BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7827
(140 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S-
Adenosyl Homocysteine
pdb|1KR5|A Chain A, Crystal Structure Of Human L-Isoaspartyl Methyltransferase
Length = 226
Score = 94.0 bits (232), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 72/120 (60%), Gaps = 5/120 (4%)
Query: 20 IKSPRVIDAMIHIDRGHFCAHNDSRKYMLAARDIGYGSIIDNPVQHAEVLELLKDKLVPG 79
IK+ +V + M+ DR H+ N YM + + IG+ + I P HA LELL D+L G
Sbjct: 22 IKTDKVFEVMLATDRSHYAKCN---PYMDSPQSIGFQATISAPHMHAYALELLFDQLHEG 78
Query: 80 AKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTTLHYPKL--NKRIKFI 137
AK LDVGSGSG LT CFA MVG G V+G++HI E+V+ + N P L + R++ +
Sbjct: 79 AKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLV 138
>pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With
S-Adenosyl-L- Homocysteine
Length = 227
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 66/126 (52%), Gaps = 9/126 (7%)
Query: 20 IKSPRVIDAMIHIDRGHFCAHNDSRKYMLAARDIGYGSIIDNPVQHAEVLELLKDKLVPG 79
I S V AM DR H+ N YM A + IG G I P HA LE L+D L PG
Sbjct: 29 IASDAVAQAMKETDRKHYSPRN---PYMDAPQPIGGGVTISAPHMHAFALEYLRDHLKPG 85
Query: 80 AKVLDVGSGSGYLTTCF-----AHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKR 133
A++LDVGSGSGYLT CF A V + +VG+EH E+V + +N+ T L+
Sbjct: 86 ARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSG 145
Query: 134 IKFICE 139
I E
Sbjct: 146 QLLIVE 151
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 20 IKSPRVIDAMIHIDRGHFCA-HNDSRKYMLAARDIGYGSIIDNPVQHAEVLELLKDKLVP 78
IKS RVIDA++ + R F H Y+ +IGYG I + ELL L P
Sbjct: 20 IKSKRVIDALLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIHMVGMMCELLD--LKP 77
Query: 79 GAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASN 121
G KVL++G+G GY A +VG++G VV +E IPE+ A
Sbjct: 78 GMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAER 120
>pdb|2PBF|A Chain A, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
pdb|2PBF|B Chain B, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
Length = 227
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 7/112 (6%)
Query: 25 VIDAMIHIDRGHFCAHNDSRKYMLAARDIGYGSIIDNPVQHAEVLELLKDKLVPGAKVLD 84
V + M+ +DRG + Y+ I +G I P HA L+ L + L PG++ +D
Sbjct: 30 VYNTMLQVDRGKYIKE---IPYIDTPVYISHGVTISAPHMHALSLKRLINVLKPGSRAID 86
Query: 85 VGSGSGYLTTCFA----HMVGKNGSVVGVEHIPEIVNHASNVTTLHYPKLNK 132
VGSGSGYLT C A + KN V+G+E + ++VN + P+L K
Sbjct: 87 VGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLK 138
>pdb|3LBF|A Chain A, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|B Chain B, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|C Chain C, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|D Chain D, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
Length = 210
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 18 DSIKSPRVIDAMIHIDRGHFCAHN-DSRKYMLAARDIGYGSIIDNPVQHAEVLELLKDKL 76
I+ +V++A+ + R F + + + A IG G I P A + ELL+ L
Sbjct: 18 QGIQDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARMTELLE--L 75
Query: 77 VPGAKVLDVGSGSGYLTTCFAHMV 100
P ++VL++G+GSGY T AH+V
Sbjct: 76 TPQSRVLEIGTGSGYQTAILAHLV 99
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
L G VLDVG+G+G+ + MVG+ G V ++ E+VN+A
Sbjct: 35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYA 78
>pdb|1I9G|A Chain A, Crystal Structure Of An Adomet Dependent Methyltransferase
Length = 280
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLH-YPKLNKR 133
+ PGA+VL+ G+GSG LT VG G V+ E + HA NV+ + P N R
Sbjct: 97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWR 156
Query: 134 I 134
+
Sbjct: 157 L 157
>pdb|2PWY|A Chain A, Crystal Structure Of A M1a58 Trna Methyltransferase
pdb|2PWY|B Chain B, Crystal Structure Of A M1a58 Trna Methyltransferase
Length = 258
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASN 121
L PG +VL+ G+GSG LT A VG+ G V E P + A
Sbjct: 94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAER 139
>pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosylmethionine
pdb|1JG3|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG3|B Chain B, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG2|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With Adenosine
pdb|1JG1|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosyl-L-Homocysteine
Length = 235
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 7/120 (5%)
Query: 4 YKIFMVPTDYIVEIDSIKSPRVIDAMIHIDRGHFCAHNDSRKY--MLAARDIGYGSIIDN 61
Y+ +M + + I+S V A + R + + +KY + I G +
Sbjct: 18 YEKWMRTVEMLKAEGIIRSKEVERAFLKYPR-YLSVEDKYKKYAHIDEPLPIPAGQTVSA 76
Query: 62 PVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASN 121
P A +LE+ L PG +L+VG+GSG+ + +V + V +E IPE+V A
Sbjct: 77 PHMVAIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVKTD--VYTIERIPELVEFAKR 132
>pdb|3BKX|A Chain A, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
pdb|3BKX|B Chain B, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
Length = 275
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 75 KLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVE 110
++ PG K+L++G G G L+ A VG +G V G++
Sbjct: 40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGID 75
>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase
pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransferase
Length = 317
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 15/128 (11%)
Query: 5 KIFMVPTDYIVEIDSIKSPRVIDAMIHIDRGHFCAHNDSRKYM-----LAARDIGYG-SI 58
K+F + Y V S + A + I R F + Y+ L + D G S
Sbjct: 4 KLFWILKKYGV------SDHIAKAFLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYST 57
Query: 59 IDNPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNH 118
P A +E + L G +VL++G G+GY + +VG+ G VV VE+ +I
Sbjct: 58 SSQPSLMALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEI 115
Query: 119 AS-NVTTL 125
A NV L
Sbjct: 116 AKRNVERL 123
>pdb|1VBF|A Chain A, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|B Chain B, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|C Chain C, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|D Chain D, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
Length = 231
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 20/119 (16%)
Query: 17 IDSIKSPRVIDAMIHIDRGHFCAHNDSRKYMLAARDIGYGSI---------IDNPVQHAE 67
+ IK+ + +A +DR F N +D Y I+ +
Sbjct: 8 LRKIKTQELAEAFNKVDRSLFLPEN--------LKDYAYAHTHEALPILPGINTTALNLG 59
Query: 68 VLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTTLH 126
+ L + L G KVL++G+G GY T A +V K VV VE + N+AS + + +
Sbjct: 60 IFXLDELDLHKGQKVLEIGTGIGYYTALIAEIVDK---VVSVEINEKXYNYASKLLSYY 115
>pdb|2ZUL|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533) In Complex With
Cofactor S-Adenosyl-L-Methionine
pdb|2ZWV|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533)
Length = 375
Score = 33.9 bits (76), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 7/47 (14%)
Query: 68 VLELLKDKLVP----GAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVE 110
+LE L+++L P G +VLD+G+G G LT A M VVGVE
Sbjct: 219 LLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM---GAEVVGVE 262
>pdb|3DMF|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet
pdb|3DMG|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adohcy
pdb|3DMH|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet And Guanosine
Length = 381
Score = 33.9 bits (76), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 7/47 (14%)
Query: 68 VLELLKDKLVP----GAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVE 110
+LE L+++L P G +VLD+G+G G LT A M VVGVE
Sbjct: 219 LLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM---GAEVVGVE 262
>pdb|4FR0|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With Sam
pdb|4FS8|A Chain A, The Structure Of An As(Iii) S-Adenosylmethionine
Methyltransferase: Insights Into The Mechanism Of
Arsenic Biotransformation
pdb|4FSD|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With As(Iii)
Length = 383
Score = 33.5 bits (75), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 71 LLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTTLHYPKL 130
L D + GA VLD+G G+G + +VG++G V+GV+ + + A H K
Sbjct: 76 LPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKF 135
>pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|C Chain C, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|E Chain E, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|G Chain G, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|I Chain I, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|K Chain K, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|M Chain M, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|O Chain O, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
Length = 254
Score = 32.7 bits (73), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 65 HAE----VLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHAS 120
HAE L+ L L PG KVLD+G+GSG L + GK +GV+ P ++ A
Sbjct: 103 HAETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGK---ALGVDIDPMVLPQAE 159
>pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
Length = 253
Score = 32.7 bits (73), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 23/92 (25%)
Query: 19 SIKSPRVIDAMIHIDRGHFCAHNDSRKYMLAARDIGYGSIIDNPVQHAEVLELLKDKLVP 78
I PR++D + + RG H AA + Y I P
Sbjct: 57 KILRPRIVDYLDKMKRGPQIVHPKD-----AALIVAYAGI------------------SP 93
Query: 79 GAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVE 110
G +++ G GSG LT A++VG G VV E
Sbjct: 94 GDFIVEAGVGSGALTLFLANIVGPEGRVVSYE 125
>pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Methionine
Length = 255
Score = 32.7 bits (73), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 23/92 (25%)
Query: 19 SIKSPRVIDAMIHIDRGHFCAHNDSRKYMLAARDIGYGSIIDNPVQHAEVLELLKDKLVP 78
I PR++D + + RG H AA + Y I P
Sbjct: 57 KILRPRIVDYLDKMKRGPQIVHPKD-----AALIVAYAGI------------------SP 93
Query: 79 GAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVE 110
G +++ G GSG LT A++VG G VV E
Sbjct: 94 GDFIVEAGVGSGALTLFLANIVGPEGRVVSYE 125
>pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase
(Tm0748) From Thermotoga Maritima At 1.65 A Resolution
Length = 277
Score = 32.7 bits (73), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 79 GAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVT 123
G +++D G GSG + A VG +G V E E A SN+T
Sbjct: 113 GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLT 158
>pdb|1UFK|A Chain A, Crystal Structure Of Tt0836
pdb|2NXE|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXE|B Chain B, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXJ|A Chain A, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXJ|B Chain B, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXN|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With Ribosomal Protein L11
pdb|2NXC|A Chain A, Apo-Form Of T. Thermophilus Ribosomal Protein L11
Methyltransferase (Prma)
pdb|3CJQ|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|D Chain D, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|G Chain G, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJR|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Ribosomal Protein L11 (k39a) And Inhibitor
Sinefungin.
pdb|3EGV|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Trimethylated Ribosomal Protein L11
pdb|2ZBP|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Methionine
pdb|2ZBQ|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Homocysteine
pdb|2ZBR|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-adenosyl-ornithine
Length = 254
Score = 32.3 bits (72), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 68 VLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHAS 120
L+ L L PG KVLD+G+GSG L + GK +GV+ P ++ A
Sbjct: 110 ALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGK---ALGVDIDPMVLPQAE 159
>pdb|2B25|A Chain A, Human Putative Trna(1-Methyladenosine)methyltransferase
pdb|2B25|B Chain B, Human Putative Trna(1-Methyladenosine)methyltransferase
Length = 336
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVE 110
PG VL+ GSGSG ++ + VG G V+ E
Sbjct: 105 PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFE 137
>pdb|1G8A|A Chain A, Pyrococcus Horikoshii Fibrillarin Pre-Rrna Processing
Protein
Length = 227
Score = 30.0 bits (66), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNH 118
PG VL +G SG + + +VG G + G+E P ++
Sbjct: 73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRE 113
>pdb|2IPX|A Chain A, Human Fibrillarin
Length = 233
Score = 30.0 bits (66), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVE 110
PGAKVL +G+ SG + + +VG +G V VE
Sbjct: 77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVE 109
>pdb|1PRY|A Chain A, Structure Determination Of Fibrillarin Homologue From
Hyperthermophilic Archaeon Pyrococcus Furiosus
(Pfu-65527)
Length = 227
Score = 29.6 bits (65), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNH 118
PG VL +G SG + + +VG G + G+E P ++
Sbjct: 73 PGKSVLYLGIASGTTASHVSDIVGWEGKIYGIEFSPRVLRE 113
>pdb|2NNW|B Chain B, Alternative Conformations Of Nop56/58-fibrillarin Complex
And Implication For Induced-fit Assenly Of Box C/d Rnps
pdb|2NNW|D Chain D, Alternative Conformations Of Nop56/58-fibrillarin Complex
And Implication For Induced-fit Assenly Of Box C/d Rnps
pdb|3NMU|F Chain F, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NMU|J Chain J, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NVK|I Chain I, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
pdb|3NVK|J Chain J, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
pdb|3NVM|B Chain B, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
Length = 234
Score = 29.6 bits (65), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNH 118
PG VL +G SG + + +VG G + G+E P ++
Sbjct: 80 PGKSVLYLGIASGTTASHVSDIVGWEGKIYGIEFSPRVLRE 120
>pdb|3ID5|B Chain B, Crystal Structure Of Sulfolobus Solfataricus CD RNP
ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
CD RNA
pdb|3ID5|F Chain F, Crystal Structure Of Sulfolobus Solfataricus CD RNP
ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
CD RNA
pdb|3ID6|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Nop5 (1-262)
And Fibrillarin Complex
pdb|3PLA|E Chain E, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
pdb|3PLA|F Chain F, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
pdb|3PLA|M Chain M, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
Length = 232
Score = 29.6 bits (65), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 79 GAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNH 118
G KVL +G+ SG + + ++ NG GVE P +V
Sbjct: 77 GTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRE 116
>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|B Chain B, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|C Chain C, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
Length = 239
Score = 29.3 bits (64), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 77 VPGAK-VLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
+ GAK ++++G+ +GY + CFA + ++G ++ + E N A
Sbjct: 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVA 101
>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
Length = 211
Score = 29.3 bits (64), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 66 AEVLELLKDKLVPGAKVLDVGSGSGYL--TTCFAHMVGKNGS----VVGVEHIPEIVNHA 119
AE LK L PG +L+VG+G+GY + VG S VG PE
Sbjct: 24 AEEERALKGLLPPGESLLEVGAGTGYWLRRLPYPQKVGVEPSEAXLAVGRRRAPEATWVR 83
Query: 120 SNVTTLHYP 128
+ L +P
Sbjct: 84 AWGEALPFP 92
>pdb|1NKV|A Chain A, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
pdb|1NKV|B Chain B, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
pdb|1NKV|C Chain C, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
Length = 256
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 59 IDNPV---QHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGS 105
I NP ++A + +L+ K PG ++LD+GSGSG +A G G+
Sbjct: 16 IHNPFTEEKYATLGRVLRXK--PGTRILDLGSGSGEXLCTWARDHGITGT 63
>pdb|1P91|A Chain A, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
pdb|1P91|B Chain B, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
Length = 269
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 15/68 (22%)
Query: 66 AEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTTL 125
A++ E L DK VLD+G G GY T FA + +PEI +V+ +
Sbjct: 76 AQLRERLDDK---ATAVLDIGCGEGYYTHAFA------------DALPEITTFGLDVSKV 120
Query: 126 HYPKLNKR 133
KR
Sbjct: 121 AIKAAAKR 128
>pdb|3EEY|A Chain A, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|B Chain B, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|C Chain C, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|D Chain D, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|E Chain E, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|F Chain F, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|G Chain G, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|H Chain H, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|I Chain I, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|J Chain J, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
Length = 197
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 79 GAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVE-HIPEIVNHASNVTTLH 126
G V+D G+G T A +VG+NG V G + I N +T L+
Sbjct: 23 GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN 71
>pdb|3RIM|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
Length = 700
Score = 28.5 bits (62), Expect = 1.4, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 73 KDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHAS 120
+D ++P V +G + C+ +VG G +V +EH E +H +
Sbjct: 632 RDAVLPPTVSARVAVEAG-VAQCWHQLVGDTGEIVSIEHYGESADHKT 678
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 67 EVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTL 125
++L+LL + PG +LD+G G+G LT A V+G ++ + A N L
Sbjct: 48 DLLQLLNPQ--PGEFILDLGCGTGQLTEKIAQ---SGAEVLGTDNAATXIEKARQNYPHL 102
Query: 126 HYPKLNKR 133
H+ + R
Sbjct: 103 HFDVADAR 110
>pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Target Btr309
Length = 257
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 74 DKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIV 116
++L AK+ D+G G+G T A V G + G++ P+ +
Sbjct: 42 NELTDDAKIADIGCGTGGQTLFLADYV--KGQITGIDLFPDFI 82
>pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SVZ|B Chain B, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SXJ|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3SXJ|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
Length = 263
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 74 DKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIV 116
++L AK+ D+G G+G T A V G + G++ P+ +
Sbjct: 48 NELTDDAKIADIGCGTGGQTLFLADYV--KGQITGIDLFPDFI 88
>pdb|3BXO|A Chain A, Crystal Structure Of Streptomyces Venezuelae Desvi
pdb|3BXO|B Chain B, Crystal Structure Of Streptomyces Venezuelae Desvi
Length = 239
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 60 DNPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
D + +++ +L++ + + +LDV G+G T H + G G+E +++ HA
Sbjct: 22 DYAAEASDIADLVRSRTPEASSLLDVACGTG---THLEHFTKEFGDTAGLELSEDMLTHA 78
>pdb|3T5Y|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae -
Malonic Acid Covalently Linked To The Catalytic Cystein
C116
pdb|3T6S|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae In
Complex With Coa
pdb|3T8E|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae Soaked
With Cervik
pdb|3T8E|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae Soaked
With Cervik
Length = 357
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 42 DSRKYMLAARDIGYGSIIDNPVQHAEVLELLKDKLV-PGAKVLDVGSGSGYLTTCFAHMV 100
D R R G+ D Q+A + L+++ LV PG +VL G G+GY TC A +V
Sbjct: 282 DERTSWAYGRTTGHVGAGD---QYAGLAHLVENALVQPGDRVLLFGGGAGY--TCTAAVV 336
>pdb|3S3L|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae
pdb|3S3L|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae
pdb|3T5Y|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae -
Malonic Acid Covalently Linked To The Catalytic Cystein
C116
pdb|3T6S|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae In
Complex With Coa
Length = 357
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 42 DSRKYMLAARDIGYGSIIDNPVQHAEVLELLKDKLV-PGAKVLDVGSGSGYLTTCFAHMV 100
D R R G+ D Q+A + L+++ LV PG +VL G G+GY TC A +V
Sbjct: 282 DERTSWAYGRTTGHVGAGD---QYAGLAHLVENALVQPGDRVLLFGGGAGY--TCTAAVV 336
>pdb|2PJD|A Chain A, Crystal Structure Of 16s Rrna Methyltransferase Rsmc
Length = 343
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 70 ELLKDKLVP--GAKVLDVGSGSGYLTTCFAH 98
+LL L P KVLDVG G+G L+ FA
Sbjct: 186 QLLLSTLTPHTKGKVLDVGCGAGVLSVAFAR 216
>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii
Length = 225
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 64 QHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVV 107
+ A++L LL KL KV+D+G+ +GY + K+G+++
Sbjct: 51 EQAQLLALLV-KLXQAKKVIDIGTFTGYSAIAXGLALPKDGTLI 93
>pdb|1NE2|A Chain A, Crystal Structure Of Thermoplasma Acidophilum 1320
(Apc5513)
pdb|1NE2|B Chain B, Crystal Structure Of Thermoplasma Acidophilum 1320
(Apc5513)
Length = 200
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 68 VLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
++E+ D + G V+D G+G+G L C ++++G SV + P+ + A
Sbjct: 41 LIEIYNDGNIGGRSVIDAGTGNGIL-ACGSYLLGAE-SVTAFDIDPDAIETA 90
>pdb|1J9Z|A Chain A, Cypor-W677g
pdb|1J9Z|B Chain B, Cypor-W677g
Length = 622
Score = 26.9 bits (58), Expect = 3.4, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 29 MIHIDRGHFCAHNDSRKYMLAARDIGYGSIID-NPVQHAEVLELLKDKLVPGAKVLDVGS 87
+IH H D+R ++ Y + + P++H + ++ +K + G LDVGS
Sbjct: 563 LIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLDVGS 622
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 44 RKYMLAARDIGYGSIIDNPVQHAEVLELLKDKLVPGAKVL 83
++Y L A ++GY I NP+ A LE + ++ G +L
Sbjct: 173 KQYSLPAGEVGYPGGIFNPLNFAPTLEAKEKEIANGRLML 212
>pdb|2TMG|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|B Chain B, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|C Chain C, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|D Chain D, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|E Chain E, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|F Chain F, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
Length = 415
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 14/99 (14%)
Query: 55 YGSIIDNP----VQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNG------ 104
+G+++ P + + E+LEL D LVP A + +G+ A + G NG
Sbjct: 264 HGTVVTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIKAKAVVEGANGPTTPEA 323
Query: 105 ----SVVGVEHIPEIVNHASNVTTLHYPKLNKRIKFICE 139
S G+ +P+I+ +A VT ++ + F +
Sbjct: 324 DEILSRRGILVVPDILANAGGVTVSYFEWVQDLQSFFWD 362
>pdb|1B3B|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|B Chain B, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|C Chain C, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|D Chain D, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|E Chain E, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|F Chain F, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
Length = 415
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 14/99 (14%)
Query: 55 YGSIIDNP----VQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNG------ 104
+G+++ P + + E+LEL D LVP A + +G+ A + G NG
Sbjct: 264 HGTVVTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIKAKAVVEGANGPTTPEA 323
Query: 105 ----SVVGVEHIPEIVNHASNVTTLHYPKLNKRIKFICE 139
S G+ +P+I+ +A VT ++ + F +
Sbjct: 324 DEILSRRGILVVPDILANAGGVTVSYFEWVQDLQSFFWD 362
>pdb|1B26|A Chain A, Glutamate Dehydrogenase
pdb|1B26|B Chain B, Glutamate Dehydrogenase
pdb|1B26|C Chain C, Glutamate Dehydrogenase
pdb|1B26|D Chain D, Glutamate Dehydrogenase
pdb|1B26|E Chain E, Glutamate Dehydrogenase
pdb|1B26|F Chain F, Glutamate Dehydrogenase
Length = 416
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 14/99 (14%)
Query: 55 YGSIIDNP----VQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNG------ 104
+G+++ P + + E+LEL D LVP A + +G+ A + G NG
Sbjct: 265 HGTVVTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIKAKAVVEGANGPTTPEA 324
Query: 105 ----SVVGVEHIPEIVNHASNVTTLHYPKLNKRIKFICE 139
S G+ +P+I+ +A VT ++ + F +
Sbjct: 325 DEILSRRGILVVPDILANAGGVTVSYFEWVQDLQSFFWD 363
>pdb|3D2L|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|C Chain C, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|D Chain D, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
Length = 243
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 63 VQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNV 122
V + E + + +++ PG ++ D+G G+G T A G + E + EI +
Sbjct: 18 VPYPEWVAWVLEQVEPGKRIADIGCGTGTATLLLADHYEVTGVDLSEEXL-EIAQEKAXE 76
Query: 123 TTLH 126
T H
Sbjct: 77 TNRH 80
>pdb|2XVA|A Chain A, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVA|B Chain B, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVA|C Chain C, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVA|D Chain D, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVM|A Chain A, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sah
pdb|2XVM|B Chain B, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sah
Length = 199
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 65 HAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFA------HMVGKNG-SVVGVEHIPEIVN 117
H+EVLE +K +V K LD+G G+G + A KN S+ VE I I N
Sbjct: 21 HSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIEN 78
>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 353
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
Query: 71 LLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVE 110
L KDK+V LDVGSG+G L FA G V+G+E
Sbjct: 68 LFKDKVV-----LDVGSGTGILCM-FAAKAGAR-KVIGIE 100
>pdb|4DQ0|A Chain A, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
pdb|4DQ0|B Chain B, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
pdb|4DQ0|C Chain C, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
pdb|4DQ0|D Chain D, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
Length = 200
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 65 HAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFA------HMVGKNG-SVVGVEHIPEIVN 117
H+EVLE +K +V K LD+G G+G + A KN S+ VE I I N
Sbjct: 22 HSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIEN 79
>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 343
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
Query: 71 LLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVE 110
L KDK+V LDVGSG+G L FA G V+G+E
Sbjct: 58 LFKDKVV-----LDVGSGTGILCM-FAAKAGAR-KVIGIE 90
>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 340
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
Query: 71 LLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVE 110
L KDK+V LDVGSG+G L FA G V+G+E
Sbjct: 55 LFKDKVV-----LDVGSGTGILCM-FAAKAGAR-KVIGIE 87
>pdb|1YB2|A Chain A, Structure Of A Putative Methyltransferase From
Thermoplasma Acidophilum
Length = 275
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTTLHYPKLNKR 133
L PG +L+VG GSG ++ + + G++ VE + + A + + Y N R
Sbjct: 108 LRPGXDILEVGVGSGNXSSYILYALNGKGTLTVVERDEDNLKKAXDNLSEFYDIGNVR 165
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 166
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 44 RKYMLAARDIGYGSIIDNPVQHAEVLELLKDKLVPGAKVL 83
++Y L A ++GY I NP+ A LE + ++ G +L
Sbjct: 93 KQYSLPAGEVGYPGGIFNPLNFAPTLEAKEKEIANGRLML 132
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 81 KVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASN 121
+VLD+G+G+G+ F+ V + +GV+ E V AS+
Sbjct: 24 RVLDIGAGAGHTALAFSPYVQE---CIGVDATKEXVEVASS 61
>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine
Methyltransferase 1 (Prmt1) M48l Mutant
Length = 349
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
Query: 71 LLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVE 110
L KDK+V LDVGSG+G L FA G V+G+E
Sbjct: 64 LFKDKVV-----LDVGSGTGILCM-FAAKAGAR-KVIGIE 96
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 64 QHAEVLE-LLKDKLV--PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHAS 120
+ AE LE LL V PGAKVL+ G G G T A + + ++ PE + A
Sbjct: 20 EQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKN-NPDAEITSIDISPESLEKAR 78
Query: 121 NVT 123
T
Sbjct: 79 ENT 81
>pdb|3G07|A Chain A, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|B Chain B, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|C Chain C, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|D Chain D, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|E Chain E, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|F Chain F, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
Length = 292
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 61 NPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHAS 120
NP L +LK + G VLD+G G+LT A G + VG++ I + H++
Sbjct: 29 NPSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPS-RXVGLD-IDSRLIHSA 86
Query: 121 NVTTLHY 127
HY
Sbjct: 87 RQNIRHY 93
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 26.2 bits (56), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 44 RKYMLAARDIGYGSIIDNPVQHAEVLELLKDKLVPG 79
++Y L A ++GY I NP+ A LE + ++ G
Sbjct: 89 KQYSLPAGEVGYPGGIFNPLNFAPTLEAKEKEIANG 124
>pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X38|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X39|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
Length = 602
Score = 26.2 bits (56), Expect = 6.7, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 87 SGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTTLHYP 128
+G + C H VG G+V G+ I+N + +H P
Sbjct: 196 AGKNKVAACAKHFVGDGGTVDGINENNTIINR-EGLMNIHMP 236
>pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley
pdb|1IEX|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
4i,4iii,4v-S-Trithiocellohexaose
pdb|1IEW|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
2-Deoxy-2-Fluoro-Alpha-D-Glucoside
pdb|1IEV|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Cyclohexitol
pdb|1IEQ|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1
pdb|1J8V|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With 4'-Nitrophenyl
3i-Thiolaminaritrioside
Length = 605
Score = 26.2 bits (56), Expect = 7.0, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 87 SGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTTLHYP 128
+G + C H VG G+V G+ I+N + +H P
Sbjct: 196 AGKNKVAACAKHFVGDGGTVDGINENNTIINR-EGLMNIHMP 236
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,433,570
Number of Sequences: 62578
Number of extensions: 180554
Number of successful extensions: 575
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 535
Number of HSP's gapped (non-prelim): 63
length of query: 140
length of database: 14,973,337
effective HSP length: 89
effective length of query: 51
effective length of database: 9,403,895
effective search space: 479598645
effective search space used: 479598645
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)