.24 Aligned_cols=154 Identities=36% Similarity=0.569 Sum_probs=138.6
Q ss_pred chhHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCC----CCCCCCCccccCCCCccCcHHHHHHHHHHHhhhCCCCCEE
Q psy7826 51 KKPMEYLVEHLKETLFIESELPYKAMLAVDRGHYTT----WRPYANCITNIGYGAHMQAPFQQAMVLDDLSEELTEGKKV 126 (213)
Q Consensus 51 ~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v 126 (213)
..++++|++.|.+.+.+.++.+.++|+.+||+.|++ ..+|.+.+.+++.++.+++|.+.+.+++.+ .+.++.+|
T Consensus 4 ~~~~~~~v~~~~~~~~v~~~~v~~a~~~v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l--~~~~~~~V 81 (215)
T TIGR00080 4 ESQKKALIDKLINEGYIKSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELL--ELKPGMKV 81 (215)
T ss_pred hHHHHHHHHHHHhcCCcCCHHHHHHHHhCChhhhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHh--CCCCcCEE
Confidence 456789999999999899999999999999999999 368999999999999999999999999988 57889999
Q ss_pred EEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEEEcCcC
Q psy7826 127 LDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSI 206 (213)
Q Consensus 127 LDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~ 206 (213)
||+|||+|+.+..+++..+++++|+++|+++.+++.|++++++.+ ..+++++++|+....+...+||+|+++.+.
T Consensus 82 LDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g-----~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~ 156 (215)
T TIGR00080 82 LEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG-----LDNVIVIVGDGTQGWEPLAPYDRIYVTAAG 156 (215)
T ss_pred EEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC-----CCCeEEEECCcccCCcccCCCCEEEEcCCc
Confidence 999999999999999987556789999999999999999999988 578999999998655545689999999988
Q ss_pred ccCCC
Q psy7826 207 EDIPE 211 (213)
Q Consensus 207 ~~~p~ 211 (213)
.++|+
T Consensus 157 ~~~~~ 161 (215)
T TIGR00080 157 PKIPE 161 (215)
T ss_pred ccccH
Confidence 88775
No 6
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.88 E-value=1.8e-21 Score=154.45 Aligned_cols=150 Identities=31% Similarity=0.458 Sum_probs=133.3
Q ss_pred chhHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCC----CCCCCCCccccCCCCccCcHHHHHHHHHHHhhhCCCCCEE
Q psy7826 51 KKPMEYLVEHLKETLFIESELPYKAMLAVDRGHYTT----WRPYANCITNIGYGAHMQAPFQQAMVLDDLSEELTEGKKV 126 (213)
Q Consensus 51 ~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v 126 (213)
...++.|+++|+..+ +.++.+.++|+.++|+.|+| ...|.+...+++.+..+++|...+.+++.+ .+.++.+|
T Consensus 6 ~~~~~~~v~~l~~~~-~~~~~~~~a~~~~~r~~f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l--~~~~~~~V 82 (212)
T PRK00312 6 SERFARLVLRLRAEG-ILDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELL--ELKPGDRV 82 (212)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHcCCHhHcCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhc--CCCCCCEE
Confidence 345789999999999 89999999999999999988 568999999999999999999999999888 57888999
Q ss_pred EEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEEEcCcC
Q psy7826 127 LDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSI 206 (213)
Q Consensus 127 LDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~ 206 (213)
||+|||+|+.+..+++.. ++++++|+++.+++.+++++++.+ ..++++..+|....++..++||+|+++.++
T Consensus 83 LeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~ 154 (212)
T PRK00312 83 LEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLG-----LHNVSVRHGDGWKGWPAYAPFDRILVTAAA 154 (212)
T ss_pred EEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCC-----CCceEEEECCcccCCCcCCCcCEEEEccCc
Confidence 999999999999888874 489999999999999999999888 567999999987655555689999999988
Q ss_pred ccCCC
Q psy7826 207 EDIPE 211 (213)
Q Consensus 207 ~~~p~ 211 (213)
+++|+
T Consensus 155 ~~~~~ 159 (212)
T PRK00312 155 PEIPR 159 (212)
T ss_pred hhhhH
Confidence 87764
No 7
>KOG1661|consensus
Probab=99.87 E-value=9.1e-22 Score=151.13 Aligned_cols=166 Identities=39% Similarity=0.658 Sum_probs=147.6
Q ss_pred CCCCchhHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCC----CCCCCCccccCCCCccCcHHHHHHHHHHHhhhCCC
Q psy7826 47 TKMEKKPMEYLVEHLKETLFIESELPYKAMLAVDRGHYTTW----RPYANCITNIGYGAHMQAPFQQAMVLDDLSEELTE 122 (213)
Q Consensus 47 ~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 122 (213)
+.+.+.+.+++++.|++.+++.+.+++++|+.+.|..|.|. .+|.+.+..++++..++.|.+++.+++.|..+++|
T Consensus 3 ~~s~gs~n~~LId~L~~~~~Ir~~~v~~A~~a~dR~dy~p~~~~~n~y~d~pq~~G~n~~iSAp~mha~~le~L~~~L~p 82 (237)
T KOG1661|consen 3 WVSSGSDNDDLIDNLRENKIIRTRRVEQAMRATDRSDYAPRSERTNPYMDSPQKIGYNLTISAPHMHATALEYLDDHLQP 82 (237)
T ss_pred ccccCcchHHHHHHHHhcchhHHHHHHHHHHhhchhhccccccccCCCCCCccccCCceEEcchHHHHHHHHHHHHhhcc
Confidence 44556777999999999999999999999999999999996 89999999999999999999999999999777999
Q ss_pred CCEEEEEcCCccHHHHHHHHHcCCCCEE-EEEeCChHHHHHHHHHHhhCC-----CCCccCCCeEEEEcCCCCCCCCCCC
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVGKTGKV-IGIEHIPQLVQRATHNVISGN-----PEFVKDGRIKFVLGDGRKGYLDEAP 196 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~~~~~v-~gvD~s~~~l~~a~~~~~~~g-----l~~~~~~~v~~~~~d~~~~~~~~~~ 196 (213)
|.+.||+|+|+||+|..++..++..+.+ +|+|..++.++.+++++.+.- .+.++..++.++++|....+++..+
T Consensus 83 G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~ 162 (237)
T KOG1661|consen 83 GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAP 162 (237)
T ss_pred CcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCC
Confidence 9999999999999999999888776654 999999999999999987643 2233456789999999988888889
Q ss_pred cCEEEEcCcCccCCCC
Q psy7826 197 YDIIHVGGSIEDIPEG 212 (213)
Q Consensus 197 fD~Ii~~~~~~~~p~~ 212 (213)
||.|+++++...+|.+
T Consensus 163 YDaIhvGAaa~~~pq~ 178 (237)
T KOG1661|consen 163 YDAIHVGAAASELPQE 178 (237)
T ss_pred cceEEEccCccccHHH
Confidence 9999999999888864
No 8
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.84 E-value=4.7e-20 Score=154.13 Aligned_cols=149 Identities=32% Similarity=0.445 Sum_probs=126.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCC-----CCCCCCcccc-CCC---CccCcHHHHHHHHHHHhhhCCCCC
Q psy7826 54 MEYLVEHLKETLFIESELPYKAMLAVDRGHYTTW-----RPYANCITNI-GYG---AHMQAPFQQAMVLDDLSEELTEGK 124 (213)
Q Consensus 54 ~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~l~~~~~~~~ 124 (213)
++.|++.++..| +.+ ++.++|+.+||+.|+|. ..|.|.++++ ..+ +.+++|.+.+.+++.+ .+++++
T Consensus 7 ~~~lv~~l~~~g-v~d-~vl~a~~~vpRe~Fvp~~~~~~~aY~D~~l~~~~~g~~~~~~~~p~l~a~ll~~L--~i~~g~ 82 (322)
T PRK13943 7 REKLFWILKKYG-ISD-HIAKAFLEVPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWV--GLDKGM 82 (322)
T ss_pred HHHHHHHHHHcC-CcH-HHHHHHHcCCHHHcCCcchhhhhccCCCcccccCCCcccccCCcHHHHHHHHHhc--CCCCCC
Confidence 467999999999 566 99999999999999993 2478888775 444 5778899888888888 577889
Q ss_pred EEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEEEcC
Q psy7826 125 KVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGG 204 (213)
Q Consensus 125 ~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~ 204 (213)
+|||+|||+|+.+..+++..+..++|+++|+++.+++.|+++++++| ..++.++++|+....+...+||+|+++.
T Consensus 83 ~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g-----~~nV~~i~gD~~~~~~~~~~fD~Ii~~~ 157 (322)
T PRK13943 83 RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG-----IENVIFVCGDGYYGVPEFAPYDVIFVTV 157 (322)
T ss_pred EEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEeCChhhcccccCCccEEEECC
Confidence 99999999999999999987545689999999999999999999888 5789999999876555446799999998
Q ss_pred cCccCCC
Q psy7826 205 SIEDIPE 211 (213)
Q Consensus 205 ~~~~~p~ 211 (213)
+..++|+
T Consensus 158 g~~~ip~ 164 (322)
T PRK13943 158 GVDEVPE 164 (322)
T ss_pred chHHhHH
Confidence 8877764
No 9
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.84 E-value=3e-20 Score=161.56 Aligned_cols=171 Identities=18% Similarity=0.137 Sum_probs=133.2
Q ss_pred HHHHHhhhccccceeeeccCCCCcccccchhhhccCccccCCCCchhHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCC
Q psy7826 7 IFWLAFGHLATGQEIFGINNKPNNYENNLDVQVCMGKHKGTKMEKKPMEYLVEHLKETLFIESELPYKAMLAVDRGHYTT 86 (213)
Q Consensus 7 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 86 (213)
-.|.+.||.+++++++.++|.|+.. ++|+|+.+.+++++.+.|.+.|+ .+.+..+.|
T Consensus 140 ~~~~~~~g~~~~~~~~~~~~~~~~~------------~~RvN~~k~~~~~~~~~l~~~g~-----------~~~~~~~~~ 196 (431)
T PRK14903 140 NYWRSFLPEEAVLRIMEWNQEPLPT------------MLRVNSLAITREEVIKILAEEGT-----------EAVPGKHSP 196 (431)
T ss_pred HHHHHHcCHHHHHHHHHHhcCCCCe------------eEEeeCCcCCHHHHHHHHHHCCC-----------eeEECCCCC
Confidence 4699999999999999999999666 99999999999999999999886 322223333
Q ss_pred CCCCC-------CCccccCCCCccCcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHH
Q psy7826 87 WRPYA-------NCITNIGYGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQL 159 (213)
Q Consensus 87 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~ 159 (213)
...+. .....+..|....|+.....+...+ .+.++.+|||+|||+|++|.++++.+++.++|+++|+++.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~~~~~~l--~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~r 274 (431)
T PRK14903 197 FSLIVRKLGVNMNDSRVIKDGLATVQGESSQIVPLLM--ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREK 274 (431)
T ss_pred ceEEEcCCCCCcccChHHHCCeEEEECHHHHHHHHHh--CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHH
Confidence 11100 0111134566677777666555556 57889999999999999999999998777899999999999
Q ss_pred HHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC-CCCCCcCEEEEcCcCc
Q psy7826 160 VQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-LDEAPYDIIHVGGSIE 207 (213)
Q Consensus 160 l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~-~~~~~fD~Ii~~~~~~ 207 (213)
++.+++++++.| ..+++++++|+.... ...++||+|++|+.+.
T Consensus 275 l~~~~~n~~r~g-----~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCs 318 (431)
T PRK14903 275 IQLVEKHAKRLK-----LSSIEIKIADAERLTEYVQDTFDRILVDAPCT 318 (431)
T ss_pred HHHHHHHHHHcC-----CCeEEEEECchhhhhhhhhccCCEEEECCCCC
Confidence 999999999998 567999999987432 1235799999998774
No 10
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.83 E-value=4.6e-20 Score=160.89 Aligned_cols=170 Identities=15% Similarity=0.134 Sum_probs=132.5
Q ss_pred HHHHhhhccccceeeeccCCCCcccccchhhhccCccccCCCCchhHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCC
Q psy7826 8 FWLAFGHLATGQEIFGINNKPNNYENNLDVQVCMGKHKGTKMEKKPMEYLVEHLKETLFIESELPYKAMLAVDRGHYTTW 87 (213)
Q Consensus 8 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 87 (213)
.|.+.||.+.+++++.++|.|+.+ ++|+|+.+.+++++.+.|...|+ .+....+.+.
T Consensus 156 ~~~~~~g~~~~~~~~~~~~~~~~~------------~~Rvn~~k~~~~~~~~~l~~~g~-----------~~~~~~~~~~ 212 (434)
T PRK14901 156 LWLEWLGLEEAEQLCKWFNQPPSL------------DLRINPLRTSLEEVQAALAEAGI-----------TATPIPGLPQ 212 (434)
T ss_pred HHHHHhCHHHHHHHHHHhCCCCCe------------EEEECCCCCCHHHHHHHHHHCCC-----------ceEECCCCCC
Confidence 689999999999999999999766 99999999999999999999986 3222223231
Q ss_pred CCCCC-------CccccCCCCccCcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHH
Q psy7826 88 RPYAN-------CITNIGYGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLV 160 (213)
Q Consensus 88 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l 160 (213)
..... ....+..|....++.....+...+ .+.++++|||+|||+|++|.++++.+++.++|+++|+++.++
T Consensus 213 ~~~~~~~~~~~~~~~~f~~g~~~~qd~~s~l~~~~l--~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl 290 (434)
T PRK14901 213 GLRLTGNPGSIRQLPGYEEGWWTVQDRSAQLVAPLL--DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRL 290 (434)
T ss_pred eEEecCCCCccccChHHhCCeEEEECHHHHHHHHHh--CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHH
Confidence 11000 011133466667777766666666 578899999999999999999999987678999999999999
Q ss_pred HHHHHHHhhCCCCCccCCCeEEEEcCCCCCC----CCCCCcCEEEEcCcCc
Q psy7826 161 QRATHNVISGNPEFVKDGRIKFVLGDGRKGY----LDEAPYDIIHVGGSIE 207 (213)
Q Consensus 161 ~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~----~~~~~fD~Ii~~~~~~ 207 (213)
+.++++++++| ..+++++++|+.... ...++||+|++|+.+.
T Consensus 291 ~~~~~n~~r~g-----~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCS 336 (434)
T PRK14901 291 KKLQENAQRLG-----LKSIKILAADSRNLLELKPQWRGYFDRILLDAPCS 336 (434)
T ss_pred HHHHHHHHHcC-----CCeEEEEeCChhhcccccccccccCCEEEEeCCCC
Confidence 99999999998 568999999987532 1235799999987543
No 11
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.78 E-value=2.3e-18 Score=150.63 Aligned_cols=167 Identities=16% Similarity=0.171 Sum_probs=128.5
Q ss_pred HHHHhhhccccceeeeccCCCCcccccchhhhccCccccCCCCchhHHHHHHHHHHcCCCCCHHHHHHHHhCCCCC----
Q psy7826 8 FWLAFGHLATGQEIFGINNKPNNYENNLDVQVCMGKHKGTKMEKKPMEYLVEHLKETLFIESELPYKAMLAVDRGH---- 83 (213)
Q Consensus 8 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~---- 83 (213)
.|.+.||.+.+.+++.++|.|+.+ .+|+|+.+.+++++.+.|...|+ ......
T Consensus 158 ~~~~~~g~~~~~~~~~~~~~~~~~------------~~Rvn~~~~~~~~~~~~l~~~~~-----------~~~~~~~~~~ 214 (445)
T PRK14904 158 RWIARYGEERTEAMLSYNNQAPLF------------GFRINRLKTTPEKFLAAPADASV-----------TFEKSGLPNF 214 (445)
T ss_pred HHHHHhChHHHHHHHHHhCCCCCc------------eeEeCCCCCCHHHHHHHHHhCCC-----------ceEEcCcceE
Confidence 689999999999999999999666 89999999999999999988885 111111
Q ss_pred CCCCCCCCCCccccCCCCccCcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHH
Q psy7826 84 YTTWRPYANCITNIGYGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRA 163 (213)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a 163 (213)
+.. ..+.........|....++.........+ .+.++.+|||+|||+|++|.++++.+++.++|+++|+++.+++.+
T Consensus 215 ~~~-~~~~~~~~~~~~G~~~vqd~~s~l~~~~l--~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~ 291 (445)
T PRK14904 215 FLS-KDFSLFEPFLKLGLVSVQNPTQALACLLL--NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKI 291 (445)
T ss_pred EEe-ccccccChHHhCcEEEEeCHHHHHHHHhc--CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHH
Confidence 111 11111111234466666666656666666 467889999999999999999999876667999999999999999
Q ss_pred HHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEEEcCcC
Q psy7826 164 THNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSI 206 (213)
Q Consensus 164 ~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~ 206 (213)
++++++.| ..+++++++|+.... +..+||+|++|..+
T Consensus 292 ~~~~~~~g-----~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pc 328 (445)
T PRK14904 292 RSHASALG-----ITIIETIEGDARSFS-PEEQPDAILLDAPC 328 (445)
T ss_pred HHHHHHhC-----CCeEEEEeCcccccc-cCCCCCEEEEcCCC
Confidence 99999988 568999999987643 33579999998654
No 12
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.77 E-value=3.8e-18 Score=149.35 Aligned_cols=170 Identities=19% Similarity=0.134 Sum_probs=131.0
Q ss_pred HHHHhhhccccceeeeccCCCCcccccchhhhccCccccCCCCchhHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCC
Q psy7826 8 FWLAFGHLATGQEIFGINNKPNNYENNLDVQVCMGKHKGTKMEKKPMEYLVEHLKETLFIESELPYKAMLAVDRGHYTTW 87 (213)
Q Consensus 8 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 87 (213)
.|.+.||.+..++++++++.|+.. ++|+|+.+.+++++.+.|.+.|+ .+.+..+.|.
T Consensus 156 ~~~~~~g~~~~~~~l~~~~~~~~~------------~~Rvn~~k~~~~~~~~~l~~~g~-----------~~~~~~~~~~ 212 (444)
T PRK14902 156 RWIDQYGEEKAEKILESLNEPPKA------------SIRVNTLKISVEELIEKLEEEGY-----------EVEESLLSPE 212 (444)
T ss_pred HHHHHhCHHHHHHHHHHcCCCCCe------------EEEEcCCCCCHHHHHHHHHHcCc-----------eeEEcCCCCC
Confidence 588999999999999999999666 89999999999999999998886 3333333331
Q ss_pred CCCC-----CCccccCCCCccCcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHH
Q psy7826 88 RPYA-----NCITNIGYGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQR 162 (213)
Q Consensus 88 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~ 162 (213)
.... .....+..|....++.....+...+ .+.++.+|||+|||+|++|.++++.+++.++|+++|+++.+++.
T Consensus 213 ~~~~~~~~~~~~~~~~~G~~~~qd~~s~lv~~~l--~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~ 290 (444)
T PRK14902 213 ALVIEKGNIAGTDLFKDGLITIQDESSMLVAPAL--DPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKL 290 (444)
T ss_pred eEEEeCCCcccChHHhCceEEEEChHHHHHHHHh--CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHH
Confidence 1110 0111133466666776666666666 46788999999999999999999987667899999999999999
Q ss_pred HHHHHhhCCCCCccCCCeEEEEcCCCCCCC-CCCCcCEEEEcCcCc
Q psy7826 163 ATHNVISGNPEFVKDGRIKFVLGDGRKGYL-DEAPYDIIHVGGSIE 207 (213)
Q Consensus 163 a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~-~~~~fD~Ii~~~~~~ 207 (213)
++++++++| ..+++++++|+..... ..++||+|+++..+.
T Consensus 291 ~~~n~~~~g-----~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcs 331 (444)
T PRK14902 291 IEENAKRLG-----LTNIETKALDARKVHEKFAEKFDKILVDAPCS 331 (444)
T ss_pred HHHHHHHcC-----CCeEEEEeCCcccccchhcccCCEEEEcCCCC
Confidence 999999998 4679999999875321 125799999997643
No 13
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.77 E-value=3.4e-18 Score=149.28 Aligned_cols=172 Identities=11% Similarity=0.042 Sum_probs=132.2
Q ss_pred HHHHhhhc-cccceeeeccCCCCcccccchhhhccCccccCCCCchhHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCC
Q psy7826 8 FWLAFGHL-ATGQEIFGINNKPNNYENNLDVQVCMGKHKGTKMEKKPMEYLVEHLKETLFIESELPYKAMLAVDRGHYTT 86 (213)
Q Consensus 8 ~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 86 (213)
.|.+.||. ++.+.++.+++.|+.. ++|+|+.+.+.+++.+.|.+.|+ .+....+.+
T Consensus 11 ~~~~~lg~~ee~~~~l~a~~~~~~~------------~lRvN~lK~~~~~~~~~L~~~g~-----------~~~~~p~~~ 67 (470)
T PRK11933 11 QMREAMPSHLSMDDFIAACQRPLRR------------SIRVNTLKISVADFLQLMAPYGW-----------TLTPIPWCE 67 (470)
T ss_pred HHHHHhCCcHHHHHHHHHcCCCCCe------------EEEEcCCcCCHHHHHHHHHhCCC-----------ceeECCCCC
Confidence 58899997 6788999999999666 99999999999999999988886 333333443
Q ss_pred CCCCCCC----------ccccCCCCccCcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCC
Q psy7826 87 WRPYANC----------ITNIGYGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHI 156 (213)
Q Consensus 87 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s 156 (213)
...|.+. ......|....|+.........+...++++++|||+|||+|++|.++++.+++.+.|+++|++
T Consensus 68 ~g~~~~~~~~~~~~~~~~~~~~~G~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~ 147 (470)
T PRK11933 68 EGFWIERDDEDALPLGNTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYS 147 (470)
T ss_pred ceEEEecCccccCCcccChHHHCCcEEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCC
Confidence 2222111 011234666777766665556553246899999999999999999999999878899999999
Q ss_pred hHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC-CCCCCcCEEEEcCcCc
Q psy7826 157 PQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-LDEAPYDIIHVGGSIE 207 (213)
Q Consensus 157 ~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~-~~~~~fD~Ii~~~~~~ 207 (213)
+.+++.+++|++++| ..++.+...|..... .....||.|++|+.+.
T Consensus 148 ~~R~~~L~~nl~r~G-----~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPCS 194 (470)
T PRK11933 148 ASRVKVLHANISRCG-----VSNVALTHFDGRVFGAALPETFDAILLDAPCS 194 (470)
T ss_pred HHHHHHHHHHHHHcC-----CCeEEEEeCchhhhhhhchhhcCeEEEcCCCC
Confidence 999999999999999 678999999986321 1124699999999876
No 14
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.76 E-value=1.7e-17 Score=144.56 Aligned_cols=167 Identities=16% Similarity=0.099 Sum_probs=126.2
Q ss_pred HHHHhhhccccceeeeccCCCCcccccchhhhccCccccCCCCchhHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCC
Q psy7826 8 FWLAFGHLATGQEIFGINNKPNNYENNLDVQVCMGKHKGTKMEKKPMEYLVEHLKETLFIESELPYKAMLAVDRGHYTTW 87 (213)
Q Consensus 8 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 87 (213)
.|.+.|| +....++.++|.|+.. .+|+|+.+.+++++.+.|...|+ .+....+.|.
T Consensus 150 ~~~~~~~-~~~~~~~~~~~~~~~~------------~~Rvn~~k~~~~~~~~~l~~~~~-----------~~~~~~~~~~ 205 (427)
T PRK10901 150 RLKKAYP-EQWQAILAANNQRPPM------------WLRVNRRHHSRDAYLALLAEAGI-----------EAFPHAVGPD 205 (427)
T ss_pred HHHHHhH-HHHHHHHHHcCCCCCe------------EEEEcCCCCCHHHHHHHHHhCCC-----------ceeecCCCCC
Confidence 5888886 4566799999999666 89999999999999999988885 3322233331
Q ss_pred CCCCCC------ccccCCCCccCcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHH
Q psy7826 88 RPYANC------ITNIGYGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQ 161 (213)
Q Consensus 88 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~ 161 (213)
...... ...+..|....|+.....+...+ .+.++.+|||+|||+|+++.++++.. +.++|+++|+++.+++
T Consensus 206 ~~~~~~~~~~~~~~~~~~G~~~iQd~~s~~~~~~l--~~~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~s~~~l~ 282 (427)
T PRK10901 206 AIRLETPVPVHQLPGFAEGWVSVQDAAAQLAATLL--APQNGERVLDACAAPGGKTAHILELA-PQAQVVALDIDAQRLE 282 (427)
T ss_pred eEEECCCCCcccCchhhCceEEEECHHHHHHHHHc--CCCCCCEEEEeCCCCChHHHHHHHHc-CCCEEEEEeCCHHHHH
Confidence 110001 11134466677777777777777 57889999999999999999999986 4479999999999999
Q ss_pred HHHHHHhhCCCCCccCCCeEEEEcCCCCCC--CCCCCcCEEEEcCcCc
Q psy7826 162 RATHNVISGNPEFVKDGRIKFVLGDGRKGY--LDEAPYDIIHVGGSIE 207 (213)
Q Consensus 162 ~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~--~~~~~fD~Ii~~~~~~ 207 (213)
.++++++++|+ +++++++|+.... ....+||.|++|..+.
T Consensus 283 ~~~~n~~~~g~------~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs 324 (427)
T PRK10901 283 RVRENLQRLGL------KATVIVGDARDPAQWWDGQPFDRILLDAPCS 324 (427)
T ss_pred HHHHHHHHcCC------CeEEEEcCcccchhhcccCCCCEEEECCCCC
Confidence 99999999883 4789999987432 2235799999988654
No 15
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.75 E-value=1.5e-17 Score=144.75 Aligned_cols=168 Identities=14% Similarity=0.021 Sum_probs=122.4
Q ss_pred HHHhhhccccceeeeccCCCCcccccchhhhccCccccCCCCchhHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCCC
Q psy7826 9 WLAFGHLATGQEIFGINNKPNNYENNLDVQVCMGKHKGTKMEKKPMEYLVEHLKETLFIESELPYKAMLAVDRGHYTTWR 88 (213)
Q Consensus 9 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 88 (213)
|.+.|+. ...+++.++|.|+.. ++|+|+.+.+++++.+.|.+.|+ .+.+..+.+..
T Consensus 145 ~~~~~~~-~~~~~l~~~~~~~~~------------~~Rvn~~k~~~~~~~~~l~~~g~-----------~~~~~~~~~~~ 200 (426)
T TIGR00563 145 LQKAYPG-QWQSICEANNQRPPM------------WLRINRTKHSRDEWLALLAEAGM-----------KGFPHDLAPDA 200 (426)
T ss_pred HHHHhHH-HHHHHHHHhCCCCCe------------EEEEcCCcCCHHHHHHHHHhcCC-----------ceeeCCCCCCe
Confidence 5666643 345799999999655 89999999999999999999886 22222233311
Q ss_pred CCC------CCccccCCCCccCcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHH
Q psy7826 89 PYA------NCITNIGYGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQR 162 (213)
Q Consensus 89 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~ 162 (213)
... .....+..|....|+.....+...+ .+.++.+|||+|||+|++|.++++.++ .++|+++|+++.+++.
T Consensus 201 ~~~~~~~~~~~~~~~~~G~~~~Qd~~s~~~~~~L--~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~ 277 (426)
T TIGR00563 201 VRLETPAAVHALPGFEEGWVTVQDASAQWVATWL--APQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKR 277 (426)
T ss_pred EEECCCCCcccCchhhCCeEEEECHHHHHHHHHh--CCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHH
Confidence 000 0111234566777777777777777 578899999999999999999999974 6899999999999999
Q ss_pred HHHHHhhCCCCCccCCCeEEEEcCCCCCCC--CCCCcCEEEEcCcCc
Q psy7826 163 ATHNVISGNPEFVKDGRIKFVLGDGRKGYL--DEAPYDIIHVGGSIE 207 (213)
Q Consensus 163 a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~--~~~~fD~Ii~~~~~~ 207 (213)
+++++++.|+ ...+.+..+|...... ...+||+|++++.+.
T Consensus 278 ~~~n~~r~g~----~~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcS 320 (426)
T TIGR00563 278 VYENLKRLGL----TIKAETKDGDGRGPSQWAENEQFDRILLDAPCS 320 (426)
T ss_pred HHHHHHHcCC----CeEEEEeccccccccccccccccCEEEEcCCCC
Confidence 9999999884 2234446677653221 345799999986543
No 16
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=1e-16 Score=136.12 Aligned_cols=172 Identities=16% Similarity=0.080 Sum_probs=131.0
Q ss_pred HHHHHhhhccccceeeeccCCCCcccccchhhhccCccccCCCCchhHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCC
Q psy7826 7 IFWLAFGHLATGQEIFGINNKPNNYENNLDVQVCMGKHKGTKMEKKPMEYLVEHLKETLFIESELPYKAMLAVDRGHYTT 86 (213)
Q Consensus 7 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 86 (213)
-+|.+.||.+..+.++.+++.++.. ++|+|+.+.+.++..+.|...++...+. .+.+
T Consensus 60 ~~~~~~~~~~~~~~~~~a~~~~~~~------------~~Rvn~lk~~~~~~~~~l~~~~~~~~~~-----------~~~~ 116 (355)
T COG0144 60 EKLPDALGEDEAEAIAAALLRPPPR------------SLRVNTLKADVEELLEALEEAGVLDEKP-----------WVLD 116 (355)
T ss_pred HHHHHHcChHHHHHHHHHcCCCCCe------------eEEEcCccCCHHHHHHHHhhcccccccC-----------Cccc
Confidence 4678899999888999999999555 8999999999999999999987632211 1111
Q ss_pred C-----CCCCCCcc-ccCCCCccCcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCC-EEEEEeCChHH
Q psy7826 87 W-----RPYANCIT-NIGYGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQL 159 (213)
Q Consensus 87 ~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~-~v~gvD~s~~~ 159 (213)
. ........ .+..|....|+.........+ ++++|++|||+|+++|++|.++++.+.+.+ .|+++|+++.+
T Consensus 117 ~~~~i~~~~~~~~~~~~~~G~~~vQd~sS~l~a~~L--~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~R 194 (355)
T COG0144 117 EVLRIEASGPIGRLPEFAEGLIYVQDEASQLPALVL--DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKR 194 (355)
T ss_pred cEEEecCCCCcccChhhhceEEEEcCHHHHHHHHHc--CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHH
Confidence 0 00000011 244577778877777666666 689999999999999999999999986544 45999999999
Q ss_pred HHHHHHHHhhCCCCCccCCCeEEEEcCCCC---CCCCCCCcCEEEEcCcCcc
Q psy7826 160 VQRATHNVISGNPEFVKDGRIKFVLGDGRK---GYLDEAPYDIIHVGGSIED 208 (213)
Q Consensus 160 l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~---~~~~~~~fD~Ii~~~~~~~ 208 (213)
++..++|++++| ..|+.+...|... ..+...+||.|++|+.++.
T Consensus 195 l~~l~~nl~RlG-----~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg 241 (355)
T COG0144 195 LKRLRENLKRLG-----VRNVIVVNKDARRLAELLPGGEKFDRILLDAPCSG 241 (355)
T ss_pred HHHHHHHHHHcC-----CCceEEEecccccccccccccCcCcEEEECCCCCC
Confidence 999999999999 6778888888762 2233336999999998764
No 17
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.68 E-value=6.9e-16 Score=126.40 Aligned_cols=149 Identities=14% Similarity=0.058 Sum_probs=105.6
Q ss_pred ccCCCCchhHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCC-CCCCCC-CCCccccCCCCccCcHHHHHHHHHHHhhhCCC
Q psy7826 45 KGTKMEKKPMEYLVEHLKETLFIESELPYKAMLAVDRGHY-TTWRPY-ANCITNIGYGAHMQAPFQQAMVLDDLSEELTE 122 (213)
Q Consensus 45 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 122 (213)
+|+|+.+.+++++++.|.+.|+... .+ .. ...+ +..... .........|....|..........+ .+++
T Consensus 1 ~RvN~lk~~~~~~~~~l~~~~~~~~-~~-----~~-~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~~~~~~l--~~~~ 71 (264)
T TIGR00446 1 IRVNTLKISVADLLQRLENRGVTLI-PW-----CE-EGFFEVNESPLPIGSTPEYLSGLYYIQEASSMIPPLAL--EPDP 71 (264)
T ss_pred CeecCCCCCHHHHHHHHHhCCCcee-ec-----CC-CceEEEeCCCCCcccChhHhCCeEEEECHHHHHHHHHh--CCCC
Confidence 4889999999999999999886211 00 00 0000 010000 00111123455666666555455555 5788
Q ss_pred CCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEEE
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHV 202 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~ 202 (213)
+.+|||+|||+|++|.++++.+++.+.|+++|+++.+++.++++++++| ..+++++..|+.......++||+|++
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g-----~~~v~~~~~D~~~~~~~~~~fD~Vl~ 146 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG-----VLNVAVTNFDGRVFGAAVPKFDAILL 146 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-----CCcEEEecCCHHHhhhhccCCCEEEE
Confidence 9999999999999999999998767899999999999999999999998 56899999998643323346999999
Q ss_pred cCcCc
Q psy7826 203 GGSIE 207 (213)
Q Consensus 203 ~~~~~ 207 (213)
|..+.
T Consensus 147 D~Pcs 151 (264)
T TIGR00446 147 DAPCS 151 (264)
T ss_pred cCCCC
Confidence 97655
No 18
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=99.66 E-value=1.5e-16 Score=131.34 Aligned_cols=158 Identities=22% Similarity=0.243 Sum_probs=119.2
Q ss_pred eeeccCCCCcccccchhhhccCccccCCCCchhHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCC-------CCCCCC
Q psy7826 21 IFGINNKPNNYENNLDVQVCMGKHKGTKMEKKPMEYLVEHLKETLFIESELPYKAMLAVDRGHYTTW-------RPYANC 93 (213)
Q Consensus 21 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 93 (213)
|+.++|.++.. ++|+|+.+++++++.+.|...|+ .+....+.+. ..+.-.
T Consensus 1 il~~~n~~~~~------------~iRvN~~k~~~~~~~~~L~~~g~-----------~~~~~~~~~~~~~~~~~~~~~i~ 57 (283)
T PF01189_consen 1 ILEANNCPPPV------------TIRVNTLKISREELLEELEEEGI-----------QLEPIPRSPDALRVIGKSPYSIC 57 (283)
T ss_dssp HHHHCTS--GE------------EEEE-TTTSSHHHHHHHHHHTTH-----------EEEEETSTTCEEEEEEECSSCGG
T ss_pred CccccCCCCCe------------EEEECcCcCCHHHHHHHHhhccc-----------ceEEcccccchhccccccccchh
Confidence 45667777444 99999999999999999999996 3322222221 111111
Q ss_pred c-cccCCCCccCcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCC
Q psy7826 94 I-TNIGYGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNP 172 (213)
Q Consensus 94 ~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl 172 (213)
. ..+..|....|+.........+ .+.++.+|||+|||+|++|.++++.+++.+.++++|+++.++...+++++++|
T Consensus 58 ~l~~~~~G~~~vQd~sS~l~~~~L--~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g- 134 (283)
T PF01189_consen 58 SLPEFKNGLFYVQDESSQLVALAL--DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG- 134 (283)
T ss_dssp GSHHHHTTSEEEHHHHHHHHHHHH--TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-
T ss_pred hchhhhCCcEEecccccccccccc--cccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC-
Confidence 1 1245678888888777777777 58899999999999999999999999778999999999999999999999999
Q ss_pred CCccCCCeEEEEcCCCCC--CCCCCCcCEEEEcCcCcc
Q psy7826 173 EFVKDGRIKFVLGDGRKG--YLDEAPYDIIHVGGSIED 208 (213)
Q Consensus 173 ~~~~~~~v~~~~~d~~~~--~~~~~~fD~Ii~~~~~~~ 208 (213)
..++.....|.... ......||.|++++.+..
T Consensus 135 ----~~~v~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg 168 (283)
T PF01189_consen 135 ----VFNVIVINADARKLDPKKPESKFDRVLVDAPCSG 168 (283)
T ss_dssp -----SSEEEEESHHHHHHHHHHTTTEEEEEEECSCCC
T ss_pred ----CceEEEEeeccccccccccccccchhhcCCCccc
Confidence 68898888887643 122235999999998764
No 19
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.63 E-value=3.1e-15 Score=119.61 Aligned_cols=87 Identities=25% Similarity=0.494 Sum_probs=78.4
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCE
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDI 199 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~ 199 (213)
..+|.+|||+|||||-.+..+++..+ .++|+++|+|+.|++.+++++...+ ..+++|+++|+...+.++.+||+
T Consensus 49 ~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~-----~~~i~fv~~dAe~LPf~D~sFD~ 122 (238)
T COG2226 49 IKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKG-----VQNVEFVVGDAENLPFPDNSFDA 122 (238)
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccC-----ccceEEEEechhhCCCCCCccCE
Confidence 44899999999999999999999985 7899999999999999999998877 45599999999965566679999
Q ss_pred EEEcCcCccCCCC
Q psy7826 200 IHVGGSIEDIPEG 212 (213)
Q Consensus 200 Ii~~~~~~~~p~~ 212 (213)
|.+..+++++++.
T Consensus 123 vt~~fglrnv~d~ 135 (238)
T COG2226 123 VTISFGLRNVTDI 135 (238)
T ss_pred EEeeehhhcCCCH
Confidence 9999999999874
No 20
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.62 E-value=2.3e-15 Score=120.95 Aligned_cols=93 Identities=28% Similarity=0.491 Sum_probs=67.6
Q ss_pred HHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC
Q psy7826 112 VLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY 191 (213)
Q Consensus 112 ~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~ 191 (213)
+++.+ ...++.+|||+|||||..+..+++.+++.++|+|+|+|+.|++.++++....+ ..+|+++++|+...+
T Consensus 39 ~~~~~--~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~-----~~~i~~v~~da~~lp 111 (233)
T PF01209_consen 39 LIKLL--GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG-----LQNIEFVQGDAEDLP 111 (233)
T ss_dssp HHHHH--T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-------SEEEEE-BTTB--
T ss_pred HHhcc--CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC-----CCCeeEEEcCHHHhc
Confidence 44444 46788999999999999999999988778899999999999999999999877 469999999998655
Q ss_pred CCCCCcCEEEEcCcCccCCC
Q psy7826 192 LDEAPYDIIHVGGSIEDIPE 211 (213)
Q Consensus 192 ~~~~~fD~Ii~~~~~~~~p~ 211 (213)
.++++||+|++..+++++|+
T Consensus 112 ~~d~sfD~v~~~fglrn~~d 131 (233)
T PF01209_consen 112 FPDNSFDAVTCSFGLRNFPD 131 (233)
T ss_dssp S-TT-EEEEEEES-GGG-SS
T ss_pred CCCCceeEEEHHhhHHhhCC
Confidence 55679999999999999986
No 21
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.61 E-value=1.1e-14 Score=111.20 Aligned_cols=101 Identities=28% Similarity=0.398 Sum_probs=89.0
Q ss_pred CccCcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCe
Q psy7826 101 AHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRI 180 (213)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v 180 (213)
..++.+++.+..+..| .+.++++++|+|||||+.+..++.. +|.++|+++|.++++++..++|++++| .+|+
T Consensus 15 ~p~TK~EIRal~ls~L--~~~~g~~l~DIGaGtGsi~iE~a~~-~p~~~v~AIe~~~~a~~~~~~N~~~fg-----~~n~ 86 (187)
T COG2242 15 GPMTKEEIRALTLSKL--RPRPGDRLWDIGAGTGSITIEWALA-GPSGRVIAIERDEEALELIERNAARFG-----VDNL 86 (187)
T ss_pred CCCcHHHHHHHHHHhh--CCCCCCEEEEeCCCccHHHHHHHHh-CCCceEEEEecCHHHHHHHHHHHHHhC-----CCcE
Confidence 3478888888888888 5899999999999999999999954 799999999999999999999999999 7999
Q ss_pred EEEEcCCCCCCCCCCCcCEEEEcCcCccCC
Q psy7826 181 KFVLGDGRKGYLDEAPYDIIHVGGSIEDIP 210 (213)
Q Consensus 181 ~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~p 210 (213)
+++.+|+.+.+.+..+||.||++++ .+++
T Consensus 87 ~vv~g~Ap~~L~~~~~~daiFIGGg-~~i~ 115 (187)
T COG2242 87 EVVEGDAPEALPDLPSPDAIFIGGG-GNIE 115 (187)
T ss_pred EEEeccchHhhcCCCCCCEEEECCC-CCHH
Confidence 9999999866655447999999998 5443
No 22
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.57 E-value=2.3e-14 Score=107.83 Aligned_cols=85 Identities=27% Similarity=0.463 Sum_probs=72.8
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCC--CCcC
Q psy7826 121 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDE--APYD 198 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~--~~fD 198 (213)
+.+.+|||+|||+|..+..+++.+++..+++|+|+|+.+++.|++++++.+ .+++++.++|+.+ ++.. ..||
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~-----~~ni~~~~~d~~~-l~~~~~~~~D 75 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG-----LDNIEFIQGDIED-LPQELEEKFD 75 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT-----STTEEEEESBTTC-GCGCSSTTEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc-----ccccceEEeehhc-cccccCCCee
Confidence 457799999999999999999655677899999999999999999999988 5699999999987 3321 5899
Q ss_pred EEEEcCcCccCCC
Q psy7826 199 IIHVGGSIEDIPE 211 (213)
Q Consensus 199 ~Ii~~~~~~~~p~ 211 (213)
+|+++.+++++++
T Consensus 76 ~I~~~~~l~~~~~ 88 (152)
T PF13847_consen 76 IIISNGVLHHFPD 88 (152)
T ss_dssp EEEEESTGGGTSH
T ss_pred EEEEcCchhhccC
Confidence 9999999888764
No 23
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.57 E-value=3.6e-14 Score=100.96 Aligned_cols=82 Identities=27% Similarity=0.486 Sum_probs=67.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCC-CCCCCCCCCcCEE
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDG-RKGYLDEAPYDII 200 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~-~~~~~~~~~fD~I 200 (213)
|+.+|||+|||+|..+..+++.. +..+|+|+|+|+.+++.+++++...+. .++++++++|+ .. .....+||+|
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~-~~~~~~~D~v 74 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGL----SDRITFVQGDAEFD-PDFLEPFDLV 74 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTT----TTTEEEEESCCHGG-TTTSSCEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCC----CCCeEEEECccccC-cccCCCCCEE
Confidence 57899999999999999999964 568999999999999999999965554 57999999999 33 2223479999
Q ss_pred EEcC-cCccC
Q psy7826 201 HVGG-SIEDI 209 (213)
Q Consensus 201 i~~~-~~~~~ 209 (213)
++.. +.+++
T Consensus 75 ~~~~~~~~~~ 84 (112)
T PF12847_consen 75 ICSGFTLHFL 84 (112)
T ss_dssp EECSGSGGGC
T ss_pred EECCCccccc
Confidence 9999 54433
No 24
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.54 E-value=1.3e-13 Score=110.59 Aligned_cols=96 Identities=20% Similarity=0.416 Sum_probs=80.0
Q ss_pred HHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCC
Q psy7826 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 189 (213)
Q Consensus 110 ~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~ 189 (213)
..++..+ .+.++.+|||+|||+|..+..+++.+++.++|+|+|+++.+++.+++++...+ .++++++++|...
T Consensus 35 ~~~l~~l--~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~ 107 (231)
T TIGR02752 35 KDTMKRM--NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG-----LHNVELVHGNAME 107 (231)
T ss_pred HHHHHhc--CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC-----CCceEEEEechhc
Confidence 3345555 46778999999999999999999987677899999999999999999998777 5689999999975
Q ss_pred CCCCCCCcCEEEEcCcCccCCCC
Q psy7826 190 GYLDEAPYDIIHVGGSIEDIPEG 212 (213)
Q Consensus 190 ~~~~~~~fD~Ii~~~~~~~~p~~ 212 (213)
...+.++||+|+++.+++++++.
T Consensus 108 ~~~~~~~fD~V~~~~~l~~~~~~ 130 (231)
T TIGR02752 108 LPFDDNSFDYVTIGFGLRNVPDY 130 (231)
T ss_pred CCCCCCCccEEEEecccccCCCH
Confidence 43345689999999999888753
No 25
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.51 E-value=2.1e-13 Score=111.59 Aligned_cols=90 Identities=24% Similarity=0.389 Sum_probs=74.2
Q ss_pred hCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhh--CCCCCccCCCeEEEEcCCCCCCCCCCC
Q psy7826 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS--GNPEFVKDGRIKFVLGDGRKGYLDEAP 196 (213)
Q Consensus 119 ~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~--~gl~~~~~~~v~~~~~d~~~~~~~~~~ 196 (213)
.+.++.+|||+|||+|..+..+++.+++.++|+|+|+|++|++.|+++... .+. ..+++++++|+.....++++
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~----~~~i~~~~~d~~~lp~~~~s 145 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSC----YKNIEWIEGDATDLPFDDCY 145 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhcc----CCCeEEEEcccccCCCCCCC
Confidence 466788999999999999999998876667999999999999999877531 111 35899999999864445568
Q ss_pred cCEEEEcCcCccCCCC
Q psy7826 197 YDIIHVGGSIEDIPEG 212 (213)
Q Consensus 197 fD~Ii~~~~~~~~p~~ 212 (213)
||+|+++.++++++++
T Consensus 146 fD~V~~~~~l~~~~d~ 161 (261)
T PLN02233 146 FDAITMGYGLRNVVDR 161 (261)
T ss_pred EeEEEEecccccCCCH
Confidence 9999999999998864
No 26
>PLN02244 tocopherol O-methyltransferase
Probab=99.50 E-value=3.7e-13 Score=114.07 Aligned_cols=85 Identities=24% Similarity=0.382 Sum_probs=74.0
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEE
Q psy7826 121 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 200 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~I 200 (213)
.++.+|||+|||+|..+..+++..+ .+|+|+|+|+.+++.++++.+..++ .++++++++|+.....++++||+|
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g--~~v~gvD~s~~~i~~a~~~~~~~g~----~~~v~~~~~D~~~~~~~~~~FD~V 190 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYG--ANVKGITLSPVQAARANALAAAQGL----SDKVSFQVADALNQPFEDGQFDLV 190 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEEcCcccCCCCCCCccEE
Confidence 5678999999999999999999753 6999999999999999999888774 467999999997644445689999
Q ss_pred EEcCcCccCCC
Q psy7826 201 HVGGSIEDIPE 211 (213)
Q Consensus 201 i~~~~~~~~p~ 211 (213)
++..+++|+++
T Consensus 191 ~s~~~~~h~~d 201 (340)
T PLN02244 191 WSMESGEHMPD 201 (340)
T ss_pred EECCchhccCC
Confidence 99999999986
No 27
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=7.8e-13 Score=109.03 Aligned_cols=114 Identities=21% Similarity=0.245 Sum_probs=87.5
Q ss_pred CCCCCCCccccCCCCccCcHHHHHHHHHHHhhhCCCCC-EEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHH
Q psy7826 87 WRPYANCITNIGYGAHMQAPFQQAMVLDDLSEELTEGK-KVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATH 165 (213)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 165 (213)
...|....+.+..+..+++|.+...+-..+. ...... +|||+|||+|..+..++... +..+|+|+|+|+.+++.|++
T Consensus 75 ~~~f~gl~~~v~~~vliPr~dTe~Lve~~l~-~~~~~~~~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~ 152 (280)
T COG2890 75 SAEFGGLRFKVDEGVLIPRPDTELLVEAALA-LLLQLDKRILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARE 152 (280)
T ss_pred cCeecceeeeeCCCceecCCchHHHHHHHHH-hhhhcCCcEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHH
Confidence 4455555666777888888888765544331 122222 79999999999999999995 77899999999999999999
Q ss_pred HHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEEEcCcCccCCC
Q psy7826 166 NVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211 (213)
Q Consensus 166 ~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~p~ 211 (213)
|+..+| ..++.++++|....... +||+|++|. +++|.
T Consensus 153 Na~~~~-----l~~~~~~~~dlf~~~~~--~fDlIVsNP--PYip~ 189 (280)
T COG2890 153 NAERNG-----LVRVLVVQSDLFEPLRG--KFDLIVSNP--PYIPA 189 (280)
T ss_pred HHHHcC-----CccEEEEeeecccccCC--ceeEEEeCC--CCCCC
Confidence 999998 45677777787765443 899999995 55654
No 28
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.47 E-value=3.4e-13 Score=109.92 Aligned_cols=91 Identities=25% Similarity=0.358 Sum_probs=78.5
Q ss_pred HHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCC
Q psy7826 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 189 (213)
Q Consensus 110 ~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~ 189 (213)
..+++.+ .++||++|||+|||.|..+.++|+..+ .+|+|+++|+++.+.+++.++..|+ ..+++++..|..+
T Consensus 62 ~~~~~kl--~L~~G~~lLDiGCGWG~l~~~aA~~y~--v~V~GvTlS~~Q~~~~~~r~~~~gl----~~~v~v~l~d~rd 133 (283)
T COG2230 62 DLILEKL--GLKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEEQLAYAEKRIAARGL----EDNVEVRLQDYRD 133 (283)
T ss_pred HHHHHhc--CCCCCCEEEEeCCChhHHHHHHHHHcC--CEEEEeeCCHHHHHHHHHHHHHcCC----CcccEEEeccccc
Confidence 3455556 689999999999999999999999973 7999999999999999999999996 4589999999876
Q ss_pred CCCCCCCcCEEEEcCcCccCCC
Q psy7826 190 GYLDEAPYDIIHVGGSIEDIPE 211 (213)
Q Consensus 190 ~~~~~~~fD~Ii~~~~~~~~p~ 211 (213)
.. ++||.|++.++++|+-.
T Consensus 134 ~~---e~fDrIvSvgmfEhvg~ 152 (283)
T COG2230 134 FE---EPFDRIVSVGMFEHVGK 152 (283)
T ss_pred cc---cccceeeehhhHHHhCc
Confidence 33 34999999999998754
No 29
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.47 E-value=6.4e-13 Score=109.34 Aligned_cols=131 Identities=23% Similarity=0.294 Sum_probs=88.8
Q ss_pred CCCCcccccchhhhccCccccCCCCchhHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCCCCCCCCccccCCCCccCc
Q psy7826 26 NKPNNYENNLDVQVCMGKHKGTKMEKKPMEYLVEHLKETLFIESELPYKAMLAVDRGHYTTWRPYANCITNIGYGAHMQA 105 (213)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (213)
..++||+|+++.+ ..+...++.+ ++|++..++. .. .+.|.
T Consensus 29 ~a~~Gy~~ll~~~-----~~~~~~~~d~-~~~~~ar~~f------------l~--~g~y~-------------------- 68 (272)
T PRK11088 29 CAKEGYVNLLPVQ-----HKRSKDPGDN-KEMMQARRAF------------LD--AGHYQ-------------------- 68 (272)
T ss_pred cccCceEEecccc-----ccCCCCCCcC-HHHHHHHHHH------------HH--CCChH--------------------
Confidence 4678999999887 5566666777 6776653321 00 11111
Q ss_pred HHHHHHHHHHHhhh-CCCCCEEEEEcCCccHHHHHHHHHcCCC--CEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEE
Q psy7826 106 PFQQAMVLDDLSEE-LTEGKKVLDIGSGNGYFTALLAWCVGKT--GKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKF 182 (213)
Q Consensus 106 ~~~~~~~~~~l~~~-~~~~~~vLDiG~G~G~~t~~la~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~ 182 (213)
.....+...+... ..+..+|||+|||+|+++..+++.++.. ..++|+|+|+.+++.|+++ .+++.+
T Consensus 69 -~l~~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~----------~~~~~~ 137 (272)
T PRK11088 69 -PLRDAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR----------YPQVTF 137 (272)
T ss_pred -HHHHHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh----------CCCCeE
Confidence 1112232333211 2345789999999999999999875321 3799999999999999876 357889
Q ss_pred EEcCCCCCCCCCCCcCEEEEcCcCc
Q psy7826 183 VLGDGRKGYLDEAPYDIIHVGGSIE 207 (213)
Q Consensus 183 ~~~d~~~~~~~~~~fD~Ii~~~~~~ 207 (213)
.++|+.....++++||+|++..+..
T Consensus 138 ~~~d~~~lp~~~~sfD~I~~~~~~~ 162 (272)
T PRK11088 138 CVASSHRLPFADQSLDAIIRIYAPC 162 (272)
T ss_pred EEeecccCCCcCCceeEEEEecCCC
Confidence 9999876444456899999877543
No 30
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.46 E-value=7.1e-13 Score=104.58 Aligned_cols=81 Identities=19% Similarity=0.282 Sum_probs=67.9
Q ss_pred hCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcC
Q psy7826 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYD 198 (213)
Q Consensus 119 ~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD 198 (213)
...++.+|||+|||+|..+..+++.. +..+++|+|+|+.+++.|+++. +++.+.++|+..++ ..++||
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~----------~~~~~~~~d~~~~~-~~~sfD 107 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYL----------PNINIIQGSLFDPF-KDNFFD 107 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhC----------CCCcEEEeeccCCC-CCCCEE
Confidence 35667799999999999999999875 5579999999999999998873 35678889987743 446899
Q ss_pred EEEEcCcCccCCC
Q psy7826 199 IIHVGGSIEDIPE 211 (213)
Q Consensus 199 ~Ii~~~~~~~~p~ 211 (213)
+|+++.+++|+++
T Consensus 108 ~V~~~~vL~hl~p 120 (204)
T TIGR03587 108 LVLTKGVLIHINP 120 (204)
T ss_pred EEEECChhhhCCH
Confidence 9999999999864
No 31
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.45 E-value=1.3e-12 Score=101.75 Aligned_cols=96 Identities=26% Similarity=0.349 Sum_probs=78.7
Q ss_pred cCcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEE
Q psy7826 103 MQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKF 182 (213)
Q Consensus 103 ~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~ 182 (213)
++.+.+.+.+++.+ .+.++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.+++++++++ ..++++
T Consensus 14 ~~~~~~r~~~~~~l--~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~-----~~~i~~ 85 (187)
T PRK08287 14 MTKEEVRALALSKL--ELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFG-----CGNIDI 85 (187)
T ss_pred CchHHHHHHHHHhc--CCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhC-----CCCeEE
Confidence 55666666677777 46788899999999999999999984 66899999999999999999998887 467999
Q ss_pred EEcCCCCCCCCCCCcCEEEEcCcCcc
Q psy7826 183 VLGDGRKGYLDEAPYDIIHVGGSIED 208 (213)
Q Consensus 183 ~~~d~~~~~~~~~~fD~Ii~~~~~~~ 208 (213)
+.+|..... ..+||+|+++....+
T Consensus 86 ~~~d~~~~~--~~~~D~v~~~~~~~~ 109 (187)
T PRK08287 86 IPGEAPIEL--PGKADAIFIGGSGGN 109 (187)
T ss_pred EecCchhhc--CcCCCEEEECCCccC
Confidence 999985433 247999999876544
No 32
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=6.6e-13 Score=105.78 Aligned_cols=99 Identities=27% Similarity=0.411 Sum_probs=85.8
Q ss_pred CCCccCcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCC
Q psy7826 99 YGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 178 (213)
Q Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~ 178 (213)
.+.++..|...++++..+ .+.+|++|+|.|+|+|.+|++|+..+++.|+|+++|+.++..+.|++|++..++ .+
T Consensus 73 R~tQiIyPKD~~~I~~~~--gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l----~d 146 (256)
T COG2519 73 RRTQIIYPKDAGYIVARL--GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL----GD 146 (256)
T ss_pred CCCceecCCCHHHHHHHc--CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc----cc
Confidence 345566666678888888 699999999999999999999999989999999999999999999999999886 55
Q ss_pred CeEEEEcCCCCCCCCCCCcCEEEEcC
Q psy7826 179 RIKFVLGDGRKGYLDEAPYDIIHVGG 204 (213)
Q Consensus 179 ~v~~~~~d~~~~~~~~~~fD~Ii~~~ 204 (213)
++++..+|+.+..... .||+|++|.
T Consensus 147 ~v~~~~~Dv~~~~~~~-~vDav~LDm 171 (256)
T COG2519 147 RVTLKLGDVREGIDEE-DVDAVFLDL 171 (256)
T ss_pred ceEEEecccccccccc-ccCEEEEcC
Confidence 6999999998755443 899999984
No 33
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.44 E-value=7e-13 Score=108.91 Aligned_cols=91 Identities=25% Similarity=0.309 Sum_probs=70.0
Q ss_pred HHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCC
Q psy7826 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 189 (213)
Q Consensus 110 ~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~ 189 (213)
..+++.+ .+++|++|||+|||.|..+.++++..| ++|+|+.+|++..+.+++.+++.|+ .+++++...|..+
T Consensus 52 ~~~~~~~--~l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS~~Q~~~a~~~~~~~gl----~~~v~v~~~D~~~ 123 (273)
T PF02353_consen 52 DLLCEKL--GLKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITLSEEQAEYARERIREAGL----EDRVEVRLQDYRD 123 (273)
T ss_dssp HHHHTTT--T--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTS----SSTEEEEES-GGG
T ss_pred HHHHHHh--CCCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEEeeccc
Confidence 3445555 588999999999999999999999974 7999999999999999999999996 6789999999875
Q ss_pred CCCCCCCcCEEEEcCcCccCCC
Q psy7826 190 GYLDEAPYDIIHVGGSIEDIPE 211 (213)
Q Consensus 190 ~~~~~~~fD~Ii~~~~~~~~p~ 211 (213)
. + .+||.|++..+++|+..
T Consensus 124 ~-~--~~fD~IvSi~~~Ehvg~ 142 (273)
T PF02353_consen 124 L-P--GKFDRIVSIEMFEHVGR 142 (273)
T ss_dssp ------S-SEEEEESEGGGTCG
T ss_pred c-C--CCCCEEEEEechhhcCh
Confidence 2 2 28999999999999853
No 34
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.43 E-value=3.1e-12 Score=98.15 Aligned_cols=89 Identities=24% Similarity=0.362 Sum_probs=72.1
Q ss_pred HHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCC
Q psy7826 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 189 (213)
Q Consensus 110 ~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~ 189 (213)
..+++.+. ..++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.+++|+..+++ .+++++.+|...
T Consensus 21 ~lL~~~l~--~~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~-----~~v~~~~~d~~~ 92 (170)
T PF05175_consen 21 RLLLDNLP--KHKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGL-----ENVEVVQSDLFE 92 (170)
T ss_dssp HHHHHHHH--HHTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTC-----TTEEEEESSTTT
T ss_pred HHHHHHHh--hccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCc-----cccccccccccc
Confidence 45666664 2367899999999999999999984 667899999999999999999999984 459999999987
Q ss_pred CCCCCCCcCEEEEcCcCc
Q psy7826 190 GYLDEAPYDIIHVGGSIE 207 (213)
Q Consensus 190 ~~~~~~~fD~Ii~~~~~~ 207 (213)
..+ ..+||+|++|...+
T Consensus 93 ~~~-~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 93 ALP-DGKFDLIVSNPPFH 109 (170)
T ss_dssp TCC-TTCEEEEEE---SB
T ss_pred ccc-ccceeEEEEccchh
Confidence 555 46899999997643
No 35
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.43 E-value=3.3e-12 Score=92.13 Aligned_cols=95 Identities=28% Similarity=0.324 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEc
Q psy7826 106 PFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLG 185 (213)
Q Consensus 106 ~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~ 185 (213)
......+++.+ .+.++.+|||+|||+|..+..+++.. +..+++++|+++.+++.++++++..+ ..+++++.+
T Consensus 5 ~~~~~~~~~~~--~~~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~~ 76 (124)
T TIGR02469 5 REVRALTLSKL--RLRPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFG-----VSNIVIVEG 76 (124)
T ss_pred HHHHHHHHHHc--CCCCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhC-----CCceEEEec
Confidence 34455566666 46677899999999999999999986 55799999999999999999998877 467899999
Q ss_pred CCCCCC-CCCCCcCEEEEcCcCcc
Q psy7826 186 DGRKGY-LDEAPYDIIHVGGSIED 208 (213)
Q Consensus 186 d~~~~~-~~~~~fD~Ii~~~~~~~ 208 (213)
|+.... ....+||.|++......
T Consensus 77 ~~~~~~~~~~~~~D~v~~~~~~~~ 100 (124)
T TIGR02469 77 DAPEALEDSLPEPDRVFIGGSGGL 100 (124)
T ss_pred cccccChhhcCCCCEEEECCcchh
Confidence 876322 12247999999876543
No 36
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.43 E-value=2.8e-12 Score=103.40 Aligned_cols=102 Identities=25% Similarity=0.367 Sum_probs=78.5
Q ss_pred CCCCccCcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccC
Q psy7826 98 GYGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKD 177 (213)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~ 177 (213)
..+.++..|...+.++..+ ++.||.+|||.|+|+|++|..|++.++|.|+|+++|+.+++.+.|++|++.+|+ .
T Consensus 18 ~rrtQIiYpkD~~~I~~~l--~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl----~ 91 (247)
T PF08704_consen 18 PRRTQIIYPKDISYILMRL--DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL----D 91 (247)
T ss_dssp -SSS----HHHHHHHHHHT--T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC----C
T ss_pred cCCcceeeCchHHHHHHHc--CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC----C
Confidence 3455677788888888888 799999999999999999999999999999999999999999999999999996 6
Q ss_pred CCeEEEEcCCC-CCCCC--CCCcCEEEEcCc
Q psy7826 178 GRIKFVLGDGR-KGYLD--EAPYDIIHVGGS 205 (213)
Q Consensus 178 ~~v~~~~~d~~-~~~~~--~~~fD~Ii~~~~ 205 (213)
.+|++.+.|+. +.+.. ...+|.|++|..
T Consensus 92 ~~v~~~~~Dv~~~g~~~~~~~~~DavfLDlp 122 (247)
T PF08704_consen 92 DNVTVHHRDVCEEGFDEELESDFDAVFLDLP 122 (247)
T ss_dssp TTEEEEES-GGCG--STT-TTSEEEEEEESS
T ss_pred CCceeEecceecccccccccCcccEEEEeCC
Confidence 78999999996 44422 247999999864
No 37
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.42 E-value=1.1e-12 Score=102.98 Aligned_cols=98 Identities=27% Similarity=0.406 Sum_probs=78.8
Q ss_pred cCcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEE
Q psy7826 103 MQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKF 182 (213)
Q Consensus 103 ~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~ 182 (213)
++..+.....+..+ .+.++.+|||+|||+|.++..+++.+++.++|+++|+++.+++.++++++.+++ ..++.+
T Consensus 23 ~t~~~~r~~~l~~l--~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~----~~~v~~ 96 (198)
T PRK00377 23 MTKEEIRALALSKL--RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV----LNNIVL 96 (198)
T ss_pred CCHHHHHHHHHHHc--CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC----CCCeEE
Confidence 55566666556666 578899999999999999999998876667999999999999999999998874 468999
Q ss_pred EEcCCCCCCCC-CCCcCEEEEcCcC
Q psy7826 183 VLGDGRKGYLD-EAPYDIIHVGGSI 206 (213)
Q Consensus 183 ~~~d~~~~~~~-~~~fD~Ii~~~~~ 206 (213)
+.+|..+..+. ...||+|+++...
T Consensus 97 ~~~d~~~~l~~~~~~~D~V~~~~~~ 121 (198)
T PRK00377 97 IKGEAPEILFTINEKFDRIFIGGGS 121 (198)
T ss_pred EEechhhhHhhcCCCCCEEEECCCc
Confidence 99998643222 2479999997643
No 38
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.42 E-value=1.8e-12 Score=100.86 Aligned_cols=78 Identities=22% Similarity=0.260 Sum_probs=67.9
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCE
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDI 199 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~ 199 (213)
++++.+|||+|||+|..+..+++.. +.++|+++|+++.+++.++++.++.+ .++++++++|+.+... .++||+
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~-----l~~i~~~~~d~~~~~~-~~~fDl 115 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELG-----LKNVTVVHGRAEEFGQ-EEKFDV 115 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcC-----CCCEEEEeccHhhCCC-CCCccE
Confidence 4568899999999999999999874 66899999999999999999999988 4569999999976433 568999
Q ss_pred EEEcC
Q psy7826 200 IHVGG 204 (213)
Q Consensus 200 Ii~~~ 204 (213)
|+++.
T Consensus 116 V~~~~ 120 (187)
T PRK00107 116 VTSRA 120 (187)
T ss_pred EEEcc
Confidence 99975
No 39
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.41 E-value=3.1e-12 Score=105.85 Aligned_cols=113 Identities=15% Similarity=0.169 Sum_probs=87.2
Q ss_pred CCCCCCCccccCCCCccCcHHHHHHHHHHHhhh--CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHH
Q psy7826 87 WRPYANCITNIGYGAHMQAPFQQAMVLDDLSEE--LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRAT 164 (213)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~ 164 (213)
...+....+.++.+..++.+.....+...+... ..++.+|||+|||+|.++..+++.. +..+++|+|+|+.+++.|+
T Consensus 84 ~~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~ 162 (284)
T TIGR03533 84 EAWFAGLEFYVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAE 162 (284)
T ss_pred CCeecCcEEEECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHH
Confidence 444555556677778888877666555544311 2345789999999999999999985 6679999999999999999
Q ss_pred HHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEEEcCc
Q psy7826 165 HNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGS 205 (213)
Q Consensus 165 ~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~ 205 (213)
+|++.+++ ..+++++++|+....+ ..+||+|++|..
T Consensus 163 ~n~~~~~~----~~~i~~~~~D~~~~~~-~~~fD~Iv~NPP 198 (284)
T TIGR03533 163 INIERHGL----EDRVTLIQSDLFAALP-GRKYDLIVSNPP 198 (284)
T ss_pred HHHHHcCC----CCcEEEEECchhhccC-CCCccEEEECCC
Confidence 99998884 3579999999875443 347999999853
No 40
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.41 E-value=2.2e-12 Score=106.07 Aligned_cols=88 Identities=34% Similarity=0.520 Sum_probs=75.5
Q ss_pred hCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcC
Q psy7826 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYD 198 (213)
Q Consensus 119 ~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD 198 (213)
.+.++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.|+++....+ ..+++++.+|+.....++++||
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g-----~~~v~~~~~d~~~l~~~~~~fD 148 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG-----YTNVEFRLGEIEALPVADNSVD 148 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC-----CCCEEEEEcchhhCCCCCCcee
Confidence 36788999999999999998888887777799999999999999999998887 5689999999875333345899
Q ss_pred EEEEcCcCccCCC
Q psy7826 199 IIHVGGSIEDIPE 211 (213)
Q Consensus 199 ~Ii~~~~~~~~p~ 211 (213)
+|+++.++++.|+
T Consensus 149 ~Vi~~~v~~~~~d 161 (272)
T PRK11873 149 VIISNCVINLSPD 161 (272)
T ss_pred EEEEcCcccCCCC
Confidence 9999999888775
No 41
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.41 E-value=8.7e-13 Score=102.19 Aligned_cols=80 Identities=25% Similarity=0.289 Sum_probs=67.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEE
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIH 201 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii 201 (213)
++.+|||+|||+|..+..++.. .+.++|+++|.++.+++.++++.++.+ .++++++++|+.+. ...++||+|+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~-----~~~i~~i~~d~~~~-~~~~~fD~I~ 114 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELG-----LNNVEIVNGRAEDF-QHEEQFDVIT 114 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhC-----CCCeEEEecchhhc-cccCCccEEE
Confidence 4789999999999999999877 466899999999999999999999888 56799999999763 3346899999
Q ss_pred EcCcCccC
Q psy7826 202 VGGSIEDI 209 (213)
Q Consensus 202 ~~~~~~~~ 209 (213)
++. ++++
T Consensus 115 s~~-~~~~ 121 (181)
T TIGR00138 115 SRA-LASL 121 (181)
T ss_pred ehh-hhCH
Confidence 986 4443
No 42
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.40 E-value=2.4e-13 Score=107.50 Aligned_cols=83 Identities=22% Similarity=0.382 Sum_probs=71.8
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEE
Q psy7826 121 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 200 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~I 200 (213)
-++.+|||+|||-|.++..+|+. | .+|+|+|+++..++.|+......|+ ++.+.+..+++.....++||+|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~-G--a~VtgiD~se~~I~~Ak~ha~e~gv------~i~y~~~~~edl~~~~~~FDvV 128 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL-G--ASVTGIDASEKPIEVAKLHALESGV------NIDYRQATVEDLASAGGQFDVV 128 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC-C--CeeEEecCChHHHHHHHHhhhhccc------cccchhhhHHHHHhcCCCccEE
Confidence 47889999999999999999998 6 7999999999999999999988774 4677777776544444799999
Q ss_pred EEcCcCccCCCC
Q psy7826 201 HVGGSIEDIPEG 212 (213)
Q Consensus 201 i~~~~~~~~p~~ 212 (213)
++..+++|+|++
T Consensus 129 ~cmEVlEHv~dp 140 (243)
T COG2227 129 TCMEVLEHVPDP 140 (243)
T ss_pred EEhhHHHccCCH
Confidence 999999999986
No 43
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.40 E-value=5e-13 Score=103.73 Aligned_cols=80 Identities=26% Similarity=0.449 Sum_probs=71.5
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCE
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDI 199 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~ 199 (213)
+.+..+|.|+|||+|..|..|+++. |...|+|+|-|++|++.|+++ .++++|..+|+.. +.+..++|+
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~r----------lp~~~f~~aDl~~-w~p~~~~dl 95 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQR----------LPDATFEEADLRT-WKPEQPTDL 95 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHh----------CCCCceecccHhh-cCCCCccch
Confidence 4556789999999999999999998 778999999999999999877 5789999999976 555568999
Q ss_pred EEEcCcCccCCC
Q psy7826 200 IHVGGSIEDIPE 211 (213)
Q Consensus 200 Ii~~~~~~~~p~ 211 (213)
+++|++++++|+
T Consensus 96 lfaNAvlqWlpd 107 (257)
T COG4106 96 LFANAVLQWLPD 107 (257)
T ss_pred hhhhhhhhhccc
Confidence 999999999997
No 44
>KOG1122|consensus
Probab=99.40 E-value=5.5e-13 Score=112.41 Aligned_cols=164 Identities=18% Similarity=0.156 Sum_probs=115.5
Q ss_pred ccccceeeeccCCCCcccccchhhhccCccccCCCCchhHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCCC-CCCCC
Q psy7826 15 LATGQEIFGINNKPNNYENNLDVQVCMGKHKGTKMEKKPMEYLVEHLKETLFIESELPYKAMLAVDRGHYTTWR-PYANC 93 (213)
Q Consensus 15 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 93 (213)
..+..+.+++|+++.++ ++|.|++++-+.++...|...|+..++- +.+...+ ...++
T Consensus 151 ~~ev~~~~e~~~~~rp~------------tir~ntlk~~rrd~~~~L~nrgv~~~pl----------~~ws~vgl~v~~s 208 (460)
T KOG1122|consen 151 LVEVYEFLEANEKPRPV------------TIRTNTLKTRRRDLAVELSNRGVNLDPL----------GKWSKVGLVVFDS 208 (460)
T ss_pred HHHHHHHHHhhcCCCCe------------eEEecccchhhhhHHHHHHhcccCcccc----------cccccceEEEecC
Confidence 45566777888888666 9999999999999999999988633211 1111100 00011
Q ss_pred ccccC------CCCccCcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHH
Q psy7826 94 ITNIG------YGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNV 167 (213)
Q Consensus 94 ~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~ 167 (213)
..+++ .|..+.|.......+..+ .+++|.+|||+||++|++|.++|..+.+.|.|++.|.+..+++..+.|+
T Consensus 209 ~vpigat~e~lag~~~LQ~~sS~Lpv~aL--~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~ 286 (460)
T KOG1122|consen 209 VVPIGATPEYLAGHYMLQNASSFLPVMAL--DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANL 286 (460)
T ss_pred ccccCCchhhcccceeeccCcccceeeec--CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHH
Confidence 11111 122222222112222233 5899999999999999999999999988999999999999999999999
Q ss_pred hhCCCCCccCCCeEEEEcCCCCC---CCCCCCcCEEEEcCcCcc
Q psy7826 168 ISGNPEFVKDGRIKFVLGDGRKG---YLDEAPYDIIHVGGSIED 208 (213)
Q Consensus 168 ~~~gl~~~~~~~v~~~~~d~~~~---~~~~~~fD~Ii~~~~~~~ 208 (213)
.++| ..+..+...|..+. ... ++||+|+.++.+.-
T Consensus 287 ~rlG-----v~ntiv~n~D~~ef~~~~~~-~~fDRVLLDAPCSG 324 (460)
T KOG1122|consen 287 HRLG-----VTNTIVSNYDGREFPEKEFP-GSFDRVLLDAPCSG 324 (460)
T ss_pred HHhC-----CCceEEEccCcccccccccC-cccceeeecCCCCC
Confidence 9999 67877888887632 122 27999999998765
No 45
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.40 E-value=3.1e-12 Score=103.89 Aligned_cols=86 Identities=16% Similarity=0.278 Sum_probs=72.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHc-CCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcC
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCV-GKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYD 198 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD 198 (213)
+.++.+|||+|||+|..+..+++.+ .+..+++|+|+|+.|++.|++++...+. ..+++++++|+..... ..+|
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~----~~~v~~~~~d~~~~~~--~~~D 127 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA----PTPVDVIEGDIRDIAI--ENAS 127 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC----CCCeEEEeCChhhCCC--CCCC
Confidence 5678899999999999999998853 3567999999999999999999988764 4579999999875332 3589
Q ss_pred EEEEcCcCccCCC
Q psy7826 199 IIHVGGSIEDIPE 211 (213)
Q Consensus 199 ~Ii~~~~~~~~p~ 211 (213)
+|+++.+++++++
T Consensus 128 ~vv~~~~l~~l~~ 140 (247)
T PRK15451 128 MVVLNFTLQFLEP 140 (247)
T ss_pred EEehhhHHHhCCH
Confidence 9999999988864
No 46
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.40 E-value=8.3e-13 Score=92.54 Aligned_cols=80 Identities=25% Similarity=0.506 Sum_probs=62.7
Q ss_pred EEEEcCCccHHHHHHHHHc--CCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEEEc
Q psy7826 126 VLDIGSGNGYFTALLAWCV--GKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVG 203 (213)
Q Consensus 126 vLDiG~G~G~~t~~la~~~--~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 203 (213)
|||+|||+|..+..+++.+ +++.+++|+|+|+++++.++++....+ .+++++++|+.......++||+|++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~------~~~~~~~~D~~~l~~~~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG------PKVRFVQADARDLPFSDGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT------TTSEEEESCTTCHHHHSSSEEEEEE-
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC------CceEEEECCHhHCcccCCCeeEEEEc
Confidence 7999999999999999986 334699999999999999999988765 38999999998644445689999994
Q ss_pred -CcCccCCC
Q psy7826 204 -GSIEDIPE 211 (213)
Q Consensus 204 -~~~~~~p~ 211 (213)
.+++|+++
T Consensus 75 ~~~~~~~~~ 83 (101)
T PF13649_consen 75 GLSLHHLSP 83 (101)
T ss_dssp TTGGGGSSH
T ss_pred CCccCCCCH
Confidence 54888764
No 47
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.39 E-value=1.7e-12 Score=105.77 Aligned_cols=85 Identities=21% Similarity=0.344 Sum_probs=69.9
Q ss_pred HHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCC
Q psy7826 111 MVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKG 190 (213)
Q Consensus 111 ~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~ 190 (213)
.+++.+ ...++.+|||+|||+|..+..+++.. +..+|+|+|+|+.+++.++++ +++++++|+...
T Consensus 20 ~ll~~l--~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~------------~~~~~~~d~~~~ 84 (255)
T PRK14103 20 DLLARV--GAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER------------GVDARTGDVRDW 84 (255)
T ss_pred HHHHhC--CCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc------------CCcEEEcChhhC
Confidence 345555 35677899999999999999999985 667999999999999998653 467889998754
Q ss_pred CCCCCCcCEEEEcCcCccCCC
Q psy7826 191 YLDEAPYDIIHVGGSIEDIPE 211 (213)
Q Consensus 191 ~~~~~~fD~Ii~~~~~~~~p~ 211 (213)
. ..++||+|+++.+++++|+
T Consensus 85 ~-~~~~fD~v~~~~~l~~~~d 104 (255)
T PRK14103 85 K-PKPDTDVVVSNAALQWVPE 104 (255)
T ss_pred C-CCCCceEEEEehhhhhCCC
Confidence 3 3468999999999999986
No 48
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.39 E-value=3.6e-12 Score=100.05 Aligned_cols=90 Identities=22% Similarity=0.229 Sum_probs=73.0
Q ss_pred HHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCC
Q psy7826 111 MVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKG 190 (213)
Q Consensus 111 ~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~ 190 (213)
.+++.+ ...++.+|||+|||+|..+..+++. + .+|+|+|+|+.+++.++++....+ ..++++.+.|+...
T Consensus 21 ~l~~~l--~~~~~~~vLDiGcG~G~~a~~La~~-g--~~V~gvD~S~~~i~~a~~~~~~~~-----~~~v~~~~~d~~~~ 90 (197)
T PRK11207 21 EVLEAV--KVVKPGKTLDLGCGNGRNSLYLAAN-G--FDVTAWDKNPMSIANLERIKAAEN-----LDNLHTAVVDLNNL 90 (197)
T ss_pred HHHHhc--ccCCCCcEEEECCCCCHHHHHHHHC-C--CEEEEEeCCHHHHHHHHHHHHHcC-----CCcceEEecChhhC
Confidence 344455 2456689999999999999999986 3 599999999999999999988877 46789999998753
Q ss_pred CCCCCCcCEEEEcCcCccCCC
Q psy7826 191 YLDEAPYDIIHVGGSIEDIPE 211 (213)
Q Consensus 191 ~~~~~~fD~Ii~~~~~~~~p~ 211 (213)
..+ .+||+|++..+++++++
T Consensus 91 ~~~-~~fD~I~~~~~~~~~~~ 110 (197)
T PRK11207 91 TFD-GEYDFILSTVVLMFLEA 110 (197)
T ss_pred CcC-CCcCEEEEecchhhCCH
Confidence 333 57999999999887763
No 49
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.38 E-value=8e-12 Score=107.21 Aligned_cols=111 Identities=21% Similarity=0.246 Sum_probs=86.7
Q ss_pred CCCCCCCccccCCCCccCcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHH
Q psy7826 87 WRPYANCITNIGYGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN 166 (213)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~ 166 (213)
...|....+.+..+..++.|.....+...+. .+.++.+|||+|||+|..+..+++.. +..+++|+|+|+.+++.|++|
T Consensus 217 ~~~F~G~~f~V~p~vLIPRpeTE~LVe~aL~-~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreN 294 (423)
T PRK14966 217 VREFYGRRFAVNPNVLIPRPETEHLVEAVLA-RLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKN 294 (423)
T ss_pred eeeecCcEEEeCCCccCCCccHHHHHHHhhh-ccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHH
Confidence 4455666667777888888877665444443 34566799999999999999999874 667999999999999999999
Q ss_pred HhhCCCCCccCCCeEEEEcCCCCC-CCCCCCcCEEEEcCc
Q psy7826 167 VISGNPEFVKDGRIKFVLGDGRKG-YLDEAPYDIIHVGGS 205 (213)
Q Consensus 167 ~~~~gl~~~~~~~v~~~~~d~~~~-~~~~~~fD~Ii~~~~ 205 (213)
+++++ . +++++++|..+. .+..++||+|++|..
T Consensus 295 a~~~g-----~-rV~fi~gDl~e~~l~~~~~FDLIVSNPP 328 (423)
T PRK14966 295 AADLG-----A-RVEFAHGSWFDTDMPSEGKWDIIVSNPP 328 (423)
T ss_pred HHHcC-----C-cEEEEEcchhccccccCCCccEEEECCC
Confidence 98876 3 799999998643 222357999999863
No 50
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.37 E-value=5.4e-12 Score=102.91 Aligned_cols=88 Identities=24% Similarity=0.332 Sum_probs=72.0
Q ss_pred HHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCC
Q psy7826 111 MVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKG 190 (213)
Q Consensus 111 ~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~ 190 (213)
.++..+ .+.++.+|||+|||+|..+..+++.. +.++|+|+|+|+.+++.++++ .+++.++.+|+...
T Consensus 22 ~ll~~~--~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~----------~~~~~~~~~d~~~~ 88 (258)
T PRK01683 22 DLLARV--PLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSR----------LPDCQFVEADIASW 88 (258)
T ss_pred HHHhhC--CCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHh----------CCCCeEEECchhcc
Confidence 344444 35678899999999999999999985 667999999999999999887 34688999998753
Q ss_pred CCCCCCcCEEEEcCcCccCCCC
Q psy7826 191 YLDEAPYDIIHVGGSIEDIPEG 212 (213)
Q Consensus 191 ~~~~~~fD~Ii~~~~~~~~p~~ 212 (213)
.+ ..+||+|+++.+++++++.
T Consensus 89 ~~-~~~fD~v~~~~~l~~~~d~ 109 (258)
T PRK01683 89 QP-PQALDLIFANASLQWLPDH 109 (258)
T ss_pred CC-CCCccEEEEccChhhCCCH
Confidence 33 3589999999999998763
No 51
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.37 E-value=1.7e-12 Score=108.84 Aligned_cols=85 Identities=24% Similarity=0.325 Sum_probs=70.3
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEE
Q psy7826 121 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 200 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~I 200 (213)
.++.+|||+|||+|..+..+++. + .+|+|+|+++.+++.|+++....+. ..+++++++|+.+.....++||+|
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~-g--~~V~GID~s~~~i~~Ar~~~~~~~~----~~~i~~~~~dae~l~~~~~~FD~V 202 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM-G--ATVTGVDAVDKNVKIARLHADMDPV----TSTIEYLCTTAEKLADEGRKFDAV 202 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc-C--CEEEEEeCCHHHHHHHHHHHHhcCc----ccceeEEecCHHHhhhccCCCCEE
Confidence 35679999999999999999875 3 6999999999999999988765442 357999999987533344689999
Q ss_pred EEcCcCccCCCC
Q psy7826 201 HVGGSIEDIPEG 212 (213)
Q Consensus 201 i~~~~~~~~p~~ 212 (213)
++..+++|++++
T Consensus 203 i~~~vLeHv~d~ 214 (322)
T PLN02396 203 LSLEVIEHVANP 214 (322)
T ss_pred EEhhHHHhcCCH
Confidence 999999999874
No 52
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.36 E-value=3.3e-12 Score=104.10 Aligned_cols=85 Identities=24% Similarity=0.290 Sum_probs=71.6
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC-CCCCCcCE
Q psy7826 121 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-LDEAPYDI 199 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~-~~~~~fD~ 199 (213)
.++.+|||+|||+|..+..+++. + .+|+++|+|+.+++.|++++...++ ..+++++++|+.+.. ...++||+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~-g--~~v~~vD~s~~~l~~a~~~~~~~g~----~~~v~~~~~d~~~l~~~~~~~fD~ 115 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL-G--HQVILCDLSAEMIQRAKQAAEAKGV----SDNMQFIHCAAQDIAQHLETPVDL 115 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc-C--CEEEEEECCHHHHHHHHHHHHhcCC----ccceEEEEcCHHHHhhhcCCCCCE
Confidence 45679999999999999999987 3 6999999999999999999988875 468999999986422 22358999
Q ss_pred EEEcCcCccCCCC
Q psy7826 200 IHVGGSIEDIPEG 212 (213)
Q Consensus 200 Ii~~~~~~~~p~~ 212 (213)
|++..++++++++
T Consensus 116 V~~~~vl~~~~~~ 128 (255)
T PRK11036 116 ILFHAVLEWVADP 128 (255)
T ss_pred EEehhHHHhhCCH
Confidence 9999999988764
No 53
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.35 E-value=9.3e-12 Score=104.02 Aligned_cols=112 Identities=14% Similarity=0.169 Sum_probs=85.0
Q ss_pred CCCCCCCccccCCCCccCcHHHHHHHHHHHhhhCC--CCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHH
Q psy7826 87 WRPYANCITNIGYGAHMQAPFQQAMVLDDLSEELT--EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRAT 164 (213)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~ 164 (213)
...|....+.++.+..++.+.+...+...+..... +..+|||+|||+|.++..+++.. +..+|+++|+|+.+++.|+
T Consensus 96 ~~~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~ 174 (307)
T PRK11805 96 EAWFCGLEFYVDERVLVPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAE 174 (307)
T ss_pred cceEcCcEEEECCCCcCCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHH
Confidence 34444455666677777777776555544421122 23689999999999999999985 6679999999999999999
Q ss_pred HHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEEEcC
Q psy7826 165 HNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGG 204 (213)
Q Consensus 165 ~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~ 204 (213)
+|++.+++ ..+++++++|+.+..+. .+||+|++|.
T Consensus 175 ~n~~~~~l----~~~i~~~~~D~~~~l~~-~~fDlIvsNP 209 (307)
T PRK11805 175 INIERHGL----EDRVTLIESDLFAALPG-RRYDLIVSNP 209 (307)
T ss_pred HHHHHhCC----CCcEEEEECchhhhCCC-CCccEEEECC
Confidence 99998884 35799999998754443 4799999984
No 54
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=9e-12 Score=102.41 Aligned_cols=88 Identities=27% Similarity=0.357 Sum_probs=68.0
Q ss_pred HHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCC-eEEEEcCC
Q psy7826 109 QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR-IKFVLGDG 187 (213)
Q Consensus 109 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~-v~~~~~d~ 187 (213)
....++++....+++.+|||+|||+|.++...++. |. .+++|+|+++.+++.+++|++.+++ +. +.....+.
T Consensus 149 T~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kL-GA-~~v~g~DiDp~AV~aa~eNa~~N~v-----~~~~~~~~~~~ 221 (300)
T COG2264 149 TSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKL-GA-KKVVGVDIDPQAVEAARENARLNGV-----ELLVQAKGFLL 221 (300)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHc-CC-ceEEEecCCHHHHHHHHHHHHHcCC-----chhhhcccccc
Confidence 35666777656789999999999999999998887 64 4899999999999999999999984 32 33333333
Q ss_pred CCCCCCCCCcCEEEEcC
Q psy7826 188 RKGYLDEAPYDIIHVGG 204 (213)
Q Consensus 188 ~~~~~~~~~fD~Ii~~~ 204 (213)
.. .+..++||+|++|-
T Consensus 222 ~~-~~~~~~~DvIVANI 237 (300)
T COG2264 222 LE-VPENGPFDVIVANI 237 (300)
T ss_pred hh-hcccCcccEEEehh
Confidence 33 33346899999984
No 55
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.33 E-value=2.3e-11 Score=98.23 Aligned_cols=86 Identities=17% Similarity=0.283 Sum_probs=71.5
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcC
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYD 198 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD 198 (213)
..++.+|||+|||+|..+..+++.+. +..+++|+|+|+.+++.|++++...+. ..+++++++|+..... ..+|
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~----~~~v~~~~~d~~~~~~--~~~d 124 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS----EIPVEILCNDIRHVEI--KNAS 124 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC----CCCeEEEECChhhCCC--CCCC
Confidence 45778999999999999999998752 467999999999999999999887653 3579999999975433 2589
Q ss_pred EEEEcCcCccCCC
Q psy7826 199 IIHVGGSIEDIPE 211 (213)
Q Consensus 199 ~Ii~~~~~~~~p~ 211 (213)
+|+++.+++++++
T Consensus 125 ~v~~~~~l~~~~~ 137 (239)
T TIGR00740 125 MVILNFTLQFLPP 137 (239)
T ss_pred EEeeecchhhCCH
Confidence 9999999998863
No 56
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.33 E-value=1.5e-11 Score=101.84 Aligned_cols=111 Identities=18% Similarity=0.250 Sum_probs=82.5
Q ss_pred CCCCCCccccCCCCccCcHHHHHHHHHHHhhh--CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHH
Q psy7826 88 RPYANCITNIGYGAHMQAPFQQAMVLDDLSEE--LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATH 165 (213)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 165 (213)
..|....+.+..+..++.|.....+-..+... ..+..+|||+|||+|.++..++... +..+|+|+|+|+.+++.|++
T Consensus 78 ~~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~ 156 (284)
T TIGR00536 78 KEFYGLEFFVNEHVLIPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEE 156 (284)
T ss_pred ceEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHH
Confidence 34444455566677777766655444333211 1223689999999999999999985 66799999999999999999
Q ss_pred HHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEEEcC
Q psy7826 166 NVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGG 204 (213)
Q Consensus 166 ~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~ 204 (213)
|++.+++ ..+++++++|.....+. .+||+|++|.
T Consensus 157 n~~~~~~----~~~v~~~~~d~~~~~~~-~~fDlIvsNP 190 (284)
T TIGR00536 157 NAEKNQL----EHRVEFIQSNLFEPLAG-QKIDIIVSNP 190 (284)
T ss_pred HHHHcCC----CCcEEEEECchhccCcC-CCccEEEECC
Confidence 9998884 34599999998765433 3799999984
No 57
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.32 E-value=1.8e-11 Score=97.56 Aligned_cols=92 Identities=27% Similarity=0.375 Sum_probs=73.1
Q ss_pred HHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCC
Q psy7826 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 189 (213)
Q Consensus 110 ~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~ 189 (213)
..+++.+.....++.+|||+|||+|..+..+++. + .+++|+|+|+.+++.|++++...+. ..++.+.++|+..
T Consensus 43 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~--~~v~gvD~s~~~i~~a~~~~~~~~~----~~~i~~~~~d~~~ 115 (219)
T TIGR02021 43 RKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR-G--AIVKAVDISEQMVQMARNRAQGRDV----AGNVEFEVNDLLS 115 (219)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEECChhh
Confidence 3455555311456789999999999999999876 2 5999999999999999999877653 3579999999875
Q ss_pred CCCCCCCcCEEEEcCcCccCCC
Q psy7826 190 GYLDEAPYDIIHVGGSIEDIPE 211 (213)
Q Consensus 190 ~~~~~~~fD~Ii~~~~~~~~p~ 211 (213)
.. .+||+|++..++.++|+
T Consensus 116 ~~---~~fD~ii~~~~l~~~~~ 134 (219)
T TIGR02021 116 LC---GEFDIVVCMDVLIHYPA 134 (219)
T ss_pred CC---CCcCEEEEhhHHHhCCH
Confidence 32 57999999988888764
No 58
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.32 E-value=5.9e-12 Score=101.41 Aligned_cols=93 Identities=18% Similarity=0.281 Sum_probs=75.6
Q ss_pred HHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCC
Q psy7826 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 189 (213)
Q Consensus 110 ~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~ 189 (213)
..++..+. ...++.+|||+|||+|+.+.+++..+++.++++++|+++++++.|++++++.|+ .++++++.+|+.+
T Consensus 57 g~~L~~l~-~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl----~~~i~~~~gda~~ 131 (234)
T PLN02781 57 GLFLSMLV-KIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV----DHKINFIQSDALS 131 (234)
T ss_pred HHHHHHHH-HHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEccHHH
Confidence 44454444 355678999999999999999999876678999999999999999999999996 5689999999974
Q ss_pred CCC------CCCCcCEEEEcCcCc
Q psy7826 190 GYL------DEAPYDIIHVGGSIE 207 (213)
Q Consensus 190 ~~~------~~~~fD~Ii~~~~~~ 207 (213)
..+ +.++||+|++++...
T Consensus 132 ~L~~l~~~~~~~~fD~VfiDa~k~ 155 (234)
T PLN02781 132 ALDQLLNNDPKPEFDFAFVDADKP 155 (234)
T ss_pred HHHHHHhCCCCCCCCEEEECCCHH
Confidence 321 135799999997543
No 59
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.32 E-value=2e-11 Score=96.45 Aligned_cols=96 Identities=26% Similarity=0.451 Sum_probs=78.7
Q ss_pred HHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEE-cCCCC
Q psy7826 111 MVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVL-GDGRK 189 (213)
Q Consensus 111 ~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~-~d~~~ 189 (213)
.++..+. ...+.++|||+|++.|+.+.++|..++.+++++++|+++++.+.|++|+++.|+ .++|+++. +|..+
T Consensus 49 ~~L~~L~-~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~----~~~i~~~~~gdal~ 123 (219)
T COG4122 49 ALLRLLA-RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV----DDRIELLLGGDALD 123 (219)
T ss_pred HHHHHHH-HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC----cceEEEEecCcHHH
Confidence 3444443 456778999999999999999999986589999999999999999999999996 55688888 58764
Q ss_pred CCC--CCCCcCEEEEcCcCccCCC
Q psy7826 190 GYL--DEAPYDIIHVGGSIEDIPE 211 (213)
Q Consensus 190 ~~~--~~~~fD~Ii~~~~~~~~p~ 211 (213)
... ..++||+||+++.....|+
T Consensus 124 ~l~~~~~~~fDliFIDadK~~yp~ 147 (219)
T COG4122 124 VLSRLLDGSFDLVFIDADKADYPE 147 (219)
T ss_pred HHHhccCCCccEEEEeCChhhCHH
Confidence 332 2468999999998877764
No 60
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.32 E-value=1.5e-11 Score=100.73 Aligned_cols=90 Identities=29% Similarity=0.355 Sum_probs=72.8
Q ss_pred HHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCC
Q psy7826 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 189 (213)
Q Consensus 110 ~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~ 189 (213)
..++..+ .+.++.+|||+|||+|..+..+++.. .++|+|+|+++.+++.++++... ..++.+.++|+..
T Consensus 42 ~~~l~~l--~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~-------~~~i~~~~~D~~~ 110 (263)
T PTZ00098 42 TKILSDI--ELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD-------KNKIEFEANDILK 110 (263)
T ss_pred HHHHHhC--CCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc-------CCceEEEECCccc
Confidence 4455555 47788999999999999999998764 36999999999999999998654 2479999999875
Q ss_pred CCCCCCCcCEEEEcCcCccCC
Q psy7826 190 GYLDEAPYDIIHVGGSIEDIP 210 (213)
Q Consensus 190 ~~~~~~~fD~Ii~~~~~~~~p 210 (213)
...+.++||+|++..++.|++
T Consensus 111 ~~~~~~~FD~V~s~~~l~h~~ 131 (263)
T PTZ00098 111 KDFPENTFDMIYSRDAILHLS 131 (263)
T ss_pred CCCCCCCeEEEEEhhhHHhCC
Confidence 333446899999988887775
No 61
>PRK06202 hypothetical protein; Provisional
Probab=99.31 E-value=1.8e-11 Score=98.43 Aligned_cols=84 Identities=20% Similarity=0.249 Sum_probs=64.5
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHc---CCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCc
Q psy7826 121 TEGKKVLDIGSGNGYFTALLAWCV---GKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPY 197 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la~~~---~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~f 197 (213)
.++.+|||+|||+|..+..+++.. ++..+++|+|+|+++++.|+++... .++.+.+.+.......+++|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~--------~~~~~~~~~~~~l~~~~~~f 130 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR--------PGVTFRQAVSDELVAEGERF 130 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc--------CCCeEEEEecccccccCCCc
Confidence 456799999999999999988653 3445999999999999999988643 24556555544222234689
Q ss_pred CEEEEcCcCccCCCC
Q psy7826 198 DIIHVGGSIEDIPEG 212 (213)
Q Consensus 198 D~Ii~~~~~~~~p~~ 212 (213)
|+|+++.+++|++++
T Consensus 131 D~V~~~~~lhh~~d~ 145 (232)
T PRK06202 131 DVVTSNHFLHHLDDA 145 (232)
T ss_pred cEEEECCeeecCChH
Confidence 999999999999863
No 62
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.30 E-value=2.3e-11 Score=95.30 Aligned_cols=90 Identities=20% Similarity=0.205 Sum_probs=70.6
Q ss_pred HHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCC
Q psy7826 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 189 (213)
Q Consensus 110 ~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~ 189 (213)
..+++.+ ...++.+|||+|||+|..+..+++. + .+|+|+|+|+.+++.++++....++ ++.+..+|...
T Consensus 20 ~~l~~~~--~~~~~~~vLDiGcG~G~~a~~la~~-g--~~V~~iD~s~~~l~~a~~~~~~~~~------~v~~~~~d~~~ 88 (195)
T TIGR00477 20 SAVREAV--KTVAPCKTLDLGCGQGRNSLYLSLA-G--YDVRAWDHNPASIASVLDMKARENL------PLRTDAYDINA 88 (195)
T ss_pred HHHHHHh--ccCCCCcEEEeCCCCCHHHHHHHHC-C--CeEEEEECCHHHHHHHHHHHHHhCC------CceeEeccchh
Confidence 3445555 3445679999999999999999986 4 6999999999999999999887763 37788888754
Q ss_pred CCCCCCCcCEEEEcCcCccCCC
Q psy7826 190 GYLDEAPYDIIHVGGSIEDIPE 211 (213)
Q Consensus 190 ~~~~~~~fD~Ii~~~~~~~~p~ 211 (213)
...+ .+||+|+++.+++++++
T Consensus 89 ~~~~-~~fD~I~~~~~~~~~~~ 109 (195)
T TIGR00477 89 AALN-EDYDFIFSTVVFMFLQA 109 (195)
T ss_pred cccc-CCCCEEEEecccccCCH
Confidence 2223 47999999998888753
No 63
>PRK05785 hypothetical protein; Provisional
Probab=99.30 E-value=1.8e-11 Score=98.07 Aligned_cols=77 Identities=16% Similarity=0.204 Sum_probs=63.1
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEE
Q psy7826 121 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 200 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~I 200 (213)
.++.+|||+|||||..+..+++.. ..+|+|+|+|++|++.+++. . .++++|+.....++++||+|
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~----------~---~~~~~d~~~lp~~d~sfD~v 114 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA----------D---DKVVGSFEALPFRDKSFDVV 114 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc----------c---ceEEechhhCCCCCCCEEEE
Confidence 457799999999999999999874 36999999999999998764 1 24678877544455789999
Q ss_pred EEcCcCccCCCC
Q psy7826 201 HVGGSIEDIPEG 212 (213)
Q Consensus 201 i~~~~~~~~p~~ 212 (213)
++..++++++++
T Consensus 115 ~~~~~l~~~~d~ 126 (226)
T PRK05785 115 MSSFALHASDNI 126 (226)
T ss_pred EecChhhccCCH
Confidence 999999998763
No 64
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.30 E-value=2.4e-11 Score=107.47 Aligned_cols=91 Identities=26% Similarity=0.387 Sum_probs=73.8
Q ss_pred HHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC
Q psy7826 112 VLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY 191 (213)
Q Consensus 112 ~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~ 191 (213)
+++.+ .+.++.+|||+|||+|..+..+++.. ..+|+|+|+|+.+++.|+++.... ..++++.++|+....
T Consensus 258 l~~~~--~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~------~~~v~~~~~d~~~~~ 327 (475)
T PLN02336 258 FVDKL--DLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGR------KCSVEFEVADCTKKT 327 (475)
T ss_pred HHHhc--CCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcC------CCceEEEEcCcccCC
Confidence 44444 35678899999999999999999875 369999999999999999887543 247999999987544
Q ss_pred CCCCCcCEEEEcCcCccCCCC
Q psy7826 192 LDEAPYDIIHVGGSIEDIPEG 212 (213)
Q Consensus 192 ~~~~~fD~Ii~~~~~~~~p~~ 212 (213)
.+.++||+|++..++.|++++
T Consensus 328 ~~~~~fD~I~s~~~l~h~~d~ 348 (475)
T PLN02336 328 YPDNSFDVIYSRDTILHIQDK 348 (475)
T ss_pred CCCCCEEEEEECCcccccCCH
Confidence 344689999999999999864
No 65
>PRK08317 hypothetical protein; Provisional
Probab=99.30 E-value=4.6e-11 Score=95.63 Aligned_cols=94 Identities=24% Similarity=0.429 Sum_probs=75.6
Q ss_pred HHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCC
Q psy7826 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 189 (213)
Q Consensus 110 ~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~ 189 (213)
+.++..+ .+.++.+|||+|||+|..+..+++.+++.++++++|+++.+++.++++.... ..++.+..+|+..
T Consensus 9 ~~~~~~~--~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~------~~~~~~~~~d~~~ 80 (241)
T PRK08317 9 ARTFELL--AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL------GPNVEFVRGDADG 80 (241)
T ss_pred HHHHHHc--CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC------CCceEEEeccccc
Confidence 3345555 4678889999999999999999998756679999999999999999884332 3579999999874
Q ss_pred CCCCCCCcCEEEEcCcCccCCC
Q psy7826 190 GYLDEAPYDIIHVGGSIEDIPE 211 (213)
Q Consensus 190 ~~~~~~~fD~Ii~~~~~~~~p~ 211 (213)
.....++||+|++..+++++++
T Consensus 81 ~~~~~~~~D~v~~~~~~~~~~~ 102 (241)
T PRK08317 81 LPFPDGSFDAVRSDRVLQHLED 102 (241)
T ss_pred CCCCCCCceEEEEechhhccCC
Confidence 3333468999999999988875
No 66
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.29 E-value=4.5e-11 Score=106.19 Aligned_cols=113 Identities=13% Similarity=0.128 Sum_probs=89.2
Q ss_pred CCCCCCCccccCCCCccCcHHHHHHHHHHHhhh-------------------------CCCCCEEEEEcCCccHHHHHHH
Q psy7826 87 WRPYANCITNIGYGAHMQAPFQQAMVLDDLSEE-------------------------LTEGKKVLDIGSGNGYFTALLA 141 (213)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------------------------~~~~~~vLDiG~G~G~~t~~la 141 (213)
...|....+.++.+..|++|+++..+-..+... ..++.+|||+|||+|..+..++
T Consensus 78 ~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la 157 (506)
T PRK01544 78 VKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLL 157 (506)
T ss_pred cCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHH
Confidence 566777778889999999999876554333210 1134689999999999999999
Q ss_pred HHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEEEcCc
Q psy7826 142 WCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGS 205 (213)
Q Consensus 142 ~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~ 205 (213)
..+ +..+|+++|+|+.+++.|++|+..+++ ..+++++++|+..... ..+||+|++|..
T Consensus 158 ~~~-p~~~v~avDis~~al~~A~~N~~~~~l----~~~v~~~~~D~~~~~~-~~~fDlIvsNPP 215 (506)
T PRK01544 158 CEL-PNANVIATDISLDAIEVAKSNAIKYEV----TDRIQIIHSNWFENIE-KQKFDFIVSNPP 215 (506)
T ss_pred HHC-CCCeEEEEECCHHHHHHHHHHHHHcCC----ccceeeeecchhhhCc-CCCccEEEECCC
Confidence 886 667999999999999999999998875 4579999999865443 347999999853
No 67
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.29 E-value=2e-11 Score=83.63 Aligned_cols=74 Identities=24% Similarity=0.446 Sum_probs=60.9
Q ss_pred EEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEEEcCcC
Q psy7826 127 LDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSI 206 (213)
Q Consensus 127 LDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~ 206 (213)
||+|||+|..+..+++. +..+++++|+++.+++.++++.... ++.+.++|......++++||+|++..++
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~--------~~~~~~~d~~~l~~~~~sfD~v~~~~~~ 70 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNE--------GVSFRQGDAEDLPFPDNSFDVVFSNSVL 70 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTS--------TEEEEESBTTSSSS-TT-EEEEEEESHG
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhccccc--------CchheeehHHhCccccccccccccccce
Confidence 89999999999999998 3479999999999999999997653 4569999998665566799999999999
Q ss_pred ccCC
Q psy7826 207 EDIP 210 (213)
Q Consensus 207 ~~~p 210 (213)
++++
T Consensus 71 ~~~~ 74 (95)
T PF08241_consen 71 HHLE 74 (95)
T ss_dssp GGSS
T ss_pred eecc
Confidence 9984
No 68
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.29 E-value=5.2e-11 Score=93.33 Aligned_cols=95 Identities=18% Similarity=0.258 Sum_probs=74.9
Q ss_pred ccCcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeE
Q psy7826 102 HMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIK 181 (213)
Q Consensus 102 ~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~ 181 (213)
.++++.....++..+ .+.++.+|||+|||+|.++..+++.. +.++|+++|+++.+++.+++++++++ ..+++
T Consensus 22 p~t~~~v~~~l~~~l--~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~-----~~~v~ 93 (196)
T PRK07402 22 PLTKREVRLLLISQL--RLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFG-----VKNVE 93 (196)
T ss_pred CCCHHHHHHHHHHhc--CCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhC-----CCCeE
Confidence 356666666677777 46788899999999999999999874 66899999999999999999999887 46899
Q ss_pred EEEcCCCCCCCC-CCCcCEEEEcC
Q psy7826 182 FVLGDGRKGYLD-EAPYDIIHVGG 204 (213)
Q Consensus 182 ~~~~d~~~~~~~-~~~fD~Ii~~~ 204 (213)
++.+|+...... ...+|.++++.
T Consensus 94 ~~~~d~~~~~~~~~~~~d~v~~~~ 117 (196)
T PRK07402 94 VIEGSAPECLAQLAPAPDRVCIEG 117 (196)
T ss_pred EEECchHHHHhhCCCCCCEEEEEC
Confidence 999998642211 12468877754
No 69
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.29 E-value=2.1e-11 Score=99.09 Aligned_cols=88 Identities=19% Similarity=0.271 Sum_probs=68.0
Q ss_pred HHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCC
Q psy7826 109 QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR 188 (213)
Q Consensus 109 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~ 188 (213)
...+++.+. ..++.+|||+|||+|..+..+++. + .+++++|+|+.+++.++++. ....++++|+.
T Consensus 31 a~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~~~D~s~~~l~~a~~~~----------~~~~~~~~d~~ 95 (251)
T PRK10258 31 ADALLAMLP--QRKFTHVLDAGCGPGWMSRYWRER-G--SQVTALDLSPPMLAQARQKD----------AADHYLAGDIE 95 (251)
T ss_pred HHHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHc-C--CeEEEEECCHHHHHHHHhhC----------CCCCEEEcCcc
Confidence 344555552 335679999999999999988875 3 69999999999999998873 23467889987
Q ss_pred CCCCCCCCcCEEEEcCcCccCCC
Q psy7826 189 KGYLDEAPYDIIHVGGSIEDIPE 211 (213)
Q Consensus 189 ~~~~~~~~fD~Ii~~~~~~~~p~ 211 (213)
......++||+|+++.+++++++
T Consensus 96 ~~~~~~~~fD~V~s~~~l~~~~d 118 (251)
T PRK10258 96 SLPLATATFDLAWSNLAVQWCGN 118 (251)
T ss_pred cCcCCCCcEEEEEECchhhhcCC
Confidence 54334468999999999888765
No 70
>KOG2904|consensus
Probab=99.29 E-value=5.1e-11 Score=95.64 Aligned_cols=116 Identities=19% Similarity=0.236 Sum_probs=90.0
Q ss_pred CCCCCCCCCccccCCCCccCcHHHHHHHHHHHhh----hCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHH
Q psy7826 85 TTWRPYANCITNIGYGAHMQAPFQQAMVLDDLSE----ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLV 160 (213)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l 160 (213)
+..+.|.+-.+....|..|+.|+.+.++...+.. ....+..+||+|||+|..+..++..+ +.+.++|+|.|+.++
T Consensus 107 lg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L-~~~~v~AiD~S~~Ai 185 (328)
T KOG2904|consen 107 LGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGL-PQCTVTAIDVSKAAI 185 (328)
T ss_pred eccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcC-CCceEEEEeccHHHH
Confidence 3377888888888999999999987654333321 12245579999999999999999998 578999999999999
Q ss_pred HHHHHHHhhCCCCCccCCCeEEEEc----CCCCCC-CCCCCcCEEEEcCc
Q psy7826 161 QRATHNVISGNPEFVKDGRIKFVLG----DGRKGY-LDEAPYDIIHVGGS 205 (213)
Q Consensus 161 ~~a~~~~~~~gl~~~~~~~v~~~~~----d~~~~~-~~~~~fD~Ii~~~~ 205 (213)
..|.+|++++++ ...+.++.- |...+. ...+++|++++|..
T Consensus 186 ~La~eN~qr~~l----~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPP 231 (328)
T KOG2904|consen 186 KLAKENAQRLKL----SGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPP 231 (328)
T ss_pred HHHHHHHHHHhh----cCceEEEecccccccccccccccCceeEEecCCC
Confidence 999999999987 667877744 444333 22468999999964
No 71
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.28 E-value=3e-11 Score=93.23 Aligned_cols=79 Identities=15% Similarity=0.313 Sum_probs=61.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEE
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIH 201 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii 201 (213)
.-.++||+|||.|.+|..||.++ .+++++|+++.+++.|++++.. .++|+++++|+...+++ ++||+|+
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~-------~~~V~~~~~dvp~~~P~-~~FDLIV 111 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG-------LPHVEWIQADVPEFWPE-GRFDLIV 111 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT--------SSEEEEES-TTT---S-S-EEEEE
T ss_pred ccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC-------CCCeEEEECcCCCCCCC-CCeeEEE
Confidence 34689999999999999999997 5999999999999999999876 46899999999876655 6899999
Q ss_pred EcCcCccCCC
Q psy7826 202 VGGSIEDIPE 211 (213)
Q Consensus 202 ~~~~~~~~p~ 211 (213)
+...+.++.+
T Consensus 112 ~SEVlYYL~~ 121 (201)
T PF05401_consen 112 LSEVLYYLDD 121 (201)
T ss_dssp EES-GGGSSS
T ss_pred EehHhHcCCC
Confidence 9999888754
No 72
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.28 E-value=7.2e-11 Score=95.63 Aligned_cols=79 Identities=20% Similarity=0.246 Sum_probs=67.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEE
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIH 201 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii 201 (213)
.+.+|||+|||+|..+..+++.. +..+++|+|+++.+++.+++++...+ ..++.++++|+....+ .++||+|+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~~~~-~~~fD~Vi 159 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLG-----LDNVTFLQSDWFEPLP-GGKFDLIV 159 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcC-----CCeEEEEECchhccCc-CCceeEEE
Confidence 44689999999999999999985 56799999999999999999999887 4579999999976443 45899999
Q ss_pred EcCcCc
Q psy7826 202 VGGSIE 207 (213)
Q Consensus 202 ~~~~~~ 207 (213)
++....
T Consensus 160 ~npPy~ 165 (251)
T TIGR03534 160 SNPPYI 165 (251)
T ss_pred ECCCCC
Confidence 986543
No 73
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.28 E-value=2.6e-11 Score=95.59 Aligned_cols=80 Identities=21% Similarity=0.218 Sum_probs=66.9
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCC-CCCC--CCCCCc
Q psy7826 121 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDG-RKGY--LDEAPY 197 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~-~~~~--~~~~~f 197 (213)
.++.+|||+|||+|..+..+++.. +..+++|+|+|+.+++.+++++...+ .+++.++++|+ .... .+.++|
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~-----~~~v~~~~~d~~~~l~~~~~~~~~ 112 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEG-----LTNLRLLCGDAVEVLLDMFPDGSL 112 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcC-----CCCEEEEecCHHHHHHHHcCcccc
Confidence 367899999999999999999985 66799999999999999999998877 57899999998 4211 234579
Q ss_pred CEEEEcCcC
Q psy7826 198 DIIHVGGSI 206 (213)
Q Consensus 198 D~Ii~~~~~ 206 (213)
|+|+++...
T Consensus 113 D~V~~~~~~ 121 (202)
T PRK00121 113 DRIYLNFPD 121 (202)
T ss_pred ceEEEECCC
Confidence 999998654
No 74
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.27 E-value=3e-11 Score=99.95 Aligned_cols=88 Identities=25% Similarity=0.376 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcC
Q psy7826 107 FQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGD 186 (213)
Q Consensus 107 ~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d 186 (213)
.....+++++.....++++|||+|||||.++...+++ |. .+|+|+|+++.+++.|++|+..+++ ..++.+. .
T Consensus 146 ~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl-GA-~~v~a~DiDp~Av~~a~~N~~~N~~----~~~~~v~--~ 217 (295)
T PF06325_consen 146 PTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL-GA-KKVVAIDIDPLAVEAARENAELNGV----EDRIEVS--L 217 (295)
T ss_dssp HHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT-TB-SEEEEEESSCHHHHHHHHHHHHTT-----TTCEEES--C
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc-CC-CeEEEecCCHHHHHHHHHHHHHcCC----CeeEEEE--E
Confidence 3446677777666788999999999999999988876 65 4899999999999999999999996 4455442 2
Q ss_pred CCCCCCCCCCcCEEEEcC
Q psy7826 187 GRKGYLDEAPYDIIHVGG 204 (213)
Q Consensus 187 ~~~~~~~~~~fD~Ii~~~ 204 (213)
..+ ... .+||+|++|-
T Consensus 218 ~~~-~~~-~~~dlvvANI 233 (295)
T PF06325_consen 218 SED-LVE-GKFDLVVANI 233 (295)
T ss_dssp TSC-TCC-S-EEEEEEES
T ss_pred ecc-ccc-ccCCEEEECC
Confidence 222 222 6899999884
No 75
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.27 E-value=4.7e-11 Score=92.71 Aligned_cols=91 Identities=21% Similarity=0.206 Sum_probs=69.8
Q ss_pred HHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCC
Q psy7826 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 189 (213)
Q Consensus 110 ~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~ 189 (213)
..+++.+ ...++.++||+|||.|.-+.+||++ | ..|+++|+|+..++.+++.+++.++ +|+..+.|+..
T Consensus 20 s~v~~a~--~~~~~g~~LDlgcG~GRNalyLA~~-G--~~VtAvD~s~~al~~l~~~a~~~~l------~i~~~~~Dl~~ 88 (192)
T PF03848_consen 20 SEVLEAV--PLLKPGKALDLGCGEGRNALYLASQ-G--FDVTAVDISPVALEKLQRLAEEEGL------DIRTRVADLND 88 (192)
T ss_dssp HHHHHHC--TTS-SSEEEEES-TTSHHHHHHHHT-T---EEEEEESSHHHHHHHHHHHHHTT-------TEEEEE-BGCC
T ss_pred HHHHHHH--hhcCCCcEEEcCCCCcHHHHHHHHC-C--CeEEEEECCHHHHHHHHHHHhhcCc------eeEEEEecchh
Confidence 3455555 3445679999999999999999998 5 6899999999999999999888774 59999999875
Q ss_pred CCCCCCCcCEEEEcCcCccCCCC
Q psy7826 190 GYLDEAPYDIIHVGGSIEDIPEG 212 (213)
Q Consensus 190 ~~~~~~~fD~Ii~~~~~~~~p~~ 212 (213)
...+ ..||+|++..++.+++.+
T Consensus 89 ~~~~-~~yD~I~st~v~~fL~~~ 110 (192)
T PF03848_consen 89 FDFP-EEYDFIVSTVVFMFLQRE 110 (192)
T ss_dssp BS-T-TTEEEEEEESSGGGS-GG
T ss_pred cccc-CCcCEEEEEEEeccCCHH
Confidence 4443 579999999888888754
No 76
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.26 E-value=1.3e-10 Score=93.23 Aligned_cols=95 Identities=25% Similarity=0.479 Sum_probs=75.7
Q ss_pred HHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCC
Q psy7826 111 MVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKG 190 (213)
Q Consensus 111 ~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~ 190 (213)
.++..+ ...++.+|||+|||+|..+..++...+...+++++|+++.+++.+++++...++ ..++.++.+|+...
T Consensus 42 ~~~~~~--~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~~ 115 (239)
T PRK00216 42 KTIKWL--GVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL----SGNVEFVQGDAEAL 115 (239)
T ss_pred HHHHHh--CCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc----ccCeEEEecccccC
Confidence 344444 345678999999999999999999863367999999999999999999876543 35789999998754
Q ss_pred CCCCCCcCEEEEcCcCccCCC
Q psy7826 191 YLDEAPYDIIHVGGSIEDIPE 211 (213)
Q Consensus 191 ~~~~~~fD~Ii~~~~~~~~p~ 211 (213)
....++||+|+++.+++++++
T Consensus 116 ~~~~~~~D~I~~~~~l~~~~~ 136 (239)
T PRK00216 116 PFPDNSFDAVTIAFGLRNVPD 136 (239)
T ss_pred CCCCCCccEEEEecccccCCC
Confidence 444468999999988887765
No 77
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.26 E-value=1.1e-11 Score=97.59 Aligned_cols=96 Identities=29% Similarity=0.412 Sum_probs=76.1
Q ss_pred HHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCC
Q psy7826 109 QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR 188 (213)
Q Consensus 109 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~ 188 (213)
...++..+. ......+|||+||++|+.+.++|+.++++++|+++|++++..+.|++++++.|+ .++|+++.+|+.
T Consensus 33 ~g~lL~~l~-~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~----~~~I~~~~gda~ 107 (205)
T PF01596_consen 33 TGQLLQMLV-RLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL----DDRIEVIEGDAL 107 (205)
T ss_dssp HHHHHHHHH-HHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG----GGGEEEEES-HH
T ss_pred HHHHHHHHH-HhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC----CCcEEEEEeccH
Confidence 344555554 244567999999999999999999987779999999999999999999999986 568999999986
Q ss_pred CCCC----C--CCCcCEEEEcCcCccC
Q psy7826 189 KGYL----D--EAPYDIIHVGGSIEDI 209 (213)
Q Consensus 189 ~~~~----~--~~~fD~Ii~~~~~~~~ 209 (213)
+..+ . .++||.||+++...+.
T Consensus 108 ~~l~~l~~~~~~~~fD~VFiDa~K~~y 134 (205)
T PF01596_consen 108 EVLPELANDGEEGQFDFVFIDADKRNY 134 (205)
T ss_dssp HHHHHHHHTTTTTSEEEEEEESTGGGH
T ss_pred hhHHHHHhccCCCceeEEEEcccccch
Confidence 3221 1 2479999999976554
No 78
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.25 E-value=7.8e-11 Score=94.26 Aligned_cols=92 Identities=27% Similarity=0.367 Sum_probs=71.8
Q ss_pred HHHHHHHhh-hCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCC
Q psy7826 110 AMVLDDLSE-ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR 188 (213)
Q Consensus 110 ~~~~~~l~~-~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~ 188 (213)
..++..+.. ...++.+|||+|||+|..+..+++. + .+++|+|+|+.+++.|+++....+. ..++.+..+|..
T Consensus 50 ~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~-~--~~v~~~D~s~~~i~~a~~~~~~~~~----~~~i~~~~~d~~ 122 (230)
T PRK07580 50 DTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARR-G--AKVVASDISPQMVEEARERAPEAGL----AGNITFEVGDLE 122 (230)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHc-C--CEEEEEECCHHHHHHHHHHHHhcCC----ccCcEEEEcCch
Confidence 334444431 1346779999999999999999886 3 5799999999999999999887663 357899999953
Q ss_pred CCCCCCCCcCEEEEcCcCccCCC
Q psy7826 189 KGYLDEAPYDIIHVGGSIEDIPE 211 (213)
Q Consensus 189 ~~~~~~~~fD~Ii~~~~~~~~p~ 211 (213)
. ..++||+|++..+++|+|+
T Consensus 123 ~---~~~~fD~v~~~~~l~~~~~ 142 (230)
T PRK07580 123 S---LLGRFDTVVCLDVLIHYPQ 142 (230)
T ss_pred h---ccCCcCEEEEcchhhcCCH
Confidence 2 2357999999999988764
No 79
>PLN02476 O-methyltransferase
Probab=99.25 E-value=2.4e-11 Score=99.51 Aligned_cols=95 Identities=15% Similarity=0.229 Sum_probs=77.1
Q ss_pred HHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCC
Q psy7826 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 189 (213)
Q Consensus 110 ~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~ 189 (213)
..++..+. ...+.++|||+|+++|+.|.++++.++++++|+++|.+++..+.|++++++.|+ .++|+++.+|+.+
T Consensus 107 g~lL~~L~-~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl----~~~I~li~GdA~e 181 (278)
T PLN02476 107 AQLLAMLV-QILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV----SHKVNVKHGLAAE 181 (278)
T ss_pred HHHHHHHH-HhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEcCHHH
Confidence 33444443 355678999999999999999999887788999999999999999999999996 5689999999874
Q ss_pred CCC------CCCCcCEEEEcCcCccC
Q psy7826 190 GYL------DEAPYDIIHVGGSIEDI 209 (213)
Q Consensus 190 ~~~------~~~~fD~Ii~~~~~~~~ 209 (213)
..+ ..++||.||+++.-...
T Consensus 182 ~L~~l~~~~~~~~FD~VFIDa~K~~Y 207 (278)
T PLN02476 182 SLKSMIQNGEGSSYDFAFVDADKRMY 207 (278)
T ss_pred HHHHHHhcccCCCCCEEEECCCHHHH
Confidence 322 12579999999875443
No 80
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=6.5e-11 Score=96.96 Aligned_cols=88 Identities=20% Similarity=0.251 Sum_probs=72.6
Q ss_pred HHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCC
Q psy7826 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 189 (213)
Q Consensus 110 ~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~ 189 (213)
..+++-+ ....+.+|||+|||.|.+++.+++.. |..+++-+|+|..+++.+++|+..++ ..+..+...|..+
T Consensus 148 ~lLl~~l--~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~-----~~~~~v~~s~~~~ 219 (300)
T COG2813 148 RLLLETL--PPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANG-----VENTEVWASNLYE 219 (300)
T ss_pred HHHHHhC--CccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcC-----CCccEEEEecccc
Confidence 4455555 24445599999999999999999994 78899999999999999999999988 4555788888876
Q ss_pred CCCCCCCcCEEEEcCcCc
Q psy7826 190 GYLDEAPYDIIHVGGSIE 207 (213)
Q Consensus 190 ~~~~~~~fD~Ii~~~~~~ 207 (213)
.... +||.|++|..+|
T Consensus 220 ~v~~--kfd~IisNPPfh 235 (300)
T COG2813 220 PVEG--KFDLIISNPPFH 235 (300)
T ss_pred cccc--cccEEEeCCCcc
Confidence 5543 899999998776
No 81
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.25 E-value=6.8e-11 Score=101.02 Aligned_cols=93 Identities=19% Similarity=0.295 Sum_probs=72.0
Q ss_pred HHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCC
Q psy7826 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 189 (213)
Q Consensus 110 ~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~ 189 (213)
..+++.+. ...+.+|||+|||+|.++..+++. .|..+|+++|+|+.+++.+++|++.++.+. ..++++..+|...
T Consensus 218 rllL~~lp--~~~~~~VLDLGCGtGvi~i~la~~-~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~--~~~v~~~~~D~l~ 292 (378)
T PRK15001 218 RFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDK-NPQAKVVFVDESPMAVASSRLNVETNMPEA--LDRCEFMINNALS 292 (378)
T ss_pred HHHHHhCC--cccCCeEEEEeccccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCccc--CceEEEEEccccc
Confidence 44555552 233469999999999999999998 477899999999999999999998776310 1378999999875
Q ss_pred CCCCCCCcCEEEEcCcCcc
Q psy7826 190 GYLDEAPYDIIHVGGSIED 208 (213)
Q Consensus 190 ~~~~~~~fD~Ii~~~~~~~ 208 (213)
.... .+||+|++|..++.
T Consensus 293 ~~~~-~~fDlIlsNPPfh~ 310 (378)
T PRK15001 293 GVEP-FRFNAVLCNPPFHQ 310 (378)
T ss_pred cCCC-CCEEEEEECcCccc
Confidence 4433 47999999977653
No 82
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.25 E-value=8.4e-11 Score=98.40 Aligned_cols=97 Identities=23% Similarity=0.212 Sum_probs=72.1
Q ss_pred HHHHHHHHhhh-CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCC
Q psy7826 109 QAMVLDDLSEE-LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDG 187 (213)
Q Consensus 109 ~~~~~~~l~~~-~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~ 187 (213)
...++..+... ..++.+|||+|||+|..+..+++. + .+|+|+|+|+.+++.++++....+.......++.+..+|+
T Consensus 130 v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~-g--~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl 206 (315)
T PLN02585 130 VEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE-G--AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL 206 (315)
T ss_pred HHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence 34455555321 125779999999999999999986 3 5899999999999999999876421000024678989987
Q ss_pred CCCCCCCCCcCEEEEcCcCccCCC
Q psy7826 188 RKGYLDEAPYDIIHVGGSIEDIPE 211 (213)
Q Consensus 188 ~~~~~~~~~fD~Ii~~~~~~~~p~ 211 (213)
... .++||+|++..+++|+|+
T Consensus 207 ~~l---~~~fD~Vv~~~vL~H~p~ 227 (315)
T PLN02585 207 ESL---SGKYDTVTCLDVLIHYPQ 227 (315)
T ss_pred hhc---CCCcCEEEEcCEEEecCH
Confidence 542 358999999999999876
No 83
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.25 E-value=4.6e-11 Score=95.84 Aligned_cols=93 Identities=25% Similarity=0.356 Sum_probs=74.3
Q ss_pred HHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCC
Q psy7826 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 189 (213)
Q Consensus 110 ~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~ 189 (213)
+.++.... .+....+|||+|||+|..+..+|++. ++.++++||+++.+.+.|+++.+.+++ .++|+++++|+.+
T Consensus 33 aiLL~~~~-~~~~~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~ln~l----~~ri~v~~~Di~~ 106 (248)
T COG4123 33 AILLAAFA-PVPKKGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVALNPL----EERIQVIEADIKE 106 (248)
T ss_pred HHHHHhhc-ccccCCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHhCcc----hhceeEehhhHHH
Confidence 33444443 34457899999999999999999996 558999999999999999999999887 6899999999984
Q ss_pred CCC--CCCCcCEEEEcCcCcc
Q psy7826 190 GYL--DEAPYDIIHVGGSIED 208 (213)
Q Consensus 190 ~~~--~~~~fD~Ii~~~~~~~ 208 (213)
... ...+||+|++|.....
T Consensus 107 ~~~~~~~~~fD~Ii~NPPyf~ 127 (248)
T COG4123 107 FLKALVFASFDLIICNPPYFK 127 (248)
T ss_pred hhhcccccccCEEEeCCCCCC
Confidence 322 2346999999976543
No 84
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.24 E-value=2.7e-11 Score=86.76 Aligned_cols=80 Identities=29% Similarity=0.483 Sum_probs=65.7
Q ss_pred CCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC--CCCCCcCEE
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY--LDEAPYDII 200 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~--~~~~~fD~I 200 (213)
|.+|||+|||+|..+..+++. + ..+++|+|+++..++.+++++...++ ..+++++++|..... ....+||+|
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~-~-~~~~~gvdi~~~~~~~a~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~D~I 74 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRR-G-AARVTGVDIDPEAVELARRNLPRNGL----DDRVEVIVGDARDLPEPLPDGKFDLI 74 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHH-C-TCEEEEEESSHHHHHHHHHHCHHCTT----TTTEEEEESHHHHHHHTCTTT-EEEE
T ss_pred CCEEEEcCcchHHHHHHHHHH-C-CCeEEEEEECHHHHHHHHHHHHHccC----CceEEEEECchhhchhhccCceeEEE
Confidence 468999999999999999998 4 57999999999999999999999875 468999999987432 334689999
Q ss_pred EEcCcCcc
Q psy7826 201 HVGGSIED 208 (213)
Q Consensus 201 i~~~~~~~ 208 (213)
++|.....
T Consensus 75 v~npP~~~ 82 (117)
T PF13659_consen 75 VTNPPYGP 82 (117)
T ss_dssp EE--STTS
T ss_pred EECCCCcc
Confidence 99987654
No 85
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.24 E-value=7.3e-11 Score=90.40 Aligned_cols=85 Identities=24% Similarity=0.273 Sum_probs=68.7
Q ss_pred HHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCC
Q psy7826 111 MVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKG 190 (213)
Q Consensus 111 ~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~ 190 (213)
.+++.+ .+.++.+|||+|||+|.++..+++. + .+++++|+++.+++.+++++.. ..+++++.+|+...
T Consensus 4 ~i~~~~--~~~~~~~vLEiG~G~G~lt~~l~~~-~--~~v~~vE~~~~~~~~~~~~~~~-------~~~v~ii~~D~~~~ 71 (169)
T smart00650 4 KIVRAA--NLRPGDTVLEIGPGKGALTEELLER-A--ARVTAIEIDPRLAPRLREKFAA-------ADNLTVIHGDALKF 71 (169)
T ss_pred HHHHhc--CCCCcCEEEEECCCccHHHHHHHhc-C--CeEEEEECCHHHHHHHHHHhcc-------CCCEEEEECchhcC
Confidence 455555 4667889999999999999999987 3 6999999999999999999754 34899999999864
Q ss_pred CCCCCCcCEEEEcCcCc
Q psy7826 191 YLDEAPYDIIHVGGSIE 207 (213)
Q Consensus 191 ~~~~~~fD~Ii~~~~~~ 207 (213)
......||.|++|...+
T Consensus 72 ~~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 72 DLPKLQPYKVVGNLPYN 88 (169)
T ss_pred CccccCCCEEEECCCcc
Confidence 44444699999986543
No 86
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.24 E-value=5.2e-11 Score=98.76 Aligned_cols=80 Identities=23% Similarity=0.206 Sum_probs=67.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEE
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIH 201 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii 201 (213)
++.+|||+|||+|..+..+++. + .+|+|+|+|+.+++.++++++..+ . ++++.+.|+..... .++||+|+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~-g--~~V~avD~s~~ai~~~~~~~~~~~-----l-~v~~~~~D~~~~~~-~~~fD~I~ 189 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL-G--FDVTAVDINQQSLENLQEIAEKEN-----L-NIRTGLYDINSASI-QEEYDFIL 189 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHHcC-----C-ceEEEEechhcccc-cCCccEEE
Confidence 3459999999999999999986 4 699999999999999999998877 3 78899999865333 45899999
Q ss_pred EcCcCccCCC
Q psy7826 202 VGGSIEDIPE 211 (213)
Q Consensus 202 ~~~~~~~~p~ 211 (213)
+..+++++++
T Consensus 190 ~~~vl~~l~~ 199 (287)
T PRK12335 190 STVVLMFLNR 199 (287)
T ss_pred EcchhhhCCH
Confidence 9999887753
No 87
>KOG1540|consensus
Probab=99.24 E-value=8.3e-11 Score=93.58 Aligned_cols=97 Identities=20% Similarity=0.312 Sum_probs=79.7
Q ss_pred HHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCC-----CEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcC
Q psy7826 112 VLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKT-----GKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGD 186 (213)
Q Consensus 112 ~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~-----~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d 186 (213)
.+..+ .+.+++++||+|||||..+..+.+.++.. .+|+.+|+|++|+..++++..+.++. +..++.|+++|
T Consensus 92 ~v~~L--~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~--~~~~~~w~~~d 167 (296)
T KOG1540|consen 92 FVSKL--GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK--ASSRVEWVEGD 167 (296)
T ss_pred hhhcc--CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC--cCCceEEEeCC
Confidence 34444 46778999999999999999999987432 79999999999999999998777651 12348999999
Q ss_pred CCCCCCCCCCcCEEEEcCcCccCCCC
Q psy7826 187 GRKGYLDEAPYDIIHVGGSIEDIPEG 212 (213)
Q Consensus 187 ~~~~~~~~~~fD~Ii~~~~~~~~p~~ 212 (213)
+++.+.++.+||...+.+++.+.+++
T Consensus 168 AE~LpFdd~s~D~yTiafGIRN~th~ 193 (296)
T KOG1540|consen 168 AEDLPFDDDSFDAYTIAFGIRNVTHI 193 (296)
T ss_pred cccCCCCCCcceeEEEecceecCCCH
Confidence 99655666799999999999988864
No 88
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.24 E-value=1.1e-10 Score=90.07 Aligned_cols=81 Identities=23% Similarity=0.300 Sum_probs=67.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCE
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDI 199 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~ 199 (213)
..++.+|||+|||+|..+..+++. ++ +++++|+++.+++.++++++.++ . +++++.+|..... . ++||+
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~-~~--~v~~vD~s~~~~~~a~~~~~~~~-----~-~~~~~~~d~~~~~-~-~~fD~ 85 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGK-GK--CILTTDINPFAVKELRENAKLNN-----V-GLDVVMTDLFKGV-R-GKFDV 85 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhc-CC--EEEEEECCHHHHHHHHHHHHHcC-----C-ceEEEEccccccc-C-CcccE
Confidence 445678999999999999999987 33 89999999999999999998776 2 6899999987533 2 48999
Q ss_pred EEEcCcCccCCC
Q psy7826 200 IHVGGSIEDIPE 211 (213)
Q Consensus 200 Ii~~~~~~~~p~ 211 (213)
|+++....+.++
T Consensus 86 Vi~n~p~~~~~~ 97 (179)
T TIGR00537 86 ILFNPPYLPLED 97 (179)
T ss_pred EEECCCCCCCcc
Confidence 999987766553
No 89
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.24 E-value=7.2e-11 Score=94.59 Aligned_cols=92 Identities=24% Similarity=0.360 Sum_probs=71.4
Q ss_pred HHHHHHHhhhC-CCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCC
Q psy7826 110 AMVLDDLSEEL-TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR 188 (213)
Q Consensus 110 ~~~~~~l~~~~-~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~ 188 (213)
..+++.+.... .++.+|||+|||+|..+..+++.. +..+++++|+++.+++.++++.. +++.++.+|..
T Consensus 21 ~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~---------~~~~~~~~d~~ 90 (240)
T TIGR02072 21 KRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS---------ENVQFICGDAE 90 (240)
T ss_pred HHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC---------CCCeEEecchh
Confidence 34444443211 344689999999999999999984 67789999999999999887752 36789999988
Q ss_pred CCCCCCCCcCEEEEcCcCccCCC
Q psy7826 189 KGYLDEAPYDIIHVGGSIEDIPE 211 (213)
Q Consensus 189 ~~~~~~~~fD~Ii~~~~~~~~p~ 211 (213)
......++||+|+++.+++++++
T Consensus 91 ~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 91 KLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred hCCCCCCceeEEEEhhhhhhccC
Confidence 54434468999999999988765
No 90
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=2.1e-10 Score=87.64 Aligned_cols=95 Identities=23% Similarity=0.275 Sum_probs=72.8
Q ss_pred CccCcHHHHHHHHHHHh-hhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCC
Q psy7826 101 AHMQAPFQQAMVLDDLS-EELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR 179 (213)
Q Consensus 101 ~~~~~~~~~~~~~~~l~-~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~ 179 (213)
|..+.+...+.++.... ...-.|.+|+|+|||||.++...+-+ |+ .+|+++|+++++++.+++|+.++ ..+
T Consensus 23 QY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~l-Ga-~~V~~vdiD~~a~ei~r~N~~~l------~g~ 94 (198)
T COG2263 23 QYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALL-GA-SRVLAVDIDPEALEIARANAEEL------LGD 94 (198)
T ss_pred ecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhc-CC-cEEEEEecCHHHHHHHHHHHHhh------CCc
Confidence 34444455555555442 12346778999999999999887766 66 49999999999999999999884 468
Q ss_pred eEEEEcCCCCCCCCCCCcCEEEEcCcC
Q psy7826 180 IKFVLGDGRKGYLDEAPYDIIHVGGSI 206 (213)
Q Consensus 180 v~~~~~d~~~~~~~~~~fD~Ii~~~~~ 206 (213)
+.|.++|+.... .+||.|++|..+
T Consensus 95 v~f~~~dv~~~~---~~~dtvimNPPF 118 (198)
T COG2263 95 VEFVVADVSDFR---GKFDTVIMNPPF 118 (198)
T ss_pred eEEEEcchhhcC---CccceEEECCCC
Confidence 999999998632 468999998654
No 91
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.24 E-value=5.3e-11 Score=94.98 Aligned_cols=82 Identities=24% Similarity=0.279 Sum_probs=70.0
Q ss_pred CEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEEEc
Q psy7826 124 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVG 203 (213)
Q Consensus 124 ~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 203 (213)
++|||+|||+|..+..+++.. +..+++|+|+|+.+++.+++++...|+ ..++++..+|......+ ++||+|++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl----~~~i~~~~~d~~~~~~~-~~fD~I~~~ 74 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGL----QGRIRIFYRDSAKDPFP-DTYDLVFGF 74 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCC----CcceEEEecccccCCCC-CCCCEeehH
Confidence 379999999999999999985 557999999999999999999988775 56899999998643323 479999999
Q ss_pred CcCccCCC
Q psy7826 204 GSIEDIPE 211 (213)
Q Consensus 204 ~~~~~~p~ 211 (213)
.+++|+++
T Consensus 75 ~~l~~~~~ 82 (224)
T smart00828 75 EVIHHIKD 82 (224)
T ss_pred HHHHhCCC
Confidence 99888865
No 92
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.23 E-value=8.6e-11 Score=98.89 Aligned_cols=86 Identities=20% Similarity=0.196 Sum_probs=66.6
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCE
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDI 199 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~ 199 (213)
..++.+|||+|||+|+.+..++.. ++ .+|+|+|+|+.++..++......+. ..++.++.+|+..... .++||+
T Consensus 120 ~l~g~~VLDIGCG~G~~~~~la~~-g~-~~V~GiD~S~~~l~q~~a~~~~~~~----~~~i~~~~~d~e~lp~-~~~FD~ 192 (322)
T PRK15068 120 PLKGRTVLDVGCGNGYHMWRMLGA-GA-KLVVGIDPSQLFLCQFEAVRKLLGN----DQRAHLLPLGIEQLPA-LKAFDT 192 (322)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHHHHHHhcCC----CCCeEEEeCCHHHCCC-cCCcCE
Confidence 346789999999999999999987 54 3799999999998765544332221 2479999999875433 468999
Q ss_pred EEEcCcCccCCCC
Q psy7826 200 IHVGGSIEDIPEG 212 (213)
Q Consensus 200 Ii~~~~~~~~p~~ 212 (213)
|++.++++|++++
T Consensus 193 V~s~~vl~H~~dp 205 (322)
T PRK15068 193 VFSMGVLYHRRSP 205 (322)
T ss_pred EEECChhhccCCH
Confidence 9999999998764
No 93
>PRK04266 fibrillarin; Provisional
Probab=99.23 E-value=1.2e-10 Score=93.29 Aligned_cols=79 Identities=23% Similarity=0.252 Sum_probs=64.5
Q ss_pred hCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC---CCCC
Q psy7826 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY---LDEA 195 (213)
Q Consensus 119 ~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~---~~~~ 195 (213)
.+.++.+|||+|||+|+++..+++.++ .++|+|+|+++.|++.+.++++. ..|+.++.+|+..+. .-..
T Consensus 69 ~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~-------~~nv~~i~~D~~~~~~~~~l~~ 140 (226)
T PRK04266 69 PIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEE-------RKNIIPILADARKPERYAHVVE 140 (226)
T ss_pred CCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhh-------cCCcEEEECCCCCcchhhhccc
Confidence 577899999999999999999999974 67999999999999988877665 357899999986421 1124
Q ss_pred CcCEEEEcCc
Q psy7826 196 PYDIIHVGGS 205 (213)
Q Consensus 196 ~fD~Ii~~~~ 205 (213)
+||+|+++..
T Consensus 141 ~~D~i~~d~~ 150 (226)
T PRK04266 141 KVDVIYQDVA 150 (226)
T ss_pred cCCEEEECCC
Confidence 6999998754
No 94
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.23 E-value=1.2e-10 Score=95.65 Aligned_cols=109 Identities=23% Similarity=0.290 Sum_probs=78.5
Q ss_pred CCCCccccCCCCccCcHHHHHHHHHHHh-hhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHh
Q psy7826 90 YANCITNIGYGAHMQAPFQQAMVLDDLS-EELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVI 168 (213)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~ 168 (213)
|....+.++.+..++.+.....+-..+. ....++.+|||+|||+|..+..++... +..+++++|+++.+++.+++++.
T Consensus 75 f~~~~~~~~~~~lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 75 FWGLDFKVSPGVLIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred EcCcEEEECCCceeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHH
Confidence 3334444555555655554332222221 124567799999999999999999986 66899999999999999999987
Q ss_pred hCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEEEcCc
Q psy7826 169 SGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGS 205 (213)
Q Consensus 169 ~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~ 205 (213)
... ..++.++.+|...... .++||+|+++..
T Consensus 154 ~~~-----~~~i~~~~~d~~~~~~-~~~fD~Iv~npP 184 (275)
T PRK09328 154 HGL-----GARVEFLQGDWFEPLP-GGRFDLIVSNPP 184 (275)
T ss_pred hCC-----CCcEEEEEccccCcCC-CCceeEEEECCC
Confidence 222 4589999999875443 358999999854
No 95
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.22 E-value=3.1e-12 Score=89.19 Aligned_cols=79 Identities=16% Similarity=0.295 Sum_probs=51.1
Q ss_pred EEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC--CCCCcCEEEEcC
Q psy7826 127 LDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL--DEAPYDIIHVGG 204 (213)
Q Consensus 127 LDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~--~~~~fD~Ii~~~ 204 (213)
||+|||+|..+..+++.+ +..+++++|+|+.+++.+++++...+ ..+......+..+... ..++||+|++..
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~ 74 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELG-----NDNFERLRFDVLDLFDYDPPESFDLVVASN 74 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT--------EEEEE--SSS---CCC----SEEEEE-
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC-----CcceeEEEeecCChhhcccccccceehhhh
Confidence 799999999999999996 66899999999999999999988766 3444444444432221 124899999999
Q ss_pred cCccCCC
Q psy7826 205 SIEDIPE 211 (213)
Q Consensus 205 ~~~~~p~ 211 (213)
+++|+++
T Consensus 75 vl~~l~~ 81 (99)
T PF08242_consen 75 VLHHLED 81 (99)
T ss_dssp TTS--S-
T ss_pred hHhhhhh
Confidence 9999854
No 96
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.21 E-value=1.1e-10 Score=102.36 Aligned_cols=79 Identities=24% Similarity=0.357 Sum_probs=66.7
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC----CCC
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL----DEA 195 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~----~~~ 195 (213)
..++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|++|++.++ ..+++++++|+.+... ...
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~-----~~~v~~~~~d~~~~l~~~~~~~~ 366 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNG-----LDNVTFYHANLEEDFTDQPWALG 366 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEEeChHHhhhhhhhhcC
Confidence 5677899999999999999999874 699999999999999999999888 5689999999864321 234
Q ss_pred CcCEEEEcCcC
Q psy7826 196 PYDIIHVGGSI 206 (213)
Q Consensus 196 ~fD~Ii~~~~~ 206 (213)
+||+|++|..-
T Consensus 367 ~fD~Vi~dPPr 377 (443)
T PRK13168 367 GFDKVLLDPPR 377 (443)
T ss_pred CCCEEEECcCC
Confidence 79999998653
No 97
>PRK14967 putative methyltransferase; Provisional
Probab=99.21 E-value=3e-10 Score=90.83 Aligned_cols=77 Identities=23% Similarity=0.377 Sum_probs=64.6
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCE
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDI 199 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~ 199 (213)
+.++.+|||+|||+|.++..+++. + ..+++++|+++.+++.+++++...+ . +++++.+|+....+ ..+||+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~-----~-~~~~~~~d~~~~~~-~~~fD~ 104 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAG-----V-DVDVRRGDWARAVE-FRPFDV 104 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhC-----C-eeEEEECchhhhcc-CCCeeE
Confidence 567889999999999999999876 3 2599999999999999999998876 2 58899999876433 358999
Q ss_pred EEEcCc
Q psy7826 200 IHVGGS 205 (213)
Q Consensus 200 Ii~~~~ 205 (213)
|+++..
T Consensus 105 Vi~npP 110 (223)
T PRK14967 105 VVSNPP 110 (223)
T ss_pred EEECCC
Confidence 999864
No 98
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.20 E-value=7e-11 Score=92.52 Aligned_cols=81 Identities=17% Similarity=0.190 Sum_probs=68.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCC---CCCCCCcC
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKG---YLDEAPYD 198 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~---~~~~~~fD 198 (213)
...++||+|||+|..+..+++.. |+..++|+|+++.+++.|++++.+.+ ..+++++++|+... ..+.+++|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~-----l~ni~~i~~d~~~~~~~~~~~~~~d 89 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLG-----LKNLHVLCGDANELLDKFFPDGSLS 89 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhC-----CCCEEEEccCHHHHHHhhCCCCcee
Confidence 45689999999999999999985 77899999999999999999998887 46899999999632 23335799
Q ss_pred EEEEcCcCcc
Q psy7826 199 IIHVGGSIED 208 (213)
Q Consensus 199 ~Ii~~~~~~~ 208 (213)
.|+++...++
T Consensus 90 ~v~~~~pdpw 99 (194)
T TIGR00091 90 KVFLNFPDPW 99 (194)
T ss_pred EEEEECCCcC
Confidence 9999875443
No 99
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.19 E-value=2.8e-10 Score=94.47 Aligned_cols=90 Identities=26% Similarity=0.305 Sum_probs=67.9
Q ss_pred HHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCC
Q psy7826 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 189 (213)
Q Consensus 110 ~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~ 189 (213)
...++.+.....++.+|||+|||+|.++..+++. +. .+|+|+|+++.+++.+++|+..+++ ..++.+..++...
T Consensus 147 ~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~-g~-~~V~avDid~~al~~a~~n~~~n~~----~~~~~~~~~~~~~ 220 (288)
T TIGR00406 147 SLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL-GA-AKVVGIDIDPLAVESARKNAELNQV----SDRLQVKLIYLEQ 220 (288)
T ss_pred HHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHHcCC----CcceEEEeccccc
Confidence 4445555433567899999999999999888765 43 5999999999999999999998875 3456777776432
Q ss_pred CCCCCCCcCEEEEcCcCc
Q psy7826 190 GYLDEAPYDIIHVGGSIE 207 (213)
Q Consensus 190 ~~~~~~~fD~Ii~~~~~~ 207 (213)
.. .++||+|+++...+
T Consensus 221 -~~-~~~fDlVvan~~~~ 236 (288)
T TIGR00406 221 -PI-EGKADVIVANILAE 236 (288)
T ss_pred -cc-CCCceEEEEecCHH
Confidence 22 35899999986543
No 100
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.19 E-value=4.5e-11 Score=91.99 Aligned_cols=78 Identities=23% Similarity=0.420 Sum_probs=64.5
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC--CCCCCc
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY--LDEAPY 197 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~--~~~~~f 197 (213)
++|+.+|||+|||.|.+..+|.+. .+.+.+|+|++++.+..+.++ .+.++++|+.+.. .++++|
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r------------Gv~Viq~Dld~gL~~f~d~sF 76 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR------------GVSVIQGDLDEGLADFPDQSF 76 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc------------CCCEEECCHHHhHhhCCCCCc
Confidence 578999999999999999999886 347999999999998877765 4679999987332 345799
Q ss_pred CEEEEcCcCccCCC
Q psy7826 198 DIIHVGGSIEDIPE 211 (213)
Q Consensus 198 D~Ii~~~~~~~~p~ 211 (213)
|.||++.++.++..
T Consensus 77 D~VIlsqtLQ~~~~ 90 (193)
T PF07021_consen 77 DYVILSQTLQAVRR 90 (193)
T ss_pred cEEehHhHHHhHhH
Confidence 99999999887654
No 101
>PTZ00146 fibrillarin; Provisional
Probab=99.18 E-value=1.5e-10 Score=95.18 Aligned_cols=80 Identities=21% Similarity=0.222 Sum_probs=63.8
Q ss_pred hCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC---CCCC
Q psy7826 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY---LDEA 195 (213)
Q Consensus 119 ~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~---~~~~ 195 (213)
.+.++.+|||+|||+|+++.++++.+++.++|+++|+++.+.+...+.+.. .+||.++.+|+..+. ....
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-------r~NI~~I~~Da~~p~~y~~~~~ 201 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-------RPNIVPIIEDARYPQKYRMLVP 201 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-------cCCCEEEECCccChhhhhcccC
Confidence 467899999999999999999999998788999999998876555555433 257899999986431 1124
Q ss_pred CcCEEEEcCc
Q psy7826 196 PYDIIHVGGS 205 (213)
Q Consensus 196 ~fD~Ii~~~~ 205 (213)
+||+|+++.+
T Consensus 202 ~vDvV~~Dva 211 (293)
T PTZ00146 202 MVDVIFADVA 211 (293)
T ss_pred CCCEEEEeCC
Confidence 7999999986
No 102
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.18 E-value=3.3e-10 Score=92.21 Aligned_cols=111 Identities=16% Similarity=0.170 Sum_probs=77.4
Q ss_pred CCCCCCCccccCCCCccCcHHHHHHHHHHHhh-h-CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHH
Q psy7826 87 WRPYANCITNIGYGAHMQAPFQQAMVLDDLSE-E-LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRAT 164 (213)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~ 164 (213)
...|....+.+..+.++..+.....+-..+.. . ..++.+|||+|||+|.++..+++.. +..+++++|+|+.+++.++
T Consensus 49 ~~~f~g~~~~v~~~vf~pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~ 127 (251)
T TIGR03704 49 WAEFCGLRIAVDPGVFVPRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCAR 127 (251)
T ss_pred cCeEcCeEEEECCCCcCCCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHH
Confidence 44455555566666666555544333222210 1 1234589999999999999999885 4569999999999999999
Q ss_pred HHHhhCCCCCccCCCeEEEEcCCCCCCCC--CCCcCEEEEcCcC
Q psy7826 165 HNVISGNPEFVKDGRIKFVLGDGRKGYLD--EAPYDIIHVGGSI 206 (213)
Q Consensus 165 ~~~~~~gl~~~~~~~v~~~~~d~~~~~~~--~~~fD~Ii~~~~~ 206 (213)
+|++.++ ++++++|+...... .++||+|++|...
T Consensus 128 ~N~~~~~--------~~~~~~D~~~~l~~~~~~~fDlVv~NPPy 163 (251)
T TIGR03704 128 RNLADAG--------GTVHEGDLYDALPTALRGRVDILAANAPY 163 (251)
T ss_pred HHHHHcC--------CEEEEeechhhcchhcCCCEeEEEECCCC
Confidence 9998754 37888998653321 2479999999753
No 103
>PLN02672 methionine S-methyltransferase
Probab=99.18 E-value=2.8e-10 Score=107.62 Aligned_cols=115 Identities=18% Similarity=0.105 Sum_probs=85.2
Q ss_pred CCCCCccccCCCCccCcHHHHHHHHHHHhhhCC---CCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHH
Q psy7826 89 PYANCITNIGYGAHMQAPFQQAMVLDDLSEELT---EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATH 165 (213)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 165 (213)
.|....+.+..+..+++|.....+-. +..... ++.+|||+|||+|..+..+++.. +..+|+|+|+|+.+++.|++
T Consensus 83 ~F~~l~~~V~p~VLIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~ 160 (1082)
T PLN02672 83 NRKKLTMMEIPSIFIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWI 160 (1082)
T ss_pred EecCCceeeCCCcccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHH
Confidence 34444555677888999988765544 432211 24689999999999999999985 66799999999999999999
Q ss_pred HHhhCCCCC-----------ccCCCeEEEEcCCCCCCCC-CCCcCEEEEcCc
Q psy7826 166 NVISGNPEF-----------VKDGRIKFVLGDGRKGYLD-EAPYDIIHVGGS 205 (213)
Q Consensus 166 ~~~~~gl~~-----------~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~ 205 (213)
|++.++++. ....+++++++|+...... ..+||+|++|-.
T Consensus 161 Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPP 212 (1082)
T PLN02672 161 NLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIP 212 (1082)
T ss_pred HHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCC
Confidence 998765310 0024799999999865532 236999999854
No 104
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.18 E-value=3.7e-10 Score=95.45 Aligned_cols=93 Identities=26% Similarity=0.211 Sum_probs=74.3
Q ss_pred CcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEE
Q psy7826 104 QAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFV 183 (213)
Q Consensus 104 ~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~ 183 (213)
..|.....++.+. ..+++.+|||.|||+|.++...+.. + .+++|+|+++.+++.+++|++.+| ..++.+.
T Consensus 166 l~~~la~~~~~l~--~~~~g~~vLDp~cGtG~~lieaa~~-~--~~v~g~Di~~~~~~~a~~nl~~~g-----~~~i~~~ 235 (329)
T TIGR01177 166 MDPKLARAMVNLA--RVTEGDRVLDPFCGTGGFLIEAGLM-G--AKVIGCDIDWKMVAGARINLEHYG-----IEDFFVK 235 (329)
T ss_pred CCHHHHHHHHHHh--CCCCcCEEEECCCCCCHHHHHHHHh-C--CeEEEEcCCHHHHHHHHHHHHHhC-----CCCCeEE
Confidence 3455555566655 5788899999999999998886654 3 689999999999999999999988 4568999
Q ss_pred EcCCCCCCCCCCCcCEEEEcCcC
Q psy7826 184 LGDGRKGYLDEAPYDIIHVGGSI 206 (213)
Q Consensus 184 ~~d~~~~~~~~~~fD~Ii~~~~~ 206 (213)
++|+........+||+|++|...
T Consensus 236 ~~D~~~l~~~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 236 RGDATKLPLSSESVDAIATDPPY 258 (329)
T ss_pred ecchhcCCcccCCCCEEEECCCC
Confidence 99998643334689999998643
No 105
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.18 E-value=1.5e-10 Score=97.28 Aligned_cols=76 Identities=18% Similarity=0.132 Sum_probs=64.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC-CCCCcCEE
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-DEAPYDII 200 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~-~~~~fD~I 200 (213)
++.+|||+|||+|.++..+++. + .+|+|+|+++.+++.|+++++.++ ..+++++++|+..... ...+||+|
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~-~--~~V~gvD~s~~av~~A~~n~~~~~-----l~~v~~~~~D~~~~~~~~~~~~D~V 244 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP-G--MQLTGIEISAEAIACAKQSAAELG-----LTNVQFQALDSTQFATAQGEVPDLV 244 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc-C--CEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEEcCHHHHHHhcCCCCeEE
Confidence 5689999999999999999986 3 699999999999999999999988 5689999999874322 22469999
Q ss_pred EEcCc
Q psy7826 201 HVGGS 205 (213)
Q Consensus 201 i~~~~ 205 (213)
++|..
T Consensus 245 v~dPP 249 (315)
T PRK03522 245 LVNPP 249 (315)
T ss_pred EECCC
Confidence 99953
No 106
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.17 E-value=1.9e-10 Score=96.98 Aligned_cols=82 Identities=24% Similarity=0.299 Sum_probs=68.4
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEE
Q psy7826 121 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 200 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~I 200 (213)
.++.+|||+|||+|..+..+++.+ +..+++++|+|+++++.++++.. ..+++++.+|+.....+.++||+|
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~--------~~~i~~i~gD~e~lp~~~~sFDvV 182 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP--------LKECKIIEGDAEDLPFPTDYADRY 182 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhh--------ccCCeEEeccHHhCCCCCCceeEE
Confidence 467899999999999999999886 44699999999999999998754 246789999987543344689999
Q ss_pred EEcCcCccCCC
Q psy7826 201 HVGGSIEDIPE 211 (213)
Q Consensus 201 i~~~~~~~~p~ 211 (213)
+++.+++++++
T Consensus 183 Is~~~L~~~~d 193 (340)
T PLN02490 183 VSAGSIEYWPD 193 (340)
T ss_pred EEcChhhhCCC
Confidence 99999998876
No 107
>PLN03075 nicotianamine synthase; Provisional
Probab=99.17 E-value=4.8e-10 Score=92.46 Aligned_cols=84 Identities=21% Similarity=0.138 Sum_probs=66.7
Q ss_pred CCCCEEEEEcCCccHHHHH-HHHHcCCCCEEEEEeCChHHHHHHHHHHhh-CCCCCccCCCeEEEEcCCCCCCCCCCCcC
Q psy7826 121 TEGKKVLDIGSGNGYFTAL-LAWCVGKTGKVIGIEHIPQLVQRATHNVIS-GNPEFVKDGRIKFVLGDGRKGYLDEAPYD 198 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~-la~~~~~~~~v~gvD~s~~~l~~a~~~~~~-~gl~~~~~~~v~~~~~d~~~~~~~~~~fD 198 (213)
.++++|+|+|||+|.+|.. ++....++++++++|+++++++.|++.+.+ .++ .++++|.++|+.+.....+.||
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL----~~rV~F~~~Da~~~~~~l~~FD 197 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL----SKRMFFHTADVMDVTESLKEYD 197 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc----cCCcEEEECchhhcccccCCcC
Confidence 3678999999998876544 443335788999999999999999999954 665 4679999999986443346899
Q ss_pred EEEEcCcCccC
Q psy7826 199 IIHVGGSIEDI 209 (213)
Q Consensus 199 ~Ii~~~~~~~~ 209 (213)
+|++. ++.++
T Consensus 198 lVF~~-ALi~~ 207 (296)
T PLN03075 198 VVFLA-ALVGM 207 (296)
T ss_pred EEEEe-ccccc
Confidence 99999 76665
No 108
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.17 E-value=3.8e-10 Score=88.55 Aligned_cols=92 Identities=13% Similarity=0.082 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEc
Q psy7826 106 PFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLG 185 (213)
Q Consensus 106 ~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~ 185 (213)
..+...++..+. ...++.+|||+|||+|.++..++.. +. .+|+++|+++.+++.+++|++.++ ..+++++++
T Consensus 38 d~v~e~l~~~l~-~~~~~~~vLDl~~GsG~l~l~~lsr-~a-~~V~~vE~~~~a~~~a~~Nl~~~~-----~~~v~~~~~ 109 (199)
T PRK10909 38 DRVRETLFNWLA-PVIVDARCLDCFAGSGALGLEALSR-YA-AGATLLEMDRAVAQQLIKNLATLK-----AGNARVVNT 109 (199)
T ss_pred HHHHHHHHHHHh-hhcCCCEEEEcCCCccHHHHHHHHc-CC-CEEEEEECCHHHHHHHHHHHHHhC-----CCcEEEEEc
Confidence 334344555553 2246779999999999999865554 23 699999999999999999999988 468999999
Q ss_pred CCCCCCC-CCCCcCEEEEcCc
Q psy7826 186 DGRKGYL-DEAPYDIIHVGGS 205 (213)
Q Consensus 186 d~~~~~~-~~~~fD~Ii~~~~ 205 (213)
|+..... ...+||+|++|..
T Consensus 110 D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 110 NALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred hHHHHHhhcCCCceEEEECCC
Confidence 9874332 2346999999976
No 109
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.17 E-value=3.5e-10 Score=95.85 Aligned_cols=88 Identities=17% Similarity=0.239 Sum_probs=69.8
Q ss_pred HHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCC
Q psy7826 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 189 (213)
Q Consensus 110 ~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~ 189 (213)
..+++.+. .....+|||+|||+|.++..+++.. +..+|+++|+++.+++.++++++.+++ ..+++.+|...
T Consensus 186 ~lLl~~l~--~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l------~~~~~~~D~~~ 256 (342)
T PRK09489 186 QLLLSTLT--PHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGL------EGEVFASNVFS 256 (342)
T ss_pred HHHHHhcc--ccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC------CCEEEEccccc
Confidence 44555552 2334589999999999999999984 667999999999999999999998873 35778888765
Q ss_pred CCCCCCCcCEEEEcCcCcc
Q psy7826 190 GYLDEAPYDIIHVGGSIED 208 (213)
Q Consensus 190 ~~~~~~~fD~Ii~~~~~~~ 208 (213)
.. .++||+|++|..++.
T Consensus 257 ~~--~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 257 DI--KGRFDMIISNPPFHD 273 (342)
T ss_pred cc--CCCccEEEECCCccC
Confidence 33 357999999987764
No 110
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.17 E-value=2.7e-10 Score=95.31 Aligned_cols=86 Identities=16% Similarity=0.151 Sum_probs=64.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCE
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDI 199 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~ 199 (213)
..++++|||+|||+|+++..++.. ++ ..|+|+|+|+.++..++...+..+. ..++.+..+++..... ..+||+
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~-g~-~~v~GiDpS~~ml~q~~~~~~~~~~----~~~v~~~~~~ie~lp~-~~~FD~ 191 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGH-GA-KSLVGIDPTVLFLCQFEAVRKLLDN----DKRAILEPLGIEQLHE-LYAFDT 191 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHHHHHHHhcc----CCCeEEEECCHHHCCC-CCCcCE
Confidence 456789999999999999888876 44 4899999999998765433222111 3467888888765333 347999
Q ss_pred EEEcCcCccCCCC
Q psy7826 200 IHVGGSIEDIPEG 212 (213)
Q Consensus 200 Ii~~~~~~~~p~~ 212 (213)
|++.+++.|++++
T Consensus 192 V~s~gvL~H~~dp 204 (314)
T TIGR00452 192 VFSMGVLYHRKSP 204 (314)
T ss_pred EEEcchhhccCCH
Confidence 9999999998764
No 111
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.16 E-value=3.5e-10 Score=93.90 Aligned_cols=93 Identities=22% Similarity=0.350 Sum_probs=76.4
Q ss_pred cCcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEE
Q psy7826 103 MQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKF 182 (213)
Q Consensus 103 ~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~ 182 (213)
+..+.+...+++.+ .+.++++|||+|||+|.+|..+++.. .+|+++|+++.+++.+++++...+. ..++++
T Consensus 19 L~d~~i~~~Iv~~~--~~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~----~~~v~i 89 (294)
T PTZ00338 19 LKNPLVLDKIVEKA--AIKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPL----ASKLEV 89 (294)
T ss_pred cCCHHHHHHHHHhc--CCCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCC----CCcEEE
Confidence 45677777788877 57788999999999999999999873 5899999999999999999887653 468999
Q ss_pred EEcCCCCCCCCCCCcCEEEEcCcC
Q psy7826 183 VLGDGRKGYLDEAPYDIIHVGGSI 206 (213)
Q Consensus 183 ~~~d~~~~~~~~~~fD~Ii~~~~~ 206 (213)
+++|+..... ..||.|++|...
T Consensus 90 i~~Dal~~~~--~~~d~VvaNlPY 111 (294)
T PTZ00338 90 IEGDALKTEF--PYFDVCVANVPY 111 (294)
T ss_pred EECCHhhhcc--cccCEEEecCCc
Confidence 9999975332 368999987643
No 112
>PHA03411 putative methyltransferase; Provisional
Probab=99.16 E-value=5.1e-10 Score=91.18 Aligned_cols=80 Identities=16% Similarity=0.187 Sum_probs=65.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCE
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDI 199 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~ 199 (213)
...+.+|||+|||+|..+..+++.. +..+|+++|+++.+++.++++ .++++++++|+..... ..+||+
T Consensus 62 ~~~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n----------~~~v~~v~~D~~e~~~-~~kFDl 129 (279)
T PHA03411 62 AHCTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRL----------LPEAEWITSDVFEFES-NEKFDV 129 (279)
T ss_pred cccCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHh----------CcCCEEEECchhhhcc-cCCCcE
Confidence 3455799999999999999988874 346999999999999999887 3468899999986433 357999
Q ss_pred EEEcCcCccCCC
Q psy7826 200 IHVGGSIEDIPE 211 (213)
Q Consensus 200 Ii~~~~~~~~p~ 211 (213)
|++|....+.+.
T Consensus 130 IIsNPPF~~l~~ 141 (279)
T PHA03411 130 VISNPPFGKINT 141 (279)
T ss_pred EEEcCCccccCc
Confidence 999998877543
No 113
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.15 E-value=3.7e-10 Score=97.13 Aligned_cols=86 Identities=26% Similarity=0.325 Sum_probs=69.8
Q ss_pred HHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCC
Q psy7826 111 MVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKG 190 (213)
Q Consensus 111 ~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~ 190 (213)
.+++.+ .++++.+|||+|||+|..+..+++..+ .+|+|+|+|+++++.++++... . ++++..+|....
T Consensus 158 ~l~~~l--~l~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS~~~l~~A~~~~~~-------l-~v~~~~~D~~~l 225 (383)
T PRK11705 158 LICRKL--QLKPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTISAEQQKLAQERCAG-------L-PVEIRLQDYRDL 225 (383)
T ss_pred HHHHHh--CCCCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhcc-------C-eEEEEECchhhc
Confidence 344444 467899999999999999999998753 6999999999999999998742 2 478888887642
Q ss_pred CCCCCCcCEEEEcCcCccCCC
Q psy7826 191 YLDEAPYDIIHVGGSIEDIPE 211 (213)
Q Consensus 191 ~~~~~~fD~Ii~~~~~~~~p~ 211 (213)
.++||.|++..+++|++.
T Consensus 226 ---~~~fD~Ivs~~~~ehvg~ 243 (383)
T PRK11705 226 ---NGQFDRIVSVGMFEHVGP 243 (383)
T ss_pred ---CCCCCEEEEeCchhhCCh
Confidence 257999999999888753
No 114
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.15 E-value=3.9e-10 Score=91.73 Aligned_cols=82 Identities=28% Similarity=0.373 Sum_probs=61.4
Q ss_pred HHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCC
Q psy7826 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 189 (213)
Q Consensus 110 ~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~ 189 (213)
..+++.+.....++.+|||+|||+|..+..+++. +. .+|+|+|+++.+++.|++|++.+++ ...+.+..+|
T Consensus 107 ~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g~-~~v~giDis~~~l~~A~~n~~~~~~----~~~~~~~~~~--- 177 (250)
T PRK00517 107 RLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-GA-KKVLAVDIDPQAVEAARENAELNGV----ELNVYLPQGD--- 177 (250)
T ss_pred HHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHHcCC----CceEEEccCC---
Confidence 3455555434567899999999999999887765 44 4799999999999999999988773 2344443332
Q ss_pred CCCCCCCcCEEEEcCc
Q psy7826 190 GYLDEAPYDIIHVGGS 205 (213)
Q Consensus 190 ~~~~~~~fD~Ii~~~~ 205 (213)
.+||+|+++..
T Consensus 178 -----~~fD~Vvani~ 188 (250)
T PRK00517 178 -----LKADVIVANIL 188 (250)
T ss_pred -----CCcCEEEEcCc
Confidence 16999998754
No 115
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.15 E-value=1.8e-10 Score=90.11 Aligned_cols=79 Identities=23% Similarity=0.362 Sum_probs=62.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC--CCCCCc
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY--LDEAPY 197 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~--~~~~~f 197 (213)
++++.+|||+|||+|..+..+++.. ...++|+|+++++++.++++ +++++++|+.... ...++|
T Consensus 11 i~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~------------~~~~~~~d~~~~l~~~~~~sf 76 (194)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVAR------------GVNVIQGDLDEGLEAFPDKSF 76 (194)
T ss_pred cCCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHc------------CCeEEEEEhhhcccccCCCCc
Confidence 4577899999999999999888763 25789999999999887642 3577888876421 234589
Q ss_pred CEEEEcCcCccCCCC
Q psy7826 198 DIIHVGGSIEDIPEG 212 (213)
Q Consensus 198 D~Ii~~~~~~~~p~~ 212 (213)
|+|+++.+++|++++
T Consensus 77 D~Vi~~~~l~~~~d~ 91 (194)
T TIGR02081 77 DYVILSQTLQATRNP 91 (194)
T ss_pred CEEEEhhHhHcCcCH
Confidence 999999999999763
No 116
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.14 E-value=1.3e-10 Score=94.02 Aligned_cols=96 Identities=18% Similarity=0.245 Sum_probs=77.6
Q ss_pred HHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCC
Q psy7826 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 189 (213)
Q Consensus 110 ~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~ 189 (213)
..++..+. ...+.++|||+|+++|+.|.++|+.++++++++++|.+++..+.|++++++.|+ .++|+++.+|+.+
T Consensus 68 g~lL~~l~-~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~----~~~I~~~~G~a~e 142 (247)
T PLN02589 68 GQFLNMLL-KLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV----AHKIDFREGPALP 142 (247)
T ss_pred HHHHHHHH-HHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC----CCceEEEeccHHH
Confidence 34444443 344567999999999999999999887788999999999999999999999997 6789999999874
Q ss_pred CCCC-------CCCcCEEEEcCcCccCC
Q psy7826 190 GYLD-------EAPYDIIHVGGSIEDIP 210 (213)
Q Consensus 190 ~~~~-------~~~fD~Ii~~~~~~~~p 210 (213)
..+. .++||.||+++.....+
T Consensus 143 ~L~~l~~~~~~~~~fD~iFiDadK~~Y~ 170 (247)
T PLN02589 143 VLDQMIEDGKYHGTFDFIFVDADKDNYI 170 (247)
T ss_pred HHHHHHhccccCCcccEEEecCCHHHhH
Confidence 3221 25899999998765543
No 117
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.13 E-value=5.4e-10 Score=91.99 Aligned_cols=91 Identities=21% Similarity=0.175 Sum_probs=70.6
Q ss_pred ccCcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeE
Q psy7826 102 HMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIK 181 (213)
Q Consensus 102 ~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~ 181 (213)
++..+.+...+++.+ .+.++.+|||+|||+|.+|..+++.. .+|+|+|+++.+++.+++++.. ++++
T Consensus 24 fl~~~~i~~~i~~~l--~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~--------~~v~ 90 (272)
T PRK00274 24 FLIDENILDKIVDAA--GPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE--------DNLT 90 (272)
T ss_pred cCCCHHHHHHHHHhc--CCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc--------CceE
Confidence 345556667777777 46788899999999999999999984 4899999999999999987632 4799
Q ss_pred EEEcCCCCCCCCCCCcCEEEEcCc
Q psy7826 182 FVLGDGRKGYLDEAPYDIIHVGGS 205 (213)
Q Consensus 182 ~~~~d~~~~~~~~~~fD~Ii~~~~ 205 (213)
++++|+.....+.-.+|.|++|..
T Consensus 91 ~i~~D~~~~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 91 IIEGDALKVDLSELQPLKVVANLP 114 (272)
T ss_pred EEEChhhcCCHHHcCcceEEEeCC
Confidence 999998754332211588888753
No 118
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.12 E-value=9.4e-10 Score=87.27 Aligned_cols=91 Identities=20% Similarity=0.379 Sum_probs=72.4
Q ss_pred HHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC
Q psy7826 112 VLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY 191 (213)
Q Consensus 112 ~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~ 191 (213)
++..+ ...++.+|||+|||+|..+..+++..+..++++++|+++.+++.++++.. . ..++.+..+|+.+..
T Consensus 31 ~~~~~--~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~-----~~~i~~~~~d~~~~~ 101 (223)
T TIGR01934 31 AVKLI--GVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--L-----PLNIEFIQADAEALP 101 (223)
T ss_pred HHHHh--ccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--c-----CCCceEEecchhcCC
Confidence 44444 24477899999999999999999986333699999999999999999875 2 357899999987544
Q ss_pred CCCCCcCEEEEcCcCccCCC
Q psy7826 192 LDEAPYDIIHVGGSIEDIPE 211 (213)
Q Consensus 192 ~~~~~fD~Ii~~~~~~~~p~ 211 (213)
...++||+|+++.+++++++
T Consensus 102 ~~~~~~D~i~~~~~~~~~~~ 121 (223)
T TIGR01934 102 FEDNSFDAVTIAFGLRNVTD 121 (223)
T ss_pred CCCCcEEEEEEeeeeCCccc
Confidence 34458999999988887765
No 119
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.12 E-value=8.6e-10 Score=90.11 Aligned_cols=91 Identities=26% Similarity=0.327 Sum_probs=74.1
Q ss_pred ccCcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeE
Q psy7826 102 HMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIK 181 (213)
Q Consensus 102 ~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~ 181 (213)
++..+.....+++.+ ...++.+|||+|||+|.+|..+++. + .+++++|+++.+++.+++++.. .++++
T Consensus 11 fl~d~~~~~~iv~~~--~~~~~~~VLEIG~G~G~lt~~L~~~-~--~~v~~vEid~~~~~~l~~~~~~-------~~~v~ 78 (258)
T PRK14896 11 FLIDDRVVDRIVEYA--EDTDGDPVLEIGPGKGALTDELAKR-A--KKVYAIELDPRLAEFLRDDEIA-------AGNVE 78 (258)
T ss_pred ccCCHHHHHHHHHhc--CCCCcCeEEEEeCccCHHHHHHHHh-C--CEEEEEECCHHHHHHHHHHhcc-------CCCEE
Confidence 355677777788877 4678899999999999999999998 3 5899999999999999988754 35899
Q ss_pred EEEcCCCCCCCCCCCcCEEEEcCcC
Q psy7826 182 FVLGDGRKGYLDEAPYDIIHVGGSI 206 (213)
Q Consensus 182 ~~~~d~~~~~~~~~~fD~Ii~~~~~ 206 (213)
++++|+..... ..||.|++|...
T Consensus 79 ii~~D~~~~~~--~~~d~Vv~NlPy 101 (258)
T PRK14896 79 IIEGDALKVDL--PEFNKVVSNLPY 101 (258)
T ss_pred EEEeccccCCc--hhceEEEEcCCc
Confidence 99999975332 258999998654
No 120
>KOG2915|consensus
Probab=99.12 E-value=3.2e-10 Score=90.96 Aligned_cols=109 Identities=19% Similarity=0.223 Sum_probs=91.3
Q ss_pred ccccCCCCccCcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCC
Q psy7826 94 ITNIGYGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPE 173 (213)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~ 173 (213)
.+....+..|..+...++++.+| .+.||.+|+|.|+|+|+.+.++++.++|.|+++.+|..+.+.+.|.+.++..|+
T Consensus 79 Tl~LphRTQI~Yt~Dia~I~~~L--~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi- 155 (314)
T KOG2915|consen 79 TLALPHRTQILYTPDIAMILSML--EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI- 155 (314)
T ss_pred hhhccCcceEEecccHHHHHHHh--cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC-
Confidence 34455566666666668888988 699999999999999999999999999999999999999999999999999997
Q ss_pred CccCCCeEEEEcCCC-CCCCC-CCCcCEEEEcCcCcc
Q psy7826 174 FVKDGRIKFVLGDGR-KGYLD-EAPYDIIHVGGSIED 208 (213)
Q Consensus 174 ~~~~~~v~~~~~d~~-~~~~~-~~~fD~Ii~~~~~~~ 208 (213)
.+++++.+.|+. .++.. ...+|.|+.|..-++
T Consensus 156 ---~~~vt~~hrDVc~~GF~~ks~~aDaVFLDlPaPw 189 (314)
T KOG2915|consen 156 ---GDNVTVTHRDVCGSGFLIKSLKADAVFLDLPAPW 189 (314)
T ss_pred ---CcceEEEEeecccCCccccccccceEEEcCCChh
Confidence 789999999997 33332 457999999875443
No 121
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.11 E-value=9.3e-10 Score=87.38 Aligned_cols=89 Identities=21% Similarity=0.166 Sum_probs=65.4
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCC-------CCccCCCeEEEEcCCCCCCCC
Q psy7826 121 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNP-------EFVKDGRIKFVLGDGRKGYLD 193 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl-------~~~~~~~v~~~~~d~~~~~~~ 193 (213)
.++.+|||+|||.|..+.+||++ | .+|+|+|+|+.+++.+.+....... +.....+|+++++|+.+....
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~-G--~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ-G--HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC-C--CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 56779999999999999999987 5 6899999999999986442211000 000024689999999854322
Q ss_pred -CCCcCEEEEcCcCccCCCC
Q psy7826 194 -EAPYDIIHVGGSIEDIPEG 212 (213)
Q Consensus 194 -~~~fD~Ii~~~~~~~~p~~ 212 (213)
.++||.|+-..+++++|++
T Consensus 110 ~~~~fD~i~D~~~~~~l~~~ 129 (213)
T TIGR03840 110 DLGPVDAVYDRAALIALPEE 129 (213)
T ss_pred cCCCcCEEEechhhccCCHH
Confidence 3579999999988888753
No 122
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.10 E-value=4.4e-10 Score=89.03 Aligned_cols=74 Identities=19% Similarity=0.361 Sum_probs=59.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC--------
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-------- 191 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~-------- 191 (213)
++++.+|||+|||||.++..+++..++.++|+|+|+++ + .+ .++++++++|+....
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~-----~~~v~~i~~D~~~~~~~~~i~~~ 112 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DP-----IVGVDFLQGDFRDELVLKALLER 112 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cC-----CCCcEEEecCCCChHHHHHHHHH
Confidence 57788999999999999999999976668999999997 1 12 357899999998631
Q ss_pred CCCCCcCEEEEcCcCccC
Q psy7826 192 LDEAPYDIIHVGGSIEDI 209 (213)
Q Consensus 192 ~~~~~fD~Ii~~~~~~~~ 209 (213)
...++||+|+++.++...
T Consensus 113 ~~~~~~D~V~S~~~~~~~ 130 (209)
T PRK11188 113 VGDSKVQVVMSDMAPNMS 130 (209)
T ss_pred hCCCCCCEEecCCCCccC
Confidence 234689999999876543
No 123
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.10 E-value=9.2e-10 Score=93.99 Aligned_cols=89 Identities=20% Similarity=0.138 Sum_probs=72.3
Q ss_pred HHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCC-
Q psy7826 112 VLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKG- 190 (213)
Q Consensus 112 ~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~- 190 (213)
++..+ ....+..+||+|||+|..+..+|+.. |+..++|+|+++.+++.+.+++...+ ..|+.++++|+...
T Consensus 114 ~~~~~--~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~g-----L~NV~~i~~DA~~ll 185 (390)
T PRK14121 114 FLDFI--SKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLN-----LKNLLIINYDARLLL 185 (390)
T ss_pred HHHHh--cCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEECCHHHhh
Confidence 44444 24456789999999999999999995 78899999999999999999999888 57899999998632
Q ss_pred -CCCCCCcCEEEEcCcCcc
Q psy7826 191 -YLDEAPYDIIHVGGSIED 208 (213)
Q Consensus 191 -~~~~~~fD~Ii~~~~~~~ 208 (213)
..+.+++|.|+++...++
T Consensus 186 ~~~~~~s~D~I~lnFPdPW 204 (390)
T PRK14121 186 ELLPSNSVEKIFVHFPVPW 204 (390)
T ss_pred hhCCCCceeEEEEeCCCCc
Confidence 233468999999865443
No 124
>KOG1270|consensus
Probab=99.10 E-value=7.5e-11 Score=94.26 Aligned_cols=80 Identities=25% Similarity=0.447 Sum_probs=62.4
Q ss_pred CCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCC----CeEEEEcCCCCCCCCCCCcC
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG----RIKFVLGDGRKGYLDEAPYD 198 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~----~v~~~~~d~~~~~~~~~~fD 198 (213)
|.+|||+|||.|.+|..||+. | .+|+|+|+++.+++.|++....... ... ++++.+.|++. .. +.||
T Consensus 90 g~~ilDvGCGgGLLSepLArl-g--a~V~GID~s~~~V~vA~~h~~~dP~---~~~~~~y~l~~~~~~~E~-~~--~~fD 160 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL-G--AQVTGIDASDDMVEVANEHKKMDPV---LEGAIAYRLEYEDTDVEG-LT--GKFD 160 (282)
T ss_pred CceEEEeccCccccchhhHhh-C--CeeEeecccHHHHHHHHHhhhcCch---hccccceeeehhhcchhh-cc--cccc
Confidence 478999999999999999998 5 7999999999999999999443321 011 25566666653 22 3599
Q ss_pred EEEEcCcCccCCC
Q psy7826 199 IIHVGGSIEDIPE 211 (213)
Q Consensus 199 ~Ii~~~~~~~~p~ 211 (213)
.|++..+++|+.+
T Consensus 161 aVvcsevleHV~d 173 (282)
T KOG1270|consen 161 AVVCSEVLEHVKD 173 (282)
T ss_pred eeeeHHHHHHHhC
Confidence 9999999999854
No 125
>PRK06922 hypothetical protein; Provisional
Probab=99.09 E-value=6.2e-10 Score=99.93 Aligned_cols=83 Identities=13% Similarity=0.312 Sum_probs=68.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC--CCCCCc
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY--LDEAPY 197 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~--~~~~~f 197 (213)
..++.+|||+|||+|..+..+++.. +..+++|+|+|+.+++.++++....+ .++.++++|..... .+.++|
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g------~~ie~I~gDa~dLp~~fedeSF 488 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEG------RSWNVIKGDAINLSSSFEKESV 488 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC------CCeEEEEcchHhCccccCCCCE
Confidence 4467899999999999999999885 67899999999999999999876544 36888999986422 234689
Q ss_pred CEEEEcCcCccC
Q psy7826 198 DIIHVGGSIEDI 209 (213)
Q Consensus 198 D~Ii~~~~~~~~ 209 (213)
|+|+++.+++++
T Consensus 489 DvVVsn~vLH~L 500 (677)
T PRK06922 489 DTIVYSSILHEL 500 (677)
T ss_pred EEEEEchHHHhh
Confidence 999999887765
No 126
>KOG3420|consensus
Probab=99.08 E-value=3e-10 Score=83.03 Aligned_cols=102 Identities=20% Similarity=0.231 Sum_probs=81.1
Q ss_pred cCCCCccCcHHHHHHHHHHHhhhC--CCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCC
Q psy7826 97 IGYGAHMQAPFQQAMVLDDLSEEL--TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEF 174 (213)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~ 174 (213)
+...+....|.+.+.|+..+.... ..|++++|+|||+|-++...+.. ++ ..|+|+|+++++++.+++|+....+
T Consensus 21 ~~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~-~~-e~vlGfDIdpeALEIf~rNaeEfEv-- 96 (185)
T KOG3420|consen 21 LLLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMP-KN-ESVLGFDIDPEALEIFTRNAEEFEV-- 96 (185)
T ss_pred hhhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcC-CC-ceEEeeecCHHHHHHHhhchHHhhh--
Confidence 344566778888888888885422 46889999999999999555543 33 5899999999999999999988763
Q ss_pred ccCCCeEEEEcCCCCCCCCCCCcCEEEEcCcC
Q psy7826 175 VKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSI 206 (213)
Q Consensus 175 ~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~ 206 (213)
++.++++|.....+..+.||.++.|..+
T Consensus 97 ----qidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 97 ----QIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred ----hhheeeeeccchhccCCeEeeEEecCCC
Confidence 6799999998766666789999998754
No 127
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.08 E-value=6e-10 Score=97.43 Aligned_cols=78 Identities=26% Similarity=0.301 Sum_probs=65.9
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC----CCC
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL----DEA 195 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~----~~~ 195 (213)
+.++.+|||+|||+|.++..+++.. .+|+|+|+++.+++.|++|++.++ ..+++++.+|+.+..+ ...
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~-----~~nv~~~~~d~~~~l~~~~~~~~ 361 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNG-----IANVEFLAGTLETVLPKQPWAGQ 361 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhC-----CCceEEEeCCHHHHHHHHHhcCC
Confidence 4567899999999999999999874 589999999999999999999888 5789999999864211 134
Q ss_pred CcCEEEEcCc
Q psy7826 196 PYDIIHVGGS 205 (213)
Q Consensus 196 ~fD~Ii~~~~ 205 (213)
+||+|+++..
T Consensus 362 ~~D~vi~dPP 371 (431)
T TIGR00479 362 IPDVLLLDPP 371 (431)
T ss_pred CCCEEEECcC
Confidence 6999999865
No 128
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.08 E-value=1.6e-09 Score=90.61 Aligned_cols=85 Identities=18% Similarity=0.145 Sum_probs=71.3
Q ss_pred hCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcC
Q psy7826 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYD 198 (213)
Q Consensus 119 ~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD 198 (213)
...++.+|||+|||+|..+..+++.. |..+++++|. +.+++.+++++.+.|+ .++++++.+|+.....+ .+|
T Consensus 146 ~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl----~~rv~~~~~d~~~~~~~--~~D 217 (306)
T TIGR02716 146 KLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGV----ADRMRGIAVDIYKESYP--EAD 217 (306)
T ss_pred CCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCc----cceEEEEecCccCCCCC--CCC
Confidence 35677899999999999999999995 7789999997 7899999999998885 56899999998743222 379
Q ss_pred EEEEcCcCccCCC
Q psy7826 199 IIHVGGSIEDIPE 211 (213)
Q Consensus 199 ~Ii~~~~~~~~p~ 211 (213)
+|++...+++.++
T Consensus 218 ~v~~~~~lh~~~~ 230 (306)
T TIGR02716 218 AVLFCRILYSANE 230 (306)
T ss_pred EEEeEhhhhcCCh
Confidence 9999888887754
No 129
>PHA03412 putative methyltransferase; Provisional
Probab=99.08 E-value=1.6e-09 Score=86.36 Aligned_cols=95 Identities=12% Similarity=0.114 Sum_probs=69.9
Q ss_pred CCCccCcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcC--CCCEEEEEeCChHHHHHHHHHHhhCCCCCcc
Q psy7826 99 YGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVG--KTGKVIGIEHIPQLVQRATHNVISGNPEFVK 176 (213)
Q Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~ 176 (213)
.|++.+.+.+...++. ....+.+|||+|||+|.++..+++.+. +..+|+++|+++.+++.|+++.
T Consensus 30 ~GqFfTP~~iAr~~~i----~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~--------- 96 (241)
T PHA03412 30 LGAFFTPIGLARDFTI----DACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV--------- 96 (241)
T ss_pred CCccCCCHHHHHHHHH----hccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc---------
Confidence 3555555555444321 123467999999999999999998642 2468999999999999999873
Q ss_pred CCCeEEEEcCCCCCCCCCCCcCEEEEcCcCcc
Q psy7826 177 DGRIKFVLGDGRKGYLDEAPYDIIHVGGSIED 208 (213)
Q Consensus 177 ~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~ 208 (213)
.++.++++|+..... ..+||+|++|.....
T Consensus 97 -~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~ 126 (241)
T PHA03412 97 -PEATWINADALTTEF-DTLFDMAISNPPFGK 126 (241)
T ss_pred -cCCEEEEcchhcccc-cCCccEEEECCCCCC
Confidence 457899999875333 358999999976554
No 130
>PRK14968 putative methyltransferase; Provisional
Probab=99.06 E-value=3.8e-09 Score=81.71 Aligned_cols=85 Identities=22% Similarity=0.373 Sum_probs=68.7
Q ss_pred HHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCC--eEEEEcCCC
Q psy7826 111 MVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR--IKFVLGDGR 188 (213)
Q Consensus 111 ~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~--v~~~~~d~~ 188 (213)
.+++.+ ...++.+|||+|||+|..+..+++. + .+++++|+++.+++.+++++..+++ .+ +.++++|..
T Consensus 14 ~l~~~~--~~~~~~~vLd~G~G~G~~~~~l~~~-~--~~v~~~D~s~~~~~~a~~~~~~~~~-----~~~~~~~~~~d~~ 83 (188)
T PRK14968 14 LLAENA--VDKKGDRVLEVGTGSGIVAIVAAKN-G--KKVVGVDINPYAVECAKCNAKLNNI-----RNNGVEVIRSDLF 83 (188)
T ss_pred HHHHhh--hccCCCEEEEEccccCHHHHHHHhh-c--ceEEEEECCHHHHHHHHHHHHHcCC-----CCcceEEEecccc
Confidence 344444 2467789999999999999999987 3 6999999999999999999988773 33 889999987
Q ss_pred CCCCCCCCcCEEEEcCcC
Q psy7826 189 KGYLDEAPYDIIHVGGSI 206 (213)
Q Consensus 189 ~~~~~~~~fD~Ii~~~~~ 206 (213)
....+ .+||+|+++...
T Consensus 84 ~~~~~-~~~d~vi~n~p~ 100 (188)
T PRK14968 84 EPFRG-DKFDVILFNPPY 100 (188)
T ss_pred ccccc-cCceEEEECCCc
Confidence 65544 379999998654
No 131
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=99.05 E-value=9.5e-10 Score=90.99 Aligned_cols=93 Identities=19% Similarity=0.217 Sum_probs=75.4
Q ss_pred HHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCC
Q psy7826 108 QQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDG 187 (213)
Q Consensus 108 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~ 187 (213)
+...+++.+ .+.++..++|++||.|+.|..+++.+++.++|+|+|.++.+++.+++++.. . .+++++++|.
T Consensus 7 ll~Evl~~L--~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~------~ri~~i~~~f 77 (296)
T PRK00050 7 LLDEVVDAL--AIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-F------GRFTLVHGNF 77 (296)
T ss_pred cHHHHHHhh--CCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-C------CcEEEEeCCH
Confidence 446677777 467888999999999999999999976578999999999999999988755 2 4899999998
Q ss_pred CCC---CCC-CCCcCEEEEcCcCccC
Q psy7826 188 RKG---YLD-EAPYDIIHVGGSIEDI 209 (213)
Q Consensus 188 ~~~---~~~-~~~fD~Ii~~~~~~~~ 209 (213)
.+. ... ..++|.|++|..+..+
T Consensus 78 ~~l~~~l~~~~~~vDgIl~DLGvSs~ 103 (296)
T PRK00050 78 SNLKEVLAEGLGKVDGILLDLGVSSP 103 (296)
T ss_pred HHHHHHHHcCCCccCEEEECCCcccc
Confidence 732 111 1279999999987654
No 132
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.05 E-value=1.2e-09 Score=93.88 Aligned_cols=97 Identities=15% Similarity=0.055 Sum_probs=73.2
Q ss_pred CccCcHHHHHHHHHHHhhh--CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCC
Q psy7826 101 AHMQAPFQQAMVLDDLSEE--LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 178 (213)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~~--~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~ 178 (213)
++.+.+...+.+...+... ..++.+|||+|||+|.++..++.. + .+|+|+|+++.+++.|++|++.++ ..
T Consensus 210 F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~-~--~~v~~vE~~~~av~~a~~N~~~~~-----~~ 281 (374)
T TIGR02085 210 FFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP-D--TQLTGIEIESEAIACAQQSAQMLG-----LD 281 (374)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc-C--CeEEEEECCHHHHHHHHHHHHHcC-----CC
Confidence 4455555555554443321 235679999999999999999965 2 589999999999999999999988 46
Q ss_pred CeEEEEcCCCCCCC-CCCCcCEEEEcCc
Q psy7826 179 RIKFVLGDGRKGYL-DEAPYDIIHVGGS 205 (213)
Q Consensus 179 ~v~~~~~d~~~~~~-~~~~fD~Ii~~~~ 205 (213)
+++++.+|+..... ...+||+|++|..
T Consensus 282 ~~~~~~~d~~~~~~~~~~~~D~vi~DPP 309 (374)
T TIGR02085 282 NLSFAALDSAKFATAQMSAPELVLVNPP 309 (374)
T ss_pred cEEEEECCHHHHHHhcCCCCCEEEECCC
Confidence 89999999864222 1236999999954
No 133
>PRK04457 spermidine synthase; Provisional
Probab=99.04 E-value=1.9e-09 Score=88.32 Aligned_cols=80 Identities=20% Similarity=0.291 Sum_probs=65.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCC-CCCcC
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLD-EAPYD 198 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~-~~~fD 198 (213)
..++.+|||+|||.|.++..+++.. +..+++++|+++.+++.|++++...+. .++++++.+|+.+.... ..+||
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~----~~rv~v~~~Da~~~l~~~~~~yD 138 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPEN----GERFEVIEADGAEYIAVHRHSTD 138 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCC----CCceEEEECCHHHHHHhCCCCCC
Confidence 3456789999999999999999986 778999999999999999999865431 36899999998642221 24799
Q ss_pred EEEEcC
Q psy7826 199 IIHVGG 204 (213)
Q Consensus 199 ~Ii~~~ 204 (213)
+|+++.
T Consensus 139 ~I~~D~ 144 (262)
T PRK04457 139 VILVDG 144 (262)
T ss_pred EEEEeC
Confidence 999985
No 134
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.04 E-value=1.2e-09 Score=89.50 Aligned_cols=90 Identities=16% Similarity=0.184 Sum_probs=64.4
Q ss_pred CCCEEEEEcCCccH----HHHHHHHHcCC----CCEEEEEeCChHHHHHHHHHHhh----CCCC---------------C
Q psy7826 122 EGKKVLDIGSGNGY----FTALLAWCVGK----TGKVIGIEHIPQLVQRATHNVIS----GNPE---------------F 174 (213)
Q Consensus 122 ~~~~vLDiG~G~G~----~t~~la~~~~~----~~~v~gvD~s~~~l~~a~~~~~~----~gl~---------------~ 174 (213)
++.+|||+|||+|- ++..+++..+. +.+|+|+|+|+.+++.|++..-. .++. .
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45699999999995 55566665421 46899999999999999986310 0000 0
Q ss_pred c---cCCCeEEEEcCCCCCCCCCCCcCEEEEcCcCccCCC
Q psy7826 175 V---KDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211 (213)
Q Consensus 175 ~---~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~p~ 211 (213)
+ -..+|.|.++|+....++.++||+|++..++.++++
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~ 218 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDE 218 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCH
Confidence 0 013689999999865544568999999988888864
No 135
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.04 E-value=1.1e-09 Score=96.89 Aligned_cols=90 Identities=26% Similarity=0.355 Sum_probs=69.6
Q ss_pred HHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCC
Q psy7826 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 189 (213)
Q Consensus 110 ~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~ 189 (213)
..++..+ ...++.+|||+|||+|..+..+++.. .+|+|+|+++.+++.+++.... .++++++++|+..
T Consensus 27 ~~il~~l--~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~~-------~~~i~~~~~d~~~ 94 (475)
T PLN02336 27 PEILSLL--PPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESINGH-------YKNVKFMCADVTS 94 (475)
T ss_pred hHHHhhc--CccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhcc-------CCceEEEEecccc
Confidence 3455555 24567799999999999999999874 5899999999999887653221 3579999999862
Q ss_pred --CCCCCCCcCEEEEcCcCccCCC
Q psy7826 190 --GYLDEAPYDIIHVGGSIEDIPE 211 (213)
Q Consensus 190 --~~~~~~~fD~Ii~~~~~~~~p~ 211 (213)
...+.++||+|+++.+++++++
T Consensus 95 ~~~~~~~~~fD~I~~~~~l~~l~~ 118 (475)
T PLN02336 95 PDLNISDGSVDLIFSNWLLMYLSD 118 (475)
T ss_pred cccCCCCCCEEEEehhhhHHhCCH
Confidence 1223468999999999999875
No 136
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.01 E-value=3.6e-09 Score=86.22 Aligned_cols=90 Identities=23% Similarity=0.240 Sum_probs=71.6
Q ss_pred ccCcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeE
Q psy7826 102 HMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIK 181 (213)
Q Consensus 102 ~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~ 181 (213)
++..+.+...+++.+ ...++.+|||+|||+|.+|..+++.. .+++++|+++.+++.+++++.. ..+++
T Consensus 11 fl~d~~i~~~i~~~~--~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~-------~~~v~ 78 (253)
T TIGR00755 11 FLIDESVIQKIVEAA--NVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL-------YERLE 78 (253)
T ss_pred cCCCHHHHHHHHHhc--CCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc-------CCcEE
Confidence 356667777788777 46778899999999999999999984 4699999999999999988754 35899
Q ss_pred EEEcCCCCCCCCCCCcC---EEEEcCc
Q psy7826 182 FVLGDGRKGYLDEAPYD---IIHVGGS 205 (213)
Q Consensus 182 ~~~~d~~~~~~~~~~fD---~Ii~~~~ 205 (213)
++.+|+...... .|| .|++|..
T Consensus 79 v~~~D~~~~~~~--~~d~~~~vvsNlP 103 (253)
T TIGR00755 79 VIEGDALKVDLP--DFPKQLKVVSNLP 103 (253)
T ss_pred EEECchhcCChh--HcCCcceEEEcCC
Confidence 999999754332 466 7777754
No 137
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.00 E-value=2.1e-09 Score=92.72 Aligned_cols=79 Identities=23% Similarity=0.238 Sum_probs=64.2
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccC-CCeEEEEcCCCCCCC----CCC
Q psy7826 121 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKD-GRIKFVLGDGRKGYL----DEA 195 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~-~~v~~~~~d~~~~~~----~~~ 195 (213)
.++.+|||+|||+|+++...+.. ...+|+++|+|+.+++.+++|++.+++ . .+++++++|+.+... ...
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl----~~~~v~~i~~D~~~~l~~~~~~~~ 292 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKL----DLSKAEFVRDDVFKLLRTYRDRGE 292 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCC----CCCcEEEEEccHHHHHHHHHhcCC
Confidence 46789999999999998876643 345999999999999999999999884 2 379999999875321 235
Q ss_pred CcCEEEEcCc
Q psy7826 196 PYDIIHVGGS 205 (213)
Q Consensus 196 ~fD~Ii~~~~ 205 (213)
+||+|++|..
T Consensus 293 ~fDlVilDPP 302 (396)
T PRK15128 293 KFDVIVMDPP 302 (396)
T ss_pred CCCEEEECCC
Confidence 7999999964
No 138
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.99 E-value=5e-09 Score=87.49 Aligned_cols=89 Identities=15% Similarity=0.185 Sum_probs=64.0
Q ss_pred hCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC--CCC--
Q psy7826 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY--LDE-- 194 (213)
Q Consensus 119 ~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~--~~~-- 194 (213)
.+.++.+|||+|||+|.++..+++.+....+++++|+|++|++.+++++.+... .-++.++++|..+.. +..
T Consensus 60 ~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p----~~~v~~i~gD~~~~~~~~~~~~ 135 (301)
T TIGR03438 60 ATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP----QLEVHGICADFTQPLALPPEPA 135 (301)
T ss_pred hhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC----CceEEEEEEcccchhhhhcccc
Confidence 345678999999999999999999863246899999999999999998765321 235778899987532 221
Q ss_pred -CCcCEEEEcCcCccCCC
Q psy7826 195 -APYDIIHVGGSIEDIPE 211 (213)
Q Consensus 195 -~~fD~Ii~~~~~~~~p~ 211 (213)
....+++++.++.++++
T Consensus 136 ~~~~~~~~~gs~~~~~~~ 153 (301)
T TIGR03438 136 AGRRLGFFPGSTIGNFTP 153 (301)
T ss_pred cCCeEEEEecccccCCCH
Confidence 12335555666776653
No 139
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.99 E-value=2.5e-09 Score=91.49 Aligned_cols=97 Identities=16% Similarity=0.145 Sum_probs=72.2
Q ss_pred CccCcHHHHHHHHHHHhhhCC-CCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCC
Q psy7826 101 AHMQAPFQQAMVLDDLSEELT-EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR 179 (213)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~~~~-~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~ 179 (213)
++...+.....+.+.+..... .+.+|||++||+|.++..+++.. .+|+|+|+++.+++.+++|++.++ ..+
T Consensus 184 F~Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~-----~~~ 255 (362)
T PRK05031 184 FTQPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANG-----IDN 255 (362)
T ss_pred eeccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhC-----CCc
Confidence 444455554555554433232 23579999999999999999874 589999999999999999999988 568
Q ss_pred eEEEEcCCCCCCCC----------------CCCcCEEEEcCc
Q psy7826 180 IKFVLGDGRKGYLD----------------EAPYDIIHVGGS 205 (213)
Q Consensus 180 v~~~~~d~~~~~~~----------------~~~fD~Ii~~~~ 205 (213)
++++.+|+...... ..+||+|++|..
T Consensus 256 v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPP 297 (362)
T PRK05031 256 VQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPP 297 (362)
T ss_pred EEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCC
Confidence 99999998642110 125899999865
No 140
>KOG1541|consensus
Probab=98.97 E-value=2.2e-09 Score=83.90 Aligned_cols=92 Identities=21% Similarity=0.319 Sum_probs=69.0
Q ss_pred cCcHHHHHHHHHHHhhhCCC--CCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCe
Q psy7826 103 MQAPFQQAMVLDDLSEELTE--GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRI 180 (213)
Q Consensus 103 ~~~~~~~~~~~~~l~~~~~~--~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v 180 (213)
..+.++....+++++ ++. ..-|||||||+|..+..+... | ...+|+|+|+.|++.|.+..-. -
T Consensus 31 ~IQ~em~eRaLELLa--lp~~~~~~iLDIGCGsGLSg~vL~~~-G--h~wiGvDiSpsML~~a~~~e~e----------g 95 (270)
T KOG1541|consen 31 LIQAEMAERALELLA--LPGPKSGLILDIGCGSGLSGSVLSDS-G--HQWIGVDISPSMLEQAVERELE----------G 95 (270)
T ss_pred eehHHHHHHHHHHhh--CCCCCCcEEEEeccCCCcchheeccC-C--ceEEeecCCHHHHHHHHHhhhh----------c
Confidence 445667777888884 444 567999999999999887764 3 5899999999999999974211 2
Q ss_pred EEEEcCCCCCCC-CCCCcCEEEEcCcCccC
Q psy7826 181 KFVLGDGRKGYL-DEAPYDIIHVGGSIEDI 209 (213)
Q Consensus 181 ~~~~~d~~~~~~-~~~~fD~Ii~~~~~~~~ 209 (213)
.++.+|.-++.+ ..++||.+|+..++.++
T Consensus 96 dlil~DMG~GlpfrpGtFDg~ISISAvQWL 125 (270)
T KOG1541|consen 96 DLILCDMGEGLPFRPGTFDGVISISAVQWL 125 (270)
T ss_pred CeeeeecCCCCCCCCCccceEEEeeeeeee
Confidence 577788765433 34689999999887654
No 141
>KOG1271|consensus
Probab=98.97 E-value=3.8e-09 Score=80.25 Aligned_cols=79 Identities=24% Similarity=0.327 Sum_probs=65.9
Q ss_pred CEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEEEc
Q psy7826 124 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVG 203 (213)
Q Consensus 124 ~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 203 (213)
.+|||+|||.|.+...|++. +-.++++|+|.|+.++++|+..+++.+. .+.|+|.+.|+..+....++||+|+--
T Consensus 69 ~~VlDLGtGNG~~L~~L~~e-gf~~~L~GvDYs~~AV~LA~niAe~~~~----~n~I~f~q~DI~~~~~~~~qfdlvlDK 143 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKE-GFQSKLTGVDYSEKAVELAQNIAERDGF----SNEIRFQQLDITDPDFLSGQFDLVLDK 143 (227)
T ss_pred cceeeccCCchHHHHHHHHh-cCCCCccccccCHHHHHHHHHHHHhcCC----CcceeEEEeeccCCcccccceeEEeec
Confidence 48999999999999999988 6667899999999999999999999884 233999999998754445689998866
Q ss_pred CcCc
Q psy7826 204 GSIE 207 (213)
Q Consensus 204 ~~~~ 207 (213)
+++.
T Consensus 144 GT~D 147 (227)
T KOG1271|consen 144 GTLD 147 (227)
T ss_pred Ccee
Confidence 6544
No 142
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.96 E-value=6.3e-09 Score=82.90 Aligned_cols=86 Identities=23% Similarity=0.193 Sum_probs=65.4
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCC----------CccCCCeEEEEcCCCC
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPE----------FVKDGRIKFVLGDGRK 189 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~----------~~~~~~v~~~~~d~~~ 189 (213)
..++.+|||+|||.|..+.+||++ | .+|+|+|+|+.+++.+.+. .++. .....+|++.++|+..
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~-G--~~V~avD~s~~Ai~~~~~~---~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~ 108 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQ-G--HEVLGVELSELAVEQFFAE---NGLTPQTRQSGEFEHYQAGEITIYCGDFFA 108 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhC-C--CeEEEEccCHHHHHHHHHH---cCCCccccccccccccccCceEEEECcccC
Confidence 456789999999999999999986 5 6899999999999987432 1110 0013578999999985
Q ss_pred CCCC-CCCcCEEEEcCcCccCCC
Q psy7826 190 GYLD-EAPYDIIHVGGSIEDIPE 211 (213)
Q Consensus 190 ~~~~-~~~fD~Ii~~~~~~~~p~ 211 (213)
..+. ...||.|+-.++++++|+
T Consensus 109 l~~~~~~~fd~v~D~~~~~~l~~ 131 (218)
T PRK13255 109 LTAADLADVDAVYDRAALIALPE 131 (218)
T ss_pred CCcccCCCeeEEEehHhHhhCCH
Confidence 4332 247999999988888875
No 143
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.95 E-value=4.8e-09 Score=89.43 Aligned_cols=95 Identities=18% Similarity=0.149 Sum_probs=69.7
Q ss_pred cCcHHHHHHHHHHHhhhCC-CCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeE
Q psy7826 103 MQAPFQQAMVLDDLSEELT-EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIK 181 (213)
Q Consensus 103 ~~~~~~~~~~~~~l~~~~~-~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~ 181 (213)
...+.....+++.+..... .+.+|||+|||+|.++..+++.. .+|+|+|+++.+++.+++|++.++ ..+++
T Consensus 177 Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~-----~~~v~ 248 (353)
T TIGR02143 177 QPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANN-----IDNVQ 248 (353)
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcC-----CCcEE
Confidence 3444444444444332222 23479999999999999999875 489999999999999999999988 56899
Q ss_pred EEEcCCCCCCCC----------------CCCcCEEEEcCc
Q psy7826 182 FVLGDGRKGYLD----------------EAPYDIIHVGGS 205 (213)
Q Consensus 182 ~~~~d~~~~~~~----------------~~~fD~Ii~~~~ 205 (213)
++.+|+...... ...||+|++|..
T Consensus 249 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP 288 (353)
T TIGR02143 249 IIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPP 288 (353)
T ss_pred EEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCC
Confidence 999998642211 013899999864
No 144
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.94 E-value=7.7e-09 Score=79.98 Aligned_cols=96 Identities=24% Similarity=0.223 Sum_probs=69.1
Q ss_pred CcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCE---------EEEEeCChHHHHHHHHHHhhCCCCC
Q psy7826 104 QAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGK---------VIGIEHIPQLVQRATHNVISGNPEF 174 (213)
Q Consensus 104 ~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~---------v~gvD~s~~~l~~a~~~~~~~gl~~ 174 (213)
..|.+.+.++.+. ..+++..|||-.||+|.+....+... .... ++|.|+++.+++.+++|++..|+
T Consensus 12 L~~~lA~~ll~la--~~~~~~~vlDP~CGsGtiliEaa~~~-~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~-- 86 (179)
T PF01170_consen 12 LRPTLAAALLNLA--GWRPGDVVLDPFCGSGTILIEAALMG-ANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV-- 86 (179)
T ss_dssp S-HHHHHHHHHHT--T--TTS-EEETT-TTSHHHHHHHHHH-TTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT---
T ss_pred CCHHHHHHHHHHh--CCCCCCEEeecCCCCCHHHHHHHHHh-hCcccccccccccEEecCCCHHHHHHHHHHHHhccc--
Confidence 4455656666665 57888999999999999998887764 3334 89999999999999999999985
Q ss_pred ccCCCeEEEEcCCCCCCCCCCCcCEEEEcCcC
Q psy7826 175 VKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSI 206 (213)
Q Consensus 175 ~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~ 206 (213)
...+.+.+.|+.......+++|.|++|...
T Consensus 87 --~~~i~~~~~D~~~l~~~~~~~d~IvtnPPy 116 (179)
T PF01170_consen 87 --EDYIDFIQWDARELPLPDGSVDAIVTNPPY 116 (179)
T ss_dssp --CGGEEEEE--GGGGGGTTSBSCEEEEE--S
T ss_pred --CCceEEEecchhhcccccCCCCEEEECcch
Confidence 457999999998644344689999999754
No 145
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.94 E-value=1.6e-09 Score=81.97 Aligned_cols=77 Identities=25% Similarity=0.255 Sum_probs=56.9
Q ss_pred CEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCC---CCCcCEE
Q psy7826 124 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLD---EAPYDII 200 (213)
Q Consensus 124 ~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~---~~~fD~I 200 (213)
..|+|++||.|+-+..+|+.+ .+|+++|+++.+++.++.|++-+|. .++|.++++|..+.... ...||+|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv----~~~I~~i~gD~~~~~~~~~~~~~~D~v 73 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGV----ADNIDFICGDFFELLKRLKSNKIFDVV 73 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-----GGGEEEEES-HHHHGGGB------SEE
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEeCCHHHHHhhccccccccEE
Confidence 369999999999999999985 5899999999999999999999996 67899999998743222 1128999
Q ss_pred EEcCcCc
Q psy7826 201 HVGGSIE 207 (213)
Q Consensus 201 i~~~~~~ 207 (213)
+++..+.
T Consensus 74 FlSPPWG 80 (163)
T PF09445_consen 74 FLSPPWG 80 (163)
T ss_dssp EE---BS
T ss_pred EECCCCC
Confidence 9986543
No 146
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.94 E-value=4e-09 Score=79.26 Aligned_cols=74 Identities=32% Similarity=0.579 Sum_probs=56.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCE
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDI 199 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~ 199 (213)
..++.+|||+|||+|..+..+++. + .+++|+|+++.+++. . ++.....+......+.++||+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~-~--~~~~g~D~~~~~~~~------~---------~~~~~~~~~~~~~~~~~~fD~ 81 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR-G--FEVTGVDISPQMIEK------R---------NVVFDNFDAQDPPFPDGSFDL 81 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT-T--SEEEEEESSHHHHHH------T---------TSEEEEEECHTHHCHSSSEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh-C--CEEEEEECCHHHHhh------h---------hhhhhhhhhhhhhccccchhh
Confidence 567889999999999999999776 4 499999999999988 1 122222222222233468999
Q ss_pred EEEcCcCccCCC
Q psy7826 200 IHVGGSIEDIPE 211 (213)
Q Consensus 200 Ii~~~~~~~~p~ 211 (213)
|++..+++|+++
T Consensus 82 i~~~~~l~~~~d 93 (161)
T PF13489_consen 82 IICNDVLEHLPD 93 (161)
T ss_dssp EEEESSGGGSSH
T ss_pred HhhHHHHhhccc
Confidence 999999999985
No 147
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.93 E-value=4.1e-09 Score=82.01 Aligned_cols=72 Identities=22% Similarity=0.384 Sum_probs=56.0
Q ss_pred hCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC-------
Q psy7826 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY------- 191 (213)
Q Consensus 119 ~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~------- 191 (213)
.+.++.+|||+|||+|.++..+++...+.++|+++|+++.+ . .++++++++|..+..
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~-----~~~i~~~~~d~~~~~~~~~l~~ 92 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------P-----IENVDFIRGDFTDEEVLNKIRE 92 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------c-----CCCceEEEeeCCChhHHHHHHH
Confidence 35788999999999999999999886556789999999854 1 346788888886421
Q ss_pred -CCCCCcCEEEEcCcC
Q psy7826 192 -LDEAPYDIIHVGGSI 206 (213)
Q Consensus 192 -~~~~~fD~Ii~~~~~ 206 (213)
.+..+||+|++++++
T Consensus 93 ~~~~~~~D~V~~~~~~ 108 (188)
T TIGR00438 93 RVGDDKVDVVMSDAAP 108 (188)
T ss_pred HhCCCCccEEEcCCCC
Confidence 123479999998753
No 148
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.93 E-value=9.4e-09 Score=82.52 Aligned_cols=83 Identities=22% Similarity=0.384 Sum_probs=67.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC-CCCCCcC
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-LDEAPYD 198 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~-~~~~~fD 198 (213)
..++.+|||+|||+|..+..+++. + .+++++|+++.+++.+++++...+ . ++.+..+|..... ...++||
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~-~--~~v~~iD~s~~~~~~a~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~fD 116 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARL-G--ADVTGIDASEENIEVARLHALESG-----L-KIDYRQTTAEELAAEHPGQFD 116 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc-C--CeEEEEcCCHHHHHHHHHHHHHcC-----C-ceEEEecCHHHhhhhcCCCcc
Confidence 456789999999999999988876 3 589999999999999999987765 2 5788888876432 1235899
Q ss_pred EEEEcCcCccCCC
Q psy7826 199 IIHVGGSIEDIPE 211 (213)
Q Consensus 199 ~Ii~~~~~~~~p~ 211 (213)
+|++...++++++
T Consensus 117 ~Ii~~~~l~~~~~ 129 (233)
T PRK05134 117 VVTCMEMLEHVPD 129 (233)
T ss_pred EEEEhhHhhccCC
Confidence 9999988888765
No 149
>PRK00811 spermidine synthase; Provisional
Probab=98.92 E-value=7.3e-09 Score=85.77 Aligned_cols=87 Identities=24% Similarity=0.241 Sum_probs=66.1
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC-CCCCcCE
Q psy7826 121 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-DEAPYDI 199 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~-~~~~fD~ 199 (213)
....+||++|||.|..+..+++.. +..+|+++|+++.+++.|++.+...+-...+.++++++.+|+..... ..++||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 345799999999999999998863 44699999999999999999886532111124689999999874222 2358999
Q ss_pred EEEcCcCcc
Q psy7826 200 IHVGGSIED 208 (213)
Q Consensus 200 Ii~~~~~~~ 208 (213)
|+++...+.
T Consensus 154 Ii~D~~dp~ 162 (283)
T PRK00811 154 IIVDSTDPV 162 (283)
T ss_pred EEECCCCCC
Confidence 999975443
No 150
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.91 E-value=5e-09 Score=83.47 Aligned_cols=82 Identities=22% Similarity=0.345 Sum_probs=66.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCC-CCCcCEE
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLD-EAPYDII 200 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~-~~~fD~I 200 (213)
.+.+|||+|||+|..+..+++. + .+++++|+++.+++.+++++...+ ..++.+..+|+...... .++||+|
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-~--~~v~~iD~s~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~D~i 116 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-G--ANVTGIDASEENIEVAKLHAKKDP-----LLKIEYRCTSVEDLAEKGAKSFDVV 116 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-C--CeEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEeCCHHHhhcCCCCCccEE
Confidence 4679999999999999988876 3 479999999999999999988766 33688998887643222 3589999
Q ss_pred EEcCcCccCCC
Q psy7826 201 HVGGSIEDIPE 211 (213)
Q Consensus 201 i~~~~~~~~p~ 211 (213)
+++..++++++
T Consensus 117 ~~~~~l~~~~~ 127 (224)
T TIGR01983 117 TCMEVLEHVPD 127 (224)
T ss_pred EehhHHHhCCC
Confidence 99988887764
No 151
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.91 E-value=2.2e-08 Score=78.11 Aligned_cols=90 Identities=13% Similarity=0.106 Sum_probs=68.2
Q ss_pred HHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCC
Q psy7826 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 189 (213)
Q Consensus 110 ~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~ 189 (213)
..+...+. ....+.+|||++||+|.++..++.+ |. .+|+++|.++.+++.+++|++.+++ ..+++++.+|+..
T Consensus 38 ea~f~~l~-~~~~g~~vLDLfaGsG~lglea~sr-ga-~~v~~vE~~~~a~~~~~~N~~~~~~----~~~~~~~~~D~~~ 110 (189)
T TIGR00095 38 ELFFNILR-PEIQGAHLLDVFAGSGLLGEEALSR-GA-KVAFLEEDDRKANQTLKENLALLKS----GEQAEVVRNSALR 110 (189)
T ss_pred HHHHHHHH-HhcCCCEEEEecCCCcHHHHHHHhC-CC-CEEEEEeCCHHHHHHHHHHHHHhCC----cccEEEEehhHHH
Confidence 33444443 2235789999999999999999988 54 4899999999999999999999884 3478999999953
Q ss_pred C---CCC-CCCcCEEEEcCcC
Q psy7826 190 G---YLD-EAPYDIIHVGGSI 206 (213)
Q Consensus 190 ~---~~~-~~~fD~Ii~~~~~ 206 (213)
. ... ...||+|+.+...
T Consensus 111 ~l~~~~~~~~~~dvv~~DPPy 131 (189)
T TIGR00095 111 ALKFLAKKPTFDNVIYLDPPF 131 (189)
T ss_pred HHHHhhccCCCceEEEECcCC
Confidence 2 111 2247888888654
No 152
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.91 E-value=4e-09 Score=97.30 Aligned_cols=79 Identities=14% Similarity=0.178 Sum_probs=65.2
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccC-CCeEEEEcCCCCCCC-CCCCcC
Q psy7826 121 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKD-GRIKFVLGDGRKGYL-DEAPYD 198 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~-~~v~~~~~d~~~~~~-~~~~fD 198 (213)
.++.+|||+|||+|+++.+++.. |. .+|+++|+|+.+++.+++|++.+|+ . .+++++++|+.+... ...+||
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~-Ga-~~V~~vD~s~~al~~a~~N~~~ng~----~~~~v~~i~~D~~~~l~~~~~~fD 610 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG-GA-KSTTTVDMSNTYLEWAERNFALNGL----SGRQHRLIQADCLAWLKEAREQFD 610 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC-CC-CEEEEEeCCHHHHHHHHHHHHHhCC----CccceEEEEccHHHHHHHcCCCcC
Confidence 35789999999999999999985 43 4799999999999999999999884 2 479999999864221 135799
Q ss_pred EEEEcCc
Q psy7826 199 IIHVGGS 205 (213)
Q Consensus 199 ~Ii~~~~ 205 (213)
+|++|..
T Consensus 611 lIilDPP 617 (702)
T PRK11783 611 LIFIDPP 617 (702)
T ss_pred EEEECCC
Confidence 9999953
No 153
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.91 E-value=7.7e-09 Score=81.09 Aligned_cols=81 Identities=26% Similarity=0.368 Sum_probs=60.1
Q ss_pred hCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcC
Q psy7826 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYD 198 (213)
Q Consensus 119 ~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD 198 (213)
...++++|+|+.||-|+++..+|+. ++...|+++|+++++++..++|++.+++ ..++....+|...... ...||
T Consensus 98 ~v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~lNkv----~~~i~~~~~D~~~~~~-~~~~d 171 (200)
T PF02475_consen 98 LVKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLKENIRLNKV----ENRIEVINGDAREFLP-EGKFD 171 (200)
T ss_dssp C--TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHHHHHHHTT-----TTTEEEEES-GGG----TT-EE
T ss_pred cCCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHHHHHHHcCC----CCeEEEEcCCHHHhcC-ccccC
Confidence 3578999999999999999999986 3456899999999999999999999996 5679999999986444 56899
Q ss_pred EEEEcCc
Q psy7826 199 IIHVGGS 205 (213)
Q Consensus 199 ~Ii~~~~ 205 (213)
.|+++..
T Consensus 172 rvim~lp 178 (200)
T PF02475_consen 172 RVIMNLP 178 (200)
T ss_dssp EEEE--T
T ss_pred EEEECCh
Confidence 9999864
No 154
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.90 E-value=1.2e-08 Score=85.54 Aligned_cols=81 Identities=22% Similarity=0.335 Sum_probs=63.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhC-CCCCccCCCeEEEE-cCCC---CCC-CCCC
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISG-NPEFVKDGRIKFVL-GDGR---KGY-LDEA 195 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-gl~~~~~~~v~~~~-~d~~---~~~-~~~~ 195 (213)
++.++||+|||+|.....++... +..+++|+|+++.+++.|++|++.+ ++ ..+|+++. .|.. ... ...+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l----~~~I~~~~~~~~~~i~~~i~~~~~ 188 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGL----NGAIRLRLQKDSKAIFKGIIHKNE 188 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCC----cCcEEEEEccchhhhhhcccccCC
Confidence 45789999999999988888774 5579999999999999999999998 65 45788864 3332 211 1245
Q ss_pred CcCEEEEcCcCc
Q psy7826 196 PYDIIHVGGSIE 207 (213)
Q Consensus 196 ~fD~Ii~~~~~~ 207 (213)
.||+|++|....
T Consensus 189 ~fDlivcNPPf~ 200 (321)
T PRK11727 189 RFDATLCNPPFH 200 (321)
T ss_pred ceEEEEeCCCCc
Confidence 799999997654
No 155
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=7.6e-09 Score=89.98 Aligned_cols=98 Identities=28% Similarity=0.334 Sum_probs=75.8
Q ss_pred CCccCcHHHHHHHHHHHhh--hCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccC
Q psy7826 100 GAHMQAPFQQAMVLDDLSE--ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKD 177 (213)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~--~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~ 177 (213)
.++...+.....+.+.... ...++++|||+-||.|.++..+|+.. .+|+|+|+++++++.|++|++.++ .
T Consensus 269 sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~-----i 340 (432)
T COG2265 269 SFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANG-----I 340 (432)
T ss_pred CceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcC-----C
Confidence 3444555554444444432 34577899999999999999999765 699999999999999999999999 5
Q ss_pred CCeEEEEcCCCCCCCC---CCCcCEEEEcCc
Q psy7826 178 GRIKFVLGDGRKGYLD---EAPYDIIHVGGS 205 (213)
Q Consensus 178 ~~v~~~~~d~~~~~~~---~~~fD~Ii~~~~ 205 (213)
.|++|..+++...... ...+|.|++|..
T Consensus 341 ~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPP 371 (432)
T COG2265 341 DNVEFIAGDAEEFTPAWWEGYKPDVVVVDPP 371 (432)
T ss_pred CcEEEEeCCHHHHhhhccccCCCCEEEECCC
Confidence 7799999999843322 246899999854
No 156
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.88 E-value=4.3e-08 Score=80.57 Aligned_cols=86 Identities=22% Similarity=0.253 Sum_probs=59.0
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEE
Q psy7826 121 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 200 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~I 200 (213)
-.|.+|||||||.||++..++.. |+ ..|+|+|.+.......+-.-.-.|. ...+..+..-++. .+..+.||+|
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~-GA-~~ViGiDP~~lf~~QF~~i~~~lg~----~~~~~~lplgvE~-Lp~~~~FDtV 186 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGR-GA-KSVIGIDPSPLFYLQFEAIKHFLGQ----DPPVFELPLGVED-LPNLGAFDTV 186 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhc-CC-CEEEEECCChHHHHHHHHHHHHhCC----CccEEEcCcchhh-ccccCCcCEE
Confidence 46889999999999999999987 65 4899999998877654432222221 1123333222222 3335689999
Q ss_pred EEcCcCccCCCCC
Q psy7826 201 HVGGSIEDIPEGI 213 (213)
Q Consensus 201 i~~~~~~~~p~~l 213 (213)
++-+++-|..+|+
T Consensus 187 F~MGVLYHrr~Pl 199 (315)
T PF08003_consen 187 FSMGVLYHRRSPL 199 (315)
T ss_pred EEeeehhccCCHH
Confidence 9999999887763
No 157
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.87 E-value=2e-08 Score=80.09 Aligned_cols=103 Identities=18% Similarity=0.121 Sum_probs=72.5
Q ss_pred CcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHh------h-CCCCCcc
Q psy7826 104 QAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVI------S-GNPEFVK 176 (213)
Q Consensus 104 ~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~------~-~gl~~~~ 176 (213)
+.|........ + ...++.+||+.|||.|.-..+||++ | .+|+|+|+|+.+++.+.+... . .......
T Consensus 28 pnp~L~~~~~~-l--~~~~~~rvLvPgCGkg~D~~~LA~~-G--~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~ 101 (226)
T PRK13256 28 PNEFLVKHFSK-L--NINDSSVCLIPMCGCSIDMLFFLSK-G--VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYK 101 (226)
T ss_pred CCHHHHHHHHh-c--CCCCCCeEEEeCCCChHHHHHHHhC-C--CcEEEEecCHHHHHHHHHHcCCCcceecccccceec
Confidence 44444444333 2 2446789999999999999999997 5 589999999999999866310 0 0000001
Q ss_pred CCCeEEEEcCCCCCCC---CCCCcCEEEEcCcCccCCCC
Q psy7826 177 DGRIKFVLGDGRKGYL---DEAPYDIIHVGGSIEDIPEG 212 (213)
Q Consensus 177 ~~~v~~~~~d~~~~~~---~~~~fD~Ii~~~~~~~~p~~ 212 (213)
..++++.++|+.+..+ ..++||.|+-.+++..+|+.
T Consensus 102 ~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~ 140 (226)
T PRK13256 102 GDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPND 140 (226)
T ss_pred cCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHH
Confidence 3479999999986432 12579999999999999864
No 158
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.81 E-value=3.1e-08 Score=67.79 Aligned_cols=77 Identities=21% Similarity=0.340 Sum_probs=61.4
Q ss_pred EEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC-CCCCcCEEEEc
Q psy7826 125 KVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-DEAPYDIIHVG 203 (213)
Q Consensus 125 ~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~-~~~~fD~Ii~~ 203 (213)
+++|+|||+|..+..+++. +..+++++|+++..+..+++.....+ ..++.+..+|...... ...+||+|+++
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~d~i~~~ 73 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALL-----ADNVEVLKGDAEELPPEADESFDVIISD 73 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhccc-----ccceEEEEcChhhhccccCCceEEEEEc
Confidence 4899999999999998872 44699999999999999986544433 4678999999875432 34579999999
Q ss_pred CcCcc
Q psy7826 204 GSIED 208 (213)
Q Consensus 204 ~~~~~ 208 (213)
..+++
T Consensus 74 ~~~~~ 78 (107)
T cd02440 74 PPLHH 78 (107)
T ss_pred cceee
Confidence 98765
No 159
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=5.9e-08 Score=78.59 Aligned_cols=91 Identities=19% Similarity=0.181 Sum_probs=72.6
Q ss_pred cCcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEE
Q psy7826 103 MQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKF 182 (213)
Q Consensus 103 ~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~ 182 (213)
+..+.....+++.+ .+.+++.|||||+|.|.+|..|++.. .+|+++|+++.+++..++.... ..++++
T Consensus 13 L~d~~v~~kIv~~a--~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~-------~~n~~v 80 (259)
T COG0030 13 LIDKNVIDKIVEAA--NISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFAP-------YDNLTV 80 (259)
T ss_pred ccCHHHHHHHHHhc--CCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhccc-------ccceEE
Confidence 34445556777777 57778999999999999999999985 5899999999999999998763 468999
Q ss_pred EEcCCCCCCCCC-CCcCEEEEcCc
Q psy7826 183 VLGDGRKGYLDE-APYDIIHVGGS 205 (213)
Q Consensus 183 ~~~d~~~~~~~~-~~fD~Ii~~~~ 205 (213)
+.+|+.....+. ..++.|++|-.
T Consensus 81 i~~DaLk~d~~~l~~~~~vVaNlP 104 (259)
T COG0030 81 INGDALKFDFPSLAQPYKVVANLP 104 (259)
T ss_pred EeCchhcCcchhhcCCCEEEEcCC
Confidence 999998533321 15789988864
No 160
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.78 E-value=2.4e-08 Score=85.13 Aligned_cols=97 Identities=27% Similarity=0.343 Sum_probs=63.1
Q ss_pred CCccCcHHHHHHHHHHHhhh--CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccC
Q psy7826 100 GAHMQAPFQQAMVLDDLSEE--LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKD 177 (213)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~~--~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~ 177 (213)
+++...+.....+.+.+... ..++ +|||+.||.|.+|..+|+.. .+|+|+|+++.+++.|++|++.++ .
T Consensus 173 sFfQvN~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~-----i 243 (352)
T PF05958_consen 173 SFFQVNPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNG-----I 243 (352)
T ss_dssp S---SBHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT------
T ss_pred cCccCcHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcC-----C
Confidence 34455555555555444322 3333 89999999999999999875 699999999999999999999999 6
Q ss_pred CCeEEEEcCCCCCC----------------CCCCCcCEEEEcCc
Q psy7826 178 GRIKFVLGDGRKGY----------------LDEAPYDIIHVGGS 205 (213)
Q Consensus 178 ~~v~~~~~d~~~~~----------------~~~~~fD~Ii~~~~ 205 (213)
.|++|+.+++.+.. .....+|+|++|..
T Consensus 244 ~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPP 287 (352)
T PF05958_consen 244 DNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPP 287 (352)
T ss_dssp -SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---
T ss_pred CcceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCC
Confidence 89999988764211 01125899998853
No 161
>PRK04148 hypothetical protein; Provisional
Probab=98.76 E-value=5e-08 Score=71.33 Aligned_cols=74 Identities=20% Similarity=0.194 Sum_probs=57.9
Q ss_pred CCCEEEEEcCCccH-HHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCC-CCCcCE
Q psy7826 122 EGKKVLDIGSGNGY-FTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLD-EAPYDI 199 (213)
Q Consensus 122 ~~~~vLDiG~G~G~-~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~-~~~fD~ 199 (213)
++.+++|+|||+|. .+..|++. | ..|+++|+++.+++.++++ .+.++++|++++... -..+|+
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~-G--~~ViaIDi~~~aV~~a~~~------------~~~~v~dDlf~p~~~~y~~a~l 80 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES-G--FDVIVIDINEKAVEKAKKL------------GLNAFVDDLFNPNLEIYKNAKL 80 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC-C--CEEEEEECCHHHHHHHHHh------------CCeEEECcCCCCCHHHHhcCCE
Confidence 46789999999997 77777764 4 6999999999998888766 357999999865443 346899
Q ss_pred EEEcCcCccCC
Q psy7826 200 IHVGGSIEDIP 210 (213)
Q Consensus 200 Ii~~~~~~~~p 210 (213)
|++.-.+..+.
T Consensus 81 iysirpp~el~ 91 (134)
T PRK04148 81 IYSIRPPRDLQ 91 (134)
T ss_pred EEEeCCCHHHH
Confidence 99987766554
No 162
>KOG3191|consensus
Probab=98.75 E-value=1.4e-07 Score=71.67 Aligned_cols=76 Identities=18% Similarity=0.290 Sum_probs=66.1
Q ss_pred CCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEEE
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHV 202 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~ 202 (213)
...++|+|||+|..+.++++..++.....+.|+++++++...+.++.++ -.+..++.|+...... ++.|+++.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~------~~~~~V~tdl~~~l~~-~~VDvLvf 116 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR------VHIDVVRTDLLSGLRN-ESVDVLVF 116 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC------CccceeehhHHhhhcc-CCccEEEE
Confidence 5679999999999999999999888889999999999999999988776 3588999999866655 68999999
Q ss_pred cCc
Q psy7826 203 GGS 205 (213)
Q Consensus 203 ~~~ 205 (213)
|..
T Consensus 117 NPP 119 (209)
T KOG3191|consen 117 NPP 119 (209)
T ss_pred CCC
Confidence 863
No 163
>KOG1499|consensus
Probab=98.74 E-value=4.2e-08 Score=81.74 Aligned_cols=79 Identities=27% Similarity=0.288 Sum_probs=64.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCE
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDI 199 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~ 199 (213)
+-.++.|||+|||+|.++.+.|+. |. .+|+|+|.| .+.+.|++.+..+++ ...|+++.+.+++...+..+.|+
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akA-GA-~~V~aVe~S-~ia~~a~~iv~~N~~----~~ii~vi~gkvEdi~LP~eKVDi 130 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKA-GA-RKVYAVEAS-SIADFARKIVKDNGL----EDVITVIKGKVEDIELPVEKVDI 130 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHh-Cc-ceEEEEech-HHHHHHHHHHHhcCc----cceEEEeecceEEEecCccceeE
Confidence 457889999999999999999998 64 599999987 566999999999996 45689999998853333468999
Q ss_pred EEEcCc
Q psy7826 200 IHVGGS 205 (213)
Q Consensus 200 Ii~~~~ 205 (213)
|++-..
T Consensus 131 IvSEWM 136 (346)
T KOG1499|consen 131 IVSEWM 136 (346)
T ss_pred Eeehhh
Confidence 998653
No 164
>PLN02366 spermidine synthase
Probab=98.73 E-value=1.1e-07 Score=79.57 Aligned_cols=86 Identities=23% Similarity=0.196 Sum_probs=65.8
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC--CCCCcC
Q psy7826 121 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL--DEAPYD 198 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~--~~~~fD 198 (213)
.+.++||++|||.|+.+..+++. .+..+|+.+|+++.+++.+++.+...+. .++.++++++.+|+..... +.++||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~-~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAV-GFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhcc-ccCCCceEEEEChHHHHHhhccCCCCC
Confidence 45679999999999999999987 3446899999999999999998754321 0124689999999863221 235799
Q ss_pred EEEEcCcCcc
Q psy7826 199 IIHVGGSIED 208 (213)
Q Consensus 199 ~Ii~~~~~~~ 208 (213)
+|+++..-+.
T Consensus 168 vIi~D~~dp~ 177 (308)
T PLN02366 168 AIIVDSSDPV 177 (308)
T ss_pred EEEEcCCCCC
Confidence 9999976543
No 165
>KOG0820|consensus
Probab=98.72 E-value=1.6e-07 Score=75.66 Aligned_cols=97 Identities=25% Similarity=0.401 Sum_probs=75.9
Q ss_pred CCCccC-cHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccC
Q psy7826 99 YGAHMQ-APFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKD 177 (213)
Q Consensus 99 ~~~~~~-~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~ 177 (213)
.|+.+. .|.+.+.+++.. .+++++.|||+|.|||.+|..+.+. + .+|+++|+++.++...+++.+.... .
T Consensus 36 ~GQHilkNp~v~~~I~~ka--~~k~tD~VLEvGPGTGnLT~~lLe~-~--kkVvA~E~Dprmvael~krv~gtp~----~ 106 (315)
T KOG0820|consen 36 FGQHILKNPLVIDQIVEKA--DLKPTDVVLEVGPGTGNLTVKLLEA-G--KKVVAVEIDPRMVAELEKRVQGTPK----S 106 (315)
T ss_pred cchhhhcCHHHHHHHHhcc--CCCCCCEEEEeCCCCCHHHHHHHHh-c--CeEEEEecCcHHHHHHHHHhcCCCc----c
Confidence 444433 355566666666 5889999999999999999999998 4 6999999999999999999876543 4
Q ss_pred CCeEEEEcCCCCCCCCCCCcCEEEEcCcC
Q psy7826 178 GRIKFVLGDGRKGYLDEAPYDIIHVGGSI 206 (213)
Q Consensus 178 ~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~ 206 (213)
...++++||...... ..||.+++|...
T Consensus 107 ~kLqV~~gD~lK~d~--P~fd~cVsNlPy 133 (315)
T KOG0820|consen 107 GKLQVLHGDFLKTDL--PRFDGCVSNLPY 133 (315)
T ss_pred ceeeEEecccccCCC--cccceeeccCCc
Confidence 578999999975332 258999997643
No 166
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.70 E-value=8.1e-08 Score=76.74 Aligned_cols=79 Identities=22% Similarity=0.192 Sum_probs=68.6
Q ss_pred CEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCC---CCCCCCCCcCEE
Q psy7826 124 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR---KGYLDEAPYDII 200 (213)
Q Consensus 124 ~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~---~~~~~~~~fD~I 200 (213)
..+||||||.|.....+|+. .|+..++|+|+....+..+.+.+.+.+ .+|+.+++.|+. +.+.++++.|.|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~-nP~~nfiGiEi~~~~v~~~l~k~~~~~-----l~Nlri~~~DA~~~l~~~~~~~sl~~I 123 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKK-NPEKNFLGIEIRVPGVAKALKKIKELG-----LKNLRLLCGDAVEVLDYLIPDGSLDKI 123 (227)
T ss_pred cEEEEECCCCCHHHHHHHHH-CCCCCEEEEEEehHHHHHHHHHHHHcC-----CCcEEEEcCCHHHHHHhcCCCCCeeEE
Confidence 48999999999999999999 588899999999999999999999998 469999999997 334455589999
Q ss_pred EEcCcCcc
Q psy7826 201 HVGGSIED 208 (213)
Q Consensus 201 i~~~~~~~ 208 (213)
++++.-++
T Consensus 124 ~i~FPDPW 131 (227)
T COG0220 124 YINFPDPW 131 (227)
T ss_pred EEECCCCC
Confidence 99875433
No 167
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.70 E-value=7.3e-08 Score=75.52 Aligned_cols=80 Identities=25% Similarity=0.277 Sum_probs=63.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCC---CCCCCCcC
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKG---YLDEAPYD 198 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~---~~~~~~fD 198 (213)
....+||+|||.|.+...+|... |+..++|+|+....+..+.+.+.+.+ ..|+.++++|+... ..+.+++|
T Consensus 17 ~~~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~-----l~Nv~~~~~da~~~l~~~~~~~~v~ 90 (195)
T PF02390_consen 17 DNPLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRG-----LKNVRFLRGDARELLRRLFPPGSVD 90 (195)
T ss_dssp CCEEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHT-----TSSEEEEES-CTTHHHHHSTTTSEE
T ss_pred CCCeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhc-----ccceEEEEccHHHHHhhcccCCchh
Confidence 33489999999999999999994 88899999999999999999998888 68999999998742 23346899
Q ss_pred EEEEcCcCc
Q psy7826 199 IIHVGGSIE 207 (213)
Q Consensus 199 ~Ii~~~~~~ 207 (213)
.|++++.-+
T Consensus 91 ~i~i~FPDP 99 (195)
T PF02390_consen 91 RIYINFPDP 99 (195)
T ss_dssp EEEEES---
T ss_pred eEEEeCCCC
Confidence 999987543
No 168
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.68 E-value=4e-08 Score=76.19 Aligned_cols=98 Identities=19% Similarity=0.226 Sum_probs=68.8
Q ss_pred CcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEE
Q psy7826 104 QAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFV 183 (213)
Q Consensus 104 ~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~ 183 (213)
+...+...+...+....-++.++||+.||+|..+...+.+ |. .+|+.||.++..++..++|++..+. ..++.++
T Consensus 24 T~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSR-GA-~~v~fVE~~~~a~~~i~~N~~~l~~----~~~~~v~ 97 (183)
T PF03602_consen 24 TTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSR-GA-KSVVFVEKNRKAIKIIKKNLEKLGL----EDKIRVI 97 (183)
T ss_dssp SSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHT-T--SEEEEEES-HHHHHHHHHHHHHHT-----GGGEEEE
T ss_pred CcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhc-CC-CeEEEEECCHHHHHHHHHHHHHhCC----Ccceeee
Confidence 3455556677777422146889999999999999988887 54 4999999999999999999999884 3458999
Q ss_pred EcCCCCCC----CCCCCcCEEEEcCcCc
Q psy7826 184 LGDGRKGY----LDEAPYDIIHVGGSIE 207 (213)
Q Consensus 184 ~~d~~~~~----~~~~~fD~Ii~~~~~~ 207 (213)
..|+...+ ....+||+|++|....
T Consensus 98 ~~d~~~~l~~~~~~~~~fDiIflDPPY~ 125 (183)
T PF03602_consen 98 KGDAFKFLLKLAKKGEKFDIIFLDPPYA 125 (183)
T ss_dssp ESSHHHHHHHHHHCTS-EEEEEE--STT
T ss_pred ccCHHHHHHhhcccCCCceEEEECCCcc
Confidence 99975222 1246899999996543
No 169
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.68 E-value=1e-07 Score=81.93 Aligned_cols=77 Identities=21% Similarity=0.156 Sum_probs=63.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEE
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIH 201 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii 201 (213)
++.+|||++||+|..+..++...+ ..+|+++|+++.+++.+++|++.++ ..++++.++|+.........||+|+
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~-----~~~~~v~~~Da~~~l~~~~~fD~V~ 130 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNG-----LENEKVFNKDANALLHEERKFDVVD 130 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhC-----CCceEEEhhhHHHHHhhcCCCCEEE
Confidence 346899999999999999998753 3489999999999999999999988 4678899999864332134799999
Q ss_pred EcC
Q psy7826 202 VGG 204 (213)
Q Consensus 202 ~~~ 204 (213)
+|.
T Consensus 131 lDP 133 (382)
T PRK04338 131 IDP 133 (382)
T ss_pred ECC
Confidence 985
No 170
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.66 E-value=1.6e-07 Score=70.46 Aligned_cols=93 Identities=17% Similarity=0.210 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcC
Q psy7826 107 FQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGD 186 (213)
Q Consensus 107 ~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d 186 (213)
...+.|+..+ ++..|.-|||+|.|||.+|..+.++.-+...++++|.|++.+....+. .+.+.++.+|
T Consensus 35 ~lA~~M~s~I--~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~----------~p~~~ii~gd 102 (194)
T COG3963 35 ILARKMASVI--DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL----------YPGVNIINGD 102 (194)
T ss_pred HHHHHHHhcc--CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh----------CCCccccccc
Confidence 3445566666 577888999999999999999988743556899999999999988877 5667788998
Q ss_pred CCCC-----CCCCCCcCEEEEcCcCccCCC
Q psy7826 187 GRKG-----YLDEAPYDIIHVGGSIEDIPE 211 (213)
Q Consensus 187 ~~~~-----~~~~~~fD~Ii~~~~~~~~p~ 211 (213)
+... ...+..||.|++...+-++|-
T Consensus 103 a~~l~~~l~e~~gq~~D~viS~lPll~~P~ 132 (194)
T COG3963 103 AFDLRTTLGEHKGQFFDSVISGLPLLNFPM 132 (194)
T ss_pred hhhHHHHHhhcCCCeeeeEEeccccccCcH
Confidence 8631 123456999999998887773
No 171
>PRK01581 speE spermidine synthase; Validated
Probab=98.65 E-value=1.6e-07 Score=79.54 Aligned_cols=84 Identities=19% Similarity=0.194 Sum_probs=61.5
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHH--HhhCCCCCccCCCeEEEEcCCCCCCC-CCCCc
Q psy7826 121 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN--VISGNPEFVKDGRIKFVLGDGRKGYL-DEAPY 197 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~--~~~~gl~~~~~~~v~~~~~d~~~~~~-~~~~f 197 (213)
....+||++|||.|+.+..+++. ++..+|+++|+++.+++.|++. +...+-..++.++++++.+|+..... ..+.|
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 44569999999999998888886 3556999999999999999972 11110000125789999999974322 23579
Q ss_pred CEEEEcCc
Q psy7826 198 DIIHVGGS 205 (213)
Q Consensus 198 D~Ii~~~~ 205 (213)
|+|+++..
T Consensus 228 DVIIvDl~ 235 (374)
T PRK01581 228 DVIIIDFP 235 (374)
T ss_pred cEEEEcCC
Confidence 99999964
No 172
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.64 E-value=2.3e-07 Score=76.37 Aligned_cols=83 Identities=22% Similarity=0.214 Sum_probs=62.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC-CCCCcCEE
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-DEAPYDII 200 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~-~~~~fD~I 200 (213)
.+.+||++|||+|..+..+++.. +..+++++|+++.+++.+++.+...+ .....++++++.+|+..... ..++||+|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~-~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLA-GSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhc-ccccCCceEEEECchHHHHHhCCCCccEE
Confidence 34599999999999999888873 44689999999999999999875532 11124578899999763221 13589999
Q ss_pred EEcCcC
Q psy7826 201 HVGGSI 206 (213)
Q Consensus 201 i~~~~~ 206 (213)
+++..-
T Consensus 150 i~D~~~ 155 (270)
T TIGR00417 150 IVDSTD 155 (270)
T ss_pred EEeCCC
Confidence 998763
No 173
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.62 E-value=2.2e-07 Score=74.06 Aligned_cols=104 Identities=24% Similarity=0.264 Sum_probs=71.4
Q ss_pred cCcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhh-C------CCCCc
Q psy7826 103 MQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS-G------NPEFV 175 (213)
Q Consensus 103 ~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~-~------gl~~~ 175 (213)
-.+|.....+-. + ...++.+||..|||.|.-..+||++ | .+|+|+|+|+.+++.+.+.... . +....
T Consensus 21 ~~~p~L~~~~~~-l--~~~~~~rvLvPgCG~g~D~~~La~~-G--~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~ 94 (218)
T PF05724_consen 21 EPNPALVEYLDS-L--ALKPGGRVLVPGCGKGYDMLWLAEQ-G--HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRY 94 (218)
T ss_dssp TSTHHHHHHHHH-H--TTSTSEEEEETTTTTSCHHHHHHHT-T--EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEE
T ss_pred CCCHHHHHHHHh-c--CCCCCCeEEEeCCCChHHHHHHHHC-C--CeEEEEecCHHHHHHHHHHhccCCCcccccceeee
Confidence 345555544333 3 3667789999999999999999987 5 6999999999999998433211 0 00001
Q ss_pred cCCCeEEEEcCCCCCCCC-CCCcCEEEEcCcCccCCCC
Q psy7826 176 KDGRIKFVLGDGRKGYLD-EAPYDIIHVGGSIEDIPEG 212 (213)
Q Consensus 176 ~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~~~~~p~~ 212 (213)
...+|++.++|+....+. .++||+|+=-+++.-+|+.
T Consensus 95 ~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~ 132 (218)
T PF05724_consen 95 QAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPE 132 (218)
T ss_dssp TTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GG
T ss_pred cCCceEEEEcccccCChhhcCCceEEEEecccccCCHH
Confidence 134789999999864333 2479999999999988865
No 174
>KOG2187|consensus
Probab=98.61 E-value=4.6e-08 Score=85.01 Aligned_cols=71 Identities=27% Similarity=0.372 Sum_probs=61.1
Q ss_pred HHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCC
Q psy7826 109 QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR 188 (213)
Q Consensus 109 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~ 188 (213)
...+-+.+ .+..++.++|+|||||.++..+|+.. .+|+|+|+++++++.|++|++.+| ..|.+|++|.++
T Consensus 372 ys~i~e~~--~l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~Ng-----isNa~Fi~gqaE 441 (534)
T KOG2187|consen 372 YSTIGEWA--GLPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQING-----ISNATFIVGQAE 441 (534)
T ss_pred HHHHHHHh--CCCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcC-----ccceeeeecchh
Confidence 44444555 46777899999999999999999986 699999999999999999999999 689999999665
Q ss_pred C
Q psy7826 189 K 189 (213)
Q Consensus 189 ~ 189 (213)
+
T Consensus 442 ~ 442 (534)
T KOG2187|consen 442 D 442 (534)
T ss_pred h
Confidence 3
No 175
>PRK03612 spermidine synthase; Provisional
Probab=98.61 E-value=2.2e-07 Score=83.21 Aligned_cols=87 Identities=18% Similarity=0.179 Sum_probs=63.7
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHH--HhhCCCCCccCCCeEEEEcCCCCCCC-CCCCc
Q psy7826 121 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN--VISGNPEFVKDGRIKFVLGDGRKGYL-DEAPY 197 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~--~~~~gl~~~~~~~v~~~~~d~~~~~~-~~~~f 197 (213)
++.++|||+|||+|..+..+++. ++..+++++|+++++++.++++ +...+-...+.++++++.+|+..... ..++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 45679999999999999999876 3336999999999999999994 22211001124689999999874221 23589
Q ss_pred CEEEEcCcCcc
Q psy7826 198 DIIHVGGSIED 208 (213)
Q Consensus 198 D~Ii~~~~~~~ 208 (213)
|+|++|..-+.
T Consensus 375 DvIi~D~~~~~ 385 (521)
T PRK03612 375 DVIIVDLPDPS 385 (521)
T ss_pred CEEEEeCCCCC
Confidence 99999975443
No 176
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.59 E-value=1e-06 Score=67.89 Aligned_cols=99 Identities=17% Similarity=0.253 Sum_probs=76.3
Q ss_pred cCcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEE
Q psy7826 103 MQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKF 182 (213)
Q Consensus 103 ~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~ 182 (213)
-+.+.+...+...+.+..-.|.++||+.||+|.++...+.+ |. .+++.+|.+...+...++|++.+++ ..++.+
T Consensus 24 PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSR-GA-~~~~~vE~~~~a~~~l~~N~~~l~~----~~~~~~ 97 (187)
T COG0742 24 PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSR-GA-ARVVFVEKDRKAVKILKENLKALGL----EGEARV 97 (187)
T ss_pred CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhC-CC-ceEEEEecCHHHHHHHHHHHHHhCC----ccceEE
Confidence 34455556667777421256889999999999999998887 43 5999999999999999999999885 568899
Q ss_pred EEcCCCCC---CCCCCCcCEEEEcCcCc
Q psy7826 183 VLGDGRKG---YLDEAPYDIIHVGGSIE 207 (213)
Q Consensus 183 ~~~d~~~~---~~~~~~fD~Ii~~~~~~ 207 (213)
+..|+... .....+||+|++|....
T Consensus 98 ~~~da~~~L~~~~~~~~FDlVflDPPy~ 125 (187)
T COG0742 98 LRNDALRALKQLGTREPFDLVFLDPPYA 125 (187)
T ss_pred EeecHHHHHHhcCCCCcccEEEeCCCCc
Confidence 99998732 11222599999997654
No 177
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.59 E-value=2.1e-07 Score=78.21 Aligned_cols=81 Identities=31% Similarity=0.403 Sum_probs=68.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCE
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDI 199 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~ 199 (213)
..+|++|+|+-||-|++|..+|+. +. .+|+++|+++++++..++|++.+++ ...++.+++|+.+..+....+|.
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~-g~-~~V~A~diNP~A~~~L~eNi~LN~v----~~~v~~i~gD~rev~~~~~~aDr 259 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKK-GR-PKVYAIDINPDAVEYLKENIRLNKV----EGRVEPILGDAREVAPELGVADR 259 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhc-CC-ceEEEEecCHHHHHHHHHHHHhcCc----cceeeEEeccHHHhhhccccCCE
Confidence 456999999999999999999998 44 3599999999999999999999985 34599999999865444367999
Q ss_pred EEEcCcC
Q psy7826 200 IHVGGSI 206 (213)
Q Consensus 200 Ii~~~~~ 206 (213)
|+++...
T Consensus 260 Iim~~p~ 266 (341)
T COG2520 260 IIMGLPK 266 (341)
T ss_pred EEeCCCC
Confidence 9998754
No 178
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.55 E-value=5.9e-07 Score=74.64 Aligned_cols=95 Identities=21% Similarity=0.222 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEc
Q psy7826 106 PFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLG 185 (213)
Q Consensus 106 ~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~ 185 (213)
|-+...+++.+ .+.++..++|.-+|.|+.|..+++.++ +++|+|+|.++.+++.+++.+..++ .+++++++
T Consensus 6 pVll~Evl~~L--~~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~~------~R~~~i~~ 76 (305)
T TIGR00006 6 SVLLDEVVEGL--NIKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDFE------GRVVLIHD 76 (305)
T ss_pred chhHHHHHHhc--CcCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhcC------CcEEEEeC
Confidence 33446677777 467888999999999999999999874 4899999999999999999987643 57999999
Q ss_pred CCCCC---C--CCCCCcCEEEEcCcCccC
Q psy7826 186 DGRKG---Y--LDEAPYDIIHVGGSIEDI 209 (213)
Q Consensus 186 d~~~~---~--~~~~~fD~Ii~~~~~~~~ 209 (213)
+.... . ....++|.|++|.++..+
T Consensus 77 nF~~l~~~l~~~~~~~vDgIl~DLGvSS~ 105 (305)
T TIGR00006 77 NFANFFEHLDELLVTKIDGILVDLGVSSP 105 (305)
T ss_pred CHHHHHHHHHhcCCCcccEEEEeccCCHh
Confidence 87631 1 122469999999887654
No 179
>KOG4300|consensus
Probab=98.55 E-value=1e-07 Score=73.92 Aligned_cols=82 Identities=18% Similarity=0.331 Sum_probs=64.8
Q ss_pred CEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeE-EEEcCCCCCC-CCCCCcCEEE
Q psy7826 124 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIK-FVLGDGRKGY-LDEAPYDIIH 201 (213)
Q Consensus 124 ~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~-~~~~d~~~~~-~~~~~fD~Ii 201 (213)
..|||+|||||.---+.-.. |..+|+++|.++.|-+.+.+.++... ..++. |++++.+... .+++++|+|+
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k-----~~~~~~fvva~ge~l~~l~d~s~DtVV 150 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKK-----PLQVERFVVADGENLPQLADGSYDTVV 150 (252)
T ss_pred cceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhcc-----CcceEEEEeechhcCcccccCCeeeEE
Confidence 35899999999865443321 55799999999999999999988765 56777 9999998533 3567999999
Q ss_pred EcCcCccCCCC
Q psy7826 202 VGGSIEDIPEG 212 (213)
Q Consensus 202 ~~~~~~~~p~~ 212 (213)
...+++.+.++
T Consensus 151 ~TlvLCSve~~ 161 (252)
T KOG4300|consen 151 CTLVLCSVEDP 161 (252)
T ss_pred EEEEEeccCCH
Confidence 99998887664
No 180
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.55 E-value=2.5e-07 Score=79.31 Aligned_cols=79 Identities=24% Similarity=0.318 Sum_probs=65.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC----CCCCCc
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY----LDEAPY 197 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~----~~~~~f 197 (213)
.|++|||+.|=||++|.+.|.. | ..+|++||+|...++.|++|++-+|+ +..++.|+++|+...+ ....+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g-G-A~~vt~VD~S~~al~~a~~N~~LNg~---~~~~~~~i~~Dvf~~l~~~~~~g~~f 291 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG-G-ASEVTSVDLSKRALEWARENAELNGL---DGDRHRFIVGDVFKWLRKAERRGEKF 291 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc-C-CCceEEEeccHHHHHHHHHHHHhcCC---CccceeeehhhHHHHHHHHHhcCCcc
Confidence 3999999999999999998875 4 34999999999999999999999984 2346899999997422 223489
Q ss_pred CEEEEcCc
Q psy7826 198 DIIHVGGS 205 (213)
Q Consensus 198 D~Ii~~~~ 205 (213)
|+|++|..
T Consensus 292 DlIilDPP 299 (393)
T COG1092 292 DLIILDPP 299 (393)
T ss_pred cEEEECCc
Confidence 99999953
No 181
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.54 E-value=1.3e-08 Score=80.00 Aligned_cols=90 Identities=16% Similarity=0.260 Sum_probs=61.9
Q ss_pred cHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEE
Q psy7826 105 APFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVL 184 (213)
Q Consensus 105 ~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~ 184 (213)
-|...+.++..+ ...+-.++||+|||||..+-.+-.+. .+++|+|+|++|+++|.++- + ++ .+.+
T Consensus 110 vP~~l~emI~~~--~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eKg----~----YD--~L~~ 174 (287)
T COG4976 110 VPELLAEMIGKA--DLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEKG----L----YD--TLYV 174 (287)
T ss_pred cHHHHHHHHHhc--cCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhcc----c----hH--HHHH
Confidence 355555555555 34456799999999999999988876 58999999999999998762 1 22 2334
Q ss_pred cCCCCCC--CCCCCcCEEEEcCcCccC
Q psy7826 185 GDGRKGY--LDEAPYDIIHVGGSIEDI 209 (213)
Q Consensus 185 ~d~~~~~--~~~~~fD~Ii~~~~~~~~ 209 (213)
+|+.... ....+||+|.+..++.++
T Consensus 175 Aea~~Fl~~~~~er~DLi~AaDVl~Yl 201 (287)
T COG4976 175 AEAVLFLEDLTQERFDLIVAADVLPYL 201 (287)
T ss_pred HHHHHHhhhccCCcccchhhhhHHHhh
Confidence 4443211 234579999887766554
No 182
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.51 E-value=6.1e-07 Score=75.18 Aligned_cols=103 Identities=21% Similarity=0.242 Sum_probs=67.2
Q ss_pred CCccCcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHc------CCCCEEEEEeCChHHHHHHHHHHhhCCCC
Q psy7826 100 GAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCV------GKTGKVIGIEHIPQLVQRATHNVISGNPE 173 (213)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~------~~~~~v~gvD~s~~~l~~a~~~~~~~gl~ 173 (213)
|++.+...+...++.++ ...++.+|+|-+||+|.+...+.+.+ ....+++|+|+++.++..++-++.-.+.
T Consensus 26 G~~~TP~~i~~l~~~~~--~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~- 102 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLL--NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI- 102 (311)
T ss_dssp GGC---HHHHHHHHHHH--TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH-
T ss_pred ceeehHHHHHHHHHhhh--hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc-
Confidence 34444455667777777 56778899999999999998887743 1446999999999999999988765552
Q ss_pred CccCCCeEEEEcCCCCCCCC--CCCcCEEEEcCcCc
Q psy7826 174 FVKDGRIKFVLGDGRKGYLD--EAPYDIIHVGGSIE 207 (213)
Q Consensus 174 ~~~~~~v~~~~~d~~~~~~~--~~~fD~Ii~~~~~~ 207 (213)
+..+..+..+|....... ...||+|+++....
T Consensus 103 --~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~ 136 (311)
T PF02384_consen 103 --DNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFG 136 (311)
T ss_dssp --HCBGCEEEES-TTTSHSCTST--EEEEEEE--CT
T ss_pred --ccccccccccccccccccccccccccccCCCCcc
Confidence 122356888998632222 35799999997654
No 183
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.51 E-value=6.3e-07 Score=68.90 Aligned_cols=85 Identities=22% Similarity=0.312 Sum_probs=54.5
Q ss_pred hCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC----CCC
Q psy7826 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY----LDE 194 (213)
Q Consensus 119 ~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~----~~~ 194 (213)
...++.+|||+|||+|..+..++... ...+|+..|.++ .++..+.|++.++. ....++++...|..+.. ...
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~--~~~~~v~v~~L~Wg~~~~~~~~~~ 117 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGS--LLDGRVSVRPLDWGDELDSDLLEP 117 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT----------EEEE--TTS-HHHHHHS-
T ss_pred hhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccc--cccccccCcEEEecCccccccccc
Confidence 35678899999999999999999884 446999999998 99999999988751 00456788877764321 223
Q ss_pred CCcCEEEEcCcCc
Q psy7826 195 APYDIIHVGGSIE 207 (213)
Q Consensus 195 ~~fD~Ii~~~~~~ 207 (213)
.+||+|+....+-
T Consensus 118 ~~~D~IlasDv~Y 130 (173)
T PF10294_consen 118 HSFDVILASDVLY 130 (173)
T ss_dssp SSBSEEEEES--S
T ss_pred ccCCEEEEecccc
Confidence 4799999887654
No 184
>KOG1500|consensus
Probab=98.49 E-value=6.1e-07 Score=74.44 Aligned_cols=76 Identities=30% Similarity=0.354 Sum_probs=63.5
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEE
Q psy7826 121 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 200 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~I 200 (213)
..++.|||+|||+|.++.+.++. |. .+|+++|.| +|.+.|++..+.+++ .++|.++.|.+++...+ ++.|+|
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqA-GA-~~vYAvEAS-~MAqyA~~Lv~~N~~----~~rItVI~GKiEdieLP-Ek~Dvi 247 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQA-GA-KKVYAVEAS-EMAQYARKLVASNNL----ADRITVIPGKIEDIELP-EKVDVI 247 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHh-Cc-ceEEEEehh-HHHHHHHHHHhcCCc----cceEEEccCccccccCc-hhccEE
Confidence 35678999999999999988887 54 599999987 799999999998886 78999999999864444 478999
Q ss_pred EEcC
Q psy7826 201 HVGG 204 (213)
Q Consensus 201 i~~~ 204 (213)
|+-.
T Consensus 248 ISEP 251 (517)
T KOG1500|consen 248 ISEP 251 (517)
T ss_pred Eecc
Confidence 9754
No 185
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.48 E-value=8.4e-07 Score=74.32 Aligned_cols=93 Identities=19% Similarity=0.146 Sum_probs=73.0
Q ss_pred CcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEE
Q psy7826 104 QAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFV 183 (213)
Q Consensus 104 ~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~ 183 (213)
..|.....++++. ..++|+.|||-=||||++.....-. | .+++|.|++..|++.++.|++.++ .....+.
T Consensus 181 ~~P~lAR~mVNLa--~v~~G~~vlDPFcGTGgiLiEagl~-G--~~viG~Did~~mv~gak~Nl~~y~-----i~~~~~~ 250 (347)
T COG1041 181 MDPRLARAMVNLA--RVKRGELVLDPFCGTGGILIEAGLM-G--ARVIGSDIDERMVRGAKINLEYYG-----IEDYPVL 250 (347)
T ss_pred cCHHHHHHHHHHh--ccccCCEeecCcCCccHHHHhhhhc-C--ceEeecchHHHHHhhhhhhhhhhC-----cCceeEE
Confidence 3455555566666 6899999999999999999886554 6 799999999999999999999988 4555555
Q ss_pred Ec-CCCCCCCCCCCcCEEEEcCcC
Q psy7826 184 LG-DGRKGYLDEAPYDIIHVGGSI 206 (213)
Q Consensus 184 ~~-d~~~~~~~~~~fD~Ii~~~~~ 206 (213)
.. |+.....+..++|.|+.+...
T Consensus 251 ~~~Da~~lpl~~~~vdaIatDPPY 274 (347)
T COG1041 251 KVLDATNLPLRDNSVDAIATDPPY 274 (347)
T ss_pred EecccccCCCCCCccceEEecCCC
Confidence 55 998544444479999998654
No 186
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.46 E-value=1.6e-06 Score=71.11 Aligned_cols=91 Identities=26% Similarity=0.311 Sum_probs=70.6
Q ss_pred ccCcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeE
Q psy7826 102 HMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIK 181 (213)
Q Consensus 102 ~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~ 181 (213)
++..+.....+++.+ .+.++..|||+|+|+|.+|..|++.. .+++++|+++.+.+..++.... .++++
T Consensus 12 FL~~~~~~~~Iv~~~--~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~-------~~~~~ 79 (262)
T PF00398_consen 12 FLVDPNIADKIVDAL--DLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFAS-------NPNVE 79 (262)
T ss_dssp EEEHHHHHHHHHHHH--TCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTT-------CSSEE
T ss_pred eeCCHHHHHHHHHhc--CCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhh-------cccce
Confidence 355677778888888 56788999999999999999999984 6999999999999999998763 46899
Q ss_pred EEEcCCCCCCCCC---CCcCEEEEcC
Q psy7826 182 FVLGDGRKGYLDE---APYDIIHVGG 204 (213)
Q Consensus 182 ~~~~d~~~~~~~~---~~fD~Ii~~~ 204 (213)
++.+|+....... .....|+.+-
T Consensus 80 vi~~D~l~~~~~~~~~~~~~~vv~Nl 105 (262)
T PF00398_consen 80 VINGDFLKWDLYDLLKNQPLLVVGNL 105 (262)
T ss_dssp EEES-TTTSCGGGHCSSSEEEEEEEE
T ss_pred eeecchhccccHHhhcCCceEEEEEe
Confidence 9999998532221 1344666553
No 187
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.45 E-value=7e-07 Score=73.70 Aligned_cols=96 Identities=22% Similarity=0.269 Sum_probs=67.3
Q ss_pred CCccCcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCC
Q psy7826 100 GAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR 179 (213)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~ 179 (213)
|.+.-+.....++... ..+++|||+.|=||++|.+.+.. | ..+|++||.|..+++.+++|+..+|+ +..+
T Consensus 106 GlFlDqR~nR~~v~~~-----~~gkrvLnlFsYTGgfsv~Aa~g-G-A~~v~~VD~S~~al~~a~~N~~lNg~---~~~~ 175 (286)
T PF10672_consen 106 GLFLDQRENRKWVRKY-----AKGKRVLNLFSYTGGFSVAAAAG-G-AKEVVSVDSSKRALEWAKENAALNGL---DLDR 175 (286)
T ss_dssp SS-GGGHHHHHHHHHH-----CTTCEEEEET-TTTHHHHHHHHT-T-ESEEEEEES-HHHHHHHHHHHHHTT----CCTC
T ss_pred eEcHHHHhhHHHHHHH-----cCCCceEEecCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHcCC---Cccc
Confidence 5556666655544442 35789999999999999987754 3 34899999999999999999999984 1357
Q ss_pred eEEEEcCCCCCCC---CCCCcCEEEEcCc
Q psy7826 180 IKFVLGDGRKGYL---DEAPYDIIHVGGS 205 (213)
Q Consensus 180 v~~~~~d~~~~~~---~~~~fD~Ii~~~~ 205 (213)
+++++.|+...+. ..++||+||++..
T Consensus 176 ~~~~~~Dvf~~l~~~~~~~~fD~IIlDPP 204 (286)
T PF10672_consen 176 HRFIQGDVFKFLKRLKKGGRFDLIILDPP 204 (286)
T ss_dssp EEEEES-HHHHHHHHHHTT-EEEEEE--S
T ss_pred eEEEecCHHHHHHHHhcCCCCCEEEECCC
Confidence 9999999874221 2458999999964
No 188
>KOG1663|consensus
Probab=98.45 E-value=2.3e-06 Score=67.61 Aligned_cols=89 Identities=22% Similarity=0.343 Sum_probs=73.3
Q ss_pred HHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC
Q psy7826 112 VLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY 191 (213)
Q Consensus 112 ~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~ 191 (213)
+++.+. .....+++||+|.=||+.+..+|..++++|+|+++|+++...+.+.+..+..|. .+.|+++++++.+..
T Consensus 64 fl~~li-~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv----~~KI~~i~g~a~esL 138 (237)
T KOG1663|consen 64 FLQMLI-RLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV----DHKITFIEGPALESL 138 (237)
T ss_pred HHHHHH-HHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc----cceeeeeecchhhhH
Confidence 344343 344667999999999999999999998889999999999999999999999887 678999999987321
Q ss_pred ----C--CCCCcCEEEEcCc
Q psy7826 192 ----L--DEAPYDIIHVGGS 205 (213)
Q Consensus 192 ----~--~~~~fD~Ii~~~~ 205 (213)
. +.+.||.+|+++-
T Consensus 139 d~l~~~~~~~tfDfaFvDad 158 (237)
T KOG1663|consen 139 DELLADGESGTFDFAFVDAD 158 (237)
T ss_pred HHHHhcCCCCceeEEEEccc
Confidence 1 2468999999874
No 189
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.44 E-value=8e-07 Score=70.05 Aligned_cols=75 Identities=31% Similarity=0.457 Sum_probs=58.3
Q ss_pred EEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEEEcCc
Q psy7826 126 VLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGS 205 (213)
Q Consensus 126 vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~ 205 (213)
|.|+||--|++..+|.+. +...+++++|+++..++.|++++++.|+ .++|+++.+|......+....|.|++.+.
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l----~~~i~~rlgdGL~~l~~~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGL----EDRIEVRLGDGLEVLKPGEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-----TTTEEEEE-SGGGG--GGG---EEEEEEE
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCC----cccEEEEECCcccccCCCCCCCEEEEecC
Confidence 689999999999999998 5656899999999999999999999997 67899999998865555434788877653
No 190
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.44 E-value=1.3e-06 Score=76.51 Aligned_cols=77 Identities=27% Similarity=0.316 Sum_probs=56.4
Q ss_pred CCEEEEEcCCccHHHHHHHHHc---CCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCE
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCV---GKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDI 199 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~---~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~ 199 (213)
+..|+|+|||+|.++...++.. +...+|+++|.++.++...++.++.++. .++|+++.+|+.+...+ .++|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w----~~~V~vi~~d~r~v~lp-ekvDI 261 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW----GDKVTVIHGDMREVELP-EKVDI 261 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT----TTTEEEEES-TTTSCHS-S-EEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC----CCeEEEEeCcccCCCCC-CceeE
Confidence 4679999999999987766541 2346999999999999888777677764 47899999999864444 48999
Q ss_pred EEEcC
Q psy7826 200 IHVGG 204 (213)
Q Consensus 200 Ii~~~ 204 (213)
|++=.
T Consensus 262 IVSEl 266 (448)
T PF05185_consen 262 IVSEL 266 (448)
T ss_dssp EEE--
T ss_pred EEEec
Confidence 99743
No 191
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.43 E-value=5.3e-07 Score=72.17 Aligned_cols=40 Identities=30% Similarity=0.359 Sum_probs=34.6
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHH
Q psy7826 121 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQR 162 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~ 162 (213)
.++.+|||+|||||++|..+++. |. .+|+|+|+++.++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-ga-~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-GA-KEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-CC-CEEEEEeCCHHHHHH
Confidence 36779999999999999999987 43 599999999987765
No 192
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=5.6e-07 Score=70.34 Aligned_cols=71 Identities=24% Similarity=0.388 Sum_probs=57.5
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC--------
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-------- 191 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~-------- 191 (213)
+.++.+|+|+||.+|+++..+++.+++.++|+|+|+.+-.. .++|.++++|++...
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----------------~~~V~~iq~d~~~~~~~~~l~~~ 106 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----------------IPGVIFLQGDITDEDTLEKLLEA 106 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----------------CCCceEEeeeccCccHHHHHHHH
Confidence 57889999999999999999999998778899999986211 467999999998321
Q ss_pred CCCCCcCEEEEcCcC
Q psy7826 192 LDEAPYDIIHVGGSI 206 (213)
Q Consensus 192 ~~~~~fD~Ii~~~~~ 206 (213)
....++|+|+++.++
T Consensus 107 l~~~~~DvV~sD~ap 121 (205)
T COG0293 107 LGGAPVDVVLSDMAP 121 (205)
T ss_pred cCCCCcceEEecCCC
Confidence 123357999999987
No 193
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.41 E-value=1.8e-05 Score=67.27 Aligned_cols=97 Identities=15% Similarity=0.097 Sum_probs=74.5
Q ss_pred cCcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCC--------------------------------C--
Q psy7826 103 MQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKT--------------------------------G-- 148 (213)
Q Consensus 103 ~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~--------------------------------~-- 148 (213)
-..+.+.+.++.+. ...++..++|-=||+|.+....|... .+ +
T Consensus 174 pLketLAaAil~la--gw~~~~pl~DPmCGSGTi~IEAAl~~-~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~ 250 (381)
T COG0116 174 PLKETLAAAILLLA--GWKPDEPLLDPMCGSGTILIEAALIA-ANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARR 250 (381)
T ss_pred CchHHHHHHHHHHc--CCCCCCccccCCCCccHHHHHHHHhc-cccCCccccccchhhhhhccHHHHHHHHHHHHHHHhh
Confidence 33444444455444 56777899999999999998887763 21 1
Q ss_pred -----EEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEEEcCcC
Q psy7826 149 -----KVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSI 206 (213)
Q Consensus 149 -----~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~ 206 (213)
.++|+|+++.+++.|+.|+.+.|+ .+.|+|.++|+.....+...+|+||+|...
T Consensus 251 ~~~~~~~~G~Did~r~i~~Ak~NA~~AGv----~d~I~f~~~d~~~l~~~~~~~gvvI~NPPY 309 (381)
T COG0116 251 GKELPIIYGSDIDPRHIEGAKANARAAGV----GDLIEFKQADATDLKEPLEEYGVVISNPPY 309 (381)
T ss_pred cCccceEEEecCCHHHHHHHHHHHHhcCC----CceEEEEEcchhhCCCCCCcCCEEEeCCCc
Confidence 378999999999999999999997 678999999998543332579999999753
No 194
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.37 E-value=1.8e-06 Score=63.88 Aligned_cols=58 Identities=24% Similarity=0.310 Sum_probs=50.2
Q ss_pred EEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCC
Q psy7826 125 KVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR 188 (213)
Q Consensus 125 ~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~ 188 (213)
+++|+|||.|..+..+++. ++..+++++|.++.+.+.++++++.++ ..+++++...+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~-~~~~~v~~~E~~~~~~~~l~~~~~~n~-----~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARK-GAEGRVIAFEPLPDAYEILEENVKLNN-----LPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHh-CCCCEEEEEecCHHHHHHHHHHHHHcC-----CCcEEEEEeeee
Confidence 4899999999999999988 466799999999999999999998887 456777776654
No 195
>KOG2730|consensus
Probab=98.35 E-value=3.3e-07 Score=71.72 Aligned_cols=78 Identities=24% Similarity=0.197 Sum_probs=62.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCC----CCCc
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLD----EAPY 197 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~----~~~f 197 (213)
....|+|.-||-|+-+..++... ..|+++|+++-.+..|++|++-+|+ .++|+|++||+.+.... ...+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI----~~rItFI~GD~ld~~~~lq~~K~~~ 166 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGV----PDRITFICGDFLDLASKLKADKIKY 166 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecC----CceeEEEechHHHHHHHHhhhhhee
Confidence 55689999999999999999884 6899999999999999999999997 66899999998743322 1234
Q ss_pred CEEEEcCcC
Q psy7826 198 DIIHVGGSI 206 (213)
Q Consensus 198 D~Ii~~~~~ 206 (213)
|.|+....+
T Consensus 167 ~~vf~sppw 175 (263)
T KOG2730|consen 167 DCVFLSPPW 175 (263)
T ss_pred eeeecCCCC
Confidence 566655443
No 196
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.33 E-value=4.3e-06 Score=67.50 Aligned_cols=77 Identities=23% Similarity=0.373 Sum_probs=62.0
Q ss_pred hCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcC
Q psy7826 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYD 198 (213)
Q Consensus 119 ~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD 198 (213)
...+..+|+|+|+|.|.++..+++.. |+.+++.+|. ++.++.+++ . ++|+++.+|..+.++. +|
T Consensus 97 d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~-----~------~rv~~~~gd~f~~~P~---~D 160 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE-----A------DRVEFVPGDFFDPLPV---AD 160 (241)
T ss_dssp TTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH-----T------TTEEEEES-TTTCCSS---ES
T ss_pred cccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc-----c------cccccccccHHhhhcc---cc
Confidence 35566789999999999999999996 8889999998 788888877 1 4899999999855443 99
Q ss_pred EEEEcCcCccCCC
Q psy7826 199 IIHVGGSIEDIPE 211 (213)
Q Consensus 199 ~Ii~~~~~~~~p~ 211 (213)
++++...+|+.++
T Consensus 161 ~~~l~~vLh~~~d 173 (241)
T PF00891_consen 161 VYLLRHVLHDWSD 173 (241)
T ss_dssp EEEEESSGGGS-H
T ss_pred ceeeehhhhhcch
Confidence 9999999999875
No 197
>KOG3010|consensus
Probab=98.32 E-value=8e-07 Score=70.57 Aligned_cols=84 Identities=18% Similarity=0.130 Sum_probs=56.7
Q ss_pred CCCCC-EEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcC
Q psy7826 120 LTEGK-KVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYD 198 (213)
Q Consensus 120 ~~~~~-~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD 198 (213)
..++. .++|+|||+|..+..+++.. .+|+|+|+|+.|++.+++.....-. ....++...+.....-.+++.|
T Consensus 30 ~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~----~t~~~ms~~~~v~L~g~e~SVD 102 (261)
T KOG3010|consen 30 RTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYC----HTPSTMSSDEMVDLLGGEESVD 102 (261)
T ss_pred hCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccc----cCCccccccccccccCCCccee
Confidence 33444 79999999998778888885 5899999999999999887432110 1112222222222222246899
Q ss_pred EEEEcCcCccCC
Q psy7826 199 IIHVGGSIEDIP 210 (213)
Q Consensus 199 ~Ii~~~~~~~~p 210 (213)
+|++..++|+..
T Consensus 103 lI~~Aqa~HWFd 114 (261)
T KOG3010|consen 103 LITAAQAVHWFD 114 (261)
T ss_pred eehhhhhHHhhc
Confidence 999998888753
No 198
>PRK10742 putative methyltransferase; Provisional
Probab=98.30 E-value=3.8e-06 Score=67.57 Aligned_cols=93 Identities=14% Similarity=0.159 Sum_probs=70.1
Q ss_pred HHHHHhhhCCCCC--EEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCC-CCccC---CCeEEEEc
Q psy7826 112 VLDDLSEELTEGK--KVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNP-EFVKD---GRIKFVLG 185 (213)
Q Consensus 112 ~~~~l~~~~~~~~--~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl-~~~~~---~~v~~~~~ 185 (213)
++..+ .++++. +|||+.+|+|..+..++.+ | ++|+++|.++......++++++... ..+.. .+++++.+
T Consensus 78 l~kAv--glk~g~~p~VLD~TAGlG~Da~~las~-G--~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 78 VAKAV--GIKGDYLPDVVDATAGLGRDAFVLASV-G--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred HHHHh--CCCCCCCCEEEECCCCccHHHHHHHHc-C--CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 44444 467777 8999999999999999988 5 6799999999999999999987410 00001 57899999
Q ss_pred CCCCCCC-CCCCcCEEEEcCcCccC
Q psy7826 186 DGRKGYL-DEAPYDIIHVGGSIEDI 209 (213)
Q Consensus 186 d~~~~~~-~~~~fD~Ii~~~~~~~~ 209 (213)
|...... ...+||+|++|...++-
T Consensus 153 da~~~L~~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 153 SSLTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_pred cHHHHHhhCCCCCcEEEECCCCCCC
Confidence 9873222 12369999999887763
No 199
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.30 E-value=9.3e-06 Score=75.26 Aligned_cols=96 Identities=20% Similarity=0.164 Sum_probs=71.0
Q ss_pred cHHHHHHHHHHHhhhC-CCCCEEEEEcCCccHHHHHHHHHcC--------------------------------------
Q psy7826 105 APFQQAMVLDDLSEEL-TEGKKVLDIGSGNGYFTALLAWCVG-------------------------------------- 145 (213)
Q Consensus 105 ~~~~~~~~~~~l~~~~-~~~~~vLDiG~G~G~~t~~la~~~~-------------------------------------- 145 (213)
.+.+.+.++.+. .. .++..++|.+||+|.+....|....
T Consensus 174 ~etlAaa~l~~a--~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~ 251 (702)
T PRK11783 174 KENLAAAILLRS--GWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG 251 (702)
T ss_pred cHHHHHHHHHHc--CCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence 344455555443 33 5678999999999999987765310
Q ss_pred ---CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCC--CCCcCEEEEcCcC
Q psy7826 146 ---KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLD--EAPYDIIHVGGSI 206 (213)
Q Consensus 146 ---~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~--~~~fD~Ii~~~~~ 206 (213)
...+++|+|+++.+++.|++|+...|+ ...+.+.++|+...... .++||+|++|...
T Consensus 252 ~~~~~~~i~G~Did~~av~~A~~N~~~~g~----~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPY 313 (702)
T PRK11783 252 LAELPSKFYGSDIDPRVIQAARKNARRAGV----AELITFEVKDVADLKNPLPKGPTGLVISNPPY 313 (702)
T ss_pred ccccCceEEEEECCHHHHHHHHHHHHHcCC----CcceEEEeCChhhcccccccCCCCEEEECCCC
Confidence 113799999999999999999999996 45699999999753322 2469999999653
No 200
>KOG2899|consensus
Probab=98.30 E-value=2e-06 Score=68.34 Aligned_cols=50 Identities=32% Similarity=0.546 Sum_probs=43.9
Q ss_pred hCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhh
Q psy7826 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS 169 (213)
Q Consensus 119 ~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~ 169 (213)
....+..+|||||-+|.+|..+|+.+++. .|+|+||++..++.|+++++.
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r-~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPR-RILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccc-eeeEeeccHHHHHHHHHhccc
Confidence 34456789999999999999999999764 899999999999999999753
No 201
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.28 E-value=8.6e-06 Score=73.12 Aligned_cols=106 Identities=16% Similarity=0.113 Sum_probs=73.5
Q ss_pred CCCccCcHHHHHHHHHHHhhhCC-----CCCEEEEEcCCccHHHHHHHHHcCC-------CCEEEEEeCChHHHHHHHHH
Q psy7826 99 YGAHMQAPFQQAMVLDDLSEELT-----EGKKVLDIGSGNGYFTALLAWCVGK-------TGKVIGIEHIPQLVQRATHN 166 (213)
Q Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~~-----~~~~vLDiG~G~G~~t~~la~~~~~-------~~~v~gvD~s~~~l~~a~~~ 166 (213)
.|++.+.+.+...+++.+..... ...+|||.|||+|.+...+++.+.. ...++|+|+++..++.++.+
T Consensus 3 ~GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 3 YGTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred CcccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 45666677777778777642211 3458999999999999998877521 24789999999999999999
Q ss_pred HhhCCCCCccCCCeEEEEcCCCCC----C-CCCCCcCEEEEcCcCccC
Q psy7826 167 VISGNPEFVKDGRIKFVLGDGRKG----Y-LDEAPYDIIHVGGSIEDI 209 (213)
Q Consensus 167 ~~~~gl~~~~~~~v~~~~~d~~~~----~-~~~~~fD~Ii~~~~~~~~ 209 (213)
+...+ ...+.+.+.|.... . ...+.||+|+.|.....+
T Consensus 83 l~~~~-----~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~ 125 (524)
T TIGR02987 83 LGEFA-----LLEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRL 125 (524)
T ss_pred HhhcC-----CCCceeeecccccccccccccccCcccEEEeCCCcccc
Confidence 87654 22345555554311 1 112479999999876543
No 202
>KOG2198|consensus
Probab=98.26 E-value=4.2e-06 Score=70.39 Aligned_cols=92 Identities=21% Similarity=0.161 Sum_probs=67.5
Q ss_pred HHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCC---CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCC
Q psy7826 112 VLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGK---TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR 188 (213)
Q Consensus 112 ~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~---~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~ 188 (213)
++-.+...++|+++|||+|+++|++|..+.+.+-+ ++.|++-|.+..++....+.+.+.. .++..+...|+.
T Consensus 145 mlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-----~~~~~v~~~~~~ 219 (375)
T KOG2198|consen 145 MLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-----SPNLLVTNHDAS 219 (375)
T ss_pred ccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-----Ccceeeecccce
Confidence 33333336899999999999999999999887532 3589999999999999999887765 455555555554
Q ss_pred CC-------CC--CCCCcCEEEEcCcCcc
Q psy7826 189 KG-------YL--DEAPYDIIHVGGSIED 208 (213)
Q Consensus 189 ~~-------~~--~~~~fD~Ii~~~~~~~ 208 (213)
.. .. +...||.|+++..+.+
T Consensus 220 ~~p~~~~~~~~~~~~~~fDrVLvDVPCS~ 248 (375)
T KOG2198|consen 220 LFPNIYLKDGNDKEQLKFDRVLVDVPCSG 248 (375)
T ss_pred eccccccccCchhhhhhcceeEEecccCC
Confidence 11 11 2236999999987653
No 203
>PLN02823 spermine synthase
Probab=98.26 E-value=7.2e-06 Score=69.39 Aligned_cols=82 Identities=18% Similarity=0.248 Sum_probs=63.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC-CCCCcCEE
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-DEAPYDII 200 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~-~~~~fD~I 200 (213)
...+||.+|+|.|+.+..+++.. +..+++.+|+++..++.+++.+...+ ..++.++++++.+|+..... ..++||+|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~-~~~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNR-EAFCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhccccc-ccccCCceEEEEChhHHHHhhCCCCccEE
Confidence 45689999999999999988863 44689999999999999999875431 01124789999999974322 23579999
Q ss_pred EEcCc
Q psy7826 201 HVGGS 205 (213)
Q Consensus 201 i~~~~ 205 (213)
+++..
T Consensus 181 i~D~~ 185 (336)
T PLN02823 181 IGDLA 185 (336)
T ss_pred EecCC
Confidence 99963
No 204
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.25 E-value=5.4e-06 Score=70.02 Aligned_cols=86 Identities=15% Similarity=0.115 Sum_probs=56.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCC---C-Cc-cCCCeEEEEcCCCC-----CC
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNP---E-FV-KDGRIKFVLGDGRK-----GY 191 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl---~-~~-~~~~v~~~~~d~~~-----~~ 191 (213)
++.+|||+|||-|+...-.... + -..++|+|++...++.|+++.+...- + .. ..-...++.+|... .+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-K-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc-C-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 7789999999999977666654 2 36999999999999999998832110 0 00 01246788898862 22
Q ss_pred CC-CCCcCEEEEcCcCccC
Q psy7826 192 LD-EAPYDIIHVGGSIEDI 209 (213)
Q Consensus 192 ~~-~~~fD~Ii~~~~~~~~ 209 (213)
.+ ..+||+|=+-+++|+.
T Consensus 140 ~~~~~~FDvVScQFalHY~ 158 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYA 158 (331)
T ss_dssp SSTTS-EEEEEEES-GGGG
T ss_pred cccCCCcceeehHHHHHHh
Confidence 22 2589999999999874
No 205
>KOG2360|consensus
Probab=98.23 E-value=3.7e-06 Score=70.91 Aligned_cols=150 Identities=14% Similarity=0.061 Sum_probs=98.0
Q ss_pred cccCCCCchhHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCC-CC----C---CC---CCCCccccCCCCccCcHHHHHHH
Q psy7826 44 HKGTKMEKKPMEYLVEHLKETLFIESELPYKAMLAVDRGHY-TT----W---RP---YANCITNIGYGAHMQAPFQQAMV 112 (213)
Q Consensus 44 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~-~~----~---~~---~~~~~~~~~~~~~~~~~~~~~~~ 112 (213)
..|+|+.+.+.++.+..|...+. . ...++....| .. . .. +.....-...|..+.+....=..
T Consensus 133 ~vRINtlk~~~~e~~~~L~~e~~------~-~~~~l~p~~~~~D~~~~~ll~~~~~n~i~~~~ly~~g~~ilqd~asclp 205 (413)
T KOG2360|consen 133 YVRINTLKGTTDEALDYLDYEKW------K-MITELKPDEFYVDPHVENLIIFPPSNFIVEHELYKNGKFILQDKASCLP 205 (413)
T ss_pred eEEeecccCchhhhhhhhhhhhh------h-hhhhcCCcceeccccchhhcccCCCcceeeccccccCceEEechhhcch
Confidence 77899988777777777765442 1 1111111111 11 0 00 00000012235556665554444
Q ss_pred HHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC-
Q psy7826 113 LDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY- 191 (213)
Q Consensus 113 ~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~- 191 (213)
...+ .+.+|..|+|.||.+|-+|.++|..+.+.++++|+|.++.+.+..++.+...| ...++...+|+....
T Consensus 206 A~ll--~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag-----~~~~~~~~~df~~t~~ 278 (413)
T KOG2360|consen 206 AHLL--DPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAG-----VSIVESVEGDFLNTAT 278 (413)
T ss_pred hhhc--CCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcC-----CCccccccccccCCCC
Confidence 5555 57788999999999999999999999778999999999999999999999888 677888899987531
Q ss_pred C-CCCCcCEEEEcCcCc
Q psy7826 192 L-DEAPYDIIHVGGSIE 207 (213)
Q Consensus 192 ~-~~~~fD~Ii~~~~~~ 207 (213)
+ .-...-.|+++.++.
T Consensus 279 ~~~~~~v~~iL~DpscS 295 (413)
T KOG2360|consen 279 PEKFRDVTYILVDPSCS 295 (413)
T ss_pred cccccceeEEEeCCCCC
Confidence 1 112345667766553
No 206
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.21 E-value=1.1e-05 Score=63.41 Aligned_cols=81 Identities=28% Similarity=0.414 Sum_probs=70.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCE
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDI 199 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~ 199 (213)
++.+.++.|+||--+|+..++.+. ++...+++.|+++..++.|.+++.+.++ .+.++...+|....+..+..+|+
T Consensus 14 V~~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l----~~~i~vr~~dgl~~l~~~d~~d~ 88 (226)
T COG2384 14 VKQGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNL----SERIDVRLGDGLAVLELEDEIDV 88 (226)
T ss_pred HHcCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCC----cceEEEeccCCccccCccCCcCE
Confidence 456667999999999999999998 5767999999999999999999999997 78999999999866655557999
Q ss_pred EEEcCc
Q psy7826 200 IHVGGS 205 (213)
Q Consensus 200 Ii~~~~ 205 (213)
|+..+.
T Consensus 89 ivIAGM 94 (226)
T COG2384 89 IVIAGM 94 (226)
T ss_pred EEEeCC
Confidence 887664
No 207
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.20 E-value=7.9e-06 Score=68.60 Aligned_cols=72 Identities=21% Similarity=0.306 Sum_probs=54.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCE
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDI 199 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~ 199 (213)
+.+|.++||+||+||++|..++++ | .+|+|||..+ + ...+.. .++|..+.+|.....+...++|.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r-G--~~V~AVD~g~-l----~~~L~~-------~~~V~h~~~d~fr~~p~~~~vDw 273 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR-G--MFVTAVDNGP-M----AQSLMD-------TGQVEHLRADGFKFRPPRKNVDW 273 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc-C--CEEEEEechh-c----CHhhhC-------CCCEEEEeccCcccCCCCCCCCE
Confidence 357899999999999999999987 4 5999999543 1 122222 46899999998754443468999
Q ss_pred EEEcCcC
Q psy7826 200 IHVGGSI 206 (213)
Q Consensus 200 Ii~~~~~ 206 (213)
+++|.+.
T Consensus 274 vVcDmve 280 (357)
T PRK11760 274 LVCDMVE 280 (357)
T ss_pred EEEeccc
Confidence 9999763
No 208
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.19 E-value=3.8e-06 Score=72.06 Aligned_cols=76 Identities=16% Similarity=0.128 Sum_probs=63.1
Q ss_pred CEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCC-CCCcCEEEE
Q psy7826 124 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLD-EAPYDIIHV 202 (213)
Q Consensus 124 ~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~ 202 (213)
.+|||+.||+|..+..++...+.-.+|+++|+++.+++.+++|++.++ ..++++.++|+...... ..+||+|++
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~-----~~~~~v~~~Da~~~l~~~~~~fDvIdl 120 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS-----VENIEVPNEDAANVLRYRNRKFHVIDI 120 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEchhHHHHHHHhCCCCCEEEe
Confidence 589999999999999999874223589999999999999999999887 46789999998743321 246999999
Q ss_pred cC
Q psy7826 203 GG 204 (213)
Q Consensus 203 ~~ 204 (213)
|.
T Consensus 121 DP 122 (374)
T TIGR00308 121 DP 122 (374)
T ss_pred CC
Confidence 86
No 209
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.18 E-value=1.4e-05 Score=59.36 Aligned_cols=82 Identities=27% Similarity=0.400 Sum_probs=57.3
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHc---CCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCc
Q psy7826 121 TEGKKVLDIGSGNGYFTALLAWCV---GKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPY 197 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la~~~---~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~f 197 (213)
.+...|+|+|||-|+++..++..+ .+..+|+++|.++..++.+++..++.+... ..++++..++...... ....
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~ 100 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDL--EKRLSFIQGDIADESS-SDPP 100 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchh--hccchhhccchhhhcc-cCCC
Confidence 567799999999999999999943 245699999999999999999988766200 2356666665543211 2345
Q ss_pred CEEEEcCc
Q psy7826 198 DIIHVGGS 205 (213)
Q Consensus 198 D~Ii~~~~ 205 (213)
++++.--+
T Consensus 101 ~~~vgLHa 108 (141)
T PF13679_consen 101 DILVGLHA 108 (141)
T ss_pred eEEEEeec
Confidence 55554333
No 210
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.18 E-value=3.9e-06 Score=64.39 Aligned_cols=69 Identities=26% Similarity=0.416 Sum_probs=58.6
Q ss_pred CEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEEE
Q psy7826 124 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHV 202 (213)
Q Consensus 124 ~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~ 202 (213)
+.+.|+|+|+|.++...++.. .+|+++|.++...+.|.+|+.-.| ..|++++.+|+...... .-|+|++
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~g-----~~n~evv~gDA~~y~fe--~ADvvic 102 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVPG-----DVNWEVVVGDARDYDFE--NADVVIC 102 (252)
T ss_pred hceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCCC-----CcceEEEeccccccccc--ccceeHH
Confidence 689999999999999888874 599999999999999999987777 68999999999854332 4588765
No 211
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.17 E-value=1e-05 Score=72.27 Aligned_cols=81 Identities=19% Similarity=-0.014 Sum_probs=66.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCC--CCCCCCCCcCE
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR--KGYLDEAPYDI 199 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~--~~~~~~~~fD~ 199 (213)
.+..+||+|||.|.++..+|... |+..++|+|++...+..+.+...+.+ ..|+.++..|+. ....+.+++|.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~-----l~N~~~~~~~~~~~~~~~~~~sv~~ 420 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQN-----ITNFLLFPNNLDLILNDLPNNSLDG 420 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcC-----CCeEEEEcCCHHHHHHhcCcccccE
Confidence 45679999999999999999994 88899999999999999999988888 579999988874 11223468999
Q ss_pred EEEcCcCcc
Q psy7826 200 IHVGGSIED 208 (213)
Q Consensus 200 Ii~~~~~~~ 208 (213)
|++++.-++
T Consensus 421 i~i~FPDPW 429 (506)
T PRK01544 421 IYILFPDPW 429 (506)
T ss_pred EEEECCCCC
Confidence 999875444
No 212
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.16 E-value=2.7e-05 Score=61.51 Aligned_cols=81 Identities=22% Similarity=0.253 Sum_probs=61.7
Q ss_pred hCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC---CCCC
Q psy7826 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY---LDEA 195 (213)
Q Consensus 119 ~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~---~~~~ 195 (213)
.+++|.+||-+|+++|..-.+++..++++|.|++||.|+...+..-..+++ -+||-.+.+|+..+. .--+
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-------R~NIiPIl~DAr~P~~Y~~lv~ 142 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-------RPNIIPILEDARHPEKYRMLVE 142 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-------STTEEEEES-TTSGGGGTTTS-
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-------CCceeeeeccCCChHHhhcccc
Confidence 467899999999999999999999998899999999999887777666655 468999999998432 1134
Q ss_pred CcCEEEEcCcC
Q psy7826 196 PYDIIHVGGSI 206 (213)
Q Consensus 196 ~fD~Ii~~~~~ 206 (213)
.+|+|+.+.+-
T Consensus 143 ~VDvI~~DVaQ 153 (229)
T PF01269_consen 143 MVDVIFQDVAQ 153 (229)
T ss_dssp -EEEEEEE-SS
T ss_pred cccEEEecCCC
Confidence 79999999763
No 213
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.16 E-value=1.3e-05 Score=62.24 Aligned_cols=74 Identities=23% Similarity=0.244 Sum_probs=62.5
Q ss_pred EEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEEEcC
Q psy7826 125 KVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGG 204 (213)
Q Consensus 125 ~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~ 204 (213)
+++|+|+|.|.-+..+|-.. |+.+++.+|.....+...+.....+| ..|++++++.+++ .....+||+|++-+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~-----L~nv~v~~~R~E~-~~~~~~fd~v~aRA 123 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELG-----LSNVEVINGRAEE-PEYRESFDVVTARA 123 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT------SSEEEEES-HHH-TTTTT-EEEEEEES
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhC-----CCCEEEEEeeecc-cccCCCccEEEeeh
Confidence 89999999999999999885 88899999999999999999999999 5789999999887 22345899999876
Q ss_pred c
Q psy7826 205 S 205 (213)
Q Consensus 205 ~ 205 (213)
.
T Consensus 124 v 124 (184)
T PF02527_consen 124 V 124 (184)
T ss_dssp S
T ss_pred h
Confidence 5
No 214
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.08 E-value=1.7e-05 Score=62.03 Aligned_cols=93 Identities=16% Similarity=0.152 Sum_probs=66.3
Q ss_pred HHHHHhhhCCCCC-EEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCe-EEEEcCCCC
Q psy7826 112 VLDDLSEELTEGK-KVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRI-KFVLGDGRK 189 (213)
Q Consensus 112 ~~~~l~~~~~~~~-~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v-~~~~~d~~~ 189 (213)
+++.|...+.+.. +|||||||||-.+.++|+.+ |.....--|.++..+...+......++ +|+ .-+..|+..
T Consensus 14 Il~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~-----~Nv~~P~~lDv~~ 87 (204)
T PF06080_consen 14 ILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGL-----PNVRPPLALDVSA 87 (204)
T ss_pred HHHHHHHHhCccCceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCC-----cccCCCeEeecCC
Confidence 3344433344444 59999999999999999998 777888889999998888887777663 343 344556653
Q ss_pred C-CC-------CCCCcCEEEEcCcCccCC
Q psy7826 190 G-YL-------DEAPYDIIHVGGSIEDIP 210 (213)
Q Consensus 190 ~-~~-------~~~~fD~Ii~~~~~~~~p 210 (213)
. ++ ...+||.|++.-.+|=+|
T Consensus 88 ~~w~~~~~~~~~~~~~D~i~~~N~lHI~p 116 (204)
T PF06080_consen 88 PPWPWELPAPLSPESFDAIFCINMLHISP 116 (204)
T ss_pred CCCccccccccCCCCcceeeehhHHHhcC
Confidence 3 22 134799999988877655
No 215
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.02 E-value=6.3e-05 Score=61.92 Aligned_cols=94 Identities=20% Similarity=0.185 Sum_probs=77.2
Q ss_pred HHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCC
Q psy7826 108 QQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDG 187 (213)
Q Consensus 108 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~ 187 (213)
+...+++.| .+.++...+|.--|.|+.|..+.+.+++.++++|+|.++.+++.|++.+..++ .++.+++++.
T Consensus 11 Ll~E~i~~L--~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~------~r~~~v~~~F 82 (314)
T COG0275 11 LLNEVVELL--APKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD------GRVTLVHGNF 82 (314)
T ss_pred HHHHHHHhc--ccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC------CcEEEEeCcH
Confidence 445677777 47888999999999999999999998767889999999999999999998764 5899999987
Q ss_pred CCC---C--CCCCCcCEEEEcCcCccC
Q psy7826 188 RKG---Y--LDEAPYDIIHVGGSIEDI 209 (213)
Q Consensus 188 ~~~---~--~~~~~fD~Ii~~~~~~~~ 209 (213)
... . .....+|-|++|.++..+
T Consensus 83 ~~l~~~l~~~~i~~vDGiL~DLGVSS~ 109 (314)
T COG0275 83 ANLAEALKELGIGKVDGILLDLGVSSP 109 (314)
T ss_pred HHHHHHHHhcCCCceeEEEEeccCCcc
Confidence 521 1 123579999999887654
No 216
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.01 E-value=3.5e-06 Score=65.06 Aligned_cols=70 Identities=23% Similarity=0.375 Sum_probs=45.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCC--------CCC
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKG--------YLD 193 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~--------~~~ 193 (213)
++.+|||+||+||++|..++++.++.++|+|+|+.+. . . .+++.++++|.... ...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~--~-----~~~~~~i~~d~~~~~~~~~i~~~~~ 86 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------D--P-----LQNVSFIQGDITNPENIKDIRKLLP 86 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------G--S------TTEEBTTGGGEEEEHSHHGGGSHG
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc---------c--c-----ccceeeeecccchhhHHHhhhhhcc
Confidence 3479999999999999999998545689999999875 1 1 24566666665411 111
Q ss_pred --CCCcCEEEEcCcCc
Q psy7826 194 --EAPYDIIHVGGSIE 207 (213)
Q Consensus 194 --~~~fD~Ii~~~~~~ 207 (213)
..+||+|++|.++.
T Consensus 87 ~~~~~~dlv~~D~~~~ 102 (181)
T PF01728_consen 87 ESGEKFDLVLSDMAPN 102 (181)
T ss_dssp TTTCSESEEEE-----
T ss_pred ccccCcceeccccccC
Confidence 25799999999543
No 217
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.98 E-value=2.9e-05 Score=61.42 Aligned_cols=76 Identities=24% Similarity=0.225 Sum_probs=65.1
Q ss_pred CCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCC-cCEEE
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAP-YDIIH 201 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~-fD~Ii 201 (213)
+.+++|+|+|.|.-+..+|-. .|+.+++-+|....++...+.....++ .+|++++++.+++.... .. ||+|.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~-~p~~~vtLles~~Kk~~FL~~~~~eL~-----L~nv~i~~~RaE~~~~~-~~~~D~vt 140 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIA-FPDLKVTLLESLGKKIAFLREVKKELG-----LENVEIVHGRAEEFGQE-KKQYDVVT 140 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHh-ccCCcEEEEccCchHHHHHHHHHHHhC-----CCCeEEehhhHhhcccc-cccCcEEE
Confidence 579999999999999999965 477889999999999999999999998 58999999999864432 24 99999
Q ss_pred EcCc
Q psy7826 202 VGGS 205 (213)
Q Consensus 202 ~~~~ 205 (213)
+-+.
T Consensus 141 sRAv 144 (215)
T COG0357 141 SRAV 144 (215)
T ss_pred eehc
Confidence 8664
No 218
>KOG2361|consensus
Probab=97.93 E-value=9.6e-06 Score=64.53 Aligned_cols=80 Identities=19% Similarity=0.182 Sum_probs=63.3
Q ss_pred EEEEEcCCccHHHHHHHHHcCCC--CEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCC----CCCCCCCcC
Q psy7826 125 KVLDIGSGNGYFTALLAWCVGKT--GKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK----GYLDEAPYD 198 (213)
Q Consensus 125 ~vLDiG~G~G~~t~~la~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~----~~~~~~~fD 198 (213)
+|||+|||.|.....+.+.. ++ -+|+++|.|+.+++..+++.... ..++..-+.|+.. ..+..+++|
T Consensus 74 ~ilEvGCGvGNtvfPll~~~-~n~~l~v~acDfsp~Ai~~vk~~~~~~------e~~~~afv~Dlt~~~~~~~~~~~svD 146 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTS-PNNRLKVYACDFSPRAIELVKKSSGYD------ESRVEAFVWDLTSPSLKEPPEEGSVD 146 (264)
T ss_pred hheeeccCCCcccchhhhcC-CCCCeEEEEcCCChHHHHHHHhccccc------hhhhcccceeccchhccCCCCcCccc
Confidence 79999999999999988874 55 68999999999999999986543 2456666667652 223456899
Q ss_pred EEEEcCcCccCCC
Q psy7826 199 IIHVGGSIEDIPE 211 (213)
Q Consensus 199 ~Ii~~~~~~~~p~ 211 (213)
.|.+.+++..+++
T Consensus 147 ~it~IFvLSAi~p 159 (264)
T KOG2361|consen 147 IITLIFVLSAIHP 159 (264)
T ss_pred eEEEEEEEeccCh
Confidence 9999999888775
No 219
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.92 E-value=2.8e-05 Score=64.80 Aligned_cols=92 Identities=21% Similarity=0.229 Sum_probs=64.6
Q ss_pred HHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCC
Q psy7826 108 QQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDG 187 (213)
Q Consensus 108 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~ 187 (213)
+...+++.+ .+.++..++|.--|.|+.|..+++.++ .++++|+|.++.+++.+++++...+ +++.++.++.
T Consensus 8 ll~Evl~~L--~~~~~g~~vD~T~G~GGHS~aiL~~~~-~~~li~~DrD~~a~~~a~~~l~~~~------~r~~~~~~~F 78 (310)
T PF01795_consen 8 LLKEVLEAL--NPKPGGIYVDCTFGGGGHSKAILEKLP-NGRLIGIDRDPEALERAKERLKKFD------DRFIFIHGNF 78 (310)
T ss_dssp THHHHHHHH--T--TT-EEEETT-TTSHHHHHHHHT-T-T-EEEEEES-HHHHHHHHCCTCCCC------TTEEEEES-G
T ss_pred cHHHHHHhh--CcCCCceEEeecCCcHHHHHHHHHhCC-CCeEEEecCCHHHHHHHHHHHhhcc------ceEEEEeccH
Confidence 446677778 478888999999999999999999874 4999999999999999999887653 6899999987
Q ss_pred CCC------CCCCCCcCEEEEcCcCcc
Q psy7826 188 RKG------YLDEAPYDIIHVGGSIED 208 (213)
Q Consensus 188 ~~~------~~~~~~fD~Ii~~~~~~~ 208 (213)
.+. ......+|.|++|.++..
T Consensus 79 ~~l~~~l~~~~~~~~~dgiL~DLGvSS 105 (310)
T PF01795_consen 79 SNLDEYLKELNGINKVDGILFDLGVSS 105 (310)
T ss_dssp GGHHHHHHHTTTTS-EEEEEEE-S--H
T ss_pred HHHHHHHHHccCCCccCEEEEccccCH
Confidence 621 112247999999987654
No 220
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.92 E-value=6.2e-05 Score=62.16 Aligned_cols=85 Identities=22% Similarity=0.281 Sum_probs=66.6
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCC-CCCcC
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLD-EAPYD 198 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~-~~~fD 198 (213)
..+ ++||-+|-|.|+.++.+++.. +-.+++.||+++..++.+++.+....-... .++++++.+|+...... ..+||
T Consensus 75 ~~p-k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~-dpRv~i~i~Dg~~~v~~~~~~fD 151 (282)
T COG0421 75 PNP-KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGAD-DPRVEIIIDDGVEFLRDCEEKFD 151 (282)
T ss_pred CCC-CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccC-CCceEEEeccHHHHHHhCCCcCC
Confidence 344 599999999999999999984 556999999999999999999865431111 37899999999743332 23799
Q ss_pred EEEEcCcCc
Q psy7826 199 IIHVGGSIE 207 (213)
Q Consensus 199 ~Ii~~~~~~ 207 (213)
+|+++..-.
T Consensus 152 vIi~D~tdp 160 (282)
T COG0421 152 VIIVDSTDP 160 (282)
T ss_pred EEEEcCCCC
Confidence 999998755
No 221
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.91 E-value=4.6e-05 Score=62.88 Aligned_cols=85 Identities=16% Similarity=0.238 Sum_probs=57.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEE
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIH 201 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii 201 (213)
...+|||+|||+|..+-...+.++...+++++|.|+.+++.++..+..... .....+ ..+......+..+.|+|+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~----~~~~~~-~~~~~~~~~~~~~~DLvi 107 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN----NRNAEW-RRVLYRDFLPFPPDDLVI 107 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc----cccchh-hhhhhcccccCCCCcEEE
Confidence 345899999999988777777765345899999999999999988765331 111111 111111111122359999
Q ss_pred EcCcCccCCC
Q psy7826 202 VGGSIEDIPE 211 (213)
Q Consensus 202 ~~~~~~~~p~ 211 (213)
+..++..+++
T Consensus 108 ~s~~L~EL~~ 117 (274)
T PF09243_consen 108 ASYVLNELPS 117 (274)
T ss_pred EehhhhcCCc
Confidence 9999988875
No 222
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.89 E-value=9.2e-06 Score=64.39 Aligned_cols=80 Identities=29% Similarity=0.350 Sum_probs=62.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCC--CCCCCCc
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKG--YLDEAPY 197 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~--~~~~~~f 197 (213)
++.|.+|||.|.|-||.++..+++ |. .+|+.+|.+++.++.|.-|-=..++ ....++++.||+.+. ..++.+|
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~r-GA-~~VitvEkdp~VLeLa~lNPwSr~l---~~~~i~iilGD~~e~V~~~~D~sf 206 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALER-GA-IHVITVEKDPNVLELAKLNPWSREL---FEIAIKIILGDAYEVVKDFDDESF 206 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHc-CC-cEEEEEeeCCCeEEeeccCCCCccc---cccccEEecccHHHHHhcCCcccc
Confidence 567999999999999999998887 52 3999999999999999877432232 123689999998732 2345689
Q ss_pred CEEEEcC
Q psy7826 198 DIIHVGG 204 (213)
Q Consensus 198 D~Ii~~~ 204 (213)
|+|+-+.
T Consensus 207 DaIiHDP 213 (287)
T COG2521 207 DAIIHDP 213 (287)
T ss_pred ceEeeCC
Confidence 9999774
No 223
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.88 E-value=2e-05 Score=62.05 Aligned_cols=82 Identities=21% Similarity=0.203 Sum_probs=54.9
Q ss_pred CCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEEE
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHV 202 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~ 202 (213)
..+.||+|||.|..|..+...+ -.+|..+|..+..++.|++.+...+ .....+.+.-+.+..|+..+||+|++
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~-----~~v~~~~~~gLQ~f~P~~~~YDlIW~ 128 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDN-----PRVGEFYCVGLQDFTPEEGKYDLIWI 128 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGG-----CCEEEEEES-GGG----TT-EEEEEE
T ss_pred cceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccC-----CCcceEEecCHhhccCCCCcEeEEEe
Confidence 4689999999999998765432 2589999999999999998875422 12346666666654455568999999
Q ss_pred cCcCccCCC
Q psy7826 203 GGSIEDIPE 211 (213)
Q Consensus 203 ~~~~~~~p~ 211 (213)
-.++.|+.|
T Consensus 129 QW~lghLTD 137 (218)
T PF05891_consen 129 QWCLGHLTD 137 (218)
T ss_dssp ES-GGGS-H
T ss_pred hHhhccCCH
Confidence 999999875
No 224
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.85 E-value=0.00043 Score=56.87 Aligned_cols=86 Identities=16% Similarity=0.209 Sum_probs=68.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCC--CCC-CCCc
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKG--YLD-EAPY 197 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~--~~~-~~~f 197 (213)
..-+|||++||.|.+-.......+. ..+|.-.|.|+..++..++.++..|+ .+-++|.++|+.+. ... ...+
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL----~~i~~f~~~dAfd~~~l~~l~p~P 210 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL----EDIARFEQGDAFDRDSLAALDPAP 210 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC----ccceEEEecCCCCHhHhhccCCCC
Confidence 3458999999999998888777532 25888899999999999999999995 33459999999842 111 2357
Q ss_pred CEEEEcCcCccCCC
Q psy7826 198 DIIHVGGSIEDIPE 211 (213)
Q Consensus 198 D~Ii~~~~~~~~p~ 211 (213)
+++++++-.+.+||
T Consensus 211 ~l~iVsGL~ElF~D 224 (311)
T PF12147_consen 211 TLAIVSGLYELFPD 224 (311)
T ss_pred CEEEEecchhhCCc
Confidence 99999999998887
No 225
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.85 E-value=2.7e-05 Score=60.18 Aligned_cols=76 Identities=26% Similarity=0.395 Sum_probs=62.8
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEE
Q psy7826 121 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 200 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~I 200 (213)
-.|++|||+|+|+|..+...++. |. ..|++.|+.+.....++-|.+.+|. +|.+...|... ++..||+|
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~a-GA-~~v~a~d~~P~~~~ai~lNa~angv------~i~~~~~d~~g---~~~~~Dl~ 146 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARA-GA-AEVVAADIDPWLEQAIRLNAAANGV------SILFTHADLIG---SPPAFDLL 146 (218)
T ss_pred cccceeeecccccChHHHHHHHh-hh-HHHHhcCCChHHHHHhhcchhhccc------eeEEeeccccC---CCcceeEE
Confidence 36889999999999999888776 43 4899999999999999999999883 78898888754 23469999
Q ss_pred EEcCcCc
Q psy7826 201 HVGGSIE 207 (213)
Q Consensus 201 i~~~~~~ 207 (213)
+.+..+-
T Consensus 147 LagDlfy 153 (218)
T COG3897 147 LAGDLFY 153 (218)
T ss_pred Eeeceec
Confidence 9887643
No 226
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.84 E-value=0.00019 Score=60.32 Aligned_cols=88 Identities=18% Similarity=0.234 Sum_probs=61.8
Q ss_pred hCCCCCEEEEEcCCccHHHHHHHHHcCC---CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEE--EEcCCCCC---
Q psy7826 119 ELTEGKKVLDIGSGNGYFTALLAWCVGK---TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKF--VLGDGRKG--- 190 (213)
Q Consensus 119 ~~~~~~~vLDiG~G~G~~t~~la~~~~~---~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~--~~~d~~~~--- 190 (213)
.+.++..++|+|||.|.++..|.+.+.+ ...++++|+|.++++.+.+++.... .+.+++ +++|...+
T Consensus 73 ~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~-----~p~l~v~~l~gdy~~~l~~ 147 (319)
T TIGR03439 73 SIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN-----FSHVRCAGLLGTYDDGLAW 147 (319)
T ss_pred hcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc-----CCCeEEEEEEecHHHHHhh
Confidence 4567778999999999999998887632 2479999999999999999987322 355554 78887632
Q ss_pred CCC---CCCcCEEEEc-CcCccCCC
Q psy7826 191 YLD---EAPYDIIHVG-GSIEDIPE 211 (213)
Q Consensus 191 ~~~---~~~fD~Ii~~-~~~~~~p~ 211 (213)
.+. .....+++.- .++.++++
T Consensus 148 l~~~~~~~~~r~~~flGSsiGNf~~ 172 (319)
T TIGR03439 148 LKRPENRSRPTTILWLGSSIGNFSR 172 (319)
T ss_pred cccccccCCccEEEEeCccccCCCH
Confidence 111 1234555544 46777654
No 227
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.82 E-value=5.7e-05 Score=61.35 Aligned_cols=84 Identities=27% Similarity=0.351 Sum_probs=61.2
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCC-CC-CcC
Q psy7826 121 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLD-EA-PYD 198 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~-~~-~fD 198 (213)
...++||=+|-|.|..+..+.+. .+..+++.+|+++..++.+++.+...... ...++++++.+|+...... .. +||
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~-~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~-~~d~r~~i~~~Dg~~~l~~~~~~~yD 152 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKH-PPVESITVVEIDPEVVELARKYFPEFSEG-LDDPRVRIIIGDGRKFLKETQEEKYD 152 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTS-TT-SEEEEEES-HHHHHHHHHHTHHHHTT-GGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred CCcCceEEEcCCChhhhhhhhhc-CCcceEEEEecChHHHHHHHHhchhhccc-cCCCceEEEEhhhHHHHHhccCCccc
Confidence 45679999999999999999887 34469999999999999999987542210 1246899999998632211 23 799
Q ss_pred EEEEcCcC
Q psy7826 199 IIHVGGSI 206 (213)
Q Consensus 199 ~Ii~~~~~ 206 (213)
+|+++..-
T Consensus 153 vIi~D~~d 160 (246)
T PF01564_consen 153 VIIVDLTD 160 (246)
T ss_dssp EEEEESSS
T ss_pred EEEEeCCC
Confidence 99998765
No 228
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.81 E-value=4.3e-05 Score=57.92 Aligned_cols=60 Identities=13% Similarity=0.252 Sum_probs=45.5
Q ss_pred EEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEEEcCcCccCCCC
Q psy7826 151 IGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEG 212 (213)
Q Consensus 151 ~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~p~~ 212 (213)
+|+|+|++|++.|+++....+.. ...+++++++|+.....++++||+|++..+++++++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~--~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~ 60 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS--CYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR 60 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc--CCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH
Confidence 48999999999998776432100 0347999999998654455689999999999998763
No 229
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.78 E-value=0.00015 Score=57.24 Aligned_cols=95 Identities=25% Similarity=0.341 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHH-------hhCCCCCccCC
Q psy7826 106 PFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNV-------ISGNPEFVKDG 178 (213)
Q Consensus 106 ~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~-------~~~gl~~~~~~ 178 (213)
+.....+++.+ .+.+++..+|+|||.|-.....|-.. +-.+.+|+|+.+...+.|+... +.+|. ...
T Consensus 28 ~~~~~~il~~~--~l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~---~~~ 101 (205)
T PF08123_consen 28 PEFVSKILDEL--NLTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGK---RPG 101 (205)
T ss_dssp HHHHHHHHHHT--T--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB------
T ss_pred HHHHHHHHHHh--CCCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc---ccc
Confidence 34445567766 57889999999999999988888765 3346999999999988777543 23442 134
Q ss_pred CeEEEEcCCCCCCC-C--CCCcCEEEEcCcC
Q psy7826 179 RIKFVLGDGRKGYL-D--EAPYDIIHVGGSI 206 (213)
Q Consensus 179 ~v~~~~~d~~~~~~-~--~~~fD~Ii~~~~~ 206 (213)
++++..+|+.+... . -..-|+|+++..+
T Consensus 102 ~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~ 132 (205)
T PF08123_consen 102 KVELIHGDFLDPDFVKDIWSDADVVFVNNTC 132 (205)
T ss_dssp EEEEECS-TTTHHHHHHHGHC-SEEEE--TT
T ss_pred cceeeccCccccHhHhhhhcCCCEEEEeccc
Confidence 68888999864211 0 1235999998754
No 230
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.73 E-value=0.00022 Score=59.12 Aligned_cols=82 Identities=20% Similarity=0.206 Sum_probs=48.9
Q ss_pred CCEEEEEcCCccHHH-HHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhC-CCCCccCCCeEEEEcCCC----CCC-CCCC
Q psy7826 123 GKKVLDIGSGNGYFT-ALLAWCVGKTGKVIGIEHIPQLVQRATHNVISG-NPEFVKDGRIKFVLGDGR----KGY-LDEA 195 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t-~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-gl~~~~~~~v~~~~~d~~----~~~-~~~~ 195 (213)
.-++||||+|.-..= +.-++.. .-+++|.|+++..++.|+++++++ ++ ..+|+++...-. ... ....
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~--~W~fvaTdID~~sl~~A~~nv~~N~~L----~~~I~l~~~~~~~~i~~~i~~~~e 176 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY--GWSFVATDIDPKSLESARENVERNPNL----ESRIELRKQKNPDNIFDGIIQPNE 176 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-----TTTEEEEE--ST-SSTTTSTT--S
T ss_pred ceEeecCCccHHHHHHHHhhhhc--CCeEEEecCCHHHHHHHHHHHHhcccc----ccceEEEEcCCccccchhhhcccc
Confidence 457999999987654 3334443 479999999999999999999999 86 678988866432 111 1234
Q ss_pred CcCEEEEcCcCccCC
Q psy7826 196 PYDIIHVGGSIEDIP 210 (213)
Q Consensus 196 ~fD~Ii~~~~~~~~p 210 (213)
.||.++||.....-.
T Consensus 177 ~~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 177 RFDFTMCNPPFYSSQ 191 (299)
T ss_dssp -EEEEEE-----SS-
T ss_pred eeeEEecCCccccCh
Confidence 799999997665433
No 231
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.70 E-value=0.00034 Score=57.98 Aligned_cols=89 Identities=15% Similarity=0.156 Sum_probs=59.3
Q ss_pred CCEEEEEcCCccH----HHHHHHHHcCC---CCEEEEEeCChHHHHHHHHHH------h------------hC-----C-
Q psy7826 123 GKKVLDIGSGNGY----FTALLAWCVGK---TGKVIGIEHIPQLVQRATHNV------I------------SG-----N- 171 (213)
Q Consensus 123 ~~~vLDiG~G~G~----~t~~la~~~~~---~~~v~gvD~s~~~l~~a~~~~------~------------~~-----g- 171 (213)
.-+|+..||+||- ++..+.+..+. +.+|+|.|+|+.+++.|++.. + +. +
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 3699999999994 33444454321 358999999999999999752 0 00 0
Q ss_pred --CCCccCCCeEEEEcCCCCC-CCCCCCcCEEEEcCcCccCCC
Q psy7826 172 --PEFVKDGRIKFVLGDGRKG-YLDEAPYDIIHVGGSIEDIPE 211 (213)
Q Consensus 172 --l~~~~~~~v~~~~~d~~~~-~~~~~~fD~Ii~~~~~~~~p~ 211 (213)
+..---..|.|.+.|+... ++..+.||+|++-.++.++.+
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~ 238 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDK 238 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCH
Confidence 0000014578999999863 333468999999888777654
No 232
>KOG1975|consensus
Probab=97.66 E-value=9.5e-05 Score=61.32 Aligned_cols=87 Identities=22% Similarity=0.253 Sum_probs=61.6
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCcc-CCCeEEEEcCCC-----CCC-C
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVK-DGRIKFVLGDGR-----KGY-L 192 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~-~~~v~~~~~d~~-----~~~-~ 192 (213)
.++++.++|+|||-|+-.+-.-+. |- +.++|+||++..++.|+++.+...-+.-. .-.+.|+.+|.. +.. +
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kA-gI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~ 192 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKA-GI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF 192 (389)
T ss_pred hccccccceeccCCcccHhHhhhh-cc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence 577889999999999987666554 32 58999999999999999886533100000 124789999986 122 2
Q ss_pred CCCCcCEEEEcCcCcc
Q psy7826 193 DEAPYDIIHVGGSIED 208 (213)
Q Consensus 193 ~~~~fD~Ii~~~~~~~ 208 (213)
++.+||+|=+-+++|+
T Consensus 193 ~dp~fDivScQF~~HY 208 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAFHY 208 (389)
T ss_pred CCCCcceeeeeeeEee
Confidence 2334999998888765
No 233
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.63 E-value=0.00041 Score=61.77 Aligned_cols=101 Identities=16% Similarity=0.160 Sum_probs=76.0
Q ss_pred CCccCcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCC---CCEEEEEeCChHHHHHHHHHHhhCCCCCcc
Q psy7826 100 GAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGK---TGKVIGIEHIPQLVQRATHNVISGNPEFVK 176 (213)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~---~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~ 176 (213)
|++.+...+...+++.+. +.+..+|+|-+||+|+.....++.++. +..++|.|+++.....++-|+--.|+
T Consensus 166 GEfyTP~~v~~liv~~l~--~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi---- 239 (489)
T COG0286 166 GEFYTPREVSELIVELLD--PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGI---- 239 (489)
T ss_pred CccCChHHHHHHHHHHcC--CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCC----
Confidence 666666677777788773 567789999999999998888877742 36799999999999999999987774
Q ss_pred CCCeEEEEcCCCC-CCC----CCCCcCEEEEcCcC
Q psy7826 177 DGRIKFVLGDGRK-GYL----DEAPYDIIHVGGSI 206 (213)
Q Consensus 177 ~~~v~~~~~d~~~-~~~----~~~~fD~Ii~~~~~ 206 (213)
..++....+|... +.. ....||.|+++...
T Consensus 240 ~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf 274 (489)
T COG0286 240 EGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPF 274 (489)
T ss_pred CccccccccccccCCcccccCCccceeEEEeCCCC
Confidence 1145677777652 222 23569999998654
No 234
>KOG2940|consensus
Probab=97.60 E-value=0.00013 Score=57.89 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=61.5
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEE
Q psy7826 121 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 200 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~I 200 (213)
+....++|+||+.|+...++... + -.+++-+|.|-.|++.++..- ..+ -.++..++|-+.......++|+|
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e-~-vekli~~DtS~~M~~s~~~~q-dp~------i~~~~~v~DEE~Ldf~ens~DLi 141 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGE-G-VEKLIMMDTSYDMIKSCRDAQ-DPS------IETSYFVGDEEFLDFKENSVDLI 141 (325)
T ss_pred hhCcceeecccchhhhhHHHHhc-c-hhheeeeecchHHHHHhhccC-CCc------eEEEEEecchhcccccccchhhh
Confidence 34567999999999999998765 3 358999999999999988662 122 13566677766433445689999
Q ss_pred EEcCcCccCCC
Q psy7826 201 HVGGSIEDIPE 211 (213)
Q Consensus 201 i~~~~~~~~p~ 211 (213)
+++.++|++-+
T Consensus 142 isSlslHW~Nd 152 (325)
T KOG2940|consen 142 ISSLSLHWTND 152 (325)
T ss_pred hhhhhhhhhcc
Confidence 99999887643
No 235
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.53 E-value=0.00018 Score=58.20 Aligned_cols=71 Identities=23% Similarity=0.320 Sum_probs=50.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEE
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIH 201 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii 201 (213)
...++||+|+|-|..|..++..+ .+|++.|.|+.|..+.+++ | .+++..+-.. ..+.+||+|-
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~k----g--------~~vl~~~~w~--~~~~~fDvIs 156 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSKK----G--------FTVLDIDDWQ--QTDFKFDVIS 156 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHhC----C--------CeEEehhhhh--ccCCceEEEe
Confidence 35689999999999999999987 5899999999997665543 3 2233222211 1234799998
Q ss_pred EcCcCccC
Q psy7826 202 VGGSIEDI 209 (213)
Q Consensus 202 ~~~~~~~~ 209 (213)
+--.+..-
T Consensus 157 cLNvLDRc 164 (265)
T PF05219_consen 157 CLNVLDRC 164 (265)
T ss_pred ehhhhhcc
Confidence 87665543
No 236
>KOG4589|consensus
Probab=97.52 E-value=0.00015 Score=55.70 Aligned_cols=71 Identities=21% Similarity=0.334 Sum_probs=52.5
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEc-CCCCC--------
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLG-DGRKG-------- 190 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~-d~~~~-------- 190 (213)
+.|+++|||+||++|.++...-++++|++.|.|+|+-. +. +.+.+.++++ |+.++
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~-------p~~Ga~~i~~~dvtdp~~~~ki~e 130 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IE-------PPEGATIIQGNDVTDPETYRKIFE 130 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------cc-------CCCCcccccccccCCHHHHHHHHH
Confidence 57899999999999999999999988999999999742 10 0234556665 65532
Q ss_pred CCCCCCcCEEEEcCcC
Q psy7826 191 YLDEAPYDIIHVGGSI 206 (213)
Q Consensus 191 ~~~~~~fD~Ii~~~~~ 206 (213)
..++.+.|+|+++.++
T Consensus 131 ~lp~r~VdvVlSDMap 146 (232)
T KOG4589|consen 131 ALPNRPVDVVLSDMAP 146 (232)
T ss_pred hCCCCcccEEEeccCC
Confidence 1134578999998764
No 237
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.49 E-value=1.5e-05 Score=55.93 Aligned_cols=74 Identities=27% Similarity=0.501 Sum_probs=25.0
Q ss_pred EEEcCCccHHHHHHHHHcCCCC--EEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCC--CCCcCEEEE
Q psy7826 127 LDIGSGNGYFTALLAWCVGKTG--KVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLD--EAPYDIIHV 202 (213)
Q Consensus 127 LDiG~G~G~~t~~la~~~~~~~--~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~--~~~fD~Ii~ 202 (213)
||+|+..|..+..+++.+.+.+ +++++|..+. .+..++.+++.++ ..+++++.++..+..+. ..+||+|++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~----~~~~~~~~g~s~~~l~~~~~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL----SDRVEFIQGDSPDFLPSLPDGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS-------------GGG-----BTEEEEES-THHHHHHHHH--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC----CCeEEEEEcCcHHHHHHcCCCCEEEEEE
Confidence 6899999999999998875544 7999999985 3344444444443 35799999998632211 358999999
Q ss_pred cCc
Q psy7826 203 GGS 205 (213)
Q Consensus 203 ~~~ 205 (213)
++.
T Consensus 76 Dg~ 78 (106)
T PF13578_consen 76 DGD 78 (106)
T ss_dssp ES-
T ss_pred CCC
Confidence 984
No 238
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.00082 Score=52.37 Aligned_cols=80 Identities=24% Similarity=0.281 Sum_probs=65.0
Q ss_pred hCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC---CCC
Q psy7826 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL---DEA 195 (213)
Q Consensus 119 ~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~---~~~ 195 (213)
.+.+|.+||=+|+.+|....+++..++ +|.++++|.|+...+..-..+++ -+|+-.+.+|+..+.. --+
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~-------R~Ni~PIL~DA~~P~~Y~~~Ve 144 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK-------RPNIIPILEDARKPEKYRHLVE 144 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh-------CCCceeeecccCCcHHhhhhcc
Confidence 467899999999999999999999985 89999999999988777777665 3588899999874321 123
Q ss_pred CcCEEEEcCcC
Q psy7826 196 PYDIIHVGGSI 206 (213)
Q Consensus 196 ~fD~Ii~~~~~ 206 (213)
..|+|+.+.+=
T Consensus 145 ~VDviy~DVAQ 155 (231)
T COG1889 145 KVDVIYQDVAQ 155 (231)
T ss_pred cccEEEEecCC
Confidence 58999998763
No 239
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.44 E-value=0.00097 Score=53.74 Aligned_cols=80 Identities=16% Similarity=0.037 Sum_probs=58.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCE
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDI 199 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~ 199 (213)
..+..+|+|+|||.=-++...... .+...++|+||+..+++.....+..++ .+.++...|.....+. ...|+
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~------~~~~~~v~Dl~~~~~~-~~~Dl 174 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLG------VPHDARVRDLLSDPPK-EPADL 174 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT-------CEEEEEE-TTTSHTT-SEESE
T ss_pred CCCCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhC------CCcceeEeeeeccCCC-CCcch
Confidence 445679999999999999877655 356799999999999999999999887 3778888898754443 46899
Q ss_pred EEEcCcCc
Q psy7826 200 IHVGGSIE 207 (213)
Q Consensus 200 Ii~~~~~~ 207 (213)
.++--.++
T Consensus 175 aLllK~lp 182 (251)
T PF07091_consen 175 ALLLKTLP 182 (251)
T ss_dssp EEEET-HH
T ss_pred hhHHHHHH
Confidence 88755443
No 240
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.43 E-value=0.00047 Score=55.21 Aligned_cols=92 Identities=22% Similarity=0.321 Sum_probs=52.1
Q ss_pred HHHHHhhhCCCC--CEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCC-Cc---cCCCeEEEEc
Q psy7826 112 VLDDLSEELTEG--KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPE-FV---KDGRIKFVLG 185 (213)
Q Consensus 112 ~~~~l~~~~~~~--~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~-~~---~~~~v~~~~~ 185 (213)
++... .++++ .+|||+-+|-|.-+..++.. | ++|+++|.|+-.....+.-++++.-+ .. -..+++++.+
T Consensus 65 l~kA~--Glk~~~~~~VLDaTaGLG~Da~vlA~~-G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 65 LAKAV--GLKPGMRPSVLDATAGLGRDAFVLASL-G--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp HHHHT--T-BTTB---EEETT-TTSHHHHHHHHH-T----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred HHHHh--CCCCCCCCEEEECCCcchHHHHHHHcc-C--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 44444 35555 38999999999999999875 6 68999999998877766554332100 00 0137899999
Q ss_pred CCCCCCC-CCCCcCEEEEcCcCcc
Q psy7826 186 DGRKGYL-DEAPYDIIHVGGSIED 208 (213)
Q Consensus 186 d~~~~~~-~~~~fD~Ii~~~~~~~ 208 (213)
|..+... +..+||+|++|...++
T Consensus 140 d~~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 140 DALEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp -CCCHCCCHSS--SEEEE--S---
T ss_pred CHHHHHhhcCCCCCEEEECCCCCC
Confidence 9985432 2468999999988765
No 241
>PRK00536 speE spermidine synthase; Provisional
Probab=97.34 E-value=0.0023 Score=52.40 Aligned_cols=78 Identities=14% Similarity=-0.016 Sum_probs=57.5
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEE
Q psy7826 121 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 200 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~I 200 (213)
+..++||=+|.|-|+..+.+++. + .+|+-||+++..++.+++.+....- .++.++++++.. ..+ ...++||+|
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh--~-~~v~mVeID~~Vv~~~k~~lP~~~~-~~~DpRv~l~~~-~~~--~~~~~fDVI 143 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY--D-THVDFVQADEKILDSFISFFPHFHE-VKNNKNFTHAKQ-LLD--LDIKKYDLI 143 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc--C-CeeEEEECCHHHHHHHHHHCHHHHH-hhcCCCEEEeeh-hhh--ccCCcCCEE
Confidence 34579999999999999999998 3 3999999999999999996533210 123577887752 211 112579999
Q ss_pred EEcCc
Q psy7826 201 HVGGS 205 (213)
Q Consensus 201 i~~~~ 205 (213)
|++..
T Consensus 144 IvDs~ 148 (262)
T PRK00536 144 ICLQE 148 (262)
T ss_pred EEcCC
Confidence 99964
No 242
>PHA01634 hypothetical protein
Probab=97.34 E-value=0.0017 Score=46.96 Aligned_cols=73 Identities=15% Similarity=0.114 Sum_probs=52.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEE
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIH 201 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii 201 (213)
.+++|+|+|++.|..+++++-. |. .+|+++|.++...+..+++++-+.+ .+... ...+. .. .-++||+..
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~-GA-K~Vva~E~~~kl~k~~een~k~nnI----~DK~v-~~~eW-~~--~Y~~~Di~~ 97 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR-GA-SFVVQYEKEEKLRKKWEEVCAYFNI----CDKAV-MKGEW-NG--EYEDVDIFV 97 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc-Cc-cEEEEeccCHHHHHHHHHHhhhhee----eecee-ecccc-cc--cCCCcceEE
Confidence 5789999999999999999887 54 4999999999999999998876442 22111 11111 11 235788887
Q ss_pred EcC
Q psy7826 202 VGG 204 (213)
Q Consensus 202 ~~~ 204 (213)
++.
T Consensus 98 iDC 100 (156)
T PHA01634 98 MDC 100 (156)
T ss_pred EEc
Confidence 764
No 243
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.33 E-value=0.00038 Score=54.65 Aligned_cols=87 Identities=16% Similarity=0.103 Sum_probs=52.6
Q ss_pred CEEEEEcCCccHHHHHHHHHcCCC-CEEEEEeCChHHHHHHHHHHhhCCCC-----------------------------
Q psy7826 124 KKVLDIGSGNGYFTALLAWCVGKT-GKVIGIEHIPQLVQRATHNVISGNPE----------------------------- 173 (213)
Q Consensus 124 ~~vLDiG~G~G~~t~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~gl~----------------------------- 173 (213)
-+++|-|||.||+...+.-.-++. ..|+|-|+++++++.|++|+.-+.-+
T Consensus 53 ~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA~ 132 (246)
T PF11599_consen 53 YTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESAD 132 (246)
T ss_dssp EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred eeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 479999999999988877653222 47999999999999999997533110
Q ss_pred --------CccCCCeEEEEcCCCCCCC-----CCCCcCEEEEcCcCccCC
Q psy7826 174 --------FVKDGRIKFVLGDGRKGYL-----DEAPYDIIHVGGSIEDIP 210 (213)
Q Consensus 174 --------~~~~~~v~~~~~d~~~~~~-----~~~~fD~Ii~~~~~~~~p 210 (213)
........+.+.|++.+.. .....|+|+.+....++.
T Consensus 133 RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t 182 (246)
T PF11599_consen 133 RLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMT 182 (246)
T ss_dssp HHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSS
T ss_pred HHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccc
Confidence 0013346788888875221 222369999998766653
No 244
>KOG1596|consensus
Probab=97.30 E-value=0.00036 Score=55.72 Aligned_cols=83 Identities=20% Similarity=0.202 Sum_probs=65.1
Q ss_pred hCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC---CCC
Q psy7826 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL---DEA 195 (213)
Q Consensus 119 ~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~---~~~ 195 (213)
+++|+.+||=+|+++|..-.+++..++|++-||++|.|...=+.....+++ -+||-.+..|+..+.. .-.
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-------RtNiiPIiEDArhP~KYRmlVg 225 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-------RTNIIPIIEDARHPAKYRMLVG 225 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-------cCCceeeeccCCCchheeeeee
Confidence 578999999999999999999999999999999999998766555444443 3688888899874321 123
Q ss_pred CcCEEEEcCcCcc
Q psy7826 196 PYDIIHVGGSIED 208 (213)
Q Consensus 196 ~fD~Ii~~~~~~~ 208 (213)
-.|+||++.+-+.
T Consensus 226 mVDvIFaDvaqpd 238 (317)
T KOG1596|consen 226 MVDVIFADVAQPD 238 (317)
T ss_pred eEEEEeccCCCch
Confidence 5799999987543
No 245
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.29 E-value=0.001 Score=54.74 Aligned_cols=80 Identities=25% Similarity=0.256 Sum_probs=48.6
Q ss_pred CEEEEEcCCccHHH-HHHHHHcCCCCEEEEEeCChHHHHHHHHHHh-hCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEE
Q psy7826 124 KKVLDIGSGNGYFT-ALLAWCVGKTGKVIGIEHIPQLVQRATHNVI-SGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIH 201 (213)
Q Consensus 124 ~~vLDiG~G~G~~t-~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~-~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii 201 (213)
.+|+=+|||+=-+| ..+++..++...++++|+++.+++.+++.++ ..|+ ..+++|+.+|......+...||+|+
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L----~~~m~f~~~d~~~~~~dl~~~DvV~ 197 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL----SKRMSFITADVLDVTYDLKEYDVVF 197 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-----SSEEEEES-GGGG-GG----SEEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc----cCCeEEEecchhccccccccCCEEE
Confidence 49999999987766 5555544556789999999999999999887 5554 4689999999875433445799999
Q ss_pred EcCcCc
Q psy7826 202 VGGSIE 207 (213)
Q Consensus 202 ~~~~~~ 207 (213)
+.+-+.
T Consensus 198 lAalVg 203 (276)
T PF03059_consen 198 LAALVG 203 (276)
T ss_dssp E-TT-S
T ss_pred Ehhhcc
Confidence 877554
No 246
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.08 E-value=0.0016 Score=52.01 Aligned_cols=76 Identities=28% Similarity=0.274 Sum_probs=50.8
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEE-cCCCCCCCC--CCCc
Q psy7826 121 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVL-GDGRKGYLD--EAPY 197 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~-~d~~~~~~~--~~~f 197 (213)
.++..+||+|+.||++|-.+.+. |. .+|+|+|.....+..--++ .++|..+. -|+....++ .+..
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~-gA-k~VyavDVG~~Ql~~kLR~----------d~rV~~~E~tN~r~l~~~~~~~~~ 145 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQR-GA-KHVYAVDVGYGQLHWKLRN----------DPRVIVLERTNVRYLTPEDFTEKP 145 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHc-CC-cEEEEEEccCCccCHhHhc----------CCcEEEEecCChhhCCHHHcccCC
Confidence 46789999999999999999987 44 5999999987665432222 34544433 344321111 1257
Q ss_pred CEEEEcCcCcc
Q psy7826 198 DIIHVGGSIED 208 (213)
Q Consensus 198 D~Ii~~~~~~~ 208 (213)
|+++++.+...
T Consensus 146 d~~v~DvSFIS 156 (245)
T COG1189 146 DLIVIDVSFIS 156 (245)
T ss_pred CeEEEEeehhh
Confidence 89999887643
No 247
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.00 E-value=0.0019 Score=50.61 Aligned_cols=89 Identities=11% Similarity=0.090 Sum_probs=49.0
Q ss_pred CCCEEEEEcCCccH----HHHHHHHHcC---C-CCEEEEEeCChHHHHHHHHHH------h--------hC-----C-CC
Q psy7826 122 EGKKVLDIGSGNGY----FTALLAWCVG---K-TGKVIGIEHIPQLVQRATHNV------I--------SG-----N-PE 173 (213)
Q Consensus 122 ~~~~vLDiG~G~G~----~t~~la~~~~---~-~~~v~gvD~s~~~l~~a~~~~------~--------~~-----g-l~ 173 (213)
+.-+|+.+||++|- +++.+.+..+ + +.+|+|.|+|+.+++.|++-. + ++ + .-
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 34589999999994 3344444221 1 358999999999999998632 0 00 0 00
Q ss_pred Cc---cCCCeEEEEcCCCCCCCCCCCcCEEEEcCcCccCC
Q psy7826 174 FV---KDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIP 210 (213)
Q Consensus 174 ~~---~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~p 210 (213)
.+ -..+|+|.+.|+....+..+.||+|+|--++-++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~ 150 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFD 150 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeC
Confidence 00 01368999999987444456899999988877654
No 248
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.97 E-value=0.0032 Score=51.98 Aligned_cols=73 Identities=21% Similarity=0.112 Sum_probs=54.1
Q ss_pred EEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCC--CCCcCEEEE
Q psy7826 125 KVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLD--EAPYDIIHV 202 (213)
Q Consensus 125 ~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~--~~~fD~Ii~ 202 (213)
+++|+.||.|+.+..+.+. |- ..+.++|+++.+++..++|.. .. +.++|+...... ...+|+++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~-~~v~a~e~~~~a~~~~~~N~~----------~~-~~~~Di~~~~~~~~~~~~D~l~~ 68 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GF-EIVAANEIDKSAAETYEANFP----------NK-LIEGDITKIDEKDFIPDIDLLTG 68 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CC-EEEEEEeCCHHHHHHHHHhCC----------CC-CccCccccCchhhcCCCCCEEEe
Confidence 6899999999999888776 53 368889999999999888853 21 556676643221 246999999
Q ss_pred cCcCccCC
Q psy7826 203 GGSIEDIP 210 (213)
Q Consensus 203 ~~~~~~~p 210 (213)
+..+..++
T Consensus 69 gpPCq~fS 76 (275)
T cd00315 69 GFPCQPFS 76 (275)
T ss_pred CCCChhhh
Confidence 98876543
No 249
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.95 E-value=0.01 Score=48.79 Aligned_cols=88 Identities=11% Similarity=0.100 Sum_probs=59.1
Q ss_pred CCEEEEEcCCcc----HHHHHHHHHcC----CCCEEEEEeCChHHHHHHHHHHhh-----CCC---------CCc-c---
Q psy7826 123 GKKVLDIGSGNG----YFTALLAWCVG----KTGKVIGIEHIPQLVQRATHNVIS-----GNP---------EFV-K--- 176 (213)
Q Consensus 123 ~~~vLDiG~G~G----~~t~~la~~~~----~~~~v~gvD~s~~~l~~a~~~~~~-----~gl---------~~~-~--- 176 (213)
.-+|+-+||+|| +.+..+.+..+ ...+|+|.|+|...++.|+.-.=. .++ +.. +
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 458999999999 35555566653 246899999999999999853200 111 000 0
Q ss_pred ------CCCeEEEEcCCCCCCCCCCCcCEEEEcCcCccCC
Q psy7826 177 ------DGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIP 210 (213)
Q Consensus 177 ------~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~p 210 (213)
...|.|.+.|+....+..+.||+|+|--++-++.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd 216 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFD 216 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeC
Confidence 1357888888875442345799999987766554
No 250
>KOG1269|consensus
Probab=96.91 E-value=0.0016 Score=55.73 Aligned_cols=88 Identities=23% Similarity=0.282 Sum_probs=71.9
Q ss_pred hCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcC
Q psy7826 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYD 198 (213)
Q Consensus 119 ~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD 198 (213)
...++.+++|+|||.|..+.+++..- ...++|+|.++..+.++.......++ .....++.+|....+.++..||
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l----~~k~~~~~~~~~~~~fedn~fd 180 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYL----DNKCNFVVADFGKMPFEDNTFD 180 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHh----hhhcceehhhhhcCCCCccccC
Confidence 46778899999999999999999873 36899999999999888887766664 3344557888887666667999
Q ss_pred EEEEcCcCccCCCC
Q psy7826 199 IIHVGGSIEDIPEG 212 (213)
Q Consensus 199 ~Ii~~~~~~~~p~~ 212 (213)
.+.+..+..|.|+.
T Consensus 181 ~v~~ld~~~~~~~~ 194 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDL 194 (364)
T ss_pred cEEEEeecccCCcH
Confidence 99999999998863
No 251
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.86 E-value=0.013 Score=42.02 Aligned_cols=72 Identities=28% Similarity=0.420 Sum_probs=47.7
Q ss_pred EEEEcCCccHHHHHHHHHcCCC-CEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCC--CCCCC-CCcCEEE
Q psy7826 126 VLDIGSGNGYFTALLAWCVGKT-GKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK--GYLDE-APYDIIH 201 (213)
Q Consensus 126 vLDiG~G~G~~t~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~--~~~~~-~~fD~Ii 201 (213)
++|+|||+|..+ .++... +. ..++++|+++.++..++......+ ...+.+..+|... ..... ..||++.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 124 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLG-GRGAYVVGVDLSPEMLALARARAEGAG-----LGLVDFVVADALGGVLPFEDSASFDLVI 124 (257)
T ss_pred eEEecCCcCHHH-HHHHhC-CCCceEEEEeCCHHHHHHHHhhhhhcC-----CCceEEEEeccccCCCCCCCCCceeEEe
Confidence 999999999987 555543 33 389999999999998555543321 1116788888764 22222 3699994
Q ss_pred EcC
Q psy7826 202 VGG 204 (213)
Q Consensus 202 ~~~ 204 (213)
+..
T Consensus 125 ~~~ 127 (257)
T COG0500 125 SLL 127 (257)
T ss_pred eee
Confidence 433
No 252
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.84 E-value=0.022 Score=45.79 Aligned_cols=77 Identities=18% Similarity=0.223 Sum_probs=46.0
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCC--CCCcC
Q psy7826 121 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLD--EAPYD 198 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~--~~~fD 198 (213)
-.|++||=+|=.- ..|..++.. +...+|+-+|+++..++..++.+++.|+ +|+.+..|+..++|+ .++||
T Consensus 43 L~gk~il~lGDDD-LtSlA~al~-~~~~~I~VvDiDeRll~fI~~~a~~~gl------~i~~~~~DlR~~LP~~~~~~fD 114 (243)
T PF01861_consen 43 LEGKRILFLGDDD-LTSLALALT-GLPKRITVVDIDERLLDFINRVAEEEGL------PIEAVHYDLRDPLPEELRGKFD 114 (243)
T ss_dssp STT-EEEEES-TT--HHHHHHHH-T--SEEEEE-S-HHHHHHHHHHHHHHT--------EEEE---TTS---TTTSS-BS
T ss_pred ccCCEEEEEcCCc-HHHHHHHhh-CCCCeEEEEEcCHHHHHHHHHHHHHcCC------ceEEEEecccccCCHHHhcCCC
Confidence 3578899888332 233444433 4456999999999999999999999884 499999999987765 36899
Q ss_pred EEEEcCc
Q psy7826 199 IIHVGGS 205 (213)
Q Consensus 199 ~Ii~~~~ 205 (213)
+++.+..
T Consensus 115 ~f~TDPP 121 (243)
T PF01861_consen 115 VFFTDPP 121 (243)
T ss_dssp EEEE---
T ss_pred EEEeCCC
Confidence 9999864
No 253
>KOG2671|consensus
Probab=96.82 E-value=0.0018 Score=54.34 Aligned_cols=81 Identities=19% Similarity=0.145 Sum_probs=63.7
Q ss_pred hCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHH-------HHHHHHhhCCCCCccCCCeEEEEcCCCC-C
Q psy7826 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQ-------RATHNVISGNPEFVKDGRIKFVLGDGRK-G 190 (213)
Q Consensus 119 ~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~-------~a~~~~~~~gl~~~~~~~v~~~~~d~~~-~ 190 (213)
...+|+.|+|--.|||++....|.. | +.|+|.||+-.++. ..+.|++++|.+ ..-+.++.+|... +
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa~F-G--a~viGtDIDyr~vragrg~~~si~aNFkQYg~~---~~fldvl~~D~sn~~ 278 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAAHF-G--AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS---SQFLDVLTADFSNPP 278 (421)
T ss_pred ccCCCCEEecCccccCceeeehhhh-c--ceeeccccchheeecccCCCcchhHhHHHhCCc---chhhheeeecccCcc
Confidence 5789999999999999998887776 5 79999999988887 356788888841 1236788899884 3
Q ss_pred CCCCCCcCEEEEcCc
Q psy7826 191 YLDEAPYDIIHVGGS 205 (213)
Q Consensus 191 ~~~~~~fD~Ii~~~~ 205 (213)
+.....||.|+++..
T Consensus 279 ~rsn~~fDaIvcDPP 293 (421)
T KOG2671|consen 279 LRSNLKFDAIVCDPP 293 (421)
T ss_pred hhhcceeeEEEeCCC
Confidence 344568999999864
No 254
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.81 E-value=0.0039 Score=49.03 Aligned_cols=73 Identities=14% Similarity=0.184 Sum_probs=40.6
Q ss_pred HHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCC
Q psy7826 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 189 (213)
Q Consensus 110 ~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~ 189 (213)
..+++.+. ...++..|-|+|||.+.++..+. ...+|+++|.-. .+-.+..+|...
T Consensus 61 d~iI~~l~-~~~~~~viaD~GCGdA~la~~~~----~~~~V~SfDLva--------------------~n~~Vtacdia~ 115 (219)
T PF05148_consen 61 DVIIEWLK-KRPKSLVIADFGCGDAKLAKAVP----NKHKVHSFDLVA--------------------PNPRVTACDIAN 115 (219)
T ss_dssp HHHHHHHC-TS-TTS-EEEES-TT-HHHHH------S---EEEEESS---------------------SSTTEEES-TTS
T ss_pred HHHHHHHH-hcCCCEEEEECCCchHHHHHhcc----cCceEEEeeccC--------------------CCCCEEEecCcc
Confidence 45666664 23445689999999998874432 234799999863 223467799986
Q ss_pred CCCCCCCcCEEEEcCcCc
Q psy7826 190 GYLDEAPYDIIHVGGSIE 207 (213)
Q Consensus 190 ~~~~~~~fD~Ii~~~~~~ 207 (213)
.+.++++.|+++...++.
T Consensus 116 vPL~~~svDv~VfcLSLM 133 (219)
T PF05148_consen 116 VPLEDESVDVAVFCLSLM 133 (219)
T ss_dssp -S--TT-EEEEEEES---
T ss_pred CcCCCCceeEEEEEhhhh
Confidence 566667999999988764
No 255
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.79 E-value=0.0076 Score=51.17 Aligned_cols=87 Identities=18% Similarity=0.219 Sum_probs=64.5
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHH--hhCCCCCccCCCeEEEEcCCCCCCC-CCCCc
Q psy7826 121 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNV--ISGNPEFVKDGRIKFVLGDGRKGYL-DEAPY 197 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~--~~~gl~~~~~~~v~~~~~d~~~~~~-~~~~f 197 (213)
+...+||-+|-|-|.-.+.+.+. +.-.+|+-+|.+|.|++.++++. ...+=..+..++++++..|+..-.. ....|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 44568999999999999999987 34579999999999999999553 3322122345789999999874221 23479
Q ss_pred CEEEEcCcCcc
Q psy7826 198 DIIHVGGSIED 208 (213)
Q Consensus 198 D~Ii~~~~~~~ 208 (213)
|.||++..=+.
T Consensus 367 D~vIVDl~DP~ 377 (508)
T COG4262 367 DVVIVDLPDPS 377 (508)
T ss_pred cEEEEeCCCCC
Confidence 99999875443
No 256
>KOG1501|consensus
Probab=96.72 E-value=0.0042 Score=53.83 Aligned_cols=56 Identities=23% Similarity=0.347 Sum_probs=47.4
Q ss_pred EEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcC
Q psy7826 125 KVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGD 186 (213)
Q Consensus 125 ~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d 186 (213)
.|||+|+|||.++...++. |.+ +|+++|.-..|.+.|++-..++|. .++|.++.--
T Consensus 69 ~vLdigtGTGLLSmMAvra-gaD-~vtA~EvfkPM~d~arkI~~kng~----SdkI~vInkr 124 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRA-GAD-SVTACEVFKPMVDLARKIMHKNGM----SDKINVINKR 124 (636)
T ss_pred EEEEccCCccHHHHHHHHh-cCC-eEEeehhhchHHHHHHHHHhcCCC----ccceeeeccc
Confidence 5899999999999888887 443 899999999999999999999986 5667666433
No 257
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.70 E-value=0.0093 Score=46.91 Aligned_cols=60 Identities=28% Similarity=0.357 Sum_probs=34.9
Q ss_pred CCEEEEEcCCccHHHHHHHHH---cCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCC
Q psy7826 123 GKKVLDIGSGNGYFTALLAWC---VGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR 188 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~---~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~ 188 (213)
.+.|+|+|...|+.+.++|.. +++.++|+|+|++........ .+...+ .++|++++||..
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a--~e~hp~----~~rI~~i~Gds~ 95 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA--IESHPM----SPRITFIQGDSI 95 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G--GGG--------TTEEEEES-SS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH--Hhhccc----cCceEEEECCCC
Confidence 458999999999999888754 456789999999654443222 222222 368999999987
No 258
>KOG4058|consensus
Probab=96.39 E-value=0.0076 Score=44.77 Aligned_cols=91 Identities=26% Similarity=0.309 Sum_probs=64.7
Q ss_pred HHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCC
Q psy7826 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 189 (213)
Q Consensus 110 ~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~ 189 (213)
+.++.++. -.+..+.+|+|+|-|..-...++. + --..+|+|.++..+..++-..-+.|. ...+.|..-|+..
T Consensus 62 ~nVLSll~--~n~~GklvDlGSGDGRiVlaaar~-g-~~~a~GvELNpwLVaysrl~a~R~g~----~k~trf~RkdlwK 133 (199)
T KOG4058|consen 62 ENVLSLLR--GNPKGKLVDLGSGDGRIVLAAARC-G-LRPAVGVELNPWLVAYSRLHAWRAGC----AKSTRFRRKDLWK 133 (199)
T ss_pred HHHHHHcc--CCCCCcEEeccCCCceeehhhhhh-C-CCcCCceeccHHHHHHHHHHHHHHhc----ccchhhhhhhhhh
Confidence 34566662 345568999999999998888776 3 23789999999999999988877775 4567888888764
Q ss_pred CCCCCCCcCEEEEcCcCccCC
Q psy7826 190 GYLDEAPYDIIHVGGSIEDIP 210 (213)
Q Consensus 190 ~~~~~~~fD~Ii~~~~~~~~p 210 (213)
... ..|.-|++.++..-+|
T Consensus 134 ~dl--~dy~~vviFgaes~m~ 152 (199)
T KOG4058|consen 134 VDL--RDYRNVVIFGAESVMP 152 (199)
T ss_pred ccc--cccceEEEeehHHHHh
Confidence 332 2455565555544443
No 259
>KOG3178|consensus
Probab=96.35 E-value=0.01 Score=50.03 Aligned_cols=74 Identities=20% Similarity=0.170 Sum_probs=60.9
Q ss_pred CEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEEEc
Q psy7826 124 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVG 203 (213)
Q Consensus 124 ~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 203 (213)
...+|+|.|.|..+..+...+ .+|-+++.+...+-.++.++. +.|+.+-+|.....|. -|+|++-
T Consensus 179 ~~avDvGgGiG~v~k~ll~~f---p~ik~infdlp~v~~~a~~~~---------~gV~~v~gdmfq~~P~---~daI~mk 243 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKY---PHIKGINFDLPFVLAAAPYLA---------PGVEHVAGDMFQDTPK---GDAIWMK 243 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhC---CCCceeecCHHHHHhhhhhhc---------CCcceecccccccCCC---cCeEEEE
Confidence 679999999999999999876 368899999888888887753 3478888998865443 3799999
Q ss_pred CcCccCCCC
Q psy7826 204 GSIEDIPEG 212 (213)
Q Consensus 204 ~~~~~~p~~ 212 (213)
..++|++|.
T Consensus 244 WiLhdwtDe 252 (342)
T KOG3178|consen 244 WILHDWTDE 252 (342)
T ss_pred eecccCChH
Confidence 999999874
No 260
>KOG3115|consensus
Probab=96.33 E-value=0.0057 Score=47.79 Aligned_cols=65 Identities=15% Similarity=0.105 Sum_probs=48.1
Q ss_pred CCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCC--CCccCCCeEEEEcCCC
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNP--EFVKDGRIKFVLGDGR 188 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl--~~~~~~~v~~~~~d~~ 188 (213)
.-.+.|||||-|++...++..+ |+.-++|+||--..-+..+++++.++. ......|+.++..++.
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~nam 127 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAM 127 (249)
T ss_pred cceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccch
Confidence 3468999999999999999997 788999999887776766666654431 1111467777777765
No 261
>KOG1227|consensus
Probab=96.32 E-value=0.0017 Score=53.52 Aligned_cols=78 Identities=26% Similarity=0.334 Sum_probs=58.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEE
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIH 201 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii 201 (213)
.+..|+|+-+|-||+|..+.-..|. ..|+++|.+++.++..+++++.++. ..+..++.+|-...-+ ....|.|.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agA-k~V~A~EwNp~svEaLrR~~~~N~V----~~r~~i~~gd~R~~~~-~~~AdrVn 267 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGA-KTVFACEWNPWSVEALRRNAEANNV----MDRCRITEGDNRNPKP-RLRADRVN 267 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCc-cEEEEEecCHHHHHHHHHHHHhcch----HHHHHhhhccccccCc-cccchhee
Confidence 4578999999999999844433343 5899999999999999999998774 4456677777664333 34678888
Q ss_pred EcCc
Q psy7826 202 VGGS 205 (213)
Q Consensus 202 ~~~~ 205 (213)
.+.-
T Consensus 268 LGLl 271 (351)
T KOG1227|consen 268 LGLL 271 (351)
T ss_pred eccc
Confidence 7653
No 262
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.20 E-value=0.024 Score=44.60 Aligned_cols=43 Identities=28% Similarity=0.270 Sum_probs=33.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHH
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATH 165 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 165 (213)
-.+|+.|||.-||+|..+....+. + -+.+|+|+++..++.|++
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l-~--R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEEL-G--RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHT-T---EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHHHc-C--CeEEEEeCCHHHHHHhcC
Confidence 578999999999999987665544 4 489999999999999875
No 263
>KOG1098|consensus
Probab=96.19 E-value=0.0035 Score=56.26 Aligned_cols=71 Identities=15% Similarity=0.197 Sum_probs=51.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC--------
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-------- 191 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~-------- 191 (213)
+.++..|||+||++|++....++.++..+-|+|+|+-+-.. .+++..++.|++...
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp----------------~~~c~t~v~dIttd~cr~~l~k~ 105 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKP----------------IPNCDTLVEDITTDECRSKLRKI 105 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeeccc----------------CCccchhhhhhhHHHHHHHHHHH
Confidence 57888999999999999999999987677899999865211 456666666665110
Q ss_pred CCCCCcCEEEEcCcC
Q psy7826 192 LDEAPYDIIHVGGSI 206 (213)
Q Consensus 192 ~~~~~fD~Ii~~~~~ 206 (213)
...-+.|+|+.++++
T Consensus 106 l~t~~advVLhDgap 120 (780)
T KOG1098|consen 106 LKTWKADVVLHDGAP 120 (780)
T ss_pred HHhCCCcEEeecCCC
Confidence 011245888888764
No 264
>PRK11524 putative methyltransferase; Provisional
Probab=96.19 E-value=0.025 Score=46.85 Aligned_cols=47 Identities=26% Similarity=0.198 Sum_probs=39.7
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhh
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS 169 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~ 169 (213)
-.+|+.|||-.||+|..+....+ ++ -+.+|+|++++.++.|++++..
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~-lg--R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKA-SG--RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHH-cC--CCEEEEeCCHHHHHHHHHHHHh
Confidence 57899999999999988766444 44 4899999999999999999754
No 265
>KOG1099|consensus
Probab=96.04 E-value=0.0057 Score=48.69 Aligned_cols=69 Identities=19% Similarity=0.322 Sum_probs=50.5
Q ss_pred CCEEEEEcCCccHHHHHHHHHcCC----CC----EEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCC----
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVGK----TG----KVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKG---- 190 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~~----~~----~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~---- 190 (213)
-.+++|+|+++|+++..+++.+-. ++ +|++||+.+- .. .+.|..+++|++..
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aP-----I~GV~qlq~DIT~~stae 105 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------AP-----IEGVIQLQGDITSASTAE 105 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------Cc-----cCceEEeecccCCHhHHH
Confidence 358999999999999999987632 11 3999998641 11 46788899998732
Q ss_pred ----CCCCCCcCEEEEcCcCc
Q psy7826 191 ----YLDEAPYDIIHVGGSIE 207 (213)
Q Consensus 191 ----~~~~~~fD~Ii~~~~~~ 207 (213)
.....+-|+|++++++.
T Consensus 106 ~Ii~hfggekAdlVvcDGAPD 126 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGAPD 126 (294)
T ss_pred HHHHHhCCCCccEEEeCCCCC
Confidence 22345789999999864
No 266
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.01 E-value=0.032 Score=45.62 Aligned_cols=83 Identities=22% Similarity=0.276 Sum_probs=52.4
Q ss_pred CEEEEEcCCc--cHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCC-----------
Q psy7826 124 KKVLDIGSGN--GYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKG----------- 190 (213)
Q Consensus 124 ~~vLDiG~G~--G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~----------- 190 (213)
...||+|||- -..+..+|+...|+++|+=+|.++-.+..++..+.... .....++++|+.++
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~-----~g~t~~v~aD~r~p~~iL~~p~~~~ 144 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP-----RGRTAYVQADLRDPEAILAHPEVRG 144 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T-----TSEEEEEE--TT-HHHHHCSHHHHC
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC-----CccEEEEeCCCCCHHHHhcCHHHHh
Confidence 3699999994 34667788887899999999999999999999887633 12389999999732
Q ss_pred CCCCCCcCEEEEcCcCccCCC
Q psy7826 191 YLDEAPYDIIHVGGSIEDIPE 211 (213)
Q Consensus 191 ~~~~~~fD~Ii~~~~~~~~p~ 211 (213)
..+-...=.+++.+.++++++
T Consensus 145 ~lD~~rPVavll~~vLh~v~D 165 (267)
T PF04672_consen 145 LLDFDRPVAVLLVAVLHFVPD 165 (267)
T ss_dssp C--TTS--EEEECT-GGGS-C
T ss_pred cCCCCCCeeeeeeeeeccCCC
Confidence 111123346888889999987
No 267
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=95.93 E-value=0.079 Score=45.07 Aligned_cols=72 Identities=21% Similarity=0.227 Sum_probs=52.1
Q ss_pred CCCccCcHHHHHHHHHHHhh--------hCCC-CCEEEEEcCCccHHHHHHHHHcC---C----CCEEEEEeCChHHHHH
Q psy7826 99 YGAHMQAPFQQAMVLDDLSE--------ELTE-GKKVLDIGSGNGYFTALLAWCVG---K----TGKVIGIEHIPQLVQR 162 (213)
Q Consensus 99 ~~~~~~~~~~~~~~~~~l~~--------~~~~-~~~vLDiG~G~G~~t~~la~~~~---~----~~~v~gvD~s~~~l~~ 162 (213)
.|.++++|++.+..-++++. ...| .-.++|+|+|+|.+...+++.+. | ..+++-+|+|++..++
T Consensus 45 ~GDFiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~ 124 (370)
T COG1565 45 KGDFITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRAR 124 (370)
T ss_pred cCCeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHH
Confidence 36788888876665444432 1222 34799999999999988876541 2 3589999999999988
Q ss_pred HHHHHhhC
Q psy7826 163 ATHNVISG 170 (213)
Q Consensus 163 a~~~~~~~ 170 (213)
-+++++..
T Consensus 125 Qk~~L~~~ 132 (370)
T COG1565 125 QKETLKAT 132 (370)
T ss_pred HHHHHhcc
Confidence 88887653
No 268
>KOG1331|consensus
Probab=95.72 E-value=0.0058 Score=50.06 Aligned_cols=75 Identities=21% Similarity=0.271 Sum_probs=56.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCE
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDI 199 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~ 199 (213)
...+..++|+|||-|-++.. .|...++|.|++...+..+++. | ......+|+...+....+||.
T Consensus 43 ~~~gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~~l~~~ak~~----~-------~~~~~~ad~l~~p~~~~s~d~ 106 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCTGLLGGAKRS----G-------GDNVCRADALKLPFREESFDA 106 (293)
T ss_pred cCCcceeeecccCCcccCcC-----CCcceeeecchhhhhccccccC----C-------CceeehhhhhcCCCCCCcccc
Confidence 44578899999999977522 2556899999998887776644 1 125777888755555568999
Q ss_pred EEEcCcCccCC
Q psy7826 200 IHVGGSIEDIP 210 (213)
Q Consensus 200 Ii~~~~~~~~p 210 (213)
+++.++++|+.
T Consensus 107 ~lsiavihhls 117 (293)
T KOG1331|consen 107 ALSIAVIHHLS 117 (293)
T ss_pred chhhhhhhhhh
Confidence 99999999875
No 269
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=95.71 E-value=0.026 Score=48.66 Aligned_cols=79 Identities=19% Similarity=0.155 Sum_probs=57.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCC-CeEEEEcCCCCCC-CCCCCcCE
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG-RIKFVLGDGRKGY-LDEAPYDI 199 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~-~v~~~~~d~~~~~-~~~~~fD~ 199 (213)
.+.++||.=+|+|.-+...+..++...+|+..|+|+++++..++|++.+++ .. .+++.+.|+.... .....||+
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~----~~~~~~v~~~DAn~ll~~~~~~fD~ 124 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGL----EDERIEVSNMDANVLLYSRQERFDV 124 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-----SGCCEEEEES-HHHHHCHSTT-EEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccc----cCceEEEehhhHHHHhhhccccCCE
Confidence 345899999999999988888754446999999999999999999999985 33 5889999986422 13457999
Q ss_pred EEEcC
Q psy7826 200 IHVGG 204 (213)
Q Consensus 200 Ii~~~ 204 (213)
|=+|.
T Consensus 125 IDlDP 129 (377)
T PF02005_consen 125 IDLDP 129 (377)
T ss_dssp EEE--
T ss_pred EEeCC
Confidence 97764
No 270
>PRK13699 putative methylase; Provisional
Probab=95.63 E-value=0.07 Score=42.79 Aligned_cols=47 Identities=23% Similarity=0.258 Sum_probs=39.7
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhh
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS 169 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~ 169 (213)
-.+|+.|||--||+|.......+. + -+.+|+|++++..+.+.++++.
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~-~--r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQS-G--RRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHc-C--CCEEEEecCHHHHHHHHHHHHH
Confidence 568999999999999887665554 4 4899999999999999998865
No 271
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.58 E-value=0.13 Score=41.80 Aligned_cols=78 Identities=18% Similarity=0.234 Sum_probs=50.5
Q ss_pred CEEEEEcCCccHHHHHHHHHcCCC-------CEEEEEeCChHHHHHHHHHHhhC-----CCCCccCCCeEEEEcCCCCCC
Q psy7826 124 KKVLDIGSGNGYFTALLAWCVGKT-------GKVIGIEHIPQLVQRATHNVISG-----NPEFVKDGRIKFVLGDGRKGY 191 (213)
Q Consensus 124 ~~vLDiG~G~G~~t~~la~~~~~~-------~~v~gvD~s~~~l~~a~~~~~~~-----gl~~~~~~~v~~~~~d~~~~~ 191 (213)
-+|+|+|+|+|.++..+++.+... .+++-+|+|+.+.+.-++++... .. ..+|.+ ..+..+ .
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~----~~~i~w-~~~l~~-~ 93 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEF----GDPIRW-LDDLEE-V 93 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTT----CGCEEE-ESSGGC-S
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhccccccc----CCccch-hhhhhc-c
Confidence 589999999999999998876422 47999999999998888887652 11 234555 223322 1
Q ss_pred CCCCCcCEEEEcCcCccCC
Q psy7826 192 LDEAPYDIIHVGGSIEDIP 210 (213)
Q Consensus 192 ~~~~~fD~Ii~~~~~~~~p 210 (213)
+ ..-+|+++..+..+|
T Consensus 94 p---~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 94 P---FPGFIIANELFDALP 109 (252)
T ss_dssp ----CCEEEEEESSGGGS-
T ss_pred c---CCEEEEEeeehhcCc
Confidence 1 245666666666555
No 272
>KOG3045|consensus
Probab=95.50 E-value=0.05 Score=44.25 Aligned_cols=69 Identities=14% Similarity=0.221 Sum_probs=48.6
Q ss_pred HHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC
Q psy7826 112 VLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY 191 (213)
Q Consensus 112 ~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~ 191 (213)
++..+. .......|-|+|||.+-++. . ..-+|+++|+.+ .+-.++.+|+...+
T Consensus 171 ii~~ik-~r~~~~vIaD~GCGEakiA~----~--~~~kV~SfDL~a--------------------~~~~V~~cDm~~vP 223 (325)
T KOG3045|consen 171 IIRKIK-RRPKNIVIADFGCGEAKIAS----S--ERHKVHSFDLVA--------------------VNERVIACDMRNVP 223 (325)
T ss_pred HHHHHH-hCcCceEEEecccchhhhhh----c--cccceeeeeeec--------------------CCCceeeccccCCc
Confidence 444442 22344579999999998764 2 224899999752 34567889998766
Q ss_pred CCCCCcCEEEEcCcCc
Q psy7826 192 LDEAPYDIIHVGGSIE 207 (213)
Q Consensus 192 ~~~~~fD~Ii~~~~~~ 207 (213)
.++++.|+++...++.
T Consensus 224 l~d~svDvaV~CLSLM 239 (325)
T KOG3045|consen 224 LEDESVDVAVFCLSLM 239 (325)
T ss_pred CccCcccEEEeeHhhh
Confidence 6778999999887653
No 273
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=95.29 E-value=0.051 Score=40.13 Aligned_cols=53 Identities=15% Similarity=0.277 Sum_probs=37.9
Q ss_pred EEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCC--CCCCCCcCEEEEcCc
Q psy7826 149 KVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKG--YLDEAPYDIIHVGGS 205 (213)
Q Consensus 149 ~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~--~~~~~~fD~Ii~~~~ 205 (213)
+|+|+||.+.+++.+++++++.++ ..+++++..+-... ..+.+++|+++.|..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~----~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG 55 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL----EDRVTLILDSHENLDEYIPEGPVDAAIFNLG 55 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-----GSGEEEEES-GGGGGGT--S--EEEEEEEES
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC----CCcEEEEECCHHHHHhhCccCCcCEEEEECC
Confidence 699999999999999999999885 56799998876521 112247999998864
No 274
>KOG2651|consensus
Probab=95.25 E-value=0.078 Score=45.36 Aligned_cols=44 Identities=32% Similarity=0.408 Sum_probs=36.3
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHH
Q psy7826 121 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN 166 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~ 166 (213)
.+-+.|+|+|+|.|+++..++-.. .-+|+++|-|....++|++.
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHHH
Confidence 345689999999999999998764 36999999998887777653
No 275
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=95.16 E-value=0.026 Score=47.13 Aligned_cols=72 Identities=24% Similarity=0.217 Sum_probs=51.5
Q ss_pred EEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCC-CC-CcCEEEE
Q psy7826 125 KVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLD-EA-PYDIIHV 202 (213)
Q Consensus 125 ~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~-~~-~fD~Ii~ 202 (213)
+++|+.||.|+.+..+.+. |- .-+.++|+++.+.+.-+.|. + ....+|+...... .. .+|+++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a-g~-~~~~a~e~~~~a~~~y~~N~----------~--~~~~~Di~~~~~~~l~~~~D~l~g 67 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA-GF-EVVWAVEIDPDACETYKANF----------P--EVICGDITEIDPSDLPKDVDLLIG 67 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT-TE-EEEEEEESSHHHHHHHHHHH----------T--EEEESHGGGCHHHHHHHT-SEEEE
T ss_pred cEEEEccCccHHHHHHHhc-Cc-EEEEEeecCHHHHHhhhhcc----------c--ccccccccccccccccccceEEEe
Confidence 6999999999999998876 42 36889999999999988884 3 7888888743211 11 4899999
Q ss_pred cCcCccCC
Q psy7826 203 GGSIEDIP 210 (213)
Q Consensus 203 ~~~~~~~p 210 (213)
+..|..++
T Consensus 68 gpPCQ~fS 75 (335)
T PF00145_consen 68 GPPCQGFS 75 (335)
T ss_dssp E---TTTS
T ss_pred ccCCceEe
Confidence 88877654
No 276
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=95.15 E-value=0.039 Score=43.67 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=45.2
Q ss_pred CEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCC-CC--CCCCcCEE
Q psy7826 124 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKG-YL--DEAPYDII 200 (213)
Q Consensus 124 ~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~-~~--~~~~fD~I 200 (213)
.++|||||=+......-... -.|+.+|+++ ..-.+.+.|..+. .+ +.+.||+|
T Consensus 53 lrlLEVGals~~N~~s~~~~----fdvt~IDLns--------------------~~~~I~qqDFm~rplp~~~~e~FdvI 108 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGW----FDVTRIDLNS--------------------QHPGILQQDFMERPLPKNESEKFDVI 108 (219)
T ss_pred ceEEeecccCCCCcccccCc----eeeEEeecCC--------------------CCCCceeeccccCCCCCCcccceeEE
Confidence 58999999765533322222 3699999984 2335677777642 22 35689999
Q ss_pred EEcCcCccCCCC
Q psy7826 201 HVGGSIEDIPEG 212 (213)
Q Consensus 201 i~~~~~~~~p~~ 212 (213)
.++.++..+|++
T Consensus 109 s~SLVLNfVP~p 120 (219)
T PF11968_consen 109 SLSLVLNFVPDP 120 (219)
T ss_pred EEEEEEeeCCCH
Confidence 999999999975
No 277
>KOG0024|consensus
Probab=95.11 E-value=0.07 Score=44.72 Aligned_cols=46 Identities=28% Similarity=0.486 Sum_probs=40.9
Q ss_pred hCCCCCEEEEEcCCc-cHHHHHHHHHcCCCCEEEEEeCChHHHHHHHH
Q psy7826 119 ELTEGKKVLDIGSGN-GYFTALLAWCVGKTGKVIGIEHIPQLVQRATH 165 (213)
Q Consensus 119 ~~~~~~~vLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 165 (213)
..++|.+||=+|||+ |..+...|+.+|. .+|+.+|+++.+++.|++
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA-~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGA-SDVVITDLVANRLELAKK 212 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCC-CcEEEeecCHHHHHHHHH
Confidence 478899999999997 7788888999864 599999999999999998
No 278
>KOG2782|consensus
Probab=95.10 E-value=0.013 Score=46.40 Aligned_cols=94 Identities=20% Similarity=0.128 Sum_probs=68.1
Q ss_pred HHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCC
Q psy7826 108 QQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDG 187 (213)
Q Consensus 108 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~ 187 (213)
+...+++.+ .+.++...+|+--|.|+.|..+.+.. ++.+++++|.+|-+.+.|+......- .+++..+.+.+
T Consensus 31 m~devl~~l--spv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s~el~-----~~~l~a~Lg~F 102 (303)
T KOG2782|consen 31 MLDEVLDIL--SPVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHSDELM-----HPTLKAVLGNF 102 (303)
T ss_pred ehhhHHHHc--CCCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhhHhhc-----chhHHHHHhhh
Confidence 345677777 57789999999999999999999985 77899999999999988887764321 12333333332
Q ss_pred C--------CCCCCCCCcCEEEEcCcCccCC
Q psy7826 188 R--------KGYLDEAPYDIIHVGGSIEDIP 210 (213)
Q Consensus 188 ~--------~~~~~~~~fD~Ii~~~~~~~~p 210 (213)
. ... .+..+|-|+++..+..+.
T Consensus 103 s~~~~l~~~~gl-~~~~vDGiLmDlGcSSMQ 132 (303)
T KOG2782|consen 103 SYIKSLIADTGL-LDVGVDGILMDLGCSSMQ 132 (303)
T ss_pred HHHHHHHHHhCC-CcCCcceEEeecCccccc
Confidence 2 122 235799999999887664
No 279
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.93 E-value=0.075 Score=44.76 Aligned_cols=72 Identities=21% Similarity=0.101 Sum_probs=51.7
Q ss_pred EEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC-CCCCcCEEEEcC
Q psy7826 126 VLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-DEAPYDIIHVGG 204 (213)
Q Consensus 126 vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~-~~~~fD~Ii~~~ 204 (213)
|+|+.||.|+.+..+.+. |- --+.++|+++.+.+..+.|.. . .+..+|+.+... ....+|+++.+.
T Consensus 1 vidLF~G~GG~~~Gl~~a-G~-~~~~a~e~~~~a~~ty~~N~~----------~-~~~~~Di~~~~~~~~~~~dvl~gg~ 67 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-GF-KCVFASEIDKYAQKTYEANFG----------N-KVPFGDITKISPSDIPDFDILLGGF 67 (315)
T ss_pred CEEEecCccHHHHHHHHc-CC-eEEEEEeCCHHHHHHHHHhCC----------C-CCCccChhhhhhhhCCCcCEEEecC
Confidence 589999999999998765 52 246789999999998888842 2 345567764221 123589999888
Q ss_pred cCccCC
Q psy7826 205 SIEDIP 210 (213)
Q Consensus 205 ~~~~~p 210 (213)
.+..++
T Consensus 68 PCq~fS 73 (315)
T TIGR00675 68 PCQPFS 73 (315)
T ss_pred CCcccc
Confidence 777654
No 280
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=94.93 E-value=0.026 Score=49.84 Aligned_cols=69 Identities=23% Similarity=0.286 Sum_probs=41.8
Q ss_pred EEEEEcCCccHHHHHHHHHcCCCCEEEE---EeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEE
Q psy7826 125 KVLDIGSGNGYFTALLAWCVGKTGKVIG---IEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIH 201 (213)
Q Consensus 125 ~vLDiG~G~G~~t~~la~~~~~~~~v~g---vD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii 201 (213)
.+||+|||+|+++.+|.++ + ..+.+ -|..+..++.|.++ | .+.+--..+.-..++++ ..||+|.
T Consensus 120 ~~LDvGcG~aSF~a~l~~r-~--V~t~s~a~~d~~~~qvqfaleR----G-----vpa~~~~~~s~rLPfp~-~~fDmvH 186 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLER-N--VTTMSFAPNDEHEAQVQFALER----G-----VPAMIGVLGSQRLPFPS-NAFDMVH 186 (506)
T ss_pred EEEeccceeehhHHHHhhC-C--ceEEEcccccCCchhhhhhhhc----C-----cchhhhhhccccccCCc-cchhhhh
Confidence 5899999999999999886 3 23322 25555566666544 2 22222222333344544 5899998
Q ss_pred EcCcC
Q psy7826 202 VGGSI 206 (213)
Q Consensus 202 ~~~~~ 206 (213)
+....
T Consensus 187 csrc~ 191 (506)
T PF03141_consen 187 CSRCL 191 (506)
T ss_pred ccccc
Confidence 76654
No 281
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.87 E-value=0.11 Score=43.93 Aligned_cols=75 Identities=23% Similarity=0.193 Sum_probs=55.2
Q ss_pred CEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCC--C-CcCEE
Q psy7826 124 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDE--A-PYDII 200 (213)
Q Consensus 124 ~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~--~-~fD~I 200 (213)
.+++|+.||.|+++..+... |- --+.++|+++.+++.-+.|.. ...+...|..+..... . .+|++
T Consensus 4 ~~~idLFsG~GG~~lGf~~a-gf-~~~~a~Eid~~a~~ty~~n~~----------~~~~~~~di~~~~~~~~~~~~~Dvl 71 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEA-GF-EIVFANEIDPPAVATYKANFP----------HGDIILGDIKELDGEALRKSDVDVL 71 (328)
T ss_pred ceEEeeccCCchHHHHHHhc-CC-eEEEEEecCHHHHHHHHHhCC----------CCceeechHhhcChhhccccCCCEE
Confidence 47999999999999888776 52 367889999999999888843 2456667766322211 1 68999
Q ss_pred EEcCcCccCC
Q psy7826 201 HVGGSIEDIP 210 (213)
Q Consensus 201 i~~~~~~~~p 210 (213)
+.+..|..+.
T Consensus 72 igGpPCQ~FS 81 (328)
T COG0270 72 IGGPPCQDFS 81 (328)
T ss_pred EeCCCCcchh
Confidence 9988877654
No 282
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.87 E-value=0.074 Score=45.31 Aligned_cols=75 Identities=23% Similarity=0.184 Sum_probs=57.7
Q ss_pred CCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC-CCCCcCEEE
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-DEAPYDIIH 201 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~-~~~~fD~Ii 201 (213)
..+|+|.=+|+|.-+..++.-.+. .+++.-|+|+.+++.+++|++.+. ..+...+..|+..... ....||+|=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~-~~v~lNDisp~Avelik~Nv~~N~-----~~~~~v~n~DAN~lm~~~~~~fd~ID 126 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGV-VKVVLNDISPKAVELIKENVRLNS-----GEDAEVINKDANALLHELHRAFDVID 126 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCc-cEEEEccCCHHHHHHHHHHHHhcC-----cccceeecchHHHHHHhcCCCccEEe
Confidence 568999999999999999888643 389999999999999999999884 3456666677652221 125688885
Q ss_pred Ec
Q psy7826 202 VG 203 (213)
Q Consensus 202 ~~ 203 (213)
+|
T Consensus 127 iD 128 (380)
T COG1867 127 ID 128 (380)
T ss_pred cC
Confidence 55
No 283
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.60 E-value=0.13 Score=41.29 Aligned_cols=82 Identities=17% Similarity=0.210 Sum_probs=55.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhC-CCCCccCCCeEEEEcCCCC-CC----CCCC
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISG-NPEFVKDGRIKFVLGDGRK-GY----LDEA 195 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-gl~~~~~~~v~~~~~d~~~-~~----~~~~ 195 (213)
++-++||+|.|.-..=-.+-.+. -.-+.+|.|+++..++.|+.++..+ ++ ...|+++...-.. .+ -.++
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~e-YgwrfvGseid~~sl~sA~~ii~~N~~l----~~~I~lr~qk~~~~if~giig~nE 152 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHE-YGWRFVGSEIDSQSLSSAKAIISANPGL----ERAIRLRRQKDSDAIFNGIIGKNE 152 (292)
T ss_pred CceEEEeeccCccccccccccee-ecceeecCccCHHHHHHHHHHHHcCcch----hhheeEEeccCccccccccccccc
Confidence 45679999988665433332221 2258899999999999999999877 54 3457766543321 11 1246
Q ss_pred CcCEEEEcCcCcc
Q psy7826 196 PYDIIHVGGSIED 208 (213)
Q Consensus 196 ~fD~Ii~~~~~~~ 208 (213)
.||.+++|..++.
T Consensus 153 ~yd~tlCNPPFh~ 165 (292)
T COG3129 153 RYDATLCNPPFHD 165 (292)
T ss_pred eeeeEecCCCcch
Confidence 7999999987654
No 284
>KOG1709|consensus
Probab=94.18 E-value=0.54 Score=37.39 Aligned_cols=79 Identities=20% Similarity=0.201 Sum_probs=58.2
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCC---CCCCCCCCCc
Q psy7826 121 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDG---RKGYLDEAPY 197 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~---~~~~~~~~~f 197 (213)
.+|.+||.+|-|-|.....+.+. .|. +=+-+|.+++.+++.++..=+. .+||.++.+-. ....++ +.|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~-~p~-~H~IiE~hp~V~krmr~~gw~e------k~nViil~g~WeDvl~~L~d-~~F 170 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA-PPD-EHWIIEAHPDVLKRMRDWGWRE------KENVIILEGRWEDVLNTLPD-KHF 170 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc-CCc-ceEEEecCHHHHHHHHhccccc------ccceEEEecchHhhhccccc-cCc
Confidence 57889999999999999999887 454 4556899999998888774222 46777776644 343444 579
Q ss_pred CEEEEcCcCcc
Q psy7826 198 DIIHVGGSIED 208 (213)
Q Consensus 198 D~Ii~~~~~~~ 208 (213)
|-|+-+.--++
T Consensus 171 DGI~yDTy~e~ 181 (271)
T KOG1709|consen 171 DGIYYDTYSEL 181 (271)
T ss_pred ceeEeechhhH
Confidence 99998865333
No 285
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=93.85 E-value=0.14 Score=40.00 Aligned_cols=39 Identities=36% Similarity=0.581 Sum_probs=34.8
Q ss_pred hCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCCh
Q psy7826 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIP 157 (213)
Q Consensus 119 ~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~ 157 (213)
.++++.+|+|+=.|.|++|..++..++++|.|+++-..+
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e 83 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAE 83 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchh
Confidence 478999999999999999999999999999999975443
No 286
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.85 E-value=0.33 Score=41.22 Aligned_cols=46 Identities=26% Similarity=0.348 Sum_probs=39.0
Q ss_pred hCCCCCEEEEEcCC-ccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHH
Q psy7826 119 ELTEGKKVLDIGSG-NGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN 166 (213)
Q Consensus 119 ~~~~~~~vLDiG~G-~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~ 166 (213)
..+||++|+=+|+| .|..+..+|+.++ .+|+++|.+++..+.|++.
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~l 209 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKL 209 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHh
Confidence 47889999888887 4557788888876 7999999999999998877
No 287
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=93.83 E-value=0.61 Score=41.89 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=63.9
Q ss_pred CCccCcHHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcC---CCCEEEEEeCChHHHHHHHHHHhhCCCCCcc
Q psy7826 100 GAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVG---KTGKVIGIEHIPQLVQRATHNVISGNPEFVK 176 (213)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~---~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~ 176 (213)
|.+.+-..+...+.+.+.+...++..+.|.+||+|.+.....+.++ ....++|-+....+...++.++.-.+..
T Consensus 195 g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~--- 271 (501)
T TIGR00497 195 GEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNID--- 271 (501)
T ss_pred ceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCC---
Confidence 3444444555555555532233667899999999998865544332 1136899999999999999987544420
Q ss_pred CCCeEEEEcCCCCC--CCCCCCcCEEEEcCcC
Q psy7826 177 DGRIKFVLGDGRKG--YLDEAPYDIIHVGGSI 206 (213)
Q Consensus 177 ~~~v~~~~~d~~~~--~~~~~~fD~Ii~~~~~ 206 (213)
.++.....+|.... .....+||.|+++...
T Consensus 272 ~~t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf 303 (501)
T TIGR00497 272 YANFNIINADTLTTKEWENENGFEVVVSNPPY 303 (501)
T ss_pred ccccCcccCCcCCCccccccccCCEEeecCCc
Confidence 12333444554421 1123469999988753
No 288
>PRK10458 DNA cytosine methylase; Provisional
Probab=93.61 E-value=0.45 Score=42.33 Aligned_cols=79 Identities=18% Similarity=0.071 Sum_probs=52.5
Q ss_pred CCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC----------
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL---------- 192 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~---------- 192 (213)
..+++|+.||.|+++..+-.. |. --|.++|+++.+.+.-+.|... .+......+|+.....
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G~-~~v~a~Eid~~A~~TY~~N~~~-------~p~~~~~~~DI~~i~~~~~~~~~~~~ 158 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-GG-QCVFTSEWNKHAVRTYKANWYC-------DPATHRFNEDIRDITLSHKEGVSDEE 158 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-CC-EEEEEEechHHHHHHHHHHcCC-------CCccceeccChhhCccccccccchhh
Confidence 458999999999999998665 53 2678899999998888887521 1223344455542110
Q ss_pred -------CCCCcCEEEEcCcCccCC
Q psy7826 193 -------DEAPYDIIHVGGSIEDIP 210 (213)
Q Consensus 193 -------~~~~fD~Ii~~~~~~~~p 210 (213)
....+|+++.+..|..++
T Consensus 159 ~~~~~~~~~p~~DvL~gGpPCQ~FS 183 (467)
T PRK10458 159 AAEHIRQHIPDHDVLLAGFPCQPFS 183 (467)
T ss_pred hhhhhhccCCCCCEEEEcCCCCccc
Confidence 112479888887776543
No 289
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=93.30 E-value=0.32 Score=36.07 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=26.8
Q ss_pred EEcCCcc--HHHHHHH-HHcCCCCEEEEEeCChHHHHHHHHH
Q psy7826 128 DIGSGNG--YFTALLA-WCVGKTGKVIGIEHIPQLVQRATHN 166 (213)
Q Consensus 128 DiG~G~G--~~t~~la-~~~~~~~~v~gvD~s~~~l~~a~~~ 166 (213)
|+||..| ..+..+. +..++.++|+++|.++..++..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 6665554 2446778999999999999999999
No 290
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.03 E-value=0.42 Score=40.82 Aligned_cols=47 Identities=26% Similarity=0.407 Sum_probs=38.7
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHH
Q psy7826 120 LTEGKKVLDIGSGN-GYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNV 167 (213)
Q Consensus 120 ~~~~~~vLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~ 167 (213)
..++.+|+=+|||+ |..+..+++..|. .+|+.+|.++.+++.|++..
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga-~~Viv~d~~~~Rl~~A~~~~ 213 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGA-SVVIVVDRSPERLELAKEAG 213 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHHHHHhC
Confidence 34555999999997 7777888888754 59999999999999999853
No 291
>KOG3987|consensus
Probab=92.93 E-value=0.031 Score=43.98 Aligned_cols=41 Identities=24% Similarity=0.286 Sum_probs=35.4
Q ss_pred CCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHH
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN 166 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~ 166 (213)
..++||+|+|-|-.|..++..+ ..|++.|.|..|..+.++.
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~kk 153 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKKK 153 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhhc
Confidence 4689999999999999998877 5799999999988776654
No 292
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=92.91 E-value=0.45 Score=37.12 Aligned_cols=72 Identities=24% Similarity=0.257 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHc---CCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEE
Q psy7826 106 PFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCV---GKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKF 182 (213)
Q Consensus 106 ~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~---~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~ 182 (213)
|.....+.+++- ..+ ...|+|.|...|+.+.++|..+ |...+|+++|++-..+..+... .+.|.|
T Consensus 55 p~D~~~yQellw-~~~-P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e----------~p~i~f 122 (237)
T COG3510 55 PSDMWNYQELLW-ELQ-PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE----------VPDILF 122 (237)
T ss_pred HHHHHHHHHHHH-hcC-CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc----------CCCeEE
Confidence 433333444442 234 4589999999999988887654 4445899999987766554443 357788
Q ss_pred EEcCCCC
Q psy7826 183 VLGDGRK 189 (213)
Q Consensus 183 ~~~d~~~ 189 (213)
+.++..+
T Consensus 123 ~egss~d 129 (237)
T COG3510 123 IEGSSTD 129 (237)
T ss_pred EeCCCCC
Confidence 8887663
No 293
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=92.86 E-value=0.37 Score=39.70 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=56.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCC--CCCcCE
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLD--EAPYDI 199 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~--~~~fD~ 199 (213)
.|+.|+-+| ---..+..++-. +-..+|.-+|+++..++...+-++..| ..|++...-|+..++|+ ...||+
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt-~mpk~iaVvDIDERli~fi~k~aee~g-----~~~ie~~~~Dlr~plpe~~~~kFDv 224 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALT-GMPKRIAVVDIDERLIKFIEKVAEELG-----YNNIEAFVFDLRNPLPEDLKRKFDV 224 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhc-CCCceEEEEechHHHHHHHHHHHHHhC-----ccchhheeehhcccChHHHHhhCCe
Confidence 466799988 222233333322 323488889999999999999999999 68899999999987775 357999
Q ss_pred EEEcC
Q psy7826 200 IHVGG 204 (213)
Q Consensus 200 Ii~~~ 204 (213)
.+.+.
T Consensus 225 fiTDP 229 (354)
T COG1568 225 FITDP 229 (354)
T ss_pred eecCc
Confidence 88764
No 294
>KOG2078|consensus
Probab=92.73 E-value=0.1 Score=45.24 Aligned_cols=64 Identities=20% Similarity=0.231 Sum_probs=54.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCC
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 189 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~ 189 (213)
.++|+.|-|++||-|-++..++.. + ++|++.|.++++++..+.++..+.+ +..+|++..-|+..
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK-~--crV~aNDLNpesik~Lk~ni~lNkv---~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK-G--CRVYANDLNPESIKWLKANIKLNKV---DPSAIEIFNMDAKD 310 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc-C--cEEEecCCCHHHHHHHHHhcccccc---chhheeeecccHHH
Confidence 688999999999999999998887 3 8999999999999999999887764 22348888888764
No 295
>KOG2352|consensus
Probab=92.71 E-value=0.87 Score=40.31 Aligned_cols=84 Identities=18% Similarity=0.271 Sum_probs=64.3
Q ss_pred hCCCCC-EEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCc
Q psy7826 119 ELTEGK-KVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPY 197 (213)
Q Consensus 119 ~~~~~~-~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~f 197 (213)
...+.. ++|-+|||---++..+-+- | ...|+.+|+|+-.++.....-.+. .+-..+...|......++++|
T Consensus 44 ~~~p~~~~~l~lGCGNS~l~e~ly~~-G-~~dI~~iD~S~V~V~~m~~~~~~~------~~~~~~~~~d~~~l~fedESF 115 (482)
T KOG2352|consen 44 YLSPSDFKILQLGCGNSELSEHLYKN-G-FEDITNIDSSSVVVAAMQVRNAKE------RPEMQMVEMDMDQLVFEDESF 115 (482)
T ss_pred hhchhhceeEeecCCCCHHHHHHHhc-C-CCCceeccccHHHHHHHHhccccC------CcceEEEEecchhccCCCcce
Confidence 345556 9999999999888777664 3 348999999999998877664321 346789999988555566799
Q ss_pred CEEEEcCcCccCC
Q psy7826 198 DIIHVGGSIEDIP 210 (213)
Q Consensus 198 D~Ii~~~~~~~~p 210 (213)
|+|+.-+.+.++-
T Consensus 116 diVIdkGtlDal~ 128 (482)
T KOG2352|consen 116 DIVIDKGTLDALF 128 (482)
T ss_pred eEEEecCcccccc
Confidence 9999988877654
No 296
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=92.56 E-value=1.1 Score=35.60 Aligned_cols=82 Identities=18% Similarity=0.133 Sum_probs=56.0
Q ss_pred CCCCEEEEEcCCccH--HHHHH--HHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCC-CCCCCCC
Q psy7826 121 TEGKKVLDIGSGNGY--FTALL--AWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR-KGYLDEA 195 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~--~t~~l--a~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~-~~~~~~~ 195 (213)
.....+++++|+-|. .|..| |.+ ...++++.+-.++..+...++.+...++ .+.++|+.++.. +..+...
T Consensus 40 ~nAkliVe~~s~g~~~~ttiaLaaAAr-~TgGR~vCIvp~~~~~~~~~~~l~~~~~----~~~vEfvvg~~~e~~~~~~~ 114 (218)
T PF07279_consen 40 WNAKLIVEAWSSGGAISTTIALAAAAR-QTGGRHVCIVPDEQSLSEYKKALGEAGL----SDVVEFVVGEAPEEVMPGLK 114 (218)
T ss_pred ccceEEEEEecCCCchHhHHHHHHHHH-hcCCeEEEEcCChhhHHHHHHHHhhccc----cccceEEecCCHHHHHhhcc
Confidence 345678999766443 23333 333 2457999999998888888999888775 455799999864 2233334
Q ss_pred CcCEEEEcCcCc
Q psy7826 196 PYDIIHVGGSIE 207 (213)
Q Consensus 196 ~fD~Ii~~~~~~ 207 (213)
..|.+++|.-..
T Consensus 115 ~iDF~vVDc~~~ 126 (218)
T PF07279_consen 115 GIDFVVVDCKRE 126 (218)
T ss_pred CCCEEEEeCCch
Confidence 689999987543
No 297
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=92.09 E-value=2.1 Score=35.23 Aligned_cols=41 Identities=27% Similarity=0.161 Sum_probs=35.0
Q ss_pred CCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHH
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN 166 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~ 166 (213)
..+||--|||.|.++..+|.+ | ..+.|.|.|-.|+-..+-.
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~-G--~~~~gnE~S~~Mll~s~fi 97 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKL-G--YAVQGNEFSYFMLLASNFI 97 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhc-c--ceEEEEEchHHHHHHHHHH
Confidence 468999999999999999998 5 6899999999997655543
No 298
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=92.08 E-value=0.72 Score=37.76 Aligned_cols=44 Identities=14% Similarity=0.282 Sum_probs=34.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcC----CCCEEEEEeCChHHHHHH
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVG----KTGKVIGIEHIPQLVQRA 163 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~----~~~~v~gvD~s~~~l~~a 163 (213)
+.+...++|+|||.|.+|.++++.+. +...++.+|....+.+.-
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D 63 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKAD 63 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccch
Confidence 45677899999999999999999873 235889999877666443
No 299
>KOG3201|consensus
Probab=91.93 E-value=0.042 Score=41.55 Aligned_cols=82 Identities=15% Similarity=0.140 Sum_probs=52.5
Q ss_pred CCCEEEEEcCC-ccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCC--CCCCCCCCcC
Q psy7826 122 EGKKVLDIGSG-NGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR--KGYLDEAPYD 198 (213)
Q Consensus 122 ~~~~vLDiG~G-~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~--~~~~~~~~fD 198 (213)
.|.+|||+|.| +|..+..+|... +...|.-.|-++..++..++-...+-.+. ..++..+..+.. ........||
T Consensus 29 rg~~ilelgggft~laglmia~~a-~~~~v~ltdgne~svrnv~ki~~~n~~s~--~tsc~vlrw~~~~aqsq~eq~tFD 105 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKA-PDSSVWLTDGNEESVRNVEKIRNSNMASS--LTSCCVLRWLIWGAQSQQEQHTFD 105 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeec-CCceEEEecCCHHHHHHHHHHHhcccccc--cceehhhHHHHhhhHHHHhhCccc
Confidence 46789999999 455556667664 66789999999999999888765542100 233433333322 1112234799
Q ss_pred EEEEcCcC
Q psy7826 199 IIHVGGSI 206 (213)
Q Consensus 199 ~Ii~~~~~ 206 (213)
.|++...+
T Consensus 106 iIlaADCl 113 (201)
T KOG3201|consen 106 IILAADCL 113 (201)
T ss_pred EEEeccch
Confidence 99986543
No 300
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=91.57 E-value=2.1 Score=34.83 Aligned_cols=65 Identities=17% Similarity=0.290 Sum_probs=47.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCC---CEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCC
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKT---GKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR 188 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~---~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~ 188 (213)
.-.+...+|+|+|+-.+++.+...+.+. .+.+.+|+|...++...+.+.+.-. .-.|.-+++|..
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~----~l~v~~l~~~~~ 143 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP----GLEVNALCGDYE 143 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC----CCeEeehhhhHH
Confidence 3446789999999999999998876432 4789999999999887777654321 224566677765
No 301
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=91.44 E-value=0.38 Score=33.86 Aligned_cols=33 Identities=27% Similarity=0.361 Sum_probs=24.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCCh
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIP 157 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~ 157 (213)
+....+|+|||.|.+.-.|.+. | .+-+|+|.-.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E-G--y~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE-G--YPGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC-C--CCcccccccc
Confidence 3457999999999998777664 4 4678888643
No 302
>KOG1253|consensus
Probab=90.72 E-value=0.15 Score=45.05 Aligned_cols=81 Identities=15% Similarity=0.085 Sum_probs=63.7
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCC----CCCCCC
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK----GYLDEA 195 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~----~~~~~~ 195 (213)
-.++.+|||.=|++|.-++..|+.++.-.+|++.|.++..++..++|.+.++. .+.++....|+.. ......
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v----~~ive~~~~DA~~lM~~~~~~~~ 182 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGV----EDIVEPHHSDANVLMYEHPMVAK 182 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCc----hhhcccccchHHHHHHhcccccc
Confidence 45667899999999999999999886556899999999999999999998874 4557777788751 111235
Q ss_pred CcCEEEEcC
Q psy7826 196 PYDIIHVGG 204 (213)
Q Consensus 196 ~fD~Ii~~~ 204 (213)
.||+|=+|.
T Consensus 183 ~FDvIDLDP 191 (525)
T KOG1253|consen 183 FFDVIDLDP 191 (525)
T ss_pred ccceEecCC
Confidence 799997663
No 303
>KOG2793|consensus
Probab=90.32 E-value=1.5 Score=35.61 Aligned_cols=41 Identities=29% Similarity=0.427 Sum_probs=27.8
Q ss_pred CCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHH
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN 166 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~ 166 (213)
..+||++|+|+|..++..|...+ ..+.--|.. ..+.....+
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~--~~v~ltD~~-~~~~~L~~~ 127 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLG--AEVVLTDLP-KVVENLKFN 127 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhc--ceeccCCch-hhHHHHHHh
Confidence 45799999999988888777643 466666654 444444444
No 304
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=89.81 E-value=3.2 Score=33.21 Aligned_cols=79 Identities=15% Similarity=0.116 Sum_probs=54.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC--------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-------- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~-------- 192 (213)
+++++|=.| |+|..+..+++.+-. ..+|+.++.+...++...+.+...+ .++.++.+|+.+...
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~------~~~~~~~~Dl~d~~~i~~~~~~~ 83 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG------IDALWIAADVADEADIERLAEET 83 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEEccCCCHHHHHHHHHHH
Confidence 467888888 567777777766532 2489999999888777776665443 367889999874210
Q ss_pred --CCCCcCEEEEcCcCc
Q psy7826 193 --DEAPYDIIHVGGSIE 207 (213)
Q Consensus 193 --~~~~fD~Ii~~~~~~ 207 (213)
..+++|.|+.+++..
T Consensus 84 ~~~~~~id~vi~~ag~~ 100 (259)
T PRK08213 84 LERFGHVDILVNNAGAT 100 (259)
T ss_pred HHHhCCCCEEEECCCCC
Confidence 013689999988753
No 305
>KOG2352|consensus
Probab=89.21 E-value=0.27 Score=43.40 Aligned_cols=79 Identities=22% Similarity=0.275 Sum_probs=57.8
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCC-------CCCC
Q psy7826 121 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK-------GYLD 193 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~-------~~~~ 193 (213)
..+.++|=+|-|.|.+...+-..+ +...++++++++.+++.++.++.... ..+..+...|... .-..
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f~q-----~~r~~V~i~dGl~~~~~~~k~~~~ 367 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGFMQ-----SDRNKVHIADGLDFLQRTAKSQQE 367 (482)
T ss_pred cccCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhhchhh-----hhhhhhhHhhchHHHHHHhhcccc
Confidence 345678999999999999988876 66799999999999999999975433 2244555566541 1123
Q ss_pred CCCcCEEEEcCc
Q psy7826 194 EAPYDIIHVGGS 205 (213)
Q Consensus 194 ~~~fD~Ii~~~~ 205 (213)
...||+++.+..
T Consensus 368 ~~~~dvl~~dvd 379 (482)
T KOG2352|consen 368 DICPDVLMVDVD 379 (482)
T ss_pred ccCCcEEEEECC
Confidence 457999998754
No 306
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=89.01 E-value=1.6 Score=37.06 Aligned_cols=90 Identities=11% Similarity=-0.005 Sum_probs=43.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHc--------C-------CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCC--eEEEE
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCV--------G-------KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR--IKFVL 184 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~--------~-------~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~--v~~~~ 184 (213)
..-+|.|+||.+|.-|..+...+ . |.-+|+--|.-..=....=+.+....-+.....+ +..+.
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 34589999999999887664321 0 1236777785443322222222111000000123 34555
Q ss_pred cCCCCCCCCCCCcCEEEEcCcCccCCC
Q psy7826 185 GDGRKGYLDEAPYDIIHVGGSIEDIPE 211 (213)
Q Consensus 185 ~d~~~~~~~~~~fD~Ii~~~~~~~~p~ 211 (213)
+.......+.++.|++++..++|+++.
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~alHWLS~ 122 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYALHWLSQ 122 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES-TTB-SS
T ss_pred chhhhccCCCCceEEEEEechhhhccc
Confidence 666655555679999999999998864
No 307
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=88.87 E-value=0.98 Score=31.59 Aligned_cols=62 Identities=18% Similarity=0.220 Sum_probs=42.5
Q ss_pred CCccHHHHHHHHHcCCCC-EEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC----CCCCCcCEEEEcC
Q psy7826 131 SGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY----LDEAPYDIIHVGG 204 (213)
Q Consensus 131 ~G~G~~t~~la~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~----~~~~~fD~Ii~~~ 204 (213)
||.|..+..+++.+...+ +++.+|.+++.++.+++. .+.++.+|..+.. ......|.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~------------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE------------GVEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT------------TSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc------------ccccccccchhhhHHhhcCccccCEEEEcc
Confidence 677888888888775555 899999999998777655 2578999987321 1123577777653
No 308
>PTZ00357 methyltransferase; Provisional
Probab=88.69 E-value=2.6 Score=39.27 Aligned_cols=78 Identities=14% Similarity=0.136 Sum_probs=47.1
Q ss_pred EEEEEcCCccHHHHHHH---HHcCCCCEEEEEeCChHHHHHHHHHH---hhCCC-CCccCCCeEEEEcCCCCCCCC----
Q psy7826 125 KVLDIGSGNGYFTALLA---WCVGKTGKVIGIEHIPQLVQRATHNV---ISGNP-EFVKDGRIKFVLGDGRKGYLD---- 193 (213)
Q Consensus 125 ~vLDiG~G~G~~t~~la---~~~~~~~~v~gvD~s~~~l~~a~~~~---~~~gl-~~~~~~~v~~~~~d~~~~~~~---- 193 (213)
.|+-+|+|.|-+-.... +..+-+.+|++||.++........+. ..+.- ...-.+.|+++..|......+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 58999999998764443 33344568999999966543433332 23310 000013589999999753211
Q ss_pred -------CCCcCEEEE
Q psy7826 194 -------EAPYDIIHV 202 (213)
Q Consensus 194 -------~~~fD~Ii~ 202 (213)
.+++|+||+
T Consensus 783 s~~~P~~~gKaDIVVS 798 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVS 798 (1072)
T ss_pred cccccccccccceehH
Confidence 126899987
No 309
>PRK07904 short chain dehydrogenase; Provisional
Probab=88.65 E-value=2.8 Score=33.71 Aligned_cols=82 Identities=10% Similarity=0.032 Sum_probs=52.6
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCC--CEEEEEeCChHH-HHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC-----
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKT--GKVIGIEHIPQL-VQRATHNVISGNPEFVKDGRIKFVLGDGRKGY----- 191 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~--~~v~gvD~s~~~-l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~----- 191 (213)
...+.+||-.|+ +|+.+..+++.+-.. .+|+.++.+++. ++.+.+.+...+ ..+++++.+|+.+..
T Consensus 5 ~~~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~-----~~~v~~~~~D~~~~~~~~~~ 78 (253)
T PRK07904 5 VGNPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG-----ASSVEVIDFDALDTDSHPKV 78 (253)
T ss_pred cCCCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC-----CCceEEEEecCCChHHHHHH
Confidence 345668898888 456666666653222 488898888764 666555555544 347889999986321
Q ss_pred C----CCCCcCEEEEcCcCc
Q psy7826 192 L----DEAPYDIIHVGGSIE 207 (213)
Q Consensus 192 ~----~~~~fD~Ii~~~~~~ 207 (213)
. ..+..|+++.+.+..
T Consensus 79 ~~~~~~~g~id~li~~ag~~ 98 (253)
T PRK07904 79 IDAAFAGGDVDVAIVAFGLL 98 (253)
T ss_pred HHHHHhcCCCCEEEEeeecC
Confidence 0 114689888877653
No 310
>KOG0822|consensus
Probab=88.47 E-value=1.6 Score=39.26 Aligned_cols=73 Identities=22% Similarity=0.255 Sum_probs=50.9
Q ss_pred CEEEEEcCCccHHHHHH---HHHcCCCCEEEEEeCChHHHHHHHH-HHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCE
Q psy7826 124 KKVLDIGSGNGYFTALL---AWCVGKTGKVIGIEHIPQLVQRATH-NVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDI 199 (213)
Q Consensus 124 ~~vLDiG~G~G~~t~~l---a~~~~~~~~v~gvD~s~~~l~~a~~-~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~ 199 (213)
..|+-+|+|.|-+.... ++....+.+++++|.++.++-..+. +.+.+ ..+|+++.+|...-.++..+.|+
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W------~~~Vtii~~DMR~w~ap~eq~DI 442 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECW------DNRVTIISSDMRKWNAPREQADI 442 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhh------cCeeEEEeccccccCCchhhccc
Confidence 35789999999876544 3333344689999999999866554 34444 35899999999863333356788
Q ss_pred EEE
Q psy7826 200 IHV 202 (213)
Q Consensus 200 Ii~ 202 (213)
+++
T Consensus 443 ~VS 445 (649)
T KOG0822|consen 443 IVS 445 (649)
T ss_pred hHH
Confidence 765
No 311
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=88.37 E-value=1.8 Score=35.58 Aligned_cols=70 Identities=20% Similarity=0.253 Sum_probs=50.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCE
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDI 199 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~ 199 (213)
+.+++...|+|+.+|+.|-.+-++ + -.|+++|--+-+ .++-. ...|+....|....-|.-...|-
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr-~--m~V~aVDng~ma-----~sL~d-------tg~v~h~r~DGfk~~P~r~~idW 273 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR-N--MRVYAVDNGPMA-----QSLMD-------TGQVTHLREDGFKFRPTRSNIDW 273 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc-c--eEEEEeccchhh-----hhhhc-------ccceeeeeccCcccccCCCCCce
Confidence 568999999999999999888776 2 699999965321 22222 34688888888754443346788
Q ss_pred EEEcC
Q psy7826 200 IHVGG 204 (213)
Q Consensus 200 Ii~~~ 204 (213)
.+++-
T Consensus 274 mVCDm 278 (358)
T COG2933 274 MVCDM 278 (358)
T ss_pred EEeeh
Confidence 87775
No 312
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=87.62 E-value=5.1 Score=31.75 Aligned_cols=82 Identities=10% Similarity=0.023 Sum_probs=54.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC-------
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY------- 191 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~------- 191 (213)
..+++++|=.|+ +|..+..+++.+-. ..+|++++.+...++...+.+...+ ..++.++.+|+....
T Consensus 9 ~~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~d~~~~~~~~~~~~ 82 (247)
T PRK08945 9 LLKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAG-----GPQPAIIPLDLLTATPQNYQQL 82 (247)
T ss_pred ccCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcC-----CCCceEEEecccCCCHHHHHHH
Confidence 346778999995 66666666655422 2489999999887777666666544 346777777774210
Q ss_pred -----CCCCCcCEEEEcCcCc
Q psy7826 192 -----LDEAPYDIIHVGGSIE 207 (213)
Q Consensus 192 -----~~~~~fD~Ii~~~~~~ 207 (213)
...++.|.|+.+++..
T Consensus 83 ~~~~~~~~~~id~vi~~Ag~~ 103 (247)
T PRK08945 83 ADTIEEQFGRLDGVLHNAGLL 103 (247)
T ss_pred HHHHHHHhCCCCEEEECCccc
Confidence 1123689999988653
No 313
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=87.21 E-value=1.9 Score=37.15 Aligned_cols=47 Identities=32% Similarity=0.519 Sum_probs=39.2
Q ss_pred hCCCCCEEEEEcCCc-cHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHH
Q psy7826 119 ELTEGKKVLDIGSGN-GYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN 166 (213)
Q Consensus 119 ~~~~~~~vLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~ 166 (213)
.+.++.+||..|||+ |..+..+|+..+ ..+++++|.++++++.+++.
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSH 228 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHc
Confidence 467888999999988 888899999874 23699999999998888765
No 314
>PRK06172 short chain dehydrogenase; Provisional
Probab=87.14 E-value=6.6 Score=31.19 Aligned_cols=79 Identities=18% Similarity=0.146 Sum_probs=52.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC-----C---
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-----L--- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~-----~--- 192 (213)
.++++|=.|++ |+.+..+++.+.. ..+|+.++.++..++...+.+...+ .++.++.+|+.+.. .
T Consensus 6 ~~k~ilItGas-~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~i~~~~~~~ 78 (253)
T PRK06172 6 SGKVALVTGGA-AGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG------GEALFVACDVTRDAEVKALVEQT 78 (253)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC------CceEEEEcCCCCHHHHHHHHHHH
Confidence 35688888864 5555555554422 2589999999888777666665543 36888999987321 0
Q ss_pred --CCCCcCEEEEcCcCc
Q psy7826 193 --DEAPYDIIHVGGSIE 207 (213)
Q Consensus 193 --~~~~fD~Ii~~~~~~ 207 (213)
..+++|.|+.+++..
T Consensus 79 ~~~~g~id~li~~ag~~ 95 (253)
T PRK06172 79 IAAYGRLDYAFNNAGIE 95 (253)
T ss_pred HHHhCCCCEEEECCCCC
Confidence 113679999988753
No 315
>PRK08339 short chain dehydrogenase; Provisional
Probab=86.98 E-value=7.3 Score=31.45 Aligned_cols=80 Identities=16% Similarity=0.173 Sum_probs=51.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC---------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY--------- 191 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~--------- 191 (213)
.++++|=.|++.|. +..+++.+- ...+|+.++.++..++.+.+.+.... ..++.++.+|+.+..
T Consensus 7 ~~k~~lItGas~gI-G~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~i~~~~~~~ 80 (263)
T PRK08339 7 SGKLAFTTASSKGI-GFGVARVLARAGADVILLSRNEENLKKAREKIKSES-----NVDVSYIVADLTKREDLERTVKEL 80 (263)
T ss_pred CCCEEEEeCCCCcH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-----CCceEEEEecCCCHHHHHHHHHHH
Confidence 46678888876554 444444332 22589999999888877776654432 236888899987321
Q ss_pred CCCCCcCEEEEcCcCc
Q psy7826 192 LDEAPYDIIHVGGSIE 207 (213)
Q Consensus 192 ~~~~~fD~Ii~~~~~~ 207 (213)
...+..|+++.+++..
T Consensus 81 ~~~g~iD~lv~nag~~ 96 (263)
T PRK08339 81 KNIGEPDIFFFSTGGP 96 (263)
T ss_pred HhhCCCcEEEECCCCC
Confidence 0114689999888754
No 316
>KOG1201|consensus
Probab=86.96 E-value=4.4 Score=33.78 Aligned_cols=78 Identities=19% Similarity=0.113 Sum_probs=58.4
Q ss_pred CCCEEEEEcCCccH---HHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC-------
Q psy7826 122 EGKKVLDIGSGNGY---FTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY------- 191 (213)
Q Consensus 122 ~~~~vLDiG~G~G~---~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~------- 191 (213)
.|+.||=-|.|.|. .+..+|++ + .+++-.|+++...+...+.+++.| .+....+|..+..
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r-g--~~~vl~Din~~~~~etv~~~~~~g-------~~~~y~cdis~~eei~~~a~ 106 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR-G--AKLVLWDINKQGNEETVKEIRKIG-------EAKAYTCDISDREEIYRLAK 106 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh-C--CeEEEEeccccchHHHHHHHHhcC-------ceeEEEecCCCHHHHHHHHH
Confidence 47789999999885 44555555 3 578889999999998888887755 6888899987321
Q ss_pred ---CCCCCcCEEEEcCcCccC
Q psy7826 192 ---LDEAPYDIIHVGGSIEDI 209 (213)
Q Consensus 192 ---~~~~~fD~Ii~~~~~~~~ 209 (213)
.+.+..|+++.|+++-+.
T Consensus 107 ~Vk~e~G~V~ILVNNAGI~~~ 127 (300)
T KOG1201|consen 107 KVKKEVGDVDILVNNAGIVTG 127 (300)
T ss_pred HHHHhcCCceEEEeccccccC
Confidence 124578999999987553
No 317
>KOG2920|consensus
Probab=86.94 E-value=0.49 Score=38.97 Aligned_cols=40 Identities=20% Similarity=0.220 Sum_probs=31.7
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHH
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQ 161 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~ 161 (213)
...+++|||+|||+|......... +. ..++..|.+...++
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~-~~-~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVK-GA-VSVHFQDFNAEVLR 153 (282)
T ss_pred EecCceeEecCCcccccchhhhhh-cc-ceeeeEecchhhee
Confidence 357889999999999999887766 32 57888888877763
No 318
>PRK06940 short chain dehydrogenase; Provisional
Probab=86.91 E-value=5 Score=32.69 Aligned_cols=76 Identities=16% Similarity=0.075 Sum_probs=51.7
Q ss_pred CEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC---------CCC
Q psy7826 124 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY---------LDE 194 (213)
Q Consensus 124 ~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~---------~~~ 194 (213)
+.+|=.|+ |+++..+++.+....+|+.++.++..++...+.+...+ .++.++.+|+.+.. ...
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dv~d~~~i~~~~~~~~~~ 74 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG------FDVSTQEVDVSSRESVKALAATAQTL 74 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEEeecCCHHHHHHHHHHHHhc
Confidence 35566665 57888888887544689999998877766665555433 36778888986321 112
Q ss_pred CCcCEEEEcCcCc
Q psy7826 195 APYDIIHVGGSIE 207 (213)
Q Consensus 195 ~~fD~Ii~~~~~~ 207 (213)
+.+|.++.+++..
T Consensus 75 g~id~li~nAG~~ 87 (275)
T PRK06940 75 GPVTGLVHTAGVS 87 (275)
T ss_pred CCCCEEEECCCcC
Confidence 4689999998764
No 319
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=86.75 E-value=0.39 Score=40.89 Aligned_cols=77 Identities=16% Similarity=0.094 Sum_probs=43.8
Q ss_pred CCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCC---CCCCCCCCcCE
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR---KGYLDEAPYDI 199 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~---~~~~~~~~fD~ 199 (213)
.+++||+|.|+|.-...+-..++.-.+++-++.|+..-+.......... .....+...|+. ..++....|++
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~-----t~~td~r~s~vt~dRl~lp~ad~ytl 188 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS-----TEKTDWRASDVTEDRLSLPAADLYTL 188 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc-----cccCCCCCCccchhccCCCccceeeh
Confidence 4579999999998877776666322366777877655444333322222 222334444444 22333446777
Q ss_pred EEEcC
Q psy7826 200 IHVGG 204 (213)
Q Consensus 200 Ii~~~ 204 (213)
+++..
T Consensus 189 ~i~~~ 193 (484)
T COG5459 189 AIVLD 193 (484)
T ss_pred hhhhh
Confidence 76654
No 320
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=86.66 E-value=2.4 Score=36.80 Aligned_cols=89 Identities=10% Similarity=-0.057 Sum_probs=46.4
Q ss_pred CCEEEEEcCCccHHHHHHHHH--------c------CCCCEEEEEeCChHHHHHHHHHHhhC---------CCCCccCCC
Q psy7826 123 GKKVLDIGSGNGYFTALLAWC--------V------GKTGKVIGIEHIPQLVQRATHNVISG---------NPEFVKDGR 179 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~--------~------~~~~~v~gvD~s~~~l~~a~~~~~~~---------gl~~~~~~~ 179 (213)
..+|+|+|||+|..|..+... + .|+-+|+--|.-..=....=+.+... .+...+..+
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 458999999999887655321 1 12346666665432222222221100 000000111
Q ss_pred --eEEEEcCCCCCCCCCCCcCEEEEcCcCccCCC
Q psy7826 180 --IKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211 (213)
Q Consensus 180 --v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~p~ 211 (213)
+.-+.+.......+..+.+++++..++|+++.
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~ 177 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQ 177 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceeccc
Confidence 22233444443444568999999999998764
No 321
>PRK05867 short chain dehydrogenase; Provisional
Probab=86.46 E-value=6.5 Score=31.33 Aligned_cols=80 Identities=16% Similarity=0.158 Sum_probs=52.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC--------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-------- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~-------- 192 (213)
.++++|=.|++.| .+..+++.+- ...+|+.++.+++.++...+.+...+ .++.++.+|+.+...
T Consensus 8 ~~k~vlVtGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~D~~~~~~~~~~~~~~ 80 (253)
T PRK05867 8 HGKRALITGASTG-IGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG------GKVVPVCCDVSQHQQVTSMLDQV 80 (253)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC------CeEEEEEccCCCHHHHHHHHHHH
Confidence 4678898887554 4445544432 22589999999888877766665543 357788889873210
Q ss_pred --CCCCcCEEEEcCcCcc
Q psy7826 193 --DEAPYDIIHVGGSIED 208 (213)
Q Consensus 193 --~~~~fD~Ii~~~~~~~ 208 (213)
..++.|.++.+++...
T Consensus 81 ~~~~g~id~lv~~ag~~~ 98 (253)
T PRK05867 81 TAELGGIDIAVCNAGIIT 98 (253)
T ss_pred HHHhCCCCEEEECCCCCC
Confidence 1146899999987644
No 322
>PRK05599 hypothetical protein; Provisional
Probab=86.36 E-value=5.8 Score=31.65 Aligned_cols=77 Identities=12% Similarity=0.039 Sum_probs=51.3
Q ss_pred EEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC----------CCC
Q psy7826 125 KVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY----------LDE 194 (213)
Q Consensus 125 ~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~----------~~~ 194 (213)
.+|=.|++. +++..+++.+....+|+.++.+++.++...+.+...+ ...+.++.+|+.+.. ...
T Consensus 2 ~vlItGas~-GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 75 (246)
T PRK05599 2 SILILGGTS-DIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRG-----ATSVHVLSFDAQDLDTHRELVKQTQELA 75 (246)
T ss_pred eEEEEeCcc-HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcc-----CCceEEEEcccCCHHHHHHHHHHHHHhc
Confidence 467677754 4555666555444688888988888887777766544 335778888887321 112
Q ss_pred CCcCEEEEcCcCc
Q psy7826 195 APYDIIHVGGSIE 207 (213)
Q Consensus 195 ~~fD~Ii~~~~~~ 207 (213)
+..|+++.+++..
T Consensus 76 g~id~lv~nag~~ 88 (246)
T PRK05599 76 GEISLAVVAFGIL 88 (246)
T ss_pred CCCCEEEEecCcC
Confidence 4689999888754
No 323
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.69 E-value=6.7 Score=30.96 Aligned_cols=78 Identities=12% Similarity=0.011 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC--------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-------- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~-------- 192 (213)
++.++|=.|+ +|+.+..+++.+. ...+|+.++.++..++.+.+.+...+ .++.++..|+.+...
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~ 76 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG------TEVRGYAANVTDEEDVEATFAQI 76 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CceEEEEcCCCCHHHHHHHHHHH
Confidence 3568888886 4555656655442 22589999999887777666655443 367888889763210
Q ss_pred --CCCCcCEEEEcCcC
Q psy7826 193 --DEAPYDIIHVGGSI 206 (213)
Q Consensus 193 --~~~~fD~Ii~~~~~ 206 (213)
..+++|.|+.+++.
T Consensus 77 ~~~~~~id~vi~~ag~ 92 (253)
T PRK08217 77 AEDFGQLNGLINNAGI 92 (253)
T ss_pred HHHcCCCCEEEECCCc
Confidence 01368999998764
No 324
>PRK07774 short chain dehydrogenase; Provisional
Probab=85.50 E-value=7.3 Score=30.78 Aligned_cols=79 Identities=14% Similarity=0.095 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC--------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-------- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~-------- 192 (213)
.++++|=.| |+|+.+..+++.+- ...+|+.++.++...+...+.+...+ .++.++.+|+.+...
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~~ 77 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG------GTAIAVQVDVSDPDSAKAMADAT 77 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEcCCCCHHHHHHHHHHH
Confidence 356788777 56677777776542 22589999988776666555544322 356788889874211
Q ss_pred --CCCCcCEEEEcCcCc
Q psy7826 193 --DEAPYDIIHVGGSIE 207 (213)
Q Consensus 193 --~~~~fD~Ii~~~~~~ 207 (213)
..+..|+||.+++..
T Consensus 78 ~~~~~~id~vi~~ag~~ 94 (250)
T PRK07774 78 VSAFGGIDYLVNNAAIY 94 (250)
T ss_pred HHHhCCCCEEEECCCCc
Confidence 013589999988753
No 325
>PRK06125 short chain dehydrogenase; Provisional
Probab=85.36 E-value=7.4 Score=31.10 Aligned_cols=80 Identities=13% Similarity=0.047 Sum_probs=51.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC------CCC
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY------LDE 194 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~------~~~ 194 (213)
.++++|=.|++ |+++..+++.+- ...+|+.++.+++..+.+.+.+.... ..++.++.+|+.+.. ...
T Consensus 6 ~~k~vlItG~~-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 79 (259)
T PRK06125 6 AGKRVLITGAS-KGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-----GVDVAVHALDLSSPEAREQLAAEA 79 (259)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-----CCceEEEEecCCCHHHHHHHHHHh
Confidence 35688888864 445555554432 22589999999888777666665432 236788888886311 112
Q ss_pred CCcCEEEEcCcCc
Q psy7826 195 APYDIIHVGGSIE 207 (213)
Q Consensus 195 ~~fD~Ii~~~~~~ 207 (213)
++.|.++.+++..
T Consensus 80 g~id~lv~~ag~~ 92 (259)
T PRK06125 80 GDIDILVNNAGAI 92 (259)
T ss_pred CCCCEEEECCCCC
Confidence 4689999987653
No 326
>PRK08862 short chain dehydrogenase; Provisional
Probab=85.26 E-value=8.3 Score=30.50 Aligned_cols=78 Identities=5% Similarity=-0.075 Sum_probs=49.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHHc-CCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC---------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCV-GKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY--------- 191 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~--------- 191 (213)
.++++|=.|++.|. +..+++.+ ....+|+.++.++..++...+.+...+ ..+.....|..+..
T Consensus 4 ~~k~~lVtGas~GI-G~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~------~~~~~~~~D~~~~~~~~~~~~~~ 76 (227)
T PRK08862 4 KSSIILITSAGSVL-GRTISCHFARLGATLILCDQDQSALKDTYEQCSALT------DNVYSFQLKDFSQESIRHLFDAI 76 (227)
T ss_pred CCeEEEEECCccHH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC------CCeEEEEccCCCHHHHHHHHHHH
Confidence 35688888888765 33333332 223589999999988877776665544 24666777766210
Q ss_pred -CCCC-CcCEEEEcCcC
Q psy7826 192 -LDEA-PYDIIHVGGSI 206 (213)
Q Consensus 192 -~~~~-~fD~Ii~~~~~ 206 (213)
..-+ .+|+++.+++.
T Consensus 77 ~~~~g~~iD~li~nag~ 93 (227)
T PRK08862 77 EQQFNRAPDVLVNNWTS 93 (227)
T ss_pred HHHhCCCCCEEEECCcc
Confidence 0113 68999999853
No 327
>PRK08703 short chain dehydrogenase; Provisional
Probab=85.12 E-value=12 Score=29.48 Aligned_cols=79 Identities=11% Similarity=0.027 Sum_probs=49.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC--------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-------- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~-------- 192 (213)
+++++|=.|+ +|.++..+++.+- ...+|+.++.++...+...+.+...+ ...+.+...|..+...
T Consensus 5 ~~k~vlItG~-sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 78 (239)
T PRK08703 5 SDKTILVTGA-SQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAG-----HPEPFAIRFDLMSAEEKEFEQFAA 78 (239)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcC-----CCCcceEEeeecccchHHHHHHHH
Confidence 3568898985 5556666655542 23589999999887776666654433 2345566666542100
Q ss_pred -----CCCCcCEEEEcCcC
Q psy7826 193 -----DEAPYDIIHVGGSI 206 (213)
Q Consensus 193 -----~~~~fD~Ii~~~~~ 206 (213)
..+.+|.|+.+++.
T Consensus 79 ~i~~~~~~~id~vi~~ag~ 97 (239)
T PRK08703 79 TIAEATQGKLDGIVHCAGY 97 (239)
T ss_pred HHHHHhCCCCCEEEEeccc
Confidence 00357999988875
No 328
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=85.11 E-value=2.6 Score=36.58 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=49.2
Q ss_pred CEEEEEcCCccHHHHHHHHHcC--CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC---CCCCcC
Q psy7826 124 KKVLDIGSGNGYFTALLAWCVG--KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL---DEAPYD 198 (213)
Q Consensus 124 ~~vLDiG~G~G~~t~~la~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~---~~~~fD 198 (213)
++||=+|| |..+..+|..+- .+.+|+..|.+.+..+++.... ..++++++.|+.+... -...+|
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~---------~~~v~~~~vD~~d~~al~~li~~~d 70 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI---------GGKVEALQVDAADVDALVALIKDFD 70 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc---------cccceeEEecccChHHHHHHHhcCC
Confidence 46899999 555555554432 2369999999998888877664 2378889989874311 123569
Q ss_pred EEEEcCcCc
Q psy7826 199 IIHVGGSIE 207 (213)
Q Consensus 199 ~Ii~~~~~~ 207 (213)
+|++.....
T Consensus 71 ~VIn~~p~~ 79 (389)
T COG1748 71 LVINAAPPF 79 (389)
T ss_pred EEEEeCCch
Confidence 988876543
No 329
>KOG0821|consensus
Probab=84.99 E-value=3.3 Score=33.19 Aligned_cols=59 Identities=17% Similarity=0.249 Sum_probs=44.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCC
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR 188 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~ 188 (213)
...-|.++|.|+|+.|..+... +- .++..+|++...+.-.+...+.. ..+..++.+|+.
T Consensus 50 ~~~~v~eIgPgpggitR~il~a-~~-~RL~vVE~D~RFip~LQ~L~EAa------~~~~~IHh~D~L 108 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNA-DV-ARLLVVEKDTRFIPGLQMLSEAA------PGKLRIHHGDVL 108 (326)
T ss_pred ccceeEEecCCCCchhHHHHhc-ch-hheeeeeeccccChHHHHHhhcC------CcceEEeccccc
Confidence 4567999999999999999876 32 47888999988887766655433 236677777765
No 330
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=84.58 E-value=3.8 Score=35.53 Aligned_cols=51 Identities=16% Similarity=0.223 Sum_probs=36.4
Q ss_pred HHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHh
Q psy7826 113 LDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVI 168 (213)
Q Consensus 113 ~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~ 168 (213)
.+.| .+.++++||-|.+|-.....+++ . +| .+|++||+|+..+...+-.+.
T Consensus 28 ~~aL--~i~~~d~vl~ItSaG~N~L~yL~-~-~P-~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 28 MEAL--NIGPDDRVLTITSAGCNALDYLL-A-GP-KRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred HHHh--CCCCCCeEEEEccCCchHHHHHh-c-CC-ceEEEEeCCHHHHHHHHHHHH
Confidence 4455 58899999999766444444443 3 45 599999999999877775543
No 331
>PRK06720 hypothetical protein; Provisional
Probab=84.57 E-value=14 Score=27.95 Aligned_cols=81 Identities=21% Similarity=0.157 Sum_probs=49.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHc-CCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC---------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCV-GKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY--------- 191 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~--------- 191 (213)
+++.+|-.|++.|. +..++..+ ....+|+.+|.+...++.+.+.+...+ ..+.++..|.....
T Consensus 15 ~gk~~lVTGa~~GI-G~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dl~~~~~v~~~v~~~ 87 (169)
T PRK06720 15 AGKVAIVTGGGIGI-GRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLG------GEALFVSYDMEKQGDWQRVISIT 87 (169)
T ss_pred CCCEEEEecCCChH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHHHHHHH
Confidence 46678888876543 33333322 123588889988877766655554433 34667788876210
Q ss_pred -CCCCCcCEEEEcCcCccC
Q psy7826 192 -LDEAPYDIIHVGGSIEDI 209 (213)
Q Consensus 192 -~~~~~fD~Ii~~~~~~~~ 209 (213)
..-+..|.++.+++....
T Consensus 88 ~~~~G~iDilVnnAG~~~~ 106 (169)
T PRK06720 88 LNAFSRIDMLFQNAGLYKI 106 (169)
T ss_pred HHHcCCCCEEEECCCcCCC
Confidence 012468999999876543
No 332
>PRK07890 short chain dehydrogenase; Provisional
Probab=84.33 E-value=11 Score=29.86 Aligned_cols=78 Identities=14% Similarity=-0.006 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC--------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-------- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~-------- 192 (213)
.++++|=.|+ +|+++..+++.+- ...+|+.++.++...+...+.+...+ .++.++..|+.+...
T Consensus 4 ~~k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~ 76 (258)
T PRK07890 4 KGKVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG------RRALAVPTDITDEDQCANLVALA 76 (258)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC------CceEEEecCCCCHHHHHHHHHHH
Confidence 4567887776 4555555555442 22589999999887777666665433 367889999863210
Q ss_pred --CCCCcCEEEEcCcC
Q psy7826 193 --DEAPYDIIHVGGSI 206 (213)
Q Consensus 193 --~~~~fD~Ii~~~~~ 206 (213)
..+..|.|+.+++.
T Consensus 77 ~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 77 LERFGRVDALVNNAFR 92 (258)
T ss_pred HHHcCCccEEEECCcc
Confidence 11368999998865
No 333
>PRK05854 short chain dehydrogenase; Provisional
Probab=84.11 E-value=11 Score=31.31 Aligned_cols=82 Identities=15% Similarity=0.116 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC---------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY--------- 191 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~--------- 191 (213)
.+++++=.|++. +++..+++.+- ...+|+.+..+.+..+.+.+.+....- ..++.++.+|+.+..
T Consensus 13 ~gk~~lITGas~-GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~----~~~v~~~~~Dl~d~~sv~~~~~~~ 87 (313)
T PRK05854 13 SGKRAVVTGASD-GLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVP----DAKLSLRALDLSSLASVAALGEQL 87 (313)
T ss_pred CCCEEEEeCCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC----CCceEEEEecCCCHHHHHHHHHHH
Confidence 356788888764 44455554432 235899999988877776666543220 236888999987311
Q ss_pred -CCCCCcCEEEEcCcCcc
Q psy7826 192 -LDEAPYDIIHVGGSIED 208 (213)
Q Consensus 192 -~~~~~fD~Ii~~~~~~~ 208 (213)
...++.|+++.+++...
T Consensus 88 ~~~~~~iD~li~nAG~~~ 105 (313)
T PRK05854 88 RAEGRPIHLLINNAGVMT 105 (313)
T ss_pred HHhCCCccEEEECCcccc
Confidence 11246899999987644
No 334
>PRK07063 short chain dehydrogenase; Provisional
Probab=83.99 E-value=11 Score=30.07 Aligned_cols=81 Identities=20% Similarity=0.188 Sum_probs=52.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC--------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-------- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~-------- 192 (213)
.++++|-.|++ |+.+..+++.+- ...+|+.++.+++.++...+.+...+. ..++.++.+|+.+...
T Consensus 6 ~~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (260)
T PRK07063 6 AGKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVA----GARVLAVPADVTDAASVAAAVAAA 80 (260)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccC----CceEEEEEccCCCHHHHHHHHHHH
Confidence 35688888875 455555555442 225899999998888777766654211 2468889999873210
Q ss_pred --CCCCcCEEEEcCcCc
Q psy7826 193 --DEAPYDIIHVGGSIE 207 (213)
Q Consensus 193 --~~~~fD~Ii~~~~~~ 207 (213)
..+.+|.++.+++..
T Consensus 81 ~~~~g~id~li~~ag~~ 97 (260)
T PRK07063 81 EEAFGPLDVLVNNAGIN 97 (260)
T ss_pred HHHhCCCcEEEECCCcC
Confidence 113689999988754
No 335
>PRK06139 short chain dehydrogenase; Provisional
Probab=83.79 E-value=8.8 Score=32.40 Aligned_cols=80 Identities=10% Similarity=0.018 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC-----C---
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-----L--- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~-----~--- 192 (213)
.++++|=.|++ |+.+..+++.+- ...+|+.++.+++.++...+.+...+ .++.++..|+.+.. .
T Consensus 6 ~~k~vlITGAs-~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g------~~~~~~~~Dv~d~~~v~~~~~~~ 78 (330)
T PRK06139 6 HGAVVVITGAS-SGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG------AEVLVVPTDVTDADQVKALATQA 78 (330)
T ss_pred CCCEEEEcCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEeeCCCHHHHHHHHHHH
Confidence 45678877775 444555544332 22589999999998888777776654 35778888887321 0
Q ss_pred --CCCCcCEEEEcCcCcc
Q psy7826 193 --DEAPYDIIHVGGSIED 208 (213)
Q Consensus 193 --~~~~fD~Ii~~~~~~~ 208 (213)
..+.+|+++.++....
T Consensus 79 ~~~~g~iD~lVnnAG~~~ 96 (330)
T PRK06139 79 ASFGGRIDVWVNNVGVGA 96 (330)
T ss_pred HHhcCCCCEEEECCCcCC
Confidence 1146899999987543
No 336
>PRK07478 short chain dehydrogenase; Provisional
Probab=83.67 E-value=13 Score=29.46 Aligned_cols=78 Identities=15% Similarity=0.072 Sum_probs=51.0
Q ss_pred CCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC----------
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY---------- 191 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~---------- 191 (213)
++++|=.|++ |+.+..+++.+- ...+|+.++.++..++.+.+.+...+ .++.++.+|+.+..
T Consensus 6 ~k~~lItGas-~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~ 78 (254)
T PRK07478 6 GKVAIITGAS-SGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG------GEAVALAGDVRDEAYAKALVALAV 78 (254)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEcCCCCHHHHHHHHHHHH
Confidence 5678877765 444455554432 22589999998888877766665543 36788889987321
Q ss_pred CCCCCcCEEEEcCcCc
Q psy7826 192 LDEAPYDIIHVGGSIE 207 (213)
Q Consensus 192 ~~~~~fD~Ii~~~~~~ 207 (213)
...+..|.++.+++..
T Consensus 79 ~~~~~id~li~~ag~~ 94 (254)
T PRK07478 79 ERFGGLDIAFNNAGTL 94 (254)
T ss_pred HhcCCCCEEEECCCCC
Confidence 0123689999998763
No 337
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=83.31 E-value=7.4 Score=32.34 Aligned_cols=81 Identities=15% Similarity=0.070 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC--C-CCCc
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL--D-EAPY 197 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~--~-~~~f 197 (213)
.+++||-.| |+|+.+.++++.+-. ..+|+++..++.............+. ..+++++.+|+.+... . ....
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~d~~~~~~~~~~~ 78 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGA----KERLKLFKADLLDEGSFELAIDGC 78 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCC----CCceEEEeCCCCCchHHHHHHcCC
Confidence 467888888 578888888876532 24787776665443333222221121 2468899999874321 0 1247
Q ss_pred CEEEEcCcCc
Q psy7826 198 DIIHVGGSIE 207 (213)
Q Consensus 198 D~Ii~~~~~~ 207 (213)
|.|+..++..
T Consensus 79 d~vih~A~~~ 88 (325)
T PLN02989 79 ETVFHTASPV 88 (325)
T ss_pred CEEEEeCCCC
Confidence 9999888754
No 338
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=83.23 E-value=14 Score=29.39 Aligned_cols=79 Identities=14% Similarity=0.069 Sum_probs=52.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC---------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY--------- 191 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~--------- 191 (213)
+++++|=.|+ +|..+..+++.+. ...+|+.++.+++.++...+.+++.+ .++.++.+|+.+..
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~~ 82 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG------GAAEALAFDIADEEAVAAAFARI 82 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC------CceEEEEccCCCHHHHHHHHHHH
Confidence 4678888885 5555666555442 23589999999887776666665544 35788899987321
Q ss_pred -CCCCCcCEEEEcCcCc
Q psy7826 192 -LDEAPYDIIHVGGSIE 207 (213)
Q Consensus 192 -~~~~~fD~Ii~~~~~~ 207 (213)
...+++|.++.+++..
T Consensus 83 ~~~~~~id~vi~~ag~~ 99 (256)
T PRK06124 83 DAEHGRLDILVNNVGAR 99 (256)
T ss_pred HHhcCCCCEEEECCCCC
Confidence 0123579999888753
No 339
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=83.20 E-value=14 Score=29.64 Aligned_cols=79 Identities=15% Similarity=0.040 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHHc-CCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC---------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCV-GKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY--------- 191 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~--------- 191 (213)
.++++|-.|++.|. +..+++.+ ....+|+.++.+++.++.....+...+ .++.++.+|+.+..
T Consensus 9 ~~k~~lItGa~~~i-G~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~~ 81 (265)
T PRK07097 9 KGKIALITGASYGI-GFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG------IEAHGYVCDVTDEDGVQAMVSQI 81 (265)
T ss_pred CCCEEEEeCCCchH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC------CceEEEEcCCCCHHHHHHHHHHH
Confidence 45678888877654 34444332 123588888999888877777766543 36888999987321
Q ss_pred -CCCCCcCEEEEcCcCc
Q psy7826 192 -LDEAPYDIIHVGGSIE 207 (213)
Q Consensus 192 -~~~~~fD~Ii~~~~~~ 207 (213)
...+++|.++.+++..
T Consensus 82 ~~~~~~id~li~~ag~~ 98 (265)
T PRK07097 82 EKEVGVIDILVNNAGII 98 (265)
T ss_pred HHhCCCCCEEEECCCCC
Confidence 0114689999998764
No 340
>PRK07062 short chain dehydrogenase; Provisional
Probab=83.16 E-value=16 Score=29.29 Aligned_cols=81 Identities=12% Similarity=0.014 Sum_probs=51.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC---------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY--------- 191 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~--------- 191 (213)
.++++|=.|++.| ++..+++.+- ...+|+.++.+++.++.+.+.+..... ..++.++.+|+.+..
T Consensus 7 ~~k~~lItGas~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~ 81 (265)
T PRK07062 7 EGRVAVVTGGSSG-IGLATVELLLEAGASVAICGRDEERLASAEARLREKFP----GARLLAARCDVLDEADVAAFAAAV 81 (265)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCC----CceEEEEEecCCCHHHHHHHHHHH
Confidence 4668888886554 4445554432 235899999998888776666544210 235778888887421
Q ss_pred -CCCCCcCEEEEcCcCc
Q psy7826 192 -LDEAPYDIIHVGGSIE 207 (213)
Q Consensus 192 -~~~~~fD~Ii~~~~~~ 207 (213)
...+..|.++.+++..
T Consensus 82 ~~~~g~id~li~~Ag~~ 98 (265)
T PRK07062 82 EARFGGVDMLVNNAGQG 98 (265)
T ss_pred HHhcCCCCEEEECCCCC
Confidence 0124689999998764
No 341
>PRK08589 short chain dehydrogenase; Validated
Probab=83.01 E-value=12 Score=30.22 Aligned_cols=78 Identities=15% Similarity=0.201 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC--------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-------- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~-------- 192 (213)
.++++|=.|++.| ++..+++.+- ...+|+.++.+ ..++...+.+...+ .++.++.+|+.+...
T Consensus 5 ~~k~vlItGas~g-IG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~~ 76 (272)
T PRK08589 5 ENKVAVITGASTG-IGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNG------GKAKAYHVDISDEQQVKDFASEI 76 (272)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcC------CeEEEEEeecCCHHHHHHHHHHH
Confidence 3567887887654 4455554432 23589999988 55555444544433 367888899873210
Q ss_pred --CCCCcCEEEEcCcCc
Q psy7826 193 --DEAPYDIIHVGGSIE 207 (213)
Q Consensus 193 --~~~~fD~Ii~~~~~~ 207 (213)
..+..|+++.+++..
T Consensus 77 ~~~~g~id~li~~Ag~~ 93 (272)
T PRK08589 77 KEQFGRVDVLFNNAGVD 93 (272)
T ss_pred HHHcCCcCEEEECCCCC
Confidence 123589999998764
No 342
>PRK06914 short chain dehydrogenase; Provisional
Probab=82.95 E-value=11 Score=30.44 Aligned_cols=80 Identities=16% Similarity=0.060 Sum_probs=49.6
Q ss_pred CCEEEEEcCCccHHHHHHHHHc-CCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC---------
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCV-GKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL--------- 192 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~--------- 192 (213)
+.++|-.|+ +|+.+..+++.+ ....+|++++.+++..+...+.....+. ..++.++.+|+.+...
T Consensus 3 ~k~~lItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~d~~~~~~~~~~~~ 77 (280)
T PRK06914 3 KKIAIVTGA-SSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNL----QQNIKVQQLDVTDQNSIHNFQLVLK 77 (280)
T ss_pred CCEEEEECC-CchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC----CCceeEEecCCCCHHHHHHHHHHHH
Confidence 346777775 445555555443 2235899999888777666655544331 2468899999874211
Q ss_pred CCCCcCEEEEcCcCc
Q psy7826 193 DEAPYDIIHVGGSIE 207 (213)
Q Consensus 193 ~~~~fD~Ii~~~~~~ 207 (213)
..++.|.|+.+++..
T Consensus 78 ~~~~id~vv~~ag~~ 92 (280)
T PRK06914 78 EIGRIDLLVNNAGYA 92 (280)
T ss_pred hcCCeeEEEECCccc
Confidence 113579998887643
No 343
>KOG2912|consensus
Probab=82.95 E-value=4.8 Score=34.04 Aligned_cols=75 Identities=24% Similarity=0.171 Sum_probs=49.9
Q ss_pred EEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCC-C------CCCCCCcCE
Q psy7826 127 LDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK-G------YLDEAPYDI 199 (213)
Q Consensus 127 LDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~-~------~~~~~~fD~ 199 (213)
+|||.|.-.+--.+-..+ .+...++.|++...++.|..|..++++ ...+.+++..... . ...+..||.
T Consensus 107 iDIgtgasci~~llg~rq-~n~~f~~teidd~s~~~a~snV~qn~l----ss~ikvV~~~~~ktll~d~~~~~~e~~ydF 181 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQ-NNWYFLATEIDDMSFNYAKSNVEQNNL----SSLIKVVKVEPQKTLLMDALKEESEIIYDF 181 (419)
T ss_pred eeccCchhhhHHhhhchh-ccceeeeeeccccccchhhcccccccc----ccceeeEEecchhhcchhhhccCccceeeE
Confidence 788877665544443332 346889999999999999999999987 5566666553321 0 111235888
Q ss_pred EEEcCcC
Q psy7826 200 IHVGGSI 206 (213)
Q Consensus 200 Ii~~~~~ 206 (213)
+.+|..+
T Consensus 182 cMcNPPF 188 (419)
T KOG2912|consen 182 CMCNPPF 188 (419)
T ss_pred EecCCch
Confidence 8887653
No 344
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=82.88 E-value=15 Score=32.21 Aligned_cols=87 Identities=18% Similarity=0.107 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhhhCCCCCEEEEEcCCccHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEE
Q psy7826 106 PFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVL 184 (213)
Q Consensus 106 ~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~ 184 (213)
+.....+...+........+++=+|+ |..+..+++.+.. ...++.+|.+++.++.+++. ...+.++.
T Consensus 214 ~~~l~~~~~~~~~~~~~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~----------~~~~~~i~ 281 (453)
T PRK09496 214 REHIRAVMSEFGRLEKPVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEE----------LPNTLVLH 281 (453)
T ss_pred HHHHHHHHHHhCccCCCCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH----------CCCCeEEE
Confidence 33344444444322233567888777 6677677766533 35899999999988877665 23567888
Q ss_pred cCCCCC--C--CCCCCcCEEEEcC
Q psy7826 185 GDGRKG--Y--LDEAPYDIIHVGG 204 (213)
Q Consensus 185 ~d~~~~--~--~~~~~fD~Ii~~~ 204 (213)
+|..+. + .....+|.|++..
T Consensus 282 gd~~~~~~L~~~~~~~a~~vi~~~ 305 (453)
T PRK09496 282 GDGTDQELLEEEGIDEADAFIALT 305 (453)
T ss_pred CCCCCHHHHHhcCCccCCEEEECC
Confidence 998632 1 1223578887643
No 345
>KOG1562|consensus
Probab=82.66 E-value=2.3 Score=35.44 Aligned_cols=85 Identities=21% Similarity=0.279 Sum_probs=62.7
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC--CCCCCcC
Q psy7826 121 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY--LDEAPYD 198 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~--~~~~~fD 198 (213)
...++||-+|-|-|+.....+++ ..-+.+.-+|++...++..++.+...-.+ ...++|.++.||..... ...++||
T Consensus 120 ~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~g-y~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACG-YEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcc-cCCCceEEEeccHHHHHHHhccCCce
Confidence 44568999999999998888777 34468999999999999998876543211 22468999999987322 2245899
Q ss_pred EEEEcCcCc
Q psy7826 199 IIHVGGSIE 207 (213)
Q Consensus 199 ~Ii~~~~~~ 207 (213)
+|+.+.+=.
T Consensus 198 Vii~dssdp 206 (337)
T KOG1562|consen 198 VIITDSSDP 206 (337)
T ss_pred EEEEecCCc
Confidence 999987643
No 346
>PRK08251 short chain dehydrogenase; Provisional
Probab=82.43 E-value=19 Score=28.34 Aligned_cols=81 Identities=12% Similarity=0.067 Sum_probs=52.4
Q ss_pred CCEEEEEcCCccHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC----------
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY---------- 191 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~---------- 191 (213)
++++|=.|+ +|+.+..+++.+-. ..+|+.++.++..++.....+..... ..++.++.+|+.+..
T Consensus 2 ~k~vlItGa-s~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~ 76 (248)
T PRK08251 2 RQKILITGA-SSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYP----GIKVAVAALDVNDHDQVFEVFAEFR 76 (248)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCC----CceEEEEEcCCCCHHHHHHHHHHHH
Confidence 346787784 66777777665532 24899999998887766655543210 236888999987421
Q ss_pred CCCCCcCEEEEcCcCcc
Q psy7826 192 LDEAPYDIIHVGGSIED 208 (213)
Q Consensus 192 ~~~~~fD~Ii~~~~~~~ 208 (213)
...+..|.|+.+++...
T Consensus 77 ~~~~~id~vi~~ag~~~ 93 (248)
T PRK08251 77 DELGGLDRVIVNAGIGK 93 (248)
T ss_pred HHcCCCCEEEECCCcCC
Confidence 01235899999987643
No 347
>PRK06949 short chain dehydrogenase; Provisional
Probab=82.34 E-value=16 Score=29.01 Aligned_cols=79 Identities=18% Similarity=0.165 Sum_probs=53.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC---------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY--------- 191 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~--------- 191 (213)
.++++|=.| |+|+.+..+++.+-. ..+|+.++.+++.++.....+...+ .++.++.+|+.+..
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~------~~~~~~~~D~~~~~~~~~~~~~~ 80 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG------GAAHVVSLDVTDYQSIKAAVAHA 80 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEecCCCHHHHHHHHHHH
Confidence 467888888 566666666665532 2489999999888877766655433 35788888886321
Q ss_pred -CCCCCcCEEEEcCcCc
Q psy7826 192 -LDEAPYDIIHVGGSIE 207 (213)
Q Consensus 192 -~~~~~fD~Ii~~~~~~ 207 (213)
...++.|.++.+++..
T Consensus 81 ~~~~~~~d~li~~ag~~ 97 (258)
T PRK06949 81 ETEAGTIDILVNNSGVS 97 (258)
T ss_pred HHhcCCCCEEEECCCCC
Confidence 0113589999988754
No 348
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=82.16 E-value=3.8 Score=36.91 Aligned_cols=44 Identities=25% Similarity=0.301 Sum_probs=36.7
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHH
Q psy7826 121 TEGKKVLDIGSGN-GYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN 166 (213)
Q Consensus 121 ~~~~~vLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~ 166 (213)
.++.+|+=+|||+ |..+...|+.+| ..|+++|.+++.++.+++.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aesl 207 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVESM 207 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHc
Confidence 4688999999996 566778888886 4899999999999888763
No 349
>PRK05876 short chain dehydrogenase; Provisional
Probab=82.15 E-value=15 Score=29.95 Aligned_cols=79 Identities=11% Similarity=0.030 Sum_probs=51.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC---------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY--------- 191 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~--------- 191 (213)
.++++|=.|++ |+++..+++.+.. ..+|+.++.++..++...+.+...+ .++.++.+|+.+..
T Consensus 5 ~~k~vlVTGas-~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~------~~~~~~~~Dv~d~~~v~~~~~~~ 77 (275)
T PRK05876 5 PGRGAVITGGA-SGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG------FDVHGVMCDVRHREEVTHLADEA 77 (275)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEeCCCCCHHHHHHHHHHH
Confidence 35678888875 5555565555422 2589999999887776666655443 35788889987321
Q ss_pred -CCCCCcCEEEEcCcCc
Q psy7826 192 -LDEAPYDIIHVGGSIE 207 (213)
Q Consensus 192 -~~~~~fD~Ii~~~~~~ 207 (213)
...++.|+++.+++..
T Consensus 78 ~~~~g~id~li~nAg~~ 94 (275)
T PRK05876 78 FRLLGHVDVVFSNAGIV 94 (275)
T ss_pred HHHcCCCCEEEECCCcC
Confidence 0123579999998764
No 350
>PRK07677 short chain dehydrogenase; Provisional
Probab=82.11 E-value=11 Score=30.05 Aligned_cols=77 Identities=16% Similarity=0.079 Sum_probs=48.5
Q ss_pred CCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC----------
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY---------- 191 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~---------- 191 (213)
++++|-.|++.| .+..+++.+- ...+|+.++.++..++...+.+...+ .++.++.+|+.+..
T Consensus 1 ~k~~lItG~s~g-iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~ 73 (252)
T PRK07677 1 EKVVIITGGSSG-MGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP------GQVLTVQMDVRNPEDVQKMVEQID 73 (252)
T ss_pred CCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEecCCCHHHHHHHHHHHH
Confidence 356787777554 4444444432 22589999998887776666655432 36888889986311
Q ss_pred CCCCCcCEEEEcCcC
Q psy7826 192 LDEAPYDIIHVGGSI 206 (213)
Q Consensus 192 ~~~~~fD~Ii~~~~~ 206 (213)
...++.|.++.+.+.
T Consensus 74 ~~~~~id~lI~~ag~ 88 (252)
T PRK07677 74 EKFGRIDALINNAAG 88 (252)
T ss_pred HHhCCccEEEECCCC
Confidence 011367999988764
No 351
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=81.77 E-value=4.7 Score=26.51 Aligned_cols=35 Identities=34% Similarity=0.538 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCccH-HHHHHHHHcCCCCEEEEEeCC
Q psy7826 122 EGKKVLDIGSGNGY-FTALLAWCVGKTGKVIGIEHI 156 (213)
Q Consensus 122 ~~~~vLDiG~G~G~-~t~~la~~~~~~~~v~gvD~s 156 (213)
..++||-+||.+|+ ++..++..++.....+||-..
T Consensus 38 GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 38 GPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp S-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred CCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 34789999999998 556777777766788887544
No 352
>PRK07035 short chain dehydrogenase; Provisional
Probab=81.68 E-value=16 Score=28.86 Aligned_cols=77 Identities=16% Similarity=0.153 Sum_probs=48.8
Q ss_pred CCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC---------
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL--------- 192 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~--------- 192 (213)
++++|=.|++.| ++..+++.+. ...+|+.++.+...++...+.+...+ .++.++..|+.+...
T Consensus 8 ~k~vlItGas~g-IG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~ 80 (252)
T PRK07035 8 GKIALVTGASRG-IGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG------GKAEALACHIGEMEQIDALFAHIR 80 (252)
T ss_pred CCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEEcCCCCHHHHHHHHHHHH
Confidence 467888887654 4444444332 22489999998887777666665443 356778888863210
Q ss_pred -CCCCcCEEEEcCcC
Q psy7826 193 -DEAPYDIIHVGGSI 206 (213)
Q Consensus 193 -~~~~fD~Ii~~~~~ 206 (213)
..++.|+++.+++.
T Consensus 81 ~~~~~id~li~~ag~ 95 (252)
T PRK07035 81 ERHGRLDILVNNAAA 95 (252)
T ss_pred HHcCCCCEEEECCCc
Confidence 11358999988864
No 353
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.60 E-value=7.1 Score=31.39 Aligned_cols=79 Identities=13% Similarity=-0.068 Sum_probs=48.0
Q ss_pred CCCEEEEEcCCcc-HHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC--------
Q psy7826 122 EGKKVLDIGSGNG-YFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-------- 191 (213)
Q Consensus 122 ~~~~vLDiG~G~G-~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~-------- 191 (213)
.++++|-.|+++| +++..+++.+-. ..+|+.++.+....+..++..+.. ..+.++.+|+.+..
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~v~~~~~~ 81 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL-------DAPIFLPLDVREPGQLEAVFAR 81 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh-------ccceEEecCcCCHHHHHHHHHH
Confidence 4678999998873 666666665422 247888888765433333333332 23457778876321
Q ss_pred --CCCCCcCEEEEcCcCc
Q psy7826 192 --LDEAPYDIIHVGGSIE 207 (213)
Q Consensus 192 --~~~~~fD~Ii~~~~~~ 207 (213)
...+..|+++.+++..
T Consensus 82 ~~~~~g~ld~lv~nAg~~ 99 (258)
T PRK07533 82 IAEEWGRLDFLLHSIAFA 99 (258)
T ss_pred HHHHcCCCCEEEEcCccC
Confidence 1124689999998754
No 354
>PRK06194 hypothetical protein; Provisional
Probab=81.59 E-value=16 Score=29.65 Aligned_cols=79 Identities=13% Similarity=0.069 Sum_probs=50.9
Q ss_pred CCEEEEEcCCccHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC-----C----
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-----L---- 192 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~-----~---- 192 (213)
+.++|=.|+ +|+.+..+++.+-. ..+|+.+|.+...++...+.+...+ .++.++.+|+.+.. .
T Consensus 6 ~k~vlVtGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~d~~~~~~~~~~~~ 78 (287)
T PRK06194 6 GKVAVITGA-ASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQG------AEVLGVRTDVSDAAQVEALADAAL 78 (287)
T ss_pred CCEEEEeCC-ccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC------CeEEEEECCCCCHHHHHHHHHHHH
Confidence 457887775 46666666654422 3589999998877766655554433 36788899987321 0
Q ss_pred -CCCCcCEEEEcCcCcc
Q psy7826 193 -DEAPYDIIHVGGSIED 208 (213)
Q Consensus 193 -~~~~fD~Ii~~~~~~~ 208 (213)
..++.|+|+.+++...
T Consensus 79 ~~~g~id~vi~~Ag~~~ 95 (287)
T PRK06194 79 ERFGAVHLLFNNAGVGA 95 (287)
T ss_pred HHcCCCCEEEECCCCCC
Confidence 0135799999988654
No 355
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=81.37 E-value=15 Score=29.45 Aligned_cols=76 Identities=16% Similarity=0.065 Sum_probs=48.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC---------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY--------- 191 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~--------- 191 (213)
+++++|=.|++. +.+..+++.+- ...+|+.++.++..++...+.. + .++.++.+|+.+..
T Consensus 5 ~~k~vlVtGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~------~~~~~~~~D~~~~~~~~~~~~~~ 74 (263)
T PRK06200 5 HGQVALITGGGS-GIGRALVERFLAEGARVAVLERSAEKLASLRQRF---G------DHVLVVEGDVTSYADNQRAVDQT 74 (263)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C------CcceEEEccCCCHHHHHHHHHHH
Confidence 456888888654 44555554432 2258999999887766554432 2 35778888886321
Q ss_pred -CCCCCcCEEEEcCcCc
Q psy7826 192 -LDEAPYDIIHVGGSIE 207 (213)
Q Consensus 192 -~~~~~fD~Ii~~~~~~ 207 (213)
...+..|+++.++++.
T Consensus 75 ~~~~g~id~li~~ag~~ 91 (263)
T PRK06200 75 VDAFGKLDCFVGNAGIW 91 (263)
T ss_pred HHhcCCCCEEEECCCCc
Confidence 0123689999998764
No 356
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=81.13 E-value=16 Score=29.50 Aligned_cols=79 Identities=19% Similarity=0.192 Sum_probs=50.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC--------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-------- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~-------- 192 (213)
.++++|=.|++. +.+..+++.+- ...+|+.++.+++..+...+.+...+ .++.++.+|+.+...
T Consensus 9 ~~k~vlVtGas~-giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~v~~~~~~~ 81 (278)
T PRK08277 9 KGKVAVITGGGG-VLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAG------GEALAVKADVLDKESLEQARQQI 81 (278)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEECCCCCHHHHHHHHHHH
Confidence 356788777754 44455554432 22589999998877766666655433 367888999873210
Q ss_pred --CCCCcCEEEEcCcCc
Q psy7826 193 --DEAPYDIIHVGGSIE 207 (213)
Q Consensus 193 --~~~~fD~Ii~~~~~~ 207 (213)
..+++|.++.+++..
T Consensus 82 ~~~~g~id~li~~ag~~ 98 (278)
T PRK08277 82 LEDFGPCDILINGAGGN 98 (278)
T ss_pred HHHcCCCCEEEECCCCC
Confidence 013689999988753
No 357
>KOG0022|consensus
Probab=81.12 E-value=4.9 Score=33.94 Aligned_cols=47 Identities=21% Similarity=0.316 Sum_probs=36.6
Q ss_pred hCCCCCEEEEEcCCccHHH-HHHHHHcCCCCEEEEEeCChHHHHHHHHH
Q psy7826 119 ELTEGKKVLDIGSGNGYFT-ALLAWCVGKTGKVIGIEHIPQLVQRATHN 166 (213)
Q Consensus 119 ~~~~~~~vLDiG~G~G~~t-~~la~~~~~~~~v~gvD~s~~~l~~a~~~ 166 (213)
.+.+|.++.-+|+|.=+++ ..-++.. ...+++|+|++++..+.|++-
T Consensus 189 kv~~GstvAVfGLG~VGLav~~Gaka~-GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 189 KVEPGSTVAVFGLGGVGLAVAMGAKAA-GASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred ccCCCCEEEEEecchHHHHHHHhHHhc-CcccEEEEecCHHHHHHHHhc
Confidence 5789999999999865555 4445554 446999999999999998764
No 358
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=80.84 E-value=12 Score=29.91 Aligned_cols=75 Identities=15% Similarity=-0.032 Sum_probs=48.9
Q ss_pred EEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC----------CC
Q psy7826 125 KVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY----------LD 193 (213)
Q Consensus 125 ~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~----------~~ 193 (213)
++|=.|++ |+++..+++.+- ...+|+.++.++..++.+.+.+... .++.++.+|+.+.. ..
T Consensus 2 ~vlItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-------~~~~~~~~Dv~d~~~~~~~~~~~~~~ 73 (259)
T PRK08340 2 NVLVTASS-RGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY-------GEVYAVKADLSDKDDLKNLVKEAWEL 73 (259)
T ss_pred eEEEEcCC-cHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-------CCceEEEcCCCCHHHHHHHHHHHHHh
Confidence 57777865 445555555442 2258999999988887776666542 25778889986311 11
Q ss_pred CCCcCEEEEcCcCc
Q psy7826 194 EAPYDIIHVGGSIE 207 (213)
Q Consensus 194 ~~~fD~Ii~~~~~~ 207 (213)
.+..|+++.+++..
T Consensus 74 ~g~id~li~naG~~ 87 (259)
T PRK08340 74 LGGIDALVWNAGNV 87 (259)
T ss_pred cCCCCEEEECCCCC
Confidence 24689999988753
No 359
>PRK07109 short chain dehydrogenase; Provisional
Probab=80.53 E-value=17 Score=30.65 Aligned_cols=79 Identities=13% Similarity=0.098 Sum_probs=52.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC--------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-------- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~-------- 192 (213)
.+++||=.|++ |+++..+++.+- ...+|+.++.+++.++...+.+...+ .++.++.+|+.+...
T Consensus 7 ~~k~vlITGas-~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g------~~~~~v~~Dv~d~~~v~~~~~~~ 79 (334)
T PRK07109 7 GRQVVVITGAS-AGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG------GEALAVVADVADAEAVQAAADRA 79 (334)
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC------CcEEEEEecCCCHHHHHHHHHHH
Confidence 35578888864 455555554432 22589999999888887777766554 367888999873210
Q ss_pred --CCCCcCEEEEcCcCc
Q psy7826 193 --DEAPYDIIHVGGSIE 207 (213)
Q Consensus 193 --~~~~fD~Ii~~~~~~ 207 (213)
..+++|+++.++...
T Consensus 80 ~~~~g~iD~lInnAg~~ 96 (334)
T PRK07109 80 EEELGPIDTWVNNAMVT 96 (334)
T ss_pred HHHCCCCCEEEECCCcC
Confidence 124689999988753
No 360
>PRK07814 short chain dehydrogenase; Provisional
Probab=80.37 E-value=19 Score=28.89 Aligned_cols=78 Identities=12% Similarity=0.066 Sum_probs=52.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC--------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-------- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~-------- 192 (213)
+++++|=.|+ +|+.+..+++.+- ...+|+.++.+++.++...+.+...+ .++.++.+|......
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~------~~~~~~~~D~~~~~~~~~~~~~~ 81 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG------RRAHVVAADLAHPEATAGLAGQA 81 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHHHHHHH
Confidence 4678888885 6666666666542 23589999999887776666655433 367888899873211
Q ss_pred --CCCCcCEEEEcCcC
Q psy7826 193 --DEAPYDIIHVGGSI 206 (213)
Q Consensus 193 --~~~~fD~Ii~~~~~ 206 (213)
..+++|.|+.+++.
T Consensus 82 ~~~~~~id~vi~~Ag~ 97 (263)
T PRK07814 82 VEAFGRLDIVVNNVGG 97 (263)
T ss_pred HHHcCCCCEEEECCCC
Confidence 01368999988764
No 361
>PRK06181 short chain dehydrogenase; Provisional
Probab=80.31 E-value=14 Score=29.44 Aligned_cols=78 Identities=14% Similarity=0.061 Sum_probs=49.6
Q ss_pred CEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC----------
Q psy7826 124 KKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL---------- 192 (213)
Q Consensus 124 ~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~---------- 192 (213)
.++|=.|+ +|+.+..+++.+- ...+|++++.++...+...+.+...+ .++.++.+|+.+...
T Consensus 2 ~~vlVtGa-sg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dl~~~~~~~~~~~~~~~ 74 (263)
T PRK06181 2 KVVIITGA-SEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG------GEALVVPTDVSDAEACERLIEAAVA 74 (263)
T ss_pred CEEEEecC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 45776664 5566666655432 23589999998877766665555433 368888899874210
Q ss_pred CCCCcCEEEEcCcCcc
Q psy7826 193 DEAPYDIIHVGGSIED 208 (213)
Q Consensus 193 ~~~~fD~Ii~~~~~~~ 208 (213)
..+..|.|+.+++...
T Consensus 75 ~~~~id~vi~~ag~~~ 90 (263)
T PRK06181 75 RFGGIDILVNNAGITM 90 (263)
T ss_pred HcCCCCEEEECCCccc
Confidence 0135799998876543
No 362
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=80.16 E-value=17 Score=28.83 Aligned_cols=79 Identities=14% Similarity=0.048 Sum_probs=51.4
Q ss_pred CCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC---------
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL--------- 192 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~--------- 192 (213)
++++|=.|+ +|+.+..+++.+- ...+|+.++.+++..+.+.+.+...+ .++.++.+|+.+...
T Consensus 7 ~~~vlItGa-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~~~ 79 (262)
T PRK13394 7 GKTAVVTGA-ASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAG------GKAIGVAMDVTNEDAVNAGIDKVA 79 (262)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcC------ceEEEEECCCCCHHHHHHHHHHHH
Confidence 567786665 4566666655442 22489999999887777776665543 357888999873210
Q ss_pred -CCCCcCEEEEcCcCcc
Q psy7826 193 -DEAPYDIIHVGGSIED 208 (213)
Q Consensus 193 -~~~~fD~Ii~~~~~~~ 208 (213)
..++.|.|+.+++..+
T Consensus 80 ~~~~~~d~vi~~ag~~~ 96 (262)
T PRK13394 80 ERFGSVDILVSNAGIQI 96 (262)
T ss_pred HHcCCCCEEEECCccCC
Confidence 1135799998887643
No 363
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=80.13 E-value=2.9 Score=28.63 Aligned_cols=51 Identities=10% Similarity=-0.029 Sum_probs=28.8
Q ss_pred EcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCEEEEcC
Q psy7826 129 IGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGG 204 (213)
Q Consensus 129 iG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~ 204 (213)
++||+|..|..+++.+ ++.++..|+ ++++...+..+.......+|+|++..
T Consensus 4 ~~Cg~G~sTS~~~~ki-------------------~~~~~~~~~------~~~v~~~~~~~~~~~~~~~Diil~~P 54 (96)
T cd05564 4 LVCSAGMSTSILVKKM-------------------KKAAEKRGI------DAEIEAVPESELEEYIDDADVVLLGP 54 (96)
T ss_pred EEcCCCchHHHHHHHH-------------------HHHHHHCCC------ceEEEEecHHHHHHhcCCCCEEEECh
Confidence 6799998887766554 444444442 35565555542211123577777653
No 364
>PRK05866 short chain dehydrogenase; Provisional
Probab=79.95 E-value=20 Score=29.56 Aligned_cols=78 Identities=15% Similarity=0.139 Sum_probs=51.4
Q ss_pred CCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC-----C----
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-----L---- 192 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~-----~---- 192 (213)
++++|=.|++ |+.+..+++.+- ...+|+.++.+.+.++...+.+...+ ..+.++.+|+.+.. .
T Consensus 40 ~k~vlItGas-ggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~------~~~~~~~~Dl~d~~~v~~~~~~~~ 112 (293)
T PRK05866 40 GKRILLTGAS-SGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAG------GDAMAVPCDLSDLDAVDALVADVE 112 (293)
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHHHHHHHH
Confidence 4678888864 555656655442 22589999999888777766665433 35778889987321 0
Q ss_pred -CCCCcCEEEEcCcCc
Q psy7826 193 -DEAPYDIIHVGGSIE 207 (213)
Q Consensus 193 -~~~~fD~Ii~~~~~~ 207 (213)
..+..|+++.+++..
T Consensus 113 ~~~g~id~li~~AG~~ 128 (293)
T PRK05866 113 KRIGGVDILINNAGRS 128 (293)
T ss_pred HHcCCCCEEEECCCCC
Confidence 123689999988654
No 365
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=79.89 E-value=5.7 Score=33.55 Aligned_cols=45 Identities=27% Similarity=0.432 Sum_probs=36.0
Q ss_pred hCCCCCEEEEEcCCc-cHHHHHHHHHcCCCCEEEEEeCChHHHHHHHH
Q psy7826 119 ELTEGKKVLDIGSGN-GYFTALLAWCVGKTGKVIGIEHIPQLVQRATH 165 (213)
Q Consensus 119 ~~~~~~~vLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 165 (213)
.+.++++||=.|||+ |..+..+|+..| .+|+++|.+++.++.+++
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH
Confidence 467789999999965 667777888864 479999999998887754
No 366
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.51 E-value=20 Score=28.22 Aligned_cols=77 Identities=16% Similarity=0.165 Sum_probs=49.3
Q ss_pred CCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC---------
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL--------- 192 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~--------- 192 (213)
++++|=.|++ |+.+..+++.+- ...+|++++.++...+.....+.. + .++.++.+|+.+...
T Consensus 5 ~~~vlItGas-g~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~------~~~~~~~~D~~~~~~~~~~~~~~~ 76 (251)
T PRK07231 5 GKVAIVTGAS-SGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-G------GRAIAVAADVSDEADVEAAVAAAL 76 (251)
T ss_pred CcEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C------CeEEEEECCCCCHHHHHHHHHHHH
Confidence 4577777764 555555554432 225899999998777666555443 2 357889999873210
Q ss_pred -CCCCcCEEEEcCcCc
Q psy7826 193 -DEAPYDIIHVGGSIE 207 (213)
Q Consensus 193 -~~~~fD~Ii~~~~~~ 207 (213)
..+.+|.|+.+++..
T Consensus 77 ~~~~~~d~vi~~ag~~ 92 (251)
T PRK07231 77 ERFGSVDILVNNAGTT 92 (251)
T ss_pred HHhCCCCEEEECCCCC
Confidence 113589999988753
No 367
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=79.43 E-value=3.1 Score=34.67 Aligned_cols=76 Identities=21% Similarity=0.334 Sum_probs=43.8
Q ss_pred CCccHHHHHHHHHcCCC--CEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEE----EEcCCCCC-----CCCCCCcCE
Q psy7826 131 SGNGYFTALLAWCVGKT--GKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKF----VLGDGRKG-----YLDEAPYDI 199 (213)
Q Consensus 131 ~G~G~~t~~la~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~----~~~d~~~~-----~~~~~~fD~ 199 (213)
-|+|+.+..|++++-.. .+++.+|.++..+-..++.+....- ..++.+ +.+|+.+. ......+|+
T Consensus 5 Ga~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~----~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdi 80 (293)
T PF02719_consen 5 GAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFP----DPKVRFEIVPVIGDVRDKERLNRIFEEYKPDI 80 (293)
T ss_dssp TTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC------TTCEEEEE--CTSCCHHHHHHHHTT--T-SE
T ss_pred ccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhccc----ccCcccccCceeecccCHHHHHHHHhhcCCCE
Confidence 36788888887765211 4899999999999988888743210 234544 58888721 122336899
Q ss_pred EEEcCcCccCC
Q psy7826 200 IHVGGSIEDIP 210 (213)
Q Consensus 200 Ii~~~~~~~~p 210 (213)
|+-.++.-|+|
T Consensus 81 VfHaAA~KhVp 91 (293)
T PF02719_consen 81 VFHAAALKHVP 91 (293)
T ss_dssp EEE------HH
T ss_pred EEEChhcCCCC
Confidence 99999988765
No 368
>PRK07831 short chain dehydrogenase; Provisional
Probab=79.41 E-value=18 Score=28.90 Aligned_cols=81 Identities=14% Similarity=0.080 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhh-CCCCCccCCCeEEEEcCCCCCC--------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVIS-GNPEFVKDGRIKFVLGDGRKGY-------- 191 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~-~gl~~~~~~~v~~~~~d~~~~~-------- 191 (213)
.++++|=.|++..+++..+++.+- ...+|+.+|.++..++...+.++. .+ ..++.++.+|+.+..
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~ 90 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELG-----LGRVEAVVCDVTSEAQVDALIDA 90 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcC-----CceEEEEEccCCCHHHHHHHHHH
Confidence 467888888642133334333321 225789899888887777666544 23 246888899987321
Q ss_pred --CCCCCcCEEEEcCcCc
Q psy7826 192 --LDEAPYDIIHVGGSIE 207 (213)
Q Consensus 192 --~~~~~fD~Ii~~~~~~ 207 (213)
...++.|+++.+++..
T Consensus 91 ~~~~~g~id~li~~ag~~ 108 (262)
T PRK07831 91 AVERLGRLDVLVNNAGLG 108 (262)
T ss_pred HHHHcCCCCEEEECCCCC
Confidence 0114689999998753
No 369
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=79.33 E-value=5.5 Score=37.07 Aligned_cols=89 Identities=18% Similarity=0.197 Sum_probs=49.1
Q ss_pred CCEEEEEcCCccHHHHHHHHHc------CC-----CCEEEEEeCCh---HHHHHH-----------HHHHhhC-----CC
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCV------GK-----TGKVIGIEHIP---QLVQRA-----------THNVISG-----NP 172 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~------~~-----~~~v~gvD~s~---~~l~~a-----------~~~~~~~-----gl 172 (213)
.-+|+|+|=|+|.-.....+.. ++ .-+++++|..+ +-+..+ ++..+.+ |+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 3589999999999776665443 12 23789999754 222222 2222221 11
Q ss_pred C--CccCC--CeEEEEcCCCCCCCC-CCCcCEEEEcC-cCccCCC
Q psy7826 173 E--FVKDG--RIKFVLGDGRKGYLD-EAPYDIIHVGG-SIEDIPE 211 (213)
Q Consensus 173 ~--~~~~~--~v~~~~~d~~~~~~~-~~~fD~Ii~~~-~~~~~p~ 211 (213)
. .+... +.++..+|+.+..+. ...||+++.|+ ++..-|+
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~ 182 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPD 182 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChh
Confidence 0 00011 345777888643332 14699999996 4445444
No 370
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=79.19 E-value=18 Score=28.52 Aligned_cols=78 Identities=12% Similarity=0.116 Sum_probs=50.8
Q ss_pred CCEEEEEcCCccHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC---------
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL--------- 192 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~--------- 192 (213)
+.++|=.|+ +|..+..+++.+-. ..+|+.++.+..........+...+ .++.++.+|+.+...
T Consensus 3 ~~~ilItGa-s~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~~~ 75 (250)
T TIGR03206 3 DKTAIVTGG-GGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG------GNAQAFACDITDRDSVDTAVAAAE 75 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC------CcEEEEEcCCCCHHHHHHHHHHHH
Confidence 567888886 45666666655422 2489999998887776666655433 368889999863210
Q ss_pred -CCCCcCEEEEcCcCc
Q psy7826 193 -DEAPYDIIHVGGSIE 207 (213)
Q Consensus 193 -~~~~fD~Ii~~~~~~ 207 (213)
..++.|.++.+++..
T Consensus 76 ~~~~~~d~vi~~ag~~ 91 (250)
T TIGR03206 76 QALGPVDVLVNNAGWD 91 (250)
T ss_pred HHcCCCCEEEECCCCC
Confidence 013579999888754
No 371
>PRK06197 short chain dehydrogenase; Provisional
Probab=79.03 E-value=25 Score=28.91 Aligned_cols=82 Identities=11% Similarity=0.022 Sum_probs=51.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC-----C---
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-----L--- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~-----~--- 192 (213)
.+++||=.|+ +|+++..+++.+-. ..+|+.++.+....+.+.+.+..... ..++.++.+|+.+.. .
T Consensus 15 ~~k~vlItGa-s~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~~Dl~d~~~v~~~~~~~ 89 (306)
T PRK06197 15 SGRVAVVTGA-NTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATP----GADVTLQELDLTSLASVRAAADAL 89 (306)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC----CCceEEEECCCCCHHHHHHHHHHH
Confidence 4567887775 45666666654422 24888888888777666555543210 236788899987321 0
Q ss_pred --CCCCcCEEEEcCcCcc
Q psy7826 193 --DEAPYDIIHVGGSIED 208 (213)
Q Consensus 193 --~~~~fD~Ii~~~~~~~ 208 (213)
..+.+|+++.+++...
T Consensus 90 ~~~~~~iD~li~nAg~~~ 107 (306)
T PRK06197 90 RAAYPRIDLLINNAGVMY 107 (306)
T ss_pred HhhCCCCCEEEECCcccc
Confidence 1235899999987643
No 372
>PRK07576 short chain dehydrogenase; Provisional
Probab=78.94 E-value=22 Score=28.59 Aligned_cols=78 Identities=18% Similarity=0.138 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC-----C---
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-----L--- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~-----~--- 192 (213)
+++++|-.|+ +|+.+..+++.+- ...+|+.++.+++.++...+.+...+ .++.++.+|+.+.. .
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dv~~~~~i~~~~~~~ 80 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG------PEGLGVSADVRDYAAVEAAFAQI 80 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC------CceEEEECCCCCHHHHHHHHHHH
Confidence 4668888885 5666666655442 22589999998887766655555433 35678888986311 0
Q ss_pred --CCCCcCEEEEcCcC
Q psy7826 193 --DEAPYDIIHVGGSI 206 (213)
Q Consensus 193 --~~~~fD~Ii~~~~~ 206 (213)
..+++|+++.+++.
T Consensus 81 ~~~~~~iD~vi~~ag~ 96 (264)
T PRK07576 81 ADEFGPIDVLVSGAAG 96 (264)
T ss_pred HHHcCCCCEEEECCCC
Confidence 11357999988754
No 373
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=78.83 E-value=8.2 Score=32.56 Aligned_cols=76 Identities=22% Similarity=0.210 Sum_probs=46.1
Q ss_pred CCEEEEEcCCccHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC-----CCCCC
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-----LDEAP 196 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~-----~~~~~ 196 (213)
+++||-.| |+|+.+.++++.+-. ..+|++++.++.......+.... ..++.++.+|+.+.. .....
T Consensus 4 ~k~ilItG-atG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (349)
T TIGR02622 4 GKKVLVTG-HTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNL-------AKKIEDHFGDIRDAAKLRKAIAEFK 75 (349)
T ss_pred CCEEEEEC-CCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhh-------cCCceEEEccCCCHHHHHHHHhhcC
Confidence 56788877 577888887776532 24899998766543222222211 235778888986321 11224
Q ss_pred cCEEEEcCcC
Q psy7826 197 YDIIHVGGSI 206 (213)
Q Consensus 197 fD~Ii~~~~~ 206 (213)
+|.|+-.++.
T Consensus 76 ~d~vih~A~~ 85 (349)
T TIGR02622 76 PEIVFHLAAQ 85 (349)
T ss_pred CCEEEECCcc
Confidence 7999888764
No 374
>PRK05650 short chain dehydrogenase; Provisional
Probab=78.75 E-value=13 Score=29.83 Aligned_cols=76 Identities=11% Similarity=-0.006 Sum_probs=49.3
Q ss_pred EEEEEcCCccHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC----------C
Q psy7826 125 KVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL----------D 193 (213)
Q Consensus 125 ~vLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~----------~ 193 (213)
+||-.|+ +|+.+..+++.+-. ..+|+.++.+...++.+...+...+ .++.++.+|+.+... .
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~D~~~~~~~~~~~~~i~~~ 74 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAG------GDGFYQRCDVRDYSQLTALAQACEEK 74 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CceEEEEccCCCHHHHHHHHHHHHHH
Confidence 5676665 55566566554422 2489999998887777666665543 367888999863210 1
Q ss_pred CCCcCEEEEcCcCc
Q psy7826 194 EAPYDIIHVGGSIE 207 (213)
Q Consensus 194 ~~~fD~Ii~~~~~~ 207 (213)
.+++|.++.+++..
T Consensus 75 ~~~id~lI~~ag~~ 88 (270)
T PRK05650 75 WGGIDVIVNNAGVA 88 (270)
T ss_pred cCCCCEEEECCCCC
Confidence 13689999988754
No 375
>PRK09072 short chain dehydrogenase; Provisional
Probab=78.65 E-value=22 Score=28.43 Aligned_cols=79 Identities=14% Similarity=0.202 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC--------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-------- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~-------- 192 (213)
++.++|=.|++ |+++..+++.+- ...+|+.++.+++.++.....+ .. ..++.++.+|+.+...
T Consensus 4 ~~~~vlItG~s-~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~------~~~~~~~~~D~~d~~~~~~~~~~~ 75 (263)
T PRK09072 4 KDKRVLLTGAS-GGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PY------PGRHRWVVADLTSEAGREAVLARA 75 (263)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hc------CCceEEEEccCCCHHHHHHHHHHH
Confidence 35578888766 455555544332 2258999999988777666554 22 2468888899874210
Q ss_pred -CCCCcCEEEEcCcCcc
Q psy7826 193 -DEAPYDIIHVGGSIED 208 (213)
Q Consensus 193 -~~~~fD~Ii~~~~~~~ 208 (213)
..+..|.++.+++...
T Consensus 76 ~~~~~id~lv~~ag~~~ 92 (263)
T PRK09072 76 REMGGINVLINNAGVNH 92 (263)
T ss_pred HhcCCCCEEEECCCCCC
Confidence 1145799999887643
No 376
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=78.44 E-value=3.7 Score=28.09 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=13.8
Q ss_pred EEEEEcCCccHHHHHHHHHc
Q psy7826 125 KVLDIGSGNGYFTALLAWCV 144 (213)
Q Consensus 125 ~vLDiG~G~G~~t~~la~~~ 144 (213)
+|| ++||+|..|..++..+
T Consensus 5 ~IL-l~C~~G~sSS~l~~k~ 23 (95)
T TIGR00853 5 NIL-LLCAAGMSTSLLVNKM 23 (95)
T ss_pred EEE-EECCCchhHHHHHHHH
Confidence 555 7899998887766554
No 377
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=78.32 E-value=20 Score=28.54 Aligned_cols=78 Identities=13% Similarity=0.047 Sum_probs=50.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC--------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-------- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~-------- 192 (213)
.+++||=.|++ |+.+..+++.+- ...+++.++.+...++.....+...+ .++.++.+|+.+...
T Consensus 10 ~~k~vlVtG~s-~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~------~~~~~~~~D~~~~~~i~~~~~~~ 82 (255)
T PRK06113 10 DGKCAIITGAG-AGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG------GQAFACRCDITSEQELSALADFA 82 (255)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHHHHHHH
Confidence 36789999965 444455544432 22578888888887776666655443 357788899873210
Q ss_pred --CCCCcCEEEEcCcC
Q psy7826 193 --DEAPYDIIHVGGSI 206 (213)
Q Consensus 193 --~~~~fD~Ii~~~~~ 206 (213)
..+.+|.++.+++.
T Consensus 83 ~~~~~~~d~li~~ag~ 98 (255)
T PRK06113 83 LSKLGKVDILVNNAGG 98 (255)
T ss_pred HHHcCCCCEEEECCCC
Confidence 11368999998875
No 378
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=78.11 E-value=13 Score=33.65 Aligned_cols=42 Identities=26% Similarity=0.323 Sum_probs=33.2
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHcCCCCEEEEEeCChHHHHHHHH
Q psy7826 122 EGKKVLDIGSGN-GYFTALLAWCVGKTGKVIGIEHIPQLVQRATH 165 (213)
Q Consensus 122 ~~~~vLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 165 (213)
++.+|+=+|+|. |..+..+++.+| ..|+.+|.++..++.++.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 567999999996 456677777775 579999999998777665
No 379
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=78.10 E-value=24 Score=27.99 Aligned_cols=79 Identities=18% Similarity=0.135 Sum_probs=53.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC-----C---
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-----L--- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~-----~--- 192 (213)
.++++|=.|+ +|+.+..+++.+- ...+|+.++.++..++...+.+...+ .++.++.+|+.+.. .
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~------~~~~~~~~D~~~~~~~~~~~~~~ 81 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG------LSAHALAFDVTDHDAVRAAIDAF 81 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC------ceEEEEEccCCCHHHHHHHHHHH
Confidence 4678998885 6666777666542 22589999999887776666665433 25788888987321 0
Q ss_pred --CCCCcCEEEEcCcCc
Q psy7826 193 --DEAPYDIIHVGGSIE 207 (213)
Q Consensus 193 --~~~~fD~Ii~~~~~~ 207 (213)
..++.|.++.+++..
T Consensus 82 ~~~~~~~d~li~~ag~~ 98 (255)
T PRK07523 82 EAEIGPIDILVNNAGMQ 98 (255)
T ss_pred HHhcCCCCEEEECCCCC
Confidence 123589999988764
No 380
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=77.95 E-value=6.7 Score=33.06 Aligned_cols=46 Identities=22% Similarity=0.240 Sum_probs=32.7
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHcCCCCEEEEEeCChHHHHHHHH
Q psy7826 120 LTEGKKVLDIGSGN-GYFTALLAWCVGKTGKVIGIEHIPQLVQRATH 165 (213)
Q Consensus 120 ~~~~~~vLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 165 (213)
.+++++||=+|||+ |..+..+++......+|+++|.++..++.+++
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 46789999999864 33445556642123589999999998888764
No 381
>PRK08643 acetoin reductase; Validated
Probab=77.70 E-value=24 Score=27.95 Aligned_cols=77 Identities=14% Similarity=0.045 Sum_probs=50.1
Q ss_pred CCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC---------
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL--------- 192 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~--------- 192 (213)
++++|=.|+ +|+.+..+++.+- ...+|+.++.++...+.....+...+ .++.++.+|+.+...
T Consensus 2 ~k~~lItGa-s~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~~~ 74 (256)
T PRK08643 2 SKVALVTGA-GQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG------GKAIAVKADVSDRDQVFAAVRQVV 74 (256)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEECCCCCHHHHHHHHHHHH
Confidence 346776675 4556666665542 22589999998888777766665443 367888999874210
Q ss_pred -CCCCcCEEEEcCcC
Q psy7826 193 -DEAPYDIIHVGGSI 206 (213)
Q Consensus 193 -~~~~fD~Ii~~~~~ 206 (213)
..++.|.++.+++.
T Consensus 75 ~~~~~id~vi~~ag~ 89 (256)
T PRK08643 75 DTFGDLNVVVNNAGV 89 (256)
T ss_pred HHcCCCCEEEECCCC
Confidence 11358999998865
No 382
>PRK07024 short chain dehydrogenase; Provisional
Probab=77.62 E-value=19 Score=28.65 Aligned_cols=77 Identities=14% Similarity=0.089 Sum_probs=48.9
Q ss_pred CEEEEEcCCccHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC----------C
Q psy7826 124 KKVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY----------L 192 (213)
Q Consensus 124 ~~vLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~----------~ 192 (213)
++||=.|+ +|+++..+++.+.. ..+|+.++.+++.++...+.+.. ..++.++.+|+.+.. .
T Consensus 3 ~~vlItGa-s~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~i~~~~~~~~~ 74 (257)
T PRK07024 3 LKVFITGA-SSGIGQALAREYARQGATLGLVARRTDALQAFAARLPK-------AARVSVYAADVRDADALAAAAADFIA 74 (257)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccc-------CCeeEEEEcCCCCHHHHHHHHHHHHH
Confidence 46777776 55666666655422 24899999988777655544322 126888999987321 1
Q ss_pred CCCCcCEEEEcCcCcc
Q psy7826 193 DEAPYDIIHVGGSIED 208 (213)
Q Consensus 193 ~~~~fD~Ii~~~~~~~ 208 (213)
..+..|+++.+++...
T Consensus 75 ~~g~id~lv~~ag~~~ 90 (257)
T PRK07024 75 AHGLPDVVIANAGISV 90 (257)
T ss_pred hCCCCCEEEECCCcCC
Confidence 1235799999987643
No 383
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=77.54 E-value=28 Score=27.49 Aligned_cols=79 Identities=19% Similarity=0.126 Sum_probs=53.1
Q ss_pred CCEEEEEcCCccHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC---------
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL--------- 192 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~--------- 192 (213)
+++||=.|+ +|+.+..+++.+.. ..+|+.++.++...+.....+...+ .++.++.+|+.+...
T Consensus 4 ~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~~~ 76 (258)
T PRK12429 4 GKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG------GKAIGVAMDVTDEEAINAGIDYAV 76 (258)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEcCCCCHHHHHHHHHHHH
Confidence 456776665 67777787776532 2489999999888777666655433 468888999873210
Q ss_pred -CCCCcCEEEEcCcCcc
Q psy7826 193 -DEAPYDIIHVGGSIED 208 (213)
Q Consensus 193 -~~~~fD~Ii~~~~~~~ 208 (213)
..+.+|+|+.+++..+
T Consensus 77 ~~~~~~d~vi~~a~~~~ 93 (258)
T PRK12429 77 ETFGGVDILVNNAGIQH 93 (258)
T ss_pred HHcCCCCEEEECCCCCC
Confidence 1135899998887543
No 384
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=77.36 E-value=10 Score=31.80 Aligned_cols=78 Identities=15% Similarity=0.158 Sum_probs=48.4
Q ss_pred CCEEEEEcCCccHHHHHHHHHcCCC---CEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC---CCCC
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVGKT---GKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL---DEAP 196 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~~~---~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~---~~~~ 196 (213)
+++||=.|+ +|+.+.++++.+-.. .+|+.++.+........+.. . ..++.++.+|+.+... .-..
T Consensus 4 ~k~vLVTGa-tG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~---~-----~~~~~~v~~Dl~d~~~l~~~~~~ 74 (324)
T TIGR03589 4 NKSILITGG-TGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF---P-----APCLRFFIGDVRDKERLTRALRG 74 (324)
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh---C-----CCcEEEEEccCCCHHHHHHHHhc
Confidence 567887775 688888887765322 37888887654433222221 1 2368899999874211 0124
Q ss_pred cCEEEEcCcCccC
Q psy7826 197 YDIIHVGGSIEDI 209 (213)
Q Consensus 197 fD~Ii~~~~~~~~ 209 (213)
+|.|+..++..+.
T Consensus 75 iD~Vih~Ag~~~~ 87 (324)
T TIGR03589 75 VDYVVHAAALKQV 87 (324)
T ss_pred CCEEEECcccCCC
Confidence 8999998876544
No 385
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=77.11 E-value=3.5 Score=28.52 Aligned_cols=18 Identities=33% Similarity=0.346 Sum_probs=13.1
Q ss_pred EEEEcCCccHHHHHHHHHc
Q psy7826 126 VLDIGSGNGYFTALLAWCV 144 (213)
Q Consensus 126 vLDiG~G~G~~t~~la~~~ 144 (213)
|| ++||.|..|..+++.+
T Consensus 3 Il-l~C~~GaSSs~la~km 20 (99)
T cd05565 3 VL-VLCAGGGTSGLLANAL 20 (99)
T ss_pred EE-EECCCCCCHHHHHHHH
Confidence 44 6679998777777765
No 386
>PRK09291 short chain dehydrogenase; Provisional
Probab=77.04 E-value=19 Score=28.48 Aligned_cols=77 Identities=18% Similarity=0.092 Sum_probs=49.1
Q ss_pred CEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC----CCCCcC
Q psy7826 124 KKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL----DEAPYD 198 (213)
Q Consensus 124 ~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~----~~~~fD 198 (213)
+++|=.|+ +|+++..+++.+- ...+|++++.++...+..+......+ .++.++.+|+.+... .....|
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~id 75 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRG------LALRVEKLDLTDAIDRAQAAEWDVD 75 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcceEEEeeCCCHHHHHHHhcCCCC
Confidence 46787787 4555666655442 23589999888776666555554443 357888899864210 123689
Q ss_pred EEEEcCcCc
Q psy7826 199 IIHVGGSIE 207 (213)
Q Consensus 199 ~Ii~~~~~~ 207 (213)
+|+.+++..
T Consensus 76 ~vi~~ag~~ 84 (257)
T PRK09291 76 VLLNNAGIG 84 (257)
T ss_pred EEEECCCcC
Confidence 999987754
No 387
>PRK09242 tropinone reductase; Provisional
Probab=76.53 E-value=36 Score=27.02 Aligned_cols=81 Identities=11% Similarity=0.051 Sum_probs=51.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC---------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY--------- 191 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~--------- 191 (213)
.++++|=.|++. +.+..+++.+. ...+|+.++.+.+.++...+.+....- ..++.++.+|+.+..
T Consensus 8 ~~k~~lItGa~~-gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (257)
T PRK09242 8 DGQTALITGASK-GIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFP----EREVHGLAADVSDDEDRRAILDWV 82 (257)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCC----CCeEEEEECCCCCHHHHHHHHHHH
Confidence 466888888754 44445544432 225899999888877776666544310 236788899987321
Q ss_pred -CCCCCcCEEEEcCcCc
Q psy7826 192 -LDEAPYDIIHVGGSIE 207 (213)
Q Consensus 192 -~~~~~fD~Ii~~~~~~ 207 (213)
...+++|.|+.++...
T Consensus 83 ~~~~g~id~li~~ag~~ 99 (257)
T PRK09242 83 EDHWDGLHILVNNAGGN 99 (257)
T ss_pred HHHcCCCCEEEECCCCC
Confidence 0124689999888753
No 388
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=76.42 E-value=16 Score=30.17 Aligned_cols=79 Identities=15% Similarity=0.082 Sum_probs=46.9
Q ss_pred CCEEEEEcCCccHHHHHHHHHcCCC-CEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCC---CCCcC
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVGKT-GKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLD---EAPYD 198 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~---~~~fD 198 (213)
+++||=.|+ +|+.+.++++.+-.. .+|++++.+..............+. .++++++.+|+.+...- ...+|
T Consensus 4 ~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~d 78 (322)
T PLN02662 4 GKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGA----KERLHLFKANLLEEGSFDSVVDGCE 78 (322)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCC----CCceEEEeccccCcchHHHHHcCCC
Confidence 467877775 799988888776332 4788877665432222221111110 24788999998743210 12479
Q ss_pred EEEEcCcC
Q psy7826 199 IIHVGGSI 206 (213)
Q Consensus 199 ~Ii~~~~~ 206 (213)
.|+..++.
T Consensus 79 ~Vih~A~~ 86 (322)
T PLN02662 79 GVFHTASP 86 (322)
T ss_pred EEEEeCCc
Confidence 99888764
No 389
>PRK07326 short chain dehydrogenase; Provisional
Probab=76.22 E-value=30 Score=26.97 Aligned_cols=78 Identities=15% Similarity=0.098 Sum_probs=50.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC-----C---
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-----L--- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~-----~--- 192 (213)
.+.++|=.|+ +|..+..+++.+- ...+|++++.++...+...+.+.. ...+.++.+|+.+.. .
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~-------~~~~~~~~~D~~~~~~~~~~~~~~ 76 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNN-------KGNVLGLAADVRDEADVQRAVDAI 76 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhc-------cCcEEEEEccCCCHHHHHHHHHHH
Confidence 3567888885 6777777766542 225899999988777666555432 135788888876321 0
Q ss_pred --CCCCcCEEEEcCcCc
Q psy7826 193 --DEAPYDIIHVGGSIE 207 (213)
Q Consensus 193 --~~~~fD~Ii~~~~~~ 207 (213)
..+.+|.|+.+.+..
T Consensus 77 ~~~~~~~d~vi~~ag~~ 93 (237)
T PRK07326 77 VAAFGGLDVLIANAGVG 93 (237)
T ss_pred HHHcCCCCEEEECCCCC
Confidence 013689999887654
No 390
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=75.96 E-value=15 Score=31.01 Aligned_cols=80 Identities=11% Similarity=0.006 Sum_probs=50.2
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHcCCC-CEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC--C-CCCC
Q psy7826 121 TEGKKVLDIGSGNGYFTALLAWCVGKT-GKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY--L-DEAP 196 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~--~-~~~~ 196 (213)
..+++||=.|+ +|+.+.++++.+-.. .+|++++.+..........+.. ..+++++.+|+.+.. . ....
T Consensus 8 ~~~~~vLVtG~-~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~ 79 (353)
T PLN02896 8 SATGTYCVTGA-TGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE-------GDRLRLFRADLQEEGSFDEAVKG 79 (353)
T ss_pred cCCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc-------CCeEEEEECCCCCHHHHHHHHcC
Confidence 34668888884 789888888866333 4888888766543332222211 246888999987421 0 0124
Q ss_pred cCEEEEcCcCcc
Q psy7826 197 YDIIHVGGSIED 208 (213)
Q Consensus 197 fD~Ii~~~~~~~ 208 (213)
+|.|+-.++...
T Consensus 80 ~d~Vih~A~~~~ 91 (353)
T PLN02896 80 CDGVFHVAASME 91 (353)
T ss_pred CCEEEECCcccc
Confidence 799988887643
No 391
>PRK08264 short chain dehydrogenase; Validated
Probab=75.93 E-value=15 Score=28.70 Aligned_cols=71 Identities=20% Similarity=0.084 Sum_probs=45.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCC-C-EEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC------CC
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKT-G-KVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY------LD 193 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~-~-~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~------~~ 193 (213)
.++++|=.|+ +|..+..+++.+-.. . +|+.++.++...+. . ..++.++.+|+.+.. ..
T Consensus 5 ~~~~vlItGg-sg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~-------~------~~~~~~~~~D~~~~~~~~~~~~~ 70 (238)
T PRK08264 5 KGKVVLVTGA-NRGIGRAFVEQLLARGAAKVYAAARDPESVTD-------L------GPRVVPLQLDVTDPASVAAAAEA 70 (238)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCcccEEEEecChhhhhh-------c------CCceEEEEecCCCHHHHHHHHHh
Confidence 3567888885 677776766654322 3 78888887654432 2 246888889987321 11
Q ss_pred CCCcCEEEEcCcC
Q psy7826 194 EAPYDIIHVGGSI 206 (213)
Q Consensus 194 ~~~fD~Ii~~~~~ 206 (213)
..+.|.|+.+++.
T Consensus 71 ~~~id~vi~~ag~ 83 (238)
T PRK08264 71 ASDVTILVNNAGI 83 (238)
T ss_pred cCCCCEEEECCCc
Confidence 2357999999876
No 392
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.91 E-value=14 Score=29.81 Aligned_cols=79 Identities=13% Similarity=-0.013 Sum_probs=47.1
Q ss_pred CCCEEEEEcC-CccHHHHHHHHHcCCC-CEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC--------
Q psy7826 122 EGKKVLDIGS-GNGYFTALLAWCVGKT-GKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-------- 191 (213)
Q Consensus 122 ~~~~vLDiG~-G~G~~t~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~-------- 191 (213)
.++++|=.|+ |+++++..+++.+... .+|+..+.+....+.+++.....+ ....+++|+.+..
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~Dv~~~~~v~~~~~~ 77 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELD-------SELVFRCDVASDDEINQVFAD 77 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccC-------CceEEECCCCCHHHHHHHHHH
Confidence 4568899997 4667777777665322 477776655333333333333322 3456788887321
Q ss_pred --CCCCCcCEEEEcCcCc
Q psy7826 192 --LDEAPYDIIHVGGSIE 207 (213)
Q Consensus 192 --~~~~~fD~Ii~~~~~~ 207 (213)
...++.|+++.+++..
T Consensus 78 ~~~~~g~iD~lVnnAG~~ 95 (261)
T PRK08690 78 LGKHWDGLDGLVHSIGFA 95 (261)
T ss_pred HHHHhCCCcEEEECCccC
Confidence 0124689999998764
No 393
>PRK07791 short chain dehydrogenase; Provisional
Probab=75.40 E-value=23 Score=29.02 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=47.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCCh---------HHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIP---------QLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY 191 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~---------~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~ 191 (213)
.++++|-.|++.|. +..+++.+- ...+|+.++.+. +.++.+.+.+...+ .++.++.+|+.+..
T Consensus 5 ~~k~~lITGas~GI-G~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~Dv~~~~ 77 (286)
T PRK07791 5 DGRVVIVTGAGGGI-GRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAG------GEAVANGDDIADWD 77 (286)
T ss_pred CCCEEEEECCCchH-HHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcC------CceEEEeCCCCCHH
Confidence 46788988976654 344443331 225788887664 55555555554433 35778888887311
Q ss_pred ----------CCCCCcCEEEEcCcCc
Q psy7826 192 ----------LDEAPYDIIHVGGSIE 207 (213)
Q Consensus 192 ----------~~~~~fD~Ii~~~~~~ 207 (213)
...++.|.++.++++.
T Consensus 78 ~v~~~~~~~~~~~g~id~lv~nAG~~ 103 (286)
T PRK07791 78 GAANLVDAAVETFGGLDVLVNNAGIL 103 (286)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 1124689999998764
No 394
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=75.39 E-value=8.3 Score=26.25 Aligned_cols=13 Identities=23% Similarity=0.393 Sum_probs=9.8
Q ss_pred EcCCccHHHHHHH
Q psy7826 129 IGSGNGYFTALLA 141 (213)
Q Consensus 129 iG~G~G~~t~~la 141 (213)
+.||+|.-|..++
T Consensus 7 vvCgsG~~TS~m~ 19 (94)
T PRK10310 7 VACGGAVATSTMA 19 (94)
T ss_pred EECCCchhHHHHH
Confidence 6789998776663
No 395
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=75.33 E-value=25 Score=27.60 Aligned_cols=80 Identities=19% Similarity=0.142 Sum_probs=51.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC--------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-------- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~-------- 192 (213)
.++++|=.|+ +|..+..+++.+- ...+|++++.++..+....+.+...+ .++.++.+|..+...
T Consensus 5 ~~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dl~~~~~~~~~~~~~ 77 (251)
T PRK12826 5 EGRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG------GKARARQVDVRDRAALKAAVAAG 77 (251)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEECCCCCHHHHHHHHHHH
Confidence 3567887775 5666666665542 22589999988777666655555433 358889999874210
Q ss_pred --CCCCcCEEEEcCcCcc
Q psy7826 193 --DEAPYDIIHVGGSIED 208 (213)
Q Consensus 193 --~~~~fD~Ii~~~~~~~ 208 (213)
..+++|.|+.+.+...
T Consensus 78 ~~~~~~~d~vi~~ag~~~ 95 (251)
T PRK12826 78 VEDFGRLDILVANAGIFP 95 (251)
T ss_pred HHHhCCCCEEEECCCCCC
Confidence 0135899988876543
No 396
>PRK06196 oxidoreductase; Provisional
Probab=75.21 E-value=25 Score=29.17 Aligned_cols=76 Identities=14% Similarity=0.111 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC---------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY--------- 191 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~--------- 191 (213)
.+++||=.|++ |+++..+++.+-. ..+|+.++.++...+.+...+ ..+.++.+|+.+..
T Consensus 25 ~~k~vlITGas-ggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l----------~~v~~~~~Dl~d~~~v~~~~~~~ 93 (315)
T PRK06196 25 SGKTAIVTGGY-SGLGLETTRALAQAGAHVIVPARRPDVAREALAGI----------DGVEVVMLDLADLESVRAFAERF 93 (315)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----------hhCeEEEccCCCHHHHHHHHHHH
Confidence 45688888854 6666666665422 248999998877665544332 23678888887321
Q ss_pred -CCCCCcCEEEEcCcCcc
Q psy7826 192 -LDEAPYDIIHVGGSIED 208 (213)
Q Consensus 192 -~~~~~fD~Ii~~~~~~~ 208 (213)
...+..|+++.+++...
T Consensus 94 ~~~~~~iD~li~nAg~~~ 111 (315)
T PRK06196 94 LDSGRRIDILINNAGVMA 111 (315)
T ss_pred HhcCCCCCEEEECCCCCC
Confidence 01246899999987643
No 397
>PRK12939 short chain dehydrogenase; Provisional
Probab=75.04 E-value=33 Score=26.84 Aligned_cols=79 Identities=16% Similarity=0.124 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC-----C--
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-----D-- 193 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~-----~-- 193 (213)
+++++|=.|+ +|+.+..+++.+.. ..+++.++.+++.++...+.++..+ .++.++.+|+.+... .
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~~ 78 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG------GRAHAIAADLADPASVQRFFDAA 78 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHHHHHHH
Confidence 3567886665 67777777665532 2478889988887776666654433 368899999873210 0
Q ss_pred ---CCCcCEEEEcCcCc
Q psy7826 194 ---EAPYDIIHVGGSIE 207 (213)
Q Consensus 194 ---~~~fD~Ii~~~~~~ 207 (213)
.++.|.|+.+.+..
T Consensus 79 ~~~~~~id~vi~~ag~~ 95 (250)
T PRK12939 79 AAALGGLDGLVNNAGIT 95 (250)
T ss_pred HHHcCCCCEEEECCCCC
Confidence 13689999888653
No 398
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=74.94 E-value=18 Score=33.15 Aligned_cols=87 Identities=9% Similarity=-0.074 Sum_probs=52.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCc---cCCCeEEEEcCCCCCC---C
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFV---KDGRIKFVLGDGRKGY---L 192 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~---~~~~v~~~~~d~~~~~---~ 192 (213)
.+.+.+||-.|+ +|+.+..+++.+- ...+|++++.+.+.++...+.+...++... ...++.++.+|+.+.. .
T Consensus 77 ~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~ 155 (576)
T PLN03209 77 TKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGP 155 (576)
T ss_pred cCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHH
Confidence 346777887776 5777777766542 235899999888877655544432211000 0135889999997421 1
Q ss_pred CCCCcCEEEEcCcCc
Q psy7826 193 DEAPYDIIHVGGSIE 207 (213)
Q Consensus 193 ~~~~fD~Ii~~~~~~ 207 (213)
..+..|+||.+.+..
T Consensus 156 aLggiDiVVn~AG~~ 170 (576)
T PLN03209 156 ALGNASVVICCIGAS 170 (576)
T ss_pred HhcCCCEEEEccccc
Confidence 123579999887543
No 399
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=74.57 E-value=17 Score=29.70 Aligned_cols=49 Identities=31% Similarity=0.313 Sum_probs=40.9
Q ss_pred hCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhC
Q psy7826 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISG 170 (213)
Q Consensus 119 ~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~ 170 (213)
.-.+++.|||-=+|+|.......+. + -+.+|+|+++..++.+.+++...
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~-~--r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNL-G--RRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHc-C--CceEEEecCHHHHHHHHHHHHhh
Confidence 3578899999999999987665544 3 48999999999999999998764
No 400
>PRK05872 short chain dehydrogenase; Provisional
Probab=74.19 E-value=24 Score=29.00 Aligned_cols=79 Identities=18% Similarity=0.122 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC---------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY--------- 191 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~--------- 191 (213)
.++++|-.|++ |+++..+++.+. ...+|+.++.+++.++...+.+.. ...+..+.+|+.+..
T Consensus 8 ~gk~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-------~~~~~~~~~Dv~d~~~v~~~~~~~ 79 (296)
T PRK05872 8 AGKVVVVTGAA-RGIGAELARRLHARGAKLALVDLEEAELAALAAELGG-------DDRVLTVVADVTDLAAMQAAAEEA 79 (296)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-------CCcEEEEEecCCCHHHHHHHHHHH
Confidence 46688888865 455555555442 225899999998877666555432 124556668876321
Q ss_pred -CCCCCcCEEEEcCcCcc
Q psy7826 192 -LDEAPYDIIHVGGSIED 208 (213)
Q Consensus 192 -~~~~~fD~Ii~~~~~~~ 208 (213)
...++.|+++.+++...
T Consensus 80 ~~~~g~id~vI~nAG~~~ 97 (296)
T PRK05872 80 VERFGGIDVVVANAGIAS 97 (296)
T ss_pred HHHcCCCCEEEECCCcCC
Confidence 01146899999988643
No 401
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=74.13 E-value=34 Score=26.91 Aligned_cols=78 Identities=15% Similarity=0.153 Sum_probs=51.2
Q ss_pred CEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC----------C
Q psy7826 124 KKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY----------L 192 (213)
Q Consensus 124 ~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~----------~ 192 (213)
+++|=.| |+|+++..+++.+- ...+|++++.++...+.....+...+ .++.++.+|+.+.. .
T Consensus 2 ~~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (255)
T TIGR01963 2 KTALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG------GSVIYLVADVTKEDEIADMIAAAAA 74 (255)
T ss_pred CEEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CceEEEECCCCCHHHHHHHHHHHHH
Confidence 3566666 56777777776642 22489999998877766666554433 36888999987421 0
Q ss_pred CCCCcCEEEEcCcCcc
Q psy7826 193 DEAPYDIIHVGGSIED 208 (213)
Q Consensus 193 ~~~~fD~Ii~~~~~~~ 208 (213)
...+.|.|+.+++...
T Consensus 75 ~~~~~d~vi~~a~~~~ 90 (255)
T TIGR01963 75 EFGGLDILVNNAGIQH 90 (255)
T ss_pred hcCCCCEEEECCCCCC
Confidence 1235799998886543
No 402
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=74.01 E-value=25 Score=27.95 Aligned_cols=75 Identities=16% Similarity=0.022 Sum_probs=48.1
Q ss_pred CCEEEEEcCCccHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC---------
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL--------- 192 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~--------- 192 (213)
++++|=.| |+|+++..+++.+-. ..+|+.++.+....+...+.. ..++.++.+|+.+...
T Consensus 6 ~~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (257)
T PRK07067 6 GKVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALEI---------GPAAIAVSLDVTRQDSIDRIVAAAV 75 (257)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh---------CCceEEEEccCCCHHHHHHHHHHHH
Confidence 45788777 556667777665532 248999999887766554432 1357888888863211
Q ss_pred -CCCCcCEEEEcCcCc
Q psy7826 193 -DEAPYDIIHVGGSIE 207 (213)
Q Consensus 193 -~~~~fD~Ii~~~~~~ 207 (213)
..++.|.++.+++..
T Consensus 76 ~~~~~id~li~~ag~~ 91 (257)
T PRK07067 76 ERFGGIDILFNNAALF 91 (257)
T ss_pred HHcCCCCEEEECCCcC
Confidence 013579999887654
No 403
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=73.98 E-value=11 Score=26.90 Aligned_cols=67 Identities=19% Similarity=0.186 Sum_probs=43.1
Q ss_pred CEEEEEcCCccH-HHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCC-CCCcCEEE
Q psy7826 124 KKVLDIGSGNGY-FTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLD-EAPYDIIH 201 (213)
Q Consensus 124 ~~vLDiG~G~G~-~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii 201 (213)
.+|.|+|.|-=. .+..|+++ | ..++++|+++. +. ...+.++..|++.+... -..-|+|+
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~-g--~dv~atDI~~~-------~a---------~~g~~~v~DDitnP~~~iY~~A~lIY 75 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAER-G--FDVLATDINEK-------TA---------PEGLRFVVDDITNPNISIYEGADLIY 75 (129)
T ss_pred CcEEEEccchHHHHHHHHHHc-C--CcEEEEecccc-------cC---------cccceEEEccCCCccHHHhhCcccee
Confidence 389999986543 33445554 3 68999999975 21 12468999999864322 12358888
Q ss_pred EcCcCccC
Q psy7826 202 VGGSIEDI 209 (213)
Q Consensus 202 ~~~~~~~~ 209 (213)
+--.+..+
T Consensus 76 SiRpppEl 83 (129)
T COG1255 76 SIRPPPEL 83 (129)
T ss_pred ecCCCHHH
Confidence 87655443
No 404
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=73.82 E-value=31 Score=27.29 Aligned_cols=79 Identities=18% Similarity=0.130 Sum_probs=51.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC---------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY--------- 191 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~--------- 191 (213)
.++++|=.|++ |.++..+++.+-. ..+|+.++.++..++...+.+...+ .++.++.+|+.+..
T Consensus 8 ~~k~~lItGas-~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dl~~~~~~~~~~~~~ 80 (254)
T PRK08085 8 AGKNILITGSA-QGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEG------IKAHAAPFNVTHKQEVEAAIEHI 80 (254)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC------CeEEEEecCCCCHHHHHHHHHHH
Confidence 35678888855 5555555555422 2589999998887776666655433 35777888886321
Q ss_pred -CCCCCcCEEEEcCcCc
Q psy7826 192 -LDEAPYDIIHVGGSIE 207 (213)
Q Consensus 192 -~~~~~fD~Ii~~~~~~ 207 (213)
...+++|.++.+++..
T Consensus 81 ~~~~~~id~vi~~ag~~ 97 (254)
T PRK08085 81 EKDIGPIDVLINNAGIQ 97 (254)
T ss_pred HHhcCCCCEEEECCCcC
Confidence 0124689999988753
No 405
>PRK07102 short chain dehydrogenase; Provisional
Probab=73.79 E-value=26 Score=27.55 Aligned_cols=77 Identities=16% Similarity=0.045 Sum_probs=49.5
Q ss_pred CEEEEEcCCccHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC-----C--CC
Q psy7826 124 KKVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-----D--EA 195 (213)
Q Consensus 124 ~~vLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~-----~--~~ 195 (213)
++++-.|+ +|+.+..+++.+-. ..+|+.++.++...+...+.+...+ ..++.++.+|+.+... . ..
T Consensus 2 ~~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~ 75 (243)
T PRK07102 2 KKILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRARG-----AVAVSTHELDILDTASHAAFLDSLPA 75 (243)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc-----CCeEEEEecCCCChHHHHHHHHHHhh
Confidence 36777774 56666666665532 2489999999887766555544333 3578999999874211 0 12
Q ss_pred CcCEEEEcCcC
Q psy7826 196 PYDIIHVGGSI 206 (213)
Q Consensus 196 ~fD~Ii~~~~~ 206 (213)
.+|.++.+...
T Consensus 76 ~~d~vv~~ag~ 86 (243)
T PRK07102 76 LPDIVLIAVGT 86 (243)
T ss_pred cCCEEEECCcC
Confidence 47999987653
No 406
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.67 E-value=16 Score=29.34 Aligned_cols=78 Identities=12% Similarity=0.015 Sum_probs=46.7
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHcCCC-CEEEEEeCCh---HHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC-----
Q psy7826 122 EGKKVLDIGSGN-GYFTALLAWCVGKT-GKVIGIEHIP---QLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY----- 191 (213)
Q Consensus 122 ~~~~vLDiG~G~-G~~t~~la~~~~~~-~~v~gvD~s~---~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~----- 191 (213)
.++++|=.|+++ ++.+..+++.+-.. .+|+.++.+. +.++...+.. . ..++.++.+|+.+..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~---~-----~~~~~~~~~Dv~d~~~v~~~ 77 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTL---E-----GQESLLLPCDVTSDEEITAC 77 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHc---C-----CCceEEEecCCCCHHHHHHH
Confidence 467899999873 66677776655322 4787776542 3333333222 1 135778888987321
Q ss_pred -----CCCCCcCEEEEcCcCc
Q psy7826 192 -----LDEAPYDIIHVGGSIE 207 (213)
Q Consensus 192 -----~~~~~fD~Ii~~~~~~ 207 (213)
...+++|+++.++...
T Consensus 78 ~~~~~~~~g~ld~lv~nag~~ 98 (257)
T PRK08594 78 FETIKEEVGVIHGVAHCIAFA 98 (257)
T ss_pred HHHHHHhCCCccEEEECcccC
Confidence 0125689999887654
No 407
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=73.59 E-value=11 Score=31.80 Aligned_cols=45 Identities=20% Similarity=0.310 Sum_probs=33.8
Q ss_pred CCCCCEEEEEcCC-ccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHH
Q psy7826 120 LTEGKKVLDIGSG-NGYFTALLAWCVGKTGKVIGIEHIPQLVQRATH 165 (213)
Q Consensus 120 ~~~~~~vLDiG~G-~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 165 (213)
..++++||=.||| .|..+..+++..|. .+|+++|.+++.++.+++
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~-~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGA-AEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEEeCCHHHHHHHHH
Confidence 4468899988876 35566777887642 379999999999888765
No 408
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=73.41 E-value=30 Score=28.72 Aligned_cols=79 Identities=11% Similarity=-0.014 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC-----C---
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-----L--- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~-----~--- 192 (213)
+++++|=.|+. |+++..+++.+- ...+|+.++.+....+.+.+.+... ..++.++.+|+.+.. .
T Consensus 5 ~~k~vlVTGas-~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~~~v~~~~~~~ 77 (322)
T PRK07453 5 AKGTVIITGAS-SGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIP------PDSYTIIHIDLGDLDSVRRFVDDF 77 (322)
T ss_pred CCCEEEEEcCC-ChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcc------CCceEEEEecCCCHHHHHHHHHHH
Confidence 35678888764 556666655442 2258999998887766655554321 236888889986321 0
Q ss_pred --CCCCcCEEEEcCcCc
Q psy7826 193 --DEAPYDIIHVGGSIE 207 (213)
Q Consensus 193 --~~~~fD~Ii~~~~~~ 207 (213)
..++.|+++.+++..
T Consensus 78 ~~~~~~iD~li~nAg~~ 94 (322)
T PRK07453 78 RALGKPLDALVCNAAVY 94 (322)
T ss_pred HHhCCCccEEEECCccc
Confidence 113589999998753
No 409
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.26 E-value=21 Score=28.88 Aligned_cols=79 Identities=13% Similarity=0.004 Sum_probs=45.5
Q ss_pred CCCEEEEEcCCcc-HHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC--------
Q psy7826 122 EGKKVLDIGSGNG-YFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-------- 191 (213)
Q Consensus 122 ~~~~vLDiG~G~G-~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~-------- 191 (213)
.++++|=.|++.| +.+..+++.+-. ..+|+.++.+....+.+.+.... ...+.++.+|+.+..
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~v~~~~~~ 77 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQ-------LGSDIVLPCDVAEDASIDAMFAE 77 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhc-------cCCceEeecCCCCHHHHHHHHHH
Confidence 3568899998863 666665555422 24788777763222222222222 124567788887311
Q ss_pred --CCCCCcCEEEEcCcCc
Q psy7826 192 --LDEAPYDIIHVGGSIE 207 (213)
Q Consensus 192 --~~~~~fD~Ii~~~~~~ 207 (213)
...+++|+++.+++..
T Consensus 78 ~~~~~g~iD~linnAg~~ 95 (262)
T PRK07984 78 LGKVWPKFDGFVHSIGFA 95 (262)
T ss_pred HHhhcCCCCEEEECCccC
Confidence 1124689999999754
No 410
>PRK05855 short chain dehydrogenase; Validated
Probab=73.23 E-value=29 Score=31.12 Aligned_cols=79 Identities=14% Similarity=0.080 Sum_probs=53.3
Q ss_pred CCEEEEEcCCccHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC---------
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL--------- 192 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~--------- 192 (213)
+.++|=+|+ +|+++..+++.+.. ..+|+.++.+...++...+.++..+ .++.++.+|+.+...
T Consensus 315 ~~~~lv~G~-s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dv~~~~~~~~~~~~~~ 387 (582)
T PRK05855 315 GKLVVVTGA-GSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAG------AVAHAYRVDVSDADAMEAFAEWVR 387 (582)
T ss_pred CCEEEEECC-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEEcCCCCHHHHHHHHHHHH
Confidence 356777776 56666666655532 2479999999888877766665544 368889999874210
Q ss_pred -CCCCcCEEEEcCcCcc
Q psy7826 193 -DEAPYDIIHVGGSIED 208 (213)
Q Consensus 193 -~~~~fD~Ii~~~~~~~ 208 (213)
..+..|+++.+++...
T Consensus 388 ~~~g~id~lv~~Ag~~~ 404 (582)
T PRK05855 388 AEHGVPDIVVNNAGIGM 404 (582)
T ss_pred HhcCCCcEEEECCccCC
Confidence 1235899999988643
No 411
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=73.18 E-value=6.4 Score=27.79 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=28.3
Q ss_pred CccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHH
Q psy7826 132 GNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN 166 (213)
Q Consensus 132 G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~ 166 (213)
|.|..+..+|+.+| .+|+++|.++..++.+++.
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~ 33 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKEL 33 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHT
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhh
Confidence 45888999999986 7999999999998887764
No 412
>PRK05875 short chain dehydrogenase; Provisional
Probab=73.05 E-value=33 Score=27.54 Aligned_cols=80 Identities=13% Similarity=0.077 Sum_probs=50.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC-----C--
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-----D-- 193 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~-----~-- 193 (213)
+++++|=.|++ |+.+..+++.+-. ..+|++++.++...+...+.+...+- ..++.++.+|+.+... .
T Consensus 6 ~~k~vlItGas-g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (276)
T PRK05875 6 QDRTYLVTGGG-SGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKG----AGAVRYEPADVTDEDQVARAVDAA 80 (276)
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccC----CCceEEEEcCCCCHHHHHHHHHHH
Confidence 35688988864 5566666665422 24899999887766655555443220 1467888899863210 0
Q ss_pred ---CCCcCEEEEcCcC
Q psy7826 194 ---EAPYDIIHVGGSI 206 (213)
Q Consensus 194 ---~~~fD~Ii~~~~~ 206 (213)
.+..|.++.+++.
T Consensus 81 ~~~~~~~d~li~~ag~ 96 (276)
T PRK05875 81 TAWHGRLHGVVHCAGG 96 (276)
T ss_pred HHHcCCCCEEEECCCc
Confidence 1257999988864
No 413
>PRK12829 short chain dehydrogenase; Provisional
Probab=73.01 E-value=30 Score=27.44 Aligned_cols=78 Identities=12% Similarity=0.093 Sum_probs=49.9
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC-------
Q psy7826 121 TEGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL------- 192 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~------- 192 (213)
-+++++|-.|++ |+.+..+++.+- ...+|++++.++...+...+...+ . ++.++.+|+.+...
T Consensus 9 ~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-------~-~~~~~~~D~~~~~~~~~~~~~ 79 (264)
T PRK12829 9 LDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG-------A-KVTATVADVADPAQVERVFDT 79 (264)
T ss_pred cCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-------C-ceEEEEccCCCHHHHHHHHHH
Confidence 456789988875 666666665542 225899999887766554444321 2 56788888873210
Q ss_pred ---CCCCcCEEEEcCcCc
Q psy7826 193 ---DEAPYDIIHVGGSIE 207 (213)
Q Consensus 193 ---~~~~fD~Ii~~~~~~ 207 (213)
...++|.|+.+++..
T Consensus 80 ~~~~~~~~d~vi~~ag~~ 97 (264)
T PRK12829 80 AVERFGGLDVLVNNAGIA 97 (264)
T ss_pred HHHHhCCCCEEEECCCCC
Confidence 013689999888754
No 414
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=73.00 E-value=34 Score=26.88 Aligned_cols=77 Identities=17% Similarity=0.116 Sum_probs=47.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCC-CEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC--------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKT-GKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-------- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~-------- 192 (213)
.++++|=.|++ |+.+..+++.+-.. .+|+.++.++ ...+.+.+...+ .++.++.+|+.+...
T Consensus 4 ~~k~vlItGas-~gIG~~ia~~l~~~G~~vi~~~r~~--~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~ 74 (248)
T TIGR01832 4 EGKVALVTGAN-TGLGQGIAVGLAEAGADIVGAGRSE--PSETQQQVEALG------RRFLSLTADLSDIEAIKALVDSA 74 (248)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCch--HHHHHHHHHhcC------CceEEEECCCCCHHHHHHHHHHH
Confidence 46788888885 44555665554222 4888888764 233334444433 367888999873210
Q ss_pred --CCCCcCEEEEcCcCc
Q psy7826 193 --DEAPYDIIHVGGSIE 207 (213)
Q Consensus 193 --~~~~fD~Ii~~~~~~ 207 (213)
..+..|.++.+++..
T Consensus 75 ~~~~~~~d~li~~ag~~ 91 (248)
T TIGR01832 75 VEEFGHIDILVNNAGII 91 (248)
T ss_pred HHHcCCCCEEEECCCCC
Confidence 113589999988764
No 415
>KOG1209|consensus
Probab=72.86 E-value=28 Score=27.99 Aligned_cols=76 Identities=18% Similarity=0.047 Sum_probs=46.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCC-CEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCC----------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKT-GKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKG---------- 190 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~---------- 190 (213)
....||-.||..|+.+-.+++.+-.+ ..|++.-.+-+...... .+.| +.....|+..+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~---~~~g--------l~~~kLDV~~~~~V~~v~~ev 74 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLA---IQFG--------LKPYKLDVSKPEEVVTVSGEV 74 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHH---HhhC--------CeeEEeccCChHHHHHHHHHH
Confidence 34589999999999999998876433 48888754443332222 1222 23444444311
Q ss_pred -CCCCCCcCEEEEcCcCcc
Q psy7826 191 -YLDEAPYDIIHVGGSIED 208 (213)
Q Consensus 191 -~~~~~~fD~Ii~~~~~~~ 208 (213)
-.++++.|+.+.|+....
T Consensus 75 r~~~~Gkld~L~NNAG~~C 93 (289)
T KOG1209|consen 75 RANPDGKLDLLYNNAGQSC 93 (289)
T ss_pred hhCCCCceEEEEcCCCCCc
Confidence 113568899998887544
No 416
>KOG1205|consensus
Probab=72.80 E-value=25 Score=29.19 Aligned_cols=83 Identities=16% Similarity=0.096 Sum_probs=55.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC----------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY---------- 191 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~---------- 191 (213)
.++.||=-||.+|.-....-+......+++-+-...+.++...+.+++.+- ..++..+++|+.+..
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~----~~~v~~~~~Dvs~~~~~~~~~~~~~ 86 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGS----LEKVLVLQLDVSDEESVKKFVEWAI 86 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCC----cCccEEEeCccCCHHHHHHHHHHHH
Confidence 467899999988863322222211224677777888888888777766652 224999999998321
Q ss_pred CCCCCcCEEEEcCcCcc
Q psy7826 192 LDEAPYDIIHVGGSIED 208 (213)
Q Consensus 192 ~~~~~fD~Ii~~~~~~~ 208 (213)
..-+..|+.+.|++...
T Consensus 87 ~~fg~vDvLVNNAG~~~ 103 (282)
T KOG1205|consen 87 RHFGRVDVLVNNAGISL 103 (282)
T ss_pred HhcCCCCEEEecCcccc
Confidence 12356899999998765
No 417
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=72.75 E-value=26 Score=27.57 Aligned_cols=44 Identities=32% Similarity=0.487 Sum_probs=34.8
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHcCCCCEEEEEeCChHHHHHHHH
Q psy7826 120 LTEGKKVLDIGSGN-GYFTALLAWCVGKTGKVIGIEHIPQLVQRATH 165 (213)
Q Consensus 120 ~~~~~~vLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 165 (213)
..++.+||-.|+|+ |..+..+++..+ .+|++++.++...+.+++
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH
Confidence 36788999999986 667777888764 689999999887777654
No 418
>PRK09135 pteridine reductase; Provisional
Probab=72.63 E-value=38 Score=26.43 Aligned_cols=80 Identities=14% Similarity=-0.044 Sum_probs=49.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCC-hHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC-----C-
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHI-PQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-----D- 193 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s-~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~-----~- 193 (213)
.+.++|=.|+ +|+.+.++++.+- ...+|++++.+ +...+...+.+...+ ...+.++.+|+.+... .
T Consensus 5 ~~~~vlItGa-~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~ 78 (249)
T PRK09135 5 SAKVALITGG-ARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALR-----PGSAAALQADLLDPDALPELVAA 78 (249)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhc-----CCceEEEEcCCCCHHHHHHHHHH
Confidence 3467999996 5777777766542 23589999875 333444444443322 2357889999873210 0
Q ss_pred ----CCCcCEEEEcCcCc
Q psy7826 194 ----EAPYDIIHVGGSIE 207 (213)
Q Consensus 194 ----~~~fD~Ii~~~~~~ 207 (213)
.+..|.|+.+++..
T Consensus 79 ~~~~~~~~d~vi~~ag~~ 96 (249)
T PRK09135 79 CVAAFGRLDALVNNASSF 96 (249)
T ss_pred HHHHcCCCCEEEECCCCC
Confidence 12579999888753
No 419
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=72.16 E-value=23 Score=29.22 Aligned_cols=44 Identities=27% Similarity=0.393 Sum_probs=34.6
Q ss_pred CCCCCEEEEEcCC-ccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHH
Q psy7826 120 LTEGKKVLDIGSG-NGYFTALLAWCVGKTGKVIGIEHIPQLVQRATH 165 (213)
Q Consensus 120 ~~~~~~vLDiG~G-~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 165 (213)
+.++.+||..|+| .|..+..+|+..| .+|++++.++...+.+++
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH
Confidence 5678889888876 4778888888864 579999999988877654
No 420
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=72.07 E-value=11 Score=33.18 Aligned_cols=43 Identities=28% Similarity=0.214 Sum_probs=33.3
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHcCCCCEEEEEeCChHHHHHHHH
Q psy7826 121 TEGKKVLDIGSGN-GYFTALLAWCVGKTGKVIGIEHIPQLVQRATH 165 (213)
Q Consensus 121 ~~~~~vLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 165 (213)
.+|++|+=+|+|+ |......++.+| .+|+.+|.++.+.+.|+.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~G--a~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQG--ARVIVTEVDPICALQAAM 243 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECChhhHHHHHh
Confidence 4789999999996 555566666665 589999999988777654
No 421
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.04 E-value=35 Score=26.54 Aligned_cols=77 Identities=21% Similarity=0.130 Sum_probs=49.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC--------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-------- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~-------- 192 (213)
.+++||-.|++ |..+..+++.+- ...+|++++.++...+.+.+..... .++.++.+|+.+...
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~Dl~~~~~~~~~~~~~ 75 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY-------GNIHYVVGDVSSTESARNVIEKA 75 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CCeEEEECCCCCHHHHHHHHHHH
Confidence 35688999985 555555555442 2358999999887776655554432 267888899873210
Q ss_pred --CCCCcCEEEEcCcC
Q psy7826 193 --DEAPYDIIHVGGSI 206 (213)
Q Consensus 193 --~~~~fD~Ii~~~~~ 206 (213)
..+.+|.++.+.+.
T Consensus 76 ~~~~~~id~ii~~ag~ 91 (238)
T PRK05786 76 AKVLNAIDGLVVTVGG 91 (238)
T ss_pred HHHhCCCCEEEEcCCC
Confidence 01246888877754
No 422
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=72.01 E-value=17 Score=31.16 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=39.2
Q ss_pred HHHHHhhhCCCCCEEEEEcCCc-cHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHH
Q psy7826 112 VLDDLSEELTEGKKVLDIGSGN-GYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN 166 (213)
Q Consensus 112 ~~~~l~~~~~~~~~vLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~ 166 (213)
++..+ ..++|.+|.=+|||- |..+..-|... ...+|+++|++++.++.|++-
T Consensus 177 v~nta--~v~~G~tvaV~GlGgVGlaaI~gA~~a-gA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 177 VVNTA--KVEPGDTVAVFGLGGVGLAAIQGAKAA-GAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred hhhcc--cCCCCCeEEEEeccHhHHHHHHHHHHc-CCceEEEEeCCHHHHHHHHhc
Confidence 44444 588999999999985 44444555554 446999999999999998865
No 423
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=71.98 E-value=13 Score=26.94 Aligned_cols=70 Identities=20% Similarity=0.141 Sum_probs=35.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCC-CCCcCEE
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLD-EAPYDII 200 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~-~~~fD~I 200 (213)
+..+|+|+|-|.=...+...+..| ..|+++|+++. ++. ..+.++..|+.++... -...|+|
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G--~dV~~tDi~~~-------~a~---------~g~~~v~DDif~P~l~iY~~a~lI 74 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERG--FDVIATDINPR-------KAP---------EGVNFVVDDIFNPNLEIYEGADLI 74 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS---EEEEE-SS-S--------------------STTEE---SSS--HHHHTTEEEE
T ss_pred CCCcEEEECcCCCHHHHHHHHHcC--CcEEEEECccc-------ccc---------cCcceeeecccCCCHHHhcCCcEE
Confidence 344999999987765544444434 69999999986 211 2456888998864332 1246899
Q ss_pred EEcCcCccC
Q psy7826 201 HVGGSIEDI 209 (213)
Q Consensus 201 i~~~~~~~~ 209 (213)
++--.+..+
T Consensus 75 YSiRPP~El 83 (127)
T PF03686_consen 75 YSIRPPPEL 83 (127)
T ss_dssp EEES--TTS
T ss_pred EEeCCChHH
Confidence 887665554
No 424
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=71.81 E-value=55 Score=26.94 Aligned_cols=84 Identities=14% Similarity=0.162 Sum_probs=57.7
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC-------
Q psy7826 121 TEGKKVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL------- 192 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~------- 192 (213)
..+.++|=-|+..|. +..+|+.+-. ..+++-+-.+++.++..++.++... .-.+.++..|+.++..
T Consensus 4 ~~~~~~lITGASsGI-G~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~-----~v~v~vi~~DLs~~~~~~~l~~~ 77 (265)
T COG0300 4 MKGKTALITGASSGI-GAELAKQLARRGYNLILVARREDKLEALAKELEDKT-----GVEVEVIPADLSDPEALERLEDE 77 (265)
T ss_pred CCCcEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhh-----CceEEEEECcCCChhHHHHHHHH
Confidence 345678888876554 4444444322 2589999999999999998887543 2368899999874311
Q ss_pred ---CCCCcCEEEEcCcCccCC
Q psy7826 193 ---DEAPYDIIHVGGSIEDIP 210 (213)
Q Consensus 193 ---~~~~fD~Ii~~~~~~~~p 210 (213)
.....|+.+.|+.....-
T Consensus 78 l~~~~~~IdvLVNNAG~g~~g 98 (265)
T COG0300 78 LKERGGPIDVLVNNAGFGTFG 98 (265)
T ss_pred HHhcCCcccEEEECCCcCCcc
Confidence 113689999999876543
No 425
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=71.63 E-value=10 Score=26.46 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=13.9
Q ss_pred EEEEEcCCccHHHHHHHHHc
Q psy7826 125 KVLDIGSGNGYFTALLAWCV 144 (213)
Q Consensus 125 ~vLDiG~G~G~~t~~la~~~ 144 (213)
+|| ++||.|..|..+++.+
T Consensus 3 kIL-lvCg~G~STSlla~k~ 21 (104)
T PRK09590 3 KAL-IICAAGMSSSMMAKKT 21 (104)
T ss_pred EEE-EECCCchHHHHHHHHH
Confidence 344 7899999887777654
No 426
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=71.61 E-value=34 Score=27.21 Aligned_cols=78 Identities=14% Similarity=0.150 Sum_probs=45.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC-----C---
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-----L--- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~-----~--- 192 (213)
.++++|-.|++. +++..+++.+- ...+|+.++.+.. +...+..+..+ .++.++.+|+.+.. .
T Consensus 7 ~~k~~lItGas~-gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~~ 77 (251)
T PRK12481 7 NGKVAIITGCNT-GLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALG------RKFHFITADLIQQKDIDSIVSQA 77 (251)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcC------CeEEEEEeCCCCHHHHHHHHHHH
Confidence 467889888755 45555554432 2357888776532 22333333333 36788899987321 0
Q ss_pred --CCCCcCEEEEcCcCcc
Q psy7826 193 --DEAPYDIIHVGGSIED 208 (213)
Q Consensus 193 --~~~~fD~Ii~~~~~~~ 208 (213)
..++.|+++.++....
T Consensus 78 ~~~~g~iD~lv~~ag~~~ 95 (251)
T PRK12481 78 VEVMGHIDILINNAGIIR 95 (251)
T ss_pred HHHcCCCCEEEECCCcCC
Confidence 1246899999887643
No 427
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=71.49 E-value=7.5 Score=31.79 Aligned_cols=87 Identities=17% Similarity=0.164 Sum_probs=47.8
Q ss_pred CCCCEEEEEcCCccHHHHHHH-HHcCCCCEEEEEeCChHHHHHHHHHHhhCCC-CCc---------------------cC
Q psy7826 121 TEGKKVLDIGSGNGYFTALLA-WCVGKTGKVIGIEHIPQLVQRATHNVISGNP-EFV---------------------KD 177 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~la-~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl-~~~---------------------~~ 177 (213)
.+|.++||+|||+-.+-..-| +.+ .+|+..|..+.-.+..++-++..+- .|- ..
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f---~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~l 131 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWF---EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKL 131 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTE---EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhh---cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHH
Confidence 356789999999966543323 222 4799999999888766655443211 000 00
Q ss_pred -CCe-EEEEcCCCCCCCCC------CCcCEEEEcCcCccCC
Q psy7826 178 -GRI-KFVLGDGRKGYLDE------APYDIIHVGGSIEDIP 210 (213)
Q Consensus 178 -~~v-~~~~~d~~~~~~~~------~~fD~Ii~~~~~~~~p 210 (213)
..| .++.+|+....+-. .+||+|++.+.++...
T Consensus 132 R~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~ 172 (256)
T PF01234_consen 132 RRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESAC 172 (256)
T ss_dssp HHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-
T ss_pred HHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHc
Confidence 123 37789998433211 2499999998776543
No 428
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=71.37 E-value=37 Score=26.90 Aligned_cols=77 Identities=13% Similarity=0.060 Sum_probs=45.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC---------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY--------- 191 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~--------- 191 (213)
.++++|=.|++ |+++..+++.+- ...+|+.++.++. .....+.+...+ .++.++.+|+.+..
T Consensus 7 ~~k~vlVtGas-~gIG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~ 78 (260)
T PRK12823 7 AGKVVVVTGAA-QGIGRGVALRAAAEGARVVLVDRSEL-VHEVAAELRAAG------GEALALTADLETYAGAQAAMAAA 78 (260)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCchH-HHHHHHHHHhcC------CeEEEEEEeCCCHHHHHHHHHHH
Confidence 35678888865 555555555442 2258999998754 333333443333 35778888887421
Q ss_pred -CCCCCcCEEEEcCcC
Q psy7826 192 -LDEAPYDIIHVGGSI 206 (213)
Q Consensus 192 -~~~~~fD~Ii~~~~~ 206 (213)
...+.+|.++.++..
T Consensus 79 ~~~~~~id~lv~nAg~ 94 (260)
T PRK12823 79 VEAFGRIDVLINNVGG 94 (260)
T ss_pred HHHcCCCeEEEECCcc
Confidence 011368999998864
No 429
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.35 E-value=44 Score=26.08 Aligned_cols=78 Identities=14% Similarity=0.082 Sum_probs=51.5
Q ss_pred CCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC---------
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL--------- 192 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~--------- 192 (213)
+.++|-.|+ +|+++..+++.+- ...+|+.++.++...+.....+...+ .++.++.+|......
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~ 79 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG------VKVVIATADVSDYEEVTAAIEQLK 79 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC------CeEEEEECCCCCHHHHHHHHHHHH
Confidence 457888885 6777777766542 23589999998877666555554433 368888999863210
Q ss_pred -CCCCcCEEEEcCcCc
Q psy7826 193 -DEAPYDIIHVGGSIE 207 (213)
Q Consensus 193 -~~~~fD~Ii~~~~~~ 207 (213)
..+..|.|+.++...
T Consensus 80 ~~~~~id~vi~~ag~~ 95 (239)
T PRK07666 80 NELGSIDILINNAGIS 95 (239)
T ss_pred HHcCCccEEEEcCccc
Confidence 113579999887654
No 430
>PRK08267 short chain dehydrogenase; Provisional
Probab=71.32 E-value=40 Score=26.79 Aligned_cols=75 Identities=9% Similarity=-0.049 Sum_probs=48.0
Q ss_pred EEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC------C---C-
Q psy7826 125 KVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY------L---D- 193 (213)
Q Consensus 125 ~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~------~---~- 193 (213)
++|-.|++ |+.+..+++.+- ...+|+.++.++..++...+... + .++.++.+|+.+.. . .
T Consensus 3 ~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~------~~~~~~~~D~~~~~~v~~~~~~~~~~ 73 (260)
T PRK08267 3 SIFITGAA-SGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--A------GNAWTGALDVTDRAAWDAALADFAAA 73 (260)
T ss_pred EEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--C------CceEEEEecCCCHHHHHHHHHHHHHH
Confidence 57777765 555555555432 22489999998887766655432 1 36889999987321 0 0
Q ss_pred -CCCcCEEEEcCcCcc
Q psy7826 194 -EAPYDIIHVGGSIED 208 (213)
Q Consensus 194 -~~~fD~Ii~~~~~~~ 208 (213)
.+++|.|+.+++...
T Consensus 74 ~~~~id~vi~~ag~~~ 89 (260)
T PRK08267 74 TGGRLDVLFNNAGILR 89 (260)
T ss_pred cCCCCCEEEECCCCCC
Confidence 246899999887643
No 431
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=71.17 E-value=40 Score=26.79 Aligned_cols=78 Identities=17% Similarity=0.134 Sum_probs=47.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC--------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-------- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~-------- 192 (213)
.++++|=.|++.| ++..+++.+- ...+|+.++.+ ...+.+.+.+...+ .++.++.+|+.+...
T Consensus 14 ~~k~vlItGas~g-IG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~i~~~~~~~ 85 (258)
T PRK06935 14 DGKVAIVTGGNTG-LGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEG------RKVTFVQVDLTKPESAEKVVKEA 85 (258)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcC------CceEEEEcCCCCHHHHHHHHHHH
Confidence 4678888888654 4445544432 22578888776 44444454444433 367888999873210
Q ss_pred --CCCCcCEEEEcCcCc
Q psy7826 193 --DEAPYDIIHVGGSIE 207 (213)
Q Consensus 193 --~~~~fD~Ii~~~~~~ 207 (213)
..+..|.++.+++..
T Consensus 86 ~~~~g~id~li~~ag~~ 102 (258)
T PRK06935 86 LEEFGKIDILVNNAGTI 102 (258)
T ss_pred HHHcCCCCEEEECCCCC
Confidence 013589999988754
No 432
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=70.77 E-value=3.4 Score=31.94 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=18.7
Q ss_pred CccHHHHHHHHHcCCC-CEEEEEeCChHHHHHHHH
Q psy7826 132 GNGYFTALLAWCVGKT-GKVIGIEHIPQLVQRATH 165 (213)
Q Consensus 132 G~G~~t~~la~~~~~~-~~v~gvD~s~~~l~~a~~ 165 (213)
|.|+.+..+|..+-.. .+|+|+|++++.++..++
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~ 41 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNN 41 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHT
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhh
Confidence 4455444444333212 599999999998877663
No 433
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=70.76 E-value=9.5 Score=34.73 Aligned_cols=64 Identities=19% Similarity=0.118 Sum_probs=41.8
Q ss_pred EEEEEcCCccHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC----CCCCCcCE
Q psy7826 125 KVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY----LDEAPYDI 199 (213)
Q Consensus 125 ~vLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~----~~~~~fD~ 199 (213)
+++=+ |.|..+..+++.+.. ...++.+|.+++.++.+++. ....+.+|..+.. ..-+..|.
T Consensus 419 hiiI~--G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~------------g~~~i~GD~~~~~~L~~a~i~~a~~ 484 (558)
T PRK10669 419 HALLV--GYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER------------GIRAVLGNAANEEIMQLAHLDCARW 484 (558)
T ss_pred CEEEE--CCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC------------CCeEEEcCCCCHHHHHhcCccccCE
Confidence 45554 556677777776532 24799999999988887642 3578889987421 12235786
Q ss_pred EEE
Q psy7826 200 IHV 202 (213)
Q Consensus 200 Ii~ 202 (213)
+++
T Consensus 485 viv 487 (558)
T PRK10669 485 LLL 487 (558)
T ss_pred EEE
Confidence 654
No 434
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=70.68 E-value=14 Score=30.92 Aligned_cols=45 Identities=22% Similarity=0.166 Sum_probs=33.8
Q ss_pred hCCCCCEEEEEcCC-ccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHH
Q psy7826 119 ELTEGKKVLDIGSG-NGYFTALLAWCVGKTGKVIGIEHIPQLVQRATH 165 (213)
Q Consensus 119 ~~~~~~~vLDiG~G-~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 165 (213)
.++++++||=.|+| .|..+..+|+..| .+|++++.+++.++.+++
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~~~a~~ 207 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAARRLALA 207 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHH
Confidence 46788999999975 3445566777764 579999999988777665
No 435
>PRK08226 short chain dehydrogenase; Provisional
Probab=70.63 E-value=48 Score=26.30 Aligned_cols=79 Identities=19% Similarity=0.158 Sum_probs=47.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC--------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-------- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~-------- 192 (213)
.++++|=.|+. |+.+..+++.+- ...+|+.++.++...+.+.+. ...+ .++.++.+|+.+...
T Consensus 5 ~~~~~lItG~s-~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~-~~~~------~~~~~~~~Dl~~~~~v~~~~~~~ 76 (263)
T PRK08226 5 TGKTALITGAL-QGIGEGIARVFARHGANLILLDISPEIEKLADEL-CGRG------HRCTAVVADVRDPASVAAAIKRA 76 (263)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHH-HHhC------CceEEEECCCCCHHHHHHHHHHH
Confidence 35678888874 566666665542 235899998887544333332 2222 367788899873210
Q ss_pred --CCCCcCEEEEcCcCcc
Q psy7826 193 --DEAPYDIIHVGGSIED 208 (213)
Q Consensus 193 --~~~~fD~Ii~~~~~~~ 208 (213)
..++.|.++.+++...
T Consensus 77 ~~~~~~id~vi~~ag~~~ 94 (263)
T PRK08226 77 KEKEGRIDILVNNAGVCR 94 (263)
T ss_pred HHHcCCCCEEEECCCcCC
Confidence 0135799999887643
No 436
>KOG2811|consensus
Probab=70.57 E-value=11 Score=32.40 Aligned_cols=47 Identities=11% Similarity=0.205 Sum_probs=36.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCCCEEEE---EeCChHHHHHHHHHHhh
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIG---IEHIPQLVQRATHNVIS 169 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~~~v~g---vD~s~~~l~~a~~~~~~ 169 (213)
++..++|+|||-|.++.+++..+ +...++- +|....++..-++...+
T Consensus 182 ~~~~~vEFGAGrg~Ls~~vs~~l-~~~~~~l~vlvdR~s~R~K~D~k~~~~ 231 (420)
T KOG2811|consen 182 PSSCFVEFGAGRGELSRWVSDCL-QIQNVYLFVLVDRKSSRLKFDRKLRNK 231 (420)
T ss_pred CcceEEEecCCchHHHHHHHHHh-ccccEEEEEeecccchhhhhhhhhhcc
Confidence 44689999999999999999987 4456666 88877777666655444
No 437
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=70.51 E-value=27 Score=28.41 Aligned_cols=79 Identities=18% Similarity=-0.019 Sum_probs=46.8
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC--------
Q psy7826 122 EGKKVLDIGSGN-GYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-------- 191 (213)
Q Consensus 122 ~~~~vLDiG~G~-G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~-------- 191 (213)
.++.+|=.|++. ++++..+++.+-. ..+|+..+.+....+.+++.....+ . . .++.+|+.+..
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~-----~-~-~~~~~Dv~d~~~v~~~~~~ 76 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELG-----S-D-YVYELDVSKPEHFKSLAES 76 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC-----C-c-eEEEecCCCHHHHHHHHHH
Confidence 357889999863 4566666655422 2588888887543333333333333 2 2 56778887321
Q ss_pred --CCCCCcCEEEEcCcCc
Q psy7826 192 --LDEAPYDIIHVGGSIE 207 (213)
Q Consensus 192 --~~~~~fD~Ii~~~~~~ 207 (213)
...+.+|+++.+++..
T Consensus 77 i~~~~g~iDilVnnAG~~ 94 (274)
T PRK08415 77 LKKDLGKIDFIVHSVAFA 94 (274)
T ss_pred HHHHcCCCCEEEECCccC
Confidence 1124689999998764
No 438
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=70.23 E-value=44 Score=26.50 Aligned_cols=79 Identities=11% Similarity=0.068 Sum_probs=49.4
Q ss_pred CCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhC-CCCCccCCCeEEEEcCCCCCCC--------
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISG-NPEFVKDGRIKFVLGDGRKGYL-------- 192 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~-gl~~~~~~~v~~~~~d~~~~~~-------- 192 (213)
++++|=.|+ +|..+..+++.+- ...+|+.+|.+....+...+.+... + ..++.++.+|+.+...
T Consensus 2 ~k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~i~~~~~~~ 75 (259)
T PRK12384 2 NQVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYG-----EGMAYGFGADATSEQSVLALSRGV 75 (259)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcC-----CceeEEEEccCCCHHHHHHHHHHH
Confidence 346888885 5666666665542 2358999999887776655544321 1 1368888999873210
Q ss_pred --CCCCcCEEEEcCcCc
Q psy7826 193 --DEAPYDIIHVGGSIE 207 (213)
Q Consensus 193 --~~~~fD~Ii~~~~~~ 207 (213)
..+..|.|+.+++..
T Consensus 76 ~~~~~~id~vv~~ag~~ 92 (259)
T PRK12384 76 DEIFGRVDLLVYNAGIA 92 (259)
T ss_pred HHHcCCCCEEEECCCcC
Confidence 113679999888654
No 439
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=70.04 E-value=18 Score=28.96 Aligned_cols=77 Identities=14% Similarity=0.053 Sum_probs=47.2
Q ss_pred CCCEEEEEcCC-ccHHHHHHHHHcCC-CCEEEEEeCCh--HHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC------
Q psy7826 122 EGKKVLDIGSG-NGYFTALLAWCVGK-TGKVIGIEHIP--QLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY------ 191 (213)
Q Consensus 122 ~~~~vLDiG~G-~G~~t~~la~~~~~-~~~v~gvD~s~--~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~------ 191 (213)
.++++|=.|+| +++++..+++.+-. ..+|+..+.+. +.++...+.+ + .++.++.+|+.+..
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~---~------~~~~~~~~Dv~~~~~i~~~~ 76 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL---P------EPAPVLELDVTNEEHLASLA 76 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc---C------CCCcEEeCCCCCHHHHHHHH
Confidence 35689999985 57777777765432 24888887653 3333332222 2 24667888887321
Q ss_pred ----CCCCCcCEEEEcCcCc
Q psy7826 192 ----LDEAPYDIIHVGGSIE 207 (213)
Q Consensus 192 ----~~~~~fD~Ii~~~~~~ 207 (213)
...+.+|+++.+++..
T Consensus 77 ~~~~~~~g~iD~li~nAG~~ 96 (256)
T PRK07889 77 DRVREHVDGLDGVVHSIGFA 96 (256)
T ss_pred HHHHHHcCCCcEEEEccccc
Confidence 1124689999998764
No 440
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=70.01 E-value=7.9 Score=29.66 Aligned_cols=51 Identities=25% Similarity=0.414 Sum_probs=41.1
Q ss_pred hCCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhC
Q psy7826 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISG 170 (213)
Q Consensus 119 ~~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~ 170 (213)
+.+.+.+.+|+|+..|.+.-..|+.. ..+++++++.-.+|-...+-+.+-+
T Consensus 76 hckhdttyidiganvgtfcgiaarhi-tqgkiiaiepltemensirmnvqln 126 (286)
T PF05575_consen 76 HCKHDTTYIDIGANVGTFCGIAARHI-TQGKIIAIEPLTEMENSIRMNVQLN 126 (286)
T ss_pred hccCCceEEEeccccccchhhhhhhc-ccCceEEEechhhhhhheeeeeeeC
Confidence 45667789999999999988888886 6789999998888877777665543
No 441
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=69.92 E-value=40 Score=27.40 Aligned_cols=78 Identities=15% Similarity=0.060 Sum_probs=52.6
Q ss_pred CCEEEEEcCCccHHHHHHHHHc-CCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCC----------C
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCV-GKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKG----------Y 191 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~----------~ 191 (213)
++.++=-|+++|.-- ..|+.+ ....+|+......+.++.....+.+ ..+..+..|+.+. .
T Consensus 6 ~kv~lITGASSGiG~-A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~--------~~~~~~~~DVtD~~~~~~~i~~~~ 76 (246)
T COG4221 6 GKVALITGASSGIGE-ATARALAEAGAKVVLAARREERLEALADEIGA--------GAALALALDVTDRAAVEAAIEALP 76 (246)
T ss_pred CcEEEEecCcchHHH-HHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc--------CceEEEeeccCCHHHHHHHHHHHH
Confidence 467788888877543 223322 2236999999999988887777543 2577888888742 1
Q ss_pred CCCCCcCEEEEcCcCccC
Q psy7826 192 LDEAPYDIIHVGGSIEDI 209 (213)
Q Consensus 192 ~~~~~fD~Ii~~~~~~~~ 209 (213)
..-+++|+++.|+.+.-.
T Consensus 77 ~~~g~iDiLvNNAGl~~g 94 (246)
T COG4221 77 EEFGRIDILVNNAGLALG 94 (246)
T ss_pred HhhCcccEEEecCCCCcC
Confidence 123569999999987654
No 442
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=69.80 E-value=33 Score=26.68 Aligned_cols=77 Identities=16% Similarity=0.159 Sum_probs=50.8
Q ss_pred CCEEEEEcCCccHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC---------
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL--------- 192 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~--------- 192 (213)
+++||=.|+ +|+.+..+++.+-. ..+|+.++.++...+.....+...+ .++.++.+|+.+...
T Consensus 5 ~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~ 77 (246)
T PRK05653 5 GKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAG------GEARVLVFDVSDEAAVRALIEAAV 77 (246)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcC------CceEEEEccCCCHHHHHHHHHHHH
Confidence 457887886 78887777766422 2479999998877766555554433 367888899874210
Q ss_pred -CCCCcCEEEEcCcC
Q psy7826 193 -DEAPYDIIHVGGSI 206 (213)
Q Consensus 193 -~~~~fD~Ii~~~~~ 206 (213)
...+.|.|+...+.
T Consensus 78 ~~~~~id~vi~~ag~ 92 (246)
T PRK05653 78 EAFGALDILVNNAGI 92 (246)
T ss_pred HHhCCCCEEEECCCc
Confidence 01356998888764
No 443
>PLN02427 UDP-apiose/xylose synthase
Probab=69.76 E-value=16 Score=31.33 Aligned_cols=79 Identities=15% Similarity=0.086 Sum_probs=48.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCC--CEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC---CCCC
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKT--GKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL---DEAP 196 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~---~~~~ 196 (213)
+.++||=.| |+|+.+.++++.+-.. .+|+++|.+............. .. ..+++++.+|+.+... ....
T Consensus 13 ~~~~VlVTG-gtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~-~~----~~~~~~~~~Dl~d~~~l~~~~~~ 86 (386)
T PLN02427 13 KPLTICMIG-AGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTV-PW----SGRIQFHRINIKHDSRLEGLIKM 86 (386)
T ss_pred cCcEEEEEC-CcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccc-cC----CCCeEEEEcCCCChHHHHHHhhc
Confidence 345788666 6899999998876433 4899999775543322111000 00 2368999999874210 0124
Q ss_pred cCEEEEcCcC
Q psy7826 197 YDIIHVGGSI 206 (213)
Q Consensus 197 fD~Ii~~~~~ 206 (213)
+|.||-.++.
T Consensus 87 ~d~ViHlAa~ 96 (386)
T PLN02427 87 ADLTINLAAI 96 (386)
T ss_pred CCEEEEcccc
Confidence 7998887764
No 444
>PRK06701 short chain dehydrogenase; Provisional
Probab=69.38 E-value=44 Score=27.37 Aligned_cols=79 Identities=13% Similarity=0.109 Sum_probs=46.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChH-HHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC-------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQ-LVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL------- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~-~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~------- 192 (213)
+++++|-.|+ +|+++..+++.+- ...+|+.++.++. ..+.....++..+ .++.++.+|+.+...
T Consensus 45 ~~k~iLItGa-sggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~ 117 (290)
T PRK06701 45 KGKVALITGG-DSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG------VKCLLIPGDVSDEAFCKDAVEE 117 (290)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC------CeEEEEEccCCCHHHHHHHHHH
Confidence 4567888886 4555555555442 2257888877642 3333334444333 367888999863110
Q ss_pred ---CCCCcCEEEEcCcCc
Q psy7826 193 ---DEAPYDIIHVGGSIE 207 (213)
Q Consensus 193 ---~~~~fD~Ii~~~~~~ 207 (213)
..+.+|+|+.++...
T Consensus 118 i~~~~~~iD~lI~~Ag~~ 135 (290)
T PRK06701 118 TVRELGRLDILVNNAAFQ 135 (290)
T ss_pred HHHHcCCCCEEEECCccc
Confidence 013579999887653
No 445
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=69.19 E-value=20 Score=27.99 Aligned_cols=78 Identities=21% Similarity=0.139 Sum_probs=42.8
Q ss_pred CCCEEEEEcCC-ccHHHHHHHHHcCCCCEEEEEeCC-------------------hHHHHHHHHHHhhCCCCCccCCCeE
Q psy7826 122 EGKKVLDIGSG-NGYFTALLAWCVGKTGKVIGIEHI-------------------PQLVQRATHNVISGNPEFVKDGRIK 181 (213)
Q Consensus 122 ~~~~vLDiG~G-~G~~t~~la~~~~~~~~v~gvD~s-------------------~~~l~~a~~~~~~~gl~~~~~~~v~ 181 (213)
...+|+=+||| .|...+....+.|- ++++.+|.+ ....+.+.+++++.+. .-+++
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv-~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np----~v~i~ 94 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGV-GTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNS----DIQVT 94 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCC-CeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCC----CCEEE
Confidence 35689999997 35544433334343 588888876 4556666777766542 12333
Q ss_pred EEEcCCCCC-C-CCCCCcCEEEEcC
Q psy7826 182 FVLGDGRKG-Y-LDEAPYDIIHVGG 204 (213)
Q Consensus 182 ~~~~d~~~~-~-~~~~~fD~Ii~~~ 204 (213)
.+....... . ..-..||+|+...
T Consensus 95 ~~~~~i~~~~~~~~~~~~D~Vi~~~ 119 (202)
T TIGR02356 95 ALKERVTAENLELLINNVDLVLDCT 119 (202)
T ss_pred EehhcCCHHHHHHHHhCCCEEEECC
Confidence 333333211 0 0123689988653
No 446
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=69.05 E-value=18 Score=26.47 Aligned_cols=77 Identities=21% Similarity=0.205 Sum_probs=48.4
Q ss_pred EEEEEcCCccHHHHHHHHHcCC--CCEEEEEeCC--hHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC---------
Q psy7826 125 KVLDIGSGNGYFTALLAWCVGK--TGKVIGIEHI--PQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY--------- 191 (213)
Q Consensus 125 ~vLDiG~G~G~~t~~la~~~~~--~~~v~gvD~s--~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~--------- 191 (213)
++|=.|+++| ++..+++.+-. ..+|+.+..+ ....+.....+...+ .++.+..+|+.+..
T Consensus 2 ~~lItGa~~g-iG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~------~~~~~~~~D~~~~~~~~~~~~~~ 74 (167)
T PF00106_consen 2 TVLITGASSG-IGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG------AKITFIECDLSDPESIRALIEEV 74 (167)
T ss_dssp EEEEETTTSH-HHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT------SEEEEEESETTSHHHHHHHHHHH
T ss_pred EEEEECCCCH-HHHHHHHHHHhcCceEEEEeeecccccccccccccccccc------ccccccccccccccccccccccc
Confidence 4677777654 44444443322 2377888888 666666666665443 57899999987320
Q ss_pred -CCCCCcCEEEEcCcCcc
Q psy7826 192 -LDEAPYDIIHVGGSIED 208 (213)
Q Consensus 192 -~~~~~fD~Ii~~~~~~~ 208 (213)
...+++|.++.++....
T Consensus 75 ~~~~~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 75 IKRFGPLDILINNAGIFS 92 (167)
T ss_dssp HHHHSSESEEEEECSCTT
T ss_pred cccccccccccccccccc
Confidence 11347999999987655
No 447
>PRK08265 short chain dehydrogenase; Provisional
Probab=68.99 E-value=35 Score=27.25 Aligned_cols=75 Identities=15% Similarity=0.097 Sum_probs=46.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC---------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY--------- 191 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~--------- 191 (213)
.++++|=.|++ |+.+..+++.+-. ..+|+.++.++..++...+.. + .++.++.+|+.+..
T Consensus 5 ~~k~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~------~~~~~~~~Dl~~~~~~~~~~~~~ 74 (261)
T PRK08265 5 AGKVAIVTGGA-TLIGAAVARALVAAGARVAIVDIDADNGAAVAASL---G------ERARFIATDITDDAAIERAVATV 74 (261)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C------CeeEEEEecCCCHHHHHHHHHHH
Confidence 35678888854 5555565555422 258999998876555444332 2 35788899987321
Q ss_pred -CCCCCcCEEEEcCcC
Q psy7826 192 -LDEAPYDIIHVGGSI 206 (213)
Q Consensus 192 -~~~~~fD~Ii~~~~~ 206 (213)
...+..|.++.+++.
T Consensus 75 ~~~~g~id~lv~~ag~ 90 (261)
T PRK08265 75 VARFGRVDILVNLACT 90 (261)
T ss_pred HHHhCCCCEEEECCCC
Confidence 011367999998765
No 448
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.90 E-value=51 Score=27.23 Aligned_cols=79 Identities=15% Similarity=0.133 Sum_probs=47.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCC-hHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC-----C--
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHI-PQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-----L-- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s-~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~-----~-- 192 (213)
.++++|=.|++.| ++..+++.+- ...+|+.+|.+ ....+...+.+...+ .++.++.+|+.+.. .
T Consensus 11 ~~k~~lVTGas~g-IG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g------~~~~~~~~Dv~d~~~~~~~~~~ 83 (306)
T PRK07792 11 SGKVAVVTGAAAG-LGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAG------AKAVAVAGDISQRATADELVAT 83 (306)
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcC------CeEEEEeCCCCCHHHHHHHHHH
Confidence 4668888887654 4444444332 22578888864 344444444444433 36788899987310 0
Q ss_pred --CCCCcCEEEEcCcCc
Q psy7826 193 --DEAPYDIIHVGGSIE 207 (213)
Q Consensus 193 --~~~~fD~Ii~~~~~~ 207 (213)
..+..|+++.+++..
T Consensus 84 ~~~~g~iD~li~nAG~~ 100 (306)
T PRK07792 84 AVGLGGLDIVVNNAGIT 100 (306)
T ss_pred HHHhCCCCEEEECCCCC
Confidence 024689999988754
No 449
>PRK05717 oxidoreductase; Validated
Probab=68.84 E-value=35 Score=27.07 Aligned_cols=77 Identities=13% Similarity=0.024 Sum_probs=48.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC--------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-------- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~-------- 192 (213)
.++++|=.|++ |+.+..+++.+- ...+|+.+|.++...+...+. .+ .++.++.+|+.+...
T Consensus 9 ~~k~vlItG~s-g~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~---~~------~~~~~~~~Dl~~~~~~~~~~~~~ 78 (255)
T PRK05717 9 NGRVALVTGAA-RGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKA---LG------ENAWFIAMDVADEAQVAAGVAEV 78 (255)
T ss_pred CCCEEEEeCCc-chHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHH---cC------CceEEEEccCCCHHHHHHHHHHH
Confidence 45678877764 666666666553 225899999887654433222 22 357888999874210
Q ss_pred --CCCCcCEEEEcCcCcc
Q psy7826 193 --DEAPYDIIHVGGSIED 208 (213)
Q Consensus 193 --~~~~fD~Ii~~~~~~~ 208 (213)
..+++|.++.+++...
T Consensus 79 ~~~~g~id~li~~ag~~~ 96 (255)
T PRK05717 79 LGQFGRLDALVCNAAIAD 96 (255)
T ss_pred HHHhCCCCEEEECCCccc
Confidence 1135899999987653
No 450
>PLN02740 Alcohol dehydrogenase-like
Probab=68.60 E-value=14 Score=31.65 Aligned_cols=46 Identities=26% Similarity=0.403 Sum_probs=34.3
Q ss_pred hCCCCCEEEEEcCCc-cHHHHHHHHHcCCCCEEEEEeCChHHHHHHHH
Q psy7826 119 ELTEGKKVLDIGSGN-GYFTALLAWCVGKTGKVIGIEHIPQLVQRATH 165 (213)
Q Consensus 119 ~~~~~~~vLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 165 (213)
.++++++||=.|+|+ |..+..+|+..|. .+|+++|.+++.++.+++
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~-~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGA-SKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-CcEEEEcCChHHHHHHHH
Confidence 467889999998763 4455667777641 269999999998888854
No 451
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=68.56 E-value=17 Score=30.73 Aligned_cols=46 Identities=24% Similarity=0.286 Sum_probs=34.2
Q ss_pred hCCCCCEEEEEcCCc-cHHHHHHHHHcCCCCEEEEEeCChHHHHHHHH
Q psy7826 119 ELTEGKKVLDIGSGN-GYFTALLAWCVGKTGKVIGIEHIPQLVQRATH 165 (213)
Q Consensus 119 ~~~~~~~vLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 165 (213)
.+.++++||=.|+|+ |..+..+|+..|. .+|+++|.++...+.+++
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~-~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGA-SKIIAVDIDDRKLEWARE 219 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH
Confidence 457889999988753 5566777887642 259999999998888754
No 452
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=68.55 E-value=25 Score=30.43 Aligned_cols=78 Identities=18% Similarity=0.216 Sum_probs=50.7
Q ss_pred CCccHHHHHHHHH-cC-CCCEEEEE---eCChHHHHHHHHHHhhCCC-CCccCCCeEEEEcCCCCCCCC---------CC
Q psy7826 131 SGNGYFTALLAWC-VG-KTGKVIGI---EHIPQLVQRATHNVISGNP-EFVKDGRIKFVLGDGRKGYLD---------EA 195 (213)
Q Consensus 131 ~G~G~~t~~la~~-~~-~~~~v~gv---D~s~~~l~~a~~~~~~~gl-~~~~~~~v~~~~~d~~~~~~~---------~~ 195 (213)
-+||++++++... ++ .+++|++. +-.+.+.++.++++..++. .+...++|+.+.+|..++... .+
T Consensus 7 GATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~~~~La~ 86 (382)
T COG3320 7 GATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERTWQELAE 86 (382)
T ss_pred cCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHHHHHHhh
Confidence 3699999776543 32 23688886 4556677787887763221 111146899999999843221 23
Q ss_pred CcCEEEEcCcCcc
Q psy7826 196 PYDIIHVGGSIED 208 (213)
Q Consensus 196 ~fD~Ii~~~~~~~ 208 (213)
..|.|+=+++..|
T Consensus 87 ~vD~I~H~gA~Vn 99 (382)
T COG3320 87 NVDLIIHNAALVN 99 (382)
T ss_pred hcceEEecchhhc
Confidence 5899999988665
No 453
>PRK07806 short chain dehydrogenase; Provisional
Probab=68.48 E-value=43 Score=26.26 Aligned_cols=78 Identities=18% Similarity=0.071 Sum_probs=45.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCCh-HHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC-------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIP-QLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL------- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~-~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~------- 192 (213)
.++++|-.|++ |+.+..+++.+- ...+|++++.+. ...+.....++..+ .++.++.+|+.+...
T Consensus 5 ~~k~vlItGas-ggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~------~~~~~~~~D~~~~~~~~~~~~~ 77 (248)
T PRK07806 5 PGKTALVTGSS-RGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG------GRASAVGADLTDEESVAALMDT 77 (248)
T ss_pred CCcEEEEECCC-CcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC------CceEEEEcCCCCHHHHHHHHHH
Confidence 35678888864 556666655442 224788887654 33444444443322 357888899873210
Q ss_pred ---CCCCcCEEEEcCcC
Q psy7826 193 ---DEAPYDIIHVGGSI 206 (213)
Q Consensus 193 ---~~~~fD~Ii~~~~~ 206 (213)
..+..|.|+.+++.
T Consensus 78 ~~~~~~~~d~vi~~ag~ 94 (248)
T PRK07806 78 AREEFGGLDALVLNASG 94 (248)
T ss_pred HHHhCCCCcEEEECCCC
Confidence 01357998888754
No 454
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.44 E-value=24 Score=28.19 Aligned_cols=77 Identities=17% Similarity=0.016 Sum_probs=46.5
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC--------
Q psy7826 122 EGKKVLDIGSGN-GYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-------- 191 (213)
Q Consensus 122 ~~~~vLDiG~G~-G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~-------- 191 (213)
.++++|-.|+++ ++.+..+++.+- ...+|+.++.+....+. +++.. ..++.++.+|+.+..
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~----~~~~~-----~~~~~~~~~Dl~~~~~v~~~~~~ 76 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKS----LQKLV-----DEEDLLVECDVASDESIERAFAT 76 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHH----HHhhc-----cCceeEEeCCCCCHHHHHHHHHH
Confidence 467899999874 566666666552 22588888776432222 22221 235778889987321
Q ss_pred --CCCCCcCEEEEcCcCc
Q psy7826 192 --LDEAPYDIIHVGGSIE 207 (213)
Q Consensus 192 --~~~~~fD~Ii~~~~~~ 207 (213)
...+.+|+++.++...
T Consensus 77 ~~~~~g~iD~lv~nAg~~ 94 (252)
T PRK06079 77 IKERVGKIDGIVHAIAYA 94 (252)
T ss_pred HHHHhCCCCEEEEccccc
Confidence 0124689999998764
No 455
>PRK08303 short chain dehydrogenase; Provisional
Probab=68.32 E-value=35 Score=28.37 Aligned_cols=76 Identities=20% Similarity=0.124 Sum_probs=45.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCCh----------HHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCC
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIP----------QLVQRATHNVISGNPEFVKDGRIKFVLGDGRKG 190 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~----------~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~ 190 (213)
.++++|-.|++.| ++..+++.+- ...+|+.++.+. +.++.+.+.+...+ .++.++.+|+.+.
T Consensus 7 ~~k~~lITGgs~G-IG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~Dv~~~ 79 (305)
T PRK08303 7 RGKVALVAGATRG-AGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAG------GRGIAVQVDHLVP 79 (305)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcC------CceEEEEcCCCCH
Confidence 4678899997665 4455554442 225888888762 34444444444433 3567888998732
Q ss_pred C----------CCCCCcCEEEEcC
Q psy7826 191 Y----------LDEAPYDIIHVGG 204 (213)
Q Consensus 191 ~----------~~~~~fD~Ii~~~ 204 (213)
. ...+..|+++.++
T Consensus 80 ~~v~~~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 80 EQVRALVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHHHHHHcCCccEEEECC
Confidence 1 0124689999987
No 456
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.13 E-value=28 Score=28.21 Aligned_cols=80 Identities=15% Similarity=-0.040 Sum_probs=46.7
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC--------
Q psy7826 122 EGKKVLDIGSGN-GYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-------- 191 (213)
Q Consensus 122 ~~~~vLDiG~G~-G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~-------- 191 (213)
.++.+|-.|++. ++.+..+++.+-. ..+|+.++.+....+..++.....+ ...++.+|+.+..
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g-------~~~~~~~Dv~d~~~v~~~~~~ 78 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLG-------SDFVLPCDVEDIASVDAVFEA 78 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcC-------CceEEeCCCCCHHHHHHHHHH
Confidence 456899999876 2555555554422 2578888776544333333333323 2246788887321
Q ss_pred --CCCCCcCEEEEcCcCcc
Q psy7826 192 --LDEAPYDIIHVGGSIED 208 (213)
Q Consensus 192 --~~~~~fD~Ii~~~~~~~ 208 (213)
...+..|+++.+++...
T Consensus 79 ~~~~~g~iD~lVnnAG~~~ 97 (271)
T PRK06505 79 LEKKWGKLDFVVHAIGFSD 97 (271)
T ss_pred HHHHhCCCCEEEECCccCC
Confidence 11247899999987643
No 457
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=68.09 E-value=12 Score=34.47 Aligned_cols=65 Identities=15% Similarity=0.123 Sum_probs=41.6
Q ss_pred EEEEEcCCccHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC----CCCCCcCE
Q psy7826 125 KVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY----LDEAPYDI 199 (213)
Q Consensus 125 ~vLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~----~~~~~fD~ 199 (213)
+|+= ||.|..+..+++.+.. ..+++.+|.+++.++.+++. ...++.||+.+.. ..-...|.
T Consensus 402 ~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~------------g~~v~~GDat~~~~L~~agi~~A~~ 467 (601)
T PRK03659 402 QVII--VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY------------GYKVYYGDATQLELLRAAGAEKAEA 467 (601)
T ss_pred CEEE--ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC------------CCeEEEeeCCCHHHHHhcCCccCCE
Confidence 4555 4556666677665532 24899999999999887642 2468889987421 11235677
Q ss_pred EEEc
Q psy7826 200 IHVG 203 (213)
Q Consensus 200 Ii~~ 203 (213)
+++.
T Consensus 468 vv~~ 471 (601)
T PRK03659 468 IVIT 471 (601)
T ss_pred EEEE
Confidence 6654
No 458
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=68.03 E-value=19 Score=30.35 Aligned_cols=85 Identities=21% Similarity=0.157 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCC-CEEEEEeCChHHHHHHHHHH-hhCCCCCccCCCeEEEEcCCCCCC--C-CCCC
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKT-GKVIGIEHIPQLVQRATHNV-ISGNPEFVKDGRIKFVLGDGRKGY--L-DEAP 196 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~-~~~gl~~~~~~~v~~~~~d~~~~~--~-~~~~ 196 (213)
..++||=.| |+|+.+.++++.+-.. .+|+++|............. ...+. ....+++++.+|+.+.. . -...
T Consensus 14 ~~~~vlVtG-atGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Di~d~~~l~~~~~~ 90 (348)
T PRK15181 14 APKRWLITG-VAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSE--EQWSRFIFIQGDIRKFTDCQKACKN 90 (348)
T ss_pred cCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhcccc--ccCCceEEEEccCCCHHHHHHHhhC
Confidence 346888877 5899999988876332 48999997543221111111 11110 00236889999997421 0 0124
Q ss_pred cCEEEEcCcCccC
Q psy7826 197 YDIIHVGGSIEDI 209 (213)
Q Consensus 197 fD~Ii~~~~~~~~ 209 (213)
+|.|+-.++....
T Consensus 91 ~d~ViHlAa~~~~ 103 (348)
T PRK15181 91 VDYVLHQAALGSV 103 (348)
T ss_pred CCEEEECccccCc
Confidence 7999988876543
No 459
>PRK06138 short chain dehydrogenase; Provisional
Probab=67.84 E-value=46 Score=26.11 Aligned_cols=78 Identities=14% Similarity=0.160 Sum_probs=49.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC--------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-------- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~-------- 192 (213)
.++++|=.||. |..+..+++.+-. ..+|+.++.+....+....... . ..++.++.+|+.+...
T Consensus 4 ~~k~~lItG~s-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~------~~~~~~~~~D~~~~~~~~~~~~~i 75 (252)
T PRK06138 4 AGRVAIVTGAG-SGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-A------GGRAFARQGDVGSAEAVEALVDFV 75 (252)
T ss_pred CCcEEEEeCCC-chHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-c------CCeEEEEEcCCCCHHHHHHHHHHH
Confidence 35678888874 6666666654322 2489999888776665555443 2 2468899999874211
Q ss_pred --CCCCcCEEEEcCcCc
Q psy7826 193 --DEAPYDIIHVGGSIE 207 (213)
Q Consensus 193 --~~~~fD~Ii~~~~~~ 207 (213)
..+++|.|+.+.+..
T Consensus 76 ~~~~~~id~vi~~ag~~ 92 (252)
T PRK06138 76 AARWGRLDVLVNNAGFG 92 (252)
T ss_pred HHHcCCCCEEEECCCCC
Confidence 013689999888754
No 460
>PRK06114 short chain dehydrogenase; Provisional
Probab=67.60 E-value=59 Score=25.77 Aligned_cols=80 Identities=9% Similarity=0.084 Sum_probs=49.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCC-CCEEEEEeCCh-HHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC--------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIP-QLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-------- 191 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~-~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~-------- 191 (213)
.++++|=.|+ +|+++..+++.+-. ..+|+.++.+. ..++...+.+...+ .++.++.+|+.+..
T Consensus 7 ~~k~~lVtG~-s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~------~~~~~~~~D~~~~~~i~~~~~~ 79 (254)
T PRK06114 7 DGQVAFVTGA-GSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAG------RRAIQIAADVTSKADLRAAVAR 79 (254)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC------CceEEEEcCCCCHHHHHHHHHH
Confidence 4567887774 55666666665432 24888888764 33444445554433 36778888986321
Q ss_pred --CCCCCcCEEEEcCcCcc
Q psy7826 192 --LDEAPYDIIHVGGSIED 208 (213)
Q Consensus 192 --~~~~~fD~Ii~~~~~~~ 208 (213)
...++.|.++.+++...
T Consensus 80 ~~~~~g~id~li~~ag~~~ 98 (254)
T PRK06114 80 TEAELGALTLAVNAAGIAN 98 (254)
T ss_pred HHHHcCCCCEEEECCCCCC
Confidence 01245799999987654
No 461
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=67.35 E-value=17 Score=30.90 Aligned_cols=46 Identities=24% Similarity=0.302 Sum_probs=34.8
Q ss_pred hCCCCCEEEEEcCCc-cHHHHHHHHHcCCCCEEEEEeCChHHHHHHHH
Q psy7826 119 ELTEGKKVLDIGSGN-GYFTALLAWCVGKTGKVIGIEHIPQLVQRATH 165 (213)
Q Consensus 119 ~~~~~~~vLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 165 (213)
.++++++||=.|+|+ |..+..+|+.+|. .+|+++|.+++.++.+++
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~-~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKA-SRIIAIDINPAKFELAKK 228 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH
Confidence 467889999998763 5566777887642 279999999998888754
No 462
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=67.20 E-value=12 Score=29.99 Aligned_cols=52 Identities=15% Similarity=0.089 Sum_probs=34.6
Q ss_pred HHHHHHHhhhCC-CCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHH
Q psy7826 110 AMVLDDLSEELT-EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNV 167 (213)
Q Consensus 110 ~~~~~~l~~~~~-~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~ 167 (213)
..+.+.+ +. +..+++|.=||+|..+..+... ..+++.-|+++..+...+..+
T Consensus 10 ~~I~~~i---p~~~~~~~vepF~G~g~V~~~~~~~---~~~vi~ND~~~~l~~~~~~~l 62 (260)
T PF02086_consen 10 KWIIELI---PKNKHKTYVEPFAGGGSVFLNLKQP---GKRVIINDINPDLINFWKAVL 62 (260)
T ss_dssp HHHHHHS----S-S-SEEEETT-TTSHHHHCC------SSEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHHc---CCCCCCEEEEEecchhHHHHHhccc---ccceeeeechHHHHHHHHHHH
Confidence 3445544 23 6789999999999999888763 268999999998887776443
No 463
>PRK06180 short chain dehydrogenase; Provisional
Probab=67.17 E-value=45 Score=26.91 Aligned_cols=76 Identities=17% Similarity=0.000 Sum_probs=47.3
Q ss_pred CCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC---------
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL--------- 192 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~--------- 192 (213)
++++|=.|++ |+.+..+++.+- ...+|++++.++..++..... . ..++.++.+|+.+...
T Consensus 4 ~~~vlVtGas-ggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~---~------~~~~~~~~~D~~d~~~~~~~~~~~~ 73 (277)
T PRK06180 4 MKTWLITGVS-SGFGRALAQAALAAGHRVVGTVRSEAARADFEAL---H------PDRALARLLDVTDFDAIDAVVADAE 73 (277)
T ss_pred CCEEEEecCC-ChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhh---c------CCCeeEEEccCCCHHHHHHHHHHHH
Confidence 4578888875 455556655442 225899999988766543332 1 2367788888863210
Q ss_pred -CCCCcCEEEEcCcCcc
Q psy7826 193 -DEAPYDIIHVGGSIED 208 (213)
Q Consensus 193 -~~~~fD~Ii~~~~~~~ 208 (213)
..+.+|.|+.+++...
T Consensus 74 ~~~~~~d~vv~~ag~~~ 90 (277)
T PRK06180 74 ATFGPIDVLVNNAGYGH 90 (277)
T ss_pred HHhCCCCEEEECCCccC
Confidence 0135899999987654
No 464
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.17 E-value=31 Score=28.02 Aligned_cols=79 Identities=13% Similarity=-0.055 Sum_probs=46.4
Q ss_pred CCCEEEEEcCC-ccHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCC---------
Q psy7826 122 EGKKVLDIGSG-NGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKG--------- 190 (213)
Q Consensus 122 ~~~~vLDiG~G-~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~--------- 190 (213)
.++++|=.|++ +++++..+++.+-. ..+|+.+..+....+.+++..+..+ ...++.+|+.+.
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~-------~~~~~~~Dl~~~~~v~~~~~~ 81 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELG-------AFVAGHCDVTDEASIDAVFET 81 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcC-------CceEEecCCCCHHHHHHHHHH
Confidence 45688999986 46677777666532 2477766655333333333333323 345678888631
Q ss_pred -CCCCCCcCEEEEcCcCc
Q psy7826 191 -YLDEAPYDIIHVGGSIE 207 (213)
Q Consensus 191 -~~~~~~fD~Ii~~~~~~ 207 (213)
....+..|+++.+++..
T Consensus 82 ~~~~~g~iD~lv~nAG~~ 99 (272)
T PRK08159 82 LEKKWGKLDFVVHAIGFS 99 (272)
T ss_pred HHHhcCCCcEEEECCccc
Confidence 01124689999998764
No 465
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=67.14 E-value=55 Score=26.08 Aligned_cols=79 Identities=10% Similarity=-0.009 Sum_probs=45.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEe-CChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC--------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIE-HIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-------- 191 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD-~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~-------- 191 (213)
.++++|=.|++.| ++..+++.+- ...+|+.+. .+++.++...+.++... ..++.++.+|+.+..
T Consensus 7 ~~k~vlItGas~g-IG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~ 80 (260)
T PRK08416 7 KGKTLVISGGTRG-IGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKY-----GIKAKAYPLNILEPETYKELFKK 80 (260)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhc-----CCceEEEEcCCCCHHHHHHHHHH
Confidence 4568888886654 4444444332 224777664 45555555444443221 236788999987421
Q ss_pred --CCCCCcCEEEEcCcC
Q psy7826 192 --LDEAPYDIIHVGGSI 206 (213)
Q Consensus 192 --~~~~~fD~Ii~~~~~ 206 (213)
...+.+|+++.++..
T Consensus 81 ~~~~~g~id~lv~nAg~ 97 (260)
T PRK08416 81 IDEDFDRVDFFISNAII 97 (260)
T ss_pred HHHhcCCccEEEECccc
Confidence 012468999998864
No 466
>PLN02253 xanthoxin dehydrogenase
Probab=66.92 E-value=32 Score=27.74 Aligned_cols=78 Identities=15% Similarity=0.064 Sum_probs=49.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC--------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-------- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~-------- 192 (213)
.++++|=.|+ +|+++..+++.+- ...+|+.++.++...+...+.+.. ..++.++.+|+.+...
T Consensus 17 ~~k~~lItGa-s~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~d~~~~~~~~~~~ 88 (280)
T PLN02253 17 LGKVALVTGG-ATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGG-------EPNVCFFHCDVTVEDDVSRAVDFT 88 (280)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC-------CCceEEEEeecCCHHHHHHHHHHH
Confidence 3567888885 5666666666542 225899999887665544443321 2367888999874210
Q ss_pred --CCCCcCEEEEcCcCc
Q psy7826 193 --DEAPYDIIHVGGSIE 207 (213)
Q Consensus 193 --~~~~fD~Ii~~~~~~ 207 (213)
..+..|.++.+++..
T Consensus 89 ~~~~g~id~li~~Ag~~ 105 (280)
T PLN02253 89 VDKFGTLDIMVNNAGLT 105 (280)
T ss_pred HHHhCCCCEEEECCCcC
Confidence 013589999988754
No 467
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=66.81 E-value=18 Score=30.47 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=32.5
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHcCCCCEEEEEeC---ChHHHHHHHH
Q psy7826 120 LTEGKKVLDIGSGN-GYFTALLAWCVGKTGKVIGIEH---IPQLVQRATH 165 (213)
Q Consensus 120 ~~~~~~vLDiG~G~-G~~t~~la~~~~~~~~v~gvD~---s~~~l~~a~~ 165 (213)
..++.+||=.|+|. |..+..+++..| .+|++++. ++..++.+++
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~~ 217 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVEE 217 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHH
Confidence 35788999999874 667777888864 48999986 6777776653
No 468
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=66.49 E-value=21 Score=28.40 Aligned_cols=68 Identities=18% Similarity=0.191 Sum_probs=42.4
Q ss_pred EEEEEcCCccHHHHHHHHHcCCC-CEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC----CCCCCcCE
Q psy7826 125 KVLDIGSGNGYFTALLAWCVGKT-GKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY----LDEAPYDI 199 (213)
Q Consensus 125 ~vLDiG~G~G~~t~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~----~~~~~fD~ 199 (213)
+++=+|| |-++..+|+.+-.. ..|+.+|.+++.++..... ......+++|..+.. .....+|.
T Consensus 2 ~iiIiG~--G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~----------~~~~~~v~gd~t~~~~L~~agi~~aD~ 69 (225)
T COG0569 2 KIIIIGA--GRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD----------ELDTHVVIGDATDEDVLEEAGIDDADA 69 (225)
T ss_pred EEEEECC--cHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh----------hcceEEEEecCCCHHHHHhcCCCcCCE
Confidence 4555666 55555566555333 3899999999887774432 125678889987321 11235888
Q ss_pred EEEcC
Q psy7826 200 IHVGG 204 (213)
Q Consensus 200 Ii~~~ 204 (213)
+++.-
T Consensus 70 vva~t 74 (225)
T COG0569 70 VVAAT 74 (225)
T ss_pred EEEee
Confidence 87653
No 469
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=66.24 E-value=44 Score=26.52 Aligned_cols=77 Identities=13% Similarity=-0.020 Sum_probs=46.4
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHcCC-CCEEEEEeCC------------hHHHHHHHHHHhhCCCCCccCCCeEEEEcCCC
Q psy7826 123 GKKVLDIGSGN-GYFTALLAWCVGK-TGKVIGIEHI------------PQLVQRATHNVISGNPEFVKDGRIKFVLGDGR 188 (213)
Q Consensus 123 ~~~vLDiG~G~-G~~t~~la~~~~~-~~~v~gvD~s------------~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~ 188 (213)
++++|=.|++. |+++..+++.+.. ..+|+.++.+ +.... ..+.+...+ .++.++.+|+.
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~D~~ 77 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIESYG------VRCEHMEIDLS 77 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHH-HHHHHHhcC------CeEEEEECCCC
Confidence 46799999864 5666666665522 2478888765 22222 233333333 36889999987
Q ss_pred CCCC----------CCCCcCEEEEcCcC
Q psy7826 189 KGYL----------DEAPYDIIHVGGSI 206 (213)
Q Consensus 189 ~~~~----------~~~~fD~Ii~~~~~ 206 (213)
+... ..+.+|.|+.+++.
T Consensus 78 ~~~~~~~~~~~~~~~~g~id~vi~~ag~ 105 (256)
T PRK12748 78 QPYAPNRVFYAVSERLGDPSILINNAAY 105 (256)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCc
Confidence 4210 11468999988765
No 470
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=66.09 E-value=55 Score=28.66 Aligned_cols=83 Identities=20% Similarity=0.131 Sum_probs=49.9
Q ss_pred CCCCEEEEEcCCccHHHHH-HHHHcCCCCEEEEEeCChHHH------------HHHHHHHhhCCCCCccCCCeEEEEcCC
Q psy7826 121 TEGKKVLDIGSGNGYFTAL-LAWCVGKTGKVIGIEHIPQLV------------QRATHNVISGNPEFVKDGRIKFVLGDG 187 (213)
Q Consensus 121 ~~~~~vLDiG~G~G~~t~~-la~~~~~~~~v~gvD~s~~~l------------~~a~~~~~~~gl~~~~~~~v~~~~~d~ 187 (213)
..++++|=.|+++|.-... +++.++....+++++...+.. +...+.++..| ..+..+.+|+
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G------~~a~~i~~DV 112 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAFGAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAG------LYAKSINGDA 112 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHHHcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcC------CceEEEEcCC
Confidence 3457899999998875542 666653335788887543221 12333444444 2456788998
Q ss_pred CCCC----------CCCCCcCEEEEcCcCccC
Q psy7826 188 RKGY----------LDEAPYDIIHVGGSIEDI 209 (213)
Q Consensus 188 ~~~~----------~~~~~fD~Ii~~~~~~~~ 209 (213)
.... ..-+..|+++.+.+...-
T Consensus 113 ss~E~v~~lie~I~e~~G~IDiLVnSaA~~~r 144 (398)
T PRK13656 113 FSDEIKQKVIELIKQDLGQVDLVVYSLASPRR 144 (398)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCccCCC
Confidence 7310 112568999998886643
No 471
>PRK06482 short chain dehydrogenase; Provisional
Probab=66.07 E-value=64 Score=25.86 Aligned_cols=75 Identities=11% Similarity=0.020 Sum_probs=48.1
Q ss_pred CEEEEEcCCccHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC----------C
Q psy7826 124 KKVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY----------L 192 (213)
Q Consensus 124 ~~vLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~----------~ 192 (213)
+++|=.|+ +|+++..+++.+-. ..+|+.++.++..++..++.. ..++.++.+|+.+.. .
T Consensus 3 k~vlVtGa-sg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~~~~~~~~~~~ 72 (276)
T PRK06482 3 KTWFITGA-SSGFGRGMTERLLARGDRVAATVRRPDALDDLKARY---------GDRLWVLQLDVTDSAAVRAVVDRAFA 72 (276)
T ss_pred CEEEEecC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc---------cCceEEEEccCCCHHHHHHHHHHHHH
Confidence 35776666 67777777765532 258999998877665544332 236788899987421 0
Q ss_pred CCCCcCEEEEcCcCcc
Q psy7826 193 DEAPYDIIHVGGSIED 208 (213)
Q Consensus 193 ~~~~fD~Ii~~~~~~~ 208 (213)
..+..|.|+.+++...
T Consensus 73 ~~~~id~vi~~ag~~~ 88 (276)
T PRK06482 73 ALGRIDVVVSNAGYGL 88 (276)
T ss_pred HcCCCCEEEECCCCCC
Confidence 1235799999887544
No 472
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=65.85 E-value=17 Score=31.47 Aligned_cols=79 Identities=15% Similarity=0.185 Sum_probs=48.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHH--HHHHHhhCCCCCccCCCeEEEEcCCCCCC-----
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQR--ATHNVISGNPEFVKDGRIKFVLGDGRKGY----- 191 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~--a~~~~~~~gl~~~~~~~v~~~~~d~~~~~----- 191 (213)
...+.+||=.| |+|+.+.++++.+- ...+|++++.+...... ........ ..+++++.+|+.+..
T Consensus 57 ~~~~~kVLVtG-atG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~------~~~v~~v~~Dl~d~~~l~~~ 129 (390)
T PLN02657 57 EPKDVTVLVVG-ATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKE------LPGAEVVFGDVTDADSLRKV 129 (390)
T ss_pred CCCCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhh------cCCceEEEeeCCCHHHHHHH
Confidence 34567899888 68998888877652 22489999877644321 01111111 246889999987421
Q ss_pred CCC--CCcCEEEEcCc
Q psy7826 192 LDE--APYDIIHVGGS 205 (213)
Q Consensus 192 ~~~--~~fD~Ii~~~~ 205 (213)
... ..+|+|+.+.+
T Consensus 130 ~~~~~~~~D~Vi~~aa 145 (390)
T PLN02657 130 LFSEGDPVDVVVSCLA 145 (390)
T ss_pred HHHhCCCCcEEEECCc
Confidence 111 15899997654
No 473
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=65.43 E-value=53 Score=26.16 Aligned_cols=75 Identities=16% Similarity=0.078 Sum_probs=46.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC-----C---
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-----L--- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~-----~--- 192 (213)
+++++|=.|++ |+++..+++.+- ...+|+.++.+...++..... .+ .++.++.+|+.+.. .
T Consensus 4 ~~k~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~---~~------~~~~~~~~D~~~~~~~~~~~~~~ 73 (262)
T TIGR03325 4 KGEVVLVTGGA-SGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAA---HG------DAVVGVEGDVRSLDDHKEAVARC 73 (262)
T ss_pred CCcEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh---cC------CceEEEEeccCCHHHHHHHHHHH
Confidence 35678888875 555555555442 235899999887665544322 12 35778888886311 0
Q ss_pred --CCCCcCEEEEcCcC
Q psy7826 193 --DEAPYDIIHVGGSI 206 (213)
Q Consensus 193 --~~~~fD~Ii~~~~~ 206 (213)
..+..|.++.+++.
T Consensus 74 ~~~~g~id~li~~Ag~ 89 (262)
T TIGR03325 74 VAAFGKIDCLIPNAGI 89 (262)
T ss_pred HHHhCCCCEEEECCCC
Confidence 11357999998865
No 474
>PRK07825 short chain dehydrogenase; Provisional
Probab=65.41 E-value=53 Score=26.29 Aligned_cols=75 Identities=16% Similarity=0.051 Sum_probs=46.9
Q ss_pred CCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC---------
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL--------- 192 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~--------- 192 (213)
++++|=.|++ |+++..+++.+. ...+|+.++.+++.++...+.+ .++.++.+|+.+...
T Consensus 5 ~~~ilVtGas-ggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~~~~~~~~~ 73 (273)
T PRK07825 5 GKVVAITGGA-RGIGLATARALAALGARVAIGDLDEALAKETAAEL----------GLVVGGPLDVTDPASFAAFLDAVE 73 (273)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----------ccceEEEccCCCHHHHHHHHHHHH
Confidence 4578888875 555555555432 2357888898887766544432 246778888873210
Q ss_pred -CCCCcCEEEEcCcCcc
Q psy7826 193 -DEAPYDIIHVGGSIED 208 (213)
Q Consensus 193 -~~~~fD~Ii~~~~~~~ 208 (213)
..+..|+++.+++...
T Consensus 74 ~~~~~id~li~~ag~~~ 90 (273)
T PRK07825 74 ADLGPIDVLVNNAGVMP 90 (273)
T ss_pred HHcCCCCEEEECCCcCC
Confidence 1145799999887543
No 475
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=65.37 E-value=39 Score=27.09 Aligned_cols=79 Identities=15% Similarity=-0.017 Sum_probs=43.8
Q ss_pred CCCEEEEEcCCcc-HHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC--------
Q psy7826 122 EGKKVLDIGSGNG-YFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-------- 191 (213)
Q Consensus 122 ~~~~vLDiG~G~G-~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~-------- 191 (213)
.++.+|=.|++.| +.+..+++.+- ...+|+..+.++...+.+++.....+ ...++.+|+.+..
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g-------~~~~~~~Dv~~~~~v~~~~~~ 79 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIG-------CNFVSELDVTNPKSISNLFDD 79 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcC-------CceEEEccCCCHHHHHHHHHH
Confidence 3567888898764 45555554432 12578877776432233333322222 2235678887321
Q ss_pred --CCCCCcCEEEEcCcCc
Q psy7826 192 --LDEAPYDIIHVGGSIE 207 (213)
Q Consensus 192 --~~~~~fD~Ii~~~~~~ 207 (213)
...+.+|+++.++...
T Consensus 80 ~~~~~g~iDilVnnag~~ 97 (260)
T PRK06603 80 IKEKWGSFDFLLHGMAFA 97 (260)
T ss_pred HHHHcCCccEEEEccccC
Confidence 1124689999988754
No 476
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=65.34 E-value=14 Score=34.31 Aligned_cols=66 Identities=17% Similarity=0.230 Sum_probs=42.0
Q ss_pred CEEEEEcCCccHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC----CCCCCcC
Q psy7826 124 KKVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY----LDEAPYD 198 (213)
Q Consensus 124 ~~vLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~----~~~~~fD 198 (213)
.+|+=+|+| ..+..+++.+.. ..+++.+|.+++.++.+++. ...++.||..+.. ..-+..|
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~------------g~~v~~GDat~~~~L~~agi~~A~ 466 (621)
T PRK03562 401 PRVIIAGFG--RFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF------------GMKVFYGDATRMDLLESAGAAKAE 466 (621)
T ss_pred CcEEEEecC--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc------------CCeEEEEeCCCHHHHHhcCCCcCC
Confidence 467776665 444455554322 24799999999999888652 2467889987421 1223567
Q ss_pred EEEEc
Q psy7826 199 IIHVG 203 (213)
Q Consensus 199 ~Ii~~ 203 (213)
.+++.
T Consensus 467 ~vvv~ 471 (621)
T PRK03562 467 VLINA 471 (621)
T ss_pred EEEEE
Confidence 77654
No 477
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=65.25 E-value=20 Score=30.87 Aligned_cols=43 Identities=23% Similarity=0.194 Sum_probs=30.8
Q ss_pred CCCEEEEEcCC-ccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHH
Q psy7826 122 EGKKVLDIGSG-NGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN 166 (213)
Q Consensus 122 ~~~~vLDiG~G-~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~ 166 (213)
++.+|+=+|+| .|..+...+..+| .+|+.+|.+++.++.+...
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~~~ 209 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLDAE 209 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHh
Confidence 34568889988 4566666677665 4799999998877665544
No 478
>PRK07832 short chain dehydrogenase; Provisional
Probab=65.23 E-value=59 Score=26.11 Aligned_cols=77 Identities=6% Similarity=-0.045 Sum_probs=45.9
Q ss_pred EEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC----------CC
Q psy7826 125 KVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY----------LD 193 (213)
Q Consensus 125 ~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~----------~~ 193 (213)
++|=.|+ +|+.+..+++.+- ...+|+.++.+++.++...+.+...+ ...+.+..+|+.+.. ..
T Consensus 2 ~vlItGa-s~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 75 (272)
T PRK07832 2 RCFVTGA-ASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALG-----GTVPEHRALDISDYDAVAAFAADIHAA 75 (272)
T ss_pred EEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-----CCcceEEEeeCCCHHHHHHHHHHHHHh
Confidence 4566665 4555555555432 22578888988887776666655433 233556678876311 01
Q ss_pred CCCcCEEEEcCcCc
Q psy7826 194 EAPYDIIHVGGSIE 207 (213)
Q Consensus 194 ~~~fD~Ii~~~~~~ 207 (213)
.++.|.++.+.+..
T Consensus 76 ~~~id~lv~~ag~~ 89 (272)
T PRK07832 76 HGSMDVVMNIAGIS 89 (272)
T ss_pred cCCCCEEEECCCCC
Confidence 23589999888654
No 479
>PLN02650 dihydroflavonol-4-reductase
Probab=65.16 E-value=40 Score=28.34 Aligned_cols=80 Identities=14% Similarity=0.025 Sum_probs=47.0
Q ss_pred CCEEEEEcCCccHHHHHHHHHcCCC-CEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC--C-CCCcC
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVGKT-GKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL--D-EAPYD 198 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~--~-~~~fD 198 (213)
.++||=.| |+|+.+.++++.+-.. .+|++++.+..............+. ..+++++.+|+.+... . ...+|
T Consensus 5 ~k~iLVTG-atGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~v~~Dl~d~~~~~~~~~~~d 79 (351)
T PLN02650 5 KETVCVTG-ASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGA----TTRLTLWKADLAVEGSFDDAIRGCT 79 (351)
T ss_pred CCEEEEeC-CcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCC----CCceEEEEecCCChhhHHHHHhCCC
Confidence 34677655 6889888888776332 4888887766544433322211110 1357889999874211 0 12478
Q ss_pred EEEEcCcCc
Q psy7826 199 IIHVGGSIE 207 (213)
Q Consensus 199 ~Ii~~~~~~ 207 (213)
.|+-.++..
T Consensus 80 ~ViH~A~~~ 88 (351)
T PLN02650 80 GVFHVATPM 88 (351)
T ss_pred EEEEeCCCC
Confidence 888777643
No 480
>PRK06123 short chain dehydrogenase; Provisional
Probab=64.99 E-value=57 Score=25.51 Aligned_cols=77 Identities=14% Similarity=0.034 Sum_probs=44.3
Q ss_pred CEEEEEcCCccHHHHHHHHHcCCCC-EEEEEe-CChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC---------
Q psy7826 124 KKVLDIGSGNGYFTALLAWCVGKTG-KVIGIE-HIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL--------- 192 (213)
Q Consensus 124 ~~vLDiG~G~G~~t~~la~~~~~~~-~v~gvD-~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~--------- 192 (213)
.++|=.|+ +|+++..+++.+-..+ +++..+ .++...+.....+...+ .++.++.+|+.+...
T Consensus 3 ~~~lVtG~-~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (248)
T PRK06123 3 KVMIITGA-SRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQG------GEALAVAADVADEADVLRLFEAVD 75 (248)
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCC------CcEEEEEeccCCHHHHHHHHHHHH
Confidence 46788885 5666666666553333 666555 34444444444444433 357788888873210
Q ss_pred -CCCCcCEEEEcCcCc
Q psy7826 193 -DEAPYDIIHVGGSIE 207 (213)
Q Consensus 193 -~~~~fD~Ii~~~~~~ 207 (213)
..++.|.|+.+++..
T Consensus 76 ~~~~~id~li~~ag~~ 91 (248)
T PRK06123 76 RELGRLDALVNNAGIL 91 (248)
T ss_pred HHhCCCCEEEECCCCC
Confidence 113579999988764
No 481
>PRK06500 short chain dehydrogenase; Provisional
Probab=64.89 E-value=65 Score=25.16 Aligned_cols=76 Identities=13% Similarity=0.066 Sum_probs=45.6
Q ss_pred CCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC----------
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY---------- 191 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~---------- 191 (213)
++++|=.|++ |..+..+++.+- ...+|+.++.++..++...+.. + .++.++.+|..+..
T Consensus 6 ~k~vlItGas-g~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~---~------~~~~~~~~D~~~~~~~~~~~~~~~ 75 (249)
T PRK06500 6 GKTALITGGT-SGIGLETARQFLAEGARVAITGRDPASLEAARAEL---G------ESALVIRADAGDVAAQKALAQALA 75 (249)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHh---C------CceEEEEecCCCHHHHHHHHHHHH
Confidence 4577777764 555555555442 2258999998876655444332 2 25677888876311
Q ss_pred CCCCCcCEEEEcCcCcc
Q psy7826 192 LDEAPYDIIHVGGSIED 208 (213)
Q Consensus 192 ~~~~~fD~Ii~~~~~~~ 208 (213)
...+++|.|+.+++..+
T Consensus 76 ~~~~~id~vi~~ag~~~ 92 (249)
T PRK06500 76 EAFGRLDAVFINAGVAK 92 (249)
T ss_pred HHhCCCCEEEECCCCCC
Confidence 01136899998876543
No 482
>PRK07454 short chain dehydrogenase; Provisional
Probab=64.69 E-value=66 Score=25.11 Aligned_cols=79 Identities=9% Similarity=-0.053 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCC-CCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC-----C--
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-----D-- 193 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~-----~-- 193 (213)
..+++|=.|+ +|..+..+++.+.. ..+|+.++.++...+...+.+...+ .++.++.+|+.+... .
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~ 77 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG------VKAAAYSIDLSNPEAIAPGIAEL 77 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC------CcEEEEEccCCCHHHHHHHHHHH
Confidence 3457888885 67777777665532 2489999998877766655554432 368889999874210 0
Q ss_pred ---CCCcCEEEEcCcCc
Q psy7826 194 ---EAPYDIIHVGGSIE 207 (213)
Q Consensus 194 ---~~~fD~Ii~~~~~~ 207 (213)
.++.|.++.+++..
T Consensus 78 ~~~~~~id~lv~~ag~~ 94 (241)
T PRK07454 78 LEQFGCPDVLINNAGMA 94 (241)
T ss_pred HHHcCCCCEEEECCCcc
Confidence 13579999888754
No 483
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=64.59 E-value=58 Score=27.05 Aligned_cols=78 Identities=12% Similarity=-0.032 Sum_probs=47.8
Q ss_pred CCEEEEEcCCccHHHHHHHHHcC-CC-CEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC---------
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVG-KT-GKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY--------- 191 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~-~~-~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~--------- 191 (213)
+.++|=.|++. +++..+++.+- .. .+|+.+..++...+.+.+.+... ..++.++.+|+.+..
T Consensus 3 ~k~vlITGas~-GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~~~v~~~~~~~ 75 (314)
T TIGR01289 3 KPTVIITGASS-GLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMP------KDSYTIMHLDLGSLDSVRQFVQQF 75 (314)
T ss_pred CCEEEEECCCC-hHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCC------CCeEEEEEcCCCCHHHHHHHHHHH
Confidence 45677777654 44555555432 22 48888888887776555554322 235778888986321
Q ss_pred -CCCCCcCEEEEcCcCc
Q psy7826 192 -LDEAPYDIIHVGGSIE 207 (213)
Q Consensus 192 -~~~~~fD~Ii~~~~~~ 207 (213)
...+..|+++.++++.
T Consensus 76 ~~~~~~iD~lI~nAG~~ 92 (314)
T TIGR01289 76 RESGRPLDALVCNAAVY 92 (314)
T ss_pred HHhCCCCCEEEECCCcc
Confidence 0124689999998763
No 484
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=64.52 E-value=25 Score=26.33 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=22.9
Q ss_pred CEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCC
Q psy7826 124 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHI 156 (213)
Q Consensus 124 ~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s 156 (213)
.-|||+|-|.|..=-++.+.+ |+-+|+.+|..
T Consensus 30 G~VlElGLGNGRTydHLRe~~-p~R~I~vfDR~ 61 (160)
T PF12692_consen 30 GPVLELGLGNGRTYDHLREIF-PDRRIYVFDRA 61 (160)
T ss_dssp S-EEEE--TTSHHHHHHHHH---SS-EEEEESS
T ss_pred CceEEeccCCCccHHHHHHhC-CCCeEEEEeee
Confidence 469999999999999999998 66799998854
No 485
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=64.05 E-value=34 Score=29.14 Aligned_cols=78 Identities=22% Similarity=0.085 Sum_probs=44.2
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHcCCCCEEEEEeCCh---------------------HHHHHHHHHHhhCCCCCccCCC
Q psy7826 122 EGKKVLDIGSGN-GYFTALLAWCVGKTGKVIGIEHIP---------------------QLVQRATHNVISGNPEFVKDGR 179 (213)
Q Consensus 122 ~~~~vLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~---------------------~~l~~a~~~~~~~gl~~~~~~~ 179 (213)
...+|+=+|||. |...+....+.| -++++-+|.+. ...+.+++.+++.+. .-+
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aG-vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp----~v~ 97 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAG-IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINS----EVE 97 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCC----CcE
Confidence 346899999973 443333333333 25888888763 355666777776542 234
Q ss_pred eEEEEcCCCCCC-C-CCCCcCEEEEcC
Q psy7826 180 IKFVLGDGRKGY-L-DEAPYDIIHVGG 204 (213)
Q Consensus 180 v~~~~~d~~~~~-~-~~~~fD~Ii~~~ 204 (213)
++.+..+..... . ....+|+|+...
T Consensus 98 i~~~~~~~~~~~~~~~~~~~DlVid~~ 124 (338)
T PRK12475 98 IVPVVTDVTVEELEELVKEVDLIIDAT 124 (338)
T ss_pred EEEEeccCCHHHHHHHhcCCCEEEEcC
Confidence 566666654110 0 123589888753
No 486
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=63.74 E-value=25 Score=26.70 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=40.4
Q ss_pred EcCCccHHHHHHHHHcCCCCEEEE--EeCChHHHHHHH---HHHhhCCCCCccCCCeEE-EEcCCCCC--CC--CCCCcC
Q psy7826 129 IGSGNGYFTALLAWCVGKTGKVIG--IEHIPQLVQRAT---HNVISGNPEFVKDGRIKF-VLGDGRKG--YL--DEAPYD 198 (213)
Q Consensus 129 iG~G~G~~t~~la~~~~~~~~v~g--vD~s~~~l~~a~---~~~~~~gl~~~~~~~v~~-~~~d~~~~--~~--~~~~fD 198 (213)
+|=|-=++|..|++..+....+++ +|..+...+... .+++.+. ...+.+ .-.|+... .. ....||
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~-----~~g~~V~~~VDat~l~~~~~~~~~~FD 77 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR-----ELGVTVLHGVDATKLHKHFRLKNQRFD 77 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh-----hcCCccccCCCCCcccccccccCCcCC
Confidence 455555677888888753446665 465555554433 4554432 223333 33465521 11 346899
Q ss_pred EEEEcCc
Q psy7826 199 IIHVGGS 205 (213)
Q Consensus 199 ~Ii~~~~ 205 (213)
+|+.|+.
T Consensus 78 rIiFNFP 84 (166)
T PF10354_consen 78 RIIFNFP 84 (166)
T ss_pred EEEEeCC
Confidence 9999974
No 487
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=63.69 E-value=20 Score=29.21 Aligned_cols=45 Identities=27% Similarity=0.387 Sum_probs=32.6
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHcCCCCEEEEEeCChHHHHHHHH
Q psy7826 120 LTEGKKVLDIGSGN-GYFTALLAWCVGKTGKVIGIEHIPQLVQRATH 165 (213)
Q Consensus 120 ~~~~~~vLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 165 (213)
..++++||=.|+|+ |..+..+|+..|. .+|+++|.++..++.+++
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~-~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGA-ARVVAADPSPDRRELALS 163 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH
Confidence 45788999998763 4555667777642 258999999988877765
No 488
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=63.23 E-value=30 Score=31.93 Aligned_cols=62 Identities=11% Similarity=-0.017 Sum_probs=40.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCE
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDI 199 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~ 199 (213)
..+..+|| +.||+|--|..+.+. ..++.++++|+ ++++.++|+.+.......+|+
T Consensus 503 ~~k~mKIL-vaCGsGiGTStmva~------------------kIkk~Lke~GI------~veV~~~~Vsev~s~~~~aDI 557 (602)
T PRK09548 503 GGKPVRIL-AVCGQGQGSSMMMKM------------------KIKKYLDKRGI------PIIMDSCAVNDYKGKLETIDI 557 (602)
T ss_pred cCcccEEE-EECCCCchHHHHHHH------------------HHHHHHHHcCC------CeEEEEechHhCcccCCCCCE
Confidence 34455676 789999887666553 23566677774 367888888754333346899
Q ss_pred EEEcCcC
Q psy7826 200 IHVGGSI 206 (213)
Q Consensus 200 Ii~~~~~ 206 (213)
|++...+
T Consensus 558 IVtt~~L 564 (602)
T PRK09548 558 IVCSKHL 564 (602)
T ss_pred EEEcccc
Confidence 8887553
No 489
>PRK06198 short chain dehydrogenase; Provisional
Probab=63.13 E-value=50 Score=26.11 Aligned_cols=79 Identities=13% Similarity=0.062 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCC-CCE-EEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC-------
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGK-TGK-VIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL------- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~-~~~-v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~------- 192 (213)
.+++++=.|+ +|..+..+++.+-. ..+ |+.++.++...+.....+...+ ..+.++..|+.+...
T Consensus 5 ~~k~vlItGa-~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~D~~~~~~~~~~~~~ 77 (260)
T PRK06198 5 DGKVALVTGG-TQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALG------AKAVFVQADLSDVEDCRRVVAA 77 (260)
T ss_pred CCcEEEEeCC-CchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcC------CeEEEEEccCCCHHHHHHHHHH
Confidence 4567888886 45566666655422 235 8999988766655444443332 357788888863210
Q ss_pred ---CCCCcCEEEEcCcCc
Q psy7826 193 ---DEAPYDIIHVGGSIE 207 (213)
Q Consensus 193 ---~~~~fD~Ii~~~~~~ 207 (213)
..+..|.|+.+.+..
T Consensus 78 ~~~~~g~id~li~~ag~~ 95 (260)
T PRK06198 78 ADEAFGRLDALVNAAGLT 95 (260)
T ss_pred HHHHhCCCCEEEECCCcC
Confidence 013589999888754
No 490
>PRK08324 short chain dehydrogenase; Validated
Probab=63.01 E-value=57 Score=30.56 Aligned_cols=78 Identities=18% Similarity=0.080 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC-----C---
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-----L--- 192 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~-----~--- 192 (213)
+++++|=.|++ |+.+..+++.+- ...+|+.+|.++..++.+.+.+.. ..++.++.+|+.+.. .
T Consensus 421 ~gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~-------~~~v~~v~~Dvtd~~~v~~~~~~~ 492 (681)
T PRK08324 421 AGKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGG-------PDRALGVACDVTDEAAVQAAFEEA 492 (681)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhc-------cCcEEEEEecCCCHHHHHHHHHHH
Confidence 45788888764 455555554432 225899999998877766655432 136788888986321 0
Q ss_pred --CCCCcCEEEEcCcCc
Q psy7826 193 --DEAPYDIIHVGGSIE 207 (213)
Q Consensus 193 --~~~~fD~Ii~~~~~~ 207 (213)
..+.+|+|+.+++..
T Consensus 493 ~~~~g~iDvvI~~AG~~ 509 (681)
T PRK08324 493 ALAFGGVDIVVSNAGIA 509 (681)
T ss_pred HHHcCCCCEEEECCCCC
Confidence 123689999988754
No 491
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=62.98 E-value=67 Score=26.36 Aligned_cols=77 Identities=18% Similarity=0.214 Sum_probs=57.4
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCC----CCCCCC
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK----GYLDEA 195 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~----~~~~~~ 195 (213)
+.++.+ |..-||+-.++..+.+.- -++..+|..+.=....+.++.. ..++.+..+|... ..++..
T Consensus 87 lN~~~~-l~~YpGSP~lA~~llR~q---DRl~l~ELHp~D~~~L~~~f~~-------d~~vrv~~~DG~~~l~a~LPP~e 155 (279)
T COG2961 87 LNPGGG-LRYYPGSPLLARQLLREQ---DRLVLTELHPSDAPLLRNNFAG-------DRRVRVLRGDGFLALKAHLPPKE 155 (279)
T ss_pred hCCCCC-cccCCCCHHHHHHHcchh---ceeeeeecCccHHHHHHHHhCC-------CcceEEEecCcHHHHhhhCCCCC
Confidence 455544 889999998888887652 5899999999999999999874 6789999999872 233333
Q ss_pred CcCEEEEcCcCc
Q psy7826 196 PYDIIHVGGSIE 207 (213)
Q Consensus 196 ~fD~Ii~~~~~~ 207 (213)
.=-+|+++...+
T Consensus 156 rRglVLIDPPfE 167 (279)
T COG2961 156 RRGLVLIDPPFE 167 (279)
T ss_pred cceEEEeCCCcc
Confidence 446777776544
No 492
>PRK08278 short chain dehydrogenase; Provisional
Probab=62.89 E-value=60 Score=26.15 Aligned_cols=80 Identities=15% Similarity=0.181 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCC-CCEEEEEeCChHH-------HHHHHHHHhhCCCCCccCCCeEEEEcCCCCCC--
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQL-------VQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-- 191 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~-------l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~-- 191 (213)
.++++|=.|++ |+++..+++.+-. ..+|+.++.+... ++...+.+...+ .++.++.+|+.+..
T Consensus 5 ~~k~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~D~~~~~~i 77 (273)
T PRK08278 5 SGKTLFITGAS-RGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAG------GQALPLVGDVRDEDQV 77 (273)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcC------CceEEEEecCCCHHHH
Confidence 35678888874 5556666655422 2588888876432 333334444433 36788889987321
Q ss_pred ---C-----CCCCcCEEEEcCcCcc
Q psy7826 192 ---L-----DEAPYDIIHVGGSIED 208 (213)
Q Consensus 192 ---~-----~~~~fD~Ii~~~~~~~ 208 (213)
. ..+.+|.++.+++...
T Consensus 78 ~~~~~~~~~~~g~id~li~~ag~~~ 102 (273)
T PRK08278 78 AAAVAKAVERFGGIDICVNNASAIN 102 (273)
T ss_pred HHHHHHHHHHhCCCCEEEECCCCcC
Confidence 0 0136899999987643
No 493
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=62.83 E-value=79 Score=28.01 Aligned_cols=73 Identities=16% Similarity=0.156 Sum_probs=41.3
Q ss_pred CCCEEEEEcCCccHHH-HHHHHHcCCCCEEEEEeCChH-HHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCCCCCCcCE
Q psy7826 122 EGKKVLDIGSGNGYFT-ALLAWCVGKTGKVIGIEHIPQ-LVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDI 199 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t-~~la~~~~~~~~v~gvD~s~~-~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~~~~~fD~ 199 (213)
.+.+|+=+|+|.-+.+ +.++...| .+|+.+|.++. ......+.++..| +.+..++... . ...+|+
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G--~~V~~~d~~~~~~~~~~~~~l~~~g--------v~~~~~~~~~-~--~~~~D~ 81 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELG--ARVTVVDDGDDERHRALAAILEALG--------ATVRLGPGPT-L--PEDTDL 81 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhhhHHHHHHHHHcC--------CEEEECCCcc-c--cCCCCE
Confidence 4568999999854443 22233323 58999996643 3333344455444 5566554332 1 135899
Q ss_pred EEEcCcCc
Q psy7826 200 IHVGGSIE 207 (213)
Q Consensus 200 Ii~~~~~~ 207 (213)
|+...++.
T Consensus 82 Vv~s~Gi~ 89 (480)
T PRK01438 82 VVTSPGWR 89 (480)
T ss_pred EEECCCcC
Confidence 98876653
No 494
>PLN02214 cinnamoyl-CoA reductase
Probab=62.66 E-value=38 Score=28.57 Aligned_cols=78 Identities=17% Similarity=0.125 Sum_probs=47.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCC-CEEEEEeCChHHHHHH-HHHHhhCCCCCccCCCeEEEEcCCCCCCC---CCCC
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKT-GKVIGIEHIPQLVQRA-THNVISGNPEFVKDGRIKFVLGDGRKGYL---DEAP 196 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~-~~v~gvD~s~~~l~~a-~~~~~~~gl~~~~~~~v~~~~~d~~~~~~---~~~~ 196 (213)
++++||=.|+ +|+.+.++++.+-.. .+|+++..+....... .+.+.. + ..+++++.+|+.+... ....
T Consensus 9 ~~~~vlVTGa-tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~-~-----~~~~~~~~~Dl~d~~~~~~~~~~ 81 (342)
T PLN02214 9 AGKTVCVTGA-GGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEG-G-----KERLILCKADLQDYEALKAAIDG 81 (342)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhC-C-----CCcEEEEecCcCChHHHHHHHhc
Confidence 4567888886 789888887765322 4788887765432211 112211 1 2358888999874211 0124
Q ss_pred cCEEEEcCcC
Q psy7826 197 YDIIHVGGSI 206 (213)
Q Consensus 197 fD~Ii~~~~~ 206 (213)
+|.|+-.++.
T Consensus 82 ~d~Vih~A~~ 91 (342)
T PLN02214 82 CDGVFHTASP 91 (342)
T ss_pred CCEEEEecCC
Confidence 7998888764
No 495
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=62.62 E-value=79 Score=25.91 Aligned_cols=45 Identities=11% Similarity=0.125 Sum_probs=29.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHHcCCC--CEEEEEeCChHHHHHHHHHHh
Q psy7826 122 EGKKVLDIGSGNGYFTALLAWCVGKT--GKVIGIEHIPQLVQRATHNVI 168 (213)
Q Consensus 122 ~~~~vLDiG~G~G~~t~~la~~~~~~--~~v~gvD~s~~~l~~a~~~~~ 168 (213)
.+.+||=+|+ |+.+..++..+... .+|+.++.+.+..+...+.+.
T Consensus 122 ~~k~vlVlGa--Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~ 168 (278)
T PRK00258 122 KGKRILILGA--GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFG 168 (278)
T ss_pred CCCEEEEEcC--cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhh
Confidence 4678999987 55555555443211 489999999877766655543
No 496
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=62.10 E-value=36 Score=29.03 Aligned_cols=76 Identities=25% Similarity=0.173 Sum_probs=42.9
Q ss_pred CCEEEEEcCC-ccHHHHHHHHHcCCCCEEEEEeCCh---------------------HHHHHHHHHHhhCCCCCccCCCe
Q psy7826 123 GKKVLDIGSG-NGYFTALLAWCVGKTGKVIGIEHIP---------------------QLVQRATHNVISGNPEFVKDGRI 180 (213)
Q Consensus 123 ~~~vLDiG~G-~G~~t~~la~~~~~~~~v~gvD~s~---------------------~~l~~a~~~~~~~gl~~~~~~~v 180 (213)
..+|+=+||| .|...+......| -++++-+|.+. ...+.+++++++.+. .-++
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aG-vg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp----~v~v 98 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAG-VGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINS----DVRV 98 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCC----CcEE
Confidence 4689999997 3443333222323 35899998763 355666677766542 2245
Q ss_pred EEEEcCCCCCC--CCCCCcCEEEEc
Q psy7826 181 KFVLGDGRKGY--LDEAPYDIIHVG 203 (213)
Q Consensus 181 ~~~~~d~~~~~--~~~~~fD~Ii~~ 203 (213)
+....++.... .....||+|+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~DlVid~ 123 (339)
T PRK07688 99 EAIVQDVTAEELEELVTGVDLIIDA 123 (339)
T ss_pred EEEeccCCHHHHHHHHcCCCEEEEc
Confidence 55555554211 112358998865
No 497
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=62.07 E-value=24 Score=28.33 Aligned_cols=47 Identities=28% Similarity=0.341 Sum_probs=34.6
Q ss_pred hCCCCCEEEEEcCCc-cHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHH
Q psy7826 119 ELTEGKKVLDIGSGN-GYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN 166 (213)
Q Consensus 119 ~~~~~~~vLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~ 166 (213)
.+.+++++|-.|+|. |..+..+|+..+.. +|++++.+++..+.+++.
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~-~vi~~~~~~~~~~~~~~~ 141 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKAAGAR-EVVGVDPDAARRELAEAL 141 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCC-cEEEECCCHHHHHHHHHc
Confidence 467888888888765 66677778876522 499999998888766643
No 498
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=61.95 E-value=30 Score=29.15 Aligned_cols=47 Identities=19% Similarity=0.317 Sum_probs=37.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHcCCCCEEEEEeCChHHHHHHHHHHhh
Q psy7826 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS 169 (213)
Q Consensus 120 ~~~~~~vLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~ 169 (213)
...+.+|.-+|+|--....++++. | .+|..||++++.+..-+-.+..
T Consensus 61 ~g~ghrivtigSGGcn~L~ylsr~--P-a~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 61 LGIGHRIVTIGSGGCNMLAYLSRA--P-ARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred cCCCcEEEEecCCcchHHHHhhcC--C-ceeEEEeCCHHHHHHHHHHHHH
Confidence 677889999999877677777764 3 6999999999998777665543
No 499
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=61.82 E-value=62 Score=25.53 Aligned_cols=72 Identities=15% Similarity=0.118 Sum_probs=44.0
Q ss_pred EEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC----------C
Q psy7826 125 KVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL----------D 193 (213)
Q Consensus 125 ~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~----------~ 193 (213)
++|=.|+ +|+.+..+++.+- ...+|+.++.++..++.....+ + .++.++.+|+.+... .
T Consensus 2 ~vlItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~---~------~~~~~~~~Dl~~~~~i~~~~~~~~~~ 71 (248)
T PRK10538 2 IVLVTGA-TAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL---G------DNLYIAQLDVRNRAAIEEMLASLPAE 71 (248)
T ss_pred EEEEECC-CchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---c------cceEEEEecCCCHHHHHHHHHHHHHH
Confidence 4555554 5566666665542 2358999999887665544332 2 357788888863210 1
Q ss_pred CCCcCEEEEcCcC
Q psy7826 194 EAPYDIIHVGGSI 206 (213)
Q Consensus 194 ~~~fD~Ii~~~~~ 206 (213)
.+..|.|+.+++.
T Consensus 72 ~~~id~vi~~ag~ 84 (248)
T PRK10538 72 WRNIDVLVNNAGL 84 (248)
T ss_pred cCCCCEEEECCCc
Confidence 1358999988765
No 500
>PRK06182 short chain dehydrogenase; Validated
Probab=61.81 E-value=56 Score=26.22 Aligned_cols=73 Identities=14% Similarity=0.034 Sum_probs=46.0
Q ss_pred CCEEEEEcCCccHHHHHHHHHcC-CCCEEEEEeCChHHHHHHHHHHhhCCCCCccCCCeEEEEcCCCCCCC---------
Q psy7826 123 GKKVLDIGSGNGYFTALLAWCVG-KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL--------- 192 (213)
Q Consensus 123 ~~~vLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~~~~~v~~~~~d~~~~~~--------- 192 (213)
++++|=.|+ +|+.+..+++.+- ...+|++++.+++.++... . .++.++.+|+.+...
T Consensus 3 ~k~vlItGa-sggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~----~--------~~~~~~~~Dv~~~~~~~~~~~~~~ 69 (273)
T PRK06182 3 KKVALVTGA-SSGIGKATARRLAAQGYTVYGAARRVDKMEDLA----S--------LGVHPLSLDVTDEASIKAAVDTII 69 (273)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----h--------CCCeEEEeeCCCHHHHHHHHHHHH
Confidence 457887775 5666777766542 2358999998876654322 1 236778888863210
Q ss_pred -CCCCcCEEEEcCcCcc
Q psy7826 193 -DEAPYDIIHVGGSIED 208 (213)
Q Consensus 193 -~~~~fD~Ii~~~~~~~ 208 (213)
..+..|+++.+++...
T Consensus 70 ~~~~~id~li~~ag~~~ 86 (273)
T PRK06182 70 AEEGRIDVLVNNAGYGS 86 (273)
T ss_pred HhcCCCCEEEECCCcCC
Confidence 1136899999987643
Done!