RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7826
(213 letters)
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl
homocysteine, protein repair; HET: SAH; 1.50A {Homo
sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Length = 226
Score = 166 bits (424), Expect = 2e-52
Identities = 68/155 (43%), Positives = 99/155 (63%)
Query: 57 LVEHLKETLFIESELPYKAMLAVDRGHYTTWRPYANCITNIGYGAHMQAPFQQAMVLDDL 116
L+ +L++ I+++ ++ MLA DR HY PY + +IG+ A + AP A L+ L
Sbjct: 12 LIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAPHMHAYALELL 71
Query: 117 SEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVK 176
++L EG K LD+GSG+G TA A VG TGKVIGI+HI +LV + +NV +P +
Sbjct: 72 FDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLS 131
Query: 177 DGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
GR++ V+GDGR GY +EAPYD IHVG + +P+
Sbjct: 132 SGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQ 166
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
methyltransferase, isomerization, protein repair,
S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
melanogaster} SCOP: c.66.1.7
Length = 227
Score = 158 bits (401), Expect = 7e-49
Identities = 59/160 (36%), Positives = 87/160 (54%), Gaps = 5/160 (3%)
Query: 57 LVEHLKETLFIESELPYKAMLAVDRGHYTTWRPYANCITNIGYGAHMQAPFQQAMVLDDL 116
L+ LK+ I S+ +AM DR HY+ PY + IG G + AP A L+ L
Sbjct: 19 LIRQLKDHGVIASDAVAQAMKETDRKHYSPRNPYMDAPQPIGGGVTISAPHMHAFALEYL 78
Query: 117 SEELTEGKKVLDIGSGNGYFTALLAWCVGKTG-----KVIGIEHIPQLVQRATHNVISGN 171
+ L G ++LD+GSG+GY TA + G +++GIEH +LV+R+ N+ + +
Sbjct: 79 RDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDD 138
Query: 172 PEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
+ G++ V GDGRKGY APY+ IHVG + D P
Sbjct: 139 RSMLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPT 178
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A
methyltransferase; protein repair, isoaspartyl
formation, P. falciparum; HET: SAH; 2.00A {Plasmodium
falciparum}
Length = 227
Score = 149 bits (378), Expect = 3e-45
Identities = 52/163 (31%), Positives = 78/163 (47%), Gaps = 8/163 (4%)
Query: 57 LVEHLKETLFIESELPYKAMLAVDRGHYTTWRPYANCITNIGYGAHMQAPFQQAMVLDDL 116
L+E+LK I+ + Y ML VDRG Y PY + I +G + AP A+ L L
Sbjct: 15 LLENLKRRGIIDDDDVYNTMLQVDRGKYIKEIPYIDTPVYISHGVTISAPHMHALSLKRL 74
Query: 117 SEELTEGKKVLDIGSGNGYFTALLAWCV----GKTGKVIGIEHIPQLVQRATHNVISGNP 172
L G + +D+GSG+GY T +A + K VIG+E + LV + N+ P
Sbjct: 75 INVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKP 134
Query: 173 EFVKDGRIKFVLGD----GRKGYLDEAPYDIIHVGGSIEDIPE 211
E +K K + + + + +D IHVG S ++PE
Sbjct: 135 ELLKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASELPE 177
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 141 bits (357), Expect = 3e-42
Identities = 51/159 (32%), Positives = 78/159 (49%), Gaps = 11/159 (6%)
Query: 57 LVEHLKETLFIESELPYKAMLAVDRGHY----TTWRPYANCITNIGYGAHMQAPFQQAMV 112
++E L +I+S+ A+L V R + Y + IGYG + A M+
Sbjct: 10 VIEKLIREGYIKSKRVIDALLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIHMVGMM 69
Query: 113 LDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNP 172
+ L +L G KVL+IG+G GY A+ A VG+ G V+ IE IP+L ++A +
Sbjct: 70 CELL--DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTL----- 122
Query: 173 EFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
+ + ++GDG GY APYD I+ + IPE
Sbjct: 123 RKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIPE 161
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann
methyltransferase, protein repair isomerization; HET:
SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB:
1jg2_A* 1jg3_A* 1jg4_A*
Length = 235
Score = 135 bits (342), Expect = 9e-40
Identities = 49/159 (30%), Positives = 73/159 (45%), Gaps = 13/159 (8%)
Query: 57 LVEHLKETLFIESELPYKAMLAVDRGHY----TTWRPYANCITNIGYGAHMQAPFQQAMV 112
VE LK I S+ +A L R + + I G + AP A++
Sbjct: 24 TVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIM 83
Query: 113 LDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNP 172
L+ L G +L++G+G+G+ AL++ V V IE IP+LV+ A N+
Sbjct: 84 LEIA--NLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNL----- 134
Query: 173 EFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
E + +LGDG KG+ +APYD+I V IPE
Sbjct: 135 ERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPE 173
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 125 bits (315), Expect = 7e-36
Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 18/151 (11%)
Query: 67 IESELPYKAMLAVDRGHY----TTWRPYANCITN--IGYGAHMQAPFQQAMVLDDLSEEL 120
I+++ +A VDR + YA+ I G + A +LD+L +L
Sbjct: 11 IKTQELAEAFNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNLGIFMLDEL--DL 68
Query: 121 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRI 180
+G+KVL+IG+G GY+TAL+A V K V+ +E ++ A+ I
Sbjct: 69 HKGQKVLEIGTGIGYYTALIAEIVDK---VVSVEINEKMYNYASKL-------LSYYNNI 118
Query: 181 KFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
K +LGDG GY +E PYD + V + +
Sbjct: 119 KLILGDGTLGYEEEKPYDRVVVWATAPTLLC 149
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type
fold, S-adenosyl-L- methionine; HET: SAH; 1.80A
{Escherichia coli}
Length = 210
Score = 116 bits (294), Expect = 6e-33
Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 15/167 (8%)
Query: 49 MEKKPMEYLVEHLKETLFIESELPYKAMLAVDRGHY--TTWRP--YANCITNIGYGAHMQ 104
M + ++ L++ L+ I+ E A+ AV R + + + N IG G +
Sbjct: 3 MVSRRVQALLDQLRA-QGIQDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQTIS 61
Query: 105 APFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRAT 164
P+ A + + L ELT +VL+IG+G+GY TA+LA V V +E I L +A
Sbjct: 62 QPYMVARMTELL--ELTPQSRVLEIGTGSGYQTAILAHLVQH---VCSVERIKGLQWQAR 116
Query: 165 HNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
+ + + + GDG +G+ AP+D I V + +IP
Sbjct: 117 RRL-----KNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPT 158
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 119 bits (299), Expect = 9e-33
Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 16/147 (10%)
Query: 74 KAMLAVDRGH-----YTTWRPYANC----ITNIGYGAHMQAPFQQAMVLDDLSEELTEGK 124
KA L + R Y Y + + + P A+ ++ + L +G
Sbjct: 20 KAFLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWV--GLDKGM 77
Query: 125 KVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVL 184
+VL+IG G GY A+++ VG+ G V+ +E+ ++ + A NV E + + FV
Sbjct: 78 RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNV-----ERLGIENVIFVC 132
Query: 185 GDGRKGYLDEAPYDIIHVGGSIEDIPE 211
GDG G + +PYD+I V ++++PE
Sbjct: 133 GDGYYGVPEFSPYDVIFVTVGVDEVPE 159
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 61.1 bits (148), Expect = 2e-11
Identities = 30/123 (24%), Positives = 46/123 (37%), Gaps = 8/123 (6%)
Query: 90 YANCITNIGYGAHMQAPFQQAMVLDDLS--EELTEGKKVLDIGSGNGYFTALLAWCVGKT 147
N I + Q P + L LS + LTE + DIG G G T +LA V
Sbjct: 12 ELNLICDFFSNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVT-- 69
Query: 148 GKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIE 207
G+V G++ + + N R+ ++G D+I G+I
Sbjct: 70 GQVTGLDFLSGFIDIFNRNARQSGL----QNRVTGIVGSMDDLPFRNEELDLIWSEGAIY 125
Query: 208 DIP 210
+I
Sbjct: 126 NIG 128
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 59.7 bits (145), Expect = 3e-11
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR 179
L EG VLD+G+G G++ L+ VG+ GKV I+ ++V A V +
Sbjct: 35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-----N 89
Query: 180 IKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
++ + + K L + D I + + ++ E
Sbjct: 90 VEVLKSEENKIPLPDNTVDFIFMAFTFHELSE 121
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI,
tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Length = 258
Score = 60.1 bits (145), Expect = 3e-11
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 94 ITNIGYGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGI 153
+ ++ A P + ++ L +L G +VL+ G+G+G T LA VG+ G V
Sbjct: 70 LLHMKRSATPTYPKDASAMVTLL--DLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESY 127
Query: 154 EHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHV 202
E P + +A NV F + ++F LG + L+EA YD + +
Sbjct: 128 EARPHHLAQAERNV----RAFWQVENVRFHLGKLEEAELEEAAYDGVAL 172
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 59.9 bits (145), Expect = 3e-11
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 115 DLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEF 174
ELT+ K+ DIG G G T LA V G++ GI+ P ++ N + N
Sbjct: 39 SFINELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANC-- 94
Query: 175 VKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIP 210
R+K + G D+I G+I +I
Sbjct: 95 --ADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIG 128
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 59.2 bits (143), Expect = 8e-11
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 9/94 (9%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 178
++T+ ++D G G GY +L + + K GI+ L+ A
Sbjct: 19 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY------ 72
Query: 179 RIKFVLGDGRKGYLD-EAPYDIIHVGGSIEDIPE 211
+F+ GD + ++ YDI + +
Sbjct: 73 DSEFLEGDATE--IELNDKYDIAICHAFLLHMTT 104
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 58.9 bits (142), Expect = 1e-10
Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 7/97 (7%)
Query: 116 LSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFV 175
L L G V + G L + +++GI++ P+ + AT
Sbjct: 112 LQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHAL--- 168
Query: 176 KDGRIKFVLGDGRKGYLD-EAPYDIIHVGGSIEDIPE 211
G+I D K LD YD++ G P+
Sbjct: 169 -AGQITLHRQDAWK--LDTREGYDLLTSNGLNIYEPD 202
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 58.7 bits (141), Expect = 1e-10
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 10/91 (10%)
Query: 119 ELTEGKKVLDIGSGNGYFTA-LLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKD 177
G++ + IG G T LL+ G +V +E P + + + + +
Sbjct: 119 RFRRGERAVFIGGGPLPLTGILLSHVYG--MRVNVVEIEPDIAELSRKVIEGLGVD---- 172
Query: 178 GRIKFVLGDGRKGYLDEAPYDIIHVGGSIED 208
+ + GD +D +D++ V E
Sbjct: 173 -GVNVITGDETV--IDGLEFDVLMVAALAEP 200
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 57.2 bits (138), Expect = 2e-10
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 116 LSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFV 175
+ + EG V+D GNG TA LA VG+ G+V G + + + T + +
Sbjct: 16 IKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKL----TDLN 71
Query: 176 KDGRIKFVLGD 186
R+ +
Sbjct: 72 LIDRVTLIKDG 82
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 57.7 bits (139), Expect = 2e-10
Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 6/118 (5%)
Query: 94 ITNIGYGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGI 153
+ + G + P A+++ ++ G +++ G G+G T LA VG G+V+
Sbjct: 67 LDKMKRGPQIVHPKDAALIVAYA--GISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSY 124
Query: 154 EHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
E + A N+ D R+ L D +G +E +I E + E
Sbjct: 125 EIREDFAKLAWENI----KWAGFDDRVTIKLKDIYEGIEEENVDHVILDLPQPERVVE 178
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 56.6 bits (136), Expect = 6e-10
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Query: 90 YANCITNIGYGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGK 149
+ I N+ + P + + L ++ EG +++D G G+G A+LA VG +GK
Sbjct: 82 LIDEIMNMKRRTQIVYPKDSSFIAMML--DVKEGDRIIDTGVGSGAMCAVLARAVGSSGK 139
Query: 150 VIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVG 203
V E + + A N+ ++ R+ + D +G DE D + +
Sbjct: 140 VFAYEKREEFAKLAESNL----TKWGLIERVTIKVRDISEG-FDEKDVDALFLD 188
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 56.6 bits (136), Expect = 8e-10
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 178
EG VLD+G G G L + VG+ GKVIG++ + ++ A V +F
Sbjct: 80 GSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSP 139
Query: 179 ---RIKFVLGD 186
++F+ G
Sbjct: 140 SRSNVRFLKGF 150
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 54.1 bits (130), Expect = 4e-09
Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR 179
G KVL+ G G G T +LA ++ I+ P+ +++A N +
Sbjct: 35 YPPGAKVLEAGCGIGAQTVILA-KNNPDAEITSIDISPESLEKARENTEKNGIK-----N 88
Query: 180 IKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
+KF+ + +++ +D I V +E +
Sbjct: 89 VKFLQANIFSLPFEDSSFDHIFVCFVLEHLQS 120
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 52.6 bits (126), Expect = 1e-08
Identities = 20/113 (17%), Positives = 44/113 (38%), Gaps = 11/113 (9%)
Query: 99 YGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQ 158
M ++ ++ + + + +VLD+G G+GY T L+ K +G++
Sbjct: 30 NSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLS---RTGYKAVGVDISEV 86
Query: 159 LVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
++Q+ + + F+ GD + ++ I S+E E
Sbjct: 87 MIQKGKER--------GEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEE 131
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 52.5 bits (125), Expect = 2e-08
Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 12/131 (9%)
Query: 83 HYTTWRP-YANCITNIGYGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLA 141
Y RP + + + G + P M+L + ++ G VL+ GSG+G + L+
Sbjct: 67 QYMLRRPALEDYVVLMKRGTAITFPKDINMILSMM--DINPGDTVLEAGSGSGGMSLFLS 124
Query: 142 WCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIH 201
VG G+VI E A N + + D +
Sbjct: 125 KAVGSQGRVISFEVRKDHHDLAKKNY---------KHWRDSWKLSHVEEWPDNVDFIHKD 175
Query: 202 VGGSIEDIPEG 212
+ G+ EDI
Sbjct: 176 ISGATEDIKSL 186
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 52.4 bits (125), Expect = 2e-08
Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 178
L G +L++G G+G ++ + + + G + +E +++A N+ EF G
Sbjct: 107 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNL----SEFYDIG 162
Query: 179 RIKFVLGDGRKGYLDE 194
++ D D+
Sbjct: 163 NVRTSRSDIADFISDQ 178
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 51.4 bits (123), Expect = 3e-08
Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 15/104 (14%)
Query: 99 YGAHMQAPFQQAMVLDDLSE-ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIP 157
Y + D L++ L D+G G G T LL G + GI+
Sbjct: 11 YLKF--EDERTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGV-NVITGIDSDD 67
Query: 158 QLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIH 201
++++A + F D + D+++
Sbjct: 68 DMLEKAAD----------RLPNTNFGKADLAT-WKPAQKADLLY 100
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 50.6 bits (121), Expect = 4e-08
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 113 LDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNP 172
L+ ++ +++G +LD+GS + Y L G+ I E + Q A NV +
Sbjct: 6 LELVASFVSQGAILLDVGSDHAYLPIELV-ERGQIKSAIAGEVVEGPYQSAVKNVEAHGL 64
Query: 173 EFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGG 204
+ +I+ L +G + + +I + G
Sbjct: 65 K----EKIQVRLANGLAAFEETDQVSVITIAG 92
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 50.7 bits (120), Expect = 6e-08
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 99 YGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQ 158
YG P + L L E G+ VLD+G G+ T +A G + +++G++ +
Sbjct: 25 YGYR--NPSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPS-RMVGLDIDSR 81
Query: 159 LVQRATHNV 167
L+ A N+
Sbjct: 82 LIHSARQNI 90
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 50.6 bits (121), Expect = 7e-08
Identities = 26/122 (21%), Positives = 39/122 (31%), Gaps = 20/122 (16%)
Query: 94 ITNIGYGAHM-QAPFQQA---MVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGK 149
I I H PF + + L + G ++LD+GSG+G A G
Sbjct: 6 IFTISESEHRIHNPFTEEKYATLGRVL--RMKPGTRILDLGSGSGEMLCTWARDHG--IT 61
Query: 150 VIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII-------HV 202
GI+ +A R+ F+ D GY+ D+
Sbjct: 62 GTGIDMSSLFTAQAKRRAEELGVS----ERVHFIHNDAA-GYVANEKCDVAACVGATWIA 116
Query: 203 GG 204
GG
Sbjct: 117 GG 118
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 49.3 bits (118), Expect = 1e-07
Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 9/102 (8%)
Query: 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS 169
+++ E + +D+G G G T LA G+ +V I+ P+ + N+
Sbjct: 23 CLIMCLA--EPGKNDVAVDVGCGTGGVTLELA---GRVRRVYAIDRNPEAISTTEMNLQ- 76
Query: 170 GNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
+ + GD + DI VGGS ++ E
Sbjct: 77 ---RHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQE 115
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 49.5 bits (118), Expect = 1e-07
Identities = 23/116 (19%), Positives = 48/116 (41%), Gaps = 11/116 (9%)
Query: 98 GYGAHMQAPFQQAM--VLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEH 155
Y ++ + + L + + + KVLD+ G G F+ LL +V+G++
Sbjct: 12 TYTDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLE---DYGFEVVGVDI 68
Query: 156 IPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
++++A S ++F++GD RK ++ +D + SI
Sbjct: 69 SEDMIRKAREYAKSRES------NVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEP 118
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 49.4 bits (118), Expect = 1e-07
Identities = 26/106 (24%), Positives = 37/106 (34%), Gaps = 14/106 (13%)
Query: 98 GYGAHMQAPFQQAMVLDDLSE--ELTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIE 154
+G + + + EL E KVLDIGSG G + K G GI+
Sbjct: 30 IFGENYISSGGLEAT-KKILSDIELNENSKVLDIGSGLGGGCMYIN---EKYGAHTHGID 85
Query: 155 HIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 200
+V A V + +I F D E +D+I
Sbjct: 86 ICSNIVNMANERVS-------GNNKIIFEANDILTKEFPENNFDLI 124
>3ll7_A Putative methyltransferase; methytransferase, structural genomics,
MCSG, PSI-2, protein initiative; HET: MSE; 1.80A
{Porphyromonas gingivalis}
Length = 410
Score = 49.8 bits (118), Expect = 2e-07
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 10/89 (11%)
Query: 117 SEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVK 176
S + EG KV+D+ G G L K + I IE + A HN+ +
Sbjct: 88 SRFIREGTKVVDLTGGLGIDFIALM---SKASQGIYIERNDETAVAARHNI---PLLLNE 141
Query: 177 DGRIKFVLGDGRKGYLDEAP---YDIIHV 202
+ + GD ++ YL D I+V
Sbjct: 142 GKDVNILTGDFKE-YLPLIKTFHPDYIYV 169
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 48.7 bits (116), Expect = 2e-07
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 113 LDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNP 172
L ++ + +G ++LD+GS + Y L +G I E + Q A NV
Sbjct: 12 LQKVANYVPKGARLLDVGSDHAYLPIFLL-QMGYCDFAIAGEVVNGPYQSALKNVSEHGL 70
Query: 173 EFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGG 204
+I L +G + + D I + G
Sbjct: 71 T----SKIDVRLANGLSAFEEADNIDTITICG 98
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 48.9 bits (116), Expect = 2e-07
Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 15/105 (14%)
Query: 99 YGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQ 158
+ + P + LS LT +VL+ G G+G A + + + P+
Sbjct: 25 WARVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFG---PQAARWAAYDFSPE 81
Query: 159 LVQRATHNVISGNPEFVKDGRIKFVLGDGRKG--YLDEAPYDIIH 201
L++ A N +G+ AP+ +I
Sbjct: 82 LLKLARANA----------PHADVYEWNGKGELPAGLGAPFGLIV 116
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 48.6 bits (116), Expect = 2e-07
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 123 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKF 182
+DIGSG G + LA + ++ + + A N+ N + RI+
Sbjct: 44 AGTCIDIGSGPGALSIALAKQSD--FSIRALDFSKHMNEIALKNIADAN----LNDRIQI 97
Query: 183 VLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
V GD +++ D+I GS+ +
Sbjct: 98 VQGDVHNIPIEDNYADLIVSRGSVFFWED 126
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 49.1 bits (117), Expect = 2e-07
Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 6/97 (6%)
Query: 115 DLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEF 174
++ L K LD+G+G G L G + + P +R N +
Sbjct: 75 AMTGVLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEY----NNQA 128
Query: 175 VKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
I G + ++ YD I + P+
Sbjct: 129 GLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPD 165
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 48.6 bits (116), Expect = 3e-07
Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 14/119 (11%)
Query: 99 YGAHMQAPFQQAMVLDDLSEE------LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIG 152
A A D L++E + G +VLD+G G G LA +V G
Sbjct: 34 EDAGADVSVDDAT--DRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARD--VRVTG 89
Query: 153 IEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
I V +A + R+ F D ++A +D + S+ +P+
Sbjct: 90 ISISRPQVNQANARATAAGL----ANRVTFSYADAMDLPFEDASFDAVWALESLHHMPD 144
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 47.3 bits (113), Expect = 3e-07
Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 16/92 (17%)
Query: 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR 179
+ ++D G GNG++ L K+ I+ ++ +
Sbjct: 15 EGKKGVIVDYGCGNGFYCKYLL---EFATKLYCIDINVIALKEVKE-------------K 58
Query: 180 IKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
V+ + + D I S D+ +
Sbjct: 59 FDSVITLSDPKEIPDNSVDFILFANSFHDMDD 90
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 48.3 bits (115), Expect = 3e-07
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 113 LDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNP 172
L+ ++ +T+ +++ DIGS + Y I E + Q A V S
Sbjct: 12 LEKVASYITKNERIADIGSDHAYLPCFAV-KNQTASFAIAGEVVDGPFQSAQKQVRSSGL 70
Query: 173 EFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGG 204
+I G+G + D I + G
Sbjct: 71 T----EQIDVRKGNGLAVIEKKDAIDTIVIAG 98
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 48.5 bits (115), Expect = 4e-07
Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 9/91 (9%)
Query: 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIK 181
E K ++D+G G G T +A + ++IG + +++ A + +
Sbjct: 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTY---KNVS 92
Query: 182 FVLGDG------RKGYLDEAPYDIIHVGGSI 206
F + +D+ D+I
Sbjct: 93 FKISSSDDFKFLGADSVDKQKIDMITAVECA 123
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 47.2 bits (112), Expect = 5e-07
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 10/87 (11%)
Query: 116 LSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFV 175
L+E L + V+D GNG TA LA G + KV + Q + + + + E
Sbjct: 16 LAEVLDDESIVVDATMGNGNDTAFLA---GLSKKVYAFDVQEQALGKTSQRLSDLGIE-- 70
Query: 176 KDGRIKFVLGDGR--KGYLDEAPYDII 200
+ +L Y+ E I
Sbjct: 71 ---NTELILDGHENLDHYVREPIRAAI 94
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 47.7 bits (113), Expect = 5e-07
Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 9/107 (8%)
Query: 96 NIGYGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEH 155
+ P + L L + K+VL+ G+G+G A+L+ G+ E
Sbjct: 67 GFERKTQIIYPKDSFYIALKL--NLNKEKRVLEFGTGSGALLAVLSEVAGEVW---TFEA 121
Query: 156 IPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHV 202
+ + + A N+ +F +KF D + + E + V
Sbjct: 122 VEEFYKTAQKNL----KKFNLGKNVKFFNVDFKDAEVPEGIFHAAFV 164
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 47.7 bits (113), Expect = 6e-07
Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 13/101 (12%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGI------EHIPQLVQRATHNVISGNP 172
++ G+K+L+IG G G +A+LA VG +G V GI P + +A +++++G
Sbjct: 40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAG-- 97
Query: 173 EFVKDGRIKFVLGDGRKGYLDEAP---YDIIHVGGSIEDIP 210
R+ L +D + + S+
Sbjct: 98 --PLGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFA 136
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 1e-06
Identities = 36/241 (14%), Positives = 67/241 (27%), Gaps = 63/241 (26%)
Query: 5 CHIFWLAFGHLATGQEIFGINNKPNNYENNLDVQVCMGKHKGTKMEKKPMEYLVEHLKET 64
IFWL + + + + +D + K + + L+
Sbjct: 182 FKIFWLNLKNCNSPETVL---EMLQKLLYQIDPNWTSRSD-HSSNIKLRIHSIQAELRRL 237
Query: 65 LFIESELPYKAMLAV--DRGHYTTWRPYA-NC---IT--NIGYGAHMQAPFQQAMVLDDL 116
L + PY+ L V + + W + +C +T + A + LD
Sbjct: 238 LKSK---PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 117 SEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVK 176
S LT + +LL + + +P+ V +S E ++
Sbjct: 295 SMTLTPDEVK-----------SLLLKYLD-----CRPQDLPREVLTTNPRRLSIIAESIR 338
Query: 177 DG--RIKF------------------VL--GDGRKGYLDEA--PYDIIHVGGSIEDIPEG 212
DG VL + RK + + P IP
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA--------HIPTI 390
Query: 213 I 213
+
Sbjct: 391 L 391
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 46.7 bits (111), Expect = 1e-06
Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 26/127 (20%)
Query: 87 WRP--YANCITNIGYGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCV 144
W Y + + + + +L L G+ +LD+G G G T +A
Sbjct: 30 WDATLYQD------KHSFVWQYGED--LLQLL--NPQPGEFILDLGCGTGQLTEKIAQ-- 77
Query: 145 GKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGG 204
+V+G ++ ++++A + F + D R +D+ P D +
Sbjct: 78 -SGAEVLGTDNAATMIEKARQ----------NYPHLHFDVADARNFRVDK-PLDAVFSNA 125
Query: 205 SIEDIPE 211
+ + E
Sbjct: 126 MLHWVKE 132
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 45.7 bits (108), Expect = 2e-06
Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 8/75 (10%)
Query: 115 DLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEF 174
E K VLD G+G + G K GIE +++A + N
Sbjct: 16 KYCNESNLDKTVLDCGAGGDLPPLSIFVEDG--YKTYGIEISDLQLKKAENFSRENNF-- 71
Query: 175 VKDGRIKFVLGDGRK 189
++ GD RK
Sbjct: 72 ----KLNISKGDIRK 82
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 45.6 bits (108), Expect = 2e-06
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 18/101 (17%)
Query: 101 AHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQL 159
A + +A ++D ++ G K+LD G G G L+ K G V+G + P L
Sbjct: 28 AAGNDIYGEARLIDAMAPR---GAKILDAGCGQGRIGGYLS----KQGHDVLGTDLDPIL 80
Query: 160 VQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 200
+ A + PE ++V+GD + E +D+I
Sbjct: 81 IDYAKQDF----PE------ARWVVGDLSVDQISETDFDLI 111
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 45.7 bits (108), Expect = 3e-06
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 14/69 (20%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 178
L +G + DIG+G G ++ LA + V +E + Q+A +
Sbjct: 31 NLPKGSVIADIGAGTGGYSVALA---NQGLFVYAVEPSIVMRQQAVVH-----------P 76
Query: 179 RIKFVLGDG 187
++++ G
Sbjct: 77 QVEWFTGYA 85
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 45.3 bits (107), Expect = 3e-06
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Query: 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIK 181
KKV+D+G G G +LL ++ G++ +++RA + ++ RI
Sbjct: 29 NAKKVIDLGCGEGNLLSLLLKDKSFE-QITGVDVSYSVLERAKDRLKIDRLPEMQRKRIS 87
Query: 182 FVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
+ YD V IE + E
Sbjct: 88 LFQSSLVYRDKRFSGYDAATVIEVIEHLDE 117
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 45.3 bits (107), Expect = 3e-06
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 10/90 (11%)
Query: 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIK 181
K VLD+G G G+ A K KV+GI+ +++ A +
Sbjct: 44 NQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRK--------TTSPVVC 93
Query: 182 FVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
+ ++ Y+++ ++ I
Sbjct: 94 YEQKAIEDIAIEPDAYNVVLSSLALHYIAS 123
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 45.2 bits (107), Expect = 3e-06
Identities = 17/86 (19%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 115 DLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEF 174
++ TE +LD+G+G G +A L + ++ ++++ A + F
Sbjct: 37 SIASVDTENPDILDLGAGTGLLSAFLMEKYPE-ATFTLVDMSEKMLEIAKNR-------F 88
Query: 175 VKDGRIKFVLGDGRKGYLDEAPYDII 200
+ ++K++ D K +E YD++
Sbjct: 89 RGNLKVKYIEADYSKYDFEE-KYDMV 113
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 44.9 bits (106), Expect = 4e-06
Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 178
+ + ++V+D+G G G +L ++ G++ + ++ A + +
Sbjct: 26 KQSNARRVIDLGCGQGNLLKILLKD-SFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWE 84
Query: 179 RIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
R++ + G YD V IE +
Sbjct: 85 RLQLIQGALTYQDKRFHGYDAATVIEVIEHLDL 117
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 44.8 bits (106), Expect = 7e-06
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS 169
A++L S K++D+ SGNG LL+ K++G+E +L A + ++
Sbjct: 37 AVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLADMAKRS-VA 93
Query: 170 GNPEFVKDGRIKFVLGDGRK--GYLDEAPYDII 200
N + +I+ + D +K + + DI+
Sbjct: 94 YNQ---LEDQIEIIEYDLKKITDLIPKERADIV 123
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 44.5 bits (105), Expect = 7e-06
Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 18/101 (17%)
Query: 113 LDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRAT--HNVISG 170
L ++VLDIG G G F L C + + IG++ +++ NV+
Sbjct: 32 LRRYIPYFKGCRRVLDIGCGRGEF---LELCKEEGIESIGVDINEDMIKFCEGKFNVVKS 88
Query: 171 NPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
+ L + D + + +E +
Sbjct: 89 DAIEYLKS-------------LPDKYLDGVMISHFVEHLDP 116
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 43.8 bits (103), Expect = 1e-05
Identities = 14/101 (13%), Positives = 33/101 (32%), Gaps = 12/101 (11%)
Query: 106 PFQQAMVLDDLSEELT---EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQR 162
P + ++ + E L++G G G L + + I ++ +++
Sbjct: 20 PEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLI---ARGYRYIALDADAAMLEV 76
Query: 163 ATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVG 203
+ D +++ V D R L + + V
Sbjct: 77 FRQKIAG------VDRKVQVVQADARAIPLPDESVHGVIVV 111
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 43.6 bits (103), Expect = 1e-05
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 113 LDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNP 172
+ + E++ GK++ DIG G G T LLA +V G++ ++++ A + N
Sbjct: 24 VAWVLEQVEPGKRIADIGCGTGTATLLLA----DHYEVTGVDLSEEMLEIAQEKAMETNR 79
Query: 173 EFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSI 206
+ F + D R+ L E I + S+
Sbjct: 80 ------HVDFWVQDMRELELPEPVDAITILCDSL 107
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 43.7 bits (103), Expect = 1e-05
Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 15/91 (16%)
Query: 122 EGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRATHNVISGNPEFVKDGRI 180
+L++GS G FT+ L + + +E + + A + G I
Sbjct: 42 RPGNLLELGSFKGDFTSRLQ----EHFNDITCVEASEEAISHAQGRLKDG---------I 88
Query: 181 KFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
++ L YD I + +E I +
Sbjct: 89 TYIHSRFEDAQLPR-RYDNIVLTHVLEHIDD 118
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 43.6 bits (103), Expect = 1e-05
Identities = 21/114 (18%), Positives = 46/114 (40%), Gaps = 16/114 (14%)
Query: 98 GYGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIP 157
G + P +AM L ++ G +++D+G G G+F V+G++
Sbjct: 25 GLDGAAEWPALRAM-LPEVG-----GLRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSE 76
Query: 158 QLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
+++ RA D I + D K +L + +D+ + ++ + +
Sbjct: 77 KMLARAR--------AAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVED 122
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
transferase; 1.90A {Geobacter sulfurreducens pca}
Length = 210
Score = 42.6 bits (101), Expect = 2e-05
Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 11/101 (10%)
Query: 103 MQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQR 162
Q +L L+ + + + V+ G G G + A + + +V+ I+ V+
Sbjct: 38 PIVDRQTGRLLYLLAR-IKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEH 96
Query: 163 ATHNVISGNPEFVKDG---RIKFVLGDGRKGYLDEAPYDII 200
A +G R++ +GD + DI+
Sbjct: 97 ARRM-------LHDNGLIDRVELQVGDPLGIAAGQRDIDIL 130
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 42.6 bits (100), Expect = 3e-05
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 8/102 (7%)
Query: 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS 169
A+ L L L + + DIG+G+ + + + G++ +E PQ + I
Sbjct: 30 AVTLSKL--RLQDDLVMWDIGAGSASVSIEAS-NLMPNGRIFALERNPQYLGF-----IR 81
Query: 170 GNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
N + + V +G D D + +GGS + E
Sbjct: 82 DNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGSGGMLEE 123
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 42.3 bits (99), Expect = 4e-05
Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 13/88 (14%)
Query: 116 LSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG--KVIGIEHIPQLVQRATHNVISGNPE 173
L EL ++L +G GN + L G V +++ +V
Sbjct: 36 LEPELRPEDRILVLGCGNSALSYELF----LGGFPNVTSVDYSSVVVAAMQAC------- 84
Query: 174 FVKDGRIKFVLGDGRKGYLDEAPYDIIH 201
+ ++++ D RK A +D++
Sbjct: 85 YAHVPQLRWETMDVRKLDFPSASFDVVL 112
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium; 1.88A {Klebsiella pneumoniae subsp}
Length = 248
Score = 42.3 bits (100), Expect = 4e-05
Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 14/106 (13%)
Query: 101 AHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLV 160
Q L L LT+ K++L+IG+ GY T +A + G+++ +E
Sbjct: 43 PAHDVAANQGQFLALLVR-LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHA 101
Query: 161 QRATHNVISGNPEFVKDG---RIKFVLGDGR---KGYLDEAPYDII 200
Q A N G R+ G + + +D+I
Sbjct: 102 QVAREN-------LQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH;
1.37A {Mesembryanthemum crystallinum}
Length = 237
Score = 41.9 bits (99), Expect = 5e-05
Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 18/110 (16%)
Query: 101 AHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLV 160
++M ++ + + L KK +++G GY L A + GK+ I+ +
Sbjct: 50 SYMSTSPLAGQLMSFVLK-LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAY 108
Query: 161 QRATHNVISGNPEFVKDG---RIKFVLGDG-------RKGYLDEAPYDII 200
+ K G +I F+ D +G E YD
Sbjct: 109 EIGLPF-------IRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFG 151
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann
superfamily, S-adenosyl-L-M (SAM) binding, nucleolus;
HET: SAM; 1.73A {Aeropyrum pernix}
Length = 233
Score = 41.6 bits (97), Expect = 6e-05
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 108 QQAMVLDDLSE-ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN 166
A +L L E + EG ++L +G +G + ++ +G G++ G+E P++++
Sbjct: 62 LAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTV 121
Query: 167 VISGNPEFVKDGRIKFVLGDGRK 189
V I +LGD R
Sbjct: 122 VRDRR-------NIFPILGDARF 137
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 41.4 bits (97), Expect = 7e-05
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR 179
++ D+G+G G +A + K +V E ++ + A ++ + R
Sbjct: 34 DDRACRIADLGAGAGAAGMAVAARLEKA-EVTLYERSQEMAEFARRSLELPDNAAFSA-R 91
Query: 180 IKFVLGD 186
I+ + D
Sbjct: 92 IEVLEAD 98
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 41.6 bits (97), Expect = 8e-05
Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 7/97 (7%)
Query: 104 QAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRA 163
+ L ++D GNG T L+ +VIG++ ++ A
Sbjct: 38 NVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLS---QFFPRVIGLDVSKSALEIA 94
Query: 164 THNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 200
+ N + R+ L + + D
Sbjct: 95 AKENTAANISY----RLLDGLVPEQAAQIHSEIGDAN 127
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 41.0 bits (96), Expect = 8e-05
Identities = 16/79 (20%), Positives = 21/79 (26%), Gaps = 13/79 (16%)
Query: 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIK 181
VL+ G G G T L V GIE ++ A +
Sbjct: 45 SFGNVLEFGVGTGNLTNKLL---LAGRTVYGIEPSREMRMIAKEKL---------PKEFS 92
Query: 182 FVLGDGRKGYLDEAPYDII 200
GD + D I
Sbjct: 93 ITEGDFLSFEVPT-SIDTI 110
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification,
iron-sulfur cluster, RNA processing; 1.95A {Escherichia
coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Length = 433
Score = 41.7 bits (99), Expect = 9e-05
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN 166
++ +VLD+ G G FT LA + V+G+E +P LV++ N
Sbjct: 283 DVQPEDRVLDLFCGMGNFTLPLA---TQAASVVGVEGVPALVEKGQQN 327
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 41.1 bits (96), Expect = 9e-05
Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 18/116 (15%)
Query: 99 YGAHMQAPFQQAM--VLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHI 156
Y A A L+ L VL++ SG GY+T L+ G +V ++
Sbjct: 22 YDATFVPYMDSAAPAALERLRA-GNIRGDVLELASGTGYWTRHLS---GLADRVTALDGS 77
Query: 157 PQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLD-EAPYDIIHVGGSIEDIPE 211
+++ A + + ++F D + +D + + +P+
Sbjct: 78 AEMIAEAGRHGLD---------NVEFRQQDLFD--WTPDRQWDAVFFAHWLAHVPD 122
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold,
protein-cofactor-substrate complex; HET: SAH FRE; 2.70A
{Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Length = 247
Score = 41.2 bits (97), Expect = 9e-05
Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 18/110 (16%)
Query: 101 AHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLV 160
M + L L + L K ++IG GY A + + GK++ ++ +
Sbjct: 59 NIMTTSADEGQFLSMLLK-LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENY 117
Query: 161 QRATHNVISGNPEFVKDG---RIKFVLGDGR-------KGYLDEAPYDII 200
+ K G +I F G K + YD I
Sbjct: 118 ELGLPV-------IKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFI 160
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 41.0 bits (96), Expect = 1e-04
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 113 LDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRA 163
L EL G K+L++G G GY + G V + P+L A
Sbjct: 34 LTKFLGELPAGAKILELGCGAGYQAEAML----AAGFDVDATDGSPELAAEA 81
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 40.9 bits (96), Expect = 1e-04
Identities = 13/103 (12%), Positives = 30/103 (29%), Gaps = 12/103 (11%)
Query: 99 YGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIP 157
A + +++ E LD+ G G T L ++
Sbjct: 14 IRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLC----PKFKNTWAVDLSQ 69
Query: 158 QLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 200
+++ A + S + + D ++ +D+I
Sbjct: 70 EMLSEAENKFRSQGL------KPRLACQDISNLNINR-KFDLI 105
>2avd_A Catechol-O-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens}
SCOP: c.66.1.1
Length = 229
Score = 40.8 bits (96), Expect = 1e-04
Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 11/106 (10%)
Query: 101 AHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLV 160
+QA +L +L+ L + KK LD+G+ GY LA + G+V+ E Q
Sbjct: 49 GDSMMTCEQAQLLANLAR-LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPP 107
Query: 161 QRATHNVISGNPEFVKDGRIKFVLGDGR------KGYLDEAPYDII 200
+ + +I L + +D+
Sbjct: 108 ELGRPLWRQAE----AEHKIDLRLKPALETLDELLAAGEAGTFDVA 149
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 40.6 bits (95), Expect = 1e-04
Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 10/105 (9%)
Query: 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS 169
A+ L L G+ + DIG G+G + G+ I IE ++ N+
Sbjct: 45 ALTLAAL--APRRGELLWDIGGGSGSVSVEWC---LAGGRAITIEPRADRIENIQKNID- 98
Query: 170 GNPEFVKDGRIKFVLGDGRKGYLDEAPYD-IIHVGGSIEDIPEGI 213
+ R++ V G D + + GG + + + +
Sbjct: 99 ---TYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGGSQALYDRL 140
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 40.8 bits (95), Expect = 1e-04
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 9/88 (10%)
Query: 123 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKF 182
+ LD G+G G T L + +E + +++ A E KF
Sbjct: 94 TSRALDCGAGIGRITKNLLTKLYA--TTDLLEPVKHMLEEAKR-------ELAGMPVGKF 144
Query: 183 VLGDGRKGYLDEAPYDIIHVGGSIEDIP 210
+L L YD+I + + +
Sbjct: 145 ILASMETATLPPNTYDLIVIQWTAIYLT 172
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 40.6 bits (95), Expect = 1e-04
Identities = 16/113 (14%), Positives = 33/113 (29%), Gaps = 19/113 (16%)
Query: 99 YGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQ 158
Y + + L + ++IG G G F L IG+E +
Sbjct: 24 YERWFLVHRFAYLSELQAVKCLLPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSER 76
Query: 159 LVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
+ + A + + G L + +D + +I + +
Sbjct: 77 MAEIARKR------------GVFVLKGTAENLPLKDESFDFALMVTTICFVDD 117
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 41.4 bits (96), Expect = 1e-04
Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 1/91 (1%)
Query: 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS-GNPEFVKDGRI 180
++D G G+G L +IG++ P+ + RA + N E
Sbjct: 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSA 780
Query: 181 KFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
G + DI IE + E
Sbjct: 781 TLYDGSILEFDSRLHDVDIGTCLEVIEHMEE 811
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 40.5 bits (95), Expect = 1e-04
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 178
E +VLDIG+G G+ + + IG++ ++V+ A+ E
Sbjct: 18 ECRAEHRVLDIGAGAGHTALAFS---PYVQECIGVDATKEMVEVASSFAQEKGVE----- 69
Query: 179 RIKFVLGD 186
++F G
Sbjct: 70 NVRFQQGT 77
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase,
usnRNA, snoRNA, telomerase, cytoplasm,
methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo
sapiens} PDB: 3egi_A*
Length = 241
Score = 40.4 bits (94), Expect = 2e-04
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 8/84 (9%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 178
+ + V+D G G T A +VI I+ P + A +N + D
Sbjct: 75 QSFKCDVVVDAFCGVGGNTIQFA---LTGMRVIAIDIDPVKIALARNNAEVYG---IAD- 127
Query: 179 RIKFVLGDGRKGYLDEAPYDIIHV 202
+I+F+ GD D++ +
Sbjct: 128 KIEFICGDFLL-LASFLKADVVFL 150
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella
burnetii}
Length = 225
Score = 40.3 bits (95), Expect = 2e-04
Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 17/109 (15%)
Query: 101 AHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLV 160
MQ +QA +L L + L + KKV+DIG+ GY + + K G +I + +
Sbjct: 44 YAMQTAPEQAQLLALLVK-LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKST 102
Query: 161 QRATHNVISGNPEFVKDG---RIKFVLGDGR------KGYLDEAPYDII 200
A + K G +I L + YD+I
Sbjct: 103 ALAKEY-------WEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLI 144
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Length = 242
Score = 40.4 bits (95), Expect = 2e-04
Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 17/109 (15%)
Query: 101 AHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLV 160
A+MQ +QA + L LT KKVL++G+ GY ++ + G+VI +
Sbjct: 40 ANMQVAPEQAQFMQMLIR-LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWT 98
Query: 161 QRATHNVISGNPEFVKDG---RIKFVLGDGR------KGYLDEAPYDII 200
+ A + + +IK LG E +D I
Sbjct: 99 KHAHPY-------WREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI 140
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 40.3 bits (94), Expect = 2e-04
Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 8/103 (7%)
Query: 99 YGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIP 157
Y +Q + + + VL++ +G G T G +V +E
Sbjct: 59 YRDLIQDADGTSEAREFATRTGPVSGPVLELAAGMGRLTFPFL----DLGWEVTALELST 114
Query: 158 QLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 200
++ + + R V GD LD+ + +
Sbjct: 115 SVLAAFRKRLAEAPADV--RDRCTLVQGDMSAFALDK-RFGTV 154
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 40.1 bits (94), Expect = 2e-04
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 122 EGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRA 163
E K+VLDIG +G A + + G +V GIE P+ ++A
Sbjct: 32 EWKEVLDIGCSSGALGAAIK----ENGTRVSGIEAFPEAAEQA 70
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 40.2 bits (94), Expect = 2e-04
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 98 GYGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIP 157
G + QA+ L + + ++VLD+G G G+ LA + + +G++
Sbjct: 31 GAIESRRQVTDQAI-LLAILGR--QPERVLDLGCGEGWLLRALA---DRGIEAVGVDGDR 84
Query: 158 QLVQRA 163
LV A
Sbjct: 85 TLVDAA 90
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 2e-04
Identities = 29/162 (17%), Positives = 49/162 (30%), Gaps = 65/162 (40%)
Query: 85 TTWRPYANCITN-------IGYGAHMQAP---FQQAMVLDDLSEELTEGKKVLDIGSGNG 134
+W + + IG + P +++ D S E EG
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED--SLENNEGVP--------- 335
Query: 135 YFTALLAWCVGKTGKVIG--IE----HIPQ-------LVQRATHNVISGNPE-------- 173
+ +L+ T + + + H+P LV A + V+SG P+
Sbjct: 336 --SPMLS-ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT 392
Query: 174 ----FVKDG----RIKFVLGDGRK-----GYLD-EAPYDIIH 201
G RI F RK +L +P+ H
Sbjct: 393 LRKAKAPSGLDQSRIPF---SERKLKFSNRFLPVASPF---H 428
Score = 29.6 bits (66), Expect = 0.87
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 17/53 (32%)
Query: 30 NYENNLDVQ-VCMG---------------KHKGTKMEKKPMEYLVEHLKETLF 66
NY N + Q V G K + + + +E ++ LF
Sbjct: 1845 NY-NVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.25A {Corynebacterium glutamicum}
Length = 221
Score = 39.6 bits (93), Expect = 2e-04
Identities = 9/81 (11%), Positives = 22/81 (27%), Gaps = 5/81 (6%)
Query: 124 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFV 183
+ I G + + + I+ + ++A R++F+
Sbjct: 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAG---YSPSRVRFL 114
Query: 184 LGDGRK--GYLDEAPYDIIHV 202
L L Y ++
Sbjct: 115 LSRPLDVMSRLANDSYQLVFG 135
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 39.1 bits (92), Expect = 3e-04
Identities = 18/96 (18%), Positives = 41/96 (42%), Gaps = 11/96 (11%)
Query: 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS 169
A+ + L L + V+D+G G+G T + + V I+++ ++ N+
Sbjct: 25 AVSIGKL--NLNKDDVVVDVGCGSGGMT--VEIA-KRCKFVYAIDYLDGAIEVTKQNLAK 79
Query: 170 GNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGS 205
N + + + G + LD+ ++ +GG+
Sbjct: 80 FNIK-----NCQIIKGRA-EDVLDKLEFNKAFIGGT 109
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta
with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB:
3dul_A*
Length = 223
Score = 39.5 bits (93), Expect = 3e-04
Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 18/109 (16%)
Query: 101 AHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLV 160
Q L L + + + +L+IG+ GY T LA + G+V+ +E +
Sbjct: 38 PAHDVSPTQGKFLQLLVQ-IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHA 96
Query: 161 QRATHNVISGNPEFVKDG---RIKFVLGDGRKGYLDE------APYDII 200
A N + R++ G L + P+D I
Sbjct: 97 DIARSN-------IERANLNDRVEVRTGLALD-SLQQIENEKYEPFDFI 137
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 39.4 bits (92), Expect = 3e-04
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 102 HMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGI----EHIP 157
+ ++ L E L +VLD+G G G ++ L + +V+ + E +
Sbjct: 34 TPKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQ---ERGFEVVLVDPSKEMLE 90
Query: 158 QLVQRATHNVISGNPE 173
++ NV+ E
Sbjct: 91 VAREKGVKNVVEAKAE 106
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 39.0 bits (91), Expect = 4e-04
Identities = 23/117 (19%), Positives = 37/117 (31%), Gaps = 17/117 (14%)
Query: 99 YGAHMQAPFQQAMVLDDLSEELTEGK--KVLDIGSGNGYFTALLAWCVGKTG-KVIGIEH 155
A + L E G +LD+GSG G +T LA G ++ G+E
Sbjct: 16 AEALLGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLA----SLGHQIEGLEP 71
Query: 156 IPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEG 212
+LV+ A + F G + + S+ + G
Sbjct: 72 ATRLVELARQTH----------PSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPG 118
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding,
tRNA methyltransferase, S-adenosyl-L-methionine, iron,
4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi}
PDB: 2vs1_A*
Length = 425
Score = 39.8 bits (94), Expect = 4e-04
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 107 FQ----QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQR 162
FQ QA+ L EL EG+K+LD+ SG G F LA + V G + ++
Sbjct: 271 FQTNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLA---KRGFNVKGFDSNEFAIEM 327
Query: 163 ATHN 166
A N
Sbjct: 328 ARRN 331
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 39.8 bits (92), Expect = 4e-04
Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 13/88 (14%)
Query: 106 PFQQAMVLDDLSEELTEGKKVLDIGSGNG---YFTALLAWCVGKTGKVIGIEHIPQLVQR 162
A ++D++ ++T+ +D+GSG G A C G+E +
Sbjct: 159 FDLVAQMIDEI--KMTDDDLFVDLGSGVGQVVLQVAAATNC----KHHYGVEKADIPAKY 212
Query: 163 ATHNVISGNPEF----VKDGRIKFVLGD 186
A K GD
Sbjct: 213 AETMDREFRKWMKWYGKKHAEYTLERGD 240
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A
{Synechocystis SP}
Length = 232
Score = 39.2 bits (92), Expect = 4e-04
Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 19/110 (17%)
Query: 101 AHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLV 160
A MQ +QA L L LT K+VL+IG GY +A + G++I + P
Sbjct: 52 APMQISPEQAQFLGLLIS-LTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNAT 110
Query: 161 QRATHNVISGNPEFVKDG---RIKFVLGDGRKGYLDE-------APYDII 200
A + K G +I LG L++ +D+I
Sbjct: 111 AIAKKY-------WQKAGVAEKISLRLGPALA-TLEQLTQGKPLPEFDLI 152
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH;
2.30A {Leptospira interrogans}
Length = 239
Score = 39.2 bits (92), Expect = 4e-04
Identities = 18/89 (20%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 101 AHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLV 160
A+MQ ++ L+ L++ ++ K++++IG+ GY + A + + GK++ + +
Sbjct: 40 ANMQISPEEGQFLNILTK-ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWT 98
Query: 161 QRATHNVISGNPEFVKDG---RIKFVLGD 186
A + ++G +I LG
Sbjct: 99 NVARKY-------WKENGLENKIFLKLGS 120
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 39.5 bits (92), Expect = 4e-04
Identities = 14/102 (13%), Positives = 29/102 (28%), Gaps = 14/102 (13%)
Query: 108 QQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRATHN 166
Q ++D L + ++D G G G + + G +V G+
Sbjct: 104 QAEFLMDHLGQ-AGPDDTLVDAGCGRGGSMVMAH---RRFGSRVEGVTLSAAQADFGNRR 159
Query: 167 VISGNPEFVKDGRIKFVLGDGRKGYLD-EAPYDIIHVGGSIE 207
D ++ + + LD + + E
Sbjct: 160 ARELRI----DDHVRSRVCN----MLDTPFDKGAVTASWNNE 193
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 38.7 bits (90), Expect = 5e-04
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 12/82 (14%)
Query: 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRATHNVISGNPEFVKDG 178
E ++VLD+ G G T LA + G +V+G++ ++++ A N
Sbjct: 39 KREVRRVLDLACGTGIPTLELA----ERGYEVVGLDLHEEMLRVARRKAKERNL------ 88
Query: 179 RIKFVLGDGRKGYLDEAPYDII 200
+I+F+ GD + +D +
Sbjct: 89 KIEFLQGDVLEIAFKN-EFDAV 109
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 37.8 bits (88), Expect = 8e-04
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Query: 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN 166
A+ + L + + DIG G+G + E + +R N
Sbjct: 15 ALAISAL--APKPHETLWDIGGGSGSIAIEWL-RSTPQTTAVCFEISEERRERILSN 68
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 38.2 bits (89), Expect = 9e-04
Identities = 15/96 (15%), Positives = 36/96 (37%), Gaps = 15/96 (15%)
Query: 116 LSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFV 175
L L G+ +L++G+G GY+ L + +G+E ++
Sbjct: 30 LKGLLPPGESLLEVGAGTGYWLRRLP-----YPQKVGVEPSEAMLAVGRR---------- 74
Query: 176 KDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
+ +V G +D++ + ++E + +
Sbjct: 75 RAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVED 110
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 38.2 bits (89), Expect = 9e-04
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR 179
L E ++LDIG G+G + LA K V GI+ + ++ A S G+
Sbjct: 28 LQEDDEILDIGCGSGKISLELA---SKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGK 84
Query: 180 IKFVLGDGRKGYLDEAPYDIIHVGGSIEDIP 210
+F + + ++ +D + + +P
Sbjct: 85 AEFKVENASSLSFHDSSFDFAVMQAFLTSVP 115
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP:
c.66.1.56
Length = 409
Score = 38.5 bits (89), Expect = 0.001
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 96 NIGYGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFT-ALLAWCVGKTGKVIGIE 154
Y ++ P+ L ++ +K++D G+ G L+ GK +V IE
Sbjct: 201 EPEYYHEVERPYSTLYFRSGL-LRFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIE 259
Query: 155 HIPQLVQRATHNV 167
+Q + +
Sbjct: 260 PDRINLQTLQNVL 272
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 37.7 bits (88), Expect = 0.001
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 13/91 (14%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 178
+ + +LD+G G G LA + + + ++ A N+ N + +
Sbjct: 49 VVDKDDDILDLGCGYGVIGIALA---DEVKSTTMADINRRAIKLAKENIKLNN---LDNY 102
Query: 179 RIKFVLGDGRKGYLDEAPYDII------HVG 203
I+ V D + + + Y+ I G
Sbjct: 103 DIRVVHSDLYEN-VKDRKYNKIITNPPIRAG 132
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase
S-adenosly-L-methionine dependent methyltransfer
posttranslational modification; 1.59A {Thermus
thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A
2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A*
3egv_A* 3cjt_A*
Length = 254
Score = 37.6 bits (88), Expect = 0.001
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRATHNVI 168
+ L L+ L G KVLD+G+G + +LA K G K +G++ P ++ +A N
Sbjct: 108 RLALKALARHLRPGDKVLDLGTG----SGVLAIAAEKLGGKALGVDIDPMVLPQAEAN-A 162
Query: 169 SGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 200
N V+ ++ L L P+D++
Sbjct: 163 KRNG--VRPRFLEGSLEAA----LPFGPFDLL 188
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 37.5 bits (87), Expect = 0.001
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 11/78 (14%)
Query: 123 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKF 182
L+IG G FT LA ++ I+ +P+ + RA + I +
Sbjct: 52 VSNGLEIGCAAGAFTEKLA---PHCKRLTVIDVMPRAIGRACQRT-------KRWSHISW 101
Query: 183 VLGDGRKGYLDEAPYDII 200
D + E +D+I
Sbjct: 102 AATDILQFSTAE-LFDLI 118
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 37.4 bits (87), Expect = 0.001
Identities = 14/90 (15%), Positives = 24/90 (26%), Gaps = 16/90 (17%)
Query: 112 VLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRATHNVISG 170
+ D + E +LD+ G G K G+E ++ A
Sbjct: 30 IADLVRSRTPEASSLLDVACGTGTHLEHFT----KEFGDTAGLELSEDMLTHARK----- 80
Query: 171 NPEFVKDGRIKFVLGDGRKGYLDEAPYDII 200
+ GD R L + +
Sbjct: 81 -----RLPDATLHQGDMRDFRLGR-KFSAV 104
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 37.6 bits (87), Expect = 0.002
Identities = 21/108 (19%), Positives = 45/108 (41%), Gaps = 16/108 (14%)
Query: 113 LDDLSEELTE------GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN 166
LD + + +++D+G GNG L + KV+ ++ P V + N
Sbjct: 207 LDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQA-KVVFVDESPMAVASSRLN 265
Query: 167 VISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII------HVGGSIED 208
V + PE + R +F++ + G ++ ++ + H ++ D
Sbjct: 266 VETNMPEALD--RCEFMINNALSG-VEPFRFNAVLCNPPFHQQHALTD 310
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine,
methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A
{Escherichia coli}
Length = 369
Score = 37.2 bits (87), Expect = 0.002
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN 166
+L++ GNG F+ LA +V+ E V A +N
Sbjct: 213 SKGDLLELYCGNGNFSLALA---RNFDRVLATEIAKPSVAAAQYN 254
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 37.0 bits (85), Expect = 0.003
Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 7/91 (7%)
Query: 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIK 181
G VLD+G G G LL + G+ G++ + A + ++
Sbjct: 64 RGDSVLDLGCGKGGD--LLKYERAGIGEYYGVDIAEVSINDARVR----ARNMKRRFKVF 117
Query: 182 FVLGDGRKGYLD-EAPYDIIHVGGSIEDIPE 211
F D ++D +D+I S
Sbjct: 118 FRAQDSYGRHMDLGKEFDVISSQFSFHYAFS 148
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Length = 313
Score = 36.9 bits (84), Expect = 0.003
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 4/90 (4%)
Query: 111 MVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRAT--HNVI 168
L+ + ++ VLD+G G G LL W G+ K++ + V++ + +
Sbjct: 23 EFLEKVRQKKKRDITVLDLGCGKGGD--LLKWKKGRINKLVCTDIADVSVKQCQQRYEDM 80
Query: 169 SGNPEFVKDGRIKFVLGDGRKGYLDEAPYD 198
+ +F+ D K L + D
Sbjct: 81 KNRRDSEYIFSAEFITADSSKELLIDKFRD 110
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 36.4 bits (84), Expect = 0.004
Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 13/89 (14%)
Query: 99 YGAHMQAPFQQAMVLDDLSEEL-TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIP 157
A P + A ++ L E L + VLDIG G GY+T A G++
Sbjct: 62 LDAGHYQPLRDA-IVAQLRERLDDKATAVLDIGCGEGYYTHAFAD-ALPEITTFGLDVSK 119
Query: 158 QLVQRATHNVISGNPEFVKDGRIKFVLGD 186
++ A ++ F +
Sbjct: 120 VAIKAAAKR----------YPQVTFCVAS 138
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 36.3 bits (84), Expect = 0.004
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 178
L ++VLD+ +G G+ A KV+ + +++ A +
Sbjct: 34 ALKGNEEVLDVATGGGHVANAFA---PFVKKVVAFDLTEDILKVARAFIEGN-----GHQ 85
Query: 179 RIKFVLGD 186
++++V GD
Sbjct: 86 QVEYVQGD 93
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA
binding, structural genomics, BSGC structure funded by
NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB:
2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Length = 227
Score = 36.2 bits (83), Expect = 0.005
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 110 AMVLDDLSE-ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIP----QLVQRAT 164
A +++ L + GK VL +G +G + ++ VG GK+ GIE P +LV
Sbjct: 60 AAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVE 119
Query: 165 --HNVI 168
N++
Sbjct: 120 ERRNIV 125
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure initiative;
1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Length = 200
Score = 35.8 bits (82), Expect = 0.005
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNV 167
+++ ++ G+ V+D G+GNG A ++ +G V + P ++ A N
Sbjct: 39 YFLIEIYNDGNIGGRSVIDAGTGNGIL-ACGSYLLG-AESVTAFDIDPDAIETAKRNC 94
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 36.0 bits (83), Expect = 0.005
Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 16/90 (17%)
Query: 112 VLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRATHNVISG 170
+ + + +LD+ G G LA + V G+E ++ A
Sbjct: 40 LAALVRRHSPKAASLLDVACGTGMHLRHLA----DSFGTVEGLELSADMLAIARR----- 90
Query: 171 NPEFVKDGRIKFVLGDGRKGYLDEAPYDII 200
++ GD R L + +
Sbjct: 91 -----RNPDAVLHHGDMRDFSLGR-RFSAV 114
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase,
transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Length = 232
Score = 35.7 bits (83), Expect = 0.006
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 124 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG---RI 180
K +L+IG+ GY + A + V IE ++Q A N ++
Sbjct: 73 KNILEIGTAIGYSSMQFA-SISDDIHVTTIERNETMIQYAKQN-------LATYHFENQV 124
Query: 181 KFVLGDGRK--GYLDEAPYDII 200
+ + G+ + +++ YD+I
Sbjct: 125 RIIEGNALEQFENVNDKVYDMI 146
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure
initiative, NEW research center for structural genomics,
nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Length = 233
Score = 35.7 bits (83), Expect = 0.006
Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 14/83 (16%)
Query: 124 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG---RI 180
++L+IG+ GY +A + + ++ IE + + A + G RI
Sbjct: 56 ARILEIGTAIGYSAIRMAQALPE-ATIVSIERDERRYEEAHKH-------VKALGLESRI 107
Query: 181 KFVLGDGR---KGYLDEAPYDII 200
+ + GD + +D++
Sbjct: 108 ELLFGDALQLGEKLELYPLFDVL 130
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 36.1 bits (83), Expect = 0.006
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Query: 112 VLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGN 171
+ + L E G++VLD+G+G G T LA +V+G+E V + +
Sbjct: 223 LQERLGPEGVRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQKGLEANA 279
Query: 172 PEFVKDGRIKFVLGDGRKGYLDEAPYDII------HVGGSIED 208
+ + + D + +EA +DII HVGG++
Sbjct: 280 L------KAQALHSDVDEALTEEARFDIIVTNPPFHVGGAVIL 316
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 35.1 bits (81), Expect = 0.008
Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 11/83 (13%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRATHNVISGNPEFVKD 177
++ + K LD+G GNG + LA G V + + N +
Sbjct: 29 KVVKPGKTLDLGCGNGRNSLYLA----ANGYDVDAWDKNAMSIANVERIKSIENLD---- 80
Query: 178 GRIKFVLGDGRKGYLDEAPYDII 200
+ + D D YD I
Sbjct: 81 -NLHTRVVDLNNLTFDR-QYDFI 101
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification
enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus
jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Length = 336
Score = 35.2 bits (81), Expect = 0.010
Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 15/98 (15%)
Query: 99 YGAHMQAPFQQAMVLDDLSEE-------LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVI 151
G + + L E ++ V+D+ +G G F+ K+
Sbjct: 165 NGYRLWVDIAKVYFSPRLGGERARIMKKVSLNDVVVDMFAGVGPFSIACK----NAKKIY 220
Query: 152 GIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 189
I+ P ++ N+ E +I +L D R+
Sbjct: 221 AIDINPHAIELLKKNIKLNKLE----HKIIPILSDVRE 254
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation,
transferase transferase inhibitor complex; HET: SAH;
1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A*
3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A*
1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A*
3s68_A* 2zlb_A 2zth_A* ...
Length = 221
Score = 35.0 bits (81), Expect = 0.010
Identities = 12/89 (13%), Positives = 30/89 (33%), Gaps = 7/89 (7%)
Query: 100 GAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQL 159
M + ++D + VL++G+ GY +A + +++ +E P
Sbjct: 37 EWAMNVGDAKGQIMDAVIR-EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDC 95
Query: 160 VQRATHNV-ISGNPEFVKDGRIKFVLGDG 187
+ +G ++ + G
Sbjct: 96 AAITQQMLNFAG-----LQDKVTILNGAS 119
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine, RNA metabolism, mRNA
processing, methyltransferase, poxvirus; HET: SAH; 2.70A
{Vaccinia virus}
Length = 302
Score = 35.1 bits (80), Expect = 0.012
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 113 LDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRA 163
+ + +KVL I GNG L + G+ ++ + + R
Sbjct: 39 CSKTFLDDSNKRKVLAIDFGNGAD--LEKYFYGEIALLVATDPDADAIARG 87
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 34.2 bits (78), Expect = 0.019
Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 12/112 (10%)
Query: 104 QAPFQQAMV---LDDLSEELT-EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQL 159
P+ Q + L + + + L G G G+ +A V+G++
Sbjct: 44 ITPWDQGRATPLIVHLVDTSSLPLGRALVPGCGGGHDVVAMA---SPERFVVGLDISESA 100
Query: 160 VQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
+ +A K FV D + +D+I I
Sbjct: 101 LAKANET----YGSSPKAEYFSFVKEDVFT-WRPTELFDLIFDYVFFCAIEP 147
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 34.3 bits (79), Expect = 0.021
Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 31/111 (27%)
Query: 107 FQQAM------VLDDLSE--ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQ 158
F AM ++D +SE + V+D+ G+G + A + PQ
Sbjct: 156 FNDAMVRLSQPMVDVVSELGVFARARTVIDLAGGHGTYLAQVL------------RRHPQ 203
Query: 159 LVQRAT----HNVISGNPEFVKD----GRIKFVLGDGRKGYLDEAP-YDII 200
L + + GR++F + E D++
Sbjct: 204 L--TGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVV 252
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 33.9 bits (77), Expect = 0.025
Identities = 15/96 (15%), Positives = 28/96 (29%), Gaps = 11/96 (11%)
Query: 125 KVLDIGSGNGYFT-----ALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS----GNPEF- 174
K+L IG G G + A G +E + + + V N +F
Sbjct: 55 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFA 114
Query: 175 VKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIP 210
+ + +D IH+ + +
Sbjct: 115 WHKETSSEYQSRMLEKKELQ-KWDFIHMIQMLYYVK 149
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 33.4 bits (76), Expect = 0.038
Identities = 23/147 (15%), Positives = 39/147 (26%), Gaps = 17/147 (11%)
Query: 55 EYLVEHLKETLFIESELPYKAMLAVDRGHYTTWRPYANCITNIGYGAHMQAPFQQAMVLD 114
E++ F+E + ++ D +
Sbjct: 58 EHIFTPESHIPFVEPQAWHRVEALSD-----DLECTLGFYCKKEDYFSKKYNTTAIHGDV 112
Query: 115 DLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRATHNVISGNPE 173
+ ++ KVLD+G G G + L+ G V +H + N
Sbjct: 113 VDAAKIISPCKVLDLGCGQGRNSLYLS----LLGYDVTSWDHNENSIAFLNETKEKENL- 167
Query: 174 FVKDGRIKFVLGDGRKGYLDEAPYDII 200
I L D + E YD I
Sbjct: 168 -----NISTALYDINAANIQE-NYDFI 188
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet,
methyltransferase fold, structura genomics, transferase;
HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Length = 207
Score = 33.1 bits (75), Expect = 0.045
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
Query: 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS 169
++ S EGK V D+G+G G + +G +VI +E + V N+
Sbjct: 37 ELLWLAYSLGDIEGKVVADLGAGTGVLSYGAL-LLG-AKEVICVEVDKEAVDVLIENLGE 94
Query: 170 GNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 200
G+ K +GD + + DI+
Sbjct: 95 ------FKGKFKVFIGDVSE---FNSRVDIV 116
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding
motif, RNA binding protein; HET: SAM; 2.90A
{Archaeoglobus fulgidus} SCOP: c.66.1.3
Length = 210
Score = 32.6 bits (74), Expect = 0.056
Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 23/113 (20%)
Query: 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIP----QLVQRATH 165
AM+L +L ++VL +G+ +G + LA V G + +E+ +L++
Sbjct: 45 AMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRE 103
Query: 166 --NVISGNPEFVKDGRIKFVLGDGRK--GYLDEAPY-DIIHVGGSIEDIPEGI 213
N+I +L D K Y D+I+ + ++ E +
Sbjct: 104 RNNIIP-------------LLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEIL 143
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 32.7 bits (74), Expect = 0.071
Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 13/88 (14%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRATHNVISGNPEFVKD 177
+VLD+ G G + +L + G V ++ ++++ A + E
Sbjct: 54 RQHGCHRVLDVACGTGVDSIMLV----EEGFSVTSVDASDKMLKYALKERWNRRKEPA-- 107
Query: 178 GRIKFVLGDGRKGYLD-----EAPYDII 200
K+V+ + LD +D +
Sbjct: 108 -FDKWVIEEANWLTLDKDVPAGDGFDAV 134
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 32.5 bits (73), Expect = 0.075
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 126 VLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR--IKFV 183
+D+G+G+G LA + IGI+ + + + + K G + FV
Sbjct: 28 HIDLGTGDGRNIYKLA-INDQNTFYIGIDPVKENLFDI---SKKIIKKPSKGGLSNVVFV 83
Query: 184 LGDGRK 189
+
Sbjct: 84 IAAAES 89
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 32.3 bits (73), Expect = 0.078
Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 7/92 (7%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 178
T LD G+G G T L + + +V ++ + +A +
Sbjct: 76 NKTGTSCALDCGAGIGRITKRLLLPLFR--EVDMVDITEDFLVQAKTYLGEEGKR----- 128
Query: 179 RIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIP 210
+ + + YD+I + I +
Sbjct: 129 VRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLT 160
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 32.0 bits (72), Expect = 0.092
Identities = 10/81 (12%), Positives = 29/81 (35%), Gaps = 11/81 (13%)
Query: 114 DDLSEELTEGKK-VLDIGSGNGYFTALLAWCVGKTGKVIGIE----HIPQLVQRATHNVI 168
+ + ++ VLD+G+G+G +A V+ ++ + ++ +A
Sbjct: 18 AEFEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRL-VVALDADKSRMEKISAKAAAKPA 76
Query: 169 SGNPEFVKDGRIKFVLGDGRK 189
G + ++ +
Sbjct: 77 KGGLPN-----LLYLWATAER 92
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA,
2'-O-methylation, coiled-coil, methyltransfer binding,
rRNA processing; HET: SAM; 2.60A {Sulfolobus
solfataricus} PDB: 3id5_B* 3pla_E*
Length = 232
Score = 32.0 bits (72), Expect = 0.096
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQ 161
+ +G KVL +G+ +G + ++ + GK G+E P++V+
Sbjct: 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVR 115
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 31.9 bits (72), Expect = 0.12
Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 14/96 (14%)
Query: 107 FQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG--KVIGIEHIPQLVQRAT 164
++ + + + + K VLD+G G T +L+ K G KV+G++ L Q
Sbjct: 52 YRDFIYQN---PHIFKDKVVLDVGCG----TGILSMFAAKAGAKKVLGVDQSEILYQ--A 102
Query: 165 HNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 200
++I N + I + G + +L D+I
Sbjct: 103 MDIIRLNK---LEDTITLIKGKIEEVHLPVEKVDVI 135
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 31.3 bits (71), Expect = 0.12
Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 22/96 (22%)
Query: 113 LDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN------ 166
+D L E E K VLD+G+ G T L K V+ + + ++
Sbjct: 14 MDALEREGLEMKIVLDLGTSTGVITEQLR----KRNTVVSTDLNIRALESHRGGNLVRAD 69
Query: 167 -----------VISGNPEFVKDGRIKFVLGDGRKGY 191
V+ NP +V D ++G G G
Sbjct: 70 LLCSINQESVDVVVFNPPYVPDT-DDPIIGGGYLGR 104
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, regulator,
mRNA processing; 2.55A {Rattus norvegicus}
Length = 480
Score = 31.6 bits (71), Expect = 0.15
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 11/94 (11%)
Query: 107 FQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN 166
+Q+A++ + + K VLD+G G+G + A G K+ +E + Q A
Sbjct: 146 YQRAILQN---HTDFKDKIVLDVGCGSGIL-SFFAAQAGAR-KIYAVEAST-MAQHAEVL 199
Query: 167 VISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 200
V S N RI + G + L E DII
Sbjct: 200 VKSNN----LTDRIVVIPGKVEEVSLPE-QVDII 228
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target
base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET:
5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27
d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A*
2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Length = 421
Score = 31.5 bits (71), Expect = 0.16
Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 17/92 (18%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN------------ 166
E G +VL+ +G F G + +G+E P+ +
Sbjct: 36 EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWEP 95
Query: 167 -----VISGNPEFVKDGRIKFVLGDGRKGYLD 193
+I GNP + G K D
Sbjct: 96 GEAFDLILGNPPYGIVGEASKYPIHVFKAVKD 127
>1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics
hypothetical protein, structure 2 function project, S2F,
TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP:
c.66.1.14
Length = 244
Score = 31.4 bits (70), Expect = 0.18
Identities = 17/104 (16%), Positives = 38/104 (36%), Gaps = 5/104 (4%)
Query: 109 QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRATHNV 167
+ +T V D+G G T + + K+IGI++ +V+R ++
Sbjct: 45 ITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHI 104
Query: 168 ISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
+ + E ++ + D R + A I++ +
Sbjct: 105 AAYHSEI----PVEILCNDIRHVEIKNASMVILNFTLQFLPPED 144
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase,
SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus
delbrueckii subsp}
Length = 205
Score = 30.6 bits (70), Expect = 0.26
Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 13/93 (13%)
Query: 110 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG--KVIGIEHIPQLVQRATHNV 167
+ + + + + V D+G+G+G +LA K G V+ + + + A N
Sbjct: 48 QLAMLGIERAMVKPLTVADVGTGSG----ILAIAAHKLGAKSVLATDISDESMTAAEEN- 102
Query: 168 ISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 200
+ N + D I + +D+I
Sbjct: 103 AALNG--IYD--IALQKTSLLADV--DGKFDLI 129
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Length = 354
Score = 30.1 bits (68), Expect = 0.43
Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 8/100 (8%)
Query: 101 AHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLV 160
+ QA++ L++ G +VLD +G+G A +G T V + + +
Sbjct: 185 GSLTPVLAQALLR--LAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRL 241
Query: 161 QRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 200
A ++ I+F+ D R D I
Sbjct: 242 GLAREAALASGLS-----WIRFLRADARHLPRFFPEVDRI 276
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 29.8 bits (67), Expect = 0.45
Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 11/83 (13%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRATHNVISGNPEFVKD 177
K+L + G G LA G +V ++ + +A
Sbjct: 26 NQIPQGKILCLAEGEGRNACFLA----SLGYEVTAVDQSSVGLAKAKQLAQEKGV----- 76
Query: 178 GRIKFVLGDGRKGYLDEAPYDII 200
+I V + + ++ I
Sbjct: 77 -KITTVQSNLADFDIVADAWEGI 98
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification;
HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A*
3b3g_A 2v74_B* 2v7e_A
Length = 348
Score = 30.0 bits (67), Expect = 0.47
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 178
+ K VLD+G G+G + A G K+ +E + Q A V S N
Sbjct: 47 TDFKDKIVLDVGCGSGIL-SFFAAQAGAR-KIYAVEAST-MAQHAEVLVKSNN----LTD 99
Query: 179 RIKFVLGDGRKGYLDEAPYDII 200
RI + G + L E DII
Sbjct: 100 RIVVIPGKVEEVSLPE-QVDII 120
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine
methyltransferase, methylation; HET: SAH; 2.61A
{Arabidopsis thaliana}
Length = 376
Score = 30.2 bits (67), Expect = 0.49
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 15/96 (15%)
Query: 107 FQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG--KVIGIEHIPQLVQRAT 164
+ A+ + + EGK VLD+G+G+G +LA + G KV +E + A
Sbjct: 51 YFNAVFQN---KHHFEGKTVLDVGTGSG----ILAIWSAQAGARKVYAVEATK-MADHAR 102
Query: 165 HNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 200
V + N D ++ + G L E D+I
Sbjct: 103 ALVKANN----LDHIVEVIEGSVEDISLPE-KVDVI 133
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.49
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 50 EKKPMEYLVEHLKETLFIESELPYKAMLAVD 80
EK+ ++ L LK L+ + P A LA+
Sbjct: 18 EKQALKKLQASLK--LYADDSAP--A-LAIK 43
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral
enzyme structure; HET: SFG; 1.90A {Wesselsbron virus}
PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Length = 300
Score = 29.9 bits (67), Expect = 0.55
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 120 LTEGKKVLDIGSGNG---YFTALLAWCVGKTGKVIGIE--HIPQLVQRATHNVI 168
L +VLD+G G G Y+ A + G +GIE P +Q N++
Sbjct: 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIV 132
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine,
phosphorylation, M7G, spout MT, tRNA processing; HET:
SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Length = 246
Score = 29.7 bits (67), Expect = 0.58
Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 6/112 (5%)
Query: 81 RGHYTTWRPYANCITNIGYGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALL 140
R H + + + M + + ++T+ + DIG G G L
Sbjct: 10 RAHSNPFSDHQ--LEYPVSPQDMDWSKLYPYYKNAENGQMTKKVTIADIGCGFGGLMIDL 67
Query: 141 AWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR---IKFVLGDGRK 189
+ + ++G+E Q+ +I+ I + G+ K
Sbjct: 68 SPAFPEDL-ILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMK 118
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 29.6 bits (67), Expect = 0.59
Identities = 20/118 (16%), Positives = 32/118 (27%), Gaps = 26/118 (22%)
Query: 78 AVDRGHYTTWRPYANCITNIGYGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFT 137
A+ + M P Q L + ++ E KVLDI + +G F
Sbjct: 123 AISSEGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVNENKI--EPLKVLDISASHGLFG 180
Query: 138 ALLAWCVGKTGKVIGIEHIPQLVQRAT-----HNVISGNPEFVKD----GRIKFVLGD 186
+A +H P V+ E + R + G
Sbjct: 181 IAVA------------QHNPNA--EIFGVDWAS-VLEVAKENARIQGVASRYHTIAGS 223
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1;
mixed alpha beta fold, structural genomics, PSI; HET:
SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP:
c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Length = 287
Score = 29.4 bits (67), Expect = 0.70
Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 32/99 (32%)
Query: 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGI-------EHIPQLVQRATHNVISGN 171
L G +LD+G G G A + V K V+G+ H+ QLV + +
Sbjct: 62 LQPGMTLLDVGCGWG---ATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSEN------ 112
Query: 172 PEFVKDGRIKFVLGDGRKGYLDEAPYDII-------HVG 203
+ +L + DE P D I H G
Sbjct: 113 -----LRSKRVLLAGWEQ--FDE-PVDRIVSIGAFEHFG 143
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation,
transferase; HET: SAH TYD; 1.40A {Micromonospora
chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A*
4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Length = 416
Score = 29.6 bits (67), Expect = 0.72
Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 10/92 (10%)
Query: 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR 179
+++IG +G L + +G E + +A I +F
Sbjct: 105 TGPDPFIVEIGCNDGIM---LRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRTDF----- 156
Query: 180 IKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 211
F E P ++I+ ++ IP
Sbjct: 157 --FEKATADDVRRTEGPANVIYAANTLCHIPY 186
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Length = 349
Score = 29.3 bits (65), Expect = 0.82
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 14/96 (14%)
Query: 107 FQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG--KVIGIEHIPQLVQRAT 164
++ +M + L + K VLD+GSG T +L K G KVIGIE
Sbjct: 54 YRNSMFHN---RHLFKDKVVLDVGSG----TGILCMFAAKAGARKVIGIECSSISDYAV- 105
Query: 165 HNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 200
++ N D + + G + L DII
Sbjct: 106 -KIVKANK---LDHVVTIIKGKVEEVELPVEKVDII 137
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone
methyltransferase, nucleosome; HET: SAH; 2.20A
{Saccharomyces cerevisiae} SCOP: c.66.1.31
Length = 433
Score = 29.1 bits (64), Expect = 1.0
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 7/64 (10%)
Query: 106 PFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG--KVIGIEHIPQLVQRA 163
P + V +L +G +D+GSG G + + G G E +
Sbjct: 228 PNFLSDVYQQC--QLKKGDTFMDLGSGVG---NCVVQAALECGCALSFGCEIMDDASDLT 282
Query: 164 THNV 167
Sbjct: 283 ILQY 286
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural
genomics, PSI, protein structure initiative; 1.80A
{Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Length = 396
Score = 29.0 bits (65), Expect = 1.1
Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 107 FQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN 166
Q L + + G +VLD+ + G F + + +VIGI+ P+ ++ A N
Sbjct: 202 LDQRENRLALEKWVQPGDRVLDVFTYTGGFA--IHAAIAGADEVIGIDKSPRAIETAKEN 259
Query: 167 VISGNPEFVKDGRIKFVLGDGRKGYLDEA-----PYDII 200
+ R+KF++G + +++ +DI+
Sbjct: 260 AKLNGV----EDRMKFIVGSAFE-EMEKLQKKGEKFDIV 293
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast;
3.10A {Plasmodium falciparum}
Length = 456
Score = 29.1 bits (66), Expect = 1.2
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 13/67 (19%)
Query: 88 RPYANCITNIGYGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGN-GYFTALLAWCVGK 146
R A T GYG F + + L DL++ L E KK L GSGN + G
Sbjct: 214 RAEA---T--GYGVVY---FAENV-LKDLNDNL-ENKKCLVSGSGNVAQYLVEKLIEKG- 262
Query: 147 TGKVIGI 153
V+ +
Sbjct: 263 -AIVLTM 268
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent
methyltransferase fold, trans; HET: SAM; 2.00A
{Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB:
2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Length = 318
Score = 28.7 bits (65), Expect = 1.2
Identities = 20/99 (20%), Positives = 29/99 (29%), Gaps = 32/99 (32%)
Query: 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGI-------EHIPQLVQRATHNVISGN 171
L G +LDIG G G + V + VIG+ Q++
Sbjct: 88 LKPGMTLLDIGCGWG---TTMRRAVERFDVNVIGLTLSKNQHARCEQVLASI------DT 138
Query: 172 PEFVKDGRIKFVLGDGRKGYLDEAPYDII-------HVG 203
+ + +L E P D I H G
Sbjct: 139 -----NRSRQVLLQGWED--FAE-PVDRIVSIEAFEHFG 169
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin,
phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Length = 334
Score = 28.8 bits (65), Expect = 1.4
Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 30/95 (31%)
Query: 107 FQQAMVLDDLSEELT------EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLV 160
F AM +L+ G+ +D+G G+G T + + P
Sbjct: 146 FLLAMKASNLAFHEIPRLLDFRGRSFVDVGGGSGELTKAIL------------QAEPSA- 192
Query: 161 QRAT-----HNVISGNPEFVK----DGRIKFVLGD 186
R + + + R+ V GD
Sbjct: 193 -RGVMLDREG-SLGVARDNLSSLLAGERVSLVGGD 225
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces
cerevisiae}
Length = 1219
Score = 29.1 bits (65), Expect = 1.4
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 103 MQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHI 156
QAPF + + + L+ L G G A++A V + G I I
Sbjct: 502 DQAPFIPNVRDPKIPKILS-----LTCGQGRFGADAIIAVYVNRKGDFIRDYKI 550
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A
{Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB:
1hrd_A 1k89_A 1aup_A 2yfh_A
Length = 449
Score = 28.7 bits (65), Expect = 1.4
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 98 GYGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGN-GYFTALLAWCVGKTGKVIGI 153
GYG+ + +A+ + ++ L GK V G GN + A +G K + +
Sbjct: 210 GYGSVY---YVEAV-MKHENDTL-VGKTVALAGFGNVAWGAAKKLAELG--AKAVTL 259
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor
analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB:
1qan_A* 1qao_A* 1qaq_A* 2erc_A
Length = 244
Score = 28.2 bits (64), Expect = 1.6
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIE 154
L E + +IGSG G+FT L + V IE
Sbjct: 27 RLNEHDNIFEIGSGKGHFTLELV---QRCNFVTAIE 59
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces
cerevisiae}
Length = 1030
Score = 28.7 bits (64), Expect = 1.6
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 103 MQAPFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHI 156
QAPF + + + L+ L G G A++A V + G I I
Sbjct: 505 DQAPFIPNVRDPKIPKILS-----LTCGQGRFGADAIIAVYVNRKGDFIRDYKI 553
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand
complex, cytoplasm, lipid synthesis, methyltransferase;
HET: D22; 2.39A {Mycobacterium tuberculosis} PDB:
1kpi_A*
Length = 302
Score = 28.3 bits (64), Expect = 2.0
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGI 153
L G +LDIG G G + + V + VIG+
Sbjct: 70 LEPGMTLLDIGCGWG---STMRHAVAEYDVNVIGL 101
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Escherichia coli} SCOP: c.66.1.20
Length = 207
Score = 28.0 bits (63), Expect = 2.1
Identities = 7/24 (29%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 112 VLDDLS-EELTEGKKVLDIGSGNG 134
+LD + +G++ +D+G+G G
Sbjct: 54 ILDSIVVAPYLQGERFIDVGTGPG 77
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain,
beta-barrel, mixed alpha-beta, hexamer; 2.90A
{Saccharomyces cerevisiae} SCOP: c.66.1.6
Length = 328
Score = 28.1 bits (62), Expect = 2.1
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 14/82 (17%)
Query: 107 FQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG--KVIGIEHIPQLVQRAT 164
++ A++ + ++L + K VLD+G G G +L+ K G VIG++ +++ A
Sbjct: 26 YRNAIIQN---KDLFKDKIVLDVGCGTG----ILSMFAAKHGAKHVIGVDMSS-IIEMAK 77
Query: 165 HNVISGNPEFVKDGRIKFVLGD 186
V +I + G
Sbjct: 78 ELVELNG----FSDKITLLRGK 95
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research; 2.33A {Bacteroides vulgatus}
Length = 363
Score = 28.1 bits (63), Expect = 2.2
Identities = 9/75 (12%), Positives = 19/75 (25%), Gaps = 22/75 (29%)
Query: 120 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRAT----HNVISGNPEFV 175
K++LDIG G + ++ ++ T + +
Sbjct: 177 SHHPKRLLDIGGNTGKWATQCV------------QYNKEV--EVTIVDLPQQLEMMRKQT 222
Query: 176 KD----GRIKFVLGD 186
RI +
Sbjct: 223 AGLSGSERIHGHGAN 237
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold,
beta-barrel, symmetric arginine dimethylase, SAM
binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB:
3ua4_A
Length = 745
Score = 28.1 bits (61), Expect = 2.7
Identities = 17/113 (15%), Positives = 32/113 (28%), Gaps = 24/113 (21%)
Query: 107 FQQAM--VLDDLSEELTEGKKVLDIGSGNGYFT--ALLAWCVGKTG----------KVIG 152
+ +A+ L DL + + + +G G G L + K+
Sbjct: 392 YGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYI 451
Query: 153 IEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK-----GYLDEAPYDII 200
+E P + + + R+ + D R DII
Sbjct: 452 VEKNPNAIVTLKYMNVRT-----WKRRVTIIESDMRSLPGIAKDRGFEQPDII 499
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP:
c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A*
Length = 278
Score = 27.6 bits (61), Expect = 3.2
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 116 LSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFV 175
+++ + V+D+ +G G+ + +A V KVI IE P + N+
Sbjct: 119 MAKVAKPDELVVDMFAGIGHLSLPIA--VYGKAKVIAIEKDPYTFKFLVENIHLNKV--- 173
Query: 176 KDGRIKFVLGDGRKGYLDEAPYDIIHVG 203
+ R+ D R + E D I +G
Sbjct: 174 -EDRMSAYNMDNRD-FPGENIADRILMG 199
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus
pneumoniae} SCOP: c.66.1.24
Length = 245
Score = 27.5 bits (62), Expect = 3.2
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIE 154
L E V +IG+G G+ T LA + +V IE
Sbjct: 26 NLKETDTVYEIGTGKGHLTTKLA---KISKQVTSIE 58
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll,
BCHU, SAM, SAH, adenosylmethyonine,
S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium
tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Length = 359
Score = 27.7 bits (62), Expect = 3.2
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 30/96 (31%)
Query: 107 FQQAM------VLDDLSEE--LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQ 158
F++ + L EE L KK++D+G G G +A + +H P+
Sbjct: 167 FEEIHRSNAKFAIQLLLEEAKLDGVKKMIDVGGGIGDISAAML------------KHFPE 214
Query: 159 LVQRAT----HNVISGNPEFVKD----GRIKFVLGD 186
L +T I E + R++ + D
Sbjct: 215 L--DSTILNLPGAIDLVNENAAEKGVADRMRGIAVD 248
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem
adenosyl-L-methionine, rRNA, methyltransferase,
RNA-binding processing; HET: AMP; 1.60A
{Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A*
3gry_A* 3fyd_A 3fyc_A*
Length = 295
Score = 27.6 bits (62), Expect = 3.4
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIE 154
LT+ VL+IG G G T LA KV IE
Sbjct: 47 NLTKDDVVLEIGLGKGILTEELA---KNAKKVYVIE 79
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold
methyltransferase, tRNA modification,
S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A
{Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Length = 218
Score = 27.3 bits (61), Expect = 3.6
Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 14/71 (19%)
Query: 122 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIE-HIP---QLVQRATHNVISGNPEFVKD 177
E L+IG G G +A + +GIE H P + A +S N
Sbjct: 34 EAPVTLEIGFGMGASLVAMAKDRPEQD-FLGIEVHSPGVGACLASAHEEGLS-N------ 85
Query: 178 GRIKFVLGDGR 188
++ + D
Sbjct: 86 --LRVMCHDAV 94
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription
factor, transcription initiation; 2.60A {Saccharomyces
cerevisiae} SCOP: c.66.1.24
Length = 353
Score = 27.2 bits (60), Expect = 4.3
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 3/40 (7%)
Query: 122 EGKKVLDIGSGNGYFT-ALLAWCVGKTGKVIGIEHIPQLV 160
E KVLD+ G G + + +E L
Sbjct: 58 EELKVLDLYPGVGIQSAIFYN--KYCPRQYSLLEKRSSLY 95
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis,
oligomer organization, oxidoreductase; 2.7A {Plasmodium
falciparum}
Length = 470
Score = 26.9 bits (60), Expect = 5.7
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 8/57 (14%)
Query: 98 GYGAHMQAPFQQAMVLDDLSEELTEGKKVLDIGSGN-GYFTALLAWCVGKTGKVIGI 153
GYG + L L+ + E + + GSGN + + KV+ +
Sbjct: 232 GYGLVYFV---LEV-LKSLNIPV-EKQTAVVSGSGNVALYCVQKLLHLN--VKVLTL 281
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock
proteins, 23S ribosomal RNA; HET: SAM; 1.50A
{Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Length = 180
Score = 26.3 bits (59), Expect = 5.9
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 12/40 (30%)
Query: 120 LTEGKKVLDIGSGNGYFTALLAWC------VGKTGKVIGI 153
G V+D+G+ G W +G G++I
Sbjct: 20 FKPGMTVVDLGAAPG------GWSQYVVTQIGGKGRIIAC 53
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1,
S-adenosyl-L-methionine, tRNA Pro structural genomics,
structural genomics consortium, SGC; HET: SAM; 1.55A
{Homo sapiens}
Length = 235
Score = 26.6 bits (59), Expect = 6.1
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 126 VLDIGSGNGYFTALLA 141
DIG G G L+
Sbjct: 50 FADIGCGYGGLLVELS 65
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 26.6 bits (59), Expect = 6.7
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 6/35 (17%)
Query: 113 LDDLSEELTE------GKKVLDIGSGNGYFTALLA 141
LD S+ L KVLD+G G G + A
Sbjct: 181 LDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFA 215
>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC
transporter, transport protein; HET: TPS; 2.25A
{Escherichia coli}
Length = 330
Score = 26.4 bits (58), Expect = 7.6
Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 2/96 (2%)
Query: 53 PMEYLVEHLKETLFIESELPYKAMLAVDRGHYTTWRPYANCITNIGYGAHMQAPFQQAMV 112
L K LF +S + A+ + T+ P+ Y + Q+
Sbjct: 86 DNNLLDAASKTGLFAKSGVAADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQS-- 143
Query: 113 LDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG 148
L +L E + + + LL W G
Sbjct: 144 LKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYG 179
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate,
tailoring enzyme, polyketide, S-adenosyl-L-homocystein;
HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP:
a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Length = 360
Score = 26.1 bits (58), Expect = 8.2
Identities = 24/150 (16%), Positives = 42/150 (28%), Gaps = 46/150 (30%)
Query: 69 SELPYKAMLAVDRGHYTTWRPYANCIT------NIGYGAHM----------QAPFQQAM- 111
++ + + ++ + I YG +A F +
Sbjct: 106 AQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLA 165
Query: 112 -----VLDDLSEE--LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRAT 164
D + T + VLD+G G G F A +A P + AT
Sbjct: 166 CDQDVAFDAPAAAYDWTNVRHVLDVGGGKGGFAAAIA------------RRAPHV--SAT 211
Query: 165 ----HNVISGNPEFVK----DGRIKFVLGD 186
+ ++K R+ V GD
Sbjct: 212 VLEMAGTVDTARSYLKDEGLSDRVDVVEGD 241
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics,
structural genomics consortium; HET: SAM; 1.90A {Homo
sapiens} SCOP: c.66.1.24
Length = 285
Score = 26.1 bits (58), Expect = 8.6
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 7/57 (12%)
Query: 119 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEH----IPQLVQRATHNVISGN 171
L VL++G G G T L K KV+ E + +L +R ++
Sbjct: 25 ALRPTDVVLEVGPGTGNMTVKLL---EKAKKVVACELDPRLVAELHKRVQGTPVASK 78
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis,
translation, class I tRNA synth rossman fold, high
motif, KMSKS motif; 2.80A {Bacillus subtilis}
Length = 388
Score = 26.1 bits (58), Expect = 9.2
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 10/42 (23%)
Query: 62 KETLFIESELPYKAMLAVDRGHYTTWRPYANCITNIGYGAHM 103
K TLFI+SE+P A W C+ IG M
Sbjct: 108 KATLFIQSEVPAHAQAG--------W--MMQCVAYIGELERM 139
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.140 0.435
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,506,755
Number of extensions: 213101
Number of successful extensions: 737
Number of sequences better than 10.0: 1
Number of HSP's gapped: 683
Number of HSP's successfully gapped: 191
Length of query: 213
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 123
Effective length of database: 4,188,903
Effective search space: 515235069
Effective search space used: 515235069
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)