Query psy7827
Match_columns 140
No_of_seqs 238 out of 1698
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 19:53:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01135 PCMT: Protein-L-isoas 99.9 1.1E-24 2.3E-29 155.6 10.0 127 5-139 2-130 (209)
2 PRK13944 protein-L-isoaspartat 99.9 2.6E-23 5.5E-28 148.4 11.8 128 5-139 2-131 (205)
3 PRK13942 protein-L-isoaspartat 99.9 2.6E-23 5.7E-28 149.1 11.8 129 3-139 4-134 (212)
4 COG2518 Pcm Protein-L-isoaspar 99.9 2.2E-23 4.9E-28 147.1 11.0 122 7-139 4-127 (209)
5 TIGR00080 pimt protein-L-isoas 99.9 1.1E-22 2.4E-27 146.1 12.0 126 5-138 7-134 (215)
6 PRK00312 pcm protein-L-isoaspa 99.8 7.7E-20 1.7E-24 130.9 11.0 122 5-138 9-132 (212)
7 PRK13943 protein-L-isoaspartat 99.8 2.8E-19 6.1E-24 135.0 11.4 124 5-138 7-137 (322)
8 KOG1661|consensus 99.7 6.3E-17 1.4E-21 113.8 8.5 117 8-126 13-132 (237)
9 PF12847 Methyltransf_18: Meth 99.5 4.6E-13 9.9E-18 86.2 8.5 58 78-139 1-59 (112)
10 COG2242 CobL Precorrin-6B meth 99.4 3.2E-12 7E-17 89.0 10.0 76 57-139 15-91 (187)
11 COG2226 UbiE Methylase involve 99.4 1.6E-12 3.5E-17 94.4 8.6 71 62-139 37-108 (238)
12 PF01209 Ubie_methyltran: ubiE 99.4 8.7E-13 1.9E-17 95.9 6.6 70 64-139 35-105 (233)
13 PF13847 Methyltransf_31: Meth 99.3 5.6E-12 1.2E-16 85.7 8.3 59 77-139 2-61 (152)
14 COG2230 Cfa Cyclopropane fatty 99.3 6.3E-12 1.4E-16 93.0 7.8 65 65-136 61-126 (283)
15 PRK07402 precorrin-6B methylas 99.3 1.7E-11 3.8E-16 86.7 9.8 74 58-138 22-96 (196)
16 PRK08287 cobalt-precorrin-6Y C 99.3 2.4E-11 5.2E-16 85.4 9.9 74 59-139 14-88 (187)
17 PRK15451 tRNA cmo(5)U34 methyl 99.3 2.5E-11 5.4E-16 88.9 9.8 73 64-139 42-116 (247)
18 TIGR02752 MenG_heptapren 2-hep 99.3 2.6E-11 5.7E-16 87.6 9.5 62 64-127 33-95 (231)
19 PRK00377 cbiT cobalt-precorrin 99.3 4.5E-11 9.8E-16 84.8 9.7 75 59-138 23-98 (198)
20 TIGR02469 CbiT precorrin-6Y C5 99.3 5.4E-11 1.2E-15 77.5 9.3 63 62-127 5-68 (124)
21 PRK00107 gidB 16S rRNA methylt 99.3 5.8E-11 1.3E-15 83.7 9.4 59 76-139 43-102 (187)
22 PLN02233 ubiquinone biosynthes 99.2 9.1E-11 2E-15 86.7 9.8 58 64-123 61-119 (261)
23 PF06325 PrmA: Ribosomal prote 99.2 6.9E-11 1.5E-15 88.5 8.5 77 51-136 138-215 (295)
24 PF02353 CMAS: Mycolic acid cy 99.2 5.8E-11 1.3E-15 88.2 7.7 68 64-138 50-118 (273)
25 PF08704 GCD14: tRNA methyltra 99.2 2.2E-10 4.7E-15 83.8 10.2 80 55-139 19-99 (247)
26 TIGR03533 L3_gln_methyl protei 99.2 1.7E-10 3.8E-15 86.1 9.6 88 48-139 89-179 (284)
27 TIGR00740 methyltransferase, p 99.2 2.2E-10 4.8E-15 83.4 10.0 61 76-139 51-113 (239)
28 TIGR00138 gidB 16S rRNA methyl 99.2 9E-11 1.9E-15 82.3 7.2 57 78-139 42-99 (181)
29 TIGR02021 BchM-ChlM magnesium 99.1 3.5E-10 7.7E-15 81.2 9.2 69 64-138 41-110 (219)
30 PTZ00338 dimethyladenosine tra 99.1 3.3E-10 7.1E-15 85.0 9.3 79 53-139 12-92 (294)
31 PLN02781 Probable caffeoyl-CoA 99.1 4.9E-10 1.1E-14 81.6 9.6 69 66-139 58-127 (234)
32 PLN02244 tocopherol O-methyltr 99.1 3.2E-10 7E-15 86.7 9.1 68 64-138 101-174 (340)
33 PRK11805 N5-glutamine S-adenos 99.1 4.6E-10 1E-14 84.7 9.3 88 48-139 101-191 (307)
34 PF05175 MTS: Methyltransferas 99.1 4.2E-10 9E-15 78.1 8.1 66 66-138 21-87 (170)
35 COG2264 PrmA Ribosomal protein 99.1 3.1E-10 6.6E-15 84.8 7.8 62 65-128 149-211 (300)
36 TIGR03438 probable methyltrans 99.1 3.2E-10 6.9E-15 85.4 7.9 51 75-125 60-111 (301)
37 PRK11207 tellurite resistance 99.1 3.3E-10 7.2E-15 80.3 7.5 57 67-128 21-78 (197)
38 PRK00274 ksgA 16S ribosomal RN 99.1 5.6E-10 1.2E-14 82.9 9.0 58 61-123 27-85 (272)
39 PRK11036 putative S-adenosyl-L 99.1 4.2E-10 9.2E-15 82.7 8.2 57 77-139 43-100 (255)
40 PRK14966 unknown domain/N5-glu 99.1 6.9E-10 1.5E-14 86.4 9.7 87 45-138 219-306 (423)
41 PF01596 Methyltransf_3: O-met 99.1 4.5E-10 9.8E-15 80.2 8.0 61 76-139 43-104 (205)
42 PRK00121 trmB tRNA (guanine-N( 99.1 3.8E-10 8.2E-15 80.4 7.4 58 77-139 39-97 (202)
43 PRK00517 prmA ribosomal protei 99.1 6.9E-10 1.5E-14 81.4 8.7 60 66-127 107-167 (250)
44 TIGR00536 hemK_fam HemK family 99.1 9.3E-10 2E-14 82.2 9.1 89 46-139 80-172 (284)
45 PLN02476 O-methyltransferase 99.1 1.8E-09 3.8E-14 80.3 10.4 74 61-139 103-177 (278)
46 TIGR00477 tehB tellurite resis 99.1 5.9E-10 1.3E-14 79.0 7.6 57 66-127 20-77 (195)
47 TIGR00091 tRNA (guanine-N(7)-) 99.1 5.2E-10 1.1E-14 79.2 7.2 57 78-139 16-73 (194)
48 KOG2904|consensus 99.1 1.6E-09 3.5E-14 79.5 9.8 92 43-138 109-205 (328)
49 COG4123 Predicted O-methyltran 99.1 3.6E-10 7.9E-15 82.3 6.4 60 76-139 42-102 (248)
50 PRK13168 rumA 23S rRNA m(5)U19 99.1 8.8E-10 1.9E-14 87.0 8.9 68 63-139 284-352 (443)
51 COG2519 GCD14 tRNA(1-methylade 99.1 9.3E-10 2E-14 80.0 8.0 75 58-137 76-151 (256)
52 TIGR00406 prmA ribosomal prote 99.0 1.7E-09 3.7E-14 80.9 9.6 59 67-127 148-207 (288)
53 PF13649 Methyltransf_25: Meth 99.0 6.5E-10 1.4E-14 70.5 6.2 46 82-127 1-49 (101)
54 COG2890 HemK Methylase of poly 99.0 1.1E-09 2.5E-14 81.6 8.5 81 45-127 77-159 (280)
55 PRK03522 rumB 23S rRNA methylu 99.0 1.7E-09 3.7E-14 81.9 8.6 56 77-139 172-228 (315)
56 PF13659 Methyltransf_26: Meth 99.0 1.8E-09 3.9E-14 69.9 7.6 56 79-139 1-57 (117)
57 PRK05785 hypothetical protein; 99.0 1.6E-09 3.4E-14 78.5 8.0 56 64-121 37-93 (226)
58 PRK01544 bifunctional N5-gluta 99.0 2.2E-09 4.8E-14 86.0 9.5 93 43-139 78-196 (506)
59 COG4122 Predicted O-methyltran 99.0 3.9E-09 8.5E-14 75.8 9.8 72 62-138 45-117 (219)
60 COG2263 Predicted RNA methylas 99.0 3.6E-09 7.7E-14 73.9 9.1 71 61-138 27-99 (198)
61 PRK14896 ksgA 16S ribosomal RN 99.0 2.2E-09 4.7E-14 79.2 8.6 65 55-124 7-73 (258)
62 PLN02396 hexaprenyldihydroxybe 99.0 2.5E-09 5.4E-14 81.2 8.9 56 77-138 130-186 (322)
63 smart00650 rADc Ribosomal RNA 99.0 1.5E-09 3.4E-14 75.1 7.2 54 66-124 3-57 (169)
64 PRK11088 rrmA 23S rRNA methylt 99.0 1.4E-09 3.1E-14 80.7 7.4 46 77-122 84-132 (272)
65 PRK07580 Mg-protoporphyrin IX 99.0 2.9E-09 6.3E-14 76.7 8.8 60 65-127 49-110 (230)
66 PRK11873 arsM arsenite S-adeno 99.0 2.3E-09 4.9E-14 79.4 8.4 52 76-127 75-127 (272)
67 PRK15001 SAM-dependent 23S rib 99.0 2.2E-09 4.8E-14 83.0 8.4 59 66-127 218-277 (378)
68 TIGR00479 rumA 23S rRNA (uraci 99.0 2.1E-09 4.6E-14 84.5 8.4 66 65-139 281-347 (431)
69 PRK04266 fibrillarin; Provisio 99.0 3E-09 6.6E-14 77.0 8.4 48 76-124 70-118 (226)
70 TIGR03587 Pse_Me-ase pseudamin 99.0 2.6E-09 5.7E-14 76.2 7.9 47 76-123 41-88 (204)
71 PRK14103 trans-aconitate 2-met 99.0 1.7E-09 3.7E-14 79.5 7.1 53 66-121 19-72 (255)
72 PRK01683 trans-aconitate 2-met 99.0 1.8E-09 3.8E-14 79.4 6.9 56 65-123 20-76 (258)
73 COG2227 UbiG 2-polyprenyl-3-me 99.0 2.3E-09 5.1E-14 77.4 7.3 49 77-128 58-107 (243)
74 TIGR03534 RF_mod_PrmC protein- 99.0 5.4E-09 1.2E-13 76.1 9.4 56 78-138 87-143 (251)
75 KOG1541|consensus 99.0 9.1E-10 2E-14 78.6 5.0 56 61-121 33-91 (270)
76 PLN02585 magnesium protoporphy 99.0 3.8E-09 8.3E-14 79.9 8.6 60 63-125 128-189 (315)
77 KOG1270|consensus 99.0 1.6E-09 3.5E-14 79.0 5.9 40 79-121 90-130 (282)
78 COG4106 Tam Trans-aconitate me 98.9 1.5E-09 3.3E-14 77.2 5.5 51 76-127 28-79 (257)
79 TIGR00446 nop2p NOL1/NOP2/sun 98.9 6.2E-09 1.3E-13 77.0 9.0 53 76-128 69-122 (264)
80 PRK00216 ubiE ubiquinone/menaq 98.9 9.1E-09 2E-13 74.2 9.7 61 64-126 39-100 (239)
81 TIGR00537 hemK_rel_arch HemK-r 98.9 4.3E-09 9.2E-14 73.4 7.5 49 76-127 17-66 (179)
82 PRK14902 16S rRNA methyltransf 98.9 5.7E-09 1.2E-13 82.4 9.0 67 66-138 240-307 (444)
83 PRK00050 16S rRNA m(4)C1402 me 98.9 5.7E-09 1.2E-13 78.3 8.4 70 62-139 5-75 (296)
84 TIGR00755 ksgA dimethyladenosi 98.9 7.6E-09 1.6E-13 76.1 8.8 59 60-123 13-72 (253)
85 PRK14121 tRNA (guanine-N(7)-)- 98.9 6.8E-09 1.5E-13 80.3 8.9 65 68-139 114-179 (390)
86 PRK12335 tellurite resistance 98.9 4.8E-09 1E-13 78.4 7.8 48 77-127 119-167 (287)
87 PRK14904 16S rRNA methyltransf 98.9 6.6E-09 1.4E-13 82.1 9.0 65 68-138 242-307 (445)
88 PLN02589 caffeoyl-CoA O-methyl 98.9 1.4E-08 3.1E-13 74.4 9.8 73 62-139 65-138 (247)
89 PRK08317 hypothetical protein; 98.9 1.2E-08 2.7E-13 73.3 9.3 56 64-121 7-63 (241)
90 PLN02672 methionine S-methyltr 98.9 8.9E-09 1.9E-13 88.1 9.8 93 45-139 83-191 (1082)
91 TIGR02716 C20_methyl_CrtF C-20 98.9 9.4E-09 2E-13 77.4 8.9 67 66-139 139-206 (306)
92 PRK10909 rsmD 16S rRNA m(2)G96 98.9 2.1E-08 4.6E-13 71.3 10.1 71 62-139 38-109 (199)
93 PF03848 TehB: Tellurite resis 98.9 6.3E-09 1.4E-13 73.5 7.3 58 66-128 20-78 (192)
94 KOG1271|consensus 98.9 9.2E-09 2E-13 71.6 8.0 105 20-137 15-123 (227)
95 PRK14901 16S rRNA methyltransf 98.9 9.4E-09 2E-13 81.0 9.1 67 66-138 242-309 (434)
96 PRK14903 16S rRNA methyltransf 98.9 1.1E-08 2.3E-13 80.6 9.2 60 67-128 228-288 (431)
97 COG2265 TrmA SAM-dependent met 98.9 6.9E-09 1.5E-13 81.5 7.7 69 62-139 279-348 (432)
98 TIGR02143 trmA_only tRNA (urac 98.9 1.1E-08 2.5E-13 78.6 8.6 54 79-139 198-252 (353)
99 smart00828 PKS_MT Methyltransf 98.9 8.8E-09 1.9E-13 74.1 7.6 55 80-138 1-56 (224)
100 PRK06202 hypothetical protein; 98.9 8.6E-09 1.9E-13 74.7 7.4 50 77-126 59-112 (232)
101 PRK14967 putative methyltransf 98.9 1.7E-08 3.8E-13 72.8 8.9 50 76-127 34-84 (223)
102 TIGR02085 meth_trns_rumB 23S r 98.9 1.3E-08 2.8E-13 78.8 8.6 56 77-139 232-288 (374)
103 PTZ00098 phosphoethanolamine N 98.9 1.3E-08 2.7E-13 75.4 8.0 55 65-123 41-96 (263)
104 PRK09328 N5-glutamine S-adenos 98.9 1.9E-08 4.2E-13 74.3 8.8 47 76-123 106-153 (275)
105 PRK05031 tRNA (uracil-5-)-meth 98.8 1.6E-08 3.5E-13 78.0 8.5 54 79-139 207-261 (362)
106 PRK10258 biotin biosynthesis p 98.8 8.1E-09 1.7E-13 75.6 6.5 57 62-123 28-85 (251)
107 PLN02336 phosphoethanolamine N 98.8 1.4E-08 3E-13 80.8 8.3 54 66-123 256-310 (475)
108 PRK15068 tRNA mo(5)U34 methylt 98.8 6.6E-08 1.4E-12 73.5 11.6 42 76-119 120-161 (322)
109 PF05958 tRNA_U5-meth_tr: tRNA 98.8 5.1E-09 1.1E-13 80.5 5.6 66 63-138 184-250 (352)
110 KOG0820|consensus 98.8 1.8E-08 3.9E-13 74.0 8.0 79 53-139 34-114 (315)
111 PRK09489 rsmC 16S ribosomal RN 98.8 1.9E-08 4E-13 77.1 8.2 59 66-127 186-245 (342)
112 PRK14968 putative methyltransf 98.8 2.5E-08 5.4E-13 69.5 8.3 56 67-127 14-70 (188)
113 PRK04457 spermidine synthase; 98.8 4E-08 8.7E-13 72.7 9.7 59 77-139 65-124 (262)
114 TIGR00563 rsmB ribosomal RNA s 98.8 2.5E-08 5.5E-13 78.4 8.8 63 63-128 225-288 (426)
115 PRK11705 cyclopropane fatty ac 98.8 1.7E-08 3.7E-13 78.4 7.8 55 65-123 156-211 (383)
116 PRK10901 16S rRNA methyltransf 98.8 3.1E-08 6.6E-13 78.0 9.0 60 65-127 233-293 (427)
117 TIGR01177 conserved hypothetic 98.8 2.9E-08 6.2E-13 75.6 8.5 62 62-128 168-230 (329)
118 TIGR00452 methyltransferase, p 98.8 9.3E-08 2E-12 72.4 11.0 42 76-119 119-160 (314)
119 PRK06922 hypothetical protein; 98.8 3.3E-08 7.1E-13 80.6 9.0 49 76-125 416-465 (677)
120 PRK11727 23S rRNA mA1618 methy 98.8 2.4E-08 5.2E-13 75.7 7.7 56 78-137 114-171 (321)
121 KOG1540|consensus 98.8 4E-08 8.6E-13 71.6 8.3 73 64-139 88-166 (296)
122 COG4976 Predicted methyltransf 98.8 7E-09 1.5E-13 74.5 4.1 56 61-121 110-166 (287)
123 KOG3420|consensus 98.8 1.2E-08 2.5E-13 68.6 4.9 69 57-127 25-96 (185)
124 TIGR03704 PrmC_rel_meth putati 98.8 3E-08 6.5E-13 72.9 7.6 48 79-127 87-135 (251)
125 COG0030 KsgA Dimethyladenosine 98.8 4.6E-08 9.9E-13 71.9 8.4 64 55-123 8-73 (259)
126 KOG2915|consensus 98.8 4.8E-08 1E-12 71.7 8.3 76 58-138 87-163 (314)
127 KOG2187|consensus 98.8 1.3E-08 2.7E-13 80.3 5.2 68 63-139 370-438 (534)
128 PTZ00146 fibrillarin; Provisio 98.7 3.4E-08 7.3E-13 73.8 6.9 44 76-119 130-173 (293)
129 PF07021 MetW: Methionine bios 98.7 3.4E-08 7.4E-13 69.4 6.4 44 76-121 11-55 (193)
130 PF08242 Methyltransf_12: Meth 98.7 1.1E-09 2.3E-14 69.1 -1.0 44 83-127 1-45 (99)
131 TIGR00095 RNA methyltransferas 98.7 1.2E-07 2.6E-12 66.9 9.2 67 67-139 39-106 (189)
132 COG2813 RsmC 16S RNA G1207 met 98.7 3.9E-08 8.5E-13 73.3 7.0 60 66-128 148-208 (300)
133 TIGR01934 MenG_MenH_UbiE ubiqu 98.7 1.1E-07 2.4E-12 67.8 8.8 58 64-123 27-85 (223)
134 PLN03075 nicotianamine synthas 98.7 1.5E-07 3.2E-12 70.5 9.3 60 77-139 122-184 (296)
135 PF05401 NodS: Nodulation prot 98.7 4.4E-08 9.5E-13 69.1 6.0 46 77-125 42-88 (201)
136 TIGR03840 TMPT_Se_Te thiopurin 98.7 7.1E-08 1.5E-12 69.3 7.1 40 77-119 33-72 (213)
137 PF08241 Methyltransf_11: Meth 98.7 4.7E-08 1E-12 60.3 5.3 42 83-126 1-43 (95)
138 PF09445 Methyltransf_15: RNA 98.6 6.3E-08 1.4E-12 66.7 5.5 54 80-139 1-55 (163)
139 PLN02490 MPBQ/MSBQ methyltrans 98.6 1E-07 2.2E-12 72.9 7.1 46 77-123 112-158 (340)
140 TIGR02072 BioC biotin biosynth 98.6 1.3E-07 2.9E-12 68.0 7.5 59 64-123 19-79 (240)
141 PRK15128 23S rRNA m(5)C1962 me 98.6 1.4E-07 3.1E-12 73.6 7.5 59 77-139 219-278 (396)
142 KOG1499|consensus 98.6 9.9E-08 2.2E-12 72.2 6.3 59 75-139 57-116 (346)
143 PF13489 Methyltransf_23: Meth 98.6 1.6E-07 3.5E-12 63.6 6.9 40 76-118 20-59 (161)
144 TIGR02081 metW methionine bios 98.6 1.3E-07 2.9E-12 66.7 6.5 42 76-119 11-52 (194)
145 PF02390 Methyltransf_4: Putat 98.6 2.2E-07 4.7E-12 65.9 7.5 55 80-139 19-74 (195)
146 PRK11783 rlmL 23S rRNA m(2)G24 98.6 1.5E-07 3.3E-12 78.2 7.3 59 77-139 537-596 (702)
147 PRK13255 thiopurine S-methyltr 98.6 1.6E-07 3.5E-12 67.7 6.5 41 76-119 35-75 (218)
148 PLN02336 phosphoethanolamine N 98.6 2.3E-07 5E-12 73.8 7.8 49 66-119 27-75 (475)
149 PRK11188 rrmJ 23S rRNA methylt 98.6 9.9E-08 2.1E-12 68.4 5.1 38 76-113 49-86 (209)
150 PRK05134 bifunctional 3-demeth 98.6 4.5E-07 9.7E-12 65.6 8.4 48 76-126 46-94 (233)
151 TIGR01444 fkbM_fam methyltrans 98.6 2.8E-07 6.1E-12 61.7 6.8 46 81-127 1-47 (143)
152 TIGR00438 rrmJ cell division p 98.6 1.1E-07 2.4E-12 66.8 4.8 40 76-115 30-69 (188)
153 PF02475 Met_10: Met-10+ like- 98.5 3.9E-07 8.4E-12 64.9 7.4 60 76-139 99-159 (200)
154 PHA03411 putative methyltransf 98.5 4.3E-07 9.4E-12 67.4 7.4 46 76-122 62-108 (279)
155 PHA03412 putative methyltransf 98.5 3.6E-07 7.7E-12 66.4 6.8 64 56-123 31-97 (241)
156 PRK04148 hypothetical protein; 98.5 4E-07 8.8E-12 60.7 6.6 42 77-121 15-58 (134)
157 PF01170 UPF0020: Putative RNA 98.5 1.5E-06 3.2E-11 60.9 9.2 73 61-138 13-94 (179)
158 PRK00811 spermidine synthase; 98.5 6.5E-07 1.4E-11 67.0 7.1 62 77-139 75-138 (283)
159 TIGR00478 tly hemolysin TlyA f 98.5 6.5E-07 1.4E-11 64.9 6.8 41 77-119 74-114 (228)
160 PF00398 RrnaAD: Ribosomal RNA 98.5 9.3E-07 2E-11 65.4 7.7 69 60-139 14-83 (262)
161 PF13679 Methyltransf_32: Meth 98.5 1.3E-06 2.8E-11 58.8 7.7 50 77-126 24-77 (141)
162 TIGR01983 UbiG ubiquinone bios 98.5 1.7E-06 3.8E-11 62.0 8.9 47 78-127 45-92 (224)
163 smart00138 MeTrc Methyltransfe 98.4 5.8E-07 1.3E-11 66.6 6.5 46 77-122 98-152 (264)
164 PF08003 Methyltransf_9: Prote 98.4 2.1E-06 4.5E-11 64.4 8.4 62 56-119 91-154 (315)
165 KOG1663|consensus 98.4 2.5E-06 5.3E-11 61.4 8.4 73 62-139 59-132 (237)
166 KOG3191|consensus 98.4 3.4E-06 7.3E-11 58.8 8.5 51 77-127 42-93 (209)
167 PF05724 TPMT: Thiopurine S-me 98.4 2E-06 4.2E-11 62.1 7.3 53 61-119 23-75 (218)
168 COG0220 Predicted S-adenosylme 98.4 1.7E-06 3.7E-11 62.7 6.8 54 80-138 50-104 (227)
169 PRK13256 thiopurine S-methyltr 98.3 4.8E-06 1E-10 60.4 8.5 42 76-120 41-83 (226)
170 KOG1500|consensus 98.3 2.3E-06 4.9E-11 65.0 6.8 57 77-139 176-233 (517)
171 KOG3010|consensus 98.3 1.5E-06 3.2E-11 63.0 5.4 43 77-122 31-75 (261)
172 TIGR00006 S-adenosyl-methyltra 98.3 5.9E-06 1.3E-10 62.3 8.8 71 61-139 5-76 (305)
173 PLN02366 spermidine synthase 98.3 8.5E-06 1.8E-10 61.7 9.3 62 77-139 90-152 (308)
174 KOG2899|consensus 98.3 2E-06 4.4E-11 62.4 5.4 54 70-124 50-104 (288)
175 cd02440 AdoMet_MTases S-adenos 98.3 4.1E-06 8.8E-11 51.5 6.2 39 81-121 1-40 (107)
176 PRK04338 N(2),N(2)-dimethylgua 98.2 8.2E-06 1.8E-10 63.5 8.9 62 64-128 44-107 (382)
177 COG2520 Predicted methyltransf 98.2 5.1E-06 1.1E-10 63.5 6.8 59 76-139 186-245 (341)
178 TIGR00417 speE spermidine synt 98.2 9.4E-06 2E-10 60.3 7.8 61 77-138 71-132 (270)
179 PRK11933 yebU rRNA (cytosine-C 98.2 1.6E-05 3.4E-10 63.4 9.3 53 76-128 111-164 (470)
180 PF03602 Cons_hypoth95: Conser 98.1 1.9E-05 4.1E-10 55.5 8.2 72 62-138 26-98 (183)
181 PF02384 N6_Mtase: N-6 DNA Met 98.1 6.8E-06 1.5E-10 62.0 6.3 68 57-126 27-101 (311)
182 KOG2730|consensus 98.1 7.5E-06 1.6E-10 58.7 5.9 56 78-139 94-150 (263)
183 PF05185 PRMT5: PRMT5 arginine 98.1 2.2E-05 4.8E-10 62.3 8.7 58 79-139 187-248 (448)
184 PRK01581 speE spermidine synth 98.1 2.7E-05 5.8E-10 60.1 8.5 44 76-120 148-192 (374)
185 COG3963 Phospholipid N-methylt 98.1 1.7E-05 3.6E-10 54.7 6.6 63 61-125 33-96 (194)
186 PRK03612 spermidine synthase; 98.1 1.6E-05 3.4E-10 64.3 7.6 62 77-139 296-361 (521)
187 COG1092 Predicted SAM-dependen 98.0 3E-05 6.5E-10 60.4 8.3 58 78-139 217-275 (393)
188 TIGR03439 methyl_EasF probable 98.0 3E-05 6.5E-10 59.0 7.6 49 75-123 73-125 (319)
189 PF10294 Methyltransf_16: Puta 98.0 1.9E-05 4.2E-10 54.9 6.1 49 76-126 43-92 (173)
190 PRK11783 rlmL 23S rRNA m(2)G24 98.0 4E-05 8.6E-10 64.0 8.9 74 62-139 175-290 (702)
191 PF08123 DOT1: Histone methyla 98.0 4.1E-05 9E-10 54.7 7.5 56 63-121 29-85 (205)
192 PRK01544 bifunctional N5-gluta 98.0 3E-05 6.4E-10 62.5 7.1 50 78-128 347-397 (506)
193 PF05971 Methyltransf_10: Prot 97.9 5.3E-05 1.1E-09 57.0 7.7 56 79-138 103-160 (299)
194 PF03291 Pox_MCEL: mRNA cappin 97.9 3.5E-05 7.5E-10 58.9 6.7 44 78-123 62-106 (331)
195 COG0116 Predicted N6-adenine-s 97.9 8.4E-05 1.8E-09 57.5 8.6 74 61-139 176-288 (381)
196 COG1041 Predicted DNA modifica 97.9 4.1E-05 8.8E-10 58.4 6.6 62 61-127 182-244 (347)
197 PF10672 Methyltrans_SAM: S-ad 97.9 0.00012 2.6E-09 54.9 8.9 58 77-138 122-180 (286)
198 KOG4300|consensus 97.9 3.2E-05 6.9E-10 55.2 5.2 46 80-127 78-124 (252)
199 PF04816 DUF633: Family of unk 97.9 5.4E-05 1.2E-09 54.2 6.4 54 82-139 1-55 (205)
200 TIGR02987 met_A_Alw26 type II 97.8 7.7E-05 1.7E-09 60.3 7.2 71 56-126 4-87 (524)
201 COG4076 Predicted RNA methylas 97.8 6.1E-05 1.3E-09 53.0 5.7 54 79-139 33-87 (252)
202 PF01795 Methyltransf_5: MraW 97.8 9E-05 1.9E-09 56.0 6.9 70 62-139 6-76 (310)
203 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.8 0.00034 7.4E-09 52.4 9.7 58 69-128 78-136 (283)
204 TIGR00308 TRM1 tRNA(guanine-26 97.8 0.00024 5.2E-09 55.2 9.0 49 80-128 46-95 (374)
205 COG0275 Predicted S-adenosylme 97.7 0.0003 6.5E-09 52.8 8.6 71 62-139 9-80 (314)
206 COG0742 N6-adenine-specific me 97.7 0.00052 1.1E-08 48.3 9.3 71 62-137 27-98 (187)
207 PF02527 GidB: rRNA small subu 97.7 0.00084 1.8E-08 47.3 9.9 72 63-139 30-105 (184)
208 PF00891 Methyltransf_2: O-met 97.7 0.00022 4.8E-09 51.8 7.1 52 76-139 98-150 (241)
209 PLN02823 spermine synthase 97.6 0.00029 6.4E-09 54.0 7.2 62 77-139 102-164 (336)
210 KOG2361|consensus 97.6 0.00019 4.1E-09 52.2 5.7 41 81-122 74-117 (264)
211 COG0357 GidB Predicted S-adeno 97.6 0.00059 1.3E-08 49.1 7.9 66 62-128 48-117 (215)
212 PF06080 DUF938: Protein of un 97.5 0.00049 1.1E-08 49.1 7.0 62 68-130 14-77 (204)
213 COG0144 Sun tRNA and rRNA cyto 97.5 0.00083 1.8E-08 51.9 8.5 58 69-128 149-208 (355)
214 PF09243 Rsm22: Mitochondrial 97.5 0.00043 9.3E-09 51.6 6.7 45 78-122 33-78 (274)
215 KOG4589|consensus 97.5 0.00022 4.8E-09 50.2 4.6 37 76-112 67-103 (232)
216 PF07091 FmrO: Ribosomal RNA m 97.4 0.00052 1.1E-08 50.3 6.2 60 67-127 94-154 (251)
217 PF01728 FtsJ: FtsJ-like methy 97.4 0.00011 2.5E-09 51.1 2.7 37 78-114 23-59 (181)
218 COG2384 Predicted SAM-dependen 97.4 0.00045 9.7E-09 49.7 5.6 60 76-139 14-74 (226)
219 PF01269 Fibrillarin: Fibrilla 97.4 0.00089 1.9E-08 48.3 7.1 45 75-119 70-114 (229)
220 COG0293 FtsJ 23S rRNA methylas 97.4 0.00064 1.4E-08 48.5 6.2 38 76-113 43-80 (205)
221 KOG1501|consensus 97.4 0.0004 8.8E-09 54.7 5.4 53 81-138 69-122 (636)
222 PRK11524 putative methyltransf 97.4 0.00087 1.9E-08 50.2 7.1 46 76-124 206-252 (284)
223 COG3897 Predicted methyltransf 97.4 0.00026 5.6E-09 50.1 3.8 50 77-128 78-128 (218)
224 PF05219 DREV: DREV methyltran 97.3 0.00071 1.5E-08 49.9 6.1 39 78-119 94-132 (265)
225 PHA01634 hypothetical protein 97.3 0.00064 1.4E-08 45.0 5.1 49 77-127 27-76 (156)
226 PRK10742 putative methyltransf 97.3 0.0012 2.5E-08 48.5 7.0 69 66-139 76-152 (250)
227 PF01555 N6_N4_Mtase: DNA meth 97.3 0.0011 2.3E-08 47.2 6.4 51 63-119 179-229 (231)
228 KOG1975|consensus 97.2 0.00067 1.4E-08 51.5 5.0 46 76-123 115-161 (389)
229 PRK13699 putative methylase; P 97.2 0.0017 3.7E-08 47.1 6.6 47 76-125 161-208 (227)
230 PRK11760 putative 23S rRNA C24 97.1 0.00061 1.3E-08 52.2 4.0 35 76-113 209-243 (357)
231 PF13578 Methyltransf_24: Meth 97.1 0.00037 8.1E-09 44.2 2.1 53 83-139 1-56 (106)
232 PF12147 Methyltransf_20: Puta 97.0 0.0084 1.8E-07 45.0 9.2 59 78-139 135-195 (311)
233 PF11599 AviRa: RRNA methyltra 97.0 0.00088 1.9E-08 48.1 3.9 47 79-125 52-100 (246)
234 PF01564 Spermine_synth: Sperm 96.8 0.0066 1.4E-07 44.6 6.9 62 77-139 75-137 (246)
235 PF07757 AdoMet_MTase: Predict 96.8 0.0029 6.4E-08 40.5 4.3 47 64-113 42-90 (112)
236 KOG3115|consensus 96.7 0.0014 3E-08 46.8 2.5 47 79-126 61-108 (249)
237 COG0286 HsdM Type I restrictio 96.5 0.0095 2.1E-07 48.0 6.7 71 56-128 166-240 (489)
238 COG0500 SmtA SAM-dependent met 96.5 0.0075 1.6E-07 38.8 4.9 40 82-122 52-92 (257)
239 COG1189 Predicted rRNA methyla 96.4 0.0049 1.1E-07 44.9 4.0 41 77-119 78-118 (245)
240 KOG4058|consensus 96.2 0.0092 2E-07 40.7 4.2 60 63-126 59-119 (199)
241 COG0421 SpeE Spermidine syntha 96.2 0.029 6.3E-07 42.1 7.2 59 79-138 77-136 (282)
242 COG2521 Predicted archaeal met 96.2 0.0048 1E-07 45.0 2.9 60 76-139 132-192 (287)
243 COG1352 CheR Methylase of chem 96.2 0.037 8.1E-07 41.2 7.7 56 64-119 81-145 (268)
244 COG1889 NOP1 Fibrillarin-like 96.1 0.018 3.9E-07 41.2 5.4 55 64-119 61-116 (231)
245 KOG1122|consensus 96.0 0.014 3E-07 45.9 5.0 54 76-129 239-293 (460)
246 PF03059 NAS: Nicotianamine sy 96.0 0.05 1.1E-06 40.7 7.6 58 79-139 121-181 (276)
247 PRK10611 chemotaxis methyltran 96.0 0.019 4.1E-07 43.2 5.4 43 79-121 116-166 (287)
248 KOG1227|consensus 95.9 0.0016 3.5E-08 49.0 -0.5 48 78-127 194-243 (351)
249 KOG2651|consensus 95.9 0.037 8E-07 43.2 6.8 43 78-122 153-195 (476)
250 COG3129 Predicted SAM-dependen 95.9 0.027 5.9E-07 41.1 5.6 64 61-125 57-125 (292)
251 PF04989 CmcI: Cephalosporin h 95.7 0.052 1.1E-06 38.9 6.3 58 78-139 32-92 (206)
252 KOG2078|consensus 95.6 0.0095 2.1E-07 46.9 2.6 57 76-137 247-304 (495)
253 PF01739 CheR: CheR methyltran 95.6 0.017 3.6E-07 41.1 3.7 42 78-119 31-80 (196)
254 PF04445 SAM_MT: Putative SAM- 95.6 0.03 6.6E-07 40.8 5.0 60 76-139 71-139 (234)
255 PRK00536 speE spermidine synth 95.6 0.042 9.1E-07 40.8 5.7 59 76-137 70-129 (262)
256 PF04672 Methyltransf_19: S-ad 95.5 0.091 2E-06 39.1 7.4 58 65-124 56-117 (267)
257 PF02636 Methyltransf_28: Puta 95.5 0.048 1E-06 40.0 5.9 46 79-124 19-72 (252)
258 PF05050 Methyltransf_21: Meth 95.4 0.046 9.9E-07 36.8 5.3 38 84-121 1-42 (167)
259 KOG3987|consensus 95.4 0.0032 7E-08 45.2 -0.6 39 78-119 112-150 (288)
260 PF02005 TRM: N2,N2-dimethylgu 95.1 0.09 1.9E-06 41.1 6.5 59 78-138 49-108 (377)
261 KOG2940|consensus 95.0 0.059 1.3E-06 39.5 4.7 43 77-121 71-113 (325)
262 PF05891 Methyltransf_PK: AdoM 94.9 0.026 5.7E-07 40.7 2.8 44 78-124 55-100 (218)
263 PF03141 Methyltransf_29: Puta 94.8 0.039 8.4E-07 44.3 3.9 54 63-121 100-161 (506)
264 cd00315 Cyt_C5_DNA_methylase C 94.6 0.074 1.6E-06 39.7 4.7 42 81-124 2-44 (275)
265 KOG1596|consensus 94.5 0.028 6E-07 41.4 2.2 44 75-118 153-196 (317)
266 PF05206 TRM13: Methyltransfer 94.5 0.12 2.6E-06 38.3 5.6 40 76-115 16-59 (259)
267 KOG1098|consensus 94.2 0.054 1.2E-06 44.7 3.4 38 76-113 42-79 (780)
268 COG1565 Uncharacterized conser 93.8 0.41 8.9E-06 37.2 7.5 49 78-126 77-133 (370)
269 COG4301 Uncharacterized conser 93.5 0.41 8.9E-06 35.6 6.6 49 76-124 76-128 (321)
270 KOG0024|consensus 93.4 0.27 5.9E-06 37.7 5.8 48 76-124 167-215 (354)
271 KOG2920|consensus 92.8 0.099 2.1E-06 39.1 2.7 39 77-117 115-153 (282)
272 PF05148 Methyltransf_8: Hypot 92.8 0.23 4.9E-06 35.8 4.4 45 64-113 59-103 (219)
273 COG0863 DNA modification methy 92.8 0.61 1.3E-05 34.6 7.0 47 76-125 220-267 (302)
274 COG4798 Predicted methyltransf 92.7 0.2 4.3E-06 35.9 3.9 39 76-114 46-84 (238)
275 PF07942 N2227: N2227-like pro 92.7 0.36 7.9E-06 36.1 5.5 39 78-119 56-94 (270)
276 KOG2360|consensus 92.6 0.19 4.2E-06 39.2 4.1 54 76-129 211-265 (413)
277 PF00145 DNA_methylase: C-5 cy 92.6 0.24 5.3E-06 37.0 4.6 41 81-123 2-43 (335)
278 PF12242 Eno-Rase_NADH_b: NAD( 92.2 1.1 2.3E-05 27.0 6.0 49 65-113 23-74 (78)
279 PF11899 DUF3419: Protein of u 91.6 0.58 1.3E-05 36.7 5.7 46 69-119 28-73 (380)
280 COG4262 Predicted spermidine s 91.3 1 2.3E-05 35.3 6.7 61 77-138 288-352 (508)
281 KOG2912|consensus 90.8 0.66 1.4E-05 35.7 5.1 53 82-138 106-159 (419)
282 cd08283 FDH_like_1 Glutathione 90.5 0.82 1.8E-05 35.5 5.7 45 76-121 182-228 (386)
283 COG1867 TRM1 N2,N2-dimethylgua 90.1 1.9 4.2E-05 33.7 7.2 46 79-125 53-99 (380)
284 COG1063 Tdh Threonine dehydrog 89.6 1.6 3.5E-05 33.6 6.6 45 77-122 167-213 (350)
285 KOG0821|consensus 89.5 1.1 2.5E-05 32.8 5.2 42 76-119 48-89 (326)
286 KOG1269|consensus 89.2 0.57 1.2E-05 36.5 3.8 56 70-127 102-158 (364)
287 KOG2198|consensus 89.0 1.2 2.7E-05 34.7 5.4 50 76-125 153-206 (375)
288 KOG1709|consensus 88.9 3.7 8.1E-05 30.0 7.4 41 77-119 100-140 (271)
289 COG1064 AdhP Zn-dependent alco 88.8 1.5 3.2E-05 33.9 5.7 42 76-119 164-206 (339)
290 PF02254 TrkA_N: TrkA-N domain 88.8 0.61 1.3E-05 29.6 3.2 33 87-119 4-37 (116)
291 KOG3178|consensus 88.7 0.79 1.7E-05 35.4 4.2 45 79-127 178-223 (342)
292 PF05575 V_cholerae_RfbT: Vibr 88.4 1.2 2.6E-05 31.2 4.6 51 75-126 76-127 (286)
293 KOG2782|consensus 88.2 0.59 1.3E-05 34.1 3.1 55 62-119 29-83 (303)
294 PF01861 DUF43: Protein of unk 88.1 7.8 0.00017 28.6 8.8 65 61-127 27-92 (243)
295 COG3510 CmcI Cephalosporin hyd 87.7 2.7 5.8E-05 30.1 6.0 43 77-119 68-113 (237)
296 KOG1331|consensus 87.4 0.47 1E-05 35.7 2.2 39 76-119 43-81 (293)
297 TIGR00675 dcm DNA-methyltransf 87.2 1.1 2.3E-05 34.2 4.2 41 82-124 1-42 (315)
298 PLN02668 indole-3-acetate carb 86.1 0.71 1.5E-05 36.3 2.7 19 79-97 64-82 (386)
299 PF01234 NNMT_PNMT_TEMT: NNMT/ 86.0 0.94 2E-05 33.6 3.2 40 77-119 55-95 (256)
300 KOG2352|consensus 85.4 0.47 1E-05 38.1 1.5 46 77-123 294-340 (482)
301 PF07279 DUF1442: Protein of u 85.3 10 0.00022 27.5 8.0 74 61-139 26-103 (218)
302 KOG3924|consensus 85.0 1.3 2.8E-05 34.9 3.6 52 65-119 181-232 (419)
303 COG5379 BtaA S-adenosylmethion 84.9 2.9 6.4E-05 32.0 5.3 45 70-119 57-101 (414)
304 COG0270 Dcm Site-specific DNA 84.9 2.1 4.5E-05 32.8 4.7 43 79-123 3-46 (328)
305 PRK09424 pntA NAD(P) transhydr 84.8 2.3 5E-05 34.7 5.2 41 77-119 163-204 (509)
306 KOG2793|consensus 84.8 2.2 4.8E-05 31.5 4.6 39 78-118 86-124 (248)
307 cd08237 ribitol-5-phosphate_DH 84.5 2.8 6E-05 31.9 5.3 44 76-119 161-205 (341)
308 PF02086 MethyltransfD12: D12 84.1 1.4 3E-05 32.1 3.4 50 64-119 8-58 (260)
309 PF03721 UDPG_MGDP_dh_N: UDP-g 83.7 1.1 2.3E-05 31.5 2.5 37 81-119 2-39 (185)
310 PRK10458 DNA cytosine methylas 83.4 3 6.6E-05 33.7 5.2 42 79-122 88-130 (467)
311 KOG3045|consensus 83.1 1.7 3.6E-05 32.7 3.4 29 65-94 168-196 (325)
312 KOG0022|consensus 82.9 4.5 9.7E-05 31.2 5.6 45 76-121 190-235 (375)
313 TIGR00497 hsdM type I restrict 82.3 5.5 0.00012 32.4 6.4 68 59-126 198-269 (501)
314 KOG2671|consensus 81.7 1.2 2.5E-05 34.7 2.2 48 76-126 206-261 (421)
315 PF12692 Methyltransf_17: S-ad 80.0 6.8 0.00015 26.8 5.2 34 78-112 28-61 (160)
316 KOG2798|consensus 79.2 3.6 7.9E-05 31.7 4.1 52 65-119 131-188 (369)
317 TIGR03201 dearomat_had 6-hydro 79.1 6.3 0.00014 30.0 5.5 42 76-119 164-206 (349)
318 PF03492 Methyltransf_7: SAM d 77.2 4.3 9.4E-05 31.2 4.1 23 77-99 15-37 (334)
319 cd05188 MDR Medium chain reduc 75.9 9.2 0.0002 27.2 5.4 42 76-119 132-174 (271)
320 COG1062 AdhC Zn-dependent alco 74.6 13 0.00027 29.1 5.9 52 68-122 177-229 (366)
321 cd08254 hydroxyacyl_CoA_DH 6-h 74.5 10 0.00022 28.3 5.5 42 76-119 163-205 (338)
322 TIGR02818 adh_III_F_hyde S-(hy 74.1 14 0.0003 28.5 6.2 42 76-119 183-226 (368)
323 PRK09880 L-idonate 5-dehydroge 73.7 13 0.00029 28.1 6.0 43 76-119 167-210 (343)
324 PLN02740 Alcohol dehydrogenase 72.9 9.8 0.00021 29.4 5.2 42 76-119 196-239 (381)
325 PF03514 GRAS: GRAS domain fam 72.2 17 0.00038 28.4 6.4 56 67-124 101-167 (374)
326 KOG2811|consensus 70.7 11 0.00024 29.7 4.8 39 78-117 182-223 (420)
327 TIGR02822 adh_fam_2 zinc-bindi 70.3 17 0.00037 27.5 5.9 42 76-119 163-205 (329)
328 PRK06124 gluconate 5-dehydroge 70.2 35 0.00076 24.4 7.3 46 78-124 10-57 (256)
329 cd00401 AdoHcyase S-adenosyl-L 70.2 11 0.00024 30.0 4.9 41 77-119 200-241 (413)
330 TIGR03366 HpnZ_proposed putati 69.8 18 0.00039 26.6 5.8 42 76-119 118-161 (280)
331 KOG2352|consensus 69.5 21 0.00046 29.0 6.3 42 76-119 45-87 (482)
332 PF00107 ADH_zinc_N: Zinc-bind 69.5 6 0.00013 25.3 2.9 30 88-119 1-30 (130)
333 PRK08217 fabG 3-ketoacyl-(acyl 69.3 37 0.0008 24.0 7.3 46 78-124 4-51 (253)
334 cd00423 Pterin_binding Pterin 69.2 19 0.00042 26.5 5.8 46 76-121 34-95 (258)
335 COG0677 WecC UDP-N-acetyl-D-ma 69.1 4.6 9.9E-05 32.1 2.5 38 80-119 10-48 (436)
336 PRK06172 short chain dehydroge 68.4 39 0.00086 24.0 7.3 46 78-124 6-53 (253)
337 PRK15057 UDP-glucose 6-dehydro 68.2 8.8 0.00019 30.2 4.0 33 88-120 7-40 (388)
338 cd08239 THR_DH_like L-threonin 68.1 20 0.00044 26.9 5.9 42 76-119 161-204 (339)
339 PRK09496 trkA potassium transp 67.9 33 0.00072 27.1 7.3 58 62-121 214-273 (453)
340 cd08281 liver_ADH_like1 Zinc-d 67.3 21 0.00045 27.5 5.9 42 76-119 189-232 (371)
341 cd08238 sorbose_phosphate_red 67.2 17 0.00038 28.4 5.5 46 76-121 173-222 (410)
342 COG4017 Uncharacterized protei 67.2 26 0.00055 25.3 5.7 60 76-138 42-104 (254)
343 PRK07063 short chain dehydroge 67.1 44 0.00095 23.9 7.4 46 78-124 6-53 (260)
344 PF03686 UPF0146: Uncharacteri 67.0 34 0.00073 22.7 5.9 34 78-114 13-47 (127)
345 PF07101 DUF1363: Protein of u 66.9 2.2 4.9E-05 26.8 0.4 19 82-100 6-24 (124)
346 KOG1253|consensus 66.5 2.8 6E-05 34.1 0.9 52 77-128 108-160 (525)
347 cd08255 2-desacetyl-2-hydroxye 65.9 20 0.00042 26.0 5.3 42 76-119 95-138 (277)
348 TIGR03451 mycoS_dep_FDH mycoth 65.7 18 0.00039 27.6 5.3 42 76-119 174-217 (358)
349 PRK15182 Vi polysaccharide bio 65.2 11 0.00023 30.1 4.0 39 79-119 6-44 (425)
350 PRK05867 short chain dehydroge 65.1 48 0.001 23.7 7.2 46 78-124 8-55 (253)
351 cd08301 alcohol_DH_plants Plan 64.7 28 0.00061 26.6 6.2 43 76-119 185-228 (369)
352 PRK07677 short chain dehydroge 63.9 51 0.0011 23.5 7.2 39 80-119 2-41 (252)
353 PRK06194 hypothetical protein; 62.4 52 0.0011 23.9 7.1 44 79-123 6-51 (287)
354 PLN03154 putative allyl alcoho 62.0 34 0.00074 26.1 6.2 42 76-119 156-199 (348)
355 KOG1099|consensus 62.0 5.2 0.00011 29.6 1.5 34 80-113 43-84 (294)
356 PRK09242 tropinone reductase; 61.9 56 0.0012 23.3 7.3 46 78-124 8-55 (257)
357 COG3392 Adenine-specific DNA m 61.5 17 0.00036 27.5 4.1 34 76-112 25-58 (330)
358 PRK07904 short chain dehydroge 61.3 52 0.0011 23.7 6.8 48 76-124 5-56 (253)
359 COG3007 Uncharacterized paraqu 61.0 17 0.00037 27.9 4.1 33 78-110 40-73 (398)
360 cd08245 CAD Cinnamyl alcohol d 60.9 35 0.00076 25.4 6.0 42 76-119 160-202 (330)
361 COG1748 LYS9 Saccharopine dehy 60.6 23 0.0005 28.0 5.0 40 80-121 2-44 (389)
362 cd08300 alcohol_DH_class_III c 60.5 37 0.0008 26.0 6.1 42 76-119 184-227 (368)
363 PRK06914 short chain dehydroge 60.4 63 0.0014 23.4 7.6 40 79-119 3-43 (280)
364 PRK07035 short chain dehydroge 60.0 60 0.0013 23.1 7.2 46 78-124 7-54 (252)
365 PRK08945 putative oxoacyl-(acy 60.0 59 0.0013 23.0 7.1 48 76-124 9-58 (247)
366 cd08277 liver_alcohol_DH_like 59.8 37 0.00081 26.0 6.1 42 76-119 182-225 (365)
367 PRK05866 short chain dehydroge 59.7 66 0.0014 23.8 7.2 45 78-123 39-85 (293)
368 TIGR00561 pntA NAD(P) transhyd 59.5 25 0.00055 28.9 5.2 40 78-119 163-203 (511)
369 COG5459 Predicted rRNA methyla 59.4 5.3 0.00012 31.4 1.3 42 78-119 113-154 (484)
370 PRK08703 short chain dehydroge 59.1 49 0.0011 23.3 6.3 44 78-122 5-50 (239)
371 cd08230 glucose_DH Glucose deh 59.0 28 0.00061 26.4 5.3 42 76-119 170-215 (355)
372 COG1255 Uncharacterized protei 58.7 25 0.00054 23.1 4.1 33 79-114 14-47 (129)
373 PRK12829 short chain dehydroge 58.5 61 0.0013 23.1 6.7 42 77-119 9-51 (264)
374 cd01075 NAD_bind_Leu_Phe_Val_D 58.0 37 0.0008 24.0 5.4 42 78-121 27-70 (200)
375 PRK07890 short chain dehydroge 57.5 67 0.0014 22.8 7.4 45 78-123 4-50 (258)
376 PRK08862 short chain dehydroge 57.4 44 0.00096 23.8 5.8 46 79-124 5-51 (227)
377 PF11968 DUF3321: Putative met 57.1 8.9 0.00019 27.8 2.0 30 80-113 53-82 (219)
378 PRK07819 3-hydroxybutyryl-CoA 56.8 20 0.00044 26.8 4.1 40 80-122 6-48 (286)
379 PRK06035 3-hydroxyacyl-CoA deh 56.5 23 0.0005 26.4 4.3 40 80-122 4-46 (291)
380 PTZ00357 methyltransferase; Pr 56.1 58 0.0013 28.3 6.7 39 81-119 703-744 (1072)
381 PRK07523 gluconate 5-dehydroge 56.0 72 0.0016 22.7 7.1 46 78-124 9-56 (255)
382 PRK07062 short chain dehydroge 55.9 73 0.0016 22.8 7.3 45 78-123 7-53 (265)
383 PRK05854 short chain dehydroge 55.5 86 0.0019 23.5 7.6 45 78-123 13-59 (313)
384 PRK05876 short chain dehydroge 54.9 82 0.0018 23.0 7.2 45 78-123 5-51 (275)
385 PRK15181 Vi polysaccharide bio 54.6 39 0.00084 25.7 5.4 35 78-113 14-49 (348)
386 PLN02827 Alcohol dehydrogenase 54.5 41 0.00089 26.0 5.5 43 76-119 191-234 (378)
387 TIGR01202 bchC 2-desacetyl-2-h 54.5 30 0.00065 25.9 4.7 42 77-119 143-185 (308)
388 TIGR00284 dihydropteroate synt 54.4 42 0.00091 27.5 5.7 46 76-121 175-227 (499)
389 cd08261 Zn_ADH7 Alcohol dehydr 54.1 40 0.00087 25.2 5.4 42 76-119 157-199 (337)
390 PRK08339 short chain dehydroge 54.1 82 0.0018 22.8 7.5 45 78-123 7-53 (263)
391 PRK05808 3-hydroxybutyryl-CoA 54.0 27 0.00058 25.9 4.3 36 81-119 5-42 (282)
392 PRK08213 gluconate 5-dehydroge 53.6 80 0.0017 22.5 7.3 46 78-124 11-58 (259)
393 PRK07102 short chain dehydroge 53.3 78 0.0017 22.4 7.1 42 80-122 2-45 (243)
394 COG3640 CooC CO dehydrogenase 52.5 40 0.00086 25.0 4.7 67 54-124 111-178 (255)
395 PRK07814 short chain dehydroge 52.4 86 0.0019 22.6 7.5 45 78-123 9-55 (263)
396 KOG0822|consensus 52.4 99 0.0021 25.9 7.3 54 80-138 369-427 (649)
397 cd01065 NAD_bind_Shikimate_DH 52.1 57 0.0012 21.4 5.4 45 77-123 17-64 (155)
398 PRK03659 glutathione-regulated 51.5 21 0.00046 29.7 3.7 37 81-119 402-439 (601)
399 PRK01747 mnmC bifunctional tRN 51.3 19 0.00041 30.3 3.4 35 79-113 58-103 (662)
400 PRK07097 gluconate 5-dehydroge 51.2 90 0.0019 22.4 7.2 47 78-124 9-56 (265)
401 PRK06181 short chain dehydroge 51.0 89 0.0019 22.3 7.2 43 80-123 2-46 (263)
402 cd08232 idonate-5-DH L-idonate 51.0 45 0.00097 24.9 5.2 41 78-119 165-206 (339)
403 PRK06113 7-alpha-hydroxysteroi 50.8 89 0.0019 22.3 7.2 45 78-123 10-56 (255)
404 PRK07417 arogenate dehydrogena 50.8 28 0.00061 25.8 4.0 36 81-119 2-39 (279)
405 KOG0023|consensus 50.8 52 0.0011 25.7 5.3 48 76-125 179-228 (360)
406 PRK06940 short chain dehydroge 50.4 97 0.0021 22.6 7.3 41 81-123 4-45 (275)
407 PRK05786 fabG 3-ketoacyl-(acyl 50.2 74 0.0016 22.3 6.0 41 78-119 4-45 (238)
408 PF02737 3HCDH_N: 3-hydroxyacy 50.2 51 0.0011 22.8 5.0 41 82-124 2-44 (180)
409 PRK10669 putative cation:proto 49.9 23 0.0005 29.1 3.6 38 80-119 418-456 (558)
410 PRK07109 short chain dehydroge 49.5 1.1E+02 0.0025 23.1 7.3 47 78-125 7-55 (334)
411 KOG1209|consensus 49.4 33 0.00072 25.3 3.9 36 77-112 5-41 (289)
412 TIGR00936 ahcY adenosylhomocys 49.3 38 0.00083 27.0 4.6 41 77-119 193-234 (406)
413 PRK06057 short chain dehydroge 49.3 69 0.0015 22.9 5.8 41 78-119 6-47 (255)
414 PLN02780 ketoreductase/ oxidor 49.1 63 0.0014 24.5 5.7 46 78-124 52-99 (320)
415 PRK09260 3-hydroxybutyryl-CoA 48.9 38 0.00083 25.1 4.5 39 81-121 3-43 (288)
416 PRK13394 3-hydroxybutyrate deh 48.8 95 0.0021 22.0 7.1 45 79-124 7-53 (262)
417 PF05711 TylF: Macrocin-O-meth 48.5 1.1E+02 0.0024 22.7 9.6 49 62-110 56-110 (248)
418 PRK08277 D-mannonate oxidoredu 48.4 1E+02 0.0022 22.3 7.2 45 78-123 9-55 (278)
419 PRK12826 3-ketoacyl-(acyl-carr 48.2 94 0.002 21.8 7.2 45 78-123 5-51 (251)
420 PRK05650 short chain dehydroge 48.2 1E+02 0.0022 22.2 7.2 42 81-123 2-45 (270)
421 PRK06139 short chain dehydroge 48.0 1.1E+02 0.0025 23.2 7.0 47 78-125 6-54 (330)
422 PRK07478 short chain dehydroge 47.8 99 0.0022 22.0 7.4 45 79-124 6-52 (254)
423 COG1087 GalE UDP-glucose 4-epi 47.5 13 0.00028 28.6 1.7 32 78-112 244-276 (329)
424 PRK06949 short chain dehydroge 47.5 1E+02 0.0022 21.9 7.2 44 78-122 8-53 (258)
425 TIGR00518 alaDH alanine dehydr 47.2 51 0.0011 25.8 5.0 43 78-122 166-210 (370)
426 PRK07454 short chain dehydroge 47.2 98 0.0021 21.7 7.6 45 78-123 5-51 (241)
427 PF04189 Gcd10p: Gcd10p family 47.1 1E+02 0.0022 23.5 6.5 46 62-109 187-232 (299)
428 TIGR02825 B4_12hDH leukotriene 46.8 1E+02 0.0022 23.0 6.5 42 76-119 136-179 (325)
429 COG1568 Predicted methyltransf 46.6 59 0.0013 24.9 4.9 113 3-129 87-202 (354)
430 PLN02662 cinnamyl-alcohol dehy 46.3 65 0.0014 23.9 5.4 36 78-114 3-39 (322)
431 PRK06125 short chain dehydroge 46.3 1.1E+02 0.0023 21.9 7.4 45 78-123 6-52 (259)
432 TIGR03206 benzo_BadH 2-hydroxy 46.0 1E+02 0.0022 21.7 7.4 43 79-122 3-47 (250)
433 PRK08589 short chain dehydroge 46.0 1.1E+02 0.0025 22.1 7.0 43 78-122 5-49 (272)
434 PRK03562 glutathione-regulated 45.8 26 0.00057 29.3 3.4 38 80-119 401-439 (621)
435 PRK10309 galactitol-1-phosphat 45.7 65 0.0014 24.3 5.3 42 76-119 158-201 (347)
436 PRK11730 fadB multifunctional 45.3 40 0.00087 28.8 4.5 40 80-122 314-356 (715)
437 cd08234 threonine_DH_like L-th 44.9 66 0.0014 23.9 5.2 42 76-119 157-200 (334)
438 PRK08251 short chain dehydroge 44.8 1.1E+02 0.0024 21.6 7.3 42 80-122 3-46 (248)
439 cd05278 FDH_like Formaldehyde 44.7 74 0.0016 23.8 5.5 43 76-119 165-208 (347)
440 PRK07231 fabG 3-ketoacyl-(acyl 44.7 1.1E+02 0.0024 21.5 7.1 44 78-122 4-49 (251)
441 PF11312 DUF3115: Protein of u 44.5 45 0.00097 25.7 4.2 35 80-114 88-141 (315)
442 PLN02353 probable UDP-glucose 44.3 38 0.00083 27.5 4.0 39 80-119 2-42 (473)
443 PLN02586 probable cinnamyl alc 44.2 48 0.001 25.4 4.5 40 76-117 181-221 (360)
444 COG1004 Ugd Predicted UDP-gluc 44.1 55 0.0012 26.2 4.7 36 81-119 2-39 (414)
445 PRK07066 3-hydroxybutyryl-CoA 44.0 47 0.001 25.5 4.3 40 80-122 8-50 (321)
446 cd08295 double_bond_reductase_ 43.6 91 0.002 23.4 5.9 42 76-119 149-192 (338)
447 PF11387 DUF2795: Protein of u 43.6 27 0.00058 18.4 2.1 26 13-40 16-41 (44)
448 COG2933 Predicted SAM-dependen 43.3 20 0.00044 27.1 2.1 36 75-113 208-243 (358)
449 COG0338 Dam Site-specific DNA 43.3 14 0.00031 27.7 1.3 46 70-119 17-62 (274)
450 PRK07576 short chain dehydroge 43.2 1.2E+02 0.0027 21.8 7.3 45 78-123 8-54 (264)
451 PRK08643 acetoin reductase; Va 42.9 1.2E+02 0.0026 21.5 7.2 43 80-123 3-47 (256)
452 PRK06200 2,3-dihydroxy-2,3-dih 42.8 1E+02 0.0023 22.0 5.9 41 78-119 5-46 (263)
453 PRK06153 hypothetical protein; 42.6 46 0.00099 26.5 4.1 34 78-112 175-209 (393)
454 PRK09072 short chain dehydroge 42.2 1.3E+02 0.0027 21.6 7.3 44 78-122 4-49 (263)
455 cd08241 QOR1 Quinone oxidoredu 41.6 86 0.0019 22.7 5.4 42 76-119 137-180 (323)
456 PRK07666 fabG 3-ketoacyl-(acyl 41.6 1.2E+02 0.0026 21.2 7.3 44 79-123 7-52 (239)
457 PRK06197 short chain dehydroge 41.1 1.5E+02 0.0032 22.0 7.4 45 78-123 15-61 (306)
458 cd05285 sorbitol_DH Sorbitol d 41.0 85 0.0018 23.6 5.3 42 76-119 160-203 (343)
459 COG0569 TrkA K+ transport syst 41.0 58 0.0013 23.5 4.2 37 81-119 2-39 (225)
460 PF06564 YhjQ: YhjQ protein; 40.7 21 0.00046 26.3 1.9 31 86-116 12-43 (243)
461 cd08294 leukotriene_B4_DH_like 40.6 1.1E+02 0.0024 22.5 5.9 42 76-119 141-184 (329)
462 PRK08340 glucose-1-dehydrogena 40.6 1E+02 0.0023 22.0 5.6 38 81-119 2-40 (259)
463 PRK11154 fadJ multifunctional 40.6 56 0.0012 27.9 4.6 42 80-123 310-354 (708)
464 cd08296 CAD_like Cinnamyl alco 40.5 1.1E+02 0.0024 22.9 5.9 42 76-119 161-203 (333)
465 PRK05875 short chain dehydroge 40.5 1.4E+02 0.003 21.5 7.3 41 78-119 6-47 (276)
466 PF10609 ParA: ParA/MinD ATPas 40.4 84 0.0018 19.0 4.2 47 81-127 4-54 (81)
467 PRK11064 wecC UDP-N-acetyl-D-m 40.4 40 0.00086 26.8 3.5 38 80-119 4-42 (415)
468 PRK12939 short chain dehydroge 40.1 1.3E+02 0.0028 21.1 7.3 45 78-123 6-52 (250)
469 PLN02896 cinnamyl-alcohol dehy 39.6 1.6E+02 0.0034 22.3 6.7 40 77-117 8-48 (353)
470 PLN03209 translocon at the inn 39.4 2.2E+02 0.0047 24.0 7.6 46 76-122 77-124 (576)
471 PRK08085 gluconate 5-dehydroge 39.4 1.4E+02 0.003 21.2 7.2 45 78-123 8-54 (254)
472 PRK05476 S-adenosyl-L-homocyst 39.2 67 0.0014 25.8 4.6 41 77-119 210-251 (425)
473 KOG2918|consensus 39.0 1.1E+02 0.0023 23.8 5.4 43 77-119 86-129 (335)
474 cd08285 NADP_ADH NADP(H)-depen 38.9 1E+02 0.0022 23.2 5.5 43 76-119 164-207 (351)
475 cd08236 sugar_DH NAD(P)-depend 38.9 1.2E+02 0.0026 22.7 5.8 42 76-119 157-200 (343)
476 PRK09496 trkA potassium transp 38.7 84 0.0018 24.8 5.2 37 81-119 2-39 (453)
477 PLN02427 UDP-apiose/xylose syn 38.7 73 0.0016 24.6 4.7 38 78-116 13-52 (386)
478 PLN02545 3-hydroxybutyryl-CoA 38.5 63 0.0014 24.0 4.2 38 80-119 5-43 (295)
479 PRK03369 murD UDP-N-acetylmura 38.4 87 0.0019 25.4 5.2 42 76-119 9-51 (488)
480 PRK12429 3-hydroxybutyrate deh 38.1 1.4E+02 0.0031 21.0 7.4 44 79-123 4-49 (258)
481 PRK08293 3-hydroxybutyryl-CoA 38.1 92 0.002 23.1 5.0 40 80-122 4-46 (287)
482 PRK09186 flagellin modificatio 37.9 1.4E+02 0.0031 21.0 7.2 44 78-122 3-48 (256)
483 PLN02650 dihydroflavonol-4-red 37.6 1.2E+02 0.0027 22.9 5.8 38 79-117 5-43 (351)
484 KOG1562|consensus 36.9 66 0.0014 24.8 4.0 62 76-138 119-181 (337)
485 PRK09987 dTDP-4-dehydrorhamnos 36.9 67 0.0014 23.9 4.1 31 81-112 2-32 (299)
486 PRK06129 3-hydroxyacyl-CoA deh 36.7 58 0.0013 24.5 3.8 37 81-119 4-41 (308)
487 TIGR00571 dam DNA adenine meth 36.6 67 0.0015 23.8 4.1 48 64-119 14-61 (266)
488 cd08278 benzyl_alcohol_DH Benz 36.6 1.2E+02 0.0027 23.1 5.7 43 76-119 184-227 (365)
489 TIGR01963 PHB_DH 3-hydroxybuty 36.5 1.5E+02 0.0033 20.8 7.1 38 81-119 3-41 (255)
490 PRK05872 short chain dehydroge 36.4 1.4E+02 0.0031 22.0 5.9 41 78-119 8-49 (296)
491 PF02662 FlpD: Methyl-viologen 36.3 1E+02 0.0023 20.0 4.5 46 79-137 53-99 (124)
492 PRK06720 hypothetical protein; 36.2 1.4E+02 0.003 20.4 6.1 41 79-119 16-56 (169)
493 TIGR02356 adenyl_thiF thiazole 36.2 1.5E+02 0.0033 20.8 5.7 33 78-112 20-54 (202)
494 PRK06130 3-hydroxybutyryl-CoA 36.0 77 0.0017 23.7 4.4 40 80-121 5-46 (311)
495 PRK05993 short chain dehydroge 35.9 1.5E+02 0.0032 21.6 5.8 39 79-118 4-43 (277)
496 PLN02695 GDP-D-mannose-3',5'-e 35.8 74 0.0016 24.6 4.3 36 76-112 18-54 (370)
497 PRK09291 short chain dehydroge 35.8 1.6E+02 0.0034 20.8 7.0 39 80-119 3-42 (257)
498 PLN02514 cinnamyl-alcohol dehy 35.7 1.1E+02 0.0024 23.4 5.3 41 77-119 179-220 (357)
499 PRK07024 short chain dehydroge 35.5 1.5E+02 0.0033 21.1 5.8 39 80-119 3-42 (257)
500 cd08242 MDR_like Medium chain 35.2 1.6E+02 0.0035 21.7 6.0 42 76-119 153-195 (319)
No 1
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.92 E-value=1.1e-24 Score=155.60 Aligned_cols=127 Identities=33% Similarity=0.557 Sum_probs=108.5
Q ss_pred cccccccchhhhcCCCCCHHHHHHHHhCCCCCCCCCC-CCccccccccccCCCCcccchHHHHHHHHHHhcccCCCCEEE
Q psy7827 5 KIFMVPTDYIVEIDSIKSPRVIDAMIHIDRGHFCAHN-DSRKYMLAARDIGYGSIIDNPVQHAEVLELLKDKLVPGAKVL 83 (140)
Q Consensus 5 ~~~m~~~~~l~~~~~~~~~~~~~a~~~~~r~~f~~~~-~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vL 83 (140)
++.||| +|++.+.+.++++.+||+++||+.|.|.. ...+|.|.+++.+++++++.|.++..+++.+. ++++++||
T Consensus 2 ~~~lv~--~l~~~g~v~~~~v~~A~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L~--l~pg~~VL 77 (209)
T PF01135_consen 2 NKALVD--NLIRPGDVTDPRVLDAFRAVPREDFVPPAFRDLAYEDRPLPIGCGQTISAPSMVARMLEALD--LKPGDRVL 77 (209)
T ss_dssp HHHHHH--HHHHTTSS-SHHHHHHHHHS-GGGCSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTT--C-TT-EEE
T ss_pred HHHHHH--HHHHcCCCCCHHHHHHHHhCCHHHhCchhhhcCCCCCCCeeecceeechHHHHHHHHHHHHh--cCCCCEEE
Confidence 567996 78878878999999999999999999984 57899999999999999999999999999999 99999999
Q ss_pred EEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 84 DVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 84 DiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
|||||+|+.+..++..+++.+.|++||+++.+.+.| +++...+.. +|.+++|
T Consensus 78 eIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~----nv~~~~g 130 (209)
T PF01135_consen 78 EIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID----NVEVVVG 130 (209)
T ss_dssp EES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH----SEEEEES
T ss_pred EecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC----ceeEEEc
Confidence 999999999999999998888899999999999999 999998874 6777664
No 2
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.90 E-value=2.6e-23 Score=148.40 Aligned_cols=128 Identities=30% Similarity=0.382 Sum_probs=111.6
Q ss_pred cccccccchhhhcCCCCCHHHHHHHHhCCCCCCCCCC-CCccccccccccCCCCcccchHHHHHHHHHHhcccCCCCEEE
Q psy7827 5 KIFMVPTDYIVEIDSIKSPRVIDAMIHIDRGHFCAHN-DSRKYMLAARDIGYGSIIDNPVQHAEVLELLKDKLVPGAKVL 83 (140)
Q Consensus 5 ~~~m~~~~~l~~~~~~~~~~~~~a~~~~~r~~f~~~~-~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vL 83 (140)
|+.||+ ++++.+.++++++.+||+++||+.|.+.. ...+|.+.++++..++.+..+.+...+++.+. +.++++||
T Consensus 2 ~~~lv~--~~~~~~~v~~~~v~~a~~~vpR~~fv~~~~~~~ay~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VL 77 (205)
T PRK13944 2 AKRLVE--ELVREGIIKSERVKKAMLSVPREEFVMPEYRMMAYEDRPLPLFAGATISAPHMVAMMCELIE--PRPGMKIL 77 (205)
T ss_pred HHHHHH--HHHHcCCcCCHHHHHHHHhCCHhHcCChhHHhcCccCCCcccCCCCEechHHHHHHHHHhcC--CCCCCEEE
Confidence 567995 77777778999999999999999999875 46799999999999999999999999999887 78889999
Q ss_pred EEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 84 DVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 84 DiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
|+|||+|+.+..+++..++.++|+++|+++++++.| +++..++.. .+++++++
T Consensus 78 DiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~---~~v~~~~~ 131 (205)
T PRK13944 78 EVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW---GVVEVYHG 131 (205)
T ss_pred EECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC---CcEEEEEC
Confidence 999999999999999876667899999999999999 999887762 35666553
No 3
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.90 E-value=2.6e-23 Score=149.07 Aligned_cols=129 Identities=35% Similarity=0.560 Sum_probs=113.1
Q ss_pred cccccccccchhhhcCCCCCHHHHHHHHhCCCCCCCCCC-CCccccccccccCCCCcccchHHHHHHHHHHhcccCCCCE
Q psy7827 3 GYKIFMVPTDYIVEIDSIKSPRVIDAMIHIDRGHFCAHN-DSRKYMLAARDIGYGSIIDNPVQHAEVLELLKDKLVPGAK 81 (140)
Q Consensus 3 ~~~~~m~~~~~l~~~~~~~~~~~~~a~~~~~r~~f~~~~-~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (140)
..+..||| ++.+.+.++|+++.+||+.+||+.|.|.. ...+|.|.+++++.|+.++.|.+...+++.+. +.++++
T Consensus 4 ~~~~~~v~--~l~~~~~v~~~~v~~a~~~v~R~~fvp~~~~~~ay~d~~~~~~~g~~~~~p~~~~~~~~~l~--~~~g~~ 79 (212)
T PRK13942 4 EEKRRVIE--ELIREGYIKSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTISAIHMVAIMCELLD--LKEGMK 79 (212)
T ss_pred hHHHHHHH--HHHhcCCCCCHHHHHHHHcCCHhhcCCchhhhcCcCCCCccCCCCCEeCcHHHHHHHHHHcC--CCCcCE
Confidence 34567996 56666668999999999999999999885 46799999999999999999999999999998 889999
Q ss_pred EEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 82 VLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 82 vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
|||||||+|+++..+++..++.++|+++|+++++++.| +++...+.. +|+++++
T Consensus 80 VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~----~v~~~~g 134 (212)
T PRK13942 80 VLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD----NVEVIVG 134 (212)
T ss_pred EEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----CeEEEEC
Confidence 99999999999999999987678999999999999999 998887763 5666654
No 4
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.2e-23 Score=147.15 Aligned_cols=122 Identities=33% Similarity=0.542 Sum_probs=111.2
Q ss_pred cccccchhhhcCCCCCHHHHHHHHhCCCCCCCCCC-CCccccccccccCCCCcccchHHHHHHHHHHhcccCCCCEEEEE
Q psy7827 7 FMVPTDYIVEIDSIKSPRVIDAMIHIDRGHFCAHN-DSRKYMLAARDIGYGSIIDNPVQHAEVLELLKDKLVPGAKVLDV 85 (140)
Q Consensus 7 ~m~~~~~l~~~~~~~~~~~~~a~~~~~r~~f~~~~-~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDi 85 (140)
.|+ .++|+++++ .++++.+||..+||+.|.|+. ...+|.|.+++.++|+.++.|.++..+++.|. ++++++||||
T Consensus 4 ~~l-~~~lr~~~i-~~~~v~~A~~~vPRe~FVp~~~~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~--~~~g~~VLEI 79 (209)
T COG2518 4 RML-VERLRTEGI-TDERVLKAFLAVPRELFVPAAYKHLAYEDRALPIGCGQTISAPHMVARMLQLLE--LKPGDRVLEI 79 (209)
T ss_pred HHH-HHHHHHcCC-CcHHHHHHHHhCCHHhccCchhhcccccCCcccCCCCceecCcHHHHHHHHHhC--CCCCCeEEEE
Confidence 455 379999995 569999999999999999985 68899999999999999999999999999999 9999999999
Q ss_pred cCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 86 GSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 86 GcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
|||+|+.+..|++..+. |++||+.++..+.| +|+...+.. +|.+++|
T Consensus 80 GtGsGY~aAvla~l~~~---V~siEr~~~L~~~A~~~L~~lg~~----nV~v~~g 127 (209)
T COG2518 80 GTGSGYQAAVLARLVGR---VVSIERIEELAEQARRNLETLGYE----NVTVRHG 127 (209)
T ss_pred CCCchHHHHHHHHHhCe---EEEEEEcHHHHHHHHHHHHHcCCC----ceEEEEC
Confidence 99999999999999864 99999999999999 999999985 4777664
No 5
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.89 E-value=1.1e-22 Score=146.05 Aligned_cols=126 Identities=37% Similarity=0.632 Sum_probs=111.5
Q ss_pred cccccccchhhhcCCCCCHHHHHHHHhCCCCCCCCCC-CCccccccccccCCCCcccchHHHHHHHHHHhcccCCCCEEE
Q psy7827 5 KIFMVPTDYIVEIDSIKSPRVIDAMIHIDRGHFCAHN-DSRKYMLAARDIGYGSIIDNPVQHAEVLELLKDKLVPGAKVL 83 (140)
Q Consensus 5 ~~~m~~~~~l~~~~~~~~~~~~~a~~~~~r~~f~~~~-~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vL 83 (140)
+..||| ++++.+.++++.+.+||+.+||+.|.+.. ...+|.+.+++++.++.+..|.+...+++.+. +.++.+||
T Consensus 7 ~~~~v~--~~~~~~~v~~~~v~~a~~~v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VL 82 (215)
T TIGR00080 7 KKALID--KLINEGYIKSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLE--LKPGMKVL 82 (215)
T ss_pred HHHHHH--HHHhcCCcCCHHHHHHHHhCChhhhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhC--CCCcCEEE
Confidence 567996 77777778999999999999999999875 45789999999999999999999999999998 88999999
Q ss_pred EEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEee
Q psy7827 84 DVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFIC 138 (140)
Q Consensus 84 DiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~ 138 (140)
|+|||+|+++..+++..++.++|+++|+++++++.| +++...+++ ++++++
T Consensus 83 DiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~----~v~~~~ 134 (215)
T TIGR00080 83 EIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD----NVIVIV 134 (215)
T ss_pred EECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC----CeEEEE
Confidence 999999999999999987678899999999999999 999888763 466554
No 6
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.83 E-value=7.7e-20 Score=130.90 Aligned_cols=122 Identities=30% Similarity=0.439 Sum_probs=106.3
Q ss_pred cccccccchhhhcCCCCCHHHHHHHHhCCCCCCCCCC-CCccccccccccCCCCcccchHHHHHHHHHHhcccCCCCEEE
Q psy7827 5 KIFMVPTDYIVEIDSIKSPRVIDAMIHIDRGHFCAHN-DSRKYMLAARDIGYGSIIDNPVQHAEVLELLKDKLVPGAKVL 83 (140)
Q Consensus 5 ~~~m~~~~~l~~~~~~~~~~~~~a~~~~~r~~f~~~~-~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vL 83 (140)
|+.||+ +|++++ +.++.+.++|+.+||+.|.|.. ...+|.+.++++..+..++.|.+...+++.+. +.++.+||
T Consensus 9 ~~~~v~--~l~~~~-~~~~~~~~a~~~~~r~~f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~--~~~~~~VL 83 (212)
T PRK00312 9 FARLVL--RLRAEG-ILDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLE--LKPGDRVL 83 (212)
T ss_pred HHHHHH--HHHHcC-CCCHHHHHHHHcCCHhHcCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcC--CCCCCEEE
Confidence 677995 999999 7899999999999999999864 46689999999999988999999999999887 78899999
Q ss_pred EEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEee
Q psy7827 84 DVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFIC 138 (140)
Q Consensus 84 DiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~ 138 (140)
|+|||+|+++..+++... +++++|+++++++.| +++.+.++. ++++++
T Consensus 84 eiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~----~v~~~~ 132 (212)
T PRK00312 84 EIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLH----NVSVRH 132 (212)
T ss_pred EECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCC----ceEEEE
Confidence 999999999998888753 599999999999999 998887663 355544
No 7
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.81 E-value=2.8e-19 Score=135.03 Aligned_cols=124 Identities=27% Similarity=0.398 Sum_probs=103.4
Q ss_pred cccccccchhhhcCCCCCHHHHHHHHhCCCCCCCCCCC--Ccccccccccc-CCC---CcccchHHHHHHHHHHhcccCC
Q psy7827 5 KIFMVPTDYIVEIDSIKSPRVIDAMIHIDRGHFCAHND--SRKYMLAARDI-GYG---SIIDNPVQHAEVLELLKDKLVP 78 (140)
Q Consensus 5 ~~~m~~~~~l~~~~~~~~~~~~~a~~~~~r~~f~~~~~--~~~y~~~~~~~-~~~---~~~~~~~~~~~~~~~l~~~~~~ 78 (140)
|+.||+ ++++.+ +++ ++.+||.++||+.|.|... ..+|.+.+++. ..+ +.+..|.+...+++.+. +++
T Consensus 7 ~~~lv~--~l~~~g-v~d-~vl~a~~~vpRe~Fvp~~~~~~~aY~D~~l~~~~~g~~~~~~~~p~l~a~ll~~L~--i~~ 80 (322)
T PRK13943 7 REKLFW--ILKKYG-ISD-HIAKAFLEVPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDK 80 (322)
T ss_pred HHHHHH--HHHHcC-CcH-HHHHHHHcCCHHHcCCcchhhhhccCCCcccccCCCcccccCCcHHHHHHHHHhcC--CCC
Confidence 567995 999888 466 9999999999999999853 67899988875 344 46667888888888887 788
Q ss_pred CCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEee
Q psy7827 79 GAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFIC 138 (140)
Q Consensus 79 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~ 138 (140)
+++|||+|||+|.++..+++..+..++|+++|+++++++.| +++...+.+ ++.+++
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~----nV~~i~ 137 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE----NVIFVC 137 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC----cEEEEe
Confidence 89999999999999999999876557899999999999999 888887763 455554
No 8
>KOG1661|consensus
Probab=99.70 E-value=6.3e-17 Score=113.75 Aligned_cols=117 Identities=44% Similarity=0.730 Sum_probs=106.1
Q ss_pred ccccchhhhcCCCCCHHHHHHHHhCCCCCCCCCC-CCccccccccccCCCCcccchHHHHHHHHHHhcccCCCCEEEEEc
Q psy7827 8 MVPTDYIVEIDSIKSPRVIDAMIHIDRGHFCAHN-DSRKYMLAARDIGYGSIIDNPVQHAEVLELLKDKLVPGAKVLDVG 86 (140)
Q Consensus 8 m~~~~~l~~~~~~~~~~~~~a~~~~~r~~f~~~~-~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG 86 (140)
.+| +|+.+++|++..+.+||+.+.|..|.|.. +..+|.+.++..+++.+++.|.+++.+++.|..++.+|.++||+|
T Consensus 13 LId--~L~~~~~Ir~~~v~~A~~a~dR~dy~p~~~~~n~y~d~pq~~G~n~~iSAp~mha~~le~L~~~L~pG~s~LdvG 90 (237)
T KOG1661|consen 13 LID--NLRENKIIRTRRVEQAMRATDRSDYAPRSERTNPYMDSPQKIGYNLTISAPHMHATALEYLDDHLQPGASFLDVG 90 (237)
T ss_pred HHH--HHHhcchhHHHHHHHHHHhhchhhccccccccCCCCCCccccCCceEEcchHHHHHHHHHHHHhhccCcceeecC
Confidence 554 89999999999999999999999999883 455999999999999999999999999999998899999999999
Q ss_pred CCCChHHHHHHHHhCCCCe-EEEEcCCHHHHHHH-hchhhcC
Q psy7827 87 SGSGYLTTCFAHMVGKNGS-VVGVEHIPEIVNHA-SNVTTLH 126 (140)
Q Consensus 87 cG~G~~~~~la~~~~~~~~-v~gvD~s~~~i~~a-~~~~~~~ 126 (140)
+|+|+++..++..++..+. .+|||.-++.++.+ +|+.+.-
T Consensus 91 sGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i 132 (237)
T KOG1661|consen 91 SGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDI 132 (237)
T ss_pred CCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhc
Confidence 9999999999988776664 49999999999999 9987765
No 9
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.46 E-value=4.6e-13 Score=86.23 Aligned_cols=58 Identities=34% Similarity=0.635 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
|+.+|||+|||+|.++..+++.. +.++++|+|+|++|++.| +++...+. ..+|+++++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~---~~~i~~~~~ 59 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGL---SDRITFVQG 59 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTT---TTTEEEEES
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCC---CCCeEEEEC
Confidence 57899999999999999999964 567899999999999999 88866555 468888775
No 10
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.41 E-value=3.2e-12 Score=88.97 Aligned_cols=76 Identities=22% Similarity=0.399 Sum_probs=67.4
Q ss_pred CcccchHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEE
Q psy7827 57 SIIDNPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIK 135 (140)
Q Consensus 57 ~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~ 135 (140)
..++.+.+....+..|. +.++++++|||||||.+++.++ +.++.+++++||.++++++.. +|+.+.+++ +++
T Consensus 15 ~p~TK~EIRal~ls~L~--~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~----n~~ 87 (187)
T COG2242 15 GPMTKEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVD----NLE 87 (187)
T ss_pred CCCcHHHHHHHHHHhhC--CCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCC----cEE
Confidence 34667888888889998 8999999999999999999999 556889999999999999999 999999975 677
Q ss_pred Eeec
Q psy7827 136 FICE 139 (140)
Q Consensus 136 ~~~g 139 (140)
++.|
T Consensus 88 vv~g 91 (187)
T COG2242 88 VVEG 91 (187)
T ss_pred EEec
Confidence 7765
No 11
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.40 E-value=1.6e-12 Score=94.37 Aligned_cols=71 Identities=28% Similarity=0.514 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 62 PVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
..|.+.+++.+. +++|.+|||+|||||.++..+++..+ .++|+|+|+|+.|++.| +++...+.. . |+|++|
T Consensus 37 ~~Wr~~~i~~~~--~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~---~-i~fv~~ 108 (238)
T COG2226 37 RLWRRALISLLG--IKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQ---N-VEFVVG 108 (238)
T ss_pred HHHHHHHHHhhC--CCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCcc---c-eEEEEe
Confidence 346667777776 56899999999999999999999986 78999999999999999 998887763 2 777664
No 12
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.39 E-value=8.7e-13 Score=95.90 Aligned_cols=70 Identities=36% Similarity=0.575 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 64 QHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 64 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
|.+.+++.+. ..++.+|||+|||||.++..+++..++.++|+|+|+|++|++.| +++...+.. +|+++++
T Consensus 35 wr~~~~~~~~--~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~----~i~~v~~ 105 (233)
T PF01209_consen 35 WRRKLIKLLG--LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ----NIEFVQG 105 (233)
T ss_dssp --SHHHHHHT----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT------SEEEEE-
T ss_pred HHHHHHhccC--CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC----CeeEEEc
Confidence 4556667666 77899999999999999999999887788999999999999999 888876652 6776654
No 13
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.35 E-value=5.6e-12 Score=85.74 Aligned_cols=59 Identities=27% Similarity=0.458 Sum_probs=49.7
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
.++.+|||+|||+|.++..+++...+.++++|+|+|++|++.| ++++..+.+ +++|+++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~----ni~~~~~ 61 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD----NIEFIQG 61 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST----TEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc----ccceEEe
Confidence 4678999999999999999997655778999999999999999 888888773 6777654
No 14
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.32 E-value=6.3e-12 Score=93.01 Aligned_cols=65 Identities=29% Similarity=0.359 Sum_probs=56.0
Q ss_pred HHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEE
Q psy7827 65 HAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKF 136 (140)
Q Consensus 65 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~ 136 (140)
.+.+.+.+. +++|++|||||||+|.+++++|+.+ +.+|+|+++|+++.+.+ +++.+.|++ .+|++
T Consensus 61 ~~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~---~~v~v 126 (283)
T COG2230 61 LDLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLE---DNVEV 126 (283)
T ss_pred HHHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCC---cccEE
Confidence 445555555 8999999999999999999999997 55799999999999999 999999883 56766
No 15
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.32 E-value=1.7e-11 Score=86.71 Aligned_cols=74 Identities=20% Similarity=0.346 Sum_probs=59.5
Q ss_pred cccchHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEE
Q psy7827 58 IIDNPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKF 136 (140)
Q Consensus 58 ~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~ 136 (140)
.+........++..+. +.++.+|||+|||+|.++..+++.. +.++++++|+|+.+++.+ +++...+.+ ++++
T Consensus 22 p~t~~~v~~~l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~----~v~~ 94 (196)
T PRK07402 22 PLTKREVRLLLISQLR--LEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVK----NVEV 94 (196)
T ss_pred CCCHHHHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCC----CeEE
Confidence 4455556666777776 7788999999999999999998774 557899999999999999 998877653 4666
Q ss_pred ee
Q psy7827 137 IC 138 (140)
Q Consensus 137 ~~ 138 (140)
++
T Consensus 95 ~~ 96 (196)
T PRK07402 95 IE 96 (196)
T ss_pred EE
Confidence 54
No 16
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.31 E-value=2.4e-11 Score=85.36 Aligned_cols=74 Identities=22% Similarity=0.266 Sum_probs=59.6
Q ss_pred ccchHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEe
Q psy7827 59 IDNPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFI 137 (140)
Q Consensus 59 ~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~ 137 (140)
+..+.+...+++.+. +.++.+|||+|||+|.++..+++.. +.++++++|+++.+++.| +++...++. +++++
T Consensus 14 ~~~~~~r~~~~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~----~i~~~ 86 (187)
T PRK08287 14 MTKEEVRALALSKLE--LHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCG----NIDII 86 (187)
T ss_pred CchHHHHHHHHHhcC--CCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCC----CeEEE
Confidence 445566666677776 7788999999999999999999885 567899999999999999 888877653 46655
Q ss_pred ec
Q psy7827 138 CE 139 (140)
Q Consensus 138 ~g 139 (140)
++
T Consensus 87 ~~ 88 (187)
T PRK08287 87 PG 88 (187)
T ss_pred ec
Confidence 43
No 17
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.30 E-value=2.5e-11 Score=88.92 Aligned_cols=73 Identities=15% Similarity=0.287 Sum_probs=55.2
Q ss_pred HHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 64 QHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 64 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
+...+...+...+.++.+|||+|||+|..+..+++.. .++++++|+|+|+.|++.| +++...+. ..+|+++++
T Consensus 42 ~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~---~~~v~~~~~ 116 (247)
T PRK15451 42 IISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA---PTPVDVIEG 116 (247)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC---CCCeEEEeC
Confidence 3444444443335678899999999999999998854 3567899999999999999 88877665 345776654
No 18
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.29 E-value=2.6e-11 Score=87.57 Aligned_cols=62 Identities=19% Similarity=0.393 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCC
Q psy7827 64 QHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHY 127 (140)
Q Consensus 64 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~ 127 (140)
+...++..+. +.++++|||+|||+|..+..+++..++.++++|+|+++.+++.| +++...+.
T Consensus 33 ~~~~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~ 95 (231)
T TIGR02752 33 WRKDTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL 95 (231)
T ss_pred HHHHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC
Confidence 4456666666 77889999999999999999999876677899999999999999 88766554
No 19
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.27 E-value=4.5e-11 Score=84.79 Aligned_cols=75 Identities=27% Similarity=0.384 Sum_probs=59.6
Q ss_pred ccchHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEe
Q psy7827 59 IDNPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFI 137 (140)
Q Consensus 59 ~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~ 137 (140)
+....+....+..+. +.++.+|||+|||+|.++..+++..++.++|+++|+++.+++.| +++..+++ .+++.++
T Consensus 23 ~t~~~~r~~~l~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~---~~~v~~~ 97 (198)
T PRK00377 23 MTKEEIRALALSKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV---LNNIVLI 97 (198)
T ss_pred CCHHHHHHHHHHHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC---CCCeEEE
Confidence 444555555556665 78899999999999999999998766667899999999999999 99888774 2356665
Q ss_pred e
Q psy7827 138 C 138 (140)
Q Consensus 138 ~ 138 (140)
+
T Consensus 98 ~ 98 (198)
T PRK00377 98 K 98 (198)
T ss_pred E
Confidence 4
No 20
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.27 E-value=5.4e-11 Score=77.51 Aligned_cols=63 Identities=33% Similarity=0.462 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCC
Q psy7827 62 PVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHY 127 (140)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~ 127 (140)
..+...+++.+. +.++++|||+|||+|..+..+++.. +.++++++|+++.+++.+ +++...+.
T Consensus 5 ~~~~~~~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~ 68 (124)
T TIGR02469 5 REVRALTLSKLR--LRPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGV 68 (124)
T ss_pred HHHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCC
Confidence 445566667665 6678899999999999999999986 347899999999999999 88877665
No 21
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.25 E-value=5.8e-11 Score=83.66 Aligned_cols=59 Identities=24% Similarity=0.306 Sum_probs=50.4
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
++++.+|||+|||+|..+..+++.. +.++|+|+|+++.|++.| +++.+++.+ +++++++
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~----~i~~~~~ 102 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLK----NVTVVHG 102 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCC----CEEEEec
Confidence 4568999999999999999999875 567899999999999999 998888763 3777654
No 22
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.23 E-value=9.1e-11 Score=86.66 Aligned_cols=58 Identities=28% Similarity=0.363 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 64 QHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 64 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
+.+.+.+.+. +.++.+|||+|||+|.++..+++..++.++|+|+|+|++|++.| ++..
T Consensus 61 ~r~~~~~~~~--~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~ 119 (261)
T PLN02233 61 WKRMAVSWSG--AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQE 119 (261)
T ss_pred HHHHHHHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhh
Confidence 3344455555 67889999999999999999998876667899999999999999 7653
No 23
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.21 E-value=6.9e-11 Score=88.51 Aligned_cols=77 Identities=35% Similarity=0.447 Sum_probs=56.8
Q ss_pred cccCCCCcccchHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCC
Q psy7827 51 RDIGYGSIIDNPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPK 129 (140)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~ 129 (140)
..+|.|.+-+ -+.+++.+.....++++|||+|||||.+++..++.+.. +|+|+|++|.+++.| +|+..+++.
T Consensus 138 ~AFGTG~H~T----T~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~~N~~~- 210 (295)
T PF06325_consen 138 MAFGTGHHPT----TRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAELNGVE- 210 (295)
T ss_dssp SSS-SSHCHH----HHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHHHTT-T-
T ss_pred CcccCCCCHH----HHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHHcCCC-
Confidence 3444553332 34555555555678899999999999999999988643 799999999999999 999999884
Q ss_pred CCCcEEE
Q psy7827 130 LNKRIKF 136 (140)
Q Consensus 130 ~~~~i~~ 136 (140)
.++.+
T Consensus 211 --~~~~v 215 (295)
T PF06325_consen 211 --DRIEV 215 (295)
T ss_dssp --TCEEE
T ss_pred --eeEEE
Confidence 45554
No 24
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.21 E-value=5.8e-11 Score=88.20 Aligned_cols=68 Identities=26% Similarity=0.326 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEee
Q psy7827 64 QHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFIC 138 (140)
Q Consensus 64 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~ 138 (140)
..+.+++.+. +++|++|||||||+|.++..+++.. +.+|+||.+|++..+.+ +++.+.++ .+++++..
T Consensus 50 k~~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl---~~~v~v~~ 118 (273)
T PF02353_consen 50 KLDLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGL---EDRVEVRL 118 (273)
T ss_dssp HHHHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTS---SSTEEEEE
T ss_pred HHHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCC---CCceEEEE
Confidence 3444555555 8999999999999999999999997 45899999999999999 99999887 46777754
No 25
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.20 E-value=2.2e-10 Score=83.85 Aligned_cols=80 Identities=28% Similarity=0.387 Sum_probs=62.4
Q ss_pred CCCcccchHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCc
Q psy7827 55 YGSIIDNPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKR 133 (140)
Q Consensus 55 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~ 133 (140)
...+|..|.-...++..+. +.+|++|||.|+|+|.+|.+|++.+++.|+|+..|+.++..+.| +|++.+++ .++
T Consensus 19 rrtQIiYpkD~~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl---~~~ 93 (247)
T PF08704_consen 19 RRTQIIYPKDISYILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL---DDN 93 (247)
T ss_dssp SSS----HHHHHHHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC---CTT
T ss_pred CCcceeeCchHHHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC---CCC
Confidence 3345556666788888888 99999999999999999999999999999999999999999999 99999988 457
Q ss_pred EEEeec
Q psy7827 134 IKFICE 139 (140)
Q Consensus 134 i~~~~g 139 (140)
|++.++
T Consensus 94 v~~~~~ 99 (247)
T PF08704_consen 94 VTVHHR 99 (247)
T ss_dssp EEEEES
T ss_pred ceeEec
Confidence 777653
No 26
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.19 E-value=1.7e-10 Score=86.14 Aligned_cols=88 Identities=17% Similarity=0.172 Sum_probs=62.1
Q ss_pred ccccccCCCCcccchHHHHHHHHHHhcc--cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhh
Q psy7827 48 LAARDIGYGSIIDNPVQHAEVLELLKDK--LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTT 124 (140)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~ 124 (140)
...+.+..+..++.+.....+...+... ..++.+|||+|||+|.++..+++.. ++.+++|+|+|+.+++.| +|+..
T Consensus 89 g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~ 167 (284)
T TIGR03533 89 GLEFYVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIER 167 (284)
T ss_pred CcEEEECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH
Confidence 3444555555555554433333333211 2345799999999999999999986 567899999999999999 99988
Q ss_pred cCCCCCCCcEEEeec
Q psy7827 125 LHYPKLNKRIKFICE 139 (140)
Q Consensus 125 ~~~~~~~~~i~~~~g 139 (140)
+++ ..+|+++++
T Consensus 168 ~~~---~~~i~~~~~ 179 (284)
T TIGR03533 168 HGL---EDRVTLIQS 179 (284)
T ss_pred cCC---CCcEEEEEC
Confidence 876 346777654
No 27
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.19 E-value=2.2e-10 Score=83.36 Aligned_cols=61 Identities=18% Similarity=0.466 Sum_probs=49.0
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhC-CCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVG-KNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
+.++.+|||+|||+|..+..+++.+. ++++++|+|+|+.|++.| +++...+. ..+++++++
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~---~~~v~~~~~ 113 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS---EIPVEILCN 113 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC---CCCeEEEEC
Confidence 45778999999999999999998753 567899999999999999 88776543 235666543
No 28
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.18 E-value=9e-11 Score=82.32 Aligned_cols=57 Identities=21% Similarity=0.256 Sum_probs=48.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
++.+|||+|||+|.++..++... +.++|+|+|+|+.|++.+ +++.+.+++ +|+++++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~~~----~i~~i~~ 99 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELGLN----NVEIVNG 99 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhCCC----CeEEEec
Confidence 58899999999999999998764 567899999999999999 888877753 4666654
No 29
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.14 E-value=3.5e-10 Score=81.24 Aligned_cols=69 Identities=23% Similarity=0.351 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEee
Q psy7827 64 QHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFIC 138 (140)
Q Consensus 64 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~ 138 (140)
+...+++++.....++.+|||+|||+|.++..++... .+++|+|+|++|++.| +++...+. ..++.+.+
T Consensus 41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~~~---~~~i~~~~ 110 (219)
T TIGR02021 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGRDV---AGNVEFEV 110 (219)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCC---CCceEEEE
Confidence 3455556654223468899999999999999998763 3699999999999999 88876654 23455554
No 30
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.14 E-value=3.3e-10 Score=85.00 Aligned_cols=79 Identities=23% Similarity=0.423 Sum_probs=63.3
Q ss_pred cCCCCcc-cchHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCC
Q psy7827 53 IGYGSII-DNPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKL 130 (140)
Q Consensus 53 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~ 130 (140)
..+||+. ..+.+...+++.+. +.++++|||||||+|.++..+++... +++++|+++.|++.+ +++...+.
T Consensus 12 k~~GQnFL~d~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~--- 83 (294)
T PTZ00338 12 KKFGQHILKNPLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPL--- 83 (294)
T ss_pred CCCCccccCCHHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCC---
Confidence 3455554 46788888888887 78889999999999999999998754 499999999999999 88876653
Q ss_pred CCcEEEeec
Q psy7827 131 NKRIKFICE 139 (140)
Q Consensus 131 ~~~i~~~~g 139 (140)
.++++++++
T Consensus 84 ~~~v~ii~~ 92 (294)
T PTZ00338 84 ASKLEVIEG 92 (294)
T ss_pred CCcEEEEEC
Confidence 246766654
No 31
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.14 E-value=4.9e-10 Score=81.58 Aligned_cols=69 Identities=17% Similarity=0.264 Sum_probs=58.0
Q ss_pred HHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 66 AEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 66 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
..+..++. ..++.+|||+|||+|+.+++++.....+++++++|+++++++.| +++.++++ .++|+++.|
T Consensus 58 ~~L~~l~~--~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl---~~~i~~~~g 127 (234)
T PLN02781 58 LFLSMLVK--IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV---DHKINFIQS 127 (234)
T ss_pred HHHHHHHH--HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC---CCcEEEEEc
Confidence 33334444 56788999999999999999999876778999999999999999 99999988 467888775
No 32
>PLN02244 tocopherol O-methyltransferase
Probab=99.14 E-value=3.2e-10 Score=86.65 Aligned_cols=68 Identities=19% Similarity=0.263 Sum_probs=52.2
Q ss_pred HHHHHHHHHhccc-----CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEe
Q psy7827 64 QHAEVLELLKDKL-----VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFI 137 (140)
Q Consensus 64 ~~~~~~~~l~~~~-----~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~ 137 (140)
+...+++.+. + .++.+|||||||+|.++..+++.+ .++|+|||+|+.|++.| ++....+. ..+|+++
T Consensus 101 ~~~~~l~~~~--~~~~~~~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~---~~~v~~~ 173 (340)
T PLN02244 101 MIEESLAWAG--VPDDDEKRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGL---SDKVSFQ 173 (340)
T ss_pred HHHHHHHhcC--CCcccCCCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCC---CCceEEE
Confidence 3444455544 4 567899999999999999999986 45799999999999999 88776665 2456665
Q ss_pred e
Q psy7827 138 C 138 (140)
Q Consensus 138 ~ 138 (140)
+
T Consensus 174 ~ 174 (340)
T PLN02244 174 V 174 (340)
T ss_pred E
Confidence 4
No 33
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.12 E-value=4.6e-10 Score=84.71 Aligned_cols=88 Identities=17% Similarity=0.199 Sum_probs=61.7
Q ss_pred ccccccCCCCcccchHHHHHHHHHHhcccC--CCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhh
Q psy7827 48 LAARDIGYGSIIDNPVQHAEVLELLKDKLV--PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTT 124 (140)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~ 124 (140)
...+.+..+..++.+.....+...+...++ +..+|||+|||+|.++..++... +..+++++|+|+.+++.| +|+..
T Consensus 101 g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~ 179 (307)
T PRK11805 101 GLEFYVDERVLVPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIER 179 (307)
T ss_pred CcEEEECCCCcCCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHH
Confidence 344455555555555444443333321122 23689999999999999999986 567899999999999999 99988
Q ss_pred cCCCCCCCcEEEeec
Q psy7827 125 LHYPKLNKRIKFICE 139 (140)
Q Consensus 125 ~~~~~~~~~i~~~~g 139 (140)
+++ ..+|+++++
T Consensus 180 ~~l---~~~i~~~~~ 191 (307)
T PRK11805 180 HGL---EDRVTLIES 191 (307)
T ss_pred hCC---CCcEEEEEC
Confidence 876 346777654
No 34
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.11 E-value=4.2e-10 Score=78.09 Aligned_cols=66 Identities=24% Similarity=0.371 Sum_probs=53.9
Q ss_pred HHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEee
Q psy7827 66 AEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFIC 138 (140)
Q Consensus 66 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~ 138 (140)
..+++.+. ..++.+|||+|||+|.+++.+++.. +..+|+++|+++.+++.+ +|+..++++ . +++++
T Consensus 21 ~lL~~~l~--~~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~---~-v~~~~ 87 (170)
T PF05175_consen 21 RLLLDNLP--KHKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLE---N-VEVVQ 87 (170)
T ss_dssp HHHHHHHH--HHTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCT---T-EEEEE
T ss_pred HHHHHHHh--hccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCcc---c-ccccc
Confidence 45556665 3378899999999999999999985 666899999999999999 999998874 2 65554
No 35
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=3.1e-10 Score=84.76 Aligned_cols=62 Identities=39% Similarity=0.463 Sum_probs=53.3
Q ss_pred HHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCC
Q psy7827 65 HAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYP 128 (140)
Q Consensus 65 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~ 128 (140)
-...++++.....++.+|||+|||+|.++++.++.+.. +++|+|++|-+++.| .|+..++++
T Consensus 149 T~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~--~v~g~DiDp~AV~aa~eNa~~N~v~ 211 (300)
T COG2264 149 TSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAK--KVVGVDIDPQAVEAARENARLNGVE 211 (300)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCc--eEEEecCCHHHHHHHHHHHHHcCCc
Confidence 34556666655679999999999999999999998643 699999999999999 999999886
No 36
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.11 E-value=3.2e-10 Score=85.36 Aligned_cols=51 Identities=14% Similarity=0.246 Sum_probs=43.5
Q ss_pred ccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhc
Q psy7827 75 KLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTL 125 (140)
Q Consensus 75 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~ 125 (140)
.++++.+|||+|||+|..+..|++......+++++|+|++|++.| +++...
T Consensus 60 ~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~ 111 (301)
T TIGR03438 60 ATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD 111 (301)
T ss_pred hhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh
Confidence 356778999999999999999999874346799999999999999 887653
No 37
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.11 E-value=3.3e-10 Score=80.35 Aligned_cols=57 Identities=26% Similarity=0.278 Sum_probs=46.4
Q ss_pred HHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCC
Q psy7827 67 EVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYP 128 (140)
Q Consensus 67 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~ 128 (140)
.+++.+. ..++.+|||+|||+|..+..+++.. .+|+|+|+|+.|++.+ ++....++.
T Consensus 21 ~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~~~~~ 78 (197)
T PRK11207 21 EVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAAENLD 78 (197)
T ss_pred HHHHhcc--cCCCCcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 4455554 5567899999999999999999874 3699999999999999 877776653
No 38
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.11 E-value=5.6e-10 Score=82.94 Aligned_cols=58 Identities=21% Similarity=0.294 Sum_probs=50.3
Q ss_pred chHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 61 NPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 61 ~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
.+.+.+.+++.+. +.++.+|||+|||+|.++..+++.+. +++|+|+++.|++.+ +++.
T Consensus 27 ~~~i~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~ 85 (272)
T PRK00274 27 DENILDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFA 85 (272)
T ss_pred CHHHHHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhc
Confidence 4567778888776 77889999999999999999999863 599999999999999 7663
No 39
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.10 E-value=4.2e-10 Score=82.69 Aligned_cols=57 Identities=21% Similarity=0.292 Sum_probs=46.9
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
.++.+|||+|||+|.++..+++.. .+|+|+|+|++|++.| +++...++ ..+++++++
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~---~~~v~~~~~ 100 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGV---SDNMQFIHC 100 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCC---ccceEEEEc
Confidence 456799999999999999999874 3599999999999999 88877765 345666553
No 40
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.10 E-value=6.9e-10 Score=86.39 Aligned_cols=87 Identities=22% Similarity=0.299 Sum_probs=61.6
Q ss_pred cccccccccCCCCcccchHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 45 KYMLAARDIGYGSIIDNPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 45 ~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
.|....+.+..+..++.+.....+...+. .+.++.+|||+|||+|.++..++... +..+++|+|+|+.|++.| +|+.
T Consensus 219 ~F~G~~f~V~p~vLIPRpeTE~LVe~aL~-~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~ 296 (423)
T PRK14966 219 EFYGRRFAVNPNVLIPRPETEHLVEAVLA-RLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAA 296 (423)
T ss_pred eecCcEEEeCCCccCCCccHHHHHHHhhh-ccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHH
Confidence 45555556666666655544333333222 24566799999999999999998875 567899999999999999 9987
Q ss_pred hcCCCCCCCcEEEee
Q psy7827 124 TLHYPKLNKRIKFIC 138 (140)
Q Consensus 124 ~~~~~~~~~~i~~~~ 138 (140)
.++. ++++++
T Consensus 297 ~~g~-----rV~fi~ 306 (423)
T PRK14966 297 DLGA-----RVEFAH 306 (423)
T ss_pred HcCC-----cEEEEE
Confidence 7653 455554
No 41
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.10 E-value=4.5e-10 Score=80.20 Aligned_cols=61 Identities=26% Similarity=0.402 Sum_probs=55.1
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
..+..+||||||++|+.++++++..+++++|+++|++++..+.| +++.+.++ .++|+++.|
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~---~~~I~~~~g 104 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL---DDRIEVIEG 104 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG---GGGEEEEES
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC---CCcEEEEEe
Confidence 45678999999999999999999987789999999999999999 99999988 578999876
No 42
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.10 E-value=3.8e-10 Score=80.38 Aligned_cols=58 Identities=17% Similarity=0.289 Sum_probs=48.2
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
.++.+|||+|||+|..+..+++.. +..+++|+|+|++|++.| +++...+.. +++++++
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~----~v~~~~~ 97 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLT----NLRLLCG 97 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCC----CEEEEec
Confidence 367899999999999999999886 556899999999999999 888776642 4666553
No 43
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.09 E-value=6.9e-10 Score=81.44 Aligned_cols=60 Identities=35% Similarity=0.455 Sum_probs=47.7
Q ss_pred HHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCC
Q psy7827 66 AEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHY 127 (140)
Q Consensus 66 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~ 127 (140)
..+++.+...+.++.+|||+|||+|.++..+++.. . .+++|+|+|+.+++.| +|+..+++
T Consensus 107 ~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g-~-~~v~giDis~~~l~~A~~n~~~~~~ 167 (250)
T PRK00517 107 RLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLG-A-KKVLAVDIDPQAVEAARENAELNGV 167 (250)
T ss_pred HHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcC-C-CeEEEEECCHHHHHHHHHHHHHcCC
Confidence 33445544335688999999999999999877764 2 3699999999999999 99888776
No 44
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.07 E-value=9.3e-10 Score=82.18 Aligned_cols=89 Identities=24% Similarity=0.332 Sum_probs=60.4
Q ss_pred ccccccccCCCCcccchH---HHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hc
Q psy7827 46 YMLAARDIGYGSIIDNPV---QHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SN 121 (140)
Q Consensus 46 y~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~ 121 (140)
|....+.+..+..++.+. +...+++.+.. ..+..+|||+|||+|.+++.++... +..+++|+|+|+.+++.| +|
T Consensus 80 f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~-~~~~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n 157 (284)
T TIGR00536 80 FYGLEFFVNEHVLIPRPETEELVEKALASLIS-QNPILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEEN 157 (284)
T ss_pred EcCeEEEECCCCcCCCCccHHHHHHHHHHhhh-cCCCCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHH
Confidence 334444455554444443 33333333320 1223699999999999999999986 457899999999999999 99
Q ss_pred hhhcCCCCCCCcEEEeec
Q psy7827 122 VTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 122 ~~~~~~~~~~~~i~~~~g 139 (140)
+..+++ ..+++++++
T Consensus 158 ~~~~~~---~~~v~~~~~ 172 (284)
T TIGR00536 158 AEKNQL---EHRVEFIQS 172 (284)
T ss_pred HHHcCC---CCcEEEEEC
Confidence 888776 345777653
No 45
>PLN02476 O-methyltransferase
Probab=99.07 E-value=1.8e-09 Score=80.27 Aligned_cols=74 Identities=16% Similarity=0.262 Sum_probs=62.2
Q ss_pred chHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 61 NPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 61 ~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
.+.....+..++. ..+.++||||||++|+.+++++...+++++++++|.+++..+.| +++++.|+ .++|+++.|
T Consensus 103 ~~~~g~lL~~L~~--~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl---~~~I~li~G 177 (278)
T PLN02476 103 SPDQAQLLAMLVQ--ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV---SHKVNVKHG 177 (278)
T ss_pred CHHHHHHHHHHHH--hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC---CCcEEEEEc
Confidence 4544444555555 66789999999999999999999887788999999999999999 99999998 468998876
No 46
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.07 E-value=5.9e-10 Score=78.96 Aligned_cols=57 Identities=23% Similarity=0.250 Sum_probs=46.2
Q ss_pred HHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCC
Q psy7827 66 AEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHY 127 (140)
Q Consensus 66 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~ 127 (140)
..+.+.+. ..++.+|||+|||+|.++.++++.. .+|+|+|+|+.|++.+ ++....++
T Consensus 20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~ 77 (195)
T TIGR00477 20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENL 77 (195)
T ss_pred HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCC
Confidence 44555555 5567899999999999999999864 3699999999999999 77766554
No 47
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.07 E-value=5.2e-10 Score=79.17 Aligned_cols=57 Identities=21% Similarity=0.363 Sum_probs=48.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
...++||||||+|.++..+++.. ++.+++|+|+++.+++.| +++...++. +|+++++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~----ni~~i~~ 73 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLK----NLHVLCG 73 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCC----CEEEEcc
Confidence 45699999999999999999986 677899999999999999 888877763 5777654
No 48
>KOG2904|consensus
Probab=99.07 E-value=1.6e-09 Score=79.49 Aligned_cols=92 Identities=22% Similarity=0.312 Sum_probs=71.6
Q ss_pred CccccccccccCCCCcccch---HHHHHHHHHHhc-ccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHH
Q psy7827 43 SRKYMLAARDIGYGSIIDNP---VQHAEVLELLKD-KLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNH 118 (140)
Q Consensus 43 ~~~y~~~~~~~~~~~~~~~~---~~~~~~~~~l~~-~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~ 118 (140)
...|.+-.+....|..|+.+ .++..+++.+.. ....+..+||+|||+|.+++.++...+ .+.+++||.|+.++..
T Consensus 109 ~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~L 187 (328)
T KOG2904|consen 109 SQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKL 187 (328)
T ss_pred cCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHH
Confidence 34677766667777777765 445555665542 123556899999999999999999985 7899999999999999
Q ss_pred H-hchhhcCCCCCCCcEEEee
Q psy7827 119 A-SNVTTLHYPKLNKRIKFIC 138 (140)
Q Consensus 119 a-~~~~~~~~~~~~~~i~~~~ 138 (140)
| +|+..+++ .++|.++|
T Consensus 188 a~eN~qr~~l---~g~i~v~~ 205 (328)
T KOG2904|consen 188 AKENAQRLKL---SGRIEVIH 205 (328)
T ss_pred HHHHHHHHhh---cCceEEEe
Confidence 9 99999988 57787764
No 49
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.07 E-value=3.6e-10 Score=82.35 Aligned_cols=60 Identities=30% Similarity=0.419 Sum_probs=52.8
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
+....+|||+|||+|.+++.++++.. +.+++|||+++++.+.| ++++.++. .++|+++++
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l---~~ri~v~~~ 102 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPL---EERIQVIEA 102 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcc---hhceeEehh
Confidence 44588999999999999999999973 48899999999999999 99988776 678988764
No 50
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.06 E-value=8.8e-10 Score=86.99 Aligned_cols=68 Identities=32% Similarity=0.414 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 63 VQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
.+...+++.+. +.++.+|||+|||+|.+++.+++... +++|+|+|++|++.| +|+..++++ +++++++
T Consensus 284 ~l~~~vl~~l~--~~~~~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~----~v~~~~~ 352 (443)
T PRK13168 284 KMVARALEWLD--PQPGDRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGLD----NVTFYHA 352 (443)
T ss_pred HHHHHHHHHhc--CCCCCEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCCC----ceEEEEe
Confidence 34555556555 56788999999999999999998853 599999999999999 998887763 4666554
No 51
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=9.3e-10 Score=79.98 Aligned_cols=75 Identities=29% Similarity=0.473 Sum_probs=63.8
Q ss_pred cccchHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEE
Q psy7827 58 IIDNPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKF 136 (140)
Q Consensus 58 ~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~ 136 (140)
++-.|.-...++..+. +.++++|+|.|+|+|.++.+|+...++.|+|+++|+.++..+.| +|+.+.++. ++|++
T Consensus 76 QiIyPKD~~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~---d~v~~ 150 (256)
T COG2519 76 QIIYPKDAGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG---DRVTL 150 (256)
T ss_pred ceecCCCHHHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc---cceEE
Confidence 3444545677788887 99999999999999999999999999999999999999999999 999998773 34555
Q ss_pred e
Q psy7827 137 I 137 (140)
Q Consensus 137 ~ 137 (140)
.
T Consensus 151 ~ 151 (256)
T COG2519 151 K 151 (256)
T ss_pred E
Confidence 4
No 52
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.05 E-value=1.7e-09 Score=80.94 Aligned_cols=59 Identities=32% Similarity=0.402 Sum_probs=47.3
Q ss_pred HHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCC
Q psy7827 67 EVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHY 127 (140)
Q Consensus 67 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~ 127 (140)
..++.+.....++++|||+|||+|.++..+++.. ..+++|+|+|+.+++.| +|+..+++
T Consensus 148 l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g--~~~V~avDid~~al~~a~~n~~~n~~ 207 (288)
T TIGR00406 148 LCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLG--AAKVVGIDIDPLAVESARKNAELNQV 207 (288)
T ss_pred HHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHcCC
Confidence 3444444334678999999999999999888764 34799999999999999 99887776
No 53
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.05 E-value=6.5e-10 Score=70.52 Aligned_cols=46 Identities=30% Similarity=0.535 Sum_probs=36.0
Q ss_pred EEEEcCCCChHHHHHHHHh--CCCCeEEEEcCCHHHHHHH-hchhhcCC
Q psy7827 82 VLDVGSGSGYLTTCFAHMV--GKNGSVVGVEHIPEIVNHA-SNVTTLHY 127 (140)
Q Consensus 82 vLDiGcG~G~~~~~la~~~--~~~~~v~gvD~s~~~i~~a-~~~~~~~~ 127 (140)
|||+|||+|..+..+++.+ ++..+++|+|+|++|++.+ ++....+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~ 49 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP 49 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC
Confidence 7999999999999999987 2336899999999999999 88876544
No 54
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=1.1e-09 Score=81.58 Aligned_cols=81 Identities=22% Similarity=0.299 Sum_probs=59.3
Q ss_pred cccccccccCCCCcccchHHHHHHHHHHhcccCCCC-EEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hch
Q psy7827 45 KYMLAARDIGYGSIIDNPVQHAEVLELLKDKLVPGA-KVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNV 122 (140)
Q Consensus 45 ~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~ 122 (140)
.|..-.+.+..+..++.+.....+-..+. ...... +|||+|||+|.+++.++..+ +.++|+|+|+|+.+++.| +|+
T Consensus 77 ~f~gl~~~v~~~vliPr~dTe~Lve~~l~-~~~~~~~~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na 154 (280)
T COG2890 77 EFGGLRFKVDEGVLIPRPDTELLVEAALA-LLLQLDKRILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENA 154 (280)
T ss_pred eecceeeeeCCCceecCCchHHHHHHHHH-hhhhcCCcEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHH
Confidence 45555556666666666655433333221 122222 79999999999999999997 567899999999999999 999
Q ss_pred hhcCC
Q psy7827 123 TTLHY 127 (140)
Q Consensus 123 ~~~~~ 127 (140)
..+++
T Consensus 155 ~~~~l 159 (280)
T COG2890 155 ERNGL 159 (280)
T ss_pred HHcCC
Confidence 99885
No 55
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.02 E-value=1.7e-09 Score=81.91 Aligned_cols=56 Identities=20% Similarity=0.231 Sum_probs=47.7
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
.++.+|||+|||+|.++..+++.. .+|+|+|+++.+++.| +++..++++ +++|+++
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l~----~v~~~~~ 228 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGLT----NVQFQAL 228 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCCC----ceEEEEc
Confidence 356899999999999999999864 3699999999999999 999888763 5777654
No 56
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.02 E-value=1.8e-09 Score=69.91 Aligned_cols=56 Identities=32% Similarity=0.434 Sum_probs=48.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 79 GAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 79 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
|.+|||+|||+|.++..+++.. ..+++|+|+++..++.| .++...+. .++++++++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~---~~~~~~~~~ 57 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGL---DDRVEVIVG 57 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTT---TTTEEEEES
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccC---CceEEEEEC
Confidence 4689999999999999999986 46799999999999999 99988876 457887764
No 57
>PRK05785 hypothetical protein; Provisional
Probab=99.02 E-value=1.6e-09 Score=78.52 Aligned_cols=56 Identities=23% Similarity=0.283 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hc
Q psy7827 64 QHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SN 121 (140)
Q Consensus 64 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~ 121 (140)
+...++..+.....++.+|||+|||+|.++..+++.+ +.+|+|+|+|++|++.| ++
T Consensus 37 wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~ 93 (226)
T PRK05785 37 WRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA 93 (226)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc
Confidence 4445555554223457899999999999999999885 35799999999999999 65
No 58
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.01 E-value=2.2e-09 Score=85.96 Aligned_cols=93 Identities=16% Similarity=0.225 Sum_probs=66.4
Q ss_pred CccccccccccCCCCcccchHHHHH---HHHHHhcc----------------------cCCCCEEEEEcCCCChHHHHHH
Q psy7827 43 SRKYMLAARDIGYGSIIDNPVQHAE---VLELLKDK----------------------LVPGAKVLDVGSGSGYLTTCFA 97 (140)
Q Consensus 43 ~~~y~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~----------------------~~~~~~vLDiGcG~G~~~~~la 97 (140)
...|....+.+..+..|+.|..... +++.+... ..++.+|||+|||+|.+++.++
T Consensus 78 ~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la 157 (506)
T PRK01544 78 VKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLL 157 (506)
T ss_pred cCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHH
Confidence 3356666777788877877654333 33332100 0134689999999999999999
Q ss_pred HHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 98 HMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 98 ~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
... +.++++|+|+|+.+++.| +|+..+++ .++++++++
T Consensus 158 ~~~-p~~~v~avDis~~al~~A~~N~~~~~l---~~~v~~~~~ 196 (506)
T PRK01544 158 CEL-PNANVIATDISLDAIEVAKSNAIKYEV---TDRIQIIHS 196 (506)
T ss_pred HHC-CCCeEEEEECCHHHHHHHHHHHHHcCC---ccceeeeec
Confidence 875 567899999999999999 99887776 345666543
No 59
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.01 E-value=3.9e-09 Score=75.81 Aligned_cols=72 Identities=22% Similarity=0.330 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEee
Q psy7827 62 PVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFIC 138 (140)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~ 138 (140)
+.....+..++. ..+.++|||||++.|+.+++++.....+++++++|+++++.+.| +++.+.++. ++|+++.
T Consensus 45 ~e~g~~L~~L~~--~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~---~~i~~~~ 117 (219)
T COG4122 45 PETGALLRLLAR--LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD---DRIELLL 117 (219)
T ss_pred hhHHHHHHHHHH--hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc---ceEEEEe
Confidence 445555555565 67889999999999999999999997689999999999999999 999999994 5677765
No 60
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=3.6e-09 Score=73.89 Aligned_cols=71 Identities=27% Similarity=0.339 Sum_probs=52.6
Q ss_pred chHHHHHHHHHHh-cccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEee
Q psy7827 61 NPVQHAEVLELLK-DKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFIC 138 (140)
Q Consensus 61 ~~~~~~~~~~~l~-~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~ 138 (140)
.+.+.+.++.... ...-.+..|+|+|||||.+++..+-.+.. +|+|||+++++++.+ +|..+. .++|+|++
T Consensus 27 p~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~--~V~~vdiD~~a~ei~r~N~~~l-----~g~v~f~~ 99 (198)
T COG2263 27 PAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGAS--RVLAVDIDPEALEIARANAEEL-----LGDVEFVV 99 (198)
T ss_pred ChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCc--EEEEEecCHHHHHHHHHHHHhh-----CCceEEEE
Confidence 3444555544442 12346778999999999999998888644 799999999999999 998873 34666654
No 61
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.01 E-value=2.2e-09 Score=79.19 Aligned_cols=65 Identities=22% Similarity=0.308 Sum_probs=54.0
Q ss_pred CCCcc-cchHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhh
Q psy7827 55 YGSII-DNPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTT 124 (140)
Q Consensus 55 ~~~~~-~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~ 124 (140)
+||+. ..+.+.+.+++.+. +.++.+|||+|||+|.++..+++... +++++|+++.+++.+ +++..
T Consensus 7 ~GQnfl~d~~~~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~ 73 (258)
T PRK14896 7 LGQHFLIDDRVVDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIA 73 (258)
T ss_pred CCccccCCHHHHHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhcc
Confidence 34433 46778888888886 77889999999999999999999843 599999999999999 87654
No 62
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.00 E-value=2.5e-09 Score=81.19 Aligned_cols=56 Identities=29% Similarity=0.543 Sum_probs=43.1
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEee
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFIC 138 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~ 138 (140)
.++.+|||||||+|.++..+++. .++|+|||++++|++.| ++....+. ..+|++++
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~---~~~i~~~~ 186 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPV---TSTIEYLC 186 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCc---ccceeEEe
Confidence 35679999999999999999875 34699999999999999 77554332 23455554
No 63
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.00 E-value=1.5e-09 Score=75.06 Aligned_cols=54 Identities=24% Similarity=0.442 Sum_probs=45.6
Q ss_pred HHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhh
Q psy7827 66 AEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTT 124 (140)
Q Consensus 66 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~ 124 (140)
+.+++.+. +.++.+|||+|||+|.++..+++.. .+++++|+++.+++.+ +++..
T Consensus 3 ~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~ 57 (169)
T smart00650 3 DKIVRAAN--LRPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAA 57 (169)
T ss_pred HHHHHhcC--CCCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhcc
Confidence 45566665 6778899999999999999999874 3699999999999999 88753
No 64
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.00 E-value=1.4e-09 Score=80.68 Aligned_cols=46 Identities=22% Similarity=0.370 Sum_probs=38.6
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCC--CeEEEEcCCHHHHHHH-hch
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKN--GSVVGVEHIPEIVNHA-SNV 122 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~i~~a-~~~ 122 (140)
..+.+|||+|||+|.++..+++..... .+++|+|+|+.|++.| ++.
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~ 132 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY 132 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC
Confidence 355789999999999999999876432 3699999999999999 764
No 65
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.00 E-value=2.9e-09 Score=76.69 Aligned_cols=60 Identities=27% Similarity=0.381 Sum_probs=46.6
Q ss_pred HHHHHHHHhc-ccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCC
Q psy7827 65 HAEVLELLKD-KLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHY 127 (140)
Q Consensus 65 ~~~~~~~l~~-~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~ 127 (140)
...+..++.. ...++.+|||+|||+|.++..+++... +++|+|+|+.|++.| +++...+.
T Consensus 49 ~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~ 110 (230)
T PRK07580 49 RDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGL 110 (230)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCC
Confidence 3445555542 134678999999999999999988743 499999999999999 88776654
No 66
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.00 E-value=2.3e-09 Score=79.41 Aligned_cols=52 Identities=42% Similarity=0.712 Sum_probs=46.1
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCC
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHY 127 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~ 127 (140)
+.++.+|||+|||+|..+..+++..++.++|+|+|+++.|++.| ++....+.
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~ 127 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY 127 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC
Confidence 67899999999999999988888876777899999999999999 88777665
No 67
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.99 E-value=2.2e-09 Score=82.97 Aligned_cols=59 Identities=22% Similarity=0.226 Sum_probs=47.9
Q ss_pred HHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCC
Q psy7827 66 AEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHY 127 (140)
Q Consensus 66 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~ 127 (140)
+.+++.+. ...+.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.| +|+..++.
T Consensus 218 rllL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~ 277 (378)
T PRK15001 218 RFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMP 277 (378)
T ss_pred HHHHHhCC--cccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCc
Confidence 34455553 2335699999999999999999985 667899999999999999 99877754
No 68
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.99 E-value=2.1e-09 Score=84.52 Aligned_cols=66 Identities=32% Similarity=0.402 Sum_probs=53.3
Q ss_pred HHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 65 HAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 65 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
...+.+.+. +.++.+|||+|||+|.+++.+++... +|+|+|+++.+++.| +|+..++++ +++++++
T Consensus 281 ~~~~~~~l~--~~~~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~----nv~~~~~ 347 (431)
T TIGR00479 281 VDRALEALE--LQGEELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIA----NVEFLAG 347 (431)
T ss_pred HHHHHHHhc--cCCCCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCC----ceEEEeC
Confidence 344455554 56778999999999999999998754 599999999999999 999888763 5777654
No 69
>PRK04266 fibrillarin; Provisional
Probab=98.98 E-value=3e-09 Score=77.04 Aligned_cols=48 Identities=27% Similarity=0.406 Sum_probs=42.6
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhh
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTT 124 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~ 124 (140)
++++.+|||+|||+|.++..+++.++ .++|+|+|+++.|++.+ +++.+
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~ 118 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEE 118 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhh
Confidence 77899999999999999999999985 67899999999999977 66543
No 70
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.98 E-value=2.6e-09 Score=76.24 Aligned_cols=47 Identities=21% Similarity=0.271 Sum_probs=40.8
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
+.++.+|||+|||+|..+..+++.. +..+++|||+|++|++.| +++.
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~ 88 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLP 88 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCC
Confidence 5677899999999999999998875 456799999999999999 7653
No 71
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.98 E-value=1.7e-09 Score=79.46 Aligned_cols=53 Identities=25% Similarity=0.397 Sum_probs=44.7
Q ss_pred HHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hc
Q psy7827 66 AEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SN 121 (140)
Q Consensus 66 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~ 121 (140)
..+++.+. ..++.+|||+|||+|.++..+++.. +.++++|+|+|+.|++.| ++
T Consensus 19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~ 72 (255)
T PRK14103 19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER 72 (255)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc
Confidence 44555555 5678999999999999999999986 567899999999999999 53
No 72
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.97 E-value=1.8e-09 Score=79.35 Aligned_cols=56 Identities=21% Similarity=0.372 Sum_probs=46.2
Q ss_pred HHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 65 HAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 65 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
...++..+. +.++.+|||||||+|.++..+++.. +.++++|+|+|+.|++.| +++.
T Consensus 20 ~~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~ 76 (258)
T PRK01683 20 ARDLLARVP--LENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLP 76 (258)
T ss_pred HHHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCC
Confidence 344455554 5678999999999999999999886 567899999999999999 7753
No 73
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.97 E-value=2.3e-09 Score=77.37 Aligned_cols=49 Identities=31% Similarity=0.478 Sum_probs=44.1
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCC
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYP 128 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~ 128 (140)
.++.+|||+|||.|.++.++|+.+. +|+|+|+++.+++.| .+..+.++.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~gv~ 107 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALESGVN 107 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhcccc
Confidence 3789999999999999999999964 599999999999999 888887764
No 74
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.97 E-value=5.4e-09 Score=76.14 Aligned_cols=56 Identities=29% Similarity=0.445 Sum_probs=46.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEee
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFIC 138 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~ 138 (140)
.+.+|||+|||+|.++..+++.. +..+++|+|+++.+++.| +++...++. ++++++
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~----~~~~~~ 143 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGLD----NVTFLQ 143 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCC----eEEEEE
Confidence 45699999999999999999885 456899999999999999 888877653 455544
No 75
>KOG1541|consensus
Probab=98.97 E-value=9.1e-10 Score=78.57 Aligned_cols=56 Identities=27% Similarity=0.427 Sum_probs=47.0
Q ss_pred chHHHHHHHHHHhcccCC--CCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hc
Q psy7827 61 NPVQHAEVLELLKDKLVP--GAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SN 121 (140)
Q Consensus 61 ~~~~~~~~~~~l~~~~~~--~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~ 121 (140)
+..+..+.++++. ++. +.-|||||||+|..+..+...+. ..+|+|+|+.|++.| +.
T Consensus 33 Q~em~eRaLELLa--lp~~~~~~iLDIGCGsGLSg~vL~~~Gh---~wiGvDiSpsML~~a~~~ 91 (270)
T KOG1541|consen 33 QAEMAERALELLA--LPGPKSGLILDIGCGSGLSGSVLSDSGH---QWIGVDISPSMLEQAVER 91 (270)
T ss_pred hHHHHHHHHHHhh--CCCCCCcEEEEeccCCCcchheeccCCc---eEEeecCCHHHHHHHHHh
Confidence 4567788888887 655 67899999999999999888764 499999999999999 63
No 76
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.97 E-value=3.8e-09 Score=79.94 Aligned_cols=60 Identities=23% Similarity=0.260 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcc-cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhc
Q psy7827 63 VQHAEVLELLKDK-LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTL 125 (140)
Q Consensus 63 ~~~~~~~~~l~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~ 125 (140)
.+.+.+++++... ..++.+|||+|||+|.++..+++.. .+|+|+|+|+.|++.| ++....
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~~ 189 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKEA 189 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhc
Confidence 3456666666521 1257899999999999999999863 3699999999999999 887654
No 77
>KOG1270|consensus
Probab=98.95 E-value=1.6e-09 Score=78.99 Aligned_cols=40 Identities=35% Similarity=0.633 Sum_probs=37.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hc
Q psy7827 79 GAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SN 121 (140)
Q Consensus 79 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~ 121 (140)
|++|||+|||+|.++.+|++.+. +|+|||++++|++.| ++
T Consensus 90 g~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h 130 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEH 130 (282)
T ss_pred CceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHh
Confidence 57899999999999999999974 499999999999999 77
No 78
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.95 E-value=1.5e-09 Score=77.21 Aligned_cols=51 Identities=22% Similarity=0.439 Sum_probs=45.2
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCC
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHY 127 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~ 127 (140)
+.+..+|.|+|||+|..|..|+++. +.+.|+|+|-|++|++.| +++....+
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rlp~~~f 79 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRLPDATF 79 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhCCCCce
Confidence 5577899999999999999999998 788999999999999999 87765543
No 79
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.95 E-value=6.2e-09 Score=77.03 Aligned_cols=53 Identities=21% Similarity=0.254 Sum_probs=48.6
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCC
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYP 128 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~ 128 (140)
+.++.+|||+|||+|..+..+++..+..+.|+++|+++.+++.+ ++++.+++.
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~ 122 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL 122 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC
Confidence 67889999999999999999999886667899999999999999 999988864
No 80
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.94 E-value=9.1e-09 Score=74.19 Aligned_cols=61 Identities=31% Similarity=0.546 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcC
Q psy7827 64 QHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLH 126 (140)
Q Consensus 64 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~ 126 (140)
+...++..+. ..++.+|||+|||+|.++..++..++...+++++|+++.+++.+ +++...+
T Consensus 39 ~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 100 (239)
T PRK00216 39 WRRKTIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG 100 (239)
T ss_pred HHHHHHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc
Confidence 4455566665 55778999999999999999999874357899999999999999 8876543
No 81
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.94 E-value=4.3e-09 Score=73.44 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=42.5
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCC
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHY 127 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~ 127 (140)
..++.+|||+|||+|.++..+++... +++++|+|+++++.+ +++..++.
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~ 66 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNV 66 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCC
Confidence 45668999999999999999998753 699999999999999 88876654
No 82
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.94 E-value=5.7e-09 Score=82.44 Aligned_cols=67 Identities=24% Similarity=0.238 Sum_probs=55.2
Q ss_pred HHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEee
Q psy7827 66 AEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFIC 138 (140)
Q Consensus 66 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~ 138 (140)
..+...+. +.++.+|||+|||+|..+..+++..++.++|+++|+++.+++.+ +++.+.++. +|++++
T Consensus 240 ~lv~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~----~v~~~~ 307 (444)
T PRK14902 240 MLVAPALD--PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT----NIETKA 307 (444)
T ss_pred HHHHHHhC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----eEEEEe
Confidence 34444555 67889999999999999999999876678999999999999999 999888874 355554
No 83
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.93 E-value=5.7e-09 Score=78.25 Aligned_cols=70 Identities=20% Similarity=0.415 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 62 PVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
|-+.+.+++.+. +.++..++|.+||.|..|..+++.+++.++|+|+|.++++++.| +++.. . ++++++++
T Consensus 5 pVll~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~----~ri~~i~~ 75 (296)
T PRK00050 5 PVLLDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--F----GRFTLVHG 75 (296)
T ss_pred cccHHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--C----CcEEEEeC
Confidence 456778888887 77889999999999999999999986678999999999999999 87754 1 36777764
No 84
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.93 E-value=7.6e-09 Score=76.06 Aligned_cols=59 Identities=22% Similarity=0.321 Sum_probs=51.4
Q ss_pred cchHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 60 DNPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 60 ~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
..+.+.+.+++.+. +.++.+|||+|||+|.++..+++.+.. ++++|+++.+++.+ +++.
T Consensus 13 ~d~~i~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~~---v~~iE~d~~~~~~l~~~~~ 72 (253)
T TIGR00755 13 IDESVIQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAKK---VTAIEIDPRLAEILRKLLS 72 (253)
T ss_pred CCHHHHHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCCc---EEEEECCHHHHHHHHHHhC
Confidence 45777888888876 778899999999999999999998744 99999999999999 7764
No 85
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.93 E-value=6.8e-09 Score=80.29 Aligned_cols=65 Identities=17% Similarity=0.240 Sum_probs=52.6
Q ss_pred HHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 68 VLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 68 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
+.+.+. ...+..+||||||+|.++..+|+.. ++..++|+|+++.+++.| +++...++. +|.++++
T Consensus 114 ~~~~~~--~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~----NV~~i~~ 179 (390)
T PRK14121 114 FLDFIS--KNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLK----NLLIINY 179 (390)
T ss_pred HHHHhc--CCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCC----cEEEEEC
Confidence 344444 3456799999999999999999996 678899999999999999 998887764 4666553
No 86
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.93 E-value=4.8e-09 Score=78.45 Aligned_cols=48 Identities=21% Similarity=0.218 Sum_probs=41.3
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCC
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHY 127 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~ 127 (140)
.++.+|||+|||+|..+.++++.+ .+|+|+|+|+.+++.+ +++...++
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~l 167 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKENL 167 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcCC
Confidence 345699999999999999999864 3699999999999999 88777665
No 87
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.92 E-value=6.6e-09 Score=82.10 Aligned_cols=65 Identities=26% Similarity=0.401 Sum_probs=53.6
Q ss_pred HHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEee
Q psy7827 68 VLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFIC 138 (140)
Q Consensus 68 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~ 138 (140)
....+. +.++.+|||+|||+|..+..+++..+..++|+|+|+|+.+++.+ +++...+++ +|++++
T Consensus 242 ~~~~l~--~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~----~v~~~~ 307 (445)
T PRK14904 242 ACLLLN--PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT----IIETIE 307 (445)
T ss_pred HHHhcC--CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC----eEEEEe
Confidence 334444 66889999999999999999999876667899999999999999 999888874 455554
No 88
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.91 E-value=1.4e-08 Score=74.37 Aligned_cols=73 Identities=16% Similarity=0.219 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 62 PVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
+.....+..++. ..+.++|||||+++|+.+++++...+++++++++|++++..+.| +++.+.++ .++|+++.|
T Consensus 65 ~~~g~lL~~l~~--~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~---~~~I~~~~G 138 (247)
T PLN02589 65 ADEGQFLNMLLK--LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV---AHKIDFREG 138 (247)
T ss_pred HHHHHHHHHHHH--HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC---CCceEEEec
Confidence 444444444444 55778999999999999999999887789999999999999999 99999998 478999876
No 89
>PRK08317 hypothetical protein; Provisional
Probab=98.91 E-value=1.2e-08 Score=73.25 Aligned_cols=56 Identities=38% Similarity=0.608 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hc
Q psy7827 64 QHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SN 121 (140)
Q Consensus 64 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~ 121 (140)
..+.+++.+. +.++.+|||+|||+|.++..+++.+++.++++|+|+++.+++.+ ++
T Consensus 7 ~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~ 63 (241)
T PRK08317 7 YRARTFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER 63 (241)
T ss_pred HHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence 3455566666 77889999999999999999999875667899999999999999 66
No 90
>PLN02672 methionine S-methyltransferase
Probab=98.91 E-value=8.9e-09 Score=88.05 Aligned_cols=93 Identities=18% Similarity=0.137 Sum_probs=66.9
Q ss_pred cccccccccCCCCcccchHHHHHHHHHHhcccC---CCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-h
Q psy7827 45 KYMLAARDIGYGSIIDNPVQHAEVLELLKDKLV---PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-S 120 (140)
Q Consensus 45 ~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~ 120 (140)
.|....+.+..+..+++++....+ +.+..... ++.+|||+|||+|.+++.+++.. +.++++|+|+|+.+++.| +
T Consensus 83 ~F~~l~~~V~p~VLIPRpeTE~lv-e~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~ 160 (1082)
T PLN02672 83 NRKKLTMMEIPSIFIPEDWSFTFY-EGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWI 160 (1082)
T ss_pred EecCCceeeCCCcccCchhHHHHH-HHHHhcccccCCCCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHH
Confidence 444555666777777777655443 33542111 34689999999999999999986 456899999999999999 9
Q ss_pred chhhcCCC------------CCCCcEEEeec
Q psy7827 121 NVTTLHYP------------KLNKRIKFICE 139 (140)
Q Consensus 121 ~~~~~~~~------------~~~~~i~~~~g 139 (140)
|+..++++ .+.++|+|+++
T Consensus 161 Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~s 191 (1082)
T PLN02672 161 NLYLNALDDDGLPVYDGEGKTLLDRVEFYES 191 (1082)
T ss_pred HHHHcCcccccccccccccccccccEEEEEC
Confidence 99876532 12357888764
No 91
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.91 E-value=9.4e-09 Score=77.42 Aligned_cols=67 Identities=21% Similarity=0.234 Sum_probs=54.6
Q ss_pred HHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 66 AEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 66 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
..+.+.+. +.++.+|||||||+|.++..+++.. +..+++++|. +.+++.+ +++.+.++ .++|+++.+
T Consensus 139 ~~l~~~~~--~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl---~~rv~~~~~ 206 (306)
T TIGR02716 139 QLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGV---ADRMRGIAV 206 (306)
T ss_pred HHHHHHcC--CCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCc---cceEEEEec
Confidence 34445444 6677899999999999999999997 6678999997 7899999 99888876 467877764
No 92
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.91 E-value=2.1e-08 Score=71.34 Aligned_cols=71 Identities=17% Similarity=0.162 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 62 PVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
..+.+.+..++.. ..++.+|||+|||+|.+++.++... ..+|+++|+++.+++.+ +|++.++.+ +++++++
T Consensus 38 d~v~e~l~~~l~~-~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~----~v~~~~~ 109 (199)
T PRK10909 38 DRVRETLFNWLAP-VIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAG----NARVVNT 109 (199)
T ss_pred HHHHHHHHHHHhh-hcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCC----cEEEEEc
Confidence 4444556666541 2467899999999999998654443 24799999999999999 999888763 5666653
No 93
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.90 E-value=6.3e-09 Score=73.45 Aligned_cols=58 Identities=26% Similarity=0.276 Sum_probs=44.1
Q ss_pred HHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCC
Q psy7827 66 AEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYP 128 (140)
Q Consensus 66 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~ 128 (140)
..+++.+. ..++.++||+|||.|..+++||+++-. |+++|+|+..++.+ +...+.+++
T Consensus 20 s~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~G~~---VtAvD~s~~al~~l~~~a~~~~l~ 78 (192)
T PF03848_consen 20 SEVLEAVP--LLKPGKALDLGCGEGRNALYLASQGFD---VTAVDISPVALEKLQRLAEEEGLD 78 (192)
T ss_dssp HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHTT-E---EEEEESSHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHhhcCce
Confidence 33445554 456789999999999999999999654 99999999999999 766666653
No 94
>KOG1271|consensus
Probab=98.90 E-value=9.2e-09 Score=71.55 Aligned_cols=105 Identities=18% Similarity=0.258 Sum_probs=69.2
Q ss_pred CCCHHHHHHHHhCCCCCCCCCC-CCccccccccccCCCCcccchHHHHHHHHHHh-cccCCC-CEEEEEcCCCChHHHHH
Q psy7827 20 IKSPRVIDAMIHIDRGHFCAHN-DSRKYMLAARDIGYGSIIDNPVQHAEVLELLK-DKLVPG-AKVLDVGSGSGYLTTCF 96 (140)
Q Consensus 20 ~~~~~~~~a~~~~~r~~f~~~~-~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~-~~vLDiGcG~G~~~~~l 96 (140)
+..++++++..+..-++|...+ ....|.... ....++.++.+... ..+... .+|||+|||+|.+...|
T Consensus 15 LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~~---------ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L 85 (227)
T KOG1271|consen 15 LGTKSYWDAAYELELTNFREHGDEGEVWFGED---------AEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQL 85 (227)
T ss_pred cchHHHHHHHHHHHHhhcccCCCccceecCCc---------HHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHH
Confidence 6788899988887777776433 234444321 12223333333322 012333 49999999999999999
Q ss_pred HHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEe
Q psy7827 97 AHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFI 137 (140)
Q Consensus 97 a~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~ 137 (140)
++.. -.+.++|||.|+.+++.| ...+..+++ +.|+|.
T Consensus 86 ~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~~~---n~I~f~ 123 (227)
T KOG1271|consen 86 AKEG-FQSKLTGVDYSEKAVELAQNIAERDGFS---NEIRFQ 123 (227)
T ss_pred HHhc-CCCCccccccCHHHHHHHHHHHHhcCCC---cceeEE
Confidence 9986 345699999999999999 666666764 336553
No 95
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.90 E-value=9.4e-09 Score=81.01 Aligned_cols=67 Identities=27% Similarity=0.389 Sum_probs=55.3
Q ss_pred HHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEee
Q psy7827 66 AEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFIC 138 (140)
Q Consensus 66 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~ 138 (140)
..+...+. +.++.+|||+|||+|..+..+++..+..++|+++|+++.+++.+ +++...++. +|++++
T Consensus 242 ~l~~~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~----~v~~~~ 309 (434)
T PRK14901 242 QLVAPLLD--PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK----SIKILA 309 (434)
T ss_pred HHHHHHhC--CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC----eEEEEe
Confidence 33444555 67889999999999999999999876678899999999999999 999988874 355544
No 96
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.90 E-value=1.1e-08 Score=80.65 Aligned_cols=60 Identities=27% Similarity=0.395 Sum_probs=52.0
Q ss_pred HHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCC
Q psy7827 67 EVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYP 128 (140)
Q Consensus 67 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~ 128 (140)
.+...+. +.++.+|||+|||+|..|..++...+..++|+++|+++.+++.+ +++.+.+++
T Consensus 228 ~~~~~l~--~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~ 288 (431)
T PRK14903 228 IVPLLME--LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS 288 (431)
T ss_pred HHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 3334455 67889999999999999999999986678999999999999999 999988874
No 97
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=6.9e-09 Score=81.53 Aligned_cols=69 Identities=35% Similarity=0.415 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 62 PVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
..+...+.+++. ..+++++||+-||.|.+++++|+.... |+|+|+++++++.| +|++.+++. +++|..+
T Consensus 279 ekl~~~a~~~~~--~~~~~~vlDlYCGvG~f~l~lA~~~~~---V~gvEi~~~aV~~A~~NA~~n~i~----N~~f~~~ 348 (432)
T COG2265 279 EKLYETALEWLE--LAGGERVLDLYCGVGTFGLPLAKRVKK---VHGVEISPEAVEAAQENAAANGID----NVEFIAG 348 (432)
T ss_pred HHHHHHHHHHHh--hcCCCEEEEeccCCChhhhhhcccCCE---EEEEecCHHHHHHHHHHHHHcCCC----cEEEEeC
Confidence 344555566665 567789999999999999999977655 99999999999999 999999985 4776654
No 98
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.88 E-value=1.1e-08 Score=78.56 Aligned_cols=54 Identities=20% Similarity=0.279 Sum_probs=46.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 79 GAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 79 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
+.+|||++||+|.+++.+++... +|+|||+++++++.| +|+..++++ +++++++
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~~~~~----~v~~~~~ 252 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANNID----NVQIIRM 252 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCC----cEEEEEc
Confidence 35799999999999999998864 599999999999999 999888864 5666653
No 99
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.88 E-value=8.8e-09 Score=74.05 Aligned_cols=55 Identities=24% Similarity=0.293 Sum_probs=45.7
Q ss_pred CEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEee
Q psy7827 80 AKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFIC 138 (140)
Q Consensus 80 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~ 138 (140)
++|||||||+|..+..+++.+ +..+++|+|+|+++++.| +++...++ ..+++++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl---~~~i~~~~ 56 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGL---QGRIRIFY 56 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCC---CcceEEEe
Confidence 379999999999999999886 456899999999999999 88877765 34565543
No 100
>PRK06202 hypothetical protein; Provisional
Probab=98.87 E-value=8.6e-09 Score=74.69 Aligned_cols=50 Identities=26% Similarity=0.312 Sum_probs=40.9
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHh---CCCCeEEEEcCCHHHHHHH-hchhhcC
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMV---GKNGSVVGVEHIPEIVNHA-SNVTTLH 126 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~---~~~~~v~gvD~s~~~i~~a-~~~~~~~ 126 (140)
.++.+|||+|||+|.++..+++.. +++.+++|+|+|++|++.| ++....+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~ 112 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG 112 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC
Confidence 467799999999999999988754 2345899999999999999 7765433
No 101
>PRK14967 putative methyltransferase; Provisional
Probab=98.87 E-value=1.7e-08 Score=72.77 Aligned_cols=50 Identities=36% Similarity=0.392 Sum_probs=42.9
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCC
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHY 127 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~ 127 (140)
+.++.+|||+|||+|.++..+++.. ..+++++|+++.+++.+ +++...++
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~--~~~v~~vD~s~~~l~~a~~n~~~~~~ 84 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAG--AGSVTAVDISRRAVRSARLNALLAGV 84 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhCC
Confidence 5678899999999999999998763 24799999999999999 88876654
No 102
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.87 E-value=1.3e-08 Score=78.81 Aligned_cols=56 Identities=20% Similarity=0.235 Sum_probs=47.0
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
.++.+|||+|||+|.+++.++... .+|+|||+++.+++.| +|+..++++ +++|+++
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~~----~~~~~~~ 288 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGLD----NLSFAAL 288 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCCC----cEEEEEC
Confidence 456899999999999999999664 3699999999999999 999888763 5666653
No 103
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.86 E-value=1.3e-08 Score=75.36 Aligned_cols=55 Identities=29% Similarity=0.358 Sum_probs=46.0
Q ss_pred HHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 65 HAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 65 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
...++..+. +.++.+|||||||+|..+..+++.. .++|+|+|+|+.|++.| +++.
T Consensus 41 ~~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~ 96 (263)
T PTZ00098 41 TTKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNS 96 (263)
T ss_pred HHHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcC
Confidence 455666665 7889999999999999999998764 45799999999999999 7654
No 104
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.85 E-value=1.9e-08 Score=74.33 Aligned_cols=47 Identities=32% Similarity=0.461 Sum_probs=42.2
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
..++.+|||+|||+|.++..++... +..+++|+|+|+.+++.| +++.
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHH
Confidence 4567899999999999999999986 567899999999999999 8876
No 105
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.85 E-value=1.6e-08 Score=78.00 Aligned_cols=54 Identities=20% Similarity=0.234 Sum_probs=46.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 79 GAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 79 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
+.++||++||+|.+++.+++... +|+|||+++.+++.| +|+..++++ +++++++
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~~---~v~~vE~~~~ai~~a~~N~~~~~~~----~v~~~~~ 261 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNFR---RVLATEISKPSVAAAQYNIAANGID----NVQIIRM 261 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHHhCCC----cEEEEEC
Confidence 35799999999999999998864 599999999999999 999888864 5776653
No 106
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.85 E-value=8.1e-09 Score=75.59 Aligned_cols=57 Identities=19% Similarity=0.339 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 62 PVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
..+...+++.+. ..++.+|||+|||+|.++..+++.. .+++++|+|+.|++.| ++..
T Consensus 28 ~~~a~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~~ 85 (251)
T PRK10258 28 RQSADALLAMLP--QRKFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKDA 85 (251)
T ss_pred HHHHHHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCC
Confidence 334455555554 3457899999999999999888753 4699999999999999 7643
No 107
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.84 E-value=1.4e-08 Score=80.76 Aligned_cols=54 Identities=33% Similarity=0.474 Sum_probs=44.1
Q ss_pred HHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 66 AEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 66 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
..+++.+. +.++.+|||||||+|..+..+++.. +.+++|+|+|+.+++.| ++..
T Consensus 256 e~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~ 310 (475)
T PLN02336 256 KEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAI 310 (475)
T ss_pred HHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhh
Confidence 33444444 5678899999999999999999875 45799999999999999 7654
No 108
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.84 E-value=6.6e-08 Score=73.52 Aligned_cols=42 Identities=29% Similarity=0.370 Sum_probs=36.1
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
...+.+|||||||+|+++..++..+. ..|+|+|+|+.|+..+
T Consensus 120 ~l~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~ 161 (322)
T PRK15068 120 PLKGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQF 161 (322)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHH
Confidence 35678999999999999999998853 2599999999999765
No 109
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.84 E-value=5.1e-09 Score=80.47 Aligned_cols=66 Identities=33% Similarity=0.422 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEee
Q psy7827 63 VQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFIC 138 (140)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~ 138 (140)
.++..+++++. ..++ ++||+.||.|.+++++|..+.. |+|||+++++++.| +|+..++++ +++|++
T Consensus 184 ~l~~~~~~~l~--~~~~-~vlDlycG~G~fsl~la~~~~~---V~gvE~~~~av~~A~~Na~~N~i~----n~~f~~ 250 (352)
T PF05958_consen 184 KLYEQALEWLD--LSKG-DVLDLYCGVGTFSLPLAKKAKK---VIGVEIVEEAVEDARENAKLNGID----NVEFIR 250 (352)
T ss_dssp HHHHHHHHHCT--T-TT-EEEEES-TTTCCHHHHHCCSSE---EEEEES-HHHHHHHHHHHHHTT------SEEEEE
T ss_pred HHHHHHHHHhh--cCCC-cEEEEeecCCHHHHHHHhhCCe---EEEeeCCHHHHHHHHHHHHHcCCC----cceEEE
Confidence 34455555554 3334 8999999999999999988755 99999999999999 999999875 577664
No 110
>KOG0820|consensus
Probab=98.84 E-value=1.8e-08 Score=73.98 Aligned_cols=79 Identities=29% Similarity=0.401 Sum_probs=65.1
Q ss_pred cCCCCccc-chHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCC
Q psy7827 53 IGYGSIID-NPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKL 130 (140)
Q Consensus 53 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~ 130 (140)
...|+++. .+.+.+.+++... +++++.|||+|.|||.+|..|.+.+.+ |+++|+++.|+... ++......
T Consensus 34 kd~GQHilkNp~v~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~~kk---VvA~E~Dprmvael~krv~gtp~--- 105 (315)
T KOG0820|consen 34 KDFGQHILKNPLVIDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEAGKK---VVAVEIDPRMVAELEKRVQGTPK--- 105 (315)
T ss_pred cccchhhhcCHHHHHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHhcCe---EEEEecCcHHHHHHHHHhcCCCc---
Confidence 44666665 4778888888887 999999999999999999999999765 99999999999999 88765544
Q ss_pred CCcEEEeec
Q psy7827 131 NKRIKFICE 139 (140)
Q Consensus 131 ~~~i~~~~g 139 (140)
+.++++++|
T Consensus 106 ~~kLqV~~g 114 (315)
T KOG0820|consen 106 SGKLQVLHG 114 (315)
T ss_pred cceeeEEec
Confidence 456777665
No 111
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.83 E-value=1.9e-08 Score=77.08 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=47.9
Q ss_pred HHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCC
Q psy7827 66 AEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHY 127 (140)
Q Consensus 66 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~ 127 (140)
+.+++.+. .....+|||+|||+|.++..+++.. +..+++++|+|+.+++.| +++..+++
T Consensus 186 ~lLl~~l~--~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l 245 (342)
T PRK09489 186 QLLLSTLT--PHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGL 245 (342)
T ss_pred HHHHHhcc--ccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 34455554 2345689999999999999999985 556899999999999999 98888775
No 112
>PRK14968 putative methyltransferase; Provisional
Probab=98.83 E-value=2.5e-08 Score=69.50 Aligned_cols=56 Identities=32% Similarity=0.350 Sum_probs=46.2
Q ss_pred HHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCC
Q psy7827 67 EVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHY 127 (140)
Q Consensus 67 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~ 127 (140)
.+.+.+. ..++.+|||+|||+|.++..++.. ..+++|+|+|+++++.+ +++..++.
T Consensus 14 ~l~~~~~--~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~ 70 (188)
T PRK14968 14 LLAENAV--DKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNI 70 (188)
T ss_pred HHHHhhh--ccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCC
Confidence 3444444 467789999999999999999987 34699999999999999 88877665
No 113
>PRK04457 spermidine synthase; Provisional
Probab=98.83 E-value=4e-08 Score=72.68 Aligned_cols=59 Identities=19% Similarity=0.292 Sum_probs=48.0
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
.++.+|||||||+|.++..+++.. +..++++||+++++++.| +++...+. ..+++++++
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~---~~rv~v~~~ 124 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPEN---GERFEVIEA 124 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCC---CCceEEEEC
Confidence 456899999999999999999886 677899999999999999 87754332 246777654
No 114
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.82 E-value=2.5e-08 Score=78.42 Aligned_cols=63 Identities=17% Similarity=0.162 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCC
Q psy7827 63 VQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYP 128 (140)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~ 128 (140)
.....+...+. +.++.+|||+|||+|..+..+++..+ .++|+|+|+++.+++.+ +++++.++.
T Consensus 225 ~~s~~~~~~L~--~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~ 288 (426)
T TIGR00563 225 ASAQWVATWLA--PQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLT 288 (426)
T ss_pred HHHHHHHHHhC--CCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 33444555666 77889999999999999999999875 67899999999999999 999988763
No 115
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.82 E-value=1.7e-08 Score=78.36 Aligned_cols=55 Identities=35% Similarity=0.387 Sum_probs=45.7
Q ss_pred HHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 65 HAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 65 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
...+++.+. ++++.+|||||||+|.++..+++.. +.+|+|+|+|+++++.| +++.
T Consensus 156 ~~~l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~ 211 (383)
T PRK11705 156 LDLICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA 211 (383)
T ss_pred HHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc
Confidence 344455555 7789999999999999999999875 35799999999999999 8764
No 116
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.81 E-value=3.1e-08 Score=77.98 Aligned_cols=60 Identities=20% Similarity=0.233 Sum_probs=50.6
Q ss_pred HHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCC
Q psy7827 65 HAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHY 127 (140)
Q Consensus 65 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~ 127 (140)
...+...+. +.++.+|||+|||+|..+..+++..+ .++|+++|+++.+++.+ +++...++
T Consensus 233 s~~~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~ 293 (427)
T PRK10901 233 AQLAATLLA--PQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGL 293 (427)
T ss_pred HHHHHHHcC--CCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 334445555 67899999999999999999999873 37899999999999999 99988775
No 117
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.80 E-value=2.9e-08 Score=75.63 Aligned_cols=62 Identities=23% Similarity=0.256 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCC
Q psy7827 62 PVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYP 128 (140)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~ 128 (140)
+.+...++.... ++++++|||+|||+|.++..++... .+++|+|+++.|++.| .|+...++.
T Consensus 168 ~~la~~~~~l~~--~~~g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~ 230 (329)
T TIGR01177 168 PKLARAMVNLAR--VTEGDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIE 230 (329)
T ss_pred HHHHHHHHHHhC--CCCcCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 455566666665 7789999999999999988876653 4699999999999999 999887764
No 118
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.80 E-value=9.3e-08 Score=72.43 Aligned_cols=42 Identities=29% Similarity=0.391 Sum_probs=35.9
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
..++++|||+|||+|+++..++..+. ..|+|+|+|+.|+..+
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~ 160 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQF 160 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHH
Confidence 45788999999999999998887742 3699999999999765
No 119
>PRK06922 hypothetical protein; Provisional
Probab=98.80 E-value=3.3e-08 Score=80.63 Aligned_cols=49 Identities=14% Similarity=0.401 Sum_probs=42.5
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhc
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTL 125 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~ 125 (140)
..++.+|||+|||+|..+..+++.. ++++++|+|+|+.|++.| ++....
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~ 465 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNE 465 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhc
Confidence 4568899999999999999999886 678999999999999999 775543
No 120
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.79 E-value=2.4e-08 Score=75.70 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=47.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhc-CCCCCCCcEEEe
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTL-HYPKLNKRIKFI 137 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~-~~~~~~~~i~~~ 137 (140)
.+.++||||||+|.+...++... ..++++|+|+++.+++.| +++..+ ++ .++|+++
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l---~~~I~~~ 171 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGL---NGAIRLR 171 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCC---cCcEEEE
Confidence 45799999999999988888775 467899999999999999 999888 66 4567664
No 121
>KOG1540|consensus
Probab=98.79 E-value=4e-08 Score=71.63 Aligned_cols=73 Identities=18% Similarity=0.234 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCC-----CeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEe
Q psy7827 64 QHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKN-----GSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFI 137 (140)
Q Consensus 64 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~-----~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~ 137 (140)
|-+.....+. +..++++||++||||.++..+.+..... .+|+.+|++|+|+..+ ++..+.++.. ..++.|+
T Consensus 88 WKd~~v~~L~--p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~-~~~~~w~ 164 (296)
T KOG1540|consen 88 WKDMFVSKLG--PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKA-SSRVEWV 164 (296)
T ss_pred HHHHhhhccC--CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCc-CCceEEE
Confidence 4555666666 6788999999999999999999988542 7899999999999999 8876655531 2347776
Q ss_pred ec
Q psy7827 138 CE 139 (140)
Q Consensus 138 ~g 139 (140)
+|
T Consensus 165 ~~ 166 (296)
T KOG1540|consen 165 EG 166 (296)
T ss_pred eC
Confidence 64
No 122
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.78 E-value=7e-09 Score=74.52 Aligned_cols=56 Identities=25% Similarity=0.426 Sum_probs=45.4
Q ss_pred chHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hc
Q psy7827 61 NPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SN 121 (140)
Q Consensus 61 ~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~ 121 (140)
.|...+.++..+. ..+-.++||+|||||..+..+-..... ++|||+|+.|++.| ++
T Consensus 110 vP~~l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a~~---ltGvDiS~nMl~kA~eK 166 (287)
T COG4976 110 VPELLAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMADR---LTGVDISENMLAKAHEK 166 (287)
T ss_pred cHHHHHHHHHhcc--CCccceeeecccCcCcccHhHHHHHhh---ccCCchhHHHHHHHHhc
Confidence 3555566666555 555689999999999999999888755 99999999999999 54
No 123
>KOG3420|consensus
Probab=98.78 E-value=1.2e-08 Score=68.62 Aligned_cols=69 Identities=28% Similarity=0.408 Sum_probs=53.3
Q ss_pred CcccchHHHHHHHHHHhcc--cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCC
Q psy7827 57 SIIDNPVQHAEVLELLKDK--LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHY 127 (140)
Q Consensus 57 ~~~~~~~~~~~~~~~l~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~ 127 (140)
+....|.+...++..+..- --.|++++|+|||+|.++...+-. ....|+|+|++|++++.+ +|.....+
T Consensus 25 QY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~--~~e~vlGfDIdpeALEIf~rNaeEfEv 96 (185)
T KOG3420|consen 25 QYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMP--KNESVLGFDIDPEALEIFTRNAEEFEV 96 (185)
T ss_pred hCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcC--CCceEEeeecCHHHHHHHhhchHHhhh
Confidence 3445677788887777531 247899999999999999655543 344699999999999999 99887765
No 124
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.78 E-value=3e-08 Score=72.92 Aligned_cols=48 Identities=21% Similarity=0.212 Sum_probs=41.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCC
Q psy7827 79 GAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHY 127 (140)
Q Consensus 79 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~ 127 (140)
+.+|||+|||+|.++..+++.. +..+++|+|+|+.+++.| +|+..++.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~~ 135 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAGG 135 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 4589999999999999999885 445799999999999999 99877653
No 125
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=4.6e-08 Score=71.91 Aligned_cols=64 Identities=20% Similarity=0.325 Sum_probs=53.4
Q ss_pred CCCccc-chHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 55 YGSIID-NPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 55 ~~~~~~-~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
+||+.. .....+.+++.+. +.+++.|||||+|.|.+|..|++.... |++||+++.+++.. +.+.
T Consensus 8 ~GQnFL~d~~v~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~~---v~aiEiD~~l~~~L~~~~~ 73 (259)
T COG0030 8 LGQNFLIDKNVIDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAAR---VTAIEIDRRLAEVLKERFA 73 (259)
T ss_pred cccccccCHHHHHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcCe---EEEEEeCHHHHHHHHHhcc
Confidence 344332 4567788888887 778899999999999999999999765 99999999999999 7664
No 126
>KOG2915|consensus
Probab=98.77 E-value=4.8e-08 Score=71.75 Aligned_cols=76 Identities=24% Similarity=0.331 Sum_probs=66.7
Q ss_pred cccchHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEE
Q psy7827 58 IIDNPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKF 136 (140)
Q Consensus 58 ~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~ 136 (140)
.|..+.-.+.++..|+ +.+|.+|||-|+|+|.++.++++.+++.|+++..|+.+...+.| +.++..++ .+++++
T Consensus 87 QI~Yt~Dia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi---~~~vt~ 161 (314)
T KOG2915|consen 87 QILYTPDIAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI---GDNVTV 161 (314)
T ss_pred eEEecccHHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC---CcceEE
Confidence 3444444678888888 99999999999999999999999999999999999999999999 99999886 577877
Q ss_pred ee
Q psy7827 137 IC 138 (140)
Q Consensus 137 ~~ 138 (140)
.|
T Consensus 162 ~h 163 (314)
T KOG2915|consen 162 TH 163 (314)
T ss_pred EE
Confidence 65
No 127
>KOG2187|consensus
Probab=98.75 E-value=1.3e-08 Score=80.29 Aligned_cols=68 Identities=29% Similarity=0.372 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 63 VQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
.+...+-+++. ++.++.++|+.||||.+++.+++...+ |+|||++++.++.| .|...++++ +.+|++|
T Consensus 370 vLys~i~e~~~--l~~~k~llDv~CGTG~iglala~~~~~---ViGvEi~~~aV~dA~~nA~~Ngis----Na~Fi~g 438 (534)
T KOG2187|consen 370 VLYSTIGEWAG--LPADKTLLDVCCGTGTIGLALARGVKR---VIGVEISPDAVEDAEKNAQINGIS----NATFIVG 438 (534)
T ss_pred HHHHHHHHHhC--CCCCcEEEEEeecCCceehhhhccccc---eeeeecChhhcchhhhcchhcCcc----ceeeeec
Confidence 34445555665 778899999999999999999999876 99999999999999 999999985 6777776
No 128
>PTZ00146 fibrillarin; Provisional
Probab=98.74 E-value=3.4e-08 Score=73.80 Aligned_cols=44 Identities=32% Similarity=0.470 Sum_probs=39.3
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
++++++|||+|||+|.++..+++.+++.++|++||+++.|.+..
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dL 173 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDL 173 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHH
Confidence 68899999999999999999999998788999999999755444
No 129
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.74 E-value=3.4e-08 Score=69.36 Aligned_cols=44 Identities=34% Similarity=0.526 Sum_probs=39.0
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hc
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SN 121 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~ 121 (140)
++++++|||+|||.|.+..+|.+. ++.+.+|||++++.+..| ++
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r 55 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR 55 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc
Confidence 678999999999999999998886 466799999999999988 54
No 130
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.74 E-value=1.1e-09 Score=69.12 Aligned_cols=44 Identities=25% Similarity=0.493 Sum_probs=36.5
Q ss_pred EEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCC
Q psy7827 83 LDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHY 127 (140)
Q Consensus 83 LDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~ 127 (140)
||+|||+|.++..+++.. +..+++|+|+|+.|++.| +++.....
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~ 45 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGN 45 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT-
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC
Confidence 799999999999999996 677899999999999999 88877653
No 131
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.73 E-value=1.2e-07 Score=66.91 Aligned_cols=67 Identities=19% Similarity=0.187 Sum_probs=52.1
Q ss_pred HHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 67 EVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 67 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
.+...+.. ...+.++||++||+|.+++.++.++. .+|++||.++.+++.+ +|+..++. .++++++++
T Consensus 39 a~f~~l~~-~~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~---~~~~~~~~~ 106 (189)
T TIGR00095 39 LFFNILRP-EIQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKS---GEQAEVVRN 106 (189)
T ss_pred HHHHHHHH-hcCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCC---cccEEEEeh
Confidence 34444432 23688999999999999999998864 3699999999999999 99988876 345666653
No 132
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=3.9e-08 Score=73.35 Aligned_cols=60 Identities=28% Similarity=0.294 Sum_probs=50.9
Q ss_pred HHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCC
Q psy7827 66 AEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYP 128 (140)
Q Consensus 66 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~ 128 (140)
+.+++.+. ...+.+|||+|||.|.+++.+++.. +..+++-+|+|..+++.| +|+..++++
T Consensus 148 ~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~~ 208 (300)
T COG2813 148 RLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGVE 208 (300)
T ss_pred HHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCCC
Confidence 44555554 4445699999999999999999996 578899999999999999 999998875
No 133
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.72 E-value=1.1e-07 Score=67.79 Aligned_cols=58 Identities=29% Similarity=0.458 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 64 QHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 64 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
+...+++.+. ..++.+|||+|||+|..+..+++.....++++++|+++.+++.+ +++.
T Consensus 27 ~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~ 85 (223)
T TIGR01934 27 WRRRAVKLIG--VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE 85 (223)
T ss_pred HHHHHHHHhc--cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc
Confidence 3444555554 45788999999999999999999874336899999999999999 7764
No 134
>PLN03075 nicotianamine synthase; Provisional
Probab=98.70 E-value=1.5e-07 Score=70.54 Aligned_cols=60 Identities=25% Similarity=0.146 Sum_probs=45.7
Q ss_pred CCCCEEEEEcCCCChH-HHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhh-cCCCCCCCcEEEeec
Q psy7827 77 VPGAKVLDVGSGSGYL-TTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTT-LHYPKLNKRIKFICE 139 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~-~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~-~~~~~~~~~i~~~~g 139 (140)
.++++|+|||||.|-+ ++.++....++++++|+|+++++++.| +.+.. .++ ..+|+|..+
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL---~~rV~F~~~ 184 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL---SKRMFFHTA 184 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc---cCCcEEEEC
Confidence 3778999999996644 455555555788999999999999999 88754 555 456777653
No 135
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.70 E-value=4.4e-08 Score=69.06 Aligned_cols=46 Identities=24% Similarity=0.353 Sum_probs=37.4
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhc
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTL 125 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~ 125 (140)
..-.++||+|||.|.+|..|+.++.. ++++|+|+.+++.| +++...
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~---LlavDis~~Al~~Ar~Rl~~~ 88 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDR---LLAVDISPRALARARERLAGL 88 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEE---EEEEES-HHHHHHHHHHTTT-
T ss_pred cccceeEecCCCccHHHHHHHHhhCc---eEEEeCCHHHHHHHHHhcCCC
Confidence 34478999999999999999999855 99999999999999 888653
No 136
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.69 E-value=7.1e-08 Score=69.34 Aligned_cols=40 Identities=25% Similarity=0.179 Sum_probs=36.4
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
.++.+|||+|||.|..+.+||+++. +|+|||+|+.+++.+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~ 72 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQF 72 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHH
Confidence 5678999999999999999998754 499999999999987
No 137
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.68 E-value=4.7e-08 Score=60.34 Aligned_cols=42 Identities=26% Similarity=0.498 Sum_probs=34.9
Q ss_pred EEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcC
Q psy7827 83 LDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLH 126 (140)
Q Consensus 83 LDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~ 126 (140)
||+|||+|..+..+++. +..+++++|+++++++.+ ++....+
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~ 43 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEG 43 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTST
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccC
Confidence 79999999999999998 455799999999999999 7766554
No 138
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.65 E-value=6.3e-08 Score=66.66 Aligned_cols=54 Identities=31% Similarity=0.445 Sum_probs=46.0
Q ss_pred CEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 80 AKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 80 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
..|+|+.||.|..++.+|+.+.. |++||+++..++.| .|+.-.|+ .++|++++|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~---Viaidid~~~~~~a~hNa~vYGv---~~~I~~i~g 55 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDR---VIAIDIDPERLECAKHNAEVYGV---ADNIDFICG 55 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-E---EEEEES-HHHHHHHHHHHHHTT----GGGEEEEES
T ss_pred CEEEEeccCcCHHHHHHHHhCCe---EEEEECCHHHHHHHHHHHHHcCC---CCcEEEEeC
Confidence 36999999999999999999755 99999999999999 99999998 578999886
No 139
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.64 E-value=1e-07 Score=72.90 Aligned_cols=46 Identities=26% Similarity=0.385 Sum_probs=39.9
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
.++.+|||+|||+|.++..+++.. +..+++++|+|++|++.| ++..
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~ 158 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP 158 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhh
Confidence 467899999999999999998876 346899999999999999 7654
No 140
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.64 E-value=1.3e-07 Score=67.97 Aligned_cols=59 Identities=27% Similarity=0.515 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcc-cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 64 QHAEVLELLKDK-LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 64 ~~~~~~~~l~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
....+++.+... ...+.+|||+|||+|.++..+++.+ +..+++++|+++.+++.+ +++.
T Consensus 19 ~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~ 79 (240)
T TIGR02072 19 MAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS 79 (240)
T ss_pred HHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC
Confidence 444455555421 1345799999999999999999986 566799999999999999 7653
No 141
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.62 E-value=1.4e-07 Score=73.56 Aligned_cols=59 Identities=22% Similarity=0.206 Sum_probs=47.9
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
.++.+|||+|||+|.+++.++.. ...+|++||+|+.+++.| +|+..++++ ..+++++++
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl~--~~~v~~i~~ 278 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLD--LSKAEFVRD 278 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCC--CCcEEEEEc
Confidence 46789999999999998876643 234799999999999999 999998873 236777764
No 142
>KOG1499|consensus
Probab=98.62 E-value=9.9e-08 Score=72.24 Aligned_cols=59 Identities=29% Similarity=0.273 Sum_probs=49.1
Q ss_pred ccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 75 KLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 75 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
++.+++.|||+|||+|.++++-|+.+. .+|+|||.|.-+ +.| +.+..++++ +.|+++.|
T Consensus 57 ~lf~dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~ia-~~a~~iv~~N~~~---~ii~vi~g 116 (346)
T KOG1499|consen 57 HLFKDKTVLDVGCGTGILSMFAAKAGA--RKVYAVEASSIA-DFARKIVKDNGLE---DVITVIKG 116 (346)
T ss_pred hhcCCCEEEEcCCCccHHHHHHHHhCc--ceEEEEechHHH-HHHHHHHHhcCcc---ceEEEeec
Confidence 356899999999999999999999974 379999998865 888 888888884 45777665
No 143
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.62 E-value=1.6e-07 Score=63.55 Aligned_cols=40 Identities=35% Similarity=0.666 Sum_probs=34.9
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHH
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNH 118 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~ 118 (140)
..++.+|||+|||+|.++..+++.. . +++|+|+++.+++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~-~--~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRG-F--EVTGVDISPQMIEK 59 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTT-S--EEEEEESSHHHHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhC-C--EEEEEECCHHHHhh
Confidence 4678999999999999999997764 3 69999999999966
No 144
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.61 E-value=1.3e-07 Score=66.73 Aligned_cols=42 Identities=29% Similarity=0.388 Sum_probs=36.3
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
++++++|||+|||+|.++..+++.. ...++|+|+++++++.+
T Consensus 11 i~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a 52 (194)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLAC 52 (194)
T ss_pred cCCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHH
Confidence 4577899999999999999888764 33689999999999998
No 145
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.60 E-value=2.2e-07 Score=65.95 Aligned_cols=55 Identities=18% Similarity=0.306 Sum_probs=46.7
Q ss_pred CEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 80 AKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 80 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
..+||||||.|.++..+|... ++..++|||++...+..+ +++...++. ++.++++
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~----Nv~~~~~ 74 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLK----NVRFLRG 74 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTS----SEEEEES
T ss_pred CeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhccc----ceEEEEc
Confidence 389999999999999999996 788999999999999999 999888874 6777664
No 146
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.59 E-value=1.5e-07 Score=78.23 Aligned_cols=59 Identities=15% Similarity=0.092 Sum_probs=49.5
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
.++.+|||+|||+|.+++.++... ..+|++||+|+.+++.| +|+..++++ ..+++++++
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~G--a~~V~~vD~s~~al~~a~~N~~~ng~~--~~~v~~i~~ 596 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGG--AKSTTTVDMSNTYLEWAERNFALNGLS--GRQHRLIQA 596 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCC--ccceEEEEc
Confidence 457899999999999999999863 23699999999999999 999988873 246787764
No 147
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.59 E-value=1.6e-07 Score=67.72 Aligned_cols=41 Identities=27% Similarity=0.205 Sum_probs=36.7
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
+.++.+|||+|||.|..+.+||+.+. +|+|||+|+.+++.+
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~ 75 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQF 75 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHH
Confidence 45678999999999999999998754 499999999999987
No 148
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.58 E-value=2.3e-07 Score=73.80 Aligned_cols=49 Identities=31% Similarity=0.569 Sum_probs=40.9
Q ss_pred HHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 66 AEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 66 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
..+++.+. ..++.+|||+|||+|.++..+++... +++|+|+++.|++.+
T Consensus 27 ~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~~---~v~giD~s~~~l~~a 75 (475)
T PLN02336 27 PEILSLLP--PYEGKSVLELGAGIGRFTGELAKKAG---QVIALDFIESVIKKN 75 (475)
T ss_pred hHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhCC---EEEEEeCCHHHHHHH
Confidence 45555554 45678999999999999999998853 599999999999988
No 149
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.57 E-value=9.9e-08 Score=68.37 Aligned_cols=38 Identities=26% Similarity=0.605 Sum_probs=34.4
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCH
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIP 113 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~ 113 (140)
++++.+|||+|||+|.++..+++..++.++|+|||+++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~ 86 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP 86 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence 46788999999999999999999986677899999996
No 150
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.57 E-value=4.5e-07 Score=65.58 Aligned_cols=48 Identities=29% Similarity=0.421 Sum_probs=40.6
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcC
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLH 126 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~ 126 (140)
..++.+|||+|||+|.++..+++.. .+++++|+++.+++.+ +++...+
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~ 94 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESG 94 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcC
Confidence 4578899999999999999888764 3599999999999999 8776544
No 151
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.56 E-value=2.8e-07 Score=61.66 Aligned_cols=46 Identities=28% Similarity=0.407 Sum_probs=41.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCC
Q psy7827 81 KVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHY 127 (140)
Q Consensus 81 ~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~ 127 (140)
.+||+|||.|.++..+++.+ +.++++++|+++.+.+.+ +++..++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~ 47 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNL 47 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCC
Confidence 48999999999999999886 566899999999999999 88887765
No 152
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.55 E-value=1.1e-07 Score=66.82 Aligned_cols=40 Identities=33% Similarity=0.560 Sum_probs=35.7
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHH
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEI 115 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~ 115 (140)
+.++.+|||+|||+|.++..+++...+.++++++|+|+.+
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~ 69 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK 69 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc
Confidence 5788999999999999999999887666789999999965
No 153
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.54 E-value=3.9e-07 Score=64.88 Aligned_cols=60 Identities=28% Similarity=0.337 Sum_probs=46.4
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
+.++..|+|+.||.|.+++.+|+.. +...|+++|++|.+++.. +|+..+++ .++|..+++
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv---~~~i~~~~~ 159 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKV---ENRIEVING 159 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT----TTTEEEEES
T ss_pred CCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCC---CCeEEEEcC
Confidence 5789999999999999999999853 445799999999999999 99999988 466777654
No 154
>PHA03411 putative methyltransferase; Provisional
Probab=98.53 E-value=4.3e-07 Score=67.36 Aligned_cols=46 Identities=33% Similarity=0.409 Sum_probs=38.7
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hch
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNV 122 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~ 122 (140)
.....+|||+|||+|.++..++... ...+|+|+|+++.|++.| +++
T Consensus 62 ~~~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~ 108 (279)
T PHA03411 62 AHCTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL 108 (279)
T ss_pred cccCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC
Confidence 3456799999999999999888874 235799999999999999 764
No 155
>PHA03412 putative methyltransferase; Provisional
Probab=98.52 E-value=3.6e-07 Score=66.43 Aligned_cols=64 Identities=20% Similarity=0.168 Sum_probs=46.7
Q ss_pred CCcccchHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhC--CCCeEEEEcCCHHHHHHH-hchh
Q psy7827 56 GSIIDNPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVG--KNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 56 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
|+....+.+.+.+... ...+.+|||+|||+|.++..+++... +..+|++||+++.+++.| +++.
T Consensus 31 GqFfTP~~iAr~~~i~----~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~ 97 (241)
T PHA03412 31 GAFFTPIGLARDFTID----ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP 97 (241)
T ss_pred CccCCCHHHHHHHHHh----ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc
Confidence 3444444454544322 22467999999999999999988642 345899999999999999 8763
No 156
>PRK04148 hypothetical protein; Provisional
Probab=98.52 E-value=4e-07 Score=60.68 Aligned_cols=42 Identities=14% Similarity=0.153 Sum_probs=35.2
Q ss_pred CCCCEEEEEcCCCCh-HHHHHHHHhCCCCeEEEEcCCHHHHHHH-hc
Q psy7827 77 VPGAKVLDVGSGSGY-LTTCFAHMVGKNGSVVGVEHIPEIVNHA-SN 121 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~-~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~ 121 (140)
.++.+++|||||+|. ++..|++.+. .|+++|+++..++.+ ++
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~ 58 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKL 58 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHh
Confidence 356899999999996 8888887643 599999999999988 55
No 157
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.49 E-value=1.5e-06 Score=60.89 Aligned_cols=73 Identities=30% Similarity=0.345 Sum_probs=53.4
Q ss_pred chHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCC--------eEEEEcCCHHHHHHH-hchhhcCCCCCC
Q psy7827 61 NPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNG--------SVVGVEHIPEIVNHA-SNVTTLHYPKLN 131 (140)
Q Consensus 61 ~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~--------~v~gvD~s~~~i~~a-~~~~~~~~~~~~ 131 (140)
.+.+...++.+.. ++++..|||-.||+|.+.+..+.....-. +++|+|+++.+++.| +|+...++ .
T Consensus 13 ~~~lA~~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~---~ 87 (179)
T PF01170_consen 13 RPTLAAALLNLAG--WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV---E 87 (179)
T ss_dssp -HHHHHHHHHHTT----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT----C
T ss_pred CHHHHHHHHHHhC--CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc---C
Confidence 4667777777776 78889999999999999988877763322 288999999999999 99999887 3
Q ss_pred CcEEEee
Q psy7827 132 KRIKFIC 138 (140)
Q Consensus 132 ~~i~~~~ 138 (140)
+.|.+.+
T Consensus 88 ~~i~~~~ 94 (179)
T PF01170_consen 88 DYIDFIQ 94 (179)
T ss_dssp GGEEEEE
T ss_pred CceEEEe
Confidence 4566654
No 158
>PRK00811 spermidine synthase; Provisional
Probab=98.46 E-value=6.5e-07 Score=66.96 Aligned_cols=62 Identities=15% Similarity=0.136 Sum_probs=47.4
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCC-CCcEEEeec
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKL-NKRIKFICE 139 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~-~~~i~~~~g 139 (140)
+++.+||+||||+|..+..+++.. ...+|++||+++.+++.| +.+...+.... ..+++++.+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~ 138 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIG 138 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEEC
Confidence 467899999999999999998763 335799999999999999 88765432211 356777654
No 159
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.46 E-value=6.5e-07 Score=64.95 Aligned_cols=41 Identities=32% Similarity=0.353 Sum_probs=35.2
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
.++.++||+|||+|.++..+++.+ ..+|+|+|+++.|+...
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~g--a~~v~avD~~~~~l~~~ 114 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKG--AKEVYGVDVGYNQLAEK 114 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHH
Confidence 367799999999999999999984 34699999999888764
No 160
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.45 E-value=9.3e-07 Score=65.38 Aligned_cols=69 Identities=26% Similarity=0.443 Sum_probs=57.4
Q ss_pred cchHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEee
Q psy7827 60 DNPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFIC 138 (140)
Q Consensus 60 ~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~ 138 (140)
..+.+.+.+++.+. +.++..|||+|+|.|.+|..|++.+. +++++|+++.+.+.. +++.. ..++++++
T Consensus 14 ~~~~~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~~---~v~~vE~d~~~~~~L~~~~~~------~~~~~vi~ 82 (262)
T PF00398_consen 14 VDPNIADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRGK---RVIAVEIDPDLAKHLKERFAS------NPNVEVIN 82 (262)
T ss_dssp EHHHHHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHSS---EEEEEESSHHHHHHHHHHCTT------CSSEEEEE
T ss_pred CCHHHHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhcccC---cceeecCcHhHHHHHHHHhhh------cccceeee
Confidence 35778899999988 77899999999999999999999973 599999999999999 76651 34666665
Q ss_pred c
Q psy7827 139 E 139 (140)
Q Consensus 139 g 139 (140)
+
T Consensus 83 ~ 83 (262)
T PF00398_consen 83 G 83 (262)
T ss_dssp S
T ss_pred c
Confidence 3
No 161
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.45 E-value=1.3e-06 Score=58.83 Aligned_cols=50 Identities=32% Similarity=0.546 Sum_probs=42.5
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHh---CCCCeEEEEcCCHHHHHHH-hchhhcC
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMV---GKNGSVVGVEHIPEIVNHA-SNVTTLH 126 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~---~~~~~v~gvD~s~~~i~~a-~~~~~~~ 126 (140)
.+...|+|+|||.|+++..++..+ .++.+|+|||.++..++.+ ++..+.+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 567899999999999999999943 2456899999999999999 7776665
No 162
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.45 E-value=1.7e-06 Score=62.01 Aligned_cols=47 Identities=30% Similarity=0.430 Sum_probs=39.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCC
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHY 127 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~ 127 (140)
.+.+|||+|||+|.++..+++... +++++|+++.+++.+ +++...+.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~ 92 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPL 92 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCC
Confidence 478999999999999999887643 499999999999999 87766544
No 163
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.45 E-value=5.8e-07 Score=66.59 Aligned_cols=46 Identities=13% Similarity=0.239 Sum_probs=36.2
Q ss_pred CCCCEEEEEcCCCCh----HHHHHHHHhCC----CCeEEEEcCCHHHHHHH-hch
Q psy7827 77 VPGAKVLDVGSGSGY----LTTCFAHMVGK----NGSVVGVEHIPEIVNHA-SNV 122 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~----~~~~la~~~~~----~~~v~gvD~s~~~i~~a-~~~ 122 (140)
.++.+|||+|||+|. +++.+++.... +.+|+|+|+|+.|++.| +.+
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~ 152 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI 152 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence 345799999999996 56666666532 46899999999999999 654
No 164
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.40 E-value=2.1e-06 Score=64.35 Aligned_cols=62 Identities=27% Similarity=0.381 Sum_probs=43.3
Q ss_pred CCcccchHHHHHHHHHHhccc--CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 56 GSIIDNPVQHAEVLELLKDKL--VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 56 ~~~~~~~~~~~~~~~~l~~~~--~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
|-.|...+....-.+.+.+++ -.|++|||||||+|+.+..++..... .|+|+|+++...-+.
T Consensus 91 gi~IDtEWrSd~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~--~ViGiDP~~lf~~QF 154 (315)
T PF08003_consen 91 GIHIDTEWRSDWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAK--SVIGIDPSPLFYLQF 154 (315)
T ss_pred CEeecccccccchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCC--EEEEECCChHHHHHH
Confidence 334444433333333333322 47899999999999999999988643 699999999887664
No 165
>KOG1663|consensus
Probab=98.40 E-value=2.5e-06 Score=61.43 Aligned_cols=73 Identities=22% Similarity=0.318 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 62 PVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
+.....+...+. +..++++||||.=||+.++.+|....++|+|+++|++++..+.+ +..+.+++ ..+|++++|
T Consensus 59 ~d~g~fl~~li~--~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv---~~KI~~i~g 132 (237)
T KOG1663|consen 59 PDKGQFLQMLIR--LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV---DHKITFIEG 132 (237)
T ss_pred hHHHHHHHHHHH--HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc---cceeeeeec
Confidence 444444444555 66789999999999999999999999999999999999999999 98899998 578999887
No 166
>KOG3191|consensus
Probab=98.38 E-value=3.4e-06 Score=58.81 Aligned_cols=51 Identities=20% Similarity=0.339 Sum_probs=44.6
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCC
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHY 127 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~ 127 (140)
.....++|||||+|..+.+|++...+.....+.|++|.+++.. +.+..++.
T Consensus 42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~ 93 (209)
T KOG3191|consen 42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV 93 (209)
T ss_pred cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC
Confidence 3477899999999999999999988888899999999999998 76666654
No 167
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.36 E-value=2e-06 Score=62.11 Aligned_cols=53 Identities=36% Similarity=0.503 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 61 NPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 61 ~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
.|.+.+.+-. +. ..++.+||..|||.|....+|++.+. +|+|+|+|+.+++.+
T Consensus 23 ~p~L~~~~~~-l~--~~~~~rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~ 75 (218)
T PF05724_consen 23 NPALVEYLDS-LA--LKPGGRVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQA 75 (218)
T ss_dssp THHHHHHHHH-HT--TSTSEEEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHH
T ss_pred CHHHHHHHHh-cC--CCCCCeEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHH
Confidence 4444444333 44 66778999999999999999999853 599999999999998
No 168
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.35 E-value=1.7e-06 Score=62.72 Aligned_cols=54 Identities=22% Similarity=0.378 Sum_probs=47.8
Q ss_pred CEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEee
Q psy7827 80 AKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFIC 138 (140)
Q Consensus 80 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~ 138 (140)
..+||||||.|.+...+|+.- |+..++|||+....+..| +++.+.+++ +|.+++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~l~----Nlri~~ 104 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELGLK----NLRLLC 104 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcCCC----cEEEEc
Confidence 489999999999999999995 778899999999999999 999999884 466654
No 169
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.32 E-value=4.8e-06 Score=60.37 Aligned_cols=42 Identities=21% Similarity=0.092 Sum_probs=37.9
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-h
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-S 120 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~ 120 (140)
+.++.+||+.|||.|..+.+|+..+.. |+|+|+|+.+++.+ +
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~G~~---V~GvDlS~~Ai~~~~~ 83 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSKGVK---VIGIELSEKAVLSFFS 83 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhCCCc---EEEEecCHHHHHHHHH
Confidence 456789999999999999999998655 99999999999998 5
No 170
>KOG1500|consensus
Probab=98.31 E-value=2.3e-06 Score=65.01 Aligned_cols=57 Identities=33% Similarity=0.348 Sum_probs=47.3
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
..++.|||+|||+|.++.+.++.+.+ +|++||-|. |.+.| +.++.+++ .+||.++.|
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~--~vYAvEAS~-MAqyA~~Lv~~N~~---~~rItVI~G 233 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAK--KVYAVEASE-MAQYARKLVASNNL---ADRITVIPG 233 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcc--eEEEEehhH-HHHHHHHHHhcCCc---cceEEEccC
Confidence 46789999999999999999998754 799999774 88999 77666655 688888776
No 171
>KOG3010|consensus
Probab=98.30 E-value=1.5e-06 Score=63.00 Aligned_cols=43 Identities=21% Similarity=0.314 Sum_probs=36.8
Q ss_pred CCCC-EEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hch
Q psy7827 77 VPGA-KVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNV 122 (140)
Q Consensus 77 ~~~~-~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~ 122 (140)
..+. .++|+|||+|..++.++..+.. |+|+|+|+.|++.| +..
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~~k~---VIatD~s~~mL~~a~k~~ 75 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEHYKE---VIATDVSEAMLKVAKKHP 75 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHhhhh---heeecCCHHHHHHhhcCC
Confidence 3443 8999999999888888998766 99999999999999 654
No 172
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.29 E-value=5.9e-06 Score=62.29 Aligned_cols=71 Identities=23% Similarity=0.432 Sum_probs=59.6
Q ss_pred chHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 61 NPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 61 ~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
.|-+.+.+++.+. +.++..++|.-||.|.-|..+++..+ +++|+|+|.++.+++.| +++... .++++++++
T Consensus 5 ~pVll~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~-----~~R~~~i~~ 76 (305)
T TIGR00006 5 QSVLLDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDF-----EGRVVLIHD 76 (305)
T ss_pred cchhHHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhc-----CCcEEEEeC
Confidence 3557788888887 78889999999999999999999875 48999999999999999 877653 347887765
No 173
>PLN02366 spermidine synthase
Probab=98.27 E-value=8.5e-06 Score=61.68 Aligned_cols=62 Identities=18% Similarity=0.089 Sum_probs=48.1
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
+++.+||+||||.|..+..+++.. ...+|+.||+++.+++.| +.+...+...-..|++++.+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~ 152 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIG 152 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEC
Confidence 567899999999999999998762 345799999999999999 87765432111457888764
No 174
>KOG2899|consensus
Probab=98.26 E-value=2e-06 Score=62.44 Aligned_cols=54 Identities=26% Similarity=0.497 Sum_probs=44.6
Q ss_pred HHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhh
Q psy7827 70 ELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTT 124 (140)
Q Consensus 70 ~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~ 124 (140)
..+......+..+|||||.+|.+++.+++.+++ -.|+|+||++..|+.| ++++.
T Consensus 50 k~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 50 KVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred hhccccccCcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccc
Confidence 333433456789999999999999999999864 3599999999999999 88764
No 175
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.26 E-value=4.1e-06 Score=51.50 Aligned_cols=39 Identities=33% Similarity=0.517 Sum_probs=33.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hc
Q psy7827 81 KVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SN 121 (140)
Q Consensus 81 ~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~ 121 (140)
+++|+|||+|.++..++.. ...+++++|+++.+++.+ +.
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~ 40 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKA 40 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHH
Confidence 4899999999999999882 456899999999999988 54
No 176
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.25 E-value=8.2e-06 Score=63.49 Aligned_cols=62 Identities=24% Similarity=0.164 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcccC-CCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCC
Q psy7827 64 QHAEVLELLKDKLV-PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYP 128 (140)
Q Consensus 64 ~~~~~~~~l~~~~~-~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~ 128 (140)
+...+++.+. .. .+.+|||++||+|.+++.++...+ ..+|+++|+++.+++.+ +|++.++++
T Consensus 44 l~~~v~~~~~--~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~ 107 (382)
T PRK04338 44 ISVLVLRAFG--PKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLE 107 (382)
T ss_pred HHHHHHHHHH--hhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 3444444443 22 346899999999999999988764 34699999999999999 999888874
No 177
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.20 E-value=5.1e-06 Score=63.47 Aligned_cols=59 Identities=22% Similarity=0.250 Sum_probs=51.4
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
..+|.+|||.-||.|.+++.+|....+ +|+++|++|.+++.. +|+..++++ ++|+.++|
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v~---~~v~~i~g 245 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKVE---GRVEPILG 245 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcCcc---ceeeEEec
Confidence 456999999999999999999999644 499999999999999 999999984 55777665
No 178
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.18 E-value=9.4e-06 Score=60.28 Aligned_cols=61 Identities=13% Similarity=0.094 Sum_probs=44.8
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEee
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFIC 138 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~ 138 (140)
+.+.+||+||||+|.++..+++.. +..+++++|+++++++.| +++...+...-..+++++.
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~ 132 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQI 132 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEE
Confidence 456699999999999998888764 345799999999999999 8776543111133555543
No 179
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.18 E-value=1.6e-05 Score=63.40 Aligned_cols=53 Identities=23% Similarity=0.267 Sum_probs=49.7
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCC
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYP 128 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~ 128 (140)
+.++++|||++||.|.-|..++...+..+.|+++|+++..++.. +|+.+.|+.
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~ 164 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS 164 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 67899999999999999999999987778999999999999999 999999885
No 180
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.14 E-value=1.9e-05 Score=55.51 Aligned_cols=72 Identities=28% Similarity=0.307 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEee
Q psy7827 62 PVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFIC 138 (140)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~ 138 (140)
..+...+..++....-.+.++||+.||+|.+++..+.++.. +|+.||.++..+... +|++..+.. +++++++
T Consensus 26 drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~--~v~fVE~~~~a~~~i~~N~~~l~~~---~~~~v~~ 98 (183)
T PF03602_consen 26 DRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAK--SVVFVEKNRKAIKIIKKNLEKLGLE---DKIRVIK 98 (183)
T ss_dssp HHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-S--EEEEEES-HHHHHHHHHHHHHHT-G---GGEEEEE
T ss_pred HHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHHhCCC---cceeeec
Confidence 44566666777632137899999999999999987777643 699999999999999 999988873 3566554
No 181
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.14 E-value=6.8e-06 Score=61.96 Aligned_cols=68 Identities=25% Similarity=0.226 Sum_probs=49.1
Q ss_pred CcccchHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHh------CCCCeEEEEcCCHHHHHHH-hchhhcC
Q psy7827 57 SIIDNPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMV------GKNGSVVGVEHIPEIVNHA-SNVTTLH 126 (140)
Q Consensus 57 ~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~------~~~~~v~gvD~s~~~i~~a-~~~~~~~ 126 (140)
+..+...+...+.+++. ..++.+|+|-+||+|.+...+.+.. ....+++|+|+++.++..| .++...+
T Consensus 27 ~~~TP~~i~~l~~~~~~--~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~ 101 (311)
T PF02384_consen 27 QFYTPREIVDLMVKLLN--PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG 101 (311)
T ss_dssp GC---HHHHHHHHHHHT--T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT
T ss_pred eeehHHHHHHHHHhhhh--ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc
Confidence 33445567778888886 6778899999999999998888753 2456799999999999999 7765444
No 182
>KOG2730|consensus
Probab=98.13 E-value=7.5e-06 Score=58.74 Aligned_cols=56 Identities=29% Similarity=0.363 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
....|+|.-||.|..++.++..+.+ |++||++|.-+..| .|++-.|+. +||+|++|
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~---VisIdiDPikIa~AkhNaeiYGI~---~rItFI~G 150 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY---VIAIDIDPVKIACARHNAEVYGVP---DRITFICG 150 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe---EEEEeccHHHHHHHhccceeecCC---ceeEEEec
Confidence 5678999999999999999998766 99999999999999 999999994 59999997
No 183
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.10 E-value=2.2e-05 Score=62.25 Aligned_cols=58 Identities=28% Similarity=0.342 Sum_probs=44.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHh---CCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 79 GAKVLDVGSGSGYLTTCFAHMV---GKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 79 ~~~vLDiGcG~G~~~~~la~~~---~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
+..|+|+|||+|-++...++++ +...+|++||.++.++... +.+..++. .++|++++|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w---~~~V~vi~~ 248 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW---GDKVTVIHG 248 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT---TTTEEEEES
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC---CCeEEEEeC
Confidence 4689999999999998776654 2345799999999988877 66677776 578999886
No 184
>PRK01581 speE spermidine synthase; Validated
Probab=98.08 E-value=2.7e-05 Score=60.07 Aligned_cols=44 Identities=20% Similarity=0.172 Sum_probs=37.5
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-h
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-S 120 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~ 120 (140)
...+.+||++|||.|..+..+++.. +..+|++||+++++++.| +
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~ 192 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARN 192 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHh
Confidence 3566899999999999888888753 446799999999999999 6
No 185
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.08 E-value=1.7e-05 Score=54.74 Aligned_cols=63 Identities=19% Similarity=0.328 Sum_probs=53.9
Q ss_pred chHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhc
Q psy7827 61 NPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTL 125 (140)
Q Consensus 61 ~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~ 125 (140)
++...+.+...+. ...+.-|||+|.|+|-+|.+++...-++..++++|+|++..... +.....
T Consensus 33 Ss~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~ 96 (194)
T COG3963 33 SSILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGV 96 (194)
T ss_pred cHHHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCc
Confidence 4556777777777 77888999999999999999999887778899999999999998 776554
No 186
>PRK03612 spermidine synthase; Provisional
Probab=98.07 E-value=1.6e-05 Score=64.28 Aligned_cols=62 Identities=19% Similarity=0.263 Sum_probs=45.2
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hc--hhhcCCCCC-CCcEEEeec
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SN--VTTLHYPKL-NKRIKFICE 139 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~--~~~~~~~~~-~~~i~~~~g 139 (140)
+++++|||+|||+|..+..+++. +...++++||+++++++.| ++ +...+.... ..+++++++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~ 361 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVND 361 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEC
Confidence 56789999999999999998875 2225899999999999999 74 333221111 346777654
No 187
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.04 E-value=3e-05 Score=60.40 Aligned_cols=58 Identities=22% Similarity=0.206 Sum_probs=50.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
.|++|||+-|=||.++++.+..+.. +|++||.|...++.| +|+..+++. ..+++|+++
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~--~vt~VD~S~~al~~a~~N~~LNg~~--~~~~~~i~~ 275 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGAS--EVTSVDLSKRALEWARENAELNGLD--GDRHRFIVG 275 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCC--ceEEEeccHHHHHHHHHHHHhcCCC--ccceeeehh
Confidence 3999999999999999999887642 699999999999999 999999986 567777764
No 188
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.01 E-value=3e-05 Score=58.96 Aligned_cols=49 Identities=8% Similarity=0.187 Sum_probs=41.6
Q ss_pred ccCCCCEEEEEcCCCChHHHHHHHHhCC---CCeEEEEcCCHHHHHHH-hchh
Q psy7827 75 KLVPGAKVLDVGSGSGYLTTCFAHMVGK---NGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 75 ~~~~~~~vLDiGcG~G~~~~~la~~~~~---~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
.+.++..++|+|||+|.-+..|++...+ ..++++||+|.++++.+ +++.
T Consensus 73 ~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~ 125 (319)
T TIGR03439 73 SIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELP 125 (319)
T ss_pred hcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhh
Confidence 4667889999999999998888776632 35799999999999999 8887
No 189
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.01 E-value=1.9e-05 Score=54.92 Aligned_cols=49 Identities=22% Similarity=0.332 Sum_probs=38.1
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcC
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLH 126 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~ 126 (140)
..++.+|||+|||+|..++.++... ...+|+..|.++ .++.. .|+..++
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~ 92 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNG 92 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT-
T ss_pred hcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhcc
Confidence 5678899999999999999999984 345799999999 88888 8888776
No 190
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.00 E-value=4e-05 Score=64.02 Aligned_cols=74 Identities=23% Similarity=0.183 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhC----------------------------------------
Q psy7827 62 PVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVG---------------------------------------- 101 (140)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~---------------------------------------- 101 (140)
+.+.+.++.... +..++..++|-+||+|.+.+..+....
T Consensus 175 etlAaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~ 253 (702)
T PRK11783 175 ENLAAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA 253 (702)
T ss_pred HHHHHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 455555555443 225678999999999999988765311
Q ss_pred -CCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 102 -KNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 102 -~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
...+++|+|+++.+++.| +|+..+++ .++|+|.++
T Consensus 254 ~~~~~i~G~Did~~av~~A~~N~~~~g~---~~~i~~~~~ 290 (702)
T PRK11783 254 ELPSKFYGSDIDPRVIQAARKNARRAGV---AELITFEVK 290 (702)
T ss_pred ccCceEEEEECCHHHHHHHHHHHHHcCC---CcceEEEeC
Confidence 123699999999999999 99999988 356776543
No 191
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.98 E-value=4.1e-05 Score=54.75 Aligned_cols=56 Identities=30% Similarity=0.417 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hc
Q psy7827 63 VQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SN 121 (140)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~ 121 (140)
.....+++.+. +.+++.++|||||.|......+...+ -.+.+|||+.+...+.| ..
T Consensus 29 ~~~~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~ 85 (205)
T PF08123_consen 29 EFVSKILDELN--LTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEEL 85 (205)
T ss_dssp HHHHHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHH
Confidence 34566667776 88999999999999999988876653 23499999999999888 53
No 192
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.96 E-value=3e-05 Score=62.49 Aligned_cols=50 Identities=20% Similarity=0.153 Sum_probs=44.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCC
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYP 128 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~ 128 (140)
.+..+||||||.|.++..+|... ++..++|+|++...+..+ +++...++.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~ 397 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNIT 397 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCC
Confidence 45689999999999999999995 778899999999999999 888777764
No 193
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.94 E-value=5.3e-05 Score=56.99 Aligned_cols=56 Identities=21% Similarity=0.297 Sum_probs=39.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhc-CCCCCCCcEEEee
Q psy7827 79 GAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTL-HYPKLNKRIKFIC 138 (140)
Q Consensus 79 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~-~~~~~~~~i~~~~ 138 (140)
.-++||||||.-.+-..|+... .+++++|.|+++..++.| +++..+ ++ +++|+++.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L---~~~I~l~~ 160 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNL---ESRIELRK 160 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T----TTTEEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhcccc---ccceEEEE
Confidence 4579999999877655554443 378999999999999999 999988 76 67888864
No 194
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.93 E-value=3.5e-05 Score=58.94 Aligned_cols=44 Identities=27% Similarity=0.357 Sum_probs=34.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
++.+|||+|||-|....-+... .-..++|+|++...++.| ++..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~ 106 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYK 106 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHH
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHH
Confidence 7889999999999887777665 245799999999999999 8873
No 195
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.92 E-value=8.4e-05 Score=57.45 Aligned_cols=74 Identities=22% Similarity=0.236 Sum_probs=57.3
Q ss_pred chHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCC-------------------------------CC-----
Q psy7827 61 NPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGK-------------------------------NG----- 104 (140)
Q Consensus 61 ~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-------------------------------~~----- 104 (140)
.+.+...++.+.. ..++..++|--||+|.+.+-.|..... .+
T Consensus 176 ketLAaAil~lag--w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~ 253 (381)
T COG0116 176 KETLAAAILLLAG--WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKE 253 (381)
T ss_pred hHHHHHHHHHHcC--CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCc
Confidence 4555555655555 667789999999999999988776521 11
Q ss_pred --eEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 105 --SVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 105 --~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
.++|+|+++.+++.| .|...+|+ .+.|+|..+
T Consensus 254 ~~~~~G~Did~r~i~~Ak~NA~~AGv---~d~I~f~~~ 288 (381)
T COG0116 254 LPIIYGSDIDPRHIEGAKANARAAGV---GDLIEFKQA 288 (381)
T ss_pred cceEEEecCCHHHHHHHHHHHHhcCC---CceEEEEEc
Confidence 378999999999999 99999999 467888653
No 196
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.90 E-value=4.1e-05 Score=58.45 Aligned_cols=62 Identities=23% Similarity=0.245 Sum_probs=54.1
Q ss_pred chHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCC
Q psy7827 61 NPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHY 127 (140)
Q Consensus 61 ~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~ 127 (140)
.|...+.+..+.. +++|+.|||=-||||.+.+...-.+. +++|.|++..|++-| .|++..++
T Consensus 182 ~P~lAR~mVNLa~--v~~G~~vlDPFcGTGgiLiEagl~G~---~viG~Did~~mv~gak~Nl~~y~i 244 (347)
T COG1041 182 DPRLARAMVNLAR--VKRGELVLDPFCGTGGILIEAGLMGA---RVIGSDIDERMVRGAKINLEYYGI 244 (347)
T ss_pred CHHHHHHHHHHhc--cccCCEeecCcCCccHHHHhhhhcCc---eEeecchHHHHHhhhhhhhhhhCc
Confidence 4677778888877 89999999999999999988776643 599999999999999 99998875
No 197
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.89 E-value=0.00012 Score=54.88 Aligned_cols=58 Identities=24% Similarity=0.216 Sum_probs=46.6
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEee
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFIC 138 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~ 138 (140)
..+++|||+-|=||.++++.+..+. .+|++||.|..+++.| +|+..++++ .++++++.
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA--~~v~~VD~S~~al~~a~~N~~lNg~~--~~~~~~~~ 180 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGA--KEVVSVDSSKRALEWAKENAALNGLD--LDRHRFIQ 180 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTE--SEEEEEES-HHHHHHHHHHHHHTT-C--CTCEEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCC--ccceEEEe
Confidence 4688999999999999998776543 3699999999999999 999999875 46788775
No 198
>KOG4300|consensus
Probab=97.87 E-value=3.2e-05 Score=55.16 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=36.2
Q ss_pred CEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCC
Q psy7827 80 AKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHY 127 (140)
Q Consensus 80 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~ 127 (140)
..|||+|||||..-.+.--. +..+|+++|+++.|-+.+ +++.++..
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k~ 124 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKKP 124 (252)
T ss_pred cceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhccC
Confidence 35799999999986554322 455799999999999999 88877643
No 199
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.87 E-value=5.4e-05 Score=54.16 Aligned_cols=54 Identities=24% Similarity=0.375 Sum_probs=45.0
Q ss_pred EEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 82 VLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 82 vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
|+||||--|++..+|.+.. .-.+++++|+++..++.| +++...++ .++|+++.|
T Consensus 1 vaDIGtDHgyLpi~L~~~~-~~~~~ia~DI~~gpL~~A~~~i~~~~l---~~~i~~rlg 55 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG-KAPKAIAVDINPGPLEKAKENIAKYGL---EDRIEVRLG 55 (205)
T ss_dssp EEEET-STTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTT----TTTEEEEE-
T ss_pred CceeccchhHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcCC---cccEEEEEC
Confidence 6899999999999999985 445799999999999999 99999987 467887654
No 200
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.81 E-value=7.7e-05 Score=60.30 Aligned_cols=71 Identities=13% Similarity=0.182 Sum_probs=53.2
Q ss_pred CCcccchHHHHHHHHHHhcccC-----CCCEEEEEcCCCChHHHHHHHHhCC-------CCeEEEEcCCHHHHHHH-hch
Q psy7827 56 GSIIDNPVQHAEVLELLKDKLV-----PGAKVLDVGSGSGYLTTCFAHMVGK-------NGSVVGVEHIPEIVNHA-SNV 122 (140)
Q Consensus 56 ~~~~~~~~~~~~~~~~l~~~~~-----~~~~vLDiGcG~G~~~~~la~~~~~-------~~~v~gvD~s~~~i~~a-~~~ 122 (140)
|+..+.+.+...+++.+..... ...+|||.+||+|.+...++..... ...++|+|+++.+++.| .++
T Consensus 4 GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 4 GTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred cccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence 4455567778888877742111 3468999999999999999887631 24689999999999999 887
Q ss_pred hhcC
Q psy7827 123 TTLH 126 (140)
Q Consensus 123 ~~~~ 126 (140)
...+
T Consensus 84 ~~~~ 87 (524)
T TIGR02987 84 GEFA 87 (524)
T ss_pred hhcC
Confidence 6554
No 201
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.81 E-value=6.1e-05 Score=53.04 Aligned_cols=54 Identities=24% Similarity=0.352 Sum_probs=44.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 79 GAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 79 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
.+.+.|+|+|+|.++...++.... |++||.+|.....| +|+.-.+.. +++++.|
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~r---ViAiE~dPk~a~~a~eN~~v~g~~----n~evv~g 87 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAER---VIAIEKDPKRARLAEENLHVPGDV----NWEVVVG 87 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhce---EEEEecCcHHHHHhhhcCCCCCCc----ceEEEec
Confidence 478999999999999999988544 99999999999999 998666653 5666554
No 202
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.79 E-value=9e-05 Score=56.03 Aligned_cols=70 Identities=29% Similarity=0.483 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 62 PVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
|-+.+.+++.|. +.++..++|.--|.|.-|..+++..++ ++++|+|.++++++.| +++... .+++.++++
T Consensus 6 PVll~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~-----~~r~~~~~~ 76 (310)
T PF01795_consen 6 PVLLKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF-----DDRFIFIHG 76 (310)
T ss_dssp -TTHHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC-----CTTEEEEES
T ss_pred cccHHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc-----cceEEEEec
Confidence 456788888887 788999999999999999999999854 9999999999999999 887655 347887764
No 203
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.77 E-value=0.00034 Score=52.40 Aligned_cols=58 Identities=28% Similarity=0.402 Sum_probs=51.4
Q ss_pred HHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCC
Q psy7827 69 LELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYP 128 (140)
Q Consensus 69 ~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~ 128 (140)
...+. +.++.+|||++++.|.-+..+++.....+.+++.|+++..+... .++.+.|..
T Consensus 78 ~~~L~--~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~ 136 (283)
T PF01189_consen 78 ALALD--PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF 136 (283)
T ss_dssp HHHHT--TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S
T ss_pred ccccc--ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc
Confidence 34455 67899999999999999999999997789999999999999999 999999875
No 204
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.77 E-value=0.00024 Score=55.21 Aligned_cols=49 Identities=22% Similarity=0.209 Sum_probs=42.1
Q ss_pred CEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCC
Q psy7827 80 AKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYP 128 (140)
Q Consensus 80 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~ 128 (140)
-+|||+.||+|..++.++.....-.+|+++|+++.+++.+ +|++.+++.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~ 95 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE 95 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 5899999999999999998742224699999999999999 999888763
No 205
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.73 E-value=0.0003 Score=52.81 Aligned_cols=71 Identities=23% Similarity=0.388 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 62 PVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
|.+.+.+++.|. +.++...+|..-|.|..+..+++.++..++++|+|.++.+++.| +.+...+ +|+.++++
T Consensus 9 pVLl~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-----~r~~~v~~ 80 (314)
T COG0275 9 PVLLNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-----GRVTLVHG 80 (314)
T ss_pred chHHHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-----CcEEEEeC
Confidence 556788888888 88899999999999999999999997778899999999999999 8776654 47888775
No 206
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.72 E-value=0.00052 Score=48.30 Aligned_cols=71 Identities=24% Similarity=0.243 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEe
Q psy7827 62 PVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFI 137 (140)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~ 137 (140)
..+...+-.++.+.--.+.++||+-+|+|.+++-.+.++.. +++.||.+....... +|++..+. .++.+++
T Consensus 27 drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~--~~~~vE~~~~a~~~l~~N~~~l~~---~~~~~~~ 98 (187)
T COG0742 27 DRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAA--RVVFVEKDRKAVKILKENLKALGL---EGEARVL 98 (187)
T ss_pred hHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCc--eEEEEecCHHHHHHHHHHHHHhCC---ccceEEE
Confidence 34455566666521147899999999999999988877643 699999999999999 99988875 2445544
No 207
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.67 E-value=0.00084 Score=47.27 Aligned_cols=72 Identities=26% Similarity=0.262 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhc--ccCCCC-EEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEee
Q psy7827 63 VQHAEVLELLKD--KLVPGA-KVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFIC 138 (140)
Q Consensus 63 ~~~~~~~~~l~~--~~~~~~-~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~ 138 (140)
.+.+++++.+.. .+.... +++|||+|.|.-++.++=.. ++.+++.+|....-+... .-....+++ ++++++
T Consensus 30 ~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~----nv~v~~ 104 (184)
T PF02527_consen 30 IWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLS----NVEVIN 104 (184)
T ss_dssp HHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-S----SEEEEE
T ss_pred HHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCC----CEEEEE
Confidence 345566666642 233333 89999999999999999886 778899999999998888 767777774 466655
Q ss_pred c
Q psy7827 139 E 139 (140)
Q Consensus 139 g 139 (140)
+
T Consensus 105 ~ 105 (184)
T PF02527_consen 105 G 105 (184)
T ss_dssp S
T ss_pred e
Confidence 3
No 208
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.66 E-value=0.00022 Score=51.83 Aligned_cols=52 Identities=27% Similarity=0.430 Sum_probs=41.1
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
..+..+|+|||+|.|.++..+++.. |..+++..|. |..++.+ + .+||+++.|
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~----------~~rv~~~~g 150 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE----------ADRVEFVPG 150 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH----------TTTEEEEES
T ss_pred ccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc----------ccccccccc
Confidence 4566799999999999999999997 7889999999 7788888 5 246776654
No 209
>PLN02823 spermine synthase
Probab=97.60 E-value=0.00029 Score=54.00 Aligned_cols=62 Identities=19% Similarity=0.192 Sum_probs=46.5
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
+...+||.||+|.|..+..+++.. +..+++.||+++++++.| +.+...+-.+-..|++++.+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~ 164 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIIN 164 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEC
Confidence 456799999999999999888753 345799999999999999 87764321111457777653
No 210
>KOG2361|consensus
Probab=97.59 E-value=0.00019 Score=52.25 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=35.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC--CeEEEEcCCHHHHHHH-hch
Q psy7827 81 KVLDVGSGSGYLTTCFAHMVGKN--GSVVGVEHIPEIVNHA-SNV 122 (140)
Q Consensus 81 ~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~i~~a-~~~ 122 (140)
+|||+|||.|....++.+.. ++ -.+++.|.||.+++.. ++.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~-~n~~l~v~acDfsp~Ai~~vk~~~ 117 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTS-PNNRLKVYACDFSPRAIELVKKSS 117 (264)
T ss_pred hheeeccCCCcccchhhhcC-CCCCeEEEEcCCChHHHHHHHhcc
Confidence 79999999999999998875 44 6899999999999998 553
No 211
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.56 E-value=0.00059 Score=49.13 Aligned_cols=66 Identities=21% Similarity=0.204 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHhc--ccCC-CCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCC
Q psy7827 62 PVQHAEVLELLKD--KLVP-GAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYP 128 (140)
Q Consensus 62 ~~~~~~~~~~l~~--~~~~-~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~ 128 (140)
..+.+.+++.+.. .... +.+++|||+|.|.-++++|-. .++.+++-+|....-+... .-..+.+++
T Consensus 48 e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~-~p~~~vtLles~~Kk~~FL~~~~~eL~L~ 117 (215)
T COG0357 48 ELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIA-FPDLKVTLLESLGKKIAFLREVKKELGLE 117 (215)
T ss_pred HHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHh-ccCCcEEEEccCchHHHHHHHHHHHhCCC
Confidence 3455666665542 1223 689999999999999999954 4777899999998888777 656666664
No 212
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.52 E-value=0.00049 Score=49.10 Aligned_cols=62 Identities=21% Similarity=0.319 Sum_probs=46.1
Q ss_pred HHHHHhcccCCCC-EEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCC
Q psy7827 68 VLELLKDKLVPGA-KVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKL 130 (140)
Q Consensus 68 ~~~~l~~~~~~~~-~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~ 130 (140)
+++.|...+.... +|||||||||--+.++++.+ +.-+..-.|+++...... ..+...+..++
T Consensus 14 Il~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv 77 (204)
T PF06080_consen 14 ILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGLPNV 77 (204)
T ss_pred HHHHHHHHhCccCceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCCccc
Confidence 3344433344444 59999999999999999998 567788889999997777 66666666544
No 213
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.00083 Score=51.92 Aligned_cols=58 Identities=29% Similarity=0.418 Sum_probs=50.3
Q ss_pred HHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCC-eEEEEcCCHHHHHHH-hchhhcCCC
Q psy7827 69 LELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNG-SVVGVEHIPEIVNHA-SNVTTLHYP 128 (140)
Q Consensus 69 ~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~-~v~gvD~s~~~i~~a-~~~~~~~~~ 128 (140)
...+. +.+|.+|||++++.|.=|..+++.....+ .|+++|.++..++.. +|+++.|+.
T Consensus 149 a~~L~--p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~ 208 (355)
T COG0144 149 ALVLD--PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR 208 (355)
T ss_pred HHHcC--CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC
Confidence 34444 78999999999999999999999986534 459999999999999 999999986
No 214
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.49 E-value=0.00043 Score=51.62 Aligned_cols=45 Identities=24% Similarity=0.243 Sum_probs=37.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hch
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNV 122 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~ 122 (140)
.+.+|||+|||+|..+.++.+..+.-.+++++|.|+.|++.+ .-+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~ 78 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLL 78 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHH
Confidence 567999999999998888777765445799999999999988 543
No 215
>KOG4589|consensus
Probab=97.47 E-value=0.00022 Score=50.17 Aligned_cols=37 Identities=35% Similarity=0.569 Sum_probs=34.2
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCC
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHI 112 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s 112 (140)
+.++.+|||+||..|..+...-++.++.+.|.|||+-
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll 103 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL 103 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence 5789999999999999999999999999999999964
No 216
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.42 E-value=0.00052 Score=50.30 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=42.5
Q ss_pred HHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCC
Q psy7827 67 EVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHY 127 (140)
Q Consensus 67 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~ 127 (140)
.+.+.+-..+++..+|+|||||.==+++.+.... ++..++|+||+..+++.. ..+...++
T Consensus 94 ~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~ 154 (251)
T PF07091_consen 94 EFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGV 154 (251)
T ss_dssp HHHHHHCCCS---SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhcCCCCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCC
Confidence 3344443345668999999999999998887653 567899999999999999 77777765
No 217
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.42 E-value=0.00011 Score=51.09 Aligned_cols=37 Identities=32% Similarity=0.464 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHH
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPE 114 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~ 114 (140)
.+.++||+||++|.++..+++..++.++|+|+|+.+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 3489999999999999999999756678999999876
No 218
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.41 E-value=0.00045 Score=49.67 Aligned_cols=60 Identities=25% Similarity=0.375 Sum_probs=50.9
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
++.+.++.||||=.+++..++.+.. +...++++|+++..++.| +++++++. .++|++..|
T Consensus 14 V~~~~~iaDIGsDHAYLp~~Lv~~~-~~~~~va~eV~~gpl~~a~~~v~~~~l---~~~i~vr~~ 74 (226)
T COG2384 14 VKQGARIADIGSDHAYLPIYLVKNN-PASTAVAGEVVPGPLESAIRNVKKNNL---SERIDVRLG 74 (226)
T ss_pred HHcCCceeeccCchhHhHHHHHhcC-CcceEEEeecccCHHHHHHHHHHhcCC---cceEEEecc
Confidence 4566779999999999999999984 556799999999999999 99999887 467776543
No 219
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.40 E-value=0.00089 Score=48.33 Aligned_cols=45 Identities=33% Similarity=0.563 Sum_probs=37.5
Q ss_pred ccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 75 KLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 75 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
++++|.+||-+|.++|.....++..++++|.|++||.|+......
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL 114 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDL 114 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHH
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHH
Confidence 478999999999999999999999999899999999999554433
No 220
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.00064 Score=48.49 Aligned_cols=38 Identities=32% Similarity=0.628 Sum_probs=35.0
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCH
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIP 113 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~ 113 (140)
++++++|+|+|+..|..+..+++..+..+.|+|||+.|
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p 80 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP 80 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc
Confidence 57889999999999999999999998888899999876
No 221
>KOG1501|consensus
Probab=97.37 E-value=0.0004 Score=54.68 Aligned_cols=53 Identities=26% Similarity=0.351 Sum_probs=45.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEee
Q psy7827 81 KVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFIC 138 (140)
Q Consensus 81 ~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~ 138 (140)
.|||||+|||.++...++.++. .|+++|.=..|.+.| +-..+++. +++|.++.
T Consensus 69 ~vLdigtGTGLLSmMAvragaD--~vtA~EvfkPM~d~arkI~~kng~---SdkI~vIn 122 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGAD--SVTACEVFKPMVDLARKIMHKNGM---SDKINVIN 122 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCC--eEEeehhhchHHHHHHHHHhcCCC---ccceeeec
Confidence 5899999999999998888743 599999999999999 88888887 57787764
No 222
>PRK11524 putative methyltransferase; Provisional
Probab=97.36 E-value=0.00087 Score=50.16 Aligned_cols=46 Identities=22% Similarity=0.178 Sum_probs=39.9
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhh
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTT 124 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~ 124 (140)
-.+|+.|||--||+|..+.+..+... +.+|+|++++.++.| +++..
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~lgR---~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKASGR---KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHcCC---CEEEEeCCHHHHHHHHHHHHh
Confidence 47899999999999999988777654 499999999999999 88754
No 223
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.35 E-value=0.00026 Score=50.08 Aligned_cols=50 Identities=28% Similarity=0.355 Sum_probs=43.4
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCC
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYP 128 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~ 128 (140)
-.+++|||+|+|+|..++..++.+.. .+++.|+.|.....+ -|.+.++++
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~--~v~a~d~~P~~~~ai~lNa~angv~ 128 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAA--EVVAADIDPWLEQAIRLNAAANGVS 128 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhH--HHHhcCCChHHHHHhhcchhhccce
Confidence 47899999999999999999888743 699999998888888 888888873
No 224
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.34 E-value=0.00071 Score=49.87 Aligned_cols=39 Identities=26% Similarity=0.392 Sum_probs=35.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
...++||||+|.|..|..++..+.. |++.|.|+.|....
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~---v~aTE~S~~Mr~rL 132 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE---VYATEASPPMRWRL 132 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce---EEeecCCHHHHHHH
Confidence 4568999999999999999999866 99999999998877
No 225
>PHA01634 hypothetical protein
Probab=97.32 E-value=0.00064 Score=45.00 Aligned_cols=49 Identities=16% Similarity=0.074 Sum_probs=42.7
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCC
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHY 127 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~ 127 (140)
-.+++|+|||.+.|..+++++-++.+ +|+++|+++.+.+.. ++++.+++
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK--~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGAS--FVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCcc--EEEEeccCHHHHHHHHHHhhhhee
Confidence 36889999999999999999988755 799999999999999 88776643
No 226
>PRK10742 putative methyltransferase; Provisional
Probab=97.31 E-value=0.0012 Score=48.54 Aligned_cols=69 Identities=17% Similarity=0.180 Sum_probs=51.3
Q ss_pred HHHHHHHhcccCCCC--EEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCC-CC----CCCcEEEe
Q psy7827 66 AEVLELLKDKLVPGA--KVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHY-PK----LNKRIKFI 137 (140)
Q Consensus 66 ~~~~~~l~~~~~~~~--~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~-~~----~~~~i~~~ 137 (140)
..+++.+. ++++. +|||+.+|+|..++.++..+. +|+++|.++.+.... .++..... .. +..+++++
T Consensus 76 ~~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~G~---~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~ 150 (250)
T PRK10742 76 EAVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASVGC---RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLI 150 (250)
T ss_pred cHHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEE
Confidence 34455555 67777 899999999999999998854 499999999999888 87776411 11 12567777
Q ss_pred ec
Q psy7827 138 CE 139 (140)
Q Consensus 138 ~g 139 (140)
++
T Consensus 151 ~~ 152 (250)
T PRK10742 151 HA 152 (250)
T ss_pred eC
Confidence 64
No 227
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.27 E-value=0.0011 Score=47.19 Aligned_cols=51 Identities=24% Similarity=0.225 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 63 VQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
.+.+.++... ..+++.|||.-||+|..+.+..+... +.+|+|+++...+.|
T Consensus 179 ~l~~~lI~~~---t~~gdiVlDpF~GSGTT~~aa~~l~R---~~ig~E~~~~y~~~a 229 (231)
T PF01555_consen 179 ELIERLIKAS---TNPGDIVLDPFAGSGTTAVAAEELGR---RYIGIEIDEEYCEIA 229 (231)
T ss_dssp HHHHHHHHHH---S-TT-EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHH
T ss_pred HHHHHHHHhh---hccceeeehhhhccChHHHHHHHcCC---eEEEEeCCHHHHHHh
Confidence 3445555444 47899999999999999988777643 499999999999988
No 228
>KOG1975|consensus
Probab=97.23 E-value=0.00067 Score=51.50 Aligned_cols=46 Identities=24% Similarity=0.321 Sum_probs=38.9
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
.++++.++|+|||.|..++-+-++. -+.++|+||++..++.| ++..
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYr 161 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYR 161 (389)
T ss_pred hccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHH
Confidence 4788999999999999988877664 33699999999999999 7765
No 229
>PRK13699 putative methylase; Provisional
Probab=97.16 E-value=0.0017 Score=47.13 Aligned_cols=47 Identities=21% Similarity=0.251 Sum_probs=40.4
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhc
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTL 125 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~ 125 (140)
..+|+.|||--||+|..+.+..+... +.+|+|++++..+.| +++.+.
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~~r---~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQSGR---RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHcCC---CEEEEecCHHHHHHHHHHHHHH
Confidence 46899999999999999988777643 499999999999999 888654
No 230
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.13 E-value=0.00061 Score=52.22 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=30.4
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCH
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIP 113 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~ 113 (140)
+.+++++||+||++|.+|..+++... +|+|||..+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g~ 243 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM---FVTAVDNGP 243 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC---EEEEEechh
Confidence 36889999999999999999998853 699999665
No 231
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.06 E-value=0.00037 Score=44.19 Aligned_cols=53 Identities=28% Similarity=0.477 Sum_probs=13.1
Q ss_pred EEEcCCCChHHHHHHHHhCCCC--eEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 83 LDVGSGSGYLTTCFAHMVGKNG--SVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 83 LDiGcG~G~~~~~la~~~~~~~--~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
||+||..|..+..+++...+.. +++++|+.+. .+.+ +.+++.++ ..++++++|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~---~~~~~~~~g 56 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL---SDRVEFIQG 56 (106)
T ss_dssp --------------------------EEEESS-------------GGG----BTEEEEES
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC---CCeEEEEEc
Confidence 6999999999999998875544 7999999996 3334 44444444 456888776
No 232
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.04 E-value=0.0084 Score=45.04 Aligned_cols=59 Identities=14% Similarity=0.123 Sum_probs=48.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhCC-CCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVGK-NGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~~-~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
..-+||||.||.|...+-.....+. ...|.-.|.|+..++.. +.+++.++. +.++|.++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~---~i~~f~~~ 195 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE---DIARFEQG 195 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc---cceEEEec
Confidence 4569999999999998888777643 35799999999999999 999998884 34577654
No 233
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.04 E-value=0.00088 Score=48.13 Aligned_cols=47 Identities=23% Similarity=0.281 Sum_probs=35.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHhCC-CCeEEEEcCCHHHHHHH-hchhhc
Q psy7827 79 GAKVLDVGSGSGYLTTCFAHMVGK-NGSVVGVEHIPEIVNHA-SNVTTL 125 (140)
Q Consensus 79 ~~~vLDiGcG~G~~~~~la~~~~~-~~~v~gvD~s~~~i~~a-~~~~~~ 125 (140)
+-.++|-+||+|++...+.-.... -..|+|-|+++++++.| +|+.-.
T Consensus 52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LL 100 (246)
T PF11599_consen 52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLL 100 (246)
T ss_dssp -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCC
T ss_pred CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhc
Confidence 348999999999999887665422 23699999999999999 987543
No 234
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.79 E-value=0.0066 Score=44.63 Aligned_cols=62 Identities=23% Similarity=0.215 Sum_probs=45.4
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
++..+||-||-|.|..+..+.+.. +..+++.||+++..++.| +.+.......-..|++++.+
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~ 137 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIG 137 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEES
T ss_pred CCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEh
Confidence 568899999999999999988763 345799999999999999 87765432212457777653
No 235
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.77 E-value=0.0029 Score=40.55 Aligned_cols=47 Identities=21% Similarity=0.196 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcc--cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCH
Q psy7827 64 QHAEVLELLKDK--LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIP 113 (140)
Q Consensus 64 ~~~~~~~~l~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~ 113 (140)
+.+.++++.... ..+...++|||||+|.+.-.|...+-+ =+|+|.-.
T Consensus 42 IAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~---G~GiD~R~ 90 (112)
T PF07757_consen 42 IAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYP---GWGIDARR 90 (112)
T ss_pred HHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCC---cccccccc
Confidence 345555555431 124568999999999999988887644 57888543
No 236
>KOG3115|consensus
Probab=96.68 E-value=0.0014 Score=46.82 Aligned_cols=47 Identities=19% Similarity=0.315 Sum_probs=39.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcC
Q psy7827 79 GAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLH 126 (140)
Q Consensus 79 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~ 126 (140)
.-.+.|||||-|.+...|+..+ ++.-++|.||-...-++. .++.+..
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR 108 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALR 108 (249)
T ss_pred cceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHh
Confidence 3468999999999999999997 677799999988888888 7776554
No 237
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.53 E-value=0.0095 Score=48.02 Aligned_cols=71 Identities=20% Similarity=0.158 Sum_probs=57.3
Q ss_pred CCcccchHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCC---CCeEEEEcCCHHHHHHH-hchhhcCCC
Q psy7827 56 GSIIDNPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGK---NGSVVGVEHIPEIVNHA-SNVTTLHYP 128 (140)
Q Consensus 56 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~---~~~v~gvD~s~~~i~~a-~~~~~~~~~ 128 (140)
|.......+.+.+++.+. +.+..+|+|-.||+|.+....++.+.. ...++|.|+++.....| .|+--++++
T Consensus 166 GEfyTP~~v~~liv~~l~--~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~ 240 (489)
T COG0286 166 GEFYTPREVSELIVELLD--PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE 240 (489)
T ss_pred CccCChHHHHHHHHHHcC--CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 555566677788888887 567779999999999998888777643 35799999999999999 888777764
No 238
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.46 E-value=0.0075 Score=38.81 Aligned_cols=40 Identities=40% Similarity=0.698 Sum_probs=30.7
Q ss_pred EEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hch
Q psy7827 82 VLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNV 122 (140)
Q Consensus 82 vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~ 122 (140)
++|+|||+|..+ .+.........++|+|+++.++..+ ...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 92 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARA 92 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhh
Confidence 999999999987 4444432223699999999999987 544
No 239
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.41 E-value=0.0049 Score=44.91 Aligned_cols=41 Identities=29% Similarity=0.320 Sum_probs=34.1
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
.++..+||+|+.||.+|..+++.+.. +|+|||..-..+..-
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk--~VyavDVG~~Ql~~k 118 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAK--HVYAVDVGYGQLHWK 118 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCc--EEEEEEccCCccCHh
Confidence 57889999999999999999999644 799999877555443
No 240
>KOG4058|consensus
Probab=96.21 E-value=0.0092 Score=40.69 Aligned_cols=60 Identities=32% Similarity=0.351 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcC
Q psy7827 63 VQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLH 126 (140)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~ 126 (140)
..+..++.++. -.+..+.+|+|+|.|.+....++.+-. ..+|+|+++-.+.++ -..-..+
T Consensus 59 eQv~nVLSll~--~n~~GklvDlGSGDGRiVlaaar~g~~--~a~GvELNpwLVaysrl~a~R~g 119 (199)
T KOG4058|consen 59 EQVENVLSLLR--GNPKGKLVDLGSGDGRIVLAAARCGLR--PAVGVELNPWLVAYSRLHAWRAG 119 (199)
T ss_pred HHHHHHHHHcc--CCCCCcEEeccCCCceeehhhhhhCCC--cCCceeccHHHHHHHHHHHHHHh
Confidence 34455566664 345579999999999999988887522 389999999998887 4433333
No 241
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.17 E-value=0.029 Score=42.12 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=46.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEee
Q psy7827 79 GAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFIC 138 (140)
Q Consensus 79 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~ 138 (140)
.++||-||-|.|..+..+++.. +-.+++.||+++..++.| +.+..........|++++-
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i 136 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIII 136 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEe
Confidence 3699999999999999999985 456799999999999999 8887654211135666653
No 242
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=96.17 E-value=0.0048 Score=45.04 Aligned_cols=60 Identities=27% Similarity=0.307 Sum_probs=44.6
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEeec
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~g 139 (140)
++.+.+|||.+.|-|+.++..++++.. +|+.||.+|..++.| -|==..++ ....|+++.|
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~--~VitvEkdp~VLeLa~lNPwSr~l--~~~~i~iilG 192 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAI--HVITVEKDPNVLELAKLNPWSREL--FEIAIKIILG 192 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCc--EEEEEeeCCCeEEeeccCCCCccc--cccccEEecc
Confidence 567999999999999999998888642 699999999999998 44211112 1235666654
No 243
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.17 E-value=0.037 Score=41.23 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcccC-CCCEEEEEcCCCCh----HHHHHHHHhCC----CCeEEEEcCCHHHHHHH
Q psy7827 64 QHAEVLELLKDKLV-PGAKVLDVGSGSGY----LTTCFAHMVGK----NGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 64 ~~~~~~~~l~~~~~-~~~~vLDiGcG~G~----~~~~la~~~~~----~~~v~gvD~s~~~i~~a 119 (140)
..+.++..+..... ..-+||-.||+||- +++.+.+..+. ..+|+|.|+|..+++.|
T Consensus 81 l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A 145 (268)
T COG1352 81 LRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKA 145 (268)
T ss_pred HHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHH
Confidence 44555544421112 35689999999996 55666666642 56899999999999999
No 244
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.09 E-value=0.018 Score=41.18 Aligned_cols=55 Identities=31% Similarity=0.446 Sum_probs=44.1
Q ss_pred HHHHHHHHHh-cccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 64 QHAEVLELLK-DKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 64 ~~~~~~~~l~-~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
..+.++.-+. -.++++++||=+|+.+|.....++..++ +|.+++||.|+.+....
T Consensus 61 LaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reL 116 (231)
T COG1889 61 LAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMREL 116 (231)
T ss_pred HHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHH
Confidence 3444444443 2468999999999999999999999986 78999999999876555
No 245
>KOG1122|consensus
Probab=96.03 E-value=0.014 Score=45.91 Aligned_cols=54 Identities=20% Similarity=0.326 Sum_probs=50.3
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCC
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPK 129 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~ 129 (140)
++++.+|||.++..|.-|.++|...+..|.|++.|.+...+... .|+...|+++
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n 293 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN 293 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc
Confidence 67899999999999999999999998889999999999999999 9999999853
No 246
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.98 E-value=0.05 Score=40.71 Aligned_cols=58 Identities=28% Similarity=0.343 Sum_probs=35.0
Q ss_pred CCEEEEEcCC-CChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchh-hcCCCCCCCcEEEeec
Q psy7827 79 GAKVLDVGSG-SGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVT-TLHYPKLNKRIKFICE 139 (140)
Q Consensus 79 ~~~vLDiGcG-~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~-~~~~~~~~~~i~~~~g 139 (140)
+++|+=|||| -...++.+++....+..++++|+++++++.+ +-+. ..++ ..+++|+++
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L---~~~m~f~~~ 181 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL---SKRMSFITA 181 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH----SSEEEEES
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc---cCCeEEEec
Confidence 4599999999 4556677776655667899999999999999 6655 3343 456777653
No 247
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=95.97 E-value=0.019 Score=43.21 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=32.2
Q ss_pred CCEEEEEcCCCCh----HHHHHHHHhC---CCCeEEEEcCCHHHHHHH-hc
Q psy7827 79 GAKVLDVGSGSGY----LTTCFAHMVG---KNGSVVGVEHIPEIVNHA-SN 121 (140)
Q Consensus 79 ~~~vLDiGcG~G~----~~~~la~~~~---~~~~v~gvD~s~~~i~~a-~~ 121 (140)
.-+||..||+||- +++.+.+..+ .+.+|+|.|+|+.+++.| +-
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence 3699999999997 3444445432 145799999999999999 53
No 248
>KOG1227|consensus
Probab=95.93 E-value=0.0016 Score=48.98 Aligned_cols=48 Identities=23% Similarity=0.288 Sum_probs=40.4
Q ss_pred CCCEEEEEcCCCChHHH-HHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCC
Q psy7827 78 PGAKVLDVGSGSGYLTT-CFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHY 127 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~-~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~ 127 (140)
.+..|.|+.+|.|++++ .+.... ...|+++|.+|..++.. ++++.+++
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~ag--Ak~V~A~EwNp~svEaLrR~~~~N~V 243 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAG--AKTVFACEWNPWSVEALRRNAEANNV 243 (351)
T ss_pred ccchhhhhhcccceEEeehhhccC--ccEEEEEecCHHHHHHHHHHHHhcch
Confidence 45789999999999999 555553 34799999999999999 88888876
No 249
>KOG2651|consensus
Probab=95.92 E-value=0.037 Score=43.18 Aligned_cols=43 Identities=30% Similarity=0.397 Sum_probs=35.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHHhch
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNV 122 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a~~~ 122 (140)
.-+.++|+|.|.|+++..++-.++ -.|.+||-|....+.|+++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~--lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYG--LSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccC--ceEEEeccchHHHHHHHHH
Confidence 346899999999999999987764 4799999998888777433
No 250
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.88 E-value=0.027 Score=41.14 Aligned_cols=64 Identities=16% Similarity=0.160 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHhc----ccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhc
Q psy7827 61 NPVQHAEVLELLKD----KLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTL 125 (140)
Q Consensus 61 ~~~~~~~~~~~l~~----~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~ 125 (140)
....+..+.++|.. ..+++-++||||.|.-.+--.+-.. ..+++.+|.|+++..++.| ..+..+
T Consensus 57 RAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~-eYgwrfvGseid~~sl~sA~~ii~~N 125 (292)
T COG3129 57 RADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVH-EYGWRFVGSEIDSQSLSSAKAIISAN 125 (292)
T ss_pred hhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccce-eecceeecCccCHHHHHHHHHHHHcC
Confidence 44566677777753 1235568999998866554444332 2456899999999999999 887766
No 251
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.66 E-value=0.052 Score=38.87 Aligned_cols=58 Identities=22% Similarity=0.345 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHH---hCCCCeEEEEcCCHHHHHHHhchhhcCCCCCCCcEEEeec
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHM---VGKNGSVVGVEHIPEIVNHASNVTTLHYPKLNKRIKFICE 139 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~---~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~~~i~~~~g 139 (140)
+++.|+|+|.-.|..++++|.. .+..++|+|||++....... .++.... ..+|+++.|
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~-a~e~hp~---~~rI~~i~G 92 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK-AIESHPM---SPRITFIQG 92 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S--GGGG-------TTEEEEES
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH-HHhhccc---cCceEEEEC
Confidence 5679999999999999888754 34678999999975444332 1111111 357888776
No 252
>KOG2078|consensus
Probab=95.63 E-value=0.0095 Score=46.89 Aligned_cols=57 Identities=23% Similarity=0.225 Sum_probs=48.1
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEe
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFI 137 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~ 137 (140)
.++|..|.|+.||.|-+++.++... ++|++-|.++++++.. .+++.+.+. ..+|+++
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~---crV~aNDLNpesik~Lk~ni~lNkv~--~~~iei~ 304 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKG---CRVYANDLNPESIKWLKANIKLNKVD--PSAIEIF 304 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcC---cEEEecCCCHHHHHHHHHhccccccc--hhheeee
Confidence 5789999999999999999998875 4699999999999999 998887774 3346553
No 253
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=95.62 E-value=0.017 Score=41.13 Aligned_cols=42 Identities=12% Similarity=0.250 Sum_probs=28.6
Q ss_pred CCCEEEEEcCCCCh----HHHHHHHHhC----CCCeEEEEcCCHHHHHHH
Q psy7827 78 PGAKVLDVGSGSGY----LTTCFAHMVG----KNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 78 ~~~~vLDiGcG~G~----~~~~la~~~~----~~~~v~gvD~s~~~i~~a 119 (140)
+.-+||..||++|- +++.+.+... ...+|+|.|+|+.+++.|
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~A 80 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKA 80 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHH
Confidence 44589999999997 3444444221 135899999999999999
No 254
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.59 E-value=0.03 Score=40.85 Aligned_cols=60 Identities=28% Similarity=0.331 Sum_probs=35.9
Q ss_pred cCCC--CEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH----hchhhcCCCC---CCCcEEEeec
Q psy7827 76 LVPG--AKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA----SNVTTLHYPK---LNKRIKFICE 139 (140)
Q Consensus 76 ~~~~--~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a----~~~~~~~~~~---~~~~i~~~~g 139 (140)
++++ .+|||.-+|-|..++.++..+. +|+++|-||-+.... ++.... .+. ...||+++++
T Consensus 71 lk~~~~~~VLDaTaGLG~Da~vlA~~G~---~V~~lErspvia~Ll~dGL~r~~~~-~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 71 LKPGMRPSVLDATAGLGRDAFVLASLGC---KVTGLERSPVIAALLKDGLKRAQQD-PELLAEAMRRIQLIHG 139 (234)
T ss_dssp -BTTB---EEETT-TTSHHHHHHHHHT-----EEEEE--HHHHHHHHHHHHHHHHS-TTTHHHHHHHEEEEES
T ss_pred CCCCCCCEEEECCCcchHHHHHHHccCC---eEEEEECCHHHHHHHHHHHHHHHhC-cHhHHHHHhCCEEEcC
Confidence 4555 3899999999999999997643 599999999875444 333322 211 1357777764
No 255
>PRK00536 speE spermidine synthase; Provisional
Probab=95.55 E-value=0.042 Score=40.84 Aligned_cols=59 Identities=20% Similarity=-0.010 Sum_probs=45.8
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEe
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFI 137 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~ 137 (140)
.++.++||=||-|.|..+..+++.- .+|+-|||++++++.+ +.++...-.+-.-|++++
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~---~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~ 129 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYD---THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHA 129 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcC---CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEe
Confidence 3577999999999999999999873 2799999999999999 867653321114566664
No 256
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=95.53 E-value=0.091 Score=39.11 Aligned_cols=58 Identities=26% Similarity=0.301 Sum_probs=36.3
Q ss_pred HHHHHHHHhcccCCC-CEEEEEcCCCC--hHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhh
Q psy7827 65 HAEVLELLKDKLVPG-AKVLDVGSGSG--YLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTT 124 (140)
Q Consensus 65 ~~~~~~~l~~~~~~~-~~vLDiGcG~G--~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~ 124 (140)
..+....+. -..| ..+||||||-- ..+..+++...++++|+-||++|-.+..+ ..+..
T Consensus 56 l~RaVr~la--~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~ 117 (267)
T PF04672_consen 56 LRRAVRYLA--EEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLAD 117 (267)
T ss_dssp HHHHHHHHH--CTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT
T ss_pred HHHHHHHHH--HhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcC
Confidence 344445543 2214 58999999943 46677888888999999999999999888 55444
No 257
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.49 E-value=0.048 Score=40.04 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=36.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHhCCC-------CeEEEEcCCHHHHHHH-hchhh
Q psy7827 79 GAKVLDVGSGSGYLTTCFAHMVGKN-------GSVVGVEHIPEIVNHA-SNVTT 124 (140)
Q Consensus 79 ~~~vLDiGcG~G~~~~~la~~~~~~-------~~v~gvD~s~~~i~~a-~~~~~ 124 (140)
.-+|+|+|+|+|.++.-+++..... .+++-||+|+.+.+.- +++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 3589999999999999998877532 4799999999999888 77655
No 258
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=95.45 E-value=0.046 Score=36.77 Aligned_cols=38 Identities=32% Similarity=0.418 Sum_probs=25.5
Q ss_pred EEcCCCC--hHHHHHH-HHhCCCCeEEEEcCCHHHHHHH-hc
Q psy7827 84 DVGSGSG--YLTTCFA-HMVGKNGSVVGVEHIPEIVNHA-SN 121 (140)
Q Consensus 84 DiGcG~G--~~~~~la-~~~~~~~~v~gvD~s~~~i~~a-~~ 121 (140)
|||+..| ..+..+. +...+.++++++|++|...+.. ++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 6666554 3455778899999999999988 77
No 259
>KOG3987|consensus
Probab=95.38 E-value=0.0032 Score=45.20 Aligned_cols=39 Identities=23% Similarity=0.287 Sum_probs=35.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
.+.++||+|+|.|-++..++..+.. |++.|.|..|....
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fee---vyATElS~tMr~rL 150 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEE---VYATELSWTMRDRL 150 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHH---HHHHHhhHHHHHHH
Confidence 4579999999999999999998865 99999999999988
No 260
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=95.10 E-value=0.09 Score=41.12 Aligned_cols=59 Identities=22% Similarity=0.207 Sum_probs=45.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEee
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFIC 138 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~ 138 (140)
.+-++||.=+|+|.=++.++.......+|+.-|+|+++++.. +|++.+++. .+++++.+
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~--~~~~~v~~ 108 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLE--DERIEVSN 108 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-S--GCCEEEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcccc--CceEEEeh
Confidence 455899999999999999998864445799999999999999 999999885 23566654
No 261
>KOG2940|consensus
Probab=94.95 E-value=0.059 Score=39.51 Aligned_cols=43 Identities=7% Similarity=0.136 Sum_probs=35.3
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHHhc
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASN 121 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a~~ 121 (140)
+....++|||||.|++...+.... -.+++-+|.|-.|++.++.
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~ 113 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRD 113 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhc
Confidence 455689999999999999886653 2359999999999999933
No 262
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=94.86 E-value=0.026 Score=40.68 Aligned_cols=44 Identities=23% Similarity=0.301 Sum_probs=32.8
Q ss_pred CCCEEEEEcCCCChHHHHH-HHHhCCCCeEEEEcCCHHHHHHH-hchhh
Q psy7827 78 PGAKVLDVGSGSGYLTTCF-AHMVGKNGSVVGVEHIPEIVNHA-SNVTT 124 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~l-a~~~~~~~~v~gvD~s~~~i~~a-~~~~~ 124 (140)
...++||.|+|.|..|..+ +..+. +|--||+.+.+++.| +.+..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~---~VDlVEp~~~Fl~~a~~~l~~ 100 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFD---EVDLVEPVEKFLEQAKEYLGK 100 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-S---EEEEEES-HHHHHHHHHHTCC
T ss_pred CcceEEecccccchhHHHHHHHhcC---EeEEeccCHHHHHHHHHHhcc
Confidence 3468999999999999866 44443 599999999999999 76655
No 263
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=94.83 E-value=0.039 Score=44.34 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcccCCC--CEEEEEcCCCChHHHHHHHHhCCCCeEEEE-----cCCHHHHHHH-hc
Q psy7827 63 VQHAEVLELLKDKLVPG--AKVLDVGSGSGYLTTCFAHMVGKNGSVVGV-----EHIPEIVNHA-SN 121 (140)
Q Consensus 63 ~~~~~~~~~l~~~~~~~--~~vLDiGcG~G~~~~~la~~~~~~~~v~gv-----D~s~~~i~~a-~~ 121 (140)
..++.+.+.+......+ ..+||+|||+|.++.+|.++. |+.+ |..+..++.| ++
T Consensus 100 ~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~-----V~t~s~a~~d~~~~qvqfaleR 161 (506)
T PF03141_consen 100 HYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERN-----VTTMSFAPNDEHEAQVQFALER 161 (506)
T ss_pred HHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCC-----ceEEEcccccCCchhhhhhhhc
Confidence 44556666664101222 368999999999999998873 4444 4455667777 54
No 264
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.56 E-value=0.074 Score=39.66 Aligned_cols=42 Identities=17% Similarity=0.100 Sum_probs=35.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhh
Q psy7827 81 KVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTT 124 (140)
Q Consensus 81 ~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~ 124 (140)
+++|+.||.|.++..+...+.. .++++|+++.+++.. .|+..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~--~v~a~e~~~~a~~~~~~N~~~ 44 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFE--IVAANEIDKSAAETYEANFPN 44 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCE--EEEEEeCCHHHHHHHHHhCCC
Confidence 6899999999999998877422 589999999999999 87753
No 265
>KOG1596|consensus
Probab=94.51 E-value=0.028 Score=41.37 Aligned_cols=44 Identities=32% Similarity=0.490 Sum_probs=39.5
Q ss_pred ccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHH
Q psy7827 75 KLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNH 118 (140)
Q Consensus 75 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~ 118 (140)
+++++.+||=+|+++|.....++..+++++-|++||.|+-.=..
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRd 196 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRD 196 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHH
Confidence 67899999999999999999999999999999999998755433
No 266
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=94.46 E-value=0.12 Score=38.34 Aligned_cols=40 Identities=23% Similarity=0.387 Sum_probs=32.3
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhC----CCCeEEEEcCCHHH
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVG----KNGSVVGVEHIPEI 115 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~----~~~~v~gvD~s~~~ 115 (140)
+.++..++|+|||.|.++.++++... +...++.||.....
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R 59 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNR 59 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCccc
Confidence 46778999999999999999999873 23568999975533
No 267
>KOG1098|consensus
Probab=94.17 E-value=0.054 Score=44.68 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=34.2
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCH
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIP 113 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~ 113 (140)
+.++..|||+||..|......++.++.++-|+|||+-|
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 56888999999999999999999998888899999754
No 268
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=93.85 E-value=0.41 Score=37.17 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=38.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhC-------CCCeEEEEcCCHHHHHHH-hchhhcC
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVG-------KNGSVVGVEHIPEIVNHA-SNVTTLH 126 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~-------~~~~v~gvD~s~~~i~~a-~~~~~~~ 126 (140)
..-.++|+|.|.|.++.-+++... ...++.-||+|++..+.= ++++...
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~ 133 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE 133 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence 446899999999999988877551 245799999999998877 6666543
No 269
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=93.51 E-value=0.41 Score=35.55 Aligned_cols=49 Identities=12% Similarity=0.242 Sum_probs=39.3
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCC---CeEEEEcCCHHHHHHH-hchhh
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKN---GSVVGVEHIPEIVNHA-SNVTT 124 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~---~~v~gvD~s~~~i~~a-~~~~~ 124 (140)
+..+..++|+|+|+-.-+..|.+.+.+. .+.+.||+|...++.. +.+..
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~ 128 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILR 128 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHH
Confidence 4557899999999999999888877542 4799999999999877 55543
No 270
>KOG0024|consensus
Probab=93.45 E-value=0.27 Score=37.68 Aligned_cols=48 Identities=29% Similarity=0.415 Sum_probs=40.2
Q ss_pred cCCCCEEEEEcCC-CChHHHHHHHHhCCCCeEEEEcCCHHHHHHHhchhh
Q psy7827 76 LVPGAKVLDVGSG-SGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTT 124 (140)
Q Consensus 76 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a~~~~~ 124 (140)
++.+++||-+|+| .|..+...|+.++ -.+|+.+|+++..++.|+++..
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~~Ga 215 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKKFGA 215 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHHhCC
Confidence 6889999999999 5888888888875 3579999999999999922443
No 271
>KOG2920|consensus
Probab=92.83 E-value=0.099 Score=39.13 Aligned_cols=39 Identities=21% Similarity=0.199 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHH
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVN 117 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~ 117 (140)
..+++|||+|||.|...+....... ..+...|.+.+.++
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~--~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGA--VSVHFQDFNAEVLR 153 (282)
T ss_pred ecCceeEecCCcccccchhhhhhcc--ceeeeEecchhhee
Confidence 5789999999999999988877752 35888999988873
No 272
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=92.81 E-value=0.23 Score=35.81 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCH
Q psy7827 64 QHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIP 113 (140)
Q Consensus 64 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~ 113 (140)
-++.+++++.. .+++..|-|+|||.+.++..+... -+|...|+..
T Consensus 59 Pvd~iI~~l~~-~~~~~viaD~GCGdA~la~~~~~~----~~V~SfDLva 103 (219)
T PF05148_consen 59 PVDVIIEWLKK-RPKSLVIADFGCGDAKLAKAVPNK----HKVHSFDLVA 103 (219)
T ss_dssp HHHHHHHHHCT-S-TTS-EEEES-TT-HHHHH--S-------EEEEESS-
T ss_pred cHHHHHHHHHh-cCCCEEEEECCCchHHHHHhcccC----ceEEEeeccC
Confidence 46778888862 344579999999999998665432 2366666543
No 273
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=92.77 E-value=0.61 Score=34.64 Aligned_cols=47 Identities=30% Similarity=0.364 Sum_probs=40.5
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhc
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTL 125 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~ 125 (140)
..+++.|||--+|+|............ ++|+|+++..++.+ +++...
T Consensus 220 s~~~diVlDpf~GsGtt~~aa~~~~r~---~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIAAKNLGRR---FIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred CCCCCEEeecCCCCChHHHHHHHcCCc---eEEEecCHHHHHHHHHHHHhh
Confidence 578999999999999999887776544 99999999999999 887654
No 274
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=92.73 E-value=0.2 Score=35.86 Aligned_cols=39 Identities=38% Similarity=0.599 Sum_probs=35.3
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHH
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPE 114 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~ 114 (140)
++++++|+|+-.|.|++|..++..+++.|.|+++-..+.
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~ 84 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAEL 84 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhh
Confidence 789999999999999999999999999999999866554
No 275
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=92.69 E-value=0.36 Score=36.06 Aligned_cols=39 Identities=28% Similarity=0.201 Sum_probs=33.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
...+||--|||.|.++.-+|.++- .+.|.|.|--|+-..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~---~~~gnE~S~~Mll~s 94 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY---AVQGNEFSYFMLLAS 94 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc---eEEEEEchHHHHHHH
Confidence 346899999999999999999854 499999999997544
No 276
>KOG2360|consensus
Probab=92.62 E-value=0.19 Score=39.20 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=47.8
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCC
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPK 129 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~ 129 (140)
..+++.|+|..|..|.-|..++......++++|.|.++...+.- +-+...|.+.
T Consensus 211 p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~ 265 (413)
T KOG2360|consen 211 PRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSI 265 (413)
T ss_pred CCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCc
Confidence 56789999999999999999999887788999999999999888 7777777654
No 277
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=92.59 E-value=0.24 Score=37.04 Aligned_cols=41 Identities=27% Similarity=0.246 Sum_probs=34.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 81 KVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 81 ~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
+++|+-||.|.++..+.+.+.. .+.++|+++.+.+.- .|+.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~--~~~a~e~~~~a~~~y~~N~~ 43 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFE--VVWAVEIDPDACETYKANFP 43 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEE--EEEEEESSHHHHHHHHHHHT
T ss_pred cEEEEccCccHHHHHHHhcCcE--EEEEeecCHHHHHhhhhccc
Confidence 7899999999999999888622 499999999999988 7775
No 278
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=92.15 E-value=1.1 Score=27.05 Aligned_cols=49 Identities=29% Similarity=0.461 Sum_probs=27.6
Q ss_pred HHHHHHHHhc--ccCCCCEEEEEcCCCCh-HHHHHHHHhCCCCeEEEEcCCH
Q psy7827 65 HAEVLELLKD--KLVPGAKVLDVGSGSGY-LTTCFAHMVGKNGSVVGVEHIP 113 (140)
Q Consensus 65 ~~~~~~~l~~--~~~~~~~vLDiGcG~G~-~~~~la~~~~~~~~v~gvD~s~ 113 (140)
+...++.... .+..+++||-+||.+|+ ++..++..++.++..+||-...
T Consensus 23 V~~qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fEk 74 (78)
T PF12242_consen 23 VENQIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFEK 74 (78)
T ss_dssp HHHHHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE---
T ss_pred HHHHHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeecc
Confidence 3344444432 23345899999999999 4456777777778888886544
No 279
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=91.61 E-value=0.58 Score=36.69 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=35.1
Q ss_pred HHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 69 LELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 69 ~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
.+.|. +.++++||-|.+|......+++.. ..+|++||+||..+...
T Consensus 28 ~~aL~--i~~~d~vl~ItSaG~N~L~yL~~~---P~~I~aVDlNp~Q~aLl 73 (380)
T PF11899_consen 28 MEALN--IGPDDRVLTITSAGCNALDYLLAG---PKRIHAVDLNPAQNALL 73 (380)
T ss_pred HHHhC--CCCCCeEEEEccCCchHHHHHhcC---CceEEEEeCCHHHHHHH
Confidence 45666 889999999997766665554443 34699999999987666
No 280
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=91.34 E-value=1 Score=35.34 Aligned_cols=61 Identities=16% Similarity=0.217 Sum_probs=44.1
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchh--hcCC-CCCCCcEEEee
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVT--TLHY-PKLNKRIKFIC 138 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~--~~~~-~~~~~~i~~~~ 138 (140)
+...++|-+|-|.|.-...+.+.- .-.+|+-||.+|.|++.+ ++.. +.|- .+-.-|++++.
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP-~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~ 352 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYP-QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVN 352 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCC-CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEe
Confidence 455789999999999998888763 356899999999999999 5532 2221 11145677654
No 281
>KOG2912|consensus
Probab=90.79 E-value=0.66 Score=35.69 Aligned_cols=53 Identities=23% Similarity=0.214 Sum_probs=38.9
Q ss_pred EEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEee
Q psy7827 82 VLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFIC 138 (140)
Q Consensus 82 vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~ 138 (140)
=+|||+|.-.+-..+... ..+...+++|+++-..+.| +|+.+++. .++|.+++
T Consensus 106 GiDIgtgasci~~llg~r-q~n~~f~~teidd~s~~~a~snV~qn~l---ss~ikvV~ 159 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGAR-QNNWYFLATEIDDMSFNYAKSNVEQNNL---SSLIKVVK 159 (419)
T ss_pred eeeccCchhhhHHhhhch-hccceeeeeeccccccchhhcccccccc---ccceeeEE
Confidence 378887765554444333 2457799999999999999 99999988 46677665
No 282
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=90.50 E-value=0.82 Score=35.46 Aligned_cols=45 Identities=29% Similarity=0.553 Sum_probs=37.2
Q ss_pred cCCCCEEEEEcCCC-ChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hc
Q psy7827 76 LVPGAKVLDVGSGS-GYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SN 121 (140)
Q Consensus 76 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~ 121 (140)
+.++.+||.+|||. |..+..+++..+. .+++++|.+++..+.+ +.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~-~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGA-ERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHc
Confidence 66788999999987 8888888888642 3599999999999888 54
No 283
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=90.15 E-value=1.9 Score=33.66 Aligned_cols=46 Identities=28% Similarity=0.221 Sum_probs=41.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhc
Q psy7827 79 GAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTL 125 (140)
Q Consensus 79 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~ 125 (140)
..+|+|.=||+|.=++.++...+.. +++.-|+||.+++.+ +|+..+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N 99 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLN 99 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhc
Confidence 6799999999999999998886443 799999999999999 998887
No 284
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=89.57 E-value=1.6 Score=33.59 Aligned_cols=45 Identities=33% Similarity=0.550 Sum_probs=36.7
Q ss_pred CCCCEEEEEcCC-CChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hch
Q psy7827 77 VPGAKVLDVGSG-SGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNV 122 (140)
Q Consensus 77 ~~~~~vLDiGcG-~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~ 122 (140)
.++.+|+=+||| .|.++..+++..+ ..+|+.+|.+++.++.| +..
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~ 213 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAG 213 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhC
Confidence 445599999999 5888888888764 46799999999999999 644
No 285
>KOG0821|consensus
Probab=89.45 E-value=1.1 Score=32.76 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=33.6
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
.-.+..|++||.|.|.++..+..+.- .++..||+++.++.-.
T Consensus 48 ~~~~~~v~eIgPgpggitR~il~a~~--~RL~vVE~D~RFip~L 89 (326)
T KOG0821|consen 48 NLTNAYVYEIGPGPGGITRSILNADV--ARLLVVEKDTRFIPGL 89 (326)
T ss_pred ccccceeEEecCCCCchhHHHHhcch--hheeeeeeccccChHH
Confidence 34567899999999999999988753 3688888888777655
No 286
>KOG1269|consensus
Probab=89.18 E-value=0.57 Score=36.52 Aligned_cols=56 Identities=29% Similarity=0.371 Sum_probs=43.7
Q ss_pred HHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCC
Q psy7827 70 ELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHY 127 (140)
Q Consensus 70 ~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~ 127 (140)
..+...+.++..++|+|||.|..+..++... ...++|++.++..+..+ .......+
T Consensus 102 ~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l 158 (364)
T KOG1269|consen 102 VALRESCFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYL 158 (364)
T ss_pred HHHhhcCcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHh
Confidence 3333346788899999999999999998874 44699999999999888 65555444
No 287
>KOG2198|consensus
Probab=88.97 E-value=1.2 Score=34.66 Aligned_cols=50 Identities=30% Similarity=0.394 Sum_probs=41.5
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCC---CCeEEEEcCCHHHHHHH-hchhhc
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGK---NGSVVGVEHIPEIVNHA-SNVTTL 125 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~---~~~v~gvD~s~~~i~~a-~~~~~~ 125 (140)
++++++|||+++..|.-|..+.+...+ .+.|++-|.++..+... .-+...
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l 206 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL 206 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc
Confidence 789999999999999999999888743 34799999999998888 554443
No 288
>KOG1709|consensus
Probab=88.85 E-value=3.7 Score=30.01 Aligned_cols=41 Identities=24% Similarity=0.412 Sum_probs=34.2
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
.+|.+||++|-|-|.....+.++- + .+=+-||..|+.++.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~-p-~~H~IiE~hp~V~krm 140 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAP-P-DEHWIIEAHPDVLKRM 140 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcC-C-cceEEEecCHHHHHHH
Confidence 688999999999999999988873 3 3456689999988777
No 289
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=88.78 E-value=1.5 Score=33.93 Aligned_cols=42 Identities=29% Similarity=0.477 Sum_probs=35.0
Q ss_pred cCCCCEEEEEcCC-CChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSG-SGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
++++++|+=+|+| .|..++.+|+..+ ++|+++|.+++-.+.|
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a 206 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELA 206 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHH
Confidence 7899999999998 4556677777653 6899999999999888
No 290
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=88.78 E-value=0.61 Score=29.57 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=27.6
Q ss_pred CCCChHHHHHHHHhCCCC-eEEEEcCCHHHHHHH
Q psy7827 87 SGSGYLTTCFAHMVGKNG-SVVGVEHIPEIVNHA 119 (140)
Q Consensus 87 cG~G~~~~~la~~~~~~~-~v~gvD~s~~~i~~a 119 (140)
||.|.++..+++.+...+ .++.+|.+++.++.+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~ 37 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEEL 37 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHH
Confidence 788899999988876555 799999999998888
No 291
>KOG3178|consensus
Probab=88.71 E-value=0.79 Score=35.37 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=37.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCC
Q psy7827 79 GAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHY 127 (140)
Q Consensus 79 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~ 127 (140)
-...+|+|.|.|..+..+...++. |-+++++.+.+..+ ..+. .++
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~---ik~infdlp~v~~~a~~~~-~gV 223 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH---IKGINFDLPFVLAAAPYLA-PGV 223 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC---CceeecCHHHHHhhhhhhc-CCc
Confidence 378999999999999999887644 99999999999888 7774 444
No 292
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=88.42 E-value=1.2 Score=31.22 Aligned_cols=51 Identities=20% Similarity=0.345 Sum_probs=41.6
Q ss_pred ccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcC
Q psy7827 75 KLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLH 126 (140)
Q Consensus 75 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~ 126 (140)
+.+.+...+|+|+..|.+.-..++.. ..++++++++-.+|-... .+...++
T Consensus 76 hckhdttyidiganvgtfcgiaarhi-tqgkiiaiepltemensirmnvqlnn 127 (286)
T PF05575_consen 76 HCKHDTTYIDIGANVGTFCGIAARHI-TQGKIIAIEPLTEMENSIRMNVQLNN 127 (286)
T ss_pred hccCCceEEEeccccccchhhhhhhc-ccCceEEEechhhhhhheeeeeeeCC
Confidence 34567789999999999988888876 568899999999998887 7765544
No 293
>KOG2782|consensus
Probab=88.20 E-value=0.59 Score=34.09 Aligned_cols=55 Identities=25% Similarity=0.295 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 62 PVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
|.+...+++.+. +.++...+|..-|.|.-+..+.+.. ++.++++.|.+|-+.+.|
T Consensus 29 PVm~devl~~ls--pv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La 83 (303)
T KOG2782|consen 29 PVMLDEVLDILS--PVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLA 83 (303)
T ss_pred ceehhhHHHHcC--CCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHH
Confidence 556788888888 7889999999999999999999996 678899999999888877
No 294
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=88.12 E-value=7.8 Score=28.57 Aligned_cols=65 Identities=9% Similarity=0.077 Sum_probs=37.6
Q ss_pred chHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCC
Q psy7827 61 NPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHY 127 (140)
Q Consensus 61 ~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~ 127 (140)
.....+++.-.+...--.|++||-+|=. =..|++++-. +...+|+.+|+++.+++.. +..++.++
T Consensus 27 ~eT~~~Ra~~~~~~gdL~gk~il~lGDD-DLtSlA~al~-~~~~~I~VvDiDeRll~fI~~~a~~~gl 92 (243)
T PF01861_consen 27 PETTLRRAALMAERGDLEGKRILFLGDD-DLTSLALALT-GLPKRITVVDIDERLLDFINRVAEEEGL 92 (243)
T ss_dssp HHHHHHHHHHHHHTT-STT-EEEEES-T-T-HHHHHHHH-T--SEEEEE-S-HHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHhcCcccCCEEEEEcCC-cHHHHHHHhh-CCCCeEEEEEcCHHHHHHHHHHHHHcCC
Confidence 3444555544444222468899999832 2334444443 3556899999999999999 88888776
No 295
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=87.69 E-value=2.7 Score=30.15 Aligned_cols=43 Identities=28% Similarity=0.361 Sum_probs=33.7
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHh---CCCCeEEEEcCCHHHHHHH
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMV---GKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~---~~~~~v~gvD~s~~~i~~a 119 (140)
.+++.|+|+|+-.|..+++.|... +...+|+++|++-.-++.+
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~ 113 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPA 113 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChh
Confidence 467899999999999998887643 4446899999987665555
No 296
>KOG1331|consensus
Probab=87.37 E-value=0.47 Score=35.69 Aligned_cols=39 Identities=23% Similarity=0.329 Sum_probs=31.5
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
...+..++|+|||.|-.+.. .+...++|.|++...+..|
T Consensus 43 ~~~gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~~l~~~a 81 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCTGLLGGA 81 (293)
T ss_pred cCCcceeeecccCCcccCcC-----CCcceeeecchhhhhcccc
Confidence 34588999999999987543 2455699999999999888
No 297
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.23 E-value=1.1 Score=34.16 Aligned_cols=41 Identities=20% Similarity=0.100 Sum_probs=33.7
Q ss_pred EEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhh
Q psy7827 82 VLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTT 124 (140)
Q Consensus 82 vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~ 124 (140)
|+|+.||.|.++.-+.+.+.. -+.++|+++.+++.- .|+..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~--~~~a~e~~~~a~~ty~~N~~~ 42 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFK--CVFASEIDKYAQKTYEANFGN 42 (315)
T ss_pred CEEEecCccHHHHHHHHcCCe--EEEEEeCCHHHHHHHHHhCCC
Confidence 589999999999998876522 367899999999988 77753
No 298
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=86.06 E-value=0.71 Score=36.28 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=15.7
Q ss_pred CCEEEEEcCCCChHHHHHH
Q psy7827 79 GAKVLDVGSGSGYLTTCFA 97 (140)
Q Consensus 79 ~~~vLDiGcG~G~~~~~la 97 (140)
..+|+|+|||+|..++.+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~v 82 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHII 82 (386)
T ss_pred ceeEEEecCCCCccHHHHH
Confidence 5689999999998886653
No 299
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=85.99 E-value=0.94 Score=33.62 Aligned_cols=40 Identities=20% Similarity=0.246 Sum_probs=26.4
Q ss_pred CCCCEEEEEcCCCChHHH-HHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 77 VPGAKVLDVGSGSGYLTT-CFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~-~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
.++.++||||||+-.... .+++.+. +|+..|.++.-.+..
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~---~I~l~dy~~~N~~el 95 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFE---EIVLSDYSEQNREEL 95 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEE---EEEEEESSHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhc---ceEEeeccHhhHHHH
Confidence 457799999999865532 2233333 499999999988877
No 300
>KOG2352|consensus
Probab=85.38 E-value=0.47 Score=38.13 Aligned_cols=46 Identities=28% Similarity=0.321 Sum_probs=39.2
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
..+.++|-+|-|.|.+...+-... +..++++|+++|.|++.| +++.
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~ 340 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFG 340 (482)
T ss_pred cccCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhhc
Confidence 456689999999999999887776 567899999999999999 8764
No 301
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=85.34 E-value=10 Score=27.53 Aligned_cols=74 Identities=12% Similarity=0.092 Sum_probs=43.6
Q ss_pred chHHHHHHHHHHhcccCCCCEEEEEcCCCCh--HHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEE
Q psy7827 61 NPVQHAEVLELLKDKLVPGAKVLDVGSGSGY--LTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKF 136 (140)
Q Consensus 61 ~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~--~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~ 136 (140)
+|...+.+..+.. --+-..++++.|+.|. .++.|+-+. ..+|+++.|-+++..+... +.+...+.. +.++|
T Consensus 26 ep~~aEfISAlAA--G~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~---~~vEf 100 (218)
T PF07279_consen 26 EPGVAEFISALAA--GWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLS---DVVEF 100 (218)
T ss_pred CCCHHHHHHHHhc--cccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcccc---ccceE
Confidence 3444444444433 2244578888766442 344443322 3678999999999887777 777766652 34566
Q ss_pred eec
Q psy7827 137 ICE 139 (140)
Q Consensus 137 ~~g 139 (140)
+.|
T Consensus 101 vvg 103 (218)
T PF07279_consen 101 VVG 103 (218)
T ss_pred Eec
Confidence 543
No 302
>KOG3924|consensus
Probab=85.00 E-value=1.3 Score=34.91 Aligned_cols=52 Identities=31% Similarity=0.411 Sum_probs=38.8
Q ss_pred HHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 65 HAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 65 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
...+.+.+. +.+++...|+|+|.|.+...++..++. ..-+|+++.+..-+.|
T Consensus 181 l~si~dEl~--~g~~D~F~DLGSGVGqlv~~~aa~a~~-k~svG~eim~~pS~~a 232 (419)
T KOG3924|consen 181 LRSIVDELK--LGPADVFMDLGSGVGQLVCFVAAYAGC-KKSVGFEIMDKPSQCA 232 (419)
T ss_pred HHHHHHHhc--cCCCCcccCCCcccchhhHHHHHhhcc-ccccceeeecCcHHHH
Confidence 344555555 889999999999999999988877642 3468888776665555
No 303
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=84.95 E-value=2.9 Score=31.95 Aligned_cols=45 Identities=18% Similarity=0.313 Sum_probs=35.9
Q ss_pred HHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 70 ELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 70 ~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
+.+. +..+.+|.-+|+|.-....++++. .++|..||+++.-+..-
T Consensus 57 eam~--~g~ghrivtigSGGcn~L~ylsr~---Pa~id~VDlN~ahiAln 101 (414)
T COG5379 57 EAMQ--LGIGHRIVTIGSGGCNMLAYLSRA---PARIDVVDLNPAHIALN 101 (414)
T ss_pred HHHh--cCCCcEEEEecCCcchHHHHhhcC---CceeEEEeCCHHHHHHH
Confidence 4445 788999999999987787777766 34699999999887655
No 304
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=84.85 E-value=2.1 Score=32.81 Aligned_cols=43 Identities=28% Similarity=0.224 Sum_probs=36.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 79 GAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 79 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
..+++|+-||.|.+..-+...+.. -+.++|+++..++.- .|+.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~--~~~a~Eid~~a~~ty~~n~~ 46 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFE--IVFANEIDPPAVATYKANFP 46 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCe--EEEEEecCHHHHHHHHHhCC
Confidence 358999999999999998887622 489999999999988 7776
No 305
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=84.84 E-value=2.3 Score=34.72 Aligned_cols=41 Identities=34% Similarity=0.524 Sum_probs=34.9
Q ss_pred CCCCEEEEEcCC-CChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 77 VPGAKVLDVGSG-SGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 77 ~~~~~vLDiGcG-~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
.++.+|+=+||| .|..++..++..+ ++|+++|.+++.++.+
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~a 204 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQV 204 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHH
Confidence 468999999999 5777777888764 4799999999999998
No 306
>KOG2793|consensus
Probab=84.83 E-value=2.2 Score=31.53 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHH
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNH 118 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~ 118 (140)
...+|||+|+|+|..++.++... .+++.--|+..-....
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~~~~~~L 124 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL--GAEVVLTDLPKVVENL 124 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh--cceeccCCchhhHHHH
Confidence 35579999999998888877765 3456666665544433
No 307
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=84.48 E-value=2.8 Score=31.93 Aligned_cols=44 Identities=16% Similarity=0.133 Sum_probs=30.6
Q ss_pred cCCCCEEEEEcCC-CChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSG-SGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
++++++||-+||| .|.++..++++.....+|+++|.+++-++.+
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a 205 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLF 205 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHH
Confidence 4678999999986 3444445555421234699999999888877
No 308
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=84.12 E-value=1.4 Score=32.07 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcccC-CCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 64 QHAEVLELLKDKLV-PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 64 ~~~~~~~~l~~~~~-~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
+...+.+.+. . ...+++|.-||+|..+..+.... .+++.-|+++..+...
T Consensus 8 l~~~I~~~ip---~~~~~~~vepF~G~g~V~~~~~~~~---~~vi~ND~~~~l~~~~ 58 (260)
T PF02086_consen 8 LAKWIIELIP---KNKHKTYVEPFAGGGSVFLNLKQPG---KRVIINDINPDLINFW 58 (260)
T ss_dssp GHHHHHHHS----S-S-SEEEETT-TTSHHHHCC---S---SEEEEEES-HHHHHHH
T ss_pred HHHHHHHHcC---CCCCCEEEEEecchhHHHHHhcccc---cceeeeechHHHHHHH
Confidence 4455666553 2 67899999999999999887643 3599999999887665
No 309
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=83.68 E-value=1.1 Score=31.52 Aligned_cols=37 Identities=27% Similarity=0.385 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCC-CCeEEEEcCCHHHHHHH
Q psy7827 81 KVLDVGSGSGYLTTCFAHMVGK-NGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 81 ~vLDiGcG~G~~~~~la~~~~~-~~~v~gvD~s~~~i~~a 119 (140)
+|--+| .|+.++.+|..+.. +.+|+|+|++++.++..
T Consensus 2 ~I~ViG--lGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l 39 (185)
T PF03721_consen 2 KIAVIG--LGYVGLPLAAALAEKGHQVIGVDIDEEKVEAL 39 (185)
T ss_dssp EEEEE----STTHHHHHHHHHHTTSEEEEE-S-HHHHHHH
T ss_pred EEEEEC--CCcchHHHHHHHHhCCCEEEEEeCChHHHHHH
Confidence 455555 55555544443322 23799999999988877
No 310
>PRK10458 DNA cytosine methylase; Provisional
Probab=83.37 E-value=3 Score=33.66 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=34.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hch
Q psy7827 79 GAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNV 122 (140)
Q Consensus 79 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~ 122 (140)
.-+++|+-||.|.++..+-..+.. .|.++|+++.+.+.- .|+
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~--~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQ--CVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCE--EEEEEechHHHHHHHHHHc
Confidence 458999999999999998776432 489999999998887 775
No 311
>KOG3045|consensus
Probab=83.13 E-value=1.7 Score=32.65 Aligned_cols=29 Identities=14% Similarity=0.261 Sum_probs=21.4
Q ss_pred HHHHHHHHhcccCCCCEEEEEcCCCChHHH
Q psy7827 65 HAEVLELLKDKLVPGAKVLDVGSGSGYLTT 94 (140)
Q Consensus 65 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~ 94 (140)
.+.++..+.. .+....|-|+|||-+.++.
T Consensus 168 ld~ii~~ik~-r~~~~vIaD~GCGEakiA~ 196 (325)
T KOG3045|consen 168 LDVIIRKIKR-RPKNIVIADFGCGEAKIAS 196 (325)
T ss_pred HHHHHHHHHh-CcCceEEEecccchhhhhh
Confidence 5667777762 2345689999999999876
No 312
>KOG0022|consensus
Probab=82.92 E-value=4.5 Score=31.24 Aligned_cols=45 Identities=24% Similarity=0.401 Sum_probs=33.7
Q ss_pred cCCCCEEEEEcCCCChHHHHH-HHHhCCCCeEEEEcCCHHHHHHHhc
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCF-AHMVGKNGSVVGVEHIPEIVNHASN 121 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~l-a~~~~~~~~v~gvD~s~~~i~~a~~ 121 (140)
+.+|+++--+|+|.=.++... ++.. -.++++|||++++-.+.|+.
T Consensus 190 v~~GstvAVfGLG~VGLav~~Gaka~-GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 190 VEPGSTVAVFGLGGVGLAVAMGAKAA-GASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred cCCCCEEEEEecchHHHHHHHhHHhc-CcccEEEEecCHHHHHHHHh
Confidence 778889988988865555444 4443 34689999999999999933
No 313
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=82.32 E-value=5.5 Score=32.36 Aligned_cols=68 Identities=19% Similarity=0.095 Sum_probs=45.6
Q ss_pred ccchHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhC---CCCeEEEEcCCHHHHHHH-hchhhcC
Q psy7827 59 IDNPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVG---KNGSVVGVEHIPEIVNHA-SNVTTLH 126 (140)
Q Consensus 59 ~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~~~~v~gvD~s~~~i~~a-~~~~~~~ 126 (140)
.....+...+.+.+.....++..+.|..||+|.+.....+... ....++|-+..+.+...| .++...+
T Consensus 198 ~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~ 269 (501)
T TIGR00497 198 FTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHN 269 (501)
T ss_pred eCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcC
Confidence 3344555555555542122567999999999999876544321 223599999999999999 8754443
No 314
>KOG2671|consensus
Probab=81.73 E-value=1.2 Score=34.70 Aligned_cols=48 Identities=27% Similarity=0.302 Sum_probs=40.0
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHH-------HH-hchhhcC
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVN-------HA-SNVTTLH 126 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~-------~a-~~~~~~~ 126 (140)
+++|+.|+|--.|||.+....++.+.- |+|.||+-.++. .. .|+++.+
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FGa~---viGtDIDyr~vragrg~~~si~aNFkQYg 261 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFGAY---VIGTDIDYRTVRAGRGEDESIKANFKQYG 261 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhcce---eeccccchheeecccCCCcchhHhHHHhC
Confidence 689999999999999999998888655 999999998886 23 4666666
No 315
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=79.98 E-value=6.8 Score=26.81 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCC
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHI 112 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s 112 (140)
...-|||+|=|+|..--.|-+.+ ++-.|+.+|-.
T Consensus 28 ~~G~VlElGLGNGRTydHLRe~~-p~R~I~vfDR~ 61 (160)
T PF12692_consen 28 LPGPVLELGLGNGRTYDHLREIF-PDRRIYVFDRA 61 (160)
T ss_dssp --S-EEEE--TTSHHHHHHHHH---SS-EEEEESS
T ss_pred CCCceEEeccCCCccHHHHHHhC-CCCeEEEEeee
Confidence 44689999999999999999987 56789999953
No 316
>KOG2798|consensus
Probab=79.16 E-value=3.6 Score=31.66 Aligned_cols=52 Identities=21% Similarity=0.172 Sum_probs=37.7
Q ss_pred HHHHHHHHhcccCC------CCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 65 HAEVLELLKDKLVP------GAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 65 ~~~~~~~l~~~~~~------~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
.+.+++.|....++ .-+||--|||.|.++.-|+..+.. +-|-|.|--|+-..
T Consensus 131 ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~---~qGNEfSy~Mli~S 188 (369)
T KOG2798|consen 131 YKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFK---CQGNEFSYFMLICS 188 (369)
T ss_pred hhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhccc---ccccHHHHHHHHHH
Confidence 45555655532222 458999999999999999998754 77778888887443
No 317
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=79.06 E-value=6.3 Score=29.99 Aligned_cols=42 Identities=29% Similarity=0.425 Sum_probs=33.0
Q ss_pred cCCCCEEEEEcCCC-ChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSGS-GYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
+.++.+||-+|||. |..+..+++..+ .+++++|.+++.++.+
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~ 206 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMM 206 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHH
Confidence 67889999999964 666666777753 4799999999888877
No 318
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=77.20 E-value=4.3 Score=31.25 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=16.4
Q ss_pred CCCCEEEEEcCCCChHHHHHHHH
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHM 99 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~ 99 (140)
+..-+|.|+||.+|..|+.+...
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ 37 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSN 37 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHH
T ss_pred CCceEEEecCCCCCccHHHHHHH
Confidence 34468999999999999876553
No 319
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=75.93 E-value=9.2 Score=27.24 Aligned_cols=42 Identities=33% Similarity=0.530 Sum_probs=32.6
Q ss_pred cCCCCEEEEEcCCC-ChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSGS-GYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
+.++.+||..|+|+ |..+..+++..+ .++++++.+++..+.+
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~ 174 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELA 174 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHH
Confidence 36788999999986 666666666653 5799999998877776
No 320
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=74.64 E-value=13 Score=29.07 Aligned_cols=52 Identities=27% Similarity=0.364 Sum_probs=38.6
Q ss_pred HHHHHhcccCCCCEEEEEcCC-CChHHHHHHHHhCCCCeEEEEcCCHHHHHHHhch
Q psy7827 68 VLELLKDKLVPGAKVLDVGSG-SGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNV 122 (140)
Q Consensus 68 ~~~~l~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a~~~ 122 (140)
.+..++ +++++.|.-+||| .|..++.-|... ...++++||++++-++.|+.+
T Consensus 177 v~nta~--v~~G~tvaV~GlGgVGlaaI~gA~~a-gA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 177 VVNTAK--VEPGDTVAVFGLGGVGLAAIQGAKAA-GAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred hhhccc--CCCCCeEEEEeccHhHHHHHHHHHHc-CCceEEEEeCCHHHHHHHHhc
Confidence 344444 7899999999998 455555556654 356799999999999999333
No 321
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=74.51 E-value=10 Score=28.27 Aligned_cols=42 Identities=31% Similarity=0.468 Sum_probs=33.0
Q ss_pred cCCCCEEEEEcCC-CChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSG-SGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
+.++.+||..|+| .|..+..+++..+ .++++++.+++..+.+
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~ 205 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELA 205 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHH
Confidence 5678899888876 4777777787753 4699999999888776
No 322
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=74.14 E-value=14 Score=28.46 Aligned_cols=42 Identities=21% Similarity=0.270 Sum_probs=31.5
Q ss_pred cCCCCEEEEEcCC-CChHHHHHHHHhCCCC-eEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSG-SGYLTTCFAHMVGKNG-SVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~-~v~gvD~s~~~i~~a 119 (140)
++++++||=+||| .|..+..+++.. ++ +|+++|.+++.++.+
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~--G~~~Vi~~~~~~~~~~~a 226 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMA--KASRIIAIDINPAKFELA 226 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHH
Confidence 6788999999875 344555566664 33 699999999888877
No 323
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=73.70 E-value=13 Score=28.13 Aligned_cols=43 Identities=23% Similarity=0.373 Sum_probs=31.0
Q ss_pred cCCCCEEEEEcCC-CChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSG-SGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
..++++||=.||| .|..+..+++..+ ..+|+++|.+++.++.+
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a 210 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLA 210 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHH
Confidence 4468899989875 4445555666642 12599999999999888
No 324
>PLN02740 Alcohol dehydrogenase-like
Probab=72.94 E-value=9.8 Score=29.41 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=30.9
Q ss_pred cCCCCEEEEEcCC-CChHHHHHHHHhCCCC-eEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSG-SGYLTTCFAHMVGKNG-SVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~-~v~gvD~s~~~i~~a 119 (140)
++++++||=+||| .|..+..+++.. +. +|+++|.+++.++.+
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~--G~~~Vi~~~~~~~r~~~a 239 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARAR--GASKIIGVDINPEKFEKG 239 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC--CCCcEEEEcCChHHHHHH
Confidence 6788999999875 344445555554 33 599999999988887
No 325
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=72.21 E-value=17 Score=28.41 Aligned_cols=56 Identities=13% Similarity=0.240 Sum_probs=38.6
Q ss_pred HHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhC------CCCeEEEEcC----CHHHHHHH-hchhh
Q psy7827 67 EVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVG------KNGSVVGVEH----IPEIVNHA-SNVTT 124 (140)
Q Consensus 67 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~------~~~~v~gvD~----s~~~i~~a-~~~~~ 124 (140)
.+++.+. -.+.-+|+|+|.|.|.--..|.+... +.-+||||+. +...++.+ +++.+
T Consensus 101 aIleA~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~ 167 (374)
T PF03514_consen 101 AILEAFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAE 167 (374)
T ss_pred HHHHHhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHH
Confidence 3445444 23445899999999987666655442 2347999999 88888888 76643
No 326
>KOG2811|consensus
Probab=70.69 E-value=11 Score=29.68 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=28.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhCCCCeEEE---EcCCHHHHH
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVG---VEHIPEIVN 117 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~g---vD~s~~~i~ 117 (140)
++..++|+|||-|.++.+++...+ ..+++- +|-....+.
T Consensus 182 ~~~~~vEFGAGrg~Ls~~vs~~l~-~~~~~l~vlvdR~s~R~K 223 (420)
T KOG2811|consen 182 PSSCFVEFGAGRGELSRWVSDCLQ-IQNVYLFVLVDRKSSRLK 223 (420)
T ss_pred CcceEEEecCCchHHHHHHHHHhc-cccEEEEEeecccchhhh
Confidence 447899999999999999999874 444555 676554443
No 327
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=70.26 E-value=17 Score=27.48 Aligned_cols=42 Identities=26% Similarity=0.179 Sum_probs=31.4
Q ss_pred cCCCCEEEEEcCC-CChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSG-SGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
++++.+||=.|+| .|..+..+++.. +.++++++.+++-.+.+
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a 205 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLA 205 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHH
Confidence 6788999999975 344455566664 34799999999888887
No 328
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=70.20 E-value=35 Score=24.36 Aligned_cols=46 Identities=20% Similarity=0.179 Sum_probs=30.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hchhh
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNVTT 124 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~~~ 124 (140)
.++++|-.|+ +|.++..+++.+ ..+.+|+.++.+++.++.. ..+.+
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~ 57 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRA 57 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHh
Confidence 5678888885 555555555543 3455799999988776666 55544
No 329
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=70.17 E-value=11 Score=30.03 Aligned_cols=41 Identities=20% Similarity=0.119 Sum_probs=31.7
Q ss_pred CCCCEEEEEcCCC-ChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 77 VPGAKVLDVGSGS-GYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 77 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
.++++|+-+|||. |......++.. +++|+.+|.++...+.|
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A 241 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQA 241 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHH
Confidence 5789999999994 55555556654 44799999999888777
No 330
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=69.82 E-value=18 Score=26.56 Aligned_cols=42 Identities=29% Similarity=0.384 Sum_probs=29.5
Q ss_pred cCCCCEEEEEcCC-CChHHHHHHHHhCCCCe-EEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSG-SGYLTTCFAHMVGKNGS-VVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~~-v~gvD~s~~~i~~a 119 (140)
..++++||=+|+| .|.++..+++.. ..+ |+++|.+++.++.+
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~--G~~~Vi~~~~~~~r~~~a 161 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAA--GAARVVAADPSPDRRELA 161 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHH
Confidence 4578899999875 344455556654 334 89999999888777
No 331
>KOG2352|consensus
Probab=69.49 E-value=21 Score=29.03 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=35.1
Q ss_pred cCCCC-EEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 76 LVPGA-KVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~-~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
+.+.. ++|-+|||.-.++..+-+.+.+ .|+.+|+|+-.++..
T Consensus 45 ~~p~~~~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m 87 (482)
T KOG2352|consen 45 LSPSDFKILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAM 87 (482)
T ss_pred hchhhceeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHH
Confidence 45555 9999999999998888776533 499999999999988
No 332
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=69.48 E-value=6 Score=25.26 Aligned_cols=30 Identities=23% Similarity=0.428 Sum_probs=25.8
Q ss_pred CCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 88 GSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 88 G~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
|.|..+..+++..+ .+|+++|.++..++.+
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~ 30 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELA 30 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHH
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHH
Confidence 45788889998875 7899999999999888
No 333
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.29 E-value=37 Score=23.98 Aligned_cols=46 Identities=13% Similarity=0.149 Sum_probs=27.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hchhh
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNVTT 124 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~~~ 124 (140)
+++++|-.|++ |.++..+++.+ ..+.+|+.++.+++.++.+ +.+..
T Consensus 4 ~~~~~lItG~~-g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~ 51 (253)
T PRK08217 4 KDKVIVITGGA-QGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGA 51 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 35678888854 44444454433 2344688888887766655 54433
No 334
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=69.23 E-value=19 Score=26.47 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=29.4
Q ss_pred cCCCCEEEEEcCCCC-------------hHHHHHHHHhCCC-CeEEEEc-CCHHHHHHH-hc
Q psy7827 76 LVPGAKVLDVGSGSG-------------YLTTCFAHMVGKN-GSVVGVE-HIPEIVNHA-SN 121 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G-------------~~~~~la~~~~~~-~~v~gvD-~s~~~i~~a-~~ 121 (140)
+..|..++|||+++. .-..++.+..... ...+.|| .+++.++.| +.
T Consensus 34 ~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSIDT~~~~v~~aaL~~ 95 (258)
T cd00423 34 VEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPISVDTFNAEVAEAALKA 95 (258)
T ss_pred HHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCcHHHHHHHHHh
Confidence 457899999999987 2233344443221 2357888 566677777 54
No 335
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=69.13 E-value=4.6 Score=32.08 Aligned_cols=38 Identities=24% Similarity=0.290 Sum_probs=26.8
Q ss_pred CEEEEEcCCCChHHHHHHHHhCCC-CeEEEEcCCHHHHHHH
Q psy7827 80 AKVLDVGSGSGYLTTCFAHMVGKN-GSVVGVEHIPEIVNHA 119 (140)
Q Consensus 80 ~~vLDiGcG~G~~~~~la~~~~~~-~~v~gvD~s~~~i~~a 119 (140)
.+|--+ |-|+.++++|-.+... .+|+|+||++..++..
T Consensus 10 ~~I~Vi--GLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~l 48 (436)
T COG0677 10 ATIGVI--GLGYVGLPLAAAFASAGFKVIGVDINQKKVDKL 48 (436)
T ss_pred eEEEEE--ccccccHHHHHHHHHcCCceEeEeCCHHHHHHH
Confidence 345445 4677777776665443 4699999999988776
No 336
>PRK06172 short chain dehydrogenase; Provisional
Probab=68.42 E-value=39 Score=24.03 Aligned_cols=46 Identities=13% Similarity=0.071 Sum_probs=28.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hchhh
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNVTT 124 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~~~ 124 (140)
.++++|-.|++ |.++..+++.+ ..+.+|+.++.+++-++.. +.+..
T Consensus 6 ~~k~ilItGas-~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~ 53 (253)
T PRK06172 6 SGKVALVTGGA-AGIGRATALAFAREGAKVVVADRDAAGGEETVALIRE 53 (253)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh
Confidence 35678888864 44444444433 2345799999888766665 55443
No 337
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=68.19 E-value=8.8 Score=30.20 Aligned_cols=33 Identities=24% Similarity=0.475 Sum_probs=22.9
Q ss_pred CCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-h
Q psy7827 88 GSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-S 120 (140)
Q Consensus 88 G~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~ 120 (140)
|.|+.+..++..+..+.+|+++|++++.++.+ +
T Consensus 7 GlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 7 GTGYVGLSNGLLIAQNHEVVALDILPSRVAMLND 40 (388)
T ss_pred CCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHc
Confidence 45555555554433334699999999999888 5
No 338
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=68.11 E-value=20 Score=26.92 Aligned_cols=42 Identities=31% Similarity=0.440 Sum_probs=30.0
Q ss_pred cCCCCEEEEEcCC-CChHHHHHHHHhCCCCe-EEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSG-SGYLTTCFAHMVGKNGS-VVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~~-v~gvD~s~~~i~~a 119 (140)
+.++++||=+|+| .|..+..+++.. +.+ +++++.+++..+.+
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~--G~~~vi~~~~~~~~~~~~ 204 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARAL--GAEDVIGVDPSPERLELA 204 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHH
Confidence 5678899999874 333445556654 345 99999999888777
No 339
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=67.87 E-value=33 Score=27.05 Aligned_cols=58 Identities=22% Similarity=0.224 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCC-CCeEEEEcCCHHHHHHH-hc
Q psy7827 62 PVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGK-NGSVVGVEHIPEIVNHA-SN 121 (140)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~~~v~gvD~s~~~i~~a-~~ 121 (140)
+.....+...+........+++=+|+ |.++..+++.... +..++.+|.+++.++.+ +.
T Consensus 214 ~~~l~~~~~~~~~~~~~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~ 273 (453)
T PRK09496 214 REHIRAVMSEFGRLEKPVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEE 273 (453)
T ss_pred HHHHHHHHHHhCccCCCCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH
Confidence 34445555555432334567887776 7777777776633 45799999999988877 53
No 340
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=67.26 E-value=21 Score=27.46 Aligned_cols=42 Identities=29% Similarity=0.283 Sum_probs=30.7
Q ss_pred cCCCCEEEEEcCC-CChHHHHHHHHhCCCC-eEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSG-SGYLTTCFAHMVGKNG-SVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~-~v~gvD~s~~~i~~a 119 (140)
++++++||=.|+| .|.++..+++.. .. +|+++|.+++.++.+
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~--G~~~Vi~~~~~~~r~~~a 232 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAA--GASQVVAVDLNEDKLALA 232 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEEcCCHHHHHHH
Confidence 6778899889875 344555556654 33 599999999988887
No 341
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=67.25 E-value=17 Score=28.40 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=33.8
Q ss_pred cCCCCEEEEEcC-C-CChHHHHHHHHhCCC-CeEEEEcCCHHHHHHH-hc
Q psy7827 76 LVPGAKVLDVGS-G-SGYLTTCFAHMVGKN-GSVVGVEHIPEIVNHA-SN 121 (140)
Q Consensus 76 ~~~~~~vLDiGc-G-~G~~~~~la~~~~~~-~~v~gvD~s~~~i~~a-~~ 121 (140)
++++++|+=+|+ | .|..+..+++..+.. .+|+++|.+++.++.+ +.
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 567889998873 4 666777777764322 2699999999999988 54
No 342
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=67.22 E-value=26 Score=25.31 Aligned_cols=60 Identities=20% Similarity=0.112 Sum_probs=40.9
Q ss_pred cCCCCEEEEEcCC-CChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhh-cCCCCCCCcEEEee
Q psy7827 76 LVPGAKVLDVGSG-SGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTT-LHYPKLNKRIKFIC 138 (140)
Q Consensus 76 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~-~~~~~~~~~i~~~~ 138 (140)
...++.+|-+|.- +|.++..++ .+..+|+.+|+.|.|-... .+++- ++...+.++++++.
T Consensus 42 ~~E~~~vli~G~YltG~~~a~~L---s~~~~vtv~Di~p~~r~~lp~~v~Fr~~~~~~~G~~Dliv 104 (254)
T COG4017 42 GEEFKEVLIFGVYLTGNYTAQML---SKADKVTVVDIHPFMRGFLPNNVKFRNLLKFIRGEVDLIV 104 (254)
T ss_pred ccCcceEEEEEeeehhHHHHHHh---cccceEEEecCCHHHHhcCCCCccHhhhcCCCCCceeEEE
Confidence 3567899999875 666554443 3345699999999998888 66543 33444567776654
No 343
>PRK07063 short chain dehydrogenase; Provisional
Probab=67.11 E-value=44 Score=23.94 Aligned_cols=46 Identities=15% Similarity=0.270 Sum_probs=29.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hchhh
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNVTT 124 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~~~ 124 (140)
.++++|-.|++.| ++..+++.+ ..+.+|+.++.+++.++.. +.+..
T Consensus 6 ~~k~vlVtGas~g-IG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~ 53 (260)
T PRK07063 6 AGKVALVTGAAQG-IGAAIARAFAREGAAVALADLDAALAERAAAAIAR 53 (260)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 4568888887644 444444433 3445798999888877766 55543
No 344
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=67.02 E-value=34 Score=22.69 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=19.8
Q ss_pred CCCEEEEEcCCCChH-HHHHHHHhCCCCeEEEEcCCHH
Q psy7827 78 PGAKVLDVGSGSGYL-TTCFAHMVGKNGSVVGVEHIPE 114 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~-~~~la~~~~~~~~v~gvD~s~~ 114 (140)
+..+++|+|-|.=.- +..|.+.+ ..|+++|+.+.
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G---~dV~~tDi~~~ 47 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERG---FDVIATDINPR 47 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS----EEEEE-SS-S
T ss_pred CCCcEEEECcCCCHHHHHHHHHcC---CcEEEEECccc
Confidence 455999999886554 44445443 35999999998
No 345
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=66.87 E-value=2.2 Score=26.79 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=13.7
Q ss_pred EEEEcCCCChHHHHHHHHh
Q psy7827 82 VLDVGSGSGYLTTCFAHMV 100 (140)
Q Consensus 82 vLDiGcG~G~~~~~la~~~ 100 (140)
-+|||||.|..--...+.+
T Consensus 6 NIDIGcG~GNTmda~fRsc 24 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAFRSC 24 (124)
T ss_pred ccccccCCCcchhhhhhcc
Confidence 3699999998765555544
No 346
>KOG1253|consensus
Probab=66.53 E-value=2.8 Score=34.06 Aligned_cols=52 Identities=19% Similarity=0.125 Sum_probs=45.1
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCC
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYP 128 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~ 128 (140)
.++-+|||.=|++|.-++..++..+.-.++++-|.++..++.. +|++.++++
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~ 160 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE 160 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch
Confidence 4566899999999999999999886556799999999999999 998888663
No 347
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=65.92 E-value=20 Score=25.99 Aligned_cols=42 Identities=33% Similarity=0.374 Sum_probs=31.9
Q ss_pred cCCCCEEEEEcCCC-ChHHHHHHHHhCCCCe-EEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSGS-GYLTTCFAHMVGKNGS-VVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~~-v~gvD~s~~~i~~a 119 (140)
+.++.++|-.|||. |..+..+++..+ .+ +++++.+++..+.+
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g--~~~vi~~~~~~~~~~~~ 138 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAG--AREVVGVDPDAARRELA 138 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CCcEEEECCCHHHHHHH
Confidence 67888998888764 556666677653 35 99999999988876
No 348
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=65.66 E-value=18 Score=27.57 Aligned_cols=42 Identities=19% Similarity=0.259 Sum_probs=31.0
Q ss_pred cCCCCEEEEEcCC-CChHHHHHHHHhCCCC-eEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSG-SGYLTTCFAHMVGKNG-SVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~-~v~gvD~s~~~i~~a 119 (140)
+.++++||-.||| .|..+..+++.. +. +|+++|.++...+.+
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~--G~~~Vi~~~~~~~~~~~~ 217 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALA--GASKIIAVDIDDRKLEWA 217 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHH
Confidence 6788999999875 344555566664 33 499999999888877
No 349
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=65.20 E-value=11 Score=30.10 Aligned_cols=39 Identities=26% Similarity=0.328 Sum_probs=29.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 79 GAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 79 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
.++|-=| |.|+.+..++..+....+|+|+|++++.++..
T Consensus 6 ~mkI~vI--GlGyvGlpmA~~la~~~~V~g~D~~~~~ve~l 44 (425)
T PRK15182 6 EVKIAII--GLGYVGLPLAVEFGKSRQVVGFDVNKKRILEL 44 (425)
T ss_pred CCeEEEE--CcCcchHHHHHHHhcCCEEEEEeCCHHHHHHH
Confidence 3566666 56777777777665556799999999998887
No 350
>PRK05867 short chain dehydrogenase; Provisional
Probab=65.13 E-value=48 Score=23.68 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=28.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hchhh
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNVTT 124 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~~~ 124 (140)
.++++|-.|++.|. +..+++.+ ..+.+|+.++.+++.++.. +.+..
T Consensus 8 ~~k~vlVtGas~gI-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~ 55 (253)
T PRK05867 8 HGKRALITGASTGI-GKRVALAYVEAGAQVAIAARHLDALEKLADEIGT 55 (253)
T ss_pred CCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 46788888876554 33443333 3345788888888777666 55543
No 351
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=64.73 E-value=28 Score=26.62 Aligned_cols=43 Identities=26% Similarity=0.375 Sum_probs=30.0
Q ss_pred cCCCCEEEEEcCC-CChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSG-SGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
+.++++||=+|+| .|.++..+++..+ -.+|++++.+++..+.+
T Consensus 185 ~~~g~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~~~~~~~~~ 228 (369)
T cd08301 185 VKKGSTVAIFGLGAVGLAVAEGARIRG-ASRIIGVDLNPSKFEQA 228 (369)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHH
Confidence 6788999999864 3334445555542 12699999999888877
No 352
>PRK07677 short chain dehydrogenase; Provisional
Probab=63.90 E-value=51 Score=23.52 Aligned_cols=39 Identities=23% Similarity=0.274 Sum_probs=19.0
Q ss_pred CEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH
Q psy7827 80 AKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 80 ~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a 119 (140)
+++|-.|++.| ++..+++.+ ..+.+|+.++.++...+.+
T Consensus 2 k~~lItG~s~g-iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~ 41 (252)
T PRK07677 2 KVVIITGGSSG-MGKAMAKRFAEEGANVVITGRTKEKLEEA 41 (252)
T ss_pred CEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 45665665444 333333322 2234566666666555444
No 353
>PRK06194 hypothetical protein; Provisional
Probab=62.43 E-value=52 Score=23.94 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=26.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 79 GAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 79 ~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
++++|=.|. +|.++..+++.+ ..+.+|+.+|.+++.++.. +.+.
T Consensus 6 ~k~vlVtGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 51 (287)
T PRK06194 6 GKVAVITGA-ASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELR 51 (287)
T ss_pred CCEEEEeCC-ccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHH
Confidence 457776674 455555555443 2345788888887766655 5443
No 354
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=61.98 E-value=34 Score=26.09 Aligned_cols=42 Identities=21% Similarity=0.191 Sum_probs=33.3
Q ss_pred cCCCCEEEEEcC--CCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGS--GSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGc--G~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
+.++++||=.|+ |.|..+..+++.. +.++++++.+++..+.+
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~ 199 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLL 199 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHH
Confidence 678899999998 3677777788875 34799999988877765
No 355
>KOG1099|consensus
Probab=61.95 E-value=5.2 Score=29.56 Aligned_cols=34 Identities=24% Similarity=0.465 Sum_probs=27.5
Q ss_pred CEEEEEcCCCChHHHHHHHHhCC----CC----eEEEEcCCH
Q psy7827 80 AKVLDVGSGSGYLTTCFAHMVGK----NG----SVVGVEHIP 113 (140)
Q Consensus 80 ~~vLDiGcG~G~~~~~la~~~~~----~~----~v~gvD~s~ 113 (140)
.+++|+++..|..+..|+++.-. .+ +|++||+.+
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~ 84 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP 84 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc
Confidence 58999999999999999987633 22 399999765
No 356
>PRK09242 tropinone reductase; Provisional
Probab=61.87 E-value=56 Score=23.34 Aligned_cols=46 Identities=20% Similarity=0.279 Sum_probs=27.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hchhh
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNVTT 124 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~~~ 124 (140)
.++++|-.|++.|. +..+++.+ ..+.+|+.++.+++..+.. .++..
T Consensus 8 ~~k~~lItGa~~gI-G~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~ 55 (257)
T PRK09242 8 DGQTALITGASKGI-GLAIAREFLGLGADVLIVARDADALAQARDELAE 55 (257)
T ss_pred CCCEEEEeCCCchH-HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh
Confidence 46678888875543 33343333 3345788888887776666 55443
No 357
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=61.47 E-value=17 Score=27.50 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=28.4
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCC
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHI 112 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s 112 (140)
...+..++||-.|||..+..+-+.+.. |++-|+.
T Consensus 25 ~~s~k~f~DiFaGtGVV~~~fkk~~n~---iiaNDle 58 (330)
T COG3392 25 DLSGKIFCDIFAGTGVVGRFFKKAGNK---IIANDLE 58 (330)
T ss_pred ccCCCeeeeeccCccHHHHHHHHhcch---hhhchHH
Confidence 456778999999999999998888755 8888863
No 358
>PRK07904 short chain dehydrogenase; Provisional
Probab=61.32 E-value=52 Score=23.71 Aligned_cols=48 Identities=10% Similarity=0.054 Sum_probs=30.4
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHh-CCC-CeEEEEcCCHHH-HHHH-hchhh
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMV-GKN-GSVVGVEHIPEI-VNHA-SNVTT 124 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~-~~v~gvD~s~~~-i~~a-~~~~~ 124 (140)
+..++++|-.|++ |.++..+++.+ ... .+|+.++.+++- ++.+ +.+..
T Consensus 5 ~~~~~~vlItGas-~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~ 56 (253)
T PRK07904 5 VGNPQTILLLGGT-SEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKA 56 (253)
T ss_pred cCCCcEEEEEcCC-cHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHh
Confidence 4567789988975 55555565543 332 478888887764 5555 55544
No 359
>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]
Probab=60.97 E-value=17 Score=27.91 Aligned_cols=33 Identities=33% Similarity=0.528 Sum_probs=26.2
Q ss_pred CCCEEEEEcCCCCh-HHHHHHHHhCCCCeEEEEc
Q psy7827 78 PGAKVLDVGSGSGY-LTTCFAHMVGKNGSVVGVE 110 (140)
Q Consensus 78 ~~~~vLDiGcG~G~-~~~~la~~~~~~~~v~gvD 110 (140)
.+++||-+|+.+|+ ++..++..+++.+..+||-
T Consensus 40 gPKkVLviGaSsGyGLa~RIsaaFG~gAdTiGVf 73 (398)
T COG3007 40 GPKKVLVIGASSGYGLAARISAAFGPGADTIGVF 73 (398)
T ss_pred CCceEEEEecCCcccHHHHHHHHhCCCCceeeEE
Confidence 45799999999998 5566777777777788874
No 360
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=60.93 E-value=35 Score=25.36 Aligned_cols=42 Identities=29% Similarity=0.426 Sum_probs=31.9
Q ss_pred cCCCCEEEEEcCC-CChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSG-SGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
+.++.+||-.||| .|..+..+++..+ .++++++.+++..+.+
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G--~~v~~~~~~~~~~~~~ 202 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMG--FETVAITRSPDKRELA 202 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHH
Confidence 6678899999886 6666666666643 4799999999888776
No 361
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=60.64 E-value=23 Score=28.02 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=29.9
Q ss_pred CEEEEEcCCCChHHHHHHHHhCCC--CeEEEEcCCHHHHHHH-hc
Q psy7827 80 AKVLDVGSGSGYLTTCFAHMVGKN--GSVVGVEHIPEIVNHA-SN 121 (140)
Q Consensus 80 ~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~i~~a-~~ 121 (140)
++||=||| |..+..++..+..+ .+|+..|.+++..+.+ ..
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~ 44 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAEL 44 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhh
Confidence 47899999 66666666654332 5899999999888888 55
No 362
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=60.45 E-value=37 Score=26.01 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=30.1
Q ss_pred cCCCCEEEEEcCC-CChHHHHHHHHhCCCC-eEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSG-SGYLTTCFAHMVGKNG-SVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~-~v~gvD~s~~~i~~a 119 (140)
++++++||=+|+| .|..+..+++.. +. +++++|.+++.++.+
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~--G~~~vi~~~~~~~~~~~~ 227 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAA--GASRIIGIDINPDKFELA 227 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHH
Confidence 6788999999874 334445555554 33 599999999888876
No 363
>PRK06914 short chain dehydrogenase; Provisional
Probab=60.38 E-value=63 Score=23.42 Aligned_cols=40 Identities=15% Similarity=0.042 Sum_probs=23.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH
Q psy7827 79 GAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 79 ~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a 119 (140)
+.++|-.|+ +|.++..+++.+ ..+.+|++++.+++-.+..
T Consensus 3 ~k~~lItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 43 (280)
T PRK06914 3 KKIAIVTGA-SSGFGLLTTLELAKKGYLVIATMRNPEKQENL 43 (280)
T ss_pred CCEEEEECC-CchHHHHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence 346777774 444455554433 3345788888877666555
No 364
>PRK07035 short chain dehydrogenase; Provisional
Probab=60.04 E-value=60 Score=23.07 Aligned_cols=46 Identities=13% Similarity=0.176 Sum_probs=28.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHH-hCCCCeEEEEcCCHHHHHHH-hchhh
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHM-VGKNGSVVGVEHIPEIVNHA-SNVTT 124 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~-~~~~~~v~gvD~s~~~i~~a-~~~~~ 124 (140)
.++++|=.|++.|.- ..+++. ...+.+|+.++.+++.++.. +.+..
T Consensus 7 ~~k~vlItGas~gIG-~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~ 54 (252)
T PRK07035 7 TGKIALVTGASRGIG-EAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVA 54 (252)
T ss_pred CCCEEEEECCCcHHH-HHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 356788888665543 333333 23345799999887766666 55443
No 365
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=60.04 E-value=59 Score=23.04 Aligned_cols=48 Identities=13% Similarity=0.145 Sum_probs=31.8
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhC-CCCeEEEEcCCHHHHHHH-hchhh
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVG-KNGSVVGVEHIPEIVNHA-SNVTT 124 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~~v~gvD~s~~~i~~a-~~~~~ 124 (140)
..+++++|=.|+ +|.++..+++.+. .+.+|++++.+++..+.. +.+..
T Consensus 9 ~~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~ 58 (247)
T PRK08945 9 LLKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEA 58 (247)
T ss_pred ccCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHh
Confidence 346778999995 5666666655442 344799999988766665 55443
No 366
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=59.81 E-value=37 Score=25.96 Aligned_cols=42 Identities=24% Similarity=0.378 Sum_probs=30.1
Q ss_pred cCCCCEEEEEcCC-CChHHHHHHHHhCCCC-eEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSG-SGYLTTCFAHMVGKNG-SVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~-~v~gvD~s~~~i~~a 119 (140)
+.++.+||=+|+| .|..+..+++.. +. +|+++|.+++..+.+
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~--G~~~Vi~~~~~~~~~~~~ 225 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIA--GASRIIGVDINEDKFEKA 225 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHH
Confidence 6788999988874 344445556654 33 699999998888777
No 367
>PRK05866 short chain dehydrogenase; Provisional
Probab=59.67 E-value=66 Score=23.85 Aligned_cols=45 Identities=20% Similarity=0.355 Sum_probs=28.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
.++++|=.|++. .++..+++.+ ..+.+|+.++.+++.++.. +.+.
T Consensus 39 ~~k~vlItGasg-gIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~ 85 (293)
T PRK05866 39 TGKRILLTGASS-GIGEAAAEQFARRGATVVAVARREDLLDAVADRIT 85 (293)
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence 346788888654 4444454433 3345799999888777666 5544
No 368
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=59.45 E-value=25 Score=28.88 Aligned_cols=40 Identities=33% Similarity=0.498 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCC-ChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 78 PGAKVLDVGSGS-GYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 78 ~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
++.+++-+|||. |..+..+++..+ +.|+.+|.+++.++.+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a 203 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQV 203 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHH
Confidence 568999999984 566666777654 4699999999988887
No 369
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=59.39 E-value=5.3 Score=31.37 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=31.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
...++||+|.|.|....++-...+.--.++-++.|+..-+..
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~ 154 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVG 154 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHH
Confidence 456799999999998887766664333577788888776555
No 370
>PRK08703 short chain dehydrogenase; Provisional
Probab=59.15 E-value=49 Score=23.32 Aligned_cols=44 Identities=16% Similarity=0.176 Sum_probs=28.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hch
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNV 122 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~ 122 (140)
+++++|-.|+ +|.++..+++.+ ..+.+|+.++.+++..+.. ..+
T Consensus 5 ~~k~vlItG~-sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l 50 (239)
T PRK08703 5 SDKTILVTGA-SQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAI 50 (239)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHH
Confidence 3568888885 455555555443 2345788888888766655 544
No 371
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=58.98 E-value=28 Score=26.44 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=30.6
Q ss_pred cCCCCEEEEEcCC-CChHHHHHHHHhCCCCeEEEEcC---CHHHHHHH
Q psy7827 76 LVPGAKVLDVGSG-SGYLTTCFAHMVGKNGSVVGVEH---IPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~~v~gvD~---s~~~i~~a 119 (140)
+.++.+||=+|+| .|.++..+++..+ .++++++. ++.-.+.+
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~ 215 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIV 215 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHH
Confidence 3578899999986 3666666777753 37999986 67777766
No 372
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=58.74 E-value=25 Score=23.10 Aligned_cols=33 Identities=21% Similarity=0.173 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCh-HHHHHHHHhCCCCeEEEEcCCHH
Q psy7827 79 GAKVLDVGSGSGY-LTTCFAHMVGKNGSVVGVEHIPE 114 (140)
Q Consensus 79 ~~~vLDiGcG~G~-~~~~la~~~~~~~~v~gvD~s~~ 114 (140)
.++|.|+|.|-=. .+..|++.+ ..++++|+.+.
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g---~dv~atDI~~~ 47 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERG---FDVLATDINEK 47 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcC---CcEEEEecccc
Confidence 3499999976433 233444443 45999999987
No 373
>PRK12829 short chain dehydrogenase; Provisional
Probab=58.50 E-value=61 Score=23.09 Aligned_cols=42 Identities=14% Similarity=0.155 Sum_probs=28.2
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a 119 (140)
.+++++|-.|++ |.++..+++.+ ..+.+|++++.+++..+..
T Consensus 9 ~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~ 51 (264)
T PRK12829 9 LDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAAT 51 (264)
T ss_pred cCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 467899988875 55555555543 3345799999887766554
No 374
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=58.03 E-value=37 Score=24.00 Aligned_cols=42 Identities=19% Similarity=0.135 Sum_probs=31.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhC-CCCeEEEEcCCHHHHHHH-hc
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVG-KNGSVVGVEHIPEIVNHA-SN 121 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~-~~~~v~gvD~s~~~i~~a-~~ 121 (140)
.+++++=+|.| .++..+++.+. .+.+|+++|.+++.++.. ..
T Consensus 27 ~gk~v~I~G~G--~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~ 70 (200)
T cd01075 27 EGKTVAVQGLG--KVGYKLAEHLLEEGAKLIVADINEEAVARAAEL 70 (200)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 57899999987 56666666542 345899999999887776 54
No 375
>PRK07890 short chain dehydrogenase; Provisional
Probab=57.53 E-value=67 Score=22.83 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=27.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
.++++|=.|+ +|.++..+++.+ ..+.+|+.++.++.-.+.. ..+.
T Consensus 4 ~~k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 50 (258)
T PRK07890 4 KGKVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEID 50 (258)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence 4567887775 444444444433 3445788888887766555 4443
No 376
>PRK08862 short chain dehydrogenase; Provisional
Probab=57.43 E-value=44 Score=23.78 Aligned_cols=46 Identities=11% Similarity=0.130 Sum_probs=26.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhh
Q psy7827 79 GAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTT 124 (140)
Q Consensus 79 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~ 124 (140)
++++|=.|++.|.-.....+....+.+|+.++.+++.++.. +.+.+
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~ 51 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSA 51 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 56777777777653222222223344677777777777666 55544
No 377
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=57.14 E-value=8.9 Score=27.83 Aligned_cols=30 Identities=17% Similarity=0.149 Sum_probs=21.9
Q ss_pred CEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCH
Q psy7827 80 AKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIP 113 (140)
Q Consensus 80 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~ 113 (140)
-++|||||=+......-...+ .|+.||+++
T Consensus 53 lrlLEVGals~~N~~s~~~~f----dvt~IDLns 82 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWF----DVTRIDLNS 82 (219)
T ss_pred ceEEeecccCCCCcccccCce----eeEEeecCC
Confidence 589999998776655433333 399999987
No 378
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=56.83 E-value=20 Score=26.79 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=26.6
Q ss_pred CEEEEEcCCCCh--HHHHHHHHhCCCCeEEEEcCCHHHHHHH-hch
Q psy7827 80 AKVLDVGSGSGY--LTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNV 122 (140)
Q Consensus 80 ~~vLDiGcG~G~--~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~ 122 (140)
.+|--||+|+=. ++..++.. +.+|+.+|.+++.++.+ +++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~---G~~V~l~d~~~~~~~~~~~~i 48 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA---GVDVLVFETTEELATAGRNRI 48 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC---CCEEEEEECCHHHHHHHHHHH
Confidence 367788887322 33333333 33699999999999886 554
No 379
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=56.48 E-value=23 Score=26.39 Aligned_cols=40 Identities=30% Similarity=0.323 Sum_probs=25.4
Q ss_pred CEEEEEcCCC-C-hHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hch
Q psy7827 80 AKVLDVGSGS-G-YLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNV 122 (140)
Q Consensus 80 ~~vLDiGcG~-G-~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~ 122 (140)
.+|.=||+|. | .++..++.. +.+|+.+|.+++.++.+ +.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~---G~~V~l~d~~~~~l~~~~~~i 46 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART---GYDVTIVDVSEEILKNAMELI 46 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHH
Confidence 3677788773 2 233333333 23699999999999876 543
No 380
>PTZ00357 methyltransferase; Provisional
Probab=56.07 E-value=58 Score=28.31 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=28.9
Q ss_pred EEEEEcCCCChHHHHHHHHh---CCCCeEEEEcCCHHHHHHH
Q psy7827 81 KVLDVGSGSGYLTTCFAHMV---GKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 81 ~vLDiGcG~G~~~~~la~~~---~~~~~v~gvD~s~~~i~~a 119 (140)
.|+-+|+|-|-+.....+.. +...+|++||.++..+...
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~t 744 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFT 744 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHH
Confidence 58999999999876655543 3455799999997655444
No 381
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=56.05 E-value=72 Score=22.74 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhC-CCCeEEEEcCCHHHHHHH-hchhh
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVG-KNGSVVGVEHIPEIVNHA-SNVTT 124 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~-~~~~v~gvD~s~~~i~~a-~~~~~ 124 (140)
.++++|=.| |+|.++..+++.+. .+.+|+.++.+++.++.. ..+..
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~ 56 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKG 56 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh
Confidence 467888888 46666766666543 345799999988777666 55544
No 382
>PRK07062 short chain dehydrogenase; Provisional
Probab=55.92 E-value=73 Score=22.83 Aligned_cols=45 Identities=18% Similarity=0.177 Sum_probs=27.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
.++.+|=.|++.|. +..+++.+ ..+.+|+.++.+++-++.+ +.+.
T Consensus 7 ~~k~~lItGas~gi-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 53 (265)
T PRK07062 7 EGRVAVVTGGSSGI-GLATVELLLEAGASVAICGRDEERLASAEARLR 53 (265)
T ss_pred CCCEEEEeCCCchH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHH
Confidence 45678888865544 34444433 3345788888888776666 5443
No 383
>PRK05854 short chain dehydrogenase; Provisional
Probab=55.55 E-value=86 Score=23.49 Aligned_cols=45 Identities=13% Similarity=0.149 Sum_probs=26.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHH-hCCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHM-VGKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~-~~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
.+++++=.|++.|. +..+++. ...+.+|+.+..+++-.+.+ +.+.
T Consensus 13 ~gk~~lITGas~GI-G~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~ 59 (313)
T PRK05854 13 SGKRAVVTGASDGL-GLGLARRLAAAGAEVILPVRNRAKGEAAVAAIR 59 (313)
T ss_pred CCCEEEEeCCCChH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 35677777766554 3333333 23445788888887766666 5554
No 384
>PRK05876 short chain dehydrogenase; Provisional
Probab=54.90 E-value=82 Score=23.05 Aligned_cols=45 Identities=18% Similarity=0.195 Sum_probs=26.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
.++++|-.|+++| ++..+++.+ ..+.+|+.++.+++-++.. +.+.
T Consensus 5 ~~k~vlVTGas~g-IG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~ 51 (275)
T PRK05876 5 PGRGAVITGGASG-IGLATGTEFARRGARVVLGDVDKPGLRQAVNHLR 51 (275)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 3556777776544 444444433 2344688888777666655 5544
No 385
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=54.58 E-value=39 Score=25.74 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=26.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhCC-CCeEEEEcCCH
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVGK-NGSVVGVEHIP 113 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~~-~~~v~gvD~s~ 113 (140)
.+++||=.| |+|+++..+.+.+-. +.+|+++|...
T Consensus 14 ~~~~vlVtG-atGfiG~~lv~~L~~~g~~V~~~d~~~ 49 (348)
T PRK15181 14 APKRWLITG-VAGFIGSGLLEELLFLNQTVIGLDNFS 49 (348)
T ss_pred cCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 457888888 899999888777632 34799999754
No 386
>PLN02827 Alcohol dehydrogenase-like
Probab=54.48 E-value=41 Score=26.02 Aligned_cols=43 Identities=28% Similarity=0.426 Sum_probs=29.4
Q ss_pred cCCCCEEEEEcCC-CChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSG-SGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
+.++++||-.|+| .|.++..+++..+ -..++++|.+++..+.+
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~~~~~~~~~~a 234 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRG-ASQIIGVDINPEKAEKA 234 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHH
Confidence 6788999999874 3334444555542 12488999998888777
No 387
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=54.48 E-value=30 Score=25.85 Aligned_cols=42 Identities=26% Similarity=0.191 Sum_probs=29.8
Q ss_pred CCCCEEEEEcCC-CChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 77 VPGAKVLDVGSG-SGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 77 ~~~~~vLDiGcG-~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
.+++++|=+||| .|.++..+++..+. ..++++|.+++.++.|
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~-~~v~~~~~~~~rl~~a 185 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGG-SPPAVWETNPRRRDGA 185 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHhh
Confidence 356788888876 46666667776532 2377889999888877
No 388
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=54.37 E-value=42 Score=27.54 Aligned_cols=46 Identities=17% Similarity=0.037 Sum_probs=28.3
Q ss_pred cCCCCEEEEEcCCCChH----HHHHHHHhCCC-CeEEEEc-CCHHHHHHH-hc
Q psy7827 76 LVPGAKVLDVGSGSGYL----TTCFAHMVGKN-GSVVGVE-HIPEIVNHA-SN 121 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~----~~~la~~~~~~-~~v~gvD-~s~~~i~~a-~~ 121 (140)
+..|..|+||||+++.- ...+.+..... ...++|| .+++.++.| +.
T Consensus 175 ~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~~~pISIDT~~~~v~eaAL~a 227 (499)
T TIGR00284 175 ERDGADMVALGTGSFDDDPDVVKEKVKTALDALDSPVIADTPTLDELYEALKA 227 (499)
T ss_pred HHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhCCCcEEEeCCCHHHHHHHHHc
Confidence 46889999999998732 22222222221 2368999 566677777 43
No 389
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=54.15 E-value=40 Score=25.20 Aligned_cols=42 Identities=29% Similarity=0.321 Sum_probs=31.5
Q ss_pred cCCCCEEEEEcCCC-ChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSGS-GYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
+.++.+||-.|+|. |..+..+++.. +.+++++..+++..+.+
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~ 199 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFA 199 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHH
Confidence 67888999998763 66777777775 45789988888777665
No 390
>PRK08339 short chain dehydrogenase; Provisional
Probab=54.12 E-value=82 Score=22.81 Aligned_cols=45 Identities=16% Similarity=0.179 Sum_probs=27.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHH-hCCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHM-VGKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~-~~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
.++++|-.|++.|.- ..+++. ...+.+|+.++.+++-++.+ +.+.
T Consensus 7 ~~k~~lItGas~gIG-~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 53 (263)
T PRK08339 7 SGKLAFTTASSKGIG-FGVARVLARAGADVILLSRNEENLKKAREKIK 53 (263)
T ss_pred CCCEEEEeCCCCcHH-HHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 456778777665543 333333 23345788888887776666 5543
No 391
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=53.99 E-value=27 Score=25.87 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=23.0
Q ss_pred EEEEEcCCC--ChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 81 KVLDVGSGS--GYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 81 ~vLDiGcG~--G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
+|.=||+|. +.++..++... .+|+.+|++++.++.+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g---~~V~~~d~~~~~~~~~ 42 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAG---YDVVMVDISDAAVDRG 42 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCC---CceEEEeCCHHHHHHH
Confidence 566777762 33333343332 3699999999998754
No 392
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=53.55 E-value=80 Score=22.55 Aligned_cols=46 Identities=26% Similarity=0.295 Sum_probs=31.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhC-CCCeEEEEcCCHHHHHHH-hchhh
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVG-KNGSVVGVEHIPEIVNHA-SNVTT 124 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~-~~~~v~gvD~s~~~i~~a-~~~~~ 124 (140)
.++++|=.| |+|.++..+++.+. .+.+|+.++.+++-++.. ..+..
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~ 58 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEA 58 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh
Confidence 467888888 56666666666543 345789998888776666 55443
No 393
>PRK07102 short chain dehydrogenase; Provisional
Probab=53.32 E-value=78 Score=22.35 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=26.3
Q ss_pred CEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hch
Q psy7827 80 AKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNV 122 (140)
Q Consensus 80 ~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~ 122 (140)
++++-.|+ +|.++..+++.+ ..+.+|+.++.+++-.+.. +.+
T Consensus 2 ~~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~ 45 (243)
T PRK07102 2 KKILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDL 45 (243)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHH
Confidence 36777774 456666655544 2344788898888766555 443
No 394
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=52.51 E-value=40 Score=25.04 Aligned_cols=67 Identities=16% Similarity=0.096 Sum_probs=49.1
Q ss_pred CCCCcccchHHHHHHHHHHhcccC-CCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHHhchhh
Q psy7827 54 GYGSIIDNPVQHAEVLELLKDKLV-PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTT 124 (140)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~l~~~~~-~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a~~~~~ 124 (140)
+.|...+...+.+.++..+. +. ..-.|+|--+|-=.++.-..+-+ +.-++-+|+|...+..|+++.+
T Consensus 111 GeGC~Cp~~allR~~l~~l~--~~~~e~VivDtEAGiEHfgRg~~~~v--D~vivVvDpS~~sl~taeri~~ 178 (255)
T COG3640 111 GEGCACPMNALLRRLLRHLI--LNRYEVVIVDTEAGIEHFGRGTIEGV--DLVIVVVDPSYKSLRTAERIKE 178 (255)
T ss_pred CCcccchHHHHHHHHHHHHh--cccCcEEEEecccchhhhccccccCC--CEEEEEeCCcHHHHHHHHHHHH
Confidence 45566666677777777776 55 34578999999888877776654 5568899999999999944443
No 395
>PRK07814 short chain dehydrogenase; Provisional
Probab=52.44 E-value=86 Score=22.56 Aligned_cols=45 Identities=9% Similarity=0.088 Sum_probs=29.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
+++++|=.|. +|.++..+++.+ ..+.+|+.++.+++.++.. +.+.
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~ 55 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIR 55 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 4678888884 566666665543 3455799999888776665 5443
No 396
>KOG0822|consensus
Probab=52.36 E-value=99 Score=25.91 Aligned_cols=54 Identities=19% Similarity=0.332 Sum_probs=38.4
Q ss_pred CEEEEEcCCCChHHHHHHHH---hCCCCeEEEEcCCHHHHHHH--hchhhcCCCCCCCcEEEee
Q psy7827 80 AKVLDVGSGSGYLTTCFAHM---VGKNGSVVGVEHIPEIVNHA--SNVTTLHYPKLNKRIKFIC 138 (140)
Q Consensus 80 ~~vLDiGcG~G~~~~~la~~---~~~~~~v~gvD~s~~~i~~a--~~~~~~~~~~~~~~i~~~~ 138 (140)
..|+-+|.|-|=+.....+. ....-++++||.+|.++-.. .++.-+ .++|+++.
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W-----~~~Vtii~ 427 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECW-----DNRVTIIS 427 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhh-----cCeeEEEe
Confidence 46899999999887665544 33455799999999999888 344443 34666654
No 397
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=52.14 E-value=57 Score=21.36 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=29.6
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCC--CCeEEEEcCCHHHHHHH-hchh
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGK--NGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~--~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
..+.+++-+||| ..+..+++.+.. ..+++.+|.+++..+.. +.+.
T Consensus 17 ~~~~~i~iiG~G--~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~ 64 (155)
T cd01065 17 LKGKKVLILGAG--GAARAVAYALAELGAAKIVIVNRTLEKAKALAERFG 64 (155)
T ss_pred CCCCEEEEECCc--HHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHh
Confidence 356789999985 555555554322 23699999998877665 5443
No 398
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=51.45 E-value=21 Score=29.73 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=26.7
Q ss_pred EEEEEcCCCChHHHHHHHHhC-CCCeEEEEcCCHHHHHHH
Q psy7827 81 KVLDVGSGSGYLTTCFAHMVG-KNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 81 ~vLDiGcG~G~~~~~la~~~~-~~~~v~gvD~s~~~i~~a 119 (140)
+|+= ||.|.++..+++... .+-.++.+|.+++.++.+
T Consensus 402 ~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~ 439 (601)
T PRK03659 402 QVII--VGFGRFGQVIGRLLMANKMRITVLERDISAVNLM 439 (601)
T ss_pred CEEE--ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHH
Confidence 4444 567777777776543 234699999999999888
No 399
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=51.26 E-value=19 Score=30.26 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=26.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHh------CC-----CCeEEEEcCCH
Q psy7827 79 GAKVLDVGSGSGYLTTCFAHMV------GK-----NGSVVGVEHIP 113 (140)
Q Consensus 79 ~~~vLDiGcG~G~~~~~la~~~------~~-----~~~v~gvD~s~ 113 (140)
.-+|+|+|-|+|...+...+.. .+ .-+++++|..|
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p 103 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFP 103 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCC
Confidence 3589999999999887776655 11 23799999644
No 400
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=51.24 E-value=90 Score=22.44 Aligned_cols=47 Identities=15% Similarity=0.110 Sum_probs=27.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhh
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTT 124 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~ 124 (140)
.++++|-.|++.|.-.....+....+.+++.++.+++.++.. ..+..
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~ 56 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRE 56 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh
Confidence 456788888765543322222222344688888887766665 55543
No 401
>PRK06181 short chain dehydrogenase; Provisional
Probab=50.97 E-value=89 Score=22.32 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=24.9
Q ss_pred CEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 80 AKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 80 ~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
.++|-.|+ +|.++..+++.+ ..+.+|++++.++.-.+.. +.+.
T Consensus 2 ~~vlVtGa-sg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~ 46 (263)
T PRK06181 2 KVVIITGA-SEGIGRALAVRLARAGAQLVLAARNETRLASLAQELA 46 (263)
T ss_pred CEEEEecC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 35676664 445555554433 2345788888887665555 4443
No 402
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=50.97 E-value=45 Score=24.93 Aligned_cols=41 Identities=27% Similarity=0.399 Sum_probs=29.7
Q ss_pred CCCEEEEEcCCC-ChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 78 PGAKVLDVGSGS-GYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 78 ~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
++.+||-.|||. |..+..+++..+. .++++++.++...+.+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~-~~v~~~~~s~~~~~~~ 206 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGA-AEIVATDLADAPLAVA 206 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHH
Confidence 788888888764 5566666666421 1589999998888765
No 403
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=50.79 E-value=89 Score=22.27 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=26.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHH-hCCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHM-VGKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~-~~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
.++++|-.|++.|. +..+++. ...+.+++.++.++...+.. ..+.
T Consensus 10 ~~k~vlVtG~s~gI-G~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~ 56 (255)
T PRK06113 10 DGKCAIITGAGAGI-GKEIAITFATAGASVVVSDINADAANHVVDEIQ 56 (255)
T ss_pred CCCEEEEECCCchH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHH
Confidence 36788888855444 4444433 23345688888777766655 4443
No 404
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=50.79 E-value=28 Score=25.77 Aligned_cols=36 Identities=28% Similarity=0.296 Sum_probs=22.9
Q ss_pred EEEEEcCCC--ChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 81 KVLDVGSGS--GYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 81 ~vLDiGcG~--G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
+|.=||+|. |.++..+.+. +.+|+++|.+++.++.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~---g~~V~~~d~~~~~~~~a 39 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL---GHTVYGVSRRESTCERA 39 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC---CCEEEEEECCHHHHHHH
Confidence 455677653 2333333333 23699999999988877
No 405
>KOG0023|consensus
Probab=50.78 E-value=52 Score=25.66 Aligned_cols=48 Identities=25% Similarity=0.273 Sum_probs=37.9
Q ss_pred cCCCCEEEEEcC-CCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhc
Q psy7827 76 LVPGAKVLDVGS-GSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTL 125 (140)
Q Consensus 76 ~~~~~~vLDiGc-G~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~ 125 (140)
+.+|+++-=+|. |-|.++..+|++.+. +|++||-+..--+.| +++.+.
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAMG~--rV~vis~~~~kkeea~~~LGAd 228 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAMGM--RVTVISTSSKKKEEAIKSLGAD 228 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHhCc--EEEEEeCCchhHHHHHHhcCcc
Confidence 678888877775 489999999999854 899999998777777 665443
No 406
>PRK06940 short chain dehydrogenase; Provisional
Probab=50.40 E-value=97 Score=22.61 Aligned_cols=41 Identities=22% Similarity=0.269 Sum_probs=23.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 81 KVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 81 ~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
.+|=-|+ |.++..+++.+..+.+|+.++.+++-++.. +.+.
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~ 45 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLR 45 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHH
Confidence 3444453 356666666665455677777776655544 4443
No 407
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=50.22 E-value=74 Score=22.25 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=26.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a 119 (140)
+++++|-.|++ |.++..+++.+ ..+.+|++++.+++-.+..
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~ 45 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRM 45 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 35688888875 55555555443 3445799998887766555
No 408
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=50.15 E-value=51 Score=22.81 Aligned_cols=41 Identities=20% Similarity=0.303 Sum_probs=23.8
Q ss_pred EEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hchhh
Q psy7827 82 VLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNVTT 124 (140)
Q Consensus 82 vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~~~ 124 (140)
|-=+|+|+ .+..++..+ ..+.+|+-+|.+++.++.+ +++..
T Consensus 2 V~ViGaG~--mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 2 VAVIGAGT--MGRGIAALFARAGYEVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp EEEES-SH--HHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHH
T ss_pred EEEEcCCH--HHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHH
Confidence 45567754 333332221 1234699999999999888 76654
No 409
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=49.93 E-value=23 Score=29.11 Aligned_cols=38 Identities=16% Similarity=0.110 Sum_probs=26.5
Q ss_pred CEEEEEcCCCChHHHHHHHHhCC-CCeEEEEcCCHHHHHHH
Q psy7827 80 AKVLDVGSGSGYLTTCFAHMVGK-NGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 80 ~~vLDiGcG~G~~~~~la~~~~~-~~~v~gvD~s~~~i~~a 119 (140)
++++= ||.|..+..+++.... +..++.+|.+++.++.+
T Consensus 418 ~hiiI--~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~ 456 (558)
T PRK10669 418 NHALL--VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDEL 456 (558)
T ss_pred CCEEE--ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHH
Confidence 34554 4566677777776532 33699999999998887
No 410
>PRK07109 short chain dehydrogenase; Provisional
Probab=49.46 E-value=1.1e+02 Score=23.14 Aligned_cols=47 Identities=13% Similarity=0.068 Sum_probs=28.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hchhhc
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNVTTL 125 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~~~~ 125 (140)
.++++|=.|++ |.++..+++.+ ..+.+|+.++.+++.++.. +.+...
T Consensus 7 ~~k~vlITGas-~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~ 55 (334)
T PRK07109 7 GRQVVVITGAS-AGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAA 55 (334)
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 34577777754 44444444433 2345788888888777666 555443
No 411
>KOG1209|consensus
Probab=49.39 E-value=33 Score=25.28 Aligned_cols=36 Identities=28% Similarity=0.292 Sum_probs=28.0
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhCCCC-eEEEEcCC
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNG-SVVGVEHI 112 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~~~~-~v~gvD~s 112 (140)
.....||-.||..|.++..+++.+..+| .|++.-.+
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~ 41 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARR 41 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccc
Confidence 3567899999999999999998875544 67776543
No 412
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=49.30 E-value=38 Score=26.98 Aligned_cols=41 Identities=24% Similarity=0.175 Sum_probs=29.0
Q ss_pred CCCCEEEEEcCCC-ChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 77 VPGAKVLDVGSGS-GYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 77 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
..+++|+=+|+|. |......++.. +.+|+++|.++.....|
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~--Ga~ViV~d~dp~r~~~A 234 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM--GARVIVTEVDPIRALEA 234 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC--cCEEEEEeCChhhHHHH
Confidence 5789999999985 55555555544 45799999888654444
No 413
>PRK06057 short chain dehydrogenase; Provisional
Probab=49.26 E-value=69 Score=22.87 Aligned_cols=41 Identities=22% Similarity=0.205 Sum_probs=26.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a 119 (140)
.++++|-.|++ |.++..+++.+ ..+.+|+.++.++.-.+..
T Consensus 6 ~~~~vlItGas-ggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~ 47 (255)
T PRK06057 6 AGRVAVITGGG-SGIGLATARRLAAEGATVVVGDIDPEAGKAA 47 (255)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 46788888875 45555555544 3345788888887655444
No 414
>PLN02780 ketoreductase/ oxidoreductase
Probab=49.06 E-value=63 Score=24.45 Aligned_cols=46 Identities=22% Similarity=0.292 Sum_probs=29.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hchhh
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNVTT 124 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~~~ 124 (140)
.+..+|=.|++.|. +..+++.+ ..+.+|+.++.+++.++.. +.+..
T Consensus 52 ~g~~~lITGAs~GI-G~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~ 99 (320)
T PLN02780 52 YGSWALVTGPTDGI-GKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQS 99 (320)
T ss_pred cCCEEEEeCCCcHH-HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH
Confidence 36788888876554 44444433 2344799999998888777 65543
No 415
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=48.91 E-value=38 Score=25.14 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=24.6
Q ss_pred EEEEEcCCCChHHHHHHHHhC-CCCeEEEEcCCHHHHHHH-hc
Q psy7827 81 KVLDVGSGSGYLTTCFAHMVG-KNGSVVGVEHIPEIVNHA-SN 121 (140)
Q Consensus 81 ~vLDiGcG~G~~~~~la~~~~-~~~~v~gvD~s~~~i~~a-~~ 121 (140)
+|.=||+| ..+..++..+. .+.+|+.+|.+++.++.+ ++
T Consensus 3 ~V~VIG~G--~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~ 43 (288)
T PRK09260 3 KLVVVGAG--VMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQE 43 (288)
T ss_pred EEEEECcc--HHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Confidence 56667765 33333333321 123599999999999887 54
No 416
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=48.84 E-value=95 Score=22.04 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=27.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hchhh
Q psy7827 79 GAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNVTT 124 (140)
Q Consensus 79 ~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~~~ 124 (140)
++++|=.|+ +|.++..+++.+ ..+.+|+.++.+++..+.+ +.+..
T Consensus 7 ~~~vlItGa-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~ 53 (262)
T PRK13394 7 GKTAVVTGA-ASGIGKEIALELARAGAAVAIADLNQDGANAVADEINK 53 (262)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHh
Confidence 567775554 455555555443 3345788888888776666 55543
No 417
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=48.50 E-value=1.1e+02 Score=22.67 Aligned_cols=49 Identities=8% Similarity=0.142 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHhccc--CCCCEEEEEcCCCChHHHHHHHHh---C-CCCeEEEEc
Q psy7827 62 PVQHAEVLELLKDKL--VPGAKVLDVGSGSGYLTTCFAHMV---G-KNGSVVGVE 110 (140)
Q Consensus 62 ~~~~~~~~~~l~~~~--~~~~~vLDiGcG~G~~~~~la~~~---~-~~~~v~gvD 110 (140)
......+...+..-+ .-+..|+|.||-.|..++.++... + ++-++++.|
T Consensus 56 ~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfD 110 (248)
T PF05711_consen 56 RERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFD 110 (248)
T ss_dssp HHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 333444444443222 345689999999998887665433 2 233688888
No 418
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=48.44 E-value=1e+02 Score=22.29 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=26.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
.++++|-.|++.| ++..+++.+ ..+.+|+.++.+++..+.. +.+.
T Consensus 9 ~~k~vlVtGas~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 55 (278)
T PRK08277 9 KGKVAVITGGGGV-LGGAMAKELARAGAKVAILDRNQEKAEAVVAEIK 55 (278)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 3567777776544 444444433 3445788888887766655 5443
No 419
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=48.24 E-value=94 Score=21.81 Aligned_cols=45 Identities=16% Similarity=0.134 Sum_probs=28.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhC-CCCeEEEEcCCHHHHHHH-hchh
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVG-KNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~-~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
.++++|=.|+ +|.++..+++.+. .+.+|++++.++..+... ..+.
T Consensus 5 ~~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~ 51 (251)
T PRK12826 5 EGRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVE 51 (251)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 3567886774 5666666655442 345799999887665555 4443
No 420
>PRK05650 short chain dehydrogenase; Provisional
Probab=48.22 E-value=1e+02 Score=22.22 Aligned_cols=42 Identities=12% Similarity=-0.009 Sum_probs=22.9
Q ss_pred EEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 81 KVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 81 ~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
++|-.|+ +|.++..+++.+ ..+.+|+.++.+++-.+.+ ..+.
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~ 45 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLR 45 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 4666665 444444444433 2344677777777666555 4443
No 421
>PRK06139 short chain dehydrogenase; Provisional
Probab=47.98 E-value=1.1e+02 Score=23.20 Aligned_cols=47 Identities=21% Similarity=0.260 Sum_probs=28.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hchhhc
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNVTTL 125 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~~~~ 125 (140)
.++++|=.|++.| ++..+++.+ ..+.+|+.++.+++.++.. +.+...
T Consensus 6 ~~k~vlITGAs~G-IG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~ 54 (330)
T PRK06139 6 HGAVVVITGASSG-IGQATAEAFARRGARLVLAARDEEALQAVAEECRAL 54 (330)
T ss_pred CCCEEEEcCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc
Confidence 3567777776544 344443332 3345688888888777766 555443
No 422
>PRK07478 short chain dehydrogenase; Provisional
Probab=47.83 E-value=99 Score=21.97 Aligned_cols=45 Identities=16% Similarity=0.241 Sum_probs=26.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hchhh
Q psy7827 79 GAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNVTT 124 (140)
Q Consensus 79 ~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~~~ 124 (140)
++++|=.|++.| ++..+++.+ ..+.+|+.++.+++-++.+ ..+..
T Consensus 6 ~k~~lItGas~g-iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~ 52 (254)
T PRK07478 6 GKVAIITGASSG-IGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRA 52 (254)
T ss_pred CCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 457776776544 344444333 2344688888877766666 55443
No 423
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=47.55 E-value=13 Score=28.58 Aligned_cols=32 Identities=25% Similarity=0.467 Sum_probs=25.1
Q ss_pred CCC-EEEEEcCCCChHHHHHHHHhCCCCeEEEEcCC
Q psy7827 78 PGA-KVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHI 112 (140)
Q Consensus 78 ~~~-~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s 112 (140)
.+. .++.+|.|.|+....+.+.+.+ ++|.|+-
T Consensus 244 ~g~~~~~NLG~G~G~SV~evi~a~~~---vtg~~ip 276 (329)
T COG1087 244 GGSNNIFNLGSGNGFSVLEVIEAAKK---VTGRDIP 276 (329)
T ss_pred CCceeEEEccCCCceeHHHHHHHHHH---HhCCcCc
Confidence 444 7999999999999998888755 6666653
No 424
>PRK06949 short chain dehydrogenase; Provisional
Probab=47.47 E-value=1e+02 Score=21.90 Aligned_cols=44 Identities=23% Similarity=0.263 Sum_probs=29.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhC-CCCeEEEEcCCHHHHHHH-hch
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVG-KNGSVVGVEHIPEIVNHA-SNV 122 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~-~~~~v~gvD~s~~~i~~a-~~~ 122 (140)
.++++|-.| |+|.++..+++.+. .+.+|++++.+++.++.. ..+
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l 53 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEI 53 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 467888888 56666666666553 344799998888777666 544
No 425
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=47.23 E-value=51 Score=25.76 Aligned_cols=43 Identities=16% Similarity=0.199 Sum_probs=29.5
Q ss_pred CCCEEEEEcCC-CChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hch
Q psy7827 78 PGAKVLDVGSG-SGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNV 122 (140)
Q Consensus 78 ~~~~vLDiGcG-~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~ 122 (140)
++.+|+=+|+| .|..+...+...+ .+|+.+|.+++..+.+ ..+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~~~~ 210 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLDAEF 210 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHhc
Confidence 45679999887 4555555555543 4799999998877666 443
No 426
>PRK07454 short chain dehydrogenase; Provisional
Probab=47.21 E-value=98 Score=21.75 Aligned_cols=45 Identities=11% Similarity=0.070 Sum_probs=28.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhC-CCCeEEEEcCCHHHHHHH-hchh
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVG-KNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~-~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
..+++|-.|+ +|.++..+++.+. .+.+|+.++.+++-.+.. +.+.
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 51 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELR 51 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 4457888885 5666666665542 344799999887766555 4443
No 427
>PF04189 Gcd10p: Gcd10p family; InterPro: IPR007316 eIF-3 is a multisubunit complex that stimulates translation initiation in vitro at several different steps. This family corresponds to the gamma subunit of eIF3 [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation
Probab=47.08 E-value=1e+02 Score=23.51 Aligned_cols=46 Identities=24% Similarity=0.409 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEE
Q psy7827 62 PVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGV 109 (140)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gv 109 (140)
......++.+.. +.++.++|-+=.-.|.++.+++++.+..|.++.+
T Consensus 187 ~d~la~il~~aN--V~~g~r~Lv~D~~~GLv~aav~eRmgg~G~i~~~ 232 (299)
T PF04189_consen 187 FDTLAQILSLAN--VHAGGRVLVVDDCGGLVVAAVAERMGGSGNIITL 232 (299)
T ss_pred HHHHHHHHHhcC--CCCCCeEEEEeCCCChHHHHHHHHhCCCceEEEE
Confidence 445566666666 8899999888888899999999998877776655
No 428
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=46.83 E-value=1e+02 Score=22.98 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=32.6
Q ss_pred cCCCCEEEEEcC--CCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGS--GSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGc--G~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
+.++.+||=.|. |.|..+..+++.. +.++++++.+++..+.+
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~ 179 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYL 179 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHH
Confidence 678899998884 4677777777775 34799999888877776
No 429
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=46.56 E-value=59 Score=24.92 Aligned_cols=113 Identities=11% Similarity=0.077 Sum_probs=62.3
Q ss_pred cccccccccchhhhcCC-CC-CHHHHHHHHhCCCCCCCCCCCCccccccccccCCCCcccchHHHHHHHHHHhcccCCCC
Q psy7827 3 GYKIFMVPTDYIVEIDS-IK-SPRVIDAMIHIDRGHFCAHNDSRKYMLAARDIGYGSIIDNPVQHAEVLELLKDKLVPGA 80 (140)
Q Consensus 3 ~~~~~m~~~~~l~~~~~-~~-~~~~~~a~~~~~r~~f~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (140)
+++...+| +.-..+++ +. .+++++.|+++....-.+.. .|+++..... ..++ .+..+.+.- --.|+
T Consensus 87 ~~~~~~~C-~~CeGrgi~l~~f~dll~kf~eiaK~RP~p~~---~yDQgfvTpE--ttv~---Rv~lm~~RG---DL~gK 154 (354)
T COG1568 87 KKKYDYTC-ECCEGRGISLQAFKDLLEKFREIAKDRPEPLH---QYDQGFVTPE--TTVS---RVALMYSRG---DLEGK 154 (354)
T ss_pred Cccccccc-cCcCCccccchhHHHHHHHHHHHHhcCCCcch---hccccccccc--ceee---eeeeecccc---CcCCC
Confidence 34444454 44445553 22 34577777777655444433 4555432211 1111 111111211 23677
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCC
Q psy7827 81 KVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPK 129 (140)
Q Consensus 81 ~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~ 129 (140)
.|+-+| ---..+++++-. +..-+|..|||++..++.. +-.++.|+++
T Consensus 155 ~I~vvG-DDDLtsia~aLt-~mpk~iaVvDIDERli~fi~k~aee~g~~~ 202 (354)
T COG1568 155 EIFVVG-DDDLTSIALALT-GMPKRIAVVDIDERLIKFIEKVAEELGYNN 202 (354)
T ss_pred eEEEEc-CchhhHHHHHhc-CCCceEEEEechHHHHHHHHHHHHHhCccc
Confidence 899999 444444554443 2344799999999999999 7778888763
No 430
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=46.33 E-value=65 Score=23.86 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhC-CCCeEEEEcCCHH
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVG-KNGSVVGVEHIPE 114 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~-~~~~v~gvD~s~~ 114 (140)
.+++||=.| |+|+++..+++.+- .+.+|++++.++.
T Consensus 3 ~~~~ilVtG-atGfIG~~l~~~L~~~g~~V~~~~r~~~ 39 (322)
T PLN02662 3 EGKVVCVTG-ASGYIASWLVKLLLQRGYTVKATVRDPN 39 (322)
T ss_pred CCCEEEEEC-ChHHHHHHHHHHHHHCCCEEEEEEcCCC
Confidence 456788777 47888888777653 2346887776543
No 431
>PRK06125 short chain dehydrogenase; Provisional
Probab=46.28 E-value=1.1e+02 Score=21.91 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=28.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
.++++|=.|++.| ++..+++.+ ..+.+|+.++.+++..+.+ ..+.
T Consensus 6 ~~k~vlItG~~~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~ 52 (259)
T PRK06125 6 AGKRVLITGASKG-IGAAAAEAFAAEGCHLHLVARDADALEALAADLR 52 (259)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence 4578888886544 554444433 2345799999888877666 5544
No 432
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=46.01 E-value=1e+02 Score=21.66 Aligned_cols=43 Identities=9% Similarity=0.141 Sum_probs=26.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hch
Q psy7827 79 GAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNV 122 (140)
Q Consensus 79 ~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~ 122 (140)
++++|-.|+ +|.++..+++.+ ..+.+|+.++.+++..+.. ..+
T Consensus 3 ~~~ilItGa-s~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~ 47 (250)
T TIGR03206 3 DKTAIVTGG-GGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADI 47 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHH
Confidence 567777775 455555555543 2334788888877666555 444
No 433
>PRK08589 short chain dehydrogenase; Validated
Probab=45.99 E-value=1.1e+02 Score=22.11 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hch
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNV 122 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~ 122 (140)
.++++|=.|++.|. +..+++.+ ..+.+|+.++.+ +.++.. +.+
T Consensus 5 ~~k~vlItGas~gI-G~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~ 49 (272)
T PRK08589 5 ENKVAVITGASTGI-GQASAIALAQEGAYVLAVDIA-EAVSETVDKI 49 (272)
T ss_pred CCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHH
Confidence 35567777765544 33333332 234568887777 334333 444
No 434
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=45.78 E-value=26 Score=29.35 Aligned_cols=38 Identities=13% Similarity=0.249 Sum_probs=25.6
Q ss_pred CEEEEEcCCCChHHHHHHHHhCC-CCeEEEEcCCHHHHHHH
Q psy7827 80 AKVLDVGSGSGYLTTCFAHMVGK-NGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 80 ~~vLDiGcG~G~~~~~la~~~~~-~~~v~gvD~s~~~i~~a 119 (140)
.+|+=+||| .++..+++.... +-.++.+|.+++.++.+
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~ 439 (621)
T PRK03562 401 PRVIIAGFG--RFGQIVGRLLLSSGVKMTVLDHDPDHIETL 439 (621)
T ss_pred CcEEEEecC--hHHHHHHHHHHhCCCCEEEEECCHHHHHHH
Confidence 467666655 555555554322 23699999999999888
No 435
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=45.70 E-value=65 Score=24.31 Aligned_cols=42 Identities=24% Similarity=0.308 Sum_probs=29.5
Q ss_pred cCCCCEEEEEcCC-CChHHHHHHHHhCCCCe-EEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSG-SGYLTTCFAHMVGKNGS-VVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~~-v~gvD~s~~~i~~a 119 (140)
+.++.+||=.||| .|..+..+++.. +.+ +++++.+++..+.+
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~--G~~~v~~~~~~~~~~~~~ 201 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVAL--GAKSVTAIDINSEKLALA 201 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHH
Confidence 5678899999875 344445556654 334 78999999888776
No 436
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=45.35 E-value=40 Score=28.84 Aligned_cols=40 Identities=10% Similarity=-0.005 Sum_probs=28.3
Q ss_pred CEEEEEcCCCCh--HHHHHHHHhCCCCeEEEEcCCHHHHHHH-hch
Q psy7827 80 AKVLDVGSGSGY--LTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNV 122 (140)
Q Consensus 80 ~~vLDiGcG~G~--~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~ 122 (140)
.+|.-||+|+=. ++..++..+ ..|+-+|.+++.++.+ .++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G---~~V~l~d~~~~~l~~~~~~~ 356 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKG---VPVIMKDINQKALDLGMTEA 356 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHH
Confidence 478899999733 333344443 3599999999999887 654
No 437
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=44.89 E-value=66 Score=23.89 Aligned_cols=42 Identities=33% Similarity=0.438 Sum_probs=29.6
Q ss_pred cCCCCEEEEEcCC-CChHHHHHHHHhCCCCe-EEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSG-SGYLTTCFAHMVGKNGS-VVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~~-v~gvD~s~~~i~~a 119 (140)
+.++.+||-+|+| .|..+..+++..+ .+ ++.++.+++..+.+
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~G--~~~v~~~~~~~~~~~~~ 200 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLNG--ASRVTVAEPNEEKLELA 200 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHH
Confidence 5678899999865 2455555666543 34 88899998887765
No 438
>PRK08251 short chain dehydrogenase; Provisional
Probab=44.79 E-value=1.1e+02 Score=21.58 Aligned_cols=42 Identities=17% Similarity=0.178 Sum_probs=25.4
Q ss_pred CEEEEEcCCCChHHHHHHHHhC-CCCeEEEEcCCHHHHHHH-hch
Q psy7827 80 AKVLDVGSGSGYLTTCFAHMVG-KNGSVVGVEHIPEIVNHA-SNV 122 (140)
Q Consensus 80 ~~vLDiGcG~G~~~~~la~~~~-~~~~v~gvD~s~~~i~~a-~~~ 122 (140)
+++|-.|+ +|.++..+++.+. .+.+|+.++.+++..+.. ..+
T Consensus 3 k~vlItGa-s~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~ 46 (248)
T PRK08251 3 QKILITGA-SSGLGAGMAREFAAKGRDLALCARRTDRLEELKAEL 46 (248)
T ss_pred CEEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 46777774 5566665555442 234688888777766655 443
No 439
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=44.72 E-value=74 Score=23.76 Aligned_cols=43 Identities=28% Similarity=0.546 Sum_probs=29.6
Q ss_pred cCCCCEEEEEcCC-CChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSG-SGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
+.++.+||-.|+| .|..+..+++..+. ..+++++.++...+.+
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~-~~v~~~~~~~~~~~~~ 208 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGA-ARIIAVDSNPERLDLA 208 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHH
Confidence 5678888887765 35566667776531 3688888887776655
No 440
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=44.71 E-value=1.1e+02 Score=21.52 Aligned_cols=44 Identities=14% Similarity=0.199 Sum_probs=27.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hch
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNV 122 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~ 122 (140)
.++++|=.|+. |.++..+++.+ ..+.+|++++.+++-.+.. ..+
T Consensus 4 ~~~~vlItGas-g~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~ 49 (251)
T PRK07231 4 EGKVAIVTGAS-SGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEI 49 (251)
T ss_pred CCcEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 35677777755 44444444433 2345799999988776665 544
No 441
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=44.51 E-value=45 Score=25.67 Aligned_cols=35 Identities=23% Similarity=0.204 Sum_probs=26.7
Q ss_pred CEEEEEcCCCChHHHHHHHHhC-------------------CCCeEEEEcCCHH
Q psy7827 80 AKVLDVGSGSGYLTTCFAHMVG-------------------KNGSVVGVEHIPE 114 (140)
Q Consensus 80 ~~vLDiGcG~G~~~~~la~~~~-------------------~~~~v~gvD~s~~ 114 (140)
.+||-||-|-|.-..+++.... +..+++.||+.+-
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdW 141 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADW 141 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecCh
Confidence 5999999999988877777660 1137999998763
No 442
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=44.32 E-value=38 Score=27.48 Aligned_cols=39 Identities=21% Similarity=0.040 Sum_probs=24.7
Q ss_pred CEEEEEcCCCChHHHH--HHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 80 AKVLDVGSGSGYLTTC--FAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 80 ~~vLDiGcG~G~~~~~--la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
++|.-+|+|...+... +++. +.+.+|+++|++++-++..
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~-g~g~~V~gvD~~~~~v~~l 42 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALK-CPDIEVVVVDISVPRIDAW 42 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHH
Confidence 4577776664444333 2222 1234699999999999886
No 443
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=44.15 E-value=48 Score=25.41 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=26.8
Q ss_pred cCCCCEEEEEcCC-CChHHHHHHHHhCCCCeEEEEcCCHHHHH
Q psy7827 76 LVPGAKVLDVGSG-SGYLTTCFAHMVGKNGSVVGVEHIPEIVN 117 (140)
Q Consensus 76 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~~v~gvD~s~~~i~ 117 (140)
+.++++||-.|+| .|.++..+++.. +.++++++.+++...
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~ 221 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKED 221 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhh
Confidence 4578888888885 455556666665 346888887765443
No 444
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=44.05 E-value=55 Score=26.16 Aligned_cols=36 Identities=31% Similarity=0.444 Sum_probs=22.9
Q ss_pred EEEEEcCCC-ChHH-HHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 81 KVLDVGSGS-GYLT-TCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 81 ~vLDiGcG~-G~~~-~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
+|--+|+|. |..+ ..+++.++ +|+++|+++.-++..
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GH---eVv~vDid~~KV~~l 39 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGH---EVVCVDIDESKVELL 39 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCC---eEEEEeCCHHHHHHH
Confidence 455566552 3222 33455543 499999999998877
No 445
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=44.02 E-value=47 Score=25.50 Aligned_cols=40 Identities=20% Similarity=0.098 Sum_probs=25.7
Q ss_pred CEEEEEcCCCC--hHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hch
Q psy7827 80 AKVLDVGSGSG--YLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNV 122 (140)
Q Consensus 80 ~~vLDiGcG~G--~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~ 122 (140)
.+|--||+|+= .++..++.. +.+|+..|++++.++.+ ..+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a---G~~V~l~D~~~~~~~~~~~~i 50 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH---GLDVVAWDPAPGAEAALRANV 50 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC---CCeEEEEeCCHHHHHHHHHHH
Confidence 57888888732 233333433 33699999999988776 543
No 446
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=43.64 E-value=91 Score=23.40 Aligned_cols=42 Identities=24% Similarity=0.202 Sum_probs=32.3
Q ss_pred cCCCCEEEEEcC--CCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGS--GSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGc--G~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
+.++++||=.|+ |.|..+..+++.. +.++++++.+++..+.+
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~ 192 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLL 192 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHH
Confidence 678899999986 4666777777775 44799999888877776
No 447
>PF11387 DUF2795: Protein of unknown function (DUF2795); InterPro: IPR021527 This family of proteins has no known function.
Probab=43.62 E-value=27 Score=18.44 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=19.9
Q ss_pred hhhhcCCCCCHHHHHHHHhCCCCCCCCC
Q psy7827 13 YIVEIDSIKSPRVIDAMIHIDRGHFCAH 40 (140)
Q Consensus 13 ~l~~~~~~~~~~~~~a~~~~~r~~f~~~ 40 (140)
+.+.++. ...+.+++..+|...|...
T Consensus 16 ~A~~~gA--~~~vl~~L~~lP~~~Y~s~ 41 (44)
T PF11387_consen 16 HARRNGA--PDDVLDALERLPDREYESP 41 (44)
T ss_pred HHHHcCC--CHHHHHHHHHCCccCCCCc
Confidence 5666664 6689999999998777653
No 448
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=43.31 E-value=20 Score=27.14 Aligned_cols=36 Identities=28% Similarity=0.369 Sum_probs=29.8
Q ss_pred ccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCH
Q psy7827 75 KLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIP 113 (140)
Q Consensus 75 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~ 113 (140)
.+.+++...|+|.-.|..|-.|.++. -.|++||.-+
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr~---m~V~aVDng~ 243 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKRN---MRVYAVDNGP 243 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhcc---eEEEEeccch
Confidence 46789999999999999998887763 3599999654
No 449
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=43.30 E-value=14 Score=27.75 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=34.4
Q ss_pred HHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 70 ELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 70 ~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
..+.++++.+.+.+|--||.|...+.+... .. ++.-|++++++..-
T Consensus 17 ~~i~~~lP~~~~y~EPF~GggaV~i~~~~~-~~---~i~~Din~~Lvn~y 62 (274)
T COG0338 17 DQIIPHLPEGVSYIEPFVGGGAVFINLAAK-KK---YILNDINPDLVNLY 62 (274)
T ss_pred HHHHHhCCCCceeeCCccCcceeeeehhhh-hh---hhHhcCCHHHHHHH
Confidence 333333455559999999999999988775 23 88899999998654
No 450
>PRK07576 short chain dehydrogenase; Provisional
Probab=43.17 E-value=1.2e+02 Score=21.78 Aligned_cols=45 Identities=22% Similarity=0.308 Sum_probs=28.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhC-CCCeEEEEcCCHHHHHHH-hchh
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVG-KNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~-~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
+++++|-.| |+|.++..+++.+. .+.+|+.++.+++-++.. +.+.
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 54 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQ 54 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 466788777 45566655555442 345799999887766555 4443
No 451
>PRK08643 acetoin reductase; Validated
Probab=42.92 E-value=1.2e+02 Score=21.52 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=23.3
Q ss_pred CEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 80 AKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 80 ~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
+++|=.|+. |.++..+++.+ ..+.+|+.++.+++..+.. ..+.
T Consensus 3 k~~lItGas-~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~ 47 (256)
T PRK08643 3 KVALVTGAG-QGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLS 47 (256)
T ss_pred CEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 456666644 44444444433 2334677777777666555 4443
No 452
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=42.76 E-value=1e+02 Score=22.03 Aligned_cols=41 Identities=22% Similarity=0.281 Sum_probs=24.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a 119 (140)
+++++|-.|++.|. +..+++.+ ..+.+|+.++.+++.++..
T Consensus 5 ~~k~vlVtGas~gI-G~~ia~~l~~~G~~V~~~~r~~~~~~~~ 46 (263)
T PRK06200 5 HGQVALITGGGSGI-GRALVERFLAEGARVAVLERSAEKLASL 46 (263)
T ss_pred CCCEEEEeCCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 45678888865444 44444433 2345688888877666554
No 453
>PRK06153 hypothetical protein; Provisional
Probab=42.61 E-value=46 Score=26.46 Aligned_cols=34 Identities=12% Similarity=0.116 Sum_probs=23.3
Q ss_pred CCCEEEEEcCC-CChHHHHHHHHhCCCCeEEEEcCC
Q psy7827 78 PGAKVLDVGSG-SGYLTTCFAHMVGKNGSVVGVEHI 112 (140)
Q Consensus 78 ~~~~vLDiGcG-~G~~~~~la~~~~~~~~v~gvD~s 112 (140)
.+.+|+=+||| +|......+.+.+ -++++-+|.+
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~LAR~G-VgeI~LVD~D 209 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDLVAKTP-VREIHLFDGD 209 (393)
T ss_pred hhCcEEEEcCCccHHHHHHHHHHcC-CCEEEEECCC
Confidence 46799999997 6665544444433 3579999865
No 454
>PRK09072 short chain dehydrogenase; Provisional
Probab=42.23 E-value=1.3e+02 Score=21.58 Aligned_cols=44 Identities=16% Similarity=0.263 Sum_probs=27.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hch
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNV 122 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~ 122 (140)
++.++|=.|++.| ++..+++.+ ..+.+|+.++.+++.++.. ..+
T Consensus 4 ~~~~vlItG~s~~-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 49 (263)
T PRK09072 4 KDKRVLLTGASGG-IGQALAEALAAAGARLLLVGRNAEKLEALAARL 49 (263)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 3567888886654 444444332 3445799999888776666 443
No 455
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=41.59 E-value=86 Score=22.69 Aligned_cols=42 Identities=29% Similarity=0.437 Sum_probs=30.2
Q ss_pred cCCCCEEEEEcC--CCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGS--GSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGc--G~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
+.++..++-.|| +.|..+..+++.. +.+++.++.+++..+.+
T Consensus 137 ~~~~~~vli~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~ 180 (323)
T cd08241 137 LQPGETVLVLGAAGGVGLAAVQLAKAL--GARVIAAASSEEKLALA 180 (323)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHh--CCEEEEEeCCHHHHHHH
Confidence 567889999998 3555555566664 34699999888777665
No 456
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.58 E-value=1.2e+02 Score=21.22 Aligned_cols=44 Identities=16% Similarity=0.123 Sum_probs=28.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 79 GAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 79 ~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
+.++|-.|+ +|.++..+++.+ ..+.+|+.++.++...+.. ..+.
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~ 52 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVE 52 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 457777884 666776666543 3445788888887665555 4443
No 457
>PRK06197 short chain dehydrogenase; Provisional
Probab=41.06 E-value=1.5e+02 Score=21.96 Aligned_cols=45 Identities=20% Similarity=0.098 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhC-CCCeEEEEcCCHHHHHHH-hchh
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVG-KNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~-~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
.++++|=.|+ +|.++..+++.+. .+.+|+.++.+++..+.+ +.+.
T Consensus 15 ~~k~vlItGa-s~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~ 61 (306)
T PRK06197 15 SGRVAVVTGA-NTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARIT 61 (306)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 4567887775 4455555555432 344788888877766655 5443
No 458
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=41.02 E-value=85 Score=23.58 Aligned_cols=42 Identities=36% Similarity=0.548 Sum_probs=29.6
Q ss_pred cCCCCEEEEEcCCC-ChHHHHHHHHhCCCCe-EEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSGS-GYLTTCFAHMVGKNGS-VVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~~-v~gvD~s~~~i~~a 119 (140)
+.++.+||-.|+|. |..+..+++..+ .+ +++++.+++..+.+
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G--~~~v~~~~~~~~~~~~~ 203 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFG--ATKVVVTDIDPSRLEFA 203 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHH
Confidence 67888888887754 556666666643 35 88888887776665
No 459
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=41.01 E-value=58 Score=23.48 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=24.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC-CeEEEEcCCHHHHHHH
Q psy7827 81 KVLDVGSGSGYLTTCFAHMVGKN-GSVVGVEHIPEIVNHA 119 (140)
Q Consensus 81 ~vLDiGcG~G~~~~~la~~~~~~-~~v~gvD~s~~~i~~a 119 (140)
+++=+||| .++..+++.+... -.|+.||.+++.++..
T Consensus 2 ~iiIiG~G--~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~ 39 (225)
T COG0569 2 KIIIIGAG--RVGRSVARELSEEGHNVVLIDRDEERVEEF 39 (225)
T ss_pred EEEEECCc--HHHHHHHHHHHhCCCceEEEEcCHHHHHHH
Confidence 45556655 5555555554333 2599999999998884
No 460
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=40.74 E-value=21 Score=26.31 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=18.1
Q ss_pred cCCCChHHHHHHHHhCCC-CeEEEEcCCHHHH
Q psy7827 86 GSGSGYLTTCFAHMVGKN-GSVVGVEHIPEIV 116 (140)
Q Consensus 86 GcG~G~~~~~la~~~~~~-~~v~gvD~s~~~i 116 (140)
|+|+=.++..|+...... -+|++||.+|.-.
T Consensus 12 GvG~TTltAnLA~aL~~~G~~VlaID~dpqN~ 43 (243)
T PF06564_consen 12 GVGKTTLTANLAWALARLGESVLAIDLDPQNL 43 (243)
T ss_pred CCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHH
Confidence 455445555555443222 2599999997543
No 461
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=40.62 E-value=1.1e+02 Score=22.53 Aligned_cols=42 Identities=21% Similarity=0.238 Sum_probs=31.8
Q ss_pred cCCCCEEEEEcC--CCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGS--GSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGc--G~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
+.++.+||=.|. |.|..+..+++.. +.++++++.+++..+.+
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l 184 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWL 184 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHH
Confidence 678889988884 4666777777775 34799999888877766
No 462
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=40.58 E-value=1e+02 Score=22.00 Aligned_cols=38 Identities=26% Similarity=0.208 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH
Q psy7827 81 KVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 81 ~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a 119 (140)
++|=.|++.| ++..+++.+ ..+.+|+.++.+++.++.+
T Consensus 2 ~vlItGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~ 40 (259)
T PRK08340 2 NVLVTASSRG-IGFNVARELLKKGARVVISSRNEENLEKA 40 (259)
T ss_pred eEEEEcCCcH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 4555564433 333333332 2234566666666555544
No 463
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=40.57 E-value=56 Score=27.95 Aligned_cols=42 Identities=24% Similarity=0.070 Sum_probs=28.5
Q ss_pred CEEEEEcCCCCh--HHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 80 AKVLDVGSGSGY--LTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 80 ~~vLDiGcG~G~--~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
.+|.-||+|+=. ++..++... +..|+-+|.+++.++.+ .++.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~--G~~V~l~d~~~~~l~~~~~~~~ 354 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKA--GLPVRIKDINPQGINHALKYSW 354 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHH
Confidence 578999998733 333344221 23599999999998887 6553
No 464
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=40.53 E-value=1.1e+02 Score=22.85 Aligned_cols=42 Identities=24% Similarity=0.252 Sum_probs=29.5
Q ss_pred cCCCCEEEEEcCC-CChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSG-SGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
+.++.+||=.||| .|..+..+++.. +.+++.++.+++..+.+
T Consensus 161 ~~~~~~vlV~g~g~iG~~~~~~a~~~--G~~vi~~~~~~~~~~~~ 203 (333)
T cd08296 161 AKPGDLVAVQGIGGLGHLAVQYAAKM--GFRTVAISRGSDKADLA 203 (333)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCChHHHHHH
Confidence 6678899999854 344445555554 34699999998877776
No 465
>PRK05875 short chain dehydrogenase; Provisional
Probab=40.48 E-value=1.4e+02 Score=21.53 Aligned_cols=41 Identities=20% Similarity=0.193 Sum_probs=26.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a 119 (140)
.++++|-.|++ |.++..+++.+ ..+.+|++++.+++..+..
T Consensus 6 ~~k~vlItGas-g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~ 47 (276)
T PRK05875 6 QDRTYLVTGGG-SGIGKGVAAGLVAAGAAVMIVGRNPDKLAAA 47 (276)
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 35688888854 44555555543 2344788888887665544
No 466
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=40.44 E-value=84 Score=19.04 Aligned_cols=47 Identities=13% Similarity=0.192 Sum_probs=27.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH----hchhhcCC
Q psy7827 81 KVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA----SNVTTLHY 127 (140)
Q Consensus 81 ~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a----~~~~~~~~ 127 (140)
-|+|+-.|+|...+.+.+.....+-++-.-+++-++..+ .-+++.++
T Consensus 4 LiiD~PPGTgD~~l~~~~~~~~~g~ivVTTPq~la~~dv~r~~~~~~~~~v 54 (81)
T PF10609_consen 4 LIIDLPPGTGDEHLTLMQYLPIDGAIVVTTPQELALADVRRAIDMFRKLNV 54 (81)
T ss_dssp EEEE--SCSSSHHHHHHHHH--SEEEEEE-CCC--HHHHHHHHHHHHCTT-
T ss_pred EEEeCCCCCCcHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhcCC
Confidence 489999999999999999986555565555665555444 33444444
No 467
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=40.35 E-value=40 Score=26.77 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=23.6
Q ss_pred CEEEEEcCCCChHHHHHHHHhC-CCCeEEEEcCCHHHHHHH
Q psy7827 80 AKVLDVGSGSGYLTTCFAHMVG-KNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 80 ~~vLDiGcG~G~~~~~la~~~~-~~~~v~gvD~s~~~i~~a 119 (140)
++|.=||.|. .+..++..+. .+.+|+++|++++.++..
T Consensus 4 ~kI~VIGlG~--~G~~~A~~La~~G~~V~~~D~~~~~v~~l 42 (415)
T PRK11064 4 ETISVIGLGY--IGLPTAAAFASRQKQVIGVDINQHAVDTI 42 (415)
T ss_pred cEEEEECcch--hhHHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence 4566777664 3333333321 224699999999988864
No 468
>PRK12939 short chain dehydrogenase; Provisional
Probab=40.09 E-value=1.3e+02 Score=21.10 Aligned_cols=45 Identities=16% Similarity=0.235 Sum_probs=27.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhC-CCCeEEEEcCCHHHHHHH-hchh
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVG-KNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~-~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
+++++|=.|+ +|.++..+++.+. .+.+++.++.+++.++.. +.+.
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~ 52 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALE 52 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence 3567776664 5666666665543 334688888887766655 4443
No 469
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=39.61 E-value=1.6e+02 Score=22.34 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=28.3
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhC-CCCeEEEEcCCHHHHH
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVG-KNGSVVGVEHIPEIVN 117 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~~v~gvD~s~~~i~ 117 (140)
+.+++||=.| |+|+++..+++.+. .+.+|++++.++....
T Consensus 8 ~~~~~vLVtG-~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~ 48 (353)
T PLN02896 8 SATGTYCVTG-ATGYIGSWLVKLLLQRGYTVHATLRDPAKSL 48 (353)
T ss_pred cCCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChHHHH
Confidence 4677899888 57888888877653 3347888877665433
No 470
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=39.42 E-value=2.2e+02 Score=24.02 Aligned_cols=46 Identities=9% Similarity=-0.031 Sum_probs=31.4
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hch
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNV 122 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~ 122 (140)
.+.+++||-.|+ +|.++..+++.+ ..+.+|++++.+.+.++.. ..+
T Consensus 77 ~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l 124 (576)
T PLN03209 77 TKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSV 124 (576)
T ss_pred cCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Confidence 446777887775 577777776654 3445799999988877655 544
No 471
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=39.37 E-value=1.4e+02 Score=21.21 Aligned_cols=45 Identities=16% Similarity=0.146 Sum_probs=27.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hchh
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
.++++|=.|.+ |.++..+++.+ ..+.+++.++.+++.++.. ..+.
T Consensus 8 ~~k~~lItGas-~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~ 54 (254)
T PRK08085 8 AGKNILITGSA-QGIGFLLATGLAEYGAEIIINDITAERAELAVAKLR 54 (254)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHH
Confidence 45677777744 45555554443 2345788888887766665 5544
No 472
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=39.23 E-value=67 Score=25.80 Aligned_cols=41 Identities=22% Similarity=0.169 Sum_probs=27.3
Q ss_pred CCCCEEEEEcCCC-ChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 77 VPGAKVLDVGSGS-GYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 77 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
..+++|+=+|+|. |......++.. +.+|+.+|+++.....+
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~--Ga~ViV~d~dp~ra~~A 251 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGL--GARVIVTEVDPICALQA 251 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCchhhHHH
Confidence 3788999999973 33333333333 44799999998765444
No 473
>KOG2918|consensus
Probab=39.05 E-value=1.1e+02 Score=23.79 Aligned_cols=43 Identities=9% Similarity=0.074 Sum_probs=31.4
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHhC-CCCeEEEEcCCHHHHHHH
Q psy7827 77 VPGAKVLDVGSGSGYLTTCFAHMVG-KNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 77 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~~v~gvD~s~~~i~~a 119 (140)
.....|+.+|||.-.+...|..... ....++=||.++.....+
T Consensus 86 ~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi 129 (335)
T KOG2918|consen 86 DGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKI 129 (335)
T ss_pred CCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHH
Confidence 4456899999999999888877752 344677778777665555
No 474
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=38.91 E-value=1e+02 Score=23.22 Aligned_cols=43 Identities=28% Similarity=0.422 Sum_probs=30.2
Q ss_pred cCCCCEEEEEcCC-CChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSG-SGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
++++.+||-.|+| .|..+..+++..+. ..++++|.+++..+.+
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~-~~v~~~~~~~~~~~~~ 207 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGA-GRIIAVGSRPNRVELA 207 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHH
Confidence 6778899888875 44555556666432 2589999998877776
No 475
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=38.86 E-value=1.2e+02 Score=22.67 Aligned_cols=42 Identities=24% Similarity=0.433 Sum_probs=29.5
Q ss_pred cCCCCEEEEEcCCC-ChHHHHHHHHhCCCCe-EEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSGS-GYLTTCFAHMVGKNGS-VVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~~-v~gvD~s~~~i~~a 119 (140)
+.++.+||-.|+|. |..+..+++.. +.+ +++++.++...+.+
T Consensus 157 ~~~~~~vlI~g~g~~g~~~~~lA~~~--G~~~v~~~~~~~~~~~~l 200 (343)
T cd08236 157 ITLGDTVVVIGAGTIGLLAIQWLKIL--GAKRVIAVDIDDEKLAVA 200 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHH
Confidence 56788999998654 55666666664 334 89988887776655
No 476
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=38.67 E-value=84 Score=24.76 Aligned_cols=37 Identities=22% Similarity=0.290 Sum_probs=27.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCC-CCeEEEEcCCHHHHHHH
Q psy7827 81 KVLDVGSGSGYLTTCFAHMVGK-NGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 81 ~vLDiGcG~G~~~~~la~~~~~-~~~v~gvD~s~~~i~~a 119 (140)
+|+=+|| |.++..+++.... +..++.+|.+++.++.+
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~ 39 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRL 39 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHH
Confidence 4566665 8888888886533 34799999999988776
No 477
>PLN02427 UDP-apiose/xylose synthase
Probab=38.66 E-value=73 Score=24.55 Aligned_cols=38 Identities=8% Similarity=0.259 Sum_probs=27.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhCCC--CeEEEEcCCHHHH
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMVGKN--GSVVGVEHIPEIV 116 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~i 116 (140)
..++||=.| |+|+++..+++.+-.. .+|+++|.++..+
T Consensus 13 ~~~~VlVTG-gtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~ 52 (386)
T PLN02427 13 KPLTICMIG-AGGFIGSHLCEKLMTETPHKVLALDVYNDKI 52 (386)
T ss_pred cCcEEEEEC-CcchHHHHHHHHHHhcCCCEEEEEecCchhh
Confidence 456888777 7899999888866432 4799999765443
No 478
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=38.54 E-value=63 Score=24.05 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=24.0
Q ss_pred CEEEEEcCCCChHHHHHHHHhC-CCCeEEEEcCCHHHHHHH
Q psy7827 80 AKVLDVGSGSGYLTTCFAHMVG-KNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 80 ~~vLDiGcG~G~~~~~la~~~~-~~~~v~gvD~s~~~i~~a 119 (140)
.+|.=||+| ..+..++..+. .+.+|+.+|.+++.++.+
T Consensus 5 ~~V~vIG~G--~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 43 (295)
T PLN02545 5 KKVGVVGAG--QMGSGIAQLAAAAGMDVWLLDSDPAALSRG 43 (295)
T ss_pred CEEEEECCC--HHHHHHHHHHHhcCCeEEEEeCCHHHHHHH
Confidence 457777765 34434433321 233699999999998765
No 479
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.35 E-value=87 Score=25.36 Aligned_cols=42 Identities=24% Similarity=0.352 Sum_probs=28.0
Q ss_pred cCCCCEEEEEcCC-CChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSG-SGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
+.++++|+=+|.| +|..+..++... +.+|++.|..+..++.+
T Consensus 9 ~~~~~~v~V~G~G~sG~aa~~~L~~~--G~~v~~~D~~~~~~~~l 51 (488)
T PRK03369 9 LLPGAPVLVAGAGVTGRAVLAALTRF--GARPTVCDDDPDALRPH 51 (488)
T ss_pred ccCCCeEEEEcCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHH
Confidence 4467899999988 444444444443 45799999877655444
No 480
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=38.12 E-value=1.4e+02 Score=21.00 Aligned_cols=44 Identities=18% Similarity=0.143 Sum_probs=28.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHhC-CCCeEEEEcCCHHHHHHH-hchh
Q psy7827 79 GAKVLDVGSGSGYLTTCFAHMVG-KNGSVVGVEHIPEIVNHA-SNVT 123 (140)
Q Consensus 79 ~~~vLDiGcG~G~~~~~la~~~~-~~~~v~gvD~s~~~i~~a-~~~~ 123 (140)
++++|=.| |+|.++..+++.+. .+.+|++++.+++..+.. ..+.
T Consensus 4 ~~~vlItG-~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~ 49 (258)
T PRK12429 4 GKVALVTG-AASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQ 49 (258)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHH
Confidence 45677666 46677777766543 344788888888776666 5443
No 481
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=38.09 E-value=92 Score=23.11 Aligned_cols=40 Identities=18% Similarity=0.005 Sum_probs=25.6
Q ss_pred CEEEEEcCCCChHH--HHHHHHhCCCCeEEEEcCCHHHHHHH-hch
Q psy7827 80 AKVLDVGSGSGYLT--TCFAHMVGKNGSVVGVEHIPEIVNHA-SNV 122 (140)
Q Consensus 80 ~~vLDiGcG~G~~~--~~la~~~~~~~~v~gvD~s~~~i~~a-~~~ 122 (140)
.+|.=||+|.-..+ ..++.. +.+|+.+|.+++.++.+ +++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~---G~~V~l~d~~~~~l~~~~~~~ 46 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH---GFDVTIYDISDEALEKAKERI 46 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHH
Confidence 36777887643322 223333 23699999999988887 653
No 482
>PRK09186 flagellin modification protein A; Provisional
Probab=37.93 E-value=1.4e+02 Score=21.02 Aligned_cols=44 Identities=20% Similarity=0.428 Sum_probs=25.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH-hch
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA-SNV 122 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a-~~~ 122 (140)
.++++|=.|++ |.++..+++.+ ..+.+|+.++.+++.++.+ +.+
T Consensus 3 ~~k~vlItGas-~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l 48 (256)
T PRK09186 3 KGKTILITGAG-GLIGSALVKAILEAGGIVIAADIDKEALNELLESL 48 (256)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHH
Confidence 35677777754 44454444443 2334677777777666555 444
No 483
>PLN02650 dihydroflavonol-4-reductase
Probab=37.63 E-value=1.2e+02 Score=22.88 Aligned_cols=38 Identities=18% Similarity=0.200 Sum_probs=24.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHhCC-CCeEEEEcCCHHHHH
Q psy7827 79 GAKVLDVGSGSGYLTTCFAHMVGK-NGSVVGVEHIPEIVN 117 (140)
Q Consensus 79 ~~~vLDiGcG~G~~~~~la~~~~~-~~~v~gvD~s~~~i~ 117 (140)
.++||-.| |+|+++..+++.+-. +.+|++++.++....
T Consensus 5 ~k~iLVTG-atGfIGs~l~~~L~~~G~~V~~~~r~~~~~~ 43 (351)
T PLN02650 5 KETVCVTG-ASGFIGSWLVMRLLERGYTVRATVRDPANVK 43 (351)
T ss_pred CCEEEEeC-CcHHHHHHHHHHHHHCCCEEEEEEcCcchhH
Confidence 34666555 788888888776532 346887776654433
No 484
>KOG1562|consensus
Probab=36.92 E-value=66 Score=24.79 Aligned_cols=62 Identities=19% Similarity=0.196 Sum_probs=46.4
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEee
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFIC 138 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~~ 138 (140)
+.+.+++|-||=|-|......++. ..-+++.-+|++...++.. +.++..-...-..+|.+.-
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~i 181 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLI 181 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEe
Confidence 467889999999999998877766 3445699999999999999 8777543322255666543
No 485
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=36.87 E-value=67 Score=23.87 Aligned_cols=31 Identities=13% Similarity=0.257 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCCeEEEEcCC
Q psy7827 81 KVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHI 112 (140)
Q Consensus 81 ~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s 112 (140)
+||=.| |+|.++..+.+.+...++|+++|..
T Consensus 2 ~iLVtG-~~GfiGs~l~~~L~~~g~V~~~~~~ 32 (299)
T PRK09987 2 NILLFG-KTGQVGWELQRALAPLGNLIALDVH 32 (299)
T ss_pred eEEEEC-CCCHHHHHHHHHhhccCCEEEeccc
Confidence 566666 6788888877765444467777754
No 486
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=36.70 E-value=58 Score=24.49 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=23.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCC-CCeEEEEcCCHHHHHHH
Q psy7827 81 KVLDVGSGSGYLTTCFAHMVGK-NGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 81 ~vLDiGcG~G~~~~~la~~~~~-~~~v~gvD~s~~~i~~a 119 (140)
+|.=||+| ..+..++..+.. +.+|+.+|.+++.++.+
T Consensus 4 ~V~VIG~G--~mG~~iA~~la~~G~~V~v~d~~~~~~~~~ 41 (308)
T PRK06129 4 SVAIIGAG--LIGRAWAIVFARAGHEVRLWDADPAAAAAA 41 (308)
T ss_pred EEEEECcc--HHHHHHHHHHHHCCCeeEEEeCCHHHHHHH
Confidence 56777755 444444433321 23699999999888776
No 487
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=36.62 E-value=67 Score=23.75 Aligned_cols=48 Identities=10% Similarity=-0.015 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcccCCCCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 64 QHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 64 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
+...+.+.+. ....+.+|.-||.|..++.+.. ..++.-|++++.+..=
T Consensus 14 l~~~i~~~~p---~~~~~yvEPF~Gggsv~l~~~~-----~~~~lND~n~~Li~~~ 61 (266)
T TIGR00571 14 LLPEIKKHLP---KNFNCLVEPFVGGGAVFFNLNP-----KRYLLNDINEDLINLY 61 (266)
T ss_pred HHHHHHHhcC---cccCEEEEecCCcchhheeecC-----cEEEEecCCHHHHHHH
Confidence 4455555542 2246899999999999886532 2377789999998544
No 488
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=36.55 E-value=1.2e+02 Score=23.08 Aligned_cols=43 Identities=21% Similarity=0.406 Sum_probs=30.2
Q ss_pred cCCCCEEEEEcCCC-ChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSGS-GYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
+.++++||-.|+|. |..+..+++..+. ..++++|.++...+.+
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~-~~v~~~~~~~~k~~~~ 227 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGC-TTIIAVDIVDSRLELA 227 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHH
Confidence 56788888888752 5555666666532 2599999998877765
No 489
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=36.53 E-value=1.5e+02 Score=20.83 Aligned_cols=38 Identities=16% Similarity=0.059 Sum_probs=23.8
Q ss_pred EEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH
Q psy7827 81 KVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 81 ~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a 119 (140)
++|=.| |+|.++..+++.+ ..+.+|++++.+++..+..
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~ 41 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAA 41 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 556666 5566666666554 2344688888877665555
No 490
>PRK05872 short chain dehydrogenase; Provisional
Probab=36.38 E-value=1.4e+02 Score=21.99 Aligned_cols=41 Identities=12% Similarity=0.124 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH
Q psy7827 78 PGAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 78 ~~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a 119 (140)
.++++|-.|++. .++..+++.+ ..+.+|+.++.+++.++..
T Consensus 8 ~gk~vlItGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~ 49 (296)
T PRK05872 8 AGKVVVVTGAAR-GIGAELARRLHARGAKLALVDLEEAELAAL 49 (296)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 456777777544 3444444433 2344677778777766555
No 491
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=36.33 E-value=1e+02 Score=20.04 Aligned_cols=46 Identities=17% Similarity=0.147 Sum_probs=31.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH-hchhhcCCCCCCCcEEEe
Q psy7827 79 GAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKFI 137 (140)
Q Consensus 79 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a-~~~~~~~~~~~~~~i~~~ 137 (140)
-+-|+-+||..|.. .. ..|-......++.+ +.+...|++ .+||++.
T Consensus 53 ADGV~V~gC~~g~C--------h~---~~Gn~~a~~Rv~~~k~~L~~~Gi~--~eRv~~~ 99 (124)
T PF02662_consen 53 ADGVLVAGCHPGDC--------HY---REGNYRAEKRVERLKKLLEELGIE--PERVRLY 99 (124)
T ss_pred CCEEEEeCCCCCCC--------Cc---chhhHHHHHHHHHHHHHHHHcCCC--hhHeEEE
Confidence 35688888888772 12 45555666777777 777888886 6788774
No 492
>PRK06720 hypothetical protein; Provisional
Probab=36.20 E-value=1.4e+02 Score=20.36 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=17.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 79 GAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 79 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
++.+|-.|.+.|.-..........+.+|+.+|.+++.++.+
T Consensus 16 gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~ 56 (169)
T PRK06720 16 GKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQAT 56 (169)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 44555555444332222111222234566666655544443
No 493
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=36.20 E-value=1.5e+02 Score=20.82 Aligned_cols=33 Identities=27% Similarity=0.300 Sum_probs=21.5
Q ss_pred CCCEEEEEcCC-CChHH-HHHHHHhCCCCeEEEEcCC
Q psy7827 78 PGAKVLDVGSG-SGYLT-TCFAHMVGKNGSVVGVEHI 112 (140)
Q Consensus 78 ~~~~vLDiGcG-~G~~~-~~la~~~~~~~~v~gvD~s 112 (140)
...+|+=+||| .|... ..|+..+ -++++-+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~G--v~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAG--VGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcC--CCeEEEecCC
Confidence 46789999998 34433 3334432 2469999977
No 494
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=35.96 E-value=77 Score=23.74 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=25.1
Q ss_pred CEEEEEcCCCChHHHHHHHHhC-CCCeEEEEcCCHHHHHHH-hc
Q psy7827 80 AKVLDVGSGSGYLTTCFAHMVG-KNGSVVGVEHIPEIVNHA-SN 121 (140)
Q Consensus 80 ~~vLDiGcG~G~~~~~la~~~~-~~~~v~gvD~s~~~i~~a-~~ 121 (140)
.+|.=||+|. .+..++..+. .+.+|+.+|.+++.++.+ +.
T Consensus 5 ~~I~vIGaG~--mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~ 46 (311)
T PRK06130 5 QNLAIIGAGT--MGSGIAALFARKGLQVVLIDVMEGALERARGV 46 (311)
T ss_pred cEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH
Confidence 4677788764 3333333221 223699999999998877 54
No 495
>PRK05993 short chain dehydrogenase; Provisional
Probab=35.93 E-value=1.5e+02 Score=21.56 Aligned_cols=39 Identities=18% Similarity=0.090 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHH
Q psy7827 79 GAKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNH 118 (140)
Q Consensus 79 ~~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~ 118 (140)
++++|-.|+ +|.++..+++.+ ..+.+|++++.+++.++.
T Consensus 4 ~k~vlItGa-sggiG~~la~~l~~~G~~Vi~~~r~~~~~~~ 43 (277)
T PRK05993 4 KRSILITGC-SSGIGAYCARALQSDGWRVFATCRKEEDVAA 43 (277)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 456777775 455555555443 234467777777665543
No 496
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=35.81 E-value=74 Score=24.57 Aligned_cols=36 Identities=8% Similarity=0.214 Sum_probs=26.7
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhCCC-CeEEEEcCC
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKN-GSVVGVEHI 112 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~~~-~~v~gvD~s 112 (140)
+..+++||=.| |+|+++..+++.+... -+|++++..
T Consensus 18 ~~~~~~IlVtG-gtGfIG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 18 PSEKLRICITG-AGGFIASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCCCCEEEEEC-CccHHHHHHHHHHHhCCCEEEEEEec
Confidence 45678898776 7899998888876433 379998854
No 497
>PRK09291 short chain dehydrogenase; Provisional
Probab=35.79 E-value=1.6e+02 Score=20.83 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=23.5
Q ss_pred CEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH
Q psy7827 80 AKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 80 ~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a 119 (140)
+++|-.|++ |.++..+++.+ ..+.+|++++.++.-.+..
T Consensus 3 ~~vlVtGas-g~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~ 42 (257)
T PRK09291 3 KTILITGAG-SGFGREVALRLARKGHNVIAGVQIAPQVTAL 42 (257)
T ss_pred CEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 467777864 44555554443 2345788888776655444
No 498
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=35.72 E-value=1.1e+02 Score=23.35 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=27.7
Q ss_pred CCCCEEEEEcCC-CChHHHHHHHHhCCCCeEEEEcCCHHHHHHH
Q psy7827 77 VPGAKVLDVGSG-SGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 77 ~~~~~vLDiGcG-~G~~~~~la~~~~~~~~v~gvD~s~~~i~~a 119 (140)
.++.++|-.|+| .|..+..+++.. +.+++.++.+++..+.+
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~--G~~vi~~~~~~~~~~~~ 220 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSDKKREEA 220 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHH
Confidence 578888888764 445555566664 34688888887766555
No 499
>PRK07024 short chain dehydrogenase; Provisional
Probab=35.46 E-value=1.5e+02 Score=21.07 Aligned_cols=39 Identities=15% Similarity=0.122 Sum_probs=22.3
Q ss_pred CEEEEEcCCCChHHHHHHHHh-CCCCeEEEEcCCHHHHHHH
Q psy7827 80 AKVLDVGSGSGYLTTCFAHMV-GKNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 80 ~~vLDiGcG~G~~~~~la~~~-~~~~~v~gvD~s~~~i~~a 119 (140)
+++|=.|+ +|.++..+++.+ ..+.+|+.++.+++.++..
T Consensus 3 ~~vlItGa-s~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~ 42 (257)
T PRK07024 3 LKVFITGA-SSGIGQALAREYARQGATLGLVARRTDALQAF 42 (257)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 45666665 444444444443 2344677788777666555
No 500
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=35.17 E-value=1.6e+02 Score=21.69 Aligned_cols=42 Identities=31% Similarity=0.381 Sum_probs=28.6
Q ss_pred cCCCCEEEEEcCCCChHHHHHHHHhC-CCCeEEEEcCCHHHHHHH
Q psy7827 76 LVPGAKVLDVGSGSGYLTTCFAHMVG-KNGSVVGVEHIPEIVNHA 119 (140)
Q Consensus 76 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~~v~gvD~s~~~i~~a 119 (140)
+.++.+||=.|+ |.++..+.+... .+.++++++.+++..+.+
T Consensus 153 ~~~g~~vlV~g~--g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~ 195 (319)
T cd08242 153 ITPGDKVAVLGD--GKLGLLIAQVLALTGPDVVLVGRHSEKLALA 195 (319)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH
Confidence 567889988875 455555433321 234699999999888887
Done!