RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7826
(213 letters)
>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate)
O-methyltransferase (PCMT).
Length = 210
Score = 137 bits (347), Expect = 9e-41
Identities = 70/161 (43%), Positives = 95/161 (59%), Gaps = 11/161 (6%)
Query: 55 EYLVEHLKETLFIESELPYKAMLAVDRGHYTTWR----PYANCITNIGYGAHMQAPFQQA 110
E L+E+LK I S+ +AMLAVDR + Y + +IGYG + AP A
Sbjct: 4 EALIENLKNYGVIASDKVAEAMLAVDREEFVPESFKSYAYEDIPLSIGYGQTISAPHMHA 63
Query: 111 MVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISG 170
M+L+ L EL G +VL+IGSG+GY TA A VG+ G V+ IEHIP+LV+ A N+
Sbjct: 64 MMLELL--ELKPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPELVEIARRNLEKL 121
Query: 171 NPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
E + V+GDGR+G+ + APYD IHVG + +IPE
Sbjct: 122 GLE-----NVIVVVGDGRQGWPEFAPYDAIHVGAAAPEIPE 157
>gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate)
O-methyltransferase. This is an all-kingdom (but not
all species) full-length ortholog enzyme for repairing
aging proteins. Among the prokaryotes, the gene name is
pcm. Among eukaryotes, pimt [Protein fate, Protein
modification and repair].
Length = 215
Score = 110 bits (277), Expect = 3e-30
Identities = 58/167 (34%), Positives = 84/167 (50%), Gaps = 27/167 (16%)
Query: 57 LVEHLKETLFIESELPYKAMLAVDRGHYT----TWRPYANCITNIGYGAHMQAPFQQAMV 112
L++ L +I+S+ A+L+V R + Y + IGYG + AP AM+
Sbjct: 10 LIDKLINEGYIKSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMM 69
Query: 113 LDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRAT-------- 164
+ L EL G KVL+IG+G+GY A+LA VG+ G V+ IE IP+L ++A
Sbjct: 70 TELL--ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL 127
Query: 165 HNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
NVI + GDG +G+ APYD I+V + IPE
Sbjct: 128 DNVI-----------VIV--GDGTQGWEPLAPYDRIYVTAAGPKIPE 161
>gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 212
Score = 106 bits (267), Expect = 1e-28
Identities = 59/167 (35%), Positives = 91/167 (54%), Gaps = 11/167 (6%)
Query: 49 MEKKPMEYLVEHLKETLFIESELPYKAMLAVDRGHYT--TWRPYANCIT--NIGYGAHMQ 104
M + ++E L +I+S+ A+L V R + YA T IGYG +
Sbjct: 1 MPLEEKRRVIEELIREGYIKSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTIS 60
Query: 105 APFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRAT 164
A A++ + L +L EG KVL+IG+G+GY A++A VGK+GKV+ IE IP+L ++A
Sbjct: 61 AIHMVAIMCELL--DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAK 118
Query: 165 HNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
+ + V + ++GDG GY + APYD I+V + DIP+
Sbjct: 119 KTLKKLGYDNV-----EVIVGDGTLGYEENAPYDRIYVTAAGPDIPK 160
>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 209
Score = 104 bits (262), Expect = 5e-28
Identities = 57/160 (35%), Positives = 81/160 (50%), Gaps = 17/160 (10%)
Query: 57 LVEHLKETLFIESELPYKAMLAVDR-----GHYTTWRPYANCITNIGYGAHMQAPFQQAM 111
LVE L+ + + KA LAV R Y Y + IG G + AP A
Sbjct: 6 LVERLRTEGITDERV-LKAFLAVPRELFVPAAYKH-LAYEDRALPIGCGQTISAPHMVAR 63
Query: 112 VLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGN 171
+L L EL G +VL+IG+G+GY A+LA VG+ V+ IE I +L ++A N+
Sbjct: 64 MLQLL--ELKPGDRVLEIGTGSGYQAAVLARLVGR---VVSIERIEELAEQARRNL---- 114
Query: 172 PEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
E + + GDG KG+ +EAPYD I V + ++PE
Sbjct: 115 -ETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVPE 153
>gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase;
Reviewed.
Length = 212
Score = 74.5 bits (184), Expect = 1e-16
Identities = 49/172 (28%), Positives = 73/172 (42%), Gaps = 19/172 (11%)
Query: 46 GTKMEKKPMEYLVEHLKETLFIESELPYKAMLAVDRGHYT--TWRPYANCITN--IGYGA 101
ME + LV L+ I E +A+ A R + ++ A IG G
Sbjct: 1 ARLMESERFARLVLRLRA-EGILDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQ 59
Query: 102 HMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQ 161
+ P+ A + + L EL G +VL+IG+G+GY A+LA V + V +E I L
Sbjct: 60 TISQPYMVARMTELL--ELKPGDRVLEIGTGSGYQAAVLAHLVRR---VFSVERIKTLQW 114
Query: 162 RATHNVISGNPEFVKDGR--IKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
A + G + GDG KG+ AP+D I V + +IP
Sbjct: 115 EAKRR-------LKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPEIPR 159
>gnl|CDD|234563 TIGR04364, methyltran_FxLD, methyltransferase, FxLD system.
Members of this family resemble occur regularly in the
vicinity of lantibiotic biosynthesis enzymes and their
probable target, the FxLD family of putative ribosomal
natural product precursor (TIGR04363). Members resemble
protein-L-isoaspartate O-methyltransferase (TIGR00080)
and a predicted methyltranserase, TIGR04188, of another
putative peptide modification system.
Length = 394
Score = 72.8 bits (179), Expect = 3e-15
Identities = 52/168 (30%), Positives = 68/168 (40%), Gaps = 25/168 (14%)
Query: 57 LVEHLKETLFIESELPYKAMLAVDRGH-----------YTTWRPYANCITNIGYGA---H 102
LV+ L+E I S A V R H Y R GA
Sbjct: 8 LVDELREDGVIRSPRVEAAFRTVPR-HLFAPGAPLEKAYAANRAVV--TKRDEDGAALSS 64
Query: 103 MQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQR 162
+ AP QAM+L+ + G +VL+IGSG GY ALLA VG +G+V ++ + R
Sbjct: 65 VSAPHIQAMMLEQA--GVEPGMRVLEIGSG-GYNAALLAELVGPSGEVTTVDIDEDVTDR 121
Query: 163 ATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIP 210
A ++ VL D G + APYD I V DIP
Sbjct: 122 A-----RACLAAAGYPQVTVVLADAEAGVPELAPYDRIIVTVGAWDIP 164
>gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 205
Score = 68.7 bits (168), Expect = 2e-14
Identities = 52/164 (31%), Positives = 79/164 (48%), Gaps = 16/164 (9%)
Query: 57 LVEHLKETLFIESELPYKAMLAVDRGHYTT--WRPYA--NCITNIGYGAHMQAPFQQAMV 112
LVE L I+SE KAML+V R + +R A + + GA + AP AM+
Sbjct: 5 LVEELVREGIIKSERVKKAMLSVPREEFVMPEYRMMAYEDRPLPLFAGATISAPHMVAMM 64
Query: 113 LDDLSEELTE---GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS 169
EL E G K+L++G+G+GY A+ A + + GKV +E + +L A N+
Sbjct: 65 C-----ELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIE- 118
Query: 170 GNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEGI 213
G ++ GDG++G AP+D I V + IP +
Sbjct: 119 ---RLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIPSAL 159
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 58.5 bits (142), Expect = 2e-11
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIK 181
G +VLDIG G G LA + +V G++ P++++ A N + RI
Sbjct: 1 PGARVLDIGCGTGSLAIELA-RLFPGARVTGVDLSPEMLELARENA-----KLALGPRIT 54
Query: 182 FVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
FV GD +D + +GG D+ E
Sbjct: 55 FVQGDAPDALDLLEGFDAVFIGGGGGDLLE 84
>gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 322
Score = 60.6 bits (147), Expect = 5e-11
Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 5/92 (5%)
Query: 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR 179
L +G +VL+IG G GY A+++ VG+ G V+ +E+ ++ + A NV +
Sbjct: 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNV-----RRLGIEN 132
Query: 180 IKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
+ FV GDG G + APYD+I V ++++PE
Sbjct: 133 VIFVCGDGYYGVPEFAPYDVIFVTVGVDEVPE 164
>gnl|CDD|234492 TIGR04188, methyltr_grsp, methyltransferase, ATP-grasp peptide
maturase system. Members of this protein family are
predicted SAM-dependent methyltransferases that
regularly occur in the context of a putative peptide
modification ATP-grasp enzyme (TIGR04187, related to
enzymes of microviridin maturation) and a putative
ribosomal peptide modification target (TIGR04186).
Length = 363
Score = 58.5 bits (142), Expect = 3e-10
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRA-THNVI 168
A +L+ L ++ +G +VL+IG+G GY ALL +G V +E P L RA +
Sbjct: 97 ARMLEAL--DVEDGHRVLEIGTGTGYSAALLCHRLG-DDNVTSVEVDPGLAARAASALAA 153
Query: 169 SGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIP 210
+G V V GDG G+ APYD I ++ +P
Sbjct: 154 AGYAPTV-------VTGDGLLGHPPRAPYDRIIATCAVRRVP 188
>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and
related methyltransferases [Translation, ribosomal
structure and biogenesis].
Length = 256
Score = 53.1 bits (128), Expect = 1e-08
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR 179
++ G +VL+ G+G+G TA LA VG G V E + A N+ EF R
Sbjct: 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENL----SEFGLGDR 147
Query: 180 IKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
+ LGD R+ +DE D + D+P+
Sbjct: 148 VTLKLGDVRE-GIDEEDVDAV-----FLDLPD 173
>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional.
Length = 241
Score = 52.2 bits (126), Expect = 2e-08
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 13/91 (14%)
Query: 108 QQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNV 167
+A + L+ + G +VLD+G G G LA VG G+V+GI+ ++ A
Sbjct: 7 YRARTFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERA 64
Query: 168 ISGNPEFVKDGRIKFVLGDG-----RKGYLD 193
P ++FV GD G D
Sbjct: 65 AGLGP------NVEFVRGDADGLPFPDGSFD 89
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This family
appears to be have methyltransferase activity.
Length = 151
Score = 50.9 bits (122), Expect = 3e-08
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR 179
L G KVLD+G G GY T +LA +G +V+GI+ + +++A N E
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYE-----N 55
Query: 180 IKFVLGD---GRKGYLDEAPYDIIHVGGSIEDIP 210
++F+ GD + L++ +D++ + +P
Sbjct: 56 VEFIQGDIEELPQLQLEDNSFDVVISNEVLNHLP 89
>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed.
Length = 272
Score = 49.2 bits (118), Expect = 3e-07
Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 18/82 (21%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLA-WCVGKTGKVIGIEHIPQLVQRATHNVISG---NPEF 174
EL G+ VLD+GSG G F LA VG TGKVIG++ P+++ +A N N EF
Sbjct: 74 ELKPGETVLDLGSGGG-FDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEF 132
Query: 175 VKDGRIKFVLGDGRKGYLDEAP 196
R G ++ P
Sbjct: 133 -------------RLGEIEALP 141
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 44.0 bits (104), Expect = 3e-06
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 8/88 (9%)
Query: 125 KVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVL 184
+VLD+G G G LA G +V G++ P ++ A + + ++ +
Sbjct: 1 RVLDLGCGTGALALALASGPGA--RVTGVDISPVALELARKAAAALLAD-----NVEVLK 53
Query: 185 GDGRKGYLDE-APYDIIHVGGSIEDIPE 211
GD + + +D+I + + E
Sbjct: 54 GDAEELPPEADESFDVIISDPPLHHLVE 81
>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain. This family
contains methyltransferase domains.
Length = 117
Score = 41.3 bits (97), Expect = 4e-05
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 123 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKF 182
G +VLD G+G+G F A G +V+G+E P+ A + R++
Sbjct: 1 GDRVLDPGAGSGAFLLAAAR-AGPDARVVGVELDPEAAALARRRLALAGL----APRVRV 55
Query: 183 VLGDGRK-GYLDEAPYDII 200
V+GD R+ L + +D++
Sbjct: 56 VVGDARELLELPDGSFDLV 74
>gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase.
This model represents the
S-adenosylmethionine-dependent O-methyltransferase
responsible for methylation of magnesium protoporphyrin
IX. This step is essentiasl for the biosynthesis of both
chlorophyll and bacteriochlorophyll. This model
encompasses two closely related clades, from
cyanobacteria (and plants) where it is called ChlM and
other photosynthetic bacteria where it is known as BchM
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Chlorophyll and bacteriochlorphyll].
Length = 219
Score = 40.6 bits (95), Expect = 2e-04
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 15/96 (15%)
Query: 109 QAMV---LDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRAT 164
AM LD L ++ +GK+VLD G G G + LA K G V ++ Q+VQ A
Sbjct: 39 AAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELA----KRGAIVKAVDISEQMVQMAR 94
Query: 165 HNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 200
+ G ++F + D +DI+
Sbjct: 95 NR----AQGRDVAGNVEFEVNDLLS---LCGEFDIV 123
>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 92
Score = 37.6 bits (88), Expect = 5e-04
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 13/85 (15%)
Query: 127 LDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGD 186
LD+G G G LA G V G++ P+++ A KFV+GD
Sbjct: 1 LDVGCGTGLLAEALARRGGAR--VTGVDLSPEMLALARKR-----------APRKFVVGD 47
Query: 187 GRKGYLDEAPYDIIHVGGSIEDIPE 211
+ +D++ + +P+
Sbjct: 48 AEDLPFPDESFDVVVSSLVLHHLPD 72
>gnl|CDD|237852 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Provisional.
Length = 258
Score = 39.5 bits (93), Expect = 6e-04
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 17/88 (19%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 178
E T+G VL+IG G G T LA + KV IE P+L + + + G
Sbjct: 26 EDTDGDPVLEIGPGKGALTDELA---KRAKKVYAIELDPRLAEFL-------RDDEIAAG 75
Query: 179 RIKFVLGDGRKGYLDEA-------PYDI 199
++ + GD K L E PY I
Sbjct: 76 NVEIIEGDALKVDLPEFNKVVSNLPYQI 103
>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase;
Provisional.
Length = 198
Score = 39.0 bits (91), Expect = 6e-04
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR 179
L +G +LDIG G G T + VG+TGKV ++ + + N +F
Sbjct: 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNA----EKFGVLNN 93
Query: 180 IKFVLGDGRKGYLDEAP-YDIIHVGGSIEDIPEGI 213
I + G+ + +D I +GG E + E I
Sbjct: 94 IVLIKGEAPEILFTINEKFDRIFIGGGSEKLKEII 128
>gnl|CDD|237291 PRK13168, rumA, 23S rRNA m(5)U1939 methyltransferase; Reviewed.
Length = 443
Score = 39.0 bits (92), Expect = 9e-04
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 109 QAMV---LDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATH 165
Q MV L+ L + G +VLD+ G G FT LA + V+G+E + +V+RA
Sbjct: 283 QKMVARALEWL--DPQPGDRVLDLFCGLGNFTLPLARQAAE---VVGVEGVEAMVERARE 337
Query: 166 N 166
N
Sbjct: 338 N 338
>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional.
Length = 188
Score = 38.3 bits (90), Expect = 0.001
Identities = 17/79 (21%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIK 181
+G +VL++G+G+G + KV+G++ P V+ A N N +++ ++
Sbjct: 23 KGDRVLEVGTGSGI---VAIVAAKNGKKVVGVDINPYAVECAKCNAKLNN---IRNNGVE 76
Query: 182 FVLGDGRKGYLDEAPYDII 200
+ D + + + +D+I
Sbjct: 77 VIRSDLFEPFRGDK-FDVI 94
>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].
Length = 187
Score = 38.0 bits (89), Expect = 0.001
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWC-VGKTGKVIGIEHIPQLVQRATHNVI 168
A+ L L G ++ DIG+G G T + W G +G+VI IE + ++ N
Sbjct: 24 ALTLSKL--RPRPGDRLWDIGAGTGSIT--IEWALAGPSGRVIAIERDEEALELIERNA- 78
Query: 169 SGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGS--IEDIPE 211
++ V GD + D D I +GG IE+I E
Sbjct: 79 ----ARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGGGNIEEILE 119
>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase.
MenG is a generic term for a methyltransferase that
catalyzes the last step in menaquinone biosynthesis; the
exact enzymatic activity differs for different MenG
because the menaquinone differ in their prenoid side
chains in different species. Members of this MenG
protein family are 2-heptaprenyl-1,4-naphthoquinone
methyltransferase, and are found together in operons
with the two subunits of the heptaprenyl diphosphate
synthase in Bacillus subtilis and related species
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 231
Score = 38.2 bits (89), Expect = 0.001
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR-- 179
G LD+ G ++ LA VG G VIG++ + N++S + VKD
Sbjct: 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDF--------SENMLSVGRQKVKDAGLH 96
Query: 180 -IKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
++ V G+ + D+ +D + +G + ++P+
Sbjct: 97 NVELVHGNAMELPFDDNSFDYVTIGFGLRNVPD 129
>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function
prediction only].
Length = 219
Score = 37.7 bits (88), Expect = 0.002
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 178
L+ K++L+IG+ GY +A + G++ IE + + A N+ E D
Sbjct: 56 RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENL----AEAGVDD 111
Query: 179 RIKFVL-GDGRKGYLDEA--PYDII 200
RI+ +L GD +D++
Sbjct: 112 RIELLLGGDALDVLSRLLDGSFDLV 136
>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 257
Score = 37.6 bits (84), Expect = 0.002
Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 6/119 (5%)
Query: 87 WRPYANCITNIGYGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGK 146
Y + + +++ L L G VLDIG G G LLA G+
Sbjct: 13 LELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLGVLDIGCGTGRLA-LLARLGGR 71
Query: 147 TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGS 205
V+G++ P+++ A E G + FV+ D G L + S
Sbjct: 72 GAYVVGVDLSPEMLALARARA-----EGAGLGLVDFVVADALGGVLPFEDSASFDLVIS 125
>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 154
Score = 36.7 bits (85), Expect = 0.003
Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 9/87 (10%)
Query: 99 YGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIP 157
Y + + L L L G +VLDIG G G LL + G V G++ P
Sbjct: 1 YRRQRERFLARL--LARLLPRLKPGGRVLDIGCGTGILLRLLR----ERGFDVTGVD--P 52
Query: 158 QLVQRATHNVISGNPEFVKDGRIKFVL 184
++ V G+ +
Sbjct: 53 SPAAVLIFSLFDAPDPAVLAGKYDLIT 79
>gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA
(uracil-5-)-methyltransferase [Translation, ribosomal
structure and biogenesis].
Length = 432
Score = 37.7 bits (88), Expect = 0.003
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 112 VLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN 166
L+ L EL G++VLD+ G G F LA + KV G+E P+ V+ A N
Sbjct: 285 ALEWL--ELAGGERVLDLYCGVGTFGLPLA---KRVKKVHGVEISPEAVEAAQEN 334
>gnl|CDD|215900 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase.
Length = 254
Score = 36.5 bits (85), Expect = 0.005
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 10/71 (14%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 178
L E VL+IG G G T LA + +V+ IE P+L +R
Sbjct: 26 NLQESDTVLEIGPGKGALTTELA---KRAKQVVAIEIDPRLAKRLQEK-------LALHP 75
Query: 179 RIKFVLGDGRK 189
++ V D K
Sbjct: 76 NVEVVHQDFLK 86
>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family.
Length = 233
Score = 36.3 bits (84), Expect = 0.006
Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG--- 178
G K LD+ G G +T L+ G +GKV+G++ N++ + K+
Sbjct: 47 RGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINE--------NMLKEGEKKAKEEGKY 98
Query: 179 RIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
I+F+ G+ + ++ +DI+ + + + P+
Sbjct: 99 NIEFLQGNAEELPFEDDSFDIVTISFGLRNFPD 131
>gnl|CDD|222236 pfam13578, Methyltransf_24, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 105
Score = 34.6 bits (80), Expect = 0.007
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 10/83 (12%)
Query: 127 LDIGSGNGYFTALLAWCV--GKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVL 184
++IG +G T LA + G++ I+ P A + D R++ +
Sbjct: 1 VEIGVYSGVSTLWLAQALKDNGLGRLYSIDPWPGAEAGAN-----LRKAGLAD-RVRLLR 54
Query: 185 GDGRK--GYLDEAPYDIIHVGGS 205
GD + L + D++ + G
Sbjct: 55 GDSLEALARLPDGSIDLLFIDGD 77
>gnl|CDD|227746 COG5459, COG5459, Predicted rRNA methylase [Translation, ribosomal
structure and biogenesis].
Length = 484
Score = 36.5 bits (84), Expect = 0.007
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 18/101 (17%)
Query: 48 KMEKKPMEYLVEHLKETLFIESELPYKAMLAVDRGHYTTWRPYANCITNIGYGAHMQA-- 105
K + ++ +K L S Y+A H C T++ A++ +
Sbjct: 41 KSKAINNNIMLVDIKNALRTLSTRYYRAEQRDGSLH---------CRTDMAVKAYIASRL 91
Query: 106 PFQQAMV---LDDLSEELTE--GKKVLDIGSGNGYFTALLA 141
P A V LD+L + + + + +LD+G+G G T L A
Sbjct: 92 PQTYASVRASLDELQKRVPDFAPQSILDVGAGPG--TGLWA 130
>gnl|CDD|233415 TIGR01444, fkbM_fam, methyltransferase, FkbM family. Members of
this family are characterized by two well-conserved
short regions separated by a variable in both sequence
and length. The first of the two regions is found in a
large number of proteins outside this subfamily, a
number of which have been characterized as
methyltransferases. One member of the present family,
FkbM, was shown to be required for a specific
methylation in the biosynthesis of the immunosuppressant
FK506 in Streptomyces strain MA6548.
Length = 144
Score = 35.4 bits (82), Expect = 0.008
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Query: 126 VLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNV-ISGNPEFV--------K 176
V+D+G+ G F+ A + G+VI E +P + NV ++ P V +
Sbjct: 2 VIDVGANIGDFSLYFARKGAE-GRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR 60
Query: 177 DGRIKF 182
DG ++F
Sbjct: 61 DGELEF 66
>gnl|CDD|233115 TIGR00755, ksgA, dimethyladenosine transferase. In both E. coli
and Saccharomyces cerevisiae, this protein is
responsible for the dimethylation of two adjacent
adenosine residues in a conserved hairpin of 16S rRNA in
bacteria, 18S rRNA in eukaryotes. This adjacent
dimethylation is the only rRNA modification shared by
bacteria and eukaryotes. A single member of this family
is present in each of the first 20 completed microbial
genomes. This protein is essential in yeast, but not in
E. coli, where its deletion leads to resistance to the
antibiotic kasugamycin. Alternate name:
S-adenosylmethionine--6-N',N'-adenosyl (rRNA)
dimethyltransferase [Protein synthesis, tRNA and rRNA
base modification].
Length = 253
Score = 35.7 bits (83), Expect = 0.009
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 178
+ EG VL+IG G G T L + KV IE +L +R +
Sbjct: 26 NVLEGDVVLEIGPGLGALTEPLL---KRAKKVTAIEIDRRLAERLRKLLS-------LYE 75
Query: 179 RIKFVLGDGRKGYLDEAPYDIIHVG 203
++ + GD K L+E P + V
Sbjct: 76 NLEIIEGDALKVDLNEFPKQLKVVS 100
>gnl|CDD|223370 COG0293, FtsJ, 23S rRNA methylase [Translation, ribosomal structure
and biogenesis].
Length = 205
Score = 35.3 bits (82), Expect = 0.012
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIE 154
G V+D+G+ G ++ + A +G GK++ ++
Sbjct: 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVD 77
>gnl|CDD|225319 COG2521, COG2521, Predicted archaeal methyltransferase [General
function prediction only].
Length = 287
Score = 35.5 bits (82), Expect = 0.012
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 122 EGKKVLDIGSGNGYFTALLAWCVGKTG--KVIGIEHIPQLVQRATHNVISGNPEFVKDGR 179
G++VLD +G GY A + G VI +E P +++ A N S +
Sbjct: 134 RGERVLDTCTGLGYT----AIEALERGAIHVITVEKDPNVLELAKLNPWSRELF---EIA 186
Query: 180 IKFVLGDGR---KGYLDEAPYDIIH 201
IK +LGD K + DE+ IIH
Sbjct: 187 IKIILGDAYEVVKDFDDESFDAIIH 211
>gnl|CDD|237898 PRK15068, PRK15068, tRNA mo(5)U34 methyltransferase; Provisional.
Length = 322
Score = 34.8 bits (81), Expect = 0.024
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 122 EGKKVLDIGSGNGYF 136
+G+ VLD+G GNGY
Sbjct: 122 KGRTVLDVGCGNGYH 136
>gnl|CDD|227135 COG4798, COG4798, Predicted methyltransferase [General function
prediction only].
Length = 238
Score = 34.0 bits (78), Expect = 0.037
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIG 152
L G V+D+ G GYFT + + VG GKV
Sbjct: 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYA 78
>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis
methyltransferase; Reviewed.
Length = 239
Score = 34.0 bits (79), Expect = 0.037
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 22/73 (30%)
Query: 123 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGN---------PE 173
G KVLD+ G G LA VGKTG+V+G++ S +
Sbjct: 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLD-------------FSEGMLAVGREKLRD 98
Query: 174 FVKDGRIKFVLGD 186
G ++FV GD
Sbjct: 99 LGLSGNVEFVQGD 111
>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 33.8 bits (78), Expect = 0.046
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIK 181
G KVLD+ G G LLA VG TG+V+G++ +++ A + + ++
Sbjct: 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-----VE 104
Query: 182 FVLGD 186
FV+GD
Sbjct: 105 FVVGD 109
>gnl|CDD|201880 pfam01596, Methyltransf_3, O-methyltransferase. Members of this
family are O-methyltransferases. The family includes
catechol o-methyltransferase, caffeoyl-CoA
O-methyltransferase and a family of bacterial
O-methyltransferases that may be involved in antibiotic
production.
Length = 204
Score = 33.5 bits (77), Expect = 0.048
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 13/95 (13%)
Query: 99 YGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQ 158
+ MQ ++ L L + L K+ L+IG GY A + + GK+ + P+
Sbjct: 22 PLSPMQISPEEGQFLSMLLK-LIGAKRTLEIGVFTGYSLLATALALPEDGKITACDIDPE 80
Query: 159 LVQRATHNVISGNPEFVK----DGRIKFVLGDGRK 189
+ F++ +I F LGD
Sbjct: 81 AYEIGL--------PFIQKAGVADKISFRLGDALP 107
>gnl|CDD|222313 pfam13679, Methyltransf_32, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 143
Score = 32.5 bits (75), Expect = 0.059
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 112 VLDDLSEELTEGKKVLDIGSGNGYFT---ALLAWCVGKTGKVIGIEHIPQLVQRA 163
++ ++ ++ T V+D G+G GY L + +V+GI+ +LV++A
Sbjct: 16 LIKEVLDK-TGCITVVDHGAGKGYLGFILYYLLFKRKYGVRVVGIDARAELVEKA 69
>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase
(decarboxylating), CbiT subunit. This model recognizes
the CbiT methylase which is responsible, in part (along
with CbiE), for methylating precorrin-6y (or
cobalt-precorrin-6y) at both the 5 and 15 positions as
well as the concomitant decarbozylation at C-12. In many
organisms, this protein is fused to the CbiE subunit.
The fused protein, when found in organisms catalyzing
the oxidative version of the cobalamin biosynthesis
pathway, is called CobL [Biosynthesis of cofactors,
prosthetic groups, and carriers, Heme, porphyrin, and
cobalamin].
Length = 124
Score = 32.3 bits (74), Expect = 0.061
Identities = 32/105 (30%), Positives = 44/105 (41%), Gaps = 14/105 (13%)
Query: 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS 169
A+ L L L G + DIG+G G T A V G+V IE P+ + ++I
Sbjct: 9 ALTLSKL--RLRPGDVLWDIGAGTGSVTIEAARLVPN-GRVYAIERNPEAL-----DLIE 60
Query: 170 GNPEFVKDGRIKFVLGDGR--KGYLDEAPYDIIHVGGS---IEDI 209
N I V GD L P D + VGGS +++I
Sbjct: 61 RNLRRFGVSNIVIVEGDAPEAPEDLLPDP-DAVFVGGSGGLLQEI 104
>gnl|CDD|236841 PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional.
Length = 272
Score = 33.0 bits (76), Expect = 0.075
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 13/51 (25%)
Query: 103 MQA-----------PFQQAMVLDDLSEELTEG-KKVLDIGSGNGYFTALLA 141
MQA P + A V + L+E L E +LDIG G GY+T LA
Sbjct: 55 MQARRAFLDAGHYQPLRDA-VANLLAERLDEKATALLDIGCGEGYYTHALA 104
>gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase.
Length = 475
Score = 33.2 bits (76), Expect = 0.080
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 17/75 (22%)
Query: 102 HMQAPFQQAMVLDDLSEELT--------------EGKKVLDIGSGNGYFTALLAWCVGKT 147
H +AM+LD + +L EGK VL++G+G G FT LA K
Sbjct: 3 HSVDLTVEAMMLDSKASDLDKEERPEILSLLPPYEGKSVLELGAGIGRFTGELA---KKA 59
Query: 148 GKVIGIEHIPQLVQR 162
G+VI ++ I ++++
Sbjct: 60 GQVIALDFIESVIKK 74
>gnl|CDD|216666 pfam01728, FtsJ, FtsJ-like methyltransferase. This family consists
of FtsJ from various bacterial and archaeal sources FtsJ
is a methyltransferase, but actually has no effect on
cell division. FtsJ's substrate is the 23S rRNA. The 1.5
A crystal structure of FtsJ in complex with its cofactor
S-adenosylmethionine revealed that FtsJ has a
methyltransferase fold. This family also includes the N
terminus of flaviviral NS5 protein. It has been
hypothesised that the N-terminal domain of NS5 is a
methyltransferase involved in viral RNA capping.
Length = 177
Score = 32.6 bits (75), Expect = 0.085
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 13/75 (17%)
Query: 123 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIE----HIPQLVQRATHNVISGNPEFVKD- 177
GK VLD+G+ G F+ +L G GKV+ ++ Q V ++ +PE ++
Sbjct: 23 GKTVLDLGAAPGGFSQVLLERGGA-GKVVAVDLGPMEPIQGVYFLRGDIT--DPETLEKL 79
Query: 178 -----GRIKFVLGDG 187
G++ VL DG
Sbjct: 80 RELLPGKVDLVLSDG 94
>gnl|CDD|129571 TIGR00479, rumA, 23S rRNA (uracil-5-)-methyltransferase RumA. This
protein family was first proposed to be RNA
methyltransferases by homology to the TrmA family. The
member from E. coli has now been shown to act as the 23S
RNA methyltransferase for the conserved U1939. The gene
is now designated rumA and was previously designated
ygcA [Protein synthesis, tRNA and rRNA base
modification].
Length = 431
Score = 32.5 bits (74), Expect = 0.15
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN 166
EL + V+D G G FT LA + V+GIE +P+ V++A N
Sbjct: 289 ELQGEELVVDAYCGVGTFTLPLA---KQAKSVVGIEVVPESVEKAQQN 333
>gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase.
Ribosomal protein L11 methyltransferase is an
S-adenosyl-L-methionine-dependent methyltransferase
required for the modification of ribosomal protein L11.
This protein is found in bacteria and (with a probable
transit peptide) in Arabidopsis [Protein synthesis,
Ribosomal proteins: synthesis and modification].
Length = 288
Score = 32.1 bits (73), Expect = 0.17
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG--KVIGIEHIPQLVQRATHN 166
++ L+ L + + K V+D+G G+G +L+ K G KV+GI+ P V+ A N
Sbjct: 147 SLCLEWLEDLDLKDKNVIDVGCGSG----ILSIAALKLGAAKVVGIDIDPLAVESARKN 201
>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 97
Score = 30.4 bits (69), Expect = 0.19
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 126 VLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLG 185
+LD+G G G LA V G++ + ++ A + P+ ++FV+
Sbjct: 1 ILDLGCGTGRVLRALARAGPS--SVTGVDISKEALELAKERLRDKGPK------VRFVVA 52
Query: 186 DGRKGYLDEAPYDIIHVGG 204
D R +E +D++ G
Sbjct: 53 DARDLPFEEGSFDLVICAG 71
>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function
prediction only].
Length = 248
Score = 31.8 bits (73), Expect = 0.19
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 11/67 (16%)
Query: 123 GKKVLDIGSGNGYFTALLAWCVGKTGK--VIGIEHIPQLVQRATHNV-ISGNPEFVKDGR 179
++LD+G+GNG LLA +T K ++G+E + + A NV ++ E R
Sbjct: 45 KGRILDLGAGNGALGLLLA---QRTEKAKIVGVEIQEEAAEMAQRNVALNPLEE-----R 96
Query: 180 IKFVLGD 186
I+ + D
Sbjct: 97 IQVIEAD 103
>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC. This enzyme,
which is found in biotin biosynthetic gene clusters in
proteobacteria, firmicutes, green-sulfur bacteria,
fusobacterium and bacteroides, is believed to carry out
an enzymatic step prior to the formation of pimeloyl-CoA
(although attribution of this annotation is not
traceable). The enzyme appears related to
methyltransferases by homology [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 240
Score = 31.5 bits (72), Expect = 0.22
Identities = 21/84 (25%), Positives = 29/84 (34%), Gaps = 24/84 (28%)
Query: 124 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHI-------PQLVQRATHNVISGNPEFVK 176
VLDIG G GY T L K L Q T
Sbjct: 36 ASVLDIGCGTGYLTRALL-------KRFPQAEFIANDISAGMLAQAKTKL---------- 78
Query: 177 DGRIKFVLGDGRKGYLDEAPYDII 200
++F+ GD K L+++ +D+I
Sbjct: 79 SENVQFICGDAEKLPLEDSSFDLI 102
>gnl|CDD|128898 smart00650, rADc, Ribosomal RNA adenine dimethylases.
Length = 169
Score = 31.3 bits (72), Expect = 0.23
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 10/71 (14%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 178
L G VL+IG G G T L + +V IE P+L R +F
Sbjct: 10 NLRPGDTVLEIGPGKGALTEELL---ERAKRVTAIEIDPRLAPRLRE-------KFAAAD 59
Query: 179 RIKFVLGDGRK 189
+ + GD K
Sbjct: 60 NLTVIHGDALK 70
>gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase.
Length = 261
Score = 31.4 bits (71), Expect = 0.25
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 123 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKD--GRI 180
G +VLD+ G+G LL+ VG GKV+G++ + + A S K I
Sbjct: 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAA----SRQELKAKSCYKNI 129
Query: 181 KFVLGDGRKGYLDEAPYDIIHVG 203
+++ GD D+ +D I +G
Sbjct: 130 EWIEGDATDLPFDDCYFDAITMG 152
>gnl|CDD|216342 pfam01170, UPF0020, Putative RNA methylase family UPF0020. This
domain is probably a methylase. It is associated with
the THUMP domain that also occurs with RNA modification
domains.
Length = 172
Score = 31.1 bits (71), Expect = 0.27
Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 19/127 (14%)
Query: 87 WRPYANCITNIGYGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGK 146
+RP+ + A ++ +AMV L+ G +LD G+G A
Sbjct: 3 YRPFF-------HPAPLKPTLARAMVN--LAG-WKPGDPLLDPMCGSGTILIEAALMGAN 52
Query: 147 TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSI 206
+ G + ++VQ A N + +I+FV D K L D I +
Sbjct: 53 IAPLYGSDIDWRMVQGARINAENAGVG----DKIEFVQADAAKLPLLNGSVDAI-----V 103
Query: 207 EDIPEGI 213
+ P GI
Sbjct: 104 TNPPYGI 110
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and
metabolism].
Length = 415
Score = 31.5 bits (72), Expect = 0.30
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 2 ALICHIFWLAFGHLATGQEIFG--INNKPNN 30
AL+ +I F G +FG + K N
Sbjct: 238 ALVLYILVGFFVFGCFGSLVFGNILAAKEQN 268
>gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function
prediction only].
Length = 218
Score = 30.9 bits (70), Expect = 0.34
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG--KVIGIEHIPQLVQRATHNV 167
A +DD E GK+VLD+G+G+G L+A + G +V+ + P L Q N
Sbjct: 68 ARYIDD-HPETVRGKRVLDLGAGSG----LVAIAAARAGAAEVVAADIDPWLEQAIRLNA 122
>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 98
Score = 29.3 bits (66), Expect = 0.49
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 127 LDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGD 186
LDIG G G L + G++ P ++ A + + R++ + D
Sbjct: 1 LDIGCGTGTLLRALLEA-LPGLEYTGVDISPAALEAAAERLAALGLLDAV--RVRLDVLD 57
Query: 187 GRKGYLDEAPYDIIHVGGSIEDIPE 211
LD +D++ + + +
Sbjct: 58 A--IDLDPGSFDVVVASNVLHHLAD 80
>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation,
ribosomal structure and biogenesis].
Length = 300
Score = 30.3 bits (69), Expect = 0.68
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 11/93 (11%)
Query: 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG--KVIGIEHIPQLVQRATHNV 167
++ L+ L + L +GK VLD+G G+G +LA K G KV+G++ PQ V+ A N
Sbjct: 150 SLCLEALEKLLKKGKTVLDVGCGSG----ILAIAAAKLGAKKVVGVDIDPQAVEAAREN- 204
Query: 168 ISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 200
N V+ ++ + + P+D+I
Sbjct: 205 ARLN--GVEL-LVQAKGFLLLEV-PENGPFDVI 233
>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal
structure and biogenesis].
Length = 198
Score = 29.6 bits (67), Expect = 0.84
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 14/71 (19%)
Query: 122 EGKKVLDIGSGNGYFT---ALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 178
EGK VLD+G+G G ALL +V+ ++ P+ ++ A N G
Sbjct: 45 EGKTVLDLGAGTGILAIGAALLGAS-----RVLAVDIDPEALEIARANAEEL------LG 93
Query: 179 RIKFVLGDGRK 189
++FV+ D
Sbjct: 94 DVEFVVADVSD 104
>gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase. This
model represents an O-methyltransferase believed to act
at two points in the ubiquinone biosynthetic pathway in
bacteria (UbiG) and fungi (COQ3). A separate methylase
(MenG/UbiE) catalyzes the single C-methylation step. The
most commonly used names for genes in this family do not
indicate whether this gene is an O-methyl, or C-methyl
transferase [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 224
Score = 29.2 bits (66), Expect = 1.2
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 122 EGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRAT 164
G +VLD+G G G LL+ + + G V GI+ + ++ A
Sbjct: 45 FGLRVLDVGCGGG----LLSEPLARLGANVTGIDASEENIEVAK 84
>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related
methyltransferases [Cell envelope biogenesis, outer
membrane].
Length = 283
Score = 29.5 bits (67), Expect = 1.2
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGI 153
L G +LDIG G G A G V+G+
Sbjct: 70 LKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGV 101
>gnl|CDD|129628 TIGR00537, hemK_rel_arch, HemK-related putative methylase. The
gene hemK from E. coli was found to contribute to heme
biosynthesis and originally suggested to be
protoporphyrinogen oxidase (Medline 95189105).
Functional analysis of the nearest homolog in
Saccharomyces cerevisiae, YNL063w, finds it is not
protoporphyrinogen oxidase and sequence analysis
suggests that HemK homologs have
S-adenosyl-methionine-dependent methyltransferase
activity (Medline 99237242). Homologs are found, usually
in a single copy, in nearly all completed genomes, but
varying somewhat in apparent domain architecture. This
model represents an archaeal and eukaryotic protein
family that lacks an N-terminal domain found in HemK and
its eubacterial homologs. It is found in a single copy
in the first six completed archaeal and eukaryotic
genomes [Unknown function, Enzymes of unknown
specificity].
Length = 179
Score = 29.1 bits (65), Expect = 1.3
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 12/95 (12%)
Query: 106 PFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATH 165
P + +++L+ EL + VL+IG+G G L GK ++ + P V+
Sbjct: 4 PAEDSLLLEANLREL-KPDDVLEIGAGTGLVAIRLK---GKGKCILTTDINPFAVKELRE 59
Query: 166 NVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 200
N N + V+ D KG +D+I
Sbjct: 60 NAKLNNVG------LDVVMTDLFKGV--RGKFDVI 86
>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase,
release factor-specific. Members of this protein family
are HemK (PrmC), a protein once thought to be involved
in heme biosynthesis but now recognized to be a
protein-glutamine methyltransferase that modifies the
peptide chain release factors. All members of the seed
alignment are encoded next to the release factor 1 gene
(prfA) and confirmed by phylogenetic analysis. SIMBAL
analysis (manuscript in prep.) shows the motif
[LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers
specificity for the release factors rather than for
ribosomal protein L3 [Protein fate, Protein modification
and repair].
Length = 251
Score = 29.0 bits (66), Expect = 1.5
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 9/86 (10%)
Query: 116 LSEELTEGKKVLDIGSGNGYFT-ALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEF 174
L +VLD+G+G+G AL +V ++ P+ + A N +
Sbjct: 81 LERLKKGPLRVLDLGTGSGAIALALAKER--PDARVTAVDISPEALAVARKNAARLGLD- 137
Query: 175 VKDGRIKFVLGDGRKGYLDEAPYDII 200
++F+ D + L +D+I
Sbjct: 138 ----NVEFLQSDWFEP-LPGGKFDLI 158
>gnl|CDD|173788 cd04056, Peptidases_S53, Peptidase domain in the S53 family.
Members of the peptidases S53 (sedolisin) family
include endopeptidases and exopeptidases sedolisin,
kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl
Proteinase. The S53 family contains a catalytic triad
Glu/Asp/Ser with an additional acidic residue Asp in
the oxyanion hole, similar to that of Asn in
subtilisin. The stability of these enzymes may be
enhanced by calcium, some members have been shown to
bind up to 4 ions via binding sites with different
affinity. Some members of this clan contain disulfide
bonds. These enzymes can be intra- and extracellular,
some function at extreme temperatures and pH values.
Characterized sedolisins include Kumamolisin, an
extracellular calcium-dependent thermostable
endopeptidase from Bacillus. The enzyme is synthesized
with a 188 amino acid N-terminal preprotein region
which is cleaved after the extraction into the
extracellular space with low pH. One kumamolysin
paralog, kumamolisin-As, is believed to be a
collagenase. TPP1 is a serine protease that functions
as a tripeptidyl exopeptidase as well as an
endopeptidase. Less is known about PSCP from
Pseudomonas which is thought to be an aspartic
proteinase.
Length = 361
Score = 29.2 bits (66), Expect = 1.5
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 8/43 (18%)
Query: 8 FWLAFGHLATGQEIFGINNKPNNY--------ENNLDVQVCMG 42
F+ FG A I + N E +LDV+
Sbjct: 43 FFQLFGLPAPTVFIVVVIGGGNAPGTSSGWGGEASLDVEYAGA 85
>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA).
This family consists of several Ribosomal protein L11
methyltransferase (EC:2.1.1.-) sequences.
Length = 294
Score = 28.8 bits (65), Expect = 1.8
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 14/93 (15%)
Query: 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG--KVIGIEHIPQLVQRATHNV 167
A+ L+ L + G+ VLD+G G+G +LA K G KV+G++ P V+ A N
Sbjct: 148 ALCLEALESLVKPGETVLDVGCGSG----ILAIAALKLGAKKVVGVDIDPVAVRAAKEN- 202
Query: 168 ISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 200
N V+ ++ GD +G D++
Sbjct: 203 AELNG--VEAQLEVYLPGDLPEG-----KADVV 228
>gnl|CDD|184509 PRK14103, PRK14103, trans-aconitate 2-methyltransferase;
Provisional.
Length = 255
Score = 28.9 bits (65), Expect = 1.9
Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 18/92 (19%)
Query: 122 EGKKVLDIGSGNGYFTALLA--WCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR 179
++V+D+G G G T LA W + ++ P++V A ++
Sbjct: 29 RARRVVDLGCGPGNLTRYLARRW---PGAVIEALDSSPEMVAAA------------RERG 73
Query: 180 IKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
+ GD R + + D++ +++ +PE
Sbjct: 74 VDARTGDVR-DWKPKPDTDVVVSNAALQWVPE 104
>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis
methyltransferases. This model represents a family of
methyltransferases involved in the biosynthesis of
menaquinone and ubiqinone. Some members such as the UbiE
enzyme from E. coli are believed to act in both
pathways, while others may act in only the menaquinone
pathway. These methyltransferases are members of the
UbiE/CoQ family of methyltransferases (pfam01209) which
also contains ubiquinone methyltransferases and other
methyltransferases. Members of this clade include a wide
distribution of bacteria and eukaryotes, but no archaea.
An outgroup for this clade is provided by the
phosphatidylethanolamine methyltransferase (EC 2.1.1.17)
from Rhodobacter sphaeroides. Note that a number of
non-orthologous genes which are members of pfam03737
have been erroneously annotated as MenG
methyltransferases [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 223
Score = 28.8 bits (65), Expect = 2.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 123 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGI 153
G+KVLD+ G G LA GKV G+
Sbjct: 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGV 70
>gnl|CDD|219269 pfam07021, MetW, Methionine biosynthesis protein MetW. This family
consists of several bacterial and one archaeal
methionine biosynthesis MetW proteins. Biosynthesis of
methionine from homoserine in Pseudomonas putida takes
place in three steps. The first step is the acylation of
homoserine to yield an acyl-L-homoserine. This reaction
is catalyzed by the products of the metXW genes and is
equivalent to the first step in enterobacteria,
gram-positive bacteria and fungi, except that in these
microorganisms the reaction is catalyzed by a single
polypeptide (the product of the metA gene in Escherichia
coli and the met5 gene product in Neurospora crassa). In
Pseudomonas putida, as in gram-positive bacteria and
certain fungi, the second and third steps are a direct
sulfhydrylation that converts the O-acyl-L-homoserine
into homocysteine and further methylation to yield
methionine. The latter reaction can be mediated by
either of the two methionine synthetases present in the
cells.
Length = 193
Score = 28.5 bits (64), Expect = 2.0
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 123 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIE----HIPQLVQRATHNVISGNPE 173
G +VLD+G G+G LL G+ GIE + + V + VI G+ +
Sbjct: 14 GSRVLDLGCGDGSLLYLLQEEKQVDGR--GIELDAAGVAECVAKGLS-VIQGDAD 65
>gnl|CDD|176209 cd08247, AST1_like, AST1 is a cytoplasmic protein associated with
the periplasmic membrane in yeast. This group contains
members identified in targeting of yeast membrane
proteins ATPase. AST1 is a cytoplasmic protein
associated with the periplasmic membrane in yeast,
identified as a multicopy suppressor of pma1 mutants
which cause temperature sensitive growth arrest due to
the inability of ATPase to target to the cell surface.
This family is homologous to the medium chain family of
dehydrogenases and reductases. Medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of an
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES.
Length = 352
Score = 28.8 bits (65), Expect = 2.4
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 14/102 (13%)
Query: 112 VLDDLSEELTEGKKVLDIGSGN--GYFTALLAWCVGKTGKVIGI--EHIPQLVQRATHNV 167
+L+DL ++L KVL +G G F LA G V+G +L ++
Sbjct: 141 ILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTCSSRSAELNKK----- 195
Query: 168 ISGNPEFV--KDGRIKFVLGDGRKGYLDEAPYDII--HVGGS 205
G F+ +L + + +D+I VGG
Sbjct: 196 -LGADHFIDYDAHSGVKLLKPVLENVKGQGKFDLILDCVGGY 236
>gnl|CDD|201699 pfam01269, Fibrillarin, Fibrillarin.
Length = 229
Score = 28.3 bits (64), Expect = 2.4
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIP----QLVQRATH--NVI 168
G KVL +G+ +G + ++ VG G V +E P +L+ A N++
Sbjct: 73 PGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRELINMAKKRPNIV 125
>gnl|CDD|223109 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation)
[Translation, ribosomal structure and biogenesis].
Length = 259
Score = 28.3 bits (64), Expect = 2.7
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 10/71 (14%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 178
++ G VL+IG G G T L + + +V IE +L + F
Sbjct: 27 NISPGDNVLEIGPGLGALTEPL---LERAARVTAIEIDRRLAEVLKE-------RFAPYD 76
Query: 179 RIKFVLGDGRK 189
+ + GD K
Sbjct: 77 NLTVINGDALK 87
>gnl|CDD|236059 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase;
Validated.
Length = 230
Score = 28.3 bits (64), Expect = 2.7
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 14/67 (20%)
Query: 113 LDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLV----QRATHNV 167
DL+ G ++LD G G G + LA + G KV+ + PQ+V +RA
Sbjct: 59 DGDLT-----GLRILDAGCGVGSLSIPLA----RRGAKVVASDISPQMVEEARERAPEAG 109
Query: 168 ISGNPEF 174
++GN F
Sbjct: 110 LAGNITF 116
>gnl|CDD|202251 pfam02475, Met_10, Met-10+ like-protein. The methionine-10 mutant
allele of N. crassa codes for a protein of unknown
function. However, homologous proteins have been found
in yeast suggesting this protein may be involved in
methionine biosynthesis, transport and/or utilisation.
Length = 199
Score = 28.1 bits (63), Expect = 3.0
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIK 181
EG+ V+D+ +G G F+ +A K +V +E P+ V+ N+ E G I
Sbjct: 100 EGEVVVDMFAGIGPFSIPIA-KHSKAKRVYAVELNPEAVKYLKENIKLNKVE----GVIS 154
Query: 182 FVLGDGRK 189
+LGD R
Sbjct: 155 PILGDVRD 162
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 28.1 bits (63), Expect = 3.6
Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 14/125 (11%)
Query: 100 GAHMQAPFQQAMVLDDLSEELTEGKKVLDIG-SGNGYFTAL----LAWCVGKTGKV---- 150
P QQ L + + L +G+KV +G SG+G T L AW + G +
Sbjct: 341 NVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQ-GSITLNG 399
Query: 151 IGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIH-VGGS--IE 207
+ I + + R T +V++ G ++ L DE + + VG +E
Sbjct: 400 VEIASLDEQALRETISVLTQRVHLF-SGTLRDNLRLANPDASDEELWAALQQVGLEKLLE 458
Query: 208 DIPEG 212
P+G
Sbjct: 459 SAPDG 463
>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors
[Translation, ribosomal structure and biogenesis].
Length = 280
Score = 27.7 bits (62), Expect = 4.3
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 12/87 (13%)
Query: 116 LSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFV 175
L+ L K++LD+G+G+G LA G +VI ++ P + A N
Sbjct: 104 LALLLQLDKRILDLGTGSGAIAIALA-KEGPDAEVIAVDISPDALALARENAERNGLV-- 160
Query: 176 KDGRIKFVLGDGRKGYLDEAP--YDII 200
R+ V D + +D+I
Sbjct: 161 ---RVLVVQSD----LFEPLRGKFDLI 180
>gnl|CDD|233713 TIGR02081, metW, methionine biosynthesis protein MetW. This
protein is found alongside MetX, of the enzyme that
acylates homoserine as a first step toward methionine
biosynthesis, in many species. It appears to act in
methionine biosynthesis but is not fully characterized
[Amino acid biosynthesis, Aspartate family].
Length = 194
Score = 27.3 bits (61), Expect = 4.8
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGI--EHIPQLVQRATHNVISGNPE 173
G +VLD+G G+G ALL G I I + + V R NVI G+ +
Sbjct: 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGV-NVIQGDLD 65
>gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal
structure and biogenesis].
Length = 300
Score = 27.6 bits (62), Expect = 5.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 122 EGKKVLDIGSGNGYFTALLA 141
G KVLD+G G G +LA
Sbjct: 158 LGGKVLDLGCGYGVLGLVLA 177
>gnl|CDD|181354 PRK08287, PRK08287, cobalt-precorrin-6Y C(15)-methyltransferase;
Validated.
Length = 187
Score = 27.3 bits (61), Expect = 5.1
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 20/101 (19%)
Query: 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS 169
A+ L L EL K ++D+G+G G ++ A + +V IE P +
Sbjct: 21 ALALSKL--ELHRAKHLIDVGAGTGS-VSIEAALQFPSLQVTAIERNPDAL--------- 68
Query: 170 GNPEFVKDGRIKFVLGDGR--KGYLD---EAPYDIIHVGGS 205
+K+ R +F G+ G D I +GGS
Sbjct: 69 ---RLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGS 106
>gnl|CDD|211555 TIGR00138, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase
GidB. GidB (glucose-inhibited division protein B)
appears to be present and in a single copy in nearly all
complete eubacterial genomes. It is missing only from
some obligate intracellular species of various lineages
(Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera,
etc.). GidB shows a methytransferase fold in its the
crystal structure, and acts as a 7-methylguanosine
(m(7)G) methyltransferase, apparently specific to 16S
rRNA [Protein synthesis, tRNA and rRNA base
modification].
Length = 181
Score = 27.2 bits (61), Expect = 5.4
Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 112 VLDDLS-EELTEGKKVLDIGSGNG 134
+LD L+ E +GK+V+DIGSG G
Sbjct: 31 ILDSLALLEYLDGKRVIDIGSGAG 54
>gnl|CDD|240367 PTZ00338, PTZ00338, dimethyladenosine transferase-like protein;
Provisional.
Length = 294
Score = 27.3 bits (61), Expect = 6.4
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 126 VLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLV 160
VL+IG G G T L + KVI IE P++V
Sbjct: 40 VLEIGPGTGNLTEKL---LQLAKKVIAIEIDPRMV 71
>gnl|CDD|223434 COG0357, GidB, Predicted S-adenosylmethionine-dependent
methyltransferase involved in bacterial cell division
[Cell envelope biogenesis, outer membrane].
Length = 215
Score = 26.9 bits (60), Expect = 6.5
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 122 EGKKVLDIGSGNG 134
+ K+VLDIGSG G
Sbjct: 67 KAKRVLDIGSGAG 79
>gnl|CDD|149213 pfam08003, Methyltransf_9, Protein of unknown function (DUF1698).
This family contains many hypothetical proteins. It also
includes two putative methyltransferase proteins.
Length = 315
Score = 27.4 bits (61), Expect = 6.8
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 123 GKKVLDIGSGNGY 135
G+ +LD+G GNGY
Sbjct: 116 GRTILDVGCGNGY 128
>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain. This domain is
found in ribosomal RNA small subunit methyltransferase C
as well as other methyltransferases .
Length = 170
Score = 26.8 bits (60), Expect = 7.1
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 123 GKKVLDIGSGNGYFTALLA 141
G KVLD+G G G A LA
Sbjct: 32 GGKVLDLGCGYGVLGAALA 50
>gnl|CDD|221318 pfam11925, DUF3443, Protein of unknown function (DUF3443). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria. Proteins in this
family are typically between 400 to 434 amino acids in
length. This protein has two conserved sequence motifs:
NPV and DNNG.
Length = 369
Score = 27.3 bits (61), Expect = 7.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 16 ATGQEIFGINNKPNN 30
ATG IFGI + NN
Sbjct: 216 ATGSLIFGIGTQSNN 230
>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed.
Length = 250
Score = 27.0 bits (61), Expect = 7.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 110 AMVLDDLSEELTEGKKVLDIGSGNG 134
+ L+ L + + GK VLD+G G+G
Sbjct: 107 RLCLEALEKLVLPGKTVLDVGCGSG 131
>gnl|CDD|232976 TIGR00438, rrmJ, cell division protein FtsJ. Methylates the 23S
rRNA. Previously known as cell division protein ftsJ.//
Trusted cutoff too high? [SS 10/1/04] [Protein
synthesis, tRNA and rRNA base modification].
Length = 188
Score = 26.7 bits (59), Expect = 7.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIP 157
G VLD+G+ G ++ + VG G+VI ++ P
Sbjct: 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQP 67
>gnl|CDD|130994 TIGR01939, nqrD, NADH:ubiquinone oxidoreductase,
Na(+)-translocating, D subunit. This model represents
the NqrD subunit of the six-protein, Na(+)-pumping
NADH-quinone reductase of a number of marine and
pathogenic Gram-negative bacteria. This oxidoreductase
complex functions primarily as a sodium ion pump
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 207
Score = 27.0 bits (60), Expect = 7.4
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 8/43 (18%)
Query: 129 IGSGNGYFTALLAWCVG------KTGKVIGIEHIPQLVQRATH 165
IG+G GY L+ +G +G ++GI IP+L
Sbjct: 134 IGNGLGYGWVLV--IIGFFRELFGSGTLLGIRVIPKLYYSGGW 174
>gnl|CDD|239058 cd02144, iodotyrosine_dehalogenase, Iodotyrosine dehalogenase
catalyzes the removal of iodine from the 3, 5 positions
of L-tyosine in thyroid, liver and kidney, using NADPH
as electron donor. This enzyme is a homolog of the
nitroreductase family. These enzymes are usually
homodimers.
Length = 193
Score = 26.6 bits (59), Expect = 8.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 188 RKGYLDEAPYDIIHVGGSIEDIPEG 212
RK YLDEAPY I+ +P+G
Sbjct: 89 RKPYLDEAPYLILVFKQKYGGLPDG 113
>gnl|CDD|129544 TIGR00452, TIGR00452, tRNA (mo5U34)-methyltransferase. This model
describes a set of proteins with homology in its central
region to a large number of methyltransferases active on
a variety of substrates. The similarity includes a motif
resembling ILDVGCG[SG]G. Known examples to date are
restricted to the proteobacteria [Unknown function,
Enzymes of unknown specificity].
Length = 314
Score = 26.8 bits (59), Expect = 9.7
Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 99 YGAHMQAPFQQAMVLDDLSEELT--EGKKVLDIGSGNGYF 136
G + + ++ + D + L+ +G+ +LD+G G+GY
Sbjct: 96 SGIKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYH 135
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.140 0.435
Gapped
Lambda K H
0.267 0.0829 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,339,874
Number of extensions: 1063902
Number of successful extensions: 1073
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1045
Number of HSP's successfully gapped: 104
Length of query: 213
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 120
Effective length of database: 6,812,680
Effective search space: 817521600
Effective search space used: 817521600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.5 bits)