RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7827
(140 letters)
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl
homocysteine, protein repair; HET: SAH; 1.50A {Homo
sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Length = 226
Score = 124 bits (315), Expect = 6e-37
Identities = 51/121 (42%), Positives = 72/121 (59%), Gaps = 5/121 (4%)
Query: 20 IKSPRVIDAMIHIDRGHFCAHNDSRKYMLAARDIGYGSIIDNPVQHAEVLELLKDKLVPG 79
IK+ +V + M+ DR H+ YM + + IG+ + I P HA LELL D+L G
Sbjct: 22 IKTDKVFEVMLATDRSHYA---KCNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEG 78
Query: 80 AKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLN-KRIKFI 137
AK LDVGSGSG LT CFA MVG G V+G++HI E+V+ + +NV L+ R++ +
Sbjct: 79 AKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLV 138
Query: 138 C 138
Sbjct: 139 V 139
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
methyltransferase, isomerization, protein repair,
S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
melanogaster} SCOP: c.66.1.7
Length = 227
Score = 119 bits (301), Expect = 7e-35
Identities = 49/138 (35%), Positives = 69/138 (50%), Gaps = 12/138 (8%)
Query: 8 MVPTDYIVEIDSIKSPRVIDAMIHIDRGHFCAHNDSRKYMLAARDIGYGSIIDNPVQHAE 67
++ + + I S V AM DR H+ YM A + IG G I P HA
Sbjct: 19 LI--RQLKDHGVIASDAVAQAMKETDRKHYS---PRNPYMDAPQPIGGGVTISAPHMHAF 73
Query: 68 VLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGS-----VVGVEHIPEIVNHA-SN 121
LE L+D L PGA++LDVGSGSGYLT CF + G +VG+EH E+V + +N
Sbjct: 74 ALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKAN 133
Query: 122 VTTLHYPKLN-KRIKFIC 138
+ T L+ ++ +
Sbjct: 134 LNTDDRSMLDSGQLLIVE 151
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A
methyltransferase; protein repair, isoaspartyl
formation, P. falciparum; HET: SAH; 2.00A {Plasmodium
falciparum}
Length = 227
Score = 112 bits (282), Expect = 5e-32
Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 20 IKSPRVIDAMIHIDRGHFCAHNDSRKYMLAARDIGYGSIIDNPVQHAEVLELLKDKLVPG 79
I V + M+ +DRG + Y+ I +G I P HA L+ L + L PG
Sbjct: 25 IDDDDVYNTMLQVDRGKYI---KEIPYIDTPVYISHGVTISAPHMHALSLKRLINVLKPG 81
Query: 80 AKVLDVGSGSGYLTTCFAH----MVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLN-KR 133
++ +DVGSGSGYLT C A + KN V+G+E + ++VN + N+ L
Sbjct: 82 SRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDN 141
Query: 134 IKFIC 138
K I
Sbjct: 142 FKIIH 146
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 108 bits (272), Expect = 1e-30
Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 10/133 (7%)
Query: 8 MVPTDYIVEIDSIKSPRVIDAMIHIDRGHFC-AHNDSRKYMLAARDIGYGSIIDNPVQHA 66
++ + ++ IKS RVIDA++ + R F H Y+ +IGYG I
Sbjct: 10 VI--EKLIREGYIKSKRVIDALLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIHMVG 67
Query: 67 EVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTL 125
+ ELL L PG KVL++G+G GY A +VG++G VV +E IPE+ A + L
Sbjct: 68 MMCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKL 125
Query: 126 HYPKLNKRIKFIC 138
Y + I
Sbjct: 126 GY----DNVIVIV 134
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann
methyltransferase, protein repair isomerization; HET:
SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB:
1jg2_A* 1jg3_A* 1jg4_A*
Length = 235
Score = 101 bits (254), Expect = 1e-27
Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 8/119 (6%)
Query: 20 IKSPRVIDAMIHIDRGHFCAHNDSRK-YMLAARDIGYGSIIDNPVQHAEVLELLKDKLVP 78
I+S V A + R + ++ I G + P A +LE+ L P
Sbjct: 34 IRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIAN--LKP 91
Query: 79 GAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKF 136
G +L+VG+GSG+ + +V V +E IPE+V A N+ N +
Sbjct: 92 GMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVK--NVHVIL 146
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 95.8 bits (239), Expect = 1e-25
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 15/117 (12%)
Query: 20 IKSPRVIDAMIHIDRGHFC-AHNDSRKY--MLAARDIGYGSIIDNPVQHAEVLELLKDKL 76
IK+ + +A +DR F + Y A I G +L+ L L
Sbjct: 11 IKTQELAEAFNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNLGIFMLDELD--L 68
Query: 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-------SNVTTLH 126
G KVL++G+G GY T A +V K VV VE ++ N+A +N+ +
Sbjct: 69 HKGQKVLEIGTGIGYYTALIAEIVDK---VVSVEINEKMYNYASKLLSYYNNIKLIL 122
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 95.6 bits (238), Expect = 6e-25
Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 13/124 (10%)
Query: 22 SPRVIDAMIHIDRGHFC--AHNDSRKYMLAA----RDIGYGSIIDNPVQHAEVLELLKDK 75
S + A + I R F ++ S Y D S P A +E +
Sbjct: 15 SDHIAKAFLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG-- 72
Query: 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRI 134
L G +VL++G G+GY + +VG+ G VV VE+ +I A NV L + +
Sbjct: 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI----ENV 128
Query: 135 KFIC 138
F+C
Sbjct: 129 IFVC 132
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type
fold, S-adenosyl-L- methionine; HET: SAH; 1.80A
{Escherichia coli}
Length = 210
Score = 88.8 bits (221), Expect = 5e-23
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 9/119 (7%)
Query: 20 IKSPRVIDAMIHIDRGHFC-AHNDSRKYMLAARDIGYGSIIDNPVQHAEVLELLKDKLVP 78
I+ +V++A+ + R F + + + A IG G I P A + ELL+ L P
Sbjct: 20 IQDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARMTELLE--LTP 77
Query: 79 GAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTLHYPKLNKRIKF 136
++VL++G+GSGY T AH+V V VE I + A + L N +
Sbjct: 78 QSRVLEIGTGSGYQTAILAHLVQH---VCSVERIKGLQWQARRRLKNLDLH--NVSTRH 131
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 57.3 bits (138), Expect = 6e-11
Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 65 HAEVLELLKD---KLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASN 121
+ + + L + K+ ++D G G GYL ++ + G++ ++ A
Sbjct: 6 NDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARE 65
Query: 122 VTTLHYPKLNKRIKFIC 138
+ L +F+
Sbjct: 66 ----LFRLLPYDSEFLE 78
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 54.2 bits (130), Expect = 5e-10
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 59 IDNPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNH 118
I N + + + +K + G V+D G+G T A +VG+NG V G + + + +
Sbjct: 5 IKNSLGQSH--DYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIAN 62
Query: 119 ASNVTTLHYPKLNKRIKFIC 138
+ L L R+ I
Sbjct: 63 TT--KKLTDLNLIDRVTLIK 80
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 54.2 bits (129), Expect = 8e-10
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 61 NPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
NP L +LK + G VLD+G G+LT A G +VG++ +++ A
Sbjct: 29 NPSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDIDSRLIHSA 86
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 52.4 bits (125), Expect = 5e-09
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
+ GA VLD+G G+G + +VG++G V+GV+ + + A
Sbjct: 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVA 124
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 51.6 bits (124), Expect = 5e-09
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
L G VLDVG+G+G+ + MVG+ G V ++ E+VN+A
Sbjct: 35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYA 78
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 52.0 bits (124), Expect = 6e-09
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGV 109
PG K+L++G G G L+ A VG +G V G+
Sbjct: 43 PGEKILEIGCGQGDLSAVLADQVGSSGHVTGI 74
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 51.2 bits (122), Expect = 6e-09
Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 9/87 (10%)
Query: 39 AHNDSRKY--MLAARDIGYGSIIDNPVQHAE----VLELLKDKLVPGAKVLDVGSGSGYL 92
A N SR+ LA GY + + L L P +VL+ G G G
Sbjct: 3 AMNHSRESYDRLARELGGYRHPWARVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGPD 62
Query: 93 TTCFAHMVGKNGSVVGVEHIPEIVNHA 119
F + + PE++ A
Sbjct: 63 AARFGPQAAR---WAAYDFSPELLKLA 86
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 49.8 bits (118), Expect = 4e-08
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 46 YMLAARDIGYGSIIDNPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGS 105
+ G+ I P +L ++ + PG VL+ GSGSG ++ + VG G
Sbjct: 75 LEDYVVLMKRGTAITFPKDINMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGR 132
Query: 106 VVGVEHIPEIVNHA 119
V+ E + + A
Sbjct: 133 VISFEVRKDHHDLA 146
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 49.3 bits (117), Expect = 5e-08
Identities = 13/55 (23%), Positives = 21/55 (38%)
Query: 65 HAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
H L+ L PG V V G + +VG+++ PE ++ A
Sbjct: 105 HGHFRRALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGA 159
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 48.9 bits (116), Expect = 7e-08
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Query: 62 PVQHAEVLELLKDKLV-PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHAS 120
P ++ +++ + ++DVG G G T A + ++G + ++ A
Sbjct: 19 PSYPSDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTA- 77
Query: 121 NVTTLHYPKLNKRIKFIC 138
V P K + F
Sbjct: 78 EVIKEGSPDTYKNVSFKI 95
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 48.5 bits (115), Expect = 8e-08
Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 23/100 (23%)
Query: 20 IKSPRVIDAMIHIDRGHFCAHNDSRKYMLAARDIGYGSIIDNPVQHAEVLELLKDKLVPG 79
I P +ID ++++ R + ++ D+ G
Sbjct: 77 ILIPSLIDEIMNMKRRTQIVYPKDSSFIAMMLDVK-----------------------EG 113
Query: 80 AKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
+++D G GSG + A VG +G V E E A
Sbjct: 114 DRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLA 153
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 48.0 bits (114), Expect = 1e-07
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
PGAKVL+ G G G T A + + ++ PE + A
Sbjct: 35 YPPGAKVLEAGCGIGAQTVILAKN-NPDAEITSIDISPESLEKA 77
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann
superfamily, S-adenosyl-L-M (SAM) binding, nucleolus;
HET: SAM; 1.73A {Aeropyrum pernix}
Length = 233
Score = 47.4 bits (112), Expect = 2e-07
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 64 QHAEVLELLKD-KLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNV 122
A +L+ L + + G ++L +G SG + + ++G G + GVE P ++ V
Sbjct: 62 LAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTV 121
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 45.0 bits (107), Expect = 7e-07
Identities = 7/53 (13%), Positives = 17/53 (32%), Gaps = 5/53 (9%)
Query: 67 EVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
E L + + ++D G G+G+ K + ++ +
Sbjct: 8 EYLPNIFEG--KKGVIVDYGCGNGFYCKYLLEFATK---LYCIDINVIALKEV 55
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 45.8 bits (108), Expect = 8e-07
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 53 IGYGSIIDNPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHI 112
+ G I +P A ++ + PG +++ G GSG LT A++VG G VV E
Sbjct: 70 MKRGPQIVHPKDAALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIR 127
Query: 113 PEIVNHA 119
+ A
Sbjct: 128 EDFAKLA 134
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 45.2 bits (107), Expect = 9e-07
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 65 HAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHAS 120
+ L +L GAK+L++G G+GY M+ V + PE+ AS
Sbjct: 30 RSATLTKFLGELPAGAKILELGCGAGYQA---EAMLAAGFDVDATDGSPELAAEAS 82
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 45.2 bits (106), Expect = 1e-06
Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 20/127 (15%)
Query: 10 PTDYIVEIDSIKSPRVIDAMIHIDRGHFCAHNDSRKYMLAARDIGYGSIIDNPVQHAEV- 68
D+ + + A+ I + F + + M A+++ D+P +
Sbjct: 47 TIDFESAKHILDDAEMNHALSLIRK--FYVNLGMKLEMEKAQEVIES---DSPWETLRSF 101
Query: 69 -----------LELLKDKLVPGAKVLDVGSGSGYLTT-CFAHMVGKNGSVVGVEHIPEIV 116
E + G + + +G G LT +H+ G V VE P+I
Sbjct: 102 YFYPRYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYG--MRVNVVEIEPDIA 159
Query: 117 NHASNVT 123
+ V
Sbjct: 160 ELSRKVI 166
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 44.5 bits (105), Expect = 2e-06
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 64 QHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
+ ++ + + A+VLDVG G GY T + K VGV+ ++
Sbjct: 39 SRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYK---AVGVDISEVMIQKG 91
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 43.7 bits (103), Expect = 4e-06
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 72 LKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTTLHYPKLN 131
++L AK+ D+G G+G T A V G + G++ P+ + +
Sbjct: 40 FINELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKA--NCA 95
Query: 132 KRIKFIC 138
R+K I
Sbjct: 96 DRVKGIT 102
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 43.3 bits (102), Expect = 6e-06
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHAS-NVTTLHYPKLNKRIKF 136
++ D+G+G+G A + + V E E+ A ++ + RI+
Sbjct: 36 RACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEV 94
Query: 137 IC 138
+
Sbjct: 95 LE 96
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI,
tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Length = 258
Score = 43.1 bits (101), Expect = 7e-06
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 27 DAMIHIDRGHFCAHNDSRKYMLA-------ARDIGYGSIIDNPVQHAEVLELLKDKLVPG 79
+A++ G + + + + + P + ++ LL L PG
Sbjct: 40 EALLEAGPGGVVRTHLGEELSVHRPTLEEYLLHMKRSATPTYPKDASAMVTLLD--LAPG 97
Query: 80 AKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
+VL+ G+GSG LT A VG+ G V E P + A
Sbjct: 98 MRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQA 137
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 42.8 bits (100), Expect = 8e-06
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
L PG +L+VG GSG +++ + + G++ VE + + A
Sbjct: 108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKA 151
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 42.6 bits (100), Expect = 9e-06
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 72 LKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTTLHYPKLN 131
D L + + D+G G+G T A V G V G++ + ++ + L
Sbjct: 40 FIDNLTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQS--GLQ 95
Query: 132 KRIKFIC 138
R+ I
Sbjct: 96 NRVTGIV 102
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 42.4 bits (100), Expect = 1e-05
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 66 AEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
++L+LL + PG +LD+G G+G LT + V+G ++ ++ A
Sbjct: 47 EDLLQLLNPQ--PGEFILDLGCGTGQLT---EKIAQSGAEVLGTDNAATMIEKA 95
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 41.8 bits (98), Expect = 2e-05
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 7/75 (9%)
Query: 64 QHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVT 123
+ + LL + KVLD+ G G + + VVGV+ +++ A
Sbjct: 24 RIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFE---VVGVDISEDMIRKARE-- 78
Query: 124 TLHYPKLNKRIKFIC 138
+ ++FI
Sbjct: 79 --YAKSRESNVEFIV 91
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 41.4 bits (97), Expect = 2e-05
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 69 LELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTTLHYP 128
LEL+ + GA +LDVGS YL G+ S + E + A H
Sbjct: 6 LELVASFVSQGAILLDVGSDHAYL-PIELVERGQIKSAIAGEVVEGPYQSAVKNVEAH-- 62
Query: 129 KLNKRIKFIC 138
L ++I+
Sbjct: 63 GLKEKIQVRL 72
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 41.8 bits (98), Expect = 2e-05
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 9/70 (12%)
Query: 40 HNDSRKYMLAARDIGYGSIIDNPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHM 99
+R Y + + H + L++ L +VLD+G G+G +
Sbjct: 22 DRIARAYDSMYETPKWK------LYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQ-- 73
Query: 100 VGKNGSVVGV 109
+ VV V
Sbjct: 74 -ERGFEVVLV 82
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 41.3 bits (97), Expect = 3e-05
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 63 VQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
V +L + +VLD+G G G+L + + VGV+ +V+ A
Sbjct: 39 VTDQAILLAILG--RQPERVLDLGCGEGWLL---RALADRGIEAVGVDGDRTLVDAA 90
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 41.4 bits (97), Expect = 3e-05
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 69 LELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTTLHYP 128
L+ + + + GA++LDVGS YL F +G + E + A + H
Sbjct: 12 LQKVANYVPKGARLLDVGSDHAYL-PIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEH-- 68
Query: 129 KLNKRIKFIC 138
L +I
Sbjct: 69 GLTSKIDVRL 78
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 41.1 bits (96), Expect = 3e-05
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 61 NPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
N + V+ LK +V+D+G G G L + GV+ + A
Sbjct: 14 NQQRMNGVVAALKQS--NARRVIDLGCGQGNLLKILLKD-SFFEQITGVDVSYRSLEIA 69
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 40.5 bits (95), Expect = 4e-05
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 67 EVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTTLH 126
V + +LD+G+G+G L+ + V+ +++ A N
Sbjct: 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKN----R 87
Query: 127 YPKLNKRIKFICEY 140
+ N ++K+I
Sbjct: 88 FRG-NLKVKYIEAD 100
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 40.7 bits (95), Expect = 5e-05
Identities = 8/72 (11%), Positives = 22/72 (30%), Gaps = 4/72 (5%)
Query: 49 AAR-DIGYGSIIDNPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVV 107
A D + Q A + L++G G+G + ++ + +
Sbjct: 9 AYAYDRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIA---LPLIARGYRYI 65
Query: 108 GVEHIPEIVNHA 119
++ ++
Sbjct: 66 ALDADAAMLEVF 77
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 40.6 bits (95), Expect = 5e-05
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 20/100 (20%)
Query: 40 HNDSRKYMLAARDIGYGSIIDNPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHM 99
KY A + + + H ++ PG +L++GS G T + +
Sbjct: 14 DTAGHKY---AYNFDFDVM------HPFMVRAFTPFFRPG-NLLELGSFKGDFT---SRL 60
Query: 100 VGKNGSVVGVEHIPEIVNHASNVTTLHYPKLNKRIKFICE 139
+ VE E ++HA +L I +I
Sbjct: 61 QEHFNDITCVEASEEAISHAQG-------RLKDGITYIHS 93
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 40.2 bits (94), Expect = 5e-05
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
+VLD+G+G+G+ F+ V + +GV+ E+V A
Sbjct: 21 AEHRVLDIGAGAGHTALAFSPYVQE---CIGVDATKEMVEVA 59
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 40.3 bits (94), Expect = 6e-05
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 66 AEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
++ LL L G+ + D+G+G+G + + + V VE + A
Sbjct: 24 NAIINLLN--LPKGSVIADIGAGTGGYS---VALANQGLFVYAVEPSIVMRQQA 72
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 40.3 bits (94), Expect = 6e-05
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 9/68 (13%)
Query: 64 QHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA---- 119
LE L+ VL++ SG+GY T H+ G V ++ E++ A
Sbjct: 33 AAPAALERLRA-GNIRGDVLELASGTGYWT---RHLSGLADRVTALDGSAEMIAEAGRHG 88
Query: 120 -SNVTTLH 126
NV
Sbjct: 89 LDNVEFRQ 96
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 40.2 bits (94), Expect = 6e-05
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 63 VQHAEVLELLKD-KLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
+ +LL L D+G G G T G + G++ +++ A
Sbjct: 17 ERTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYG-VNVITGIDSDDDMLEKA 73
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 40.2 bits (94), Expect = 6e-05
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 12/74 (16%)
Query: 65 HAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTT 124
+ ++LE + +K VL+ G G+G LT ++ +V G+E E+ A
Sbjct: 34 YEDILEDVVNK--SFGNVLEFGVGTGNLT---NKLLLAGRTVYGIEPSREMRMIAKE--- 85
Query: 125 LHYPKLNKRIKFIC 138
KL K
Sbjct: 86 ----KLPKEFSITE 95
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 40.2 bits (94), Expect = 8e-05
Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 19/90 (21%)
Query: 32 IDRGHFCAHNDSRKYMLAARDIGYGSIIDNPVQHAEVLELLKDKLV--PGAKVLDVGSGS 89
I R + ++ R I NP + L L PG ++LD+GSGS
Sbjct: 3 IPRIFTISESEHR--------------IHNPFTEEK-YATLGRVLRMKPGTRILDLGSGS 47
Query: 90 GYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
G + +A G + G++ A
Sbjct: 48 GEMLCTWARDHG--ITGTGIDMSSLFTAQA 75
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 39.5 bits (92), Expect = 9e-05
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
Query: 69 LELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
L +VLD+G G G + +GV+ +++
Sbjct: 32 LRRYIPYFKGCRRVLDIGCGRGEFL---ELCKEEGIESIGVDINEDMIKFC 79
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 39.5 bits (92), Expect = 1e-04
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 3/70 (4%)
Query: 69 LELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTTLHYP 128
LE + + ++ D+GS YL CFA + E + A
Sbjct: 12 LEKVASYITKNERIADIGSDHAYL-PCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSS-- 68
Query: 129 KLNKRIKFIC 138
L ++I
Sbjct: 69 GLTEQIDVRK 78
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural
genomics, protein structure initiative; HET: SAM; 1.98A
{Mycobacterium tuberculosis} SCOP: c.66.1.13
Length = 280
Score = 39.4 bits (91), Expect = 1e-04
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 71 LLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
+ + + PGA+VL+ G+GSG LT VG G V+ E + HA
Sbjct: 92 VHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHA 140
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA,
2'-O-methylation, coiled-coil, methyltransfer binding,
rRNA processing; HET: SAM; 2.60A {Sulfolobus
solfataricus} PDB: 3id5_B* 3pla_E*
Length = 232
Score = 39.3 bits (91), Expect = 1e-04
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIV 116
G KVL +G+ SG + + ++ NG GVE P +V
Sbjct: 76 KGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVV 114
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 39.0 bits (91), Expect = 2e-04
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 66 AEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGV 109
A+++++ K +VLDV +G G++ FA V K VV
Sbjct: 27 AKLMQIAALK--GNEEVLDVATGGGHVANAFAPFVKK---VVAF 65
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 38.6 bits (90), Expect = 2e-04
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 64 QHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNG-SVVGVEHIPEIVNHA 119
H+EVLE +K +V K LD+G G+G + A NG V + + +
Sbjct: 20 THSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLA----ANGYDVDAWDKNAMSIANV 70
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 39.1 bits (90), Expect = 2e-04
Identities = 13/77 (16%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 61 NPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHAS 120
+ + L+ +++ + ++D G GSG L +++GV+ P+ + A+
Sbjct: 706 SKQRVEYALKHIRE--SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAA 763
Query: 121 NVTTLHYPKLNKRIKFI 137
+ + K +K
Sbjct: 764 KMLHVKLNKEACNVKSA 780
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 38.6 bits (90), Expect = 2e-04
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 55 YGSIIDNPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPE 114
G++I ++E +LDVGSG+G T H+ + G+E
Sbjct: 20 LGTVISAEDPDRVLIEPWATG--VDGVILDVGSGTGRWT---GHLASLGHQIEGLEPATR 74
Query: 115 IVNHA 119
+V A
Sbjct: 75 LVELA 79
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 38.6 bits (90), Expect = 2e-04
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 65 HAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
+ +L+ +K + +VLD+G SG L A + V G+E PE A
Sbjct: 22 NPNLLKHIKKE---WKEVLDIGCSSGALG---AAIKENGTRVSGIEAFPEAAEQA 70
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 38.7 bits (90), Expect = 2e-04
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 12/98 (12%)
Query: 42 DSRKYMLAARDIGYGSIIDNPVQHAEVLELLKDKL-VPGAKVLDVGSGSGYLTTCFAHMV 100
DS + M+ AR + P++ A ++ L+++L VLD+G G GY T FA
Sbjct: 50 DSAE-MMQARRAFLDAGHYQPLRDA-IVAQLRERLDDKATAVLDIGCGEGYYTHAFAD-A 106
Query: 101 GKNGSVVGVEHIPEIVNHASNVTTLHYPKLNKRIKFIC 138
+ G++ + A+ K ++ F
Sbjct: 107 LPEITTFGLDVSKVAIKAAA--------KRYPQVTFCV 136
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 38.7 bits (90), Expect = 2e-04
Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 6/67 (8%)
Query: 72 LKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTTLHYPKLN 131
++ VLD G+G G G+E + A N + N
Sbjct: 17 YCNESNLDKTVLDCGAGGDLPPLSIFVEDGYK--TYGIEISDLQLKKAEN----FSRENN 70
Query: 132 KRIKFIC 138
++
Sbjct: 71 FKLNISK 77
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 38.5 bits (89), Expect = 2e-04
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 69 LELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGV 109
L + P ++D G+G T + V+G+
Sbjct: 47 LPRFELLFNPELPLIDFACGNGTQTKFLSQFF---PRVIGL 84
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 38.7 bits (90), Expect = 3e-04
Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 5/85 (5%)
Query: 55 YGSIIDNPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNG-SVVGVEHIP 113
Y +I + +E E VL++ +G G LT F G V +E
Sbjct: 59 YRDLIQDADGTSEAREFATRTGPVSGPVLELAAGMGRLTFPFL----DLGWEVTALELST 114
Query: 114 EIVNHASNVTTLHYPKLNKRIKFIC 138
++ + R +
Sbjct: 115 SVLAAFRKRLAEAPADVRDRCTLVQ 139
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 37.8 bits (88), Expect = 3e-04
Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
Query: 61 NPVQHAEVLELLKDKLV-----PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGV 109
+ A + ++ + ++ +D+GSG G L+ A S+ +
Sbjct: 21 SKTLFAPIYPIIAENIINRFGITAGTCIDIGSGPGALSIALAKQSD--FSIRAL 72
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 38.0 bits (88), Expect = 3e-04
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEI 115
+VL+ G+GSG L + + G+ + VE +
Sbjct: 91 KEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKT 128
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 37.7 bits (87), Expect = 4e-04
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 65 HAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
+ LL+ +L P ++L +G G+ L+ N V V++ +V
Sbjct: 29 FSSFRALLEPELRPEDRILVLGCGNSALSYELFLGGFPN--VTSVDYSSVVVAAM 81
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics,
structural genomics consortium, SGC; HET: MTA; 1.82A
{Homo sapiens}
Length = 233
Score = 37.7 bits (87), Expect = 4e-04
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNV 122
PGAKVL +G+ SG + + +VG +G V VE N+
Sbjct: 77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINL 121
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 37.8 bits (88), Expect = 4e-04
Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 63 VQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNV 122
V + E + + +++ PG ++ D+G G+G T A + V GV+ E++ A
Sbjct: 18 VPYPEWVAWVLEQVEPGKRIADIGCGTGTATLLLA----DHYEVTGVDLSEEMLEIAQE- 72
Query: 123 TTLHYPKLNKRIKFIC 138
+ N+ + F
Sbjct: 73 ---KAMETNRHVDFWV 85
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 37.8 bits (88), Expect = 4e-04
Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 9/72 (12%)
Query: 68 VLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNG-SVVGVEHIPEIVNHASNVTTLH 126
++E + + LD+ G+G LT + V+ E+++ A N
Sbjct: 27 IIEKCVENNLVFDDYLDLACGTGNLTENLC----PKFKNTWAVDLSQEMLSEAEN----K 78
Query: 127 YPKLNKRIKFIC 138
+ + + C
Sbjct: 79 FRSQGLKPRLAC 90
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 37.5 bits (87), Expect = 5e-04
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 70 ELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
L+ GAK+LD G G G + ++ + V+G + P ++++A
Sbjct: 38 RLIDAMAPRGAKILDAGCGQGRIG---GYLSKQGHDVLGTDLDPILIDYA 84
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 37.6 bits (87), Expect = 5e-04
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 63 VQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
+ E+ ++L D VLD+G G G+ A K V+G++ ++ A
Sbjct: 31 GEWHELKKMLPD--FNQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEA 83
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 37.2 bits (86), Expect = 5e-04
Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 57 SIIDNPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIV 116
++I P+ + + L + L + V+D G+G T A + G + V + + +
Sbjct: 3 AMIKRPIHMSH--DFLAEVLDDESIVVDATMGNGNDT---AFLAGLSKKVYAFDVQEQAL 57
Query: 117 NHASNVTTLHYPKLNKRIKFIC 138
S + + + I
Sbjct: 58 GKTSQRLSDLG---IENTELIL 76
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 37.1 bits (86), Expect = 6e-04
Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 69 LELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTTLH 126
++ L+ + + VLD+G+ +G +T K +VV + + +
Sbjct: 14 MDALEREGLEMKIVLDLGTSTGVITEQLR----KRNTVVSTDLNIRALESHRGGNLVR 67
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 37.5 bits (86), Expect = 6e-04
Identities = 18/123 (14%), Positives = 35/123 (28%), Gaps = 11/123 (8%)
Query: 22 SPRVIDAMIHIDRGHFCAHNDSRKYMLAARDIGYGSIIDNPVQHAEVLELLKDKLVPGAK 81
S ++ ++ H + YG + A++++ +K
Sbjct: 121 STGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGET--SFDLVAQMIDEIKMT--DDDL 176
Query: 82 VLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTTL------HYPKLNKRIK 135
+D+GSG G + A GVE +A + Y K +
Sbjct: 177 FVDLGSGVGQVVLQVAAATNC-KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYT 235
Query: 136 FIC 138
Sbjct: 236 LER 238
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 37.1 bits (86), Expect = 6e-04
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 65 HAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
AE LK L PG +L+VG+G+GY + VGVE ++
Sbjct: 23 IAEEERALKGLLPPGESLLEVGAGTGYWLRRLPY-----PQKVGVEPSEAMLAVG 72
>2avd_A Catechol-O-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens}
SCOP: c.66.1.1
Length = 229
Score = 36.6 bits (85), Expect = 0.001
Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 4/94 (4%)
Query: 44 RKYMLAARDIGYGSIIDNPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKN 103
R L + G + Q A++L L +L+ K LD+G+ +GY A + +
Sbjct: 37 RSLRLLTLEQPQGDSMMTCEQ-AQLLANLA-RLIQAKKALDLGTFTGYSALALALALPAD 94
Query: 104 GSVVGVEHIPEIVNHASNVTTLHYPKLNKRIKFI 137
G VV E + + + +I
Sbjct: 95 GRVVTCEVDAQPPELGRPL--WRQAEAEHKIDLR 126
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 36.0 bits (84), Expect = 0.001
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 9/64 (14%)
Query: 60 DNPVQHAEV----LELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEI 115
P+ E+ + L L V+DVG GSG +T A V ++++
Sbjct: 15 GVPITKEEIRAVSIGKLN--LNKDDVVVDVGCGSGGMTVEIAKRCKF---VYAIDYLDGA 69
Query: 116 VNHA 119
+
Sbjct: 70 IEVT 73
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA
binding, structural genomics, BSGC structure funded by
NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB:
2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Length = 227
Score = 36.6 bits (84), Expect = 0.001
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIV 116
PG VL +G SG + + +VG G + G+E P ++
Sbjct: 73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVL 111
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 36.2 bits (84), Expect = 0.001
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 68 VLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPE 114
L + + +DVG G+G +T A V + V ++ PE
Sbjct: 23 CLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRR---VYAIDRNPE 66
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 36.3 bits (84), Expect = 0.001
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 65 HAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGV 109
++ ++ + L ++LD+G GSG ++ A K SV G+
Sbjct: 17 SLDLYPIIHNYLQEDDEILDIGCGSGKISLELA---SKGYSVTGI 58
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 36.3 bits (84), Expect = 0.002
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 68 VLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNG-SVVGVEHIPEIVNHA 119
+ +L++ + + +LDV G+G F K G+E +++ HA
Sbjct: 30 IADLVRSRTPEASSLLDVACGTGTHLEHFT----KEFGDTAGLELSEDMLTHA 78
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 35.7 bits (82), Expect = 0.002
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 61 NPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
N + V+ +LK V KV+D+G G G L + + GV+ ++ A
Sbjct: 14 NQQRLGTVVAVLKS--VNAKKVIDLGCGEGNLLSLLLKD-KSFEQITGVDVSYSVLERA 69
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase,
usnRNA, snoRNA, telomerase, cytoplasm,
methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo
sapiens} PDB: 3egi_A*
Length = 241
Score = 35.8 bits (82), Expect = 0.002
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 61 NPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHAS 120
P + AE + + V+D G G T FA V+ ++ P + A
Sbjct: 61 TPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFAL---TGMRVIAIDIDPVKIALAR 117
Query: 121 NVTTLHYPKLNKRIKFIC 138
N ++ + +I+FIC
Sbjct: 118 NNAEVY--GIADKIEFIC 133
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 35.9 bits (83), Expect = 0.002
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHAS-NVTTLHYPKLNKRIKF 136
K++D+ SG+G + + +VGVE + + A +V L +I+
Sbjct: 49 RKGKIIDLCSGNGIIPLLLSTRT--KAKIVGVEIQERLADMAKRSVAYNQ---LEDQIEI 103
Query: 137 IC 138
I
Sbjct: 104 IE 105
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 35.5 bits (82), Expect = 0.002
Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 67 EVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
+ +L + V G +++D+G G G+ V+G++ +++ A
Sbjct: 34 ALRAMLPE--VGGLRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLARA 82
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.002
Identities = 18/137 (13%), Positives = 38/137 (27%), Gaps = 31/137 (22%)
Query: 10 PTDYIVEIDSIKSPRVIDAMIHIDRGHFCAHNDSRKYMLAARDIGYGSIIDNPVQHAEVL 69
+V + ++++ + +A + C K +L R + L
Sbjct: 244 ENCLLV-LLNVQNAKAWNAF---NLS--C------KILLTTRFKQVTDFLSAATTTHISL 291
Query: 70 ELLKDKLVPG------AKVLDVGSGSGYLTTCFAH-----MVGKNGSVVGVEHIPEIVNH 118
+ L P K LD + ++ E I + +
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA--------ESIRDGLAT 343
Query: 119 ASNVTTLHYPKLNKRIK 135
N ++ KL I+
Sbjct: 344 WDNWKHVNCDKLTTIIE 360
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH;
2.30A {Leptospira interrogans}
Length = 239
Score = 35.4 bits (82), Expect = 0.003
Identities = 17/94 (18%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 44 RKYMLAARDIGYGSIIDNPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKN 103
K + ++ +P + + L +L K+ +++++G+ +GY + CFA + ++
Sbjct: 28 LKLRKETGTLAQANMQISPEE-GQFLNILT-KISGAKRIIEIGTFTGYSSLCFASALPED 85
Query: 104 GSVVGVEHIPEIVNHASNVTTLHYPKLNKRIKFI 137
G ++ + E N A L +I
Sbjct: 86 GKILCCDVSEEWTNVARKY--WKENGLENKIFLK 117
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 35.2 bits (81), Expect = 0.003
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 75 KLVPGAKVLDVGSGSGYLTTCFAHMVG 101
L+P + +++G G+G +G
Sbjct: 44 CLLPEGRGVEIGVGTGRFAVPLKIKIG 70
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 35.2 bits (81), Expect = 0.003
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 15/91 (16%)
Query: 55 YGSIIDNPVQHAE-----VLELLKD-KLVPGAKVLDVGSGSGYLTTCFAHMVGKNG-SVV 107
Y +I ++ + V E+ K+ +VLD+ G+G T A + G VV
Sbjct: 12 YDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELA----ERGYEVV 67
Query: 108 GVEHIPEIVNHASNVTTLHYPKLNKRIKFIC 138
G++ E++ A + N +I+F+
Sbjct: 68 GLDLHEEMLRVARR----KAKERNLKIEFLQ 94
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 35.2 bits (81), Expect = 0.004
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 68 VLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNG-SVVGVEHIPEIVNHA 119
+ L++ A +LDV G+G A + +V G+E +++ A
Sbjct: 40 LAALVRRHSPKAASLLDVACGTGMHLRHLA----DSFGTVEGLELSADMLAIA 88
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 34.7 bits (80), Expect = 0.004
Identities = 14/74 (18%), Positives = 21/74 (28%), Gaps = 4/74 (5%)
Query: 60 DNPVQHAEV--LELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVN 117
D + V L + P + D+G GSG + + + V E E
Sbjct: 5 DGQLTKQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRS-TPQTTAVCFEISEERRE 63
Query: 118 HAS-NVTTLHYPKL 130
N L
Sbjct: 64 RILSNAINLGVSDR 77
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 35.0 bits (80), Expect = 0.004
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 5/74 (6%)
Query: 65 HAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTT 124
++ L+ +P + L G G G+ A VVG++ + A+
Sbjct: 53 TPLIVHLVDTSSLPLGRALVPGCGGGHDVVAMA---SPERFVVGLDISESALAKANETYG 109
Query: 125 LHYPKLNKRIKFIC 138
+ F+
Sbjct: 110 SSP--KAEYFSFVK 121
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 34.8 bits (80), Expect = 0.005
Identities = 13/67 (19%), Positives = 18/67 (26%), Gaps = 4/67 (5%)
Query: 72 LKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTTLHYPKLN 131
+ L AK LD+G+G G G S+ + P L
Sbjct: 76 MTGVLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQA--GLA 131
Query: 132 KRIKFIC 138
I
Sbjct: 132 DNITVKY 138
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase,
SAM-binding domain, PSI-2, nysgxrc; 2.00A
{Lactobacillus delbrueckii subsp}
Length = 205
Score = 34.5 bits (80), Expect = 0.006
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 69 LELLKDKLVPGAKVLDVGSGSGYL 92
+ ++ +V V DVG+GSG L
Sbjct: 51 MLGIERAMVKPLTVADVGTGSGIL 74
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase
S-adenosly-L-methionine dependent methyltransfer
posttranslational modification; 1.59A {Thermus
thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A
2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A*
3egv_A* 3cjt_A*
Length = 254
Score = 34.6 bits (80), Expect = 0.006
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 69 LELLKDKLVPGAKVLDVGSGSGYL 92
L+ L L PG KVLD+G+GSG L
Sbjct: 111 LKALARHLRPGDKVLDLGTGSGVL 134
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A
{Synechocystis SP}
Length = 232
Score = 34.2 bits (79), Expect = 0.006
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 81 KVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTTLHYPKLNKRIKFI 137
+VL++G GY A + +G ++ + P A + ++I
Sbjct: 75 QVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKY--WQKAGVAEKISLR 129
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 34.4 bits (79), Expect = 0.007
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 64 QHAEVLELLKD-KLVPGAKVLDVGSGSGYLTTCFAHMVGKNG-SVVGVEHIPEIVNHASN 121
++L D +L +KVLD+GSG G ++ K G G++ IVN A+
Sbjct: 40 GLEATKKILSDIELNENSKVLDIGSGLGGGC---MYINEKYGAHTHGIDICSNIVNMANE 96
Query: 122 VTTLHYPKLNKRIKFIC 138
N +I F
Sbjct: 97 RV-----SGNNKIIFEA 108
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing,
snoRNP, structural genomics, BSGC structure funded by
NIH; 1.60A {Methanocaldococcus jannaschii} SCOP:
c.66.1.3 PDB: 1g8s_A
Length = 230
Score = 34.3 bits (78), Expect = 0.007
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNV 122
+K+L +G+ +G + + G V +E+ P I+ +
Sbjct: 74 RDSKILYLGASAGTTPS-HVADIADKGIVYAIEYAPRIMRELLDA 117
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 34.4 bits (79), Expect = 0.008
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 8/73 (10%)
Query: 67 EVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNG-SVVGVEHIPEIVNHASNVTTL 125
E++ LL + G +VLDVG G G + V G+ VN A+ T
Sbjct: 52 EMIALLD--VRSGDRVLDVGCGIGKPA---VRLATARDVRVTGISISRPQVNQANARATA 106
Query: 126 HYPKLNKRIKFIC 138
L R+ F
Sbjct: 107 A--GLANRVTFSY 117
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH;
1.37A {Mesembryanthemum crystallinum}
Length = 237
Score = 33.8 bits (78), Expect = 0.008
Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
Query: 49 AARDIGYGSIIDNPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVG 108
A + +P+ +++ + KLV K ++VG +GY A + +G +
Sbjct: 43 ANESHPDSYMSTSPLA-GQLMSFVL-KLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITA 100
Query: 109 VEHIPEIVNHASNVTTLHYPKLNKRIKFI 137
++ E + + +I FI
Sbjct: 101 IDFDREAYEIGLPF--IRKAGVEHKINFI 127
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
transferase; 1.90A {Geobacter sulfurreducens pca}
Length = 210
Score = 33.7 bits (78), Expect = 0.009
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 81 KVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTTLHYPKLNKRIKFI 137
V+ G G G + FA + + VV ++ + V HA + LH L R++
Sbjct: 59 LVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRM--LHDNGLIDRVELQ 113
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold,
protein-cofactor-substrate complex; HET: SAH FRE; 2.70A
{Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Length = 247
Score = 33.9 bits (78), Expect = 0.010
Identities = 9/57 (15%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 81 KVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTTLHYPKLNKRIKFI 137
+++G +GY A + ++G ++ ++ E V + ++ +I F
Sbjct: 82 NTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPV--IKKAGVDHKIDFR 136
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM
MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB:
1nv9_A* 1vq1_A* 1sg9_A*
Length = 284
Score = 33.6 bits (78), Expect = 0.010
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 8/73 (10%)
Query: 67 EVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA-SNVTTL 125
LEL++ V D+G+GSG + A + V + + V A N
Sbjct: 114 LALELIRKY--GIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERH 169
Query: 126 HYPKLNKRIKFIC 138
++ R
Sbjct: 170 G---VSDRFFVRK 179
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 33.9 bits (77), Expect = 0.010
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 6/67 (8%)
Query: 71 LLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTTLHYPKL 130
L++ G VLD+G G G + G GV+ +N A +
Sbjct: 57 LIRLYTKRGDSVLDLGCGKGGDLLKYER--AGIGEYYGVDIAEVSINDARV----RARNM 110
Query: 131 NKRIKFI 137
+R K
Sbjct: 111 KRRFKVF 117
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta
with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB:
3dul_A*
Length = 223
Score = 33.7 bits (78), Expect = 0.011
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 81 KVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTTLHYPKLNKRIKFI 137
+L++G+ GY T A + G VV +E + + A + + LN R++
Sbjct: 61 NILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARS--NIERANLNDRVEVR 115
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Length = 242
Score = 33.4 bits (77), Expect = 0.014
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 81 KVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTTLHYPKLNKRIKFI 137
KVL++G+ +GY + + +G V+ + HA K +IK
Sbjct: 63 KVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPY--WREAKQEHKIKLR 117
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella
burnetii}
Length = 225
Score = 33.0 bits (76), Expect = 0.017
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 81 KVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTTLHYPKLNKRIKFI 137
KV+D+G+ +GY + K+G+++ + + A L+ +I
Sbjct: 67 KVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEY--WEKAGLSDKIGLR 121
>3ll7_A Putative methyltransferase; methytransferase, structural genomics,
MCSG, PSI-2, protein initiative; HET: MSE; 1.80A
{Porphyromonas gingivalis}
Length = 410
Score = 33.2 bits (75), Expect = 0.019
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 6/64 (9%)
Query: 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHAS-NVTTLHYPKLNKRI 134
+ G KV+D+ G G K + +E E A N+ L K +
Sbjct: 91 IREGTKVVDLTGGLGIDFIALM---SKASQGIYIERNDETAVAARHNIPLLLNE--GKDV 145
Query: 135 KFIC 138
+
Sbjct: 146 NILT 149
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 32.9 bits (75), Expect = 0.024
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 64 QHAEVLELLKDKLVPGAKVLDVGSGSG 90
Q +++ L P ++D G G G
Sbjct: 104 QAEFLMDHLGQ-AGPDDTLVDAGCGRG 129
>2h00_A Methyltransferase 10 domain containing protein; structural
genomics, structural genomics consortium, SGC; HET: SAH;
2.00A {Homo sapiens} SCOP: c.66.1.54
Length = 254
Score = 32.8 bits (74), Expect = 0.026
Identities = 9/72 (12%), Positives = 24/72 (33%), Gaps = 3/72 (4%)
Query: 66 AEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTTL 125
+++ + +D+G+G+ + + + E N+A
Sbjct: 53 EDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQ 111
Query: 126 HYPKLNKRIKFI 137
+ L+ IK +
Sbjct: 112 N--NLSDLIKVV 121
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 32.5 bits (74), Expect = 0.027
Identities = 9/66 (13%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Query: 54 GYGSIIDNPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIP 113
+H ++L L + L++G +G T + + ++ +P
Sbjct: 28 RLDDNPFERERHTQLLRLSLSSG-AVSNGLEIGCAAGAFT---EKLAPHCKRLTVIDVMP 83
Query: 114 EIVNHA 119
+ A
Sbjct: 84 RAIGRA 89
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium; 1.88A {Klebsiella pneumoniae subsp}
Length = 248
Score = 32.3 bits (74), Expect = 0.032
Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 81 KVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTTLHYPKLNKRIKFI 137
++L++G+ GY T A + +G ++ +E A L +++R+
Sbjct: 66 RILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVAREN--LQLAGVDQRVTLR 120
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.25A {Corynebacterium glutamicum}
Length = 221
Score = 31.9 bits (73), Expect = 0.039
Identities = 4/39 (10%), Positives = 14/39 (35%)
Query: 81 KVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
+ + +G + + + N ++ ++ E A
Sbjct: 59 GAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQA 97
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.039
Identities = 28/152 (18%), Positives = 44/152 (28%), Gaps = 81/152 (53%)
Query: 35 GH----FCAHNDSRKYMLAARDIGYGSIIDNPVQHAEVLELLKD--KLV-------PGAK 81
GH + A LA+ A+V+ + + ++V A
Sbjct: 1761 GHSLGEYAA--------LASL--------------ADVMSI-ESLVEVVFYRGMTMQVAV 1797
Query: 82 VLDVGSGSGYLTTCFAHMVGKNGSVVG-----------VEHIP-------EIVNH----- 118
D S Y M+ N V VE + EIVN+
Sbjct: 1798 PRDELGRSNYG------MIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQ 1851
Query: 119 -------------ASNVTTLHYPKLNKRIKFI 137
+NV L++ KL ++I I
Sbjct: 1852 QYVAAGDLRALDTVTNV--LNFIKL-QKIDII 1880
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 31.9 bits (72), Expect = 0.050
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 68 VLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNG-SVVGVEHIPEIVNHA 119
+L LL+ +VLDV G+G + + G SV V+ +++ +A
Sbjct: 49 LLGLLRQH--GCHRVLDVACGTGVDSIMLV----EEGFSVTSVDASDKMLKYA 95
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 31.6 bits (71), Expect = 0.055
Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 19/106 (17%)
Query: 54 GYGSIIDNPVQHAEVLELLKDKLV----------PGAKVLDVGSGSGYLTTCF-----AH 98
+ +++ +H + E + KL K+L +G G+G + A
Sbjct: 18 SFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQ 77
Query: 99 MVGKNGSVVGVE----HIPEIVNHASNVTTLHYPKLNKRIKFICEY 140
G + VE I + + + L K + EY
Sbjct: 78 YPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEY 123
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 31.0 bits (70), Expect = 0.071
Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 68 VLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
+ L K +L + D+G+GS ++ ++++ NG + +E P+ +
Sbjct: 30 AVTLSKLRLQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGFI 80
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Length = 313
Score = 31.5 bits (70), Expect = 0.075
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 6/77 (7%)
Query: 67 EVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA----SNV 122
E LE ++ K VLD+G G G + + +V + V ++
Sbjct: 23 EFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKG--RINKLVCTDIADVSVKQCQQRYEDM 80
Query: 123 TTLHYPKLNKRIKFICE 139
+ +FI
Sbjct: 81 KNRRDSEYIFSAEFITA 97
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine, RNA metabolism, mRNA
processing, methyltransferase, poxvirus; HET: SAH; 2.70A
{Vaccinia virus}
Length = 302
Score = 31.3 bits (70), Expect = 0.076
Identities = 13/77 (16%), Positives = 22/77 (28%), Gaps = 5/77 (6%)
Query: 67 EVLELLKDKLVPGAKVLDVGSGSG-----YLTTCFAHMVGKNGSVVGVEHIPEIVNHASN 121
KVL + G+G Y A +V + + E N ++
Sbjct: 37 MYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNS 96
Query: 122 VTTLHYPKLNKRIKFIC 138
Y K + + I
Sbjct: 97 GIKTKYYKFDYIQETIR 113
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure initiative;
1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Length = 200
Score = 31.1 bits (70), Expect = 0.079
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 68 VLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASN 121
++E+ D + G V+D G+G+G L C ++++G SV + P+ + A
Sbjct: 41 LIEIYNDGNIGGRSVIDAGTGNGIL-ACGSYLLG-AESVTAFDIDPDAIETAKR 92
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 31.0 bits (70), Expect = 0.081
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 60 DNPVQHAEV--LELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVN 117
D + + + L L G + D+G GSG ++ + G+ + +E + +
Sbjct: 35 DGQITKSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLAGGR---AITIEPRADRIE 91
Query: 118 HA 119
+
Sbjct: 92 NI 93
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 30.8 bits (69), Expect = 0.12
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 75 KLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTTLHYPKLNKRI 134
+ VLDVG G+G L + FA G V+GV+ + + KL I
Sbjct: 61 HIFKDKVVLDVGCGTGIL-SMFAAKAG-AKKVLGVDQSEILYQAMDIIRL---NKLEDTI 115
Query: 135 KFI 137
I
Sbjct: 116 TLI 118
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding
motif, RNA binding protein; HET: SAM; 2.90A
{Archaeoglobus fulgidus} SCOP: c.66.1.3
Length = 210
Score = 30.3 bits (68), Expect = 0.14
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 65 HAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIV 116
A +L+ + KL +VL +G+ SG + A +V G + VE+ +
Sbjct: 44 AAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPF 94
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 30.2 bits (68), Expect = 0.14
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 5/46 (10%)
Query: 75 KLVPGAKVLDVGSGSGYLTTCFAHMVGKNG-SVVGVEHIPEIVNHA 119
+P K+L + G G A G V V+ + A
Sbjct: 26 NQIPQGKILCLAEGEGRNACFLA----SLGYEVTAVDQSSVGLAKA 67
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral
enzyme structure; HET: SFG; 1.90A {Wesselsbron virus}
PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Length = 300
Score = 30.3 bits (68), Expect = 0.16
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 73 KDKLVPGAKVLDVGSGSG---YLTTCFAHMVGKNGSVVGVEHIPEIVNHAS 120
+ L +VLD+G G G Y ++ G +G+E + ++ +
Sbjct: 76 RGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQT 126
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 30.4 bits (68), Expect = 0.17
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 8/85 (9%)
Query: 54 GYGSIIDNPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIP 113
G + D ++ + + ++ LD G+G G +T + + +E +
Sbjct: 70 GMDHVHDVDIEGSRNF-IASLPGHGTSRALDCGAGIGRITKNLLTKLYA--TTDLLEPVK 126
Query: 114 EIVNHASNVTTLHYPKLNKRIKFIC 138
++ A KFI
Sbjct: 127 HMLEEAK-----RELAGMPVGKFIL 146
>2b3t_A Protein methyltransferase HEMK; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Length = 276
Score = 29.8 bits (68), Expect = 0.27
Identities = 7/24 (29%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Query: 67 EVLELLKDKLVPGAKVLDVGSGSG 90
+ L L ++ ++LD+G+G+G
Sbjct: 101 QALARLPEQ---PCRILDLGTGTG 121
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Escherichia coli} SCOP: c.66.1.20
Length = 207
Score = 29.6 bits (67), Expect = 0.29
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 75 KLVPGAKVLDVGSGSG 90
+ G + +DVG+G G
Sbjct: 62 PYLQGERFIDVGTGPG 77
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural
genomics, riken structural genomics/proteomics in RSGI;
HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Length = 392
Score = 29.4 bits (65), Expect = 0.33
Identities = 14/62 (22%), Positives = 17/62 (27%), Gaps = 6/62 (9%)
Query: 61 NPVQHAE------VLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPE 114
NP LE L KL KV D S SG F + +
Sbjct: 29 NPRMRVNRDLAVLGLEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSK 88
Query: 115 IV 116
+
Sbjct: 89 AI 90
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine
methyltransferase, methylation; HET: SAH; 2.61A
{Arabidopsis thaliana}
Length = 376
Score = 29.4 bits (65), Expect = 0.34
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 75 KLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTTLHYPKLNKRI 134
G VLDVG+GSG L A + V VE + +HA + + L+ +
Sbjct: 60 HHFEGKTVLDVGTGSGILAIWSAQAGAR--KVYAVEATK-MADHARALVKAN--NLDHIV 114
Query: 135 KFI 137
+ I
Sbjct: 115 EVI 117
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 29.4 bits (65), Expect = 0.36
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 82 VLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHAS 120
+D+G+G G A N +G++ + E + S
Sbjct: 28 HIDLGTGDGRNIYKLAINDQ-NTFYIGIDPVKENLFDIS 65
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding,
tRNA methyltransferase, S-adenosyl-L-methionine, iron,
4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi}
PDB: 2vs1_A*
Length = 425
Score = 29.4 bits (67), Expect = 0.37
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 14/64 (21%)
Query: 61 NPVQHAEVL-----ELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEI 115
N Q A L EL++ + K+LD+ SG G A V G +
Sbjct: 274 NSYQ-AVNLVRKVSELVEGE-----KILDMYSGVGTFGIYLAKRGFN---VKGFDSNEFA 324
Query: 116 VNHA 119
+ A
Sbjct: 325 IEMA 328
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase,
transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Length = 232
Score = 28.8 bits (65), Expect = 0.51
Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 81 KVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
+L++G+ GY + FA + + V +E ++ +A
Sbjct: 74 NILEIGTAIGYSSMQFASI-SDDIHVTTIERNETMIQYA 111
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 28.8 bits (64), Expect = 0.52
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 68 VLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGK 102
+ E L + V G +VLD+G+G G LT A M +
Sbjct: 223 LQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAE 257
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain,
beta-barrel, mixed alpha-beta, hexamer; 2.90A
{Saccharomyces cerevisiae} SCOP: c.66.1.6
Length = 328
Score = 28.9 bits (64), Expect = 0.58
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 75 KLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTTLHYPKLNKRI 134
L VLDVG G+G L + FA G V+GV+ I V + +I
Sbjct: 35 DLFKDKIVLDVGCGTGIL-SMFAAKHG-AKHVIGVDMSSIIEMAKELV---ELNGFSDKI 89
Query: 135 KFI 137
+
Sbjct: 90 TLL 92
>1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics
hypothetical protein, structure 2 function project, S2F,
TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP:
c.66.1.14
Length = 244
Score = 28.7 bits (63), Expect = 0.58
Identities = 10/77 (12%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 65 HAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFA-HMVGKNGSVVGVEHIPEIVNHASNVT 123
+ L + + + V D+G G T ++ N ++G+++ +V
Sbjct: 45 ITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQ-- 102
Query: 124 TLHYPKLNKRIKFICEY 140
+ ++ +C
Sbjct: 103 HIAAYHSEIPVEILCND 119
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target
base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET:
5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27
d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A*
2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Length = 421
Score = 28.8 bits (64), Expect = 0.63
Identities = 11/49 (22%), Positives = 17/49 (34%)
Query: 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTTLH 126
G +VL+ G F G VGVE P+ ++ +
Sbjct: 39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGIL 87
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 28.6 bits (64), Expect = 0.70
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 65 HAEVLELLKDKLVPGAKVLDV 85
VL L + G VL +
Sbjct: 35 ANRVLRSLVEASSSGVSVLSL 55
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 28.7 bits (64), Expect = 0.73
Identities = 4/21 (19%), Positives = 12/21 (57%)
Query: 65 HAEVLELLKDKLVPGAKVLDV 85
H +V + + + PG ++++
Sbjct: 176 HRQVRKYVMSWIKPGMTMIEI 196
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 28.4 bits (63), Expect = 0.73
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 9/66 (13%)
Query: 75 KLVPGAKVLDVGSGSGYLTTCFAHMVGKNG-SVVGVEHIPEIVNHASNVTTLHYPKLNKR 133
K++ KVLD+G G G + + G V +H + + K N
Sbjct: 117 KIISPCKVLDLGCGQGRNSLYLS----LLGYDVTSWDHNENSIAFLNE----TKEKENLN 168
Query: 134 IKFICE 139
I
Sbjct: 169 ISTALY 174
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, regulator,
mRNA processing; 2.55A {Rattus norvegicus}
Length = 480
Score = 28.6 bits (63), Expect = 0.73
Identities = 25/150 (16%), Positives = 45/150 (30%), Gaps = 23/150 (15%)
Query: 3 GYKIFMVPTDYIVEIDSIKSPRVIDAMIHIDRGHFCAHNDSRKYMLAARDIGYGSIIDNP 62
+ I + +++ + ++ RGH + + + + Y
Sbjct: 71 SFIITLGCNSVLIQFATPHDFCSFYNILKTCRGHTLERSVFSERTEESSAVQYFQFYGYL 130
Query: 63 VQHAEVLELLKDK---------------LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVV 107
Q +++D VLDVG GSG L+ A +
Sbjct: 131 SQQ---QNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQ--AGARKIY 185
Query: 108 GVEHIPEIVNHASNVTTLHYPKLNKRIKFI 137
VE + HA + + L RI I
Sbjct: 186 AVEAST-MAQHAEVLVKSN--NLTDRIVVI 212
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific;
structural genomics, PSI-biology; 2.55A
{Alicyclobacillus acidocaldarius subsp}
Length = 215
Score = 28.3 bits (64), Expect = 0.77
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 67 EVLELLKDKLVPGAKVLDVGSGSG 90
E + LK G +V+DVG+GSG
Sbjct: 20 EAIRFLKRM-PSGTRVIDVGTGSG 42
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Length = 354
Score = 28.2 bits (63), Expect = 0.81
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 78 PGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
PG +VLD +GSG + A +G V + + + A
Sbjct: 203 PGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLA 244
>2nw5_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2,
protein structure initiative; 2.18A {Encephalitozoon
cuniculi} PDB: 3cmk_A* 3d0d_A* 3fm3_A 3fmq_A* 3fmr_A*
Length = 360
Score = 28.2 bits (63), Expect = 0.86
Identities = 4/21 (19%), Positives = 10/21 (47%)
Query: 65 HAEVLELLKDKLVPGAKVLDV 85
H ++ + PG +L++
Sbjct: 57 HRRARYRVQSIVRPGITLLEI 77
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation,
transferase transferase inhibitor complex; HET: SAH;
1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A*
3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A*
1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A*
3s68_A* 2zlb_A 2zth_A* ...
Length = 221
Score = 28.0 bits (63), Expect = 0.87
Identities = 10/57 (17%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 81 KVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTTLHYPKLNKRIKFI 137
VL++G+ GY A ++ ++ +E P+ + L++ L ++ +
Sbjct: 61 LVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQM--LNFAGLQDKVTIL 115
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Length = 349
Score = 28.1 bits (62), Expect = 0.99
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 75 KLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNV 122
L VLDVGSG+G L FA G V+G+E V
Sbjct: 63 HLFKDKVVLDVGSGTGIL-CMFAAKAGAR-KVIGIECSSISDYAVKIV 108
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation,
transferase; HET: SAH TYD; 1.40A {Micromonospora
chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A*
4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Length = 416
Score = 28.1 bits (63), Expect = 1.0
Identities = 13/87 (14%), Positives = 25/87 (28%), Gaps = 16/87 (18%)
Query: 57 SIIDNPVQHAE--VLELLKD-KLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIP 113
S +H + L P ++++G G + +G E P
Sbjct: 83 SGSSVMREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTI---QEAGVRHLGFE--P 137
Query: 114 EIVNHASNVTTLHYPKLNKRIKFICEY 140
+S V K I+ ++
Sbjct: 138 -----SSGVAAKAR---EKGIRVRTDF 156
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP:
c.66.1.56
Length = 409
Score = 28.1 bits (62), Expect = 1.1
Identities = 12/89 (13%), Positives = 23/89 (25%), Gaps = 3/89 (3%)
Query: 51 RDIGYGSIIDNPVQHAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFA-HMVGKNGSVVGV 109
+ Y ++ P + K++D G+ G GK V +
Sbjct: 200 CEPEYYHEVERPYST-LYFRSGLLRFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMI 258
Query: 110 EHIPEIVNH-ASNVTTLHYPKLNKRIKFI 137
E + + + RI
Sbjct: 259 EPDRINLQTLQNVLRRYTDTNFASRITVH 287
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus
furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A
1xgo_A 1wkm_A 2dfi_A
Length = 295
Score = 28.0 bits (63), Expect = 1.1
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 65 HAEVLELLKDKLVPGAKVLDV 85
+V E PG +L++
Sbjct: 13 AKKVREKAIKLARPGMLLLEL 33
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification,
iron-sulfur cluster, RNA processing; 1.95A {Escherichia
coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Length = 433
Score = 27.5 bits (62), Expect = 1.4
Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 20/77 (25%)
Query: 61 NPVQHAEVL-----ELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEI 115
N + + E L + P +VLD+ G G T A VVGVE +P +
Sbjct: 267 NAGV-NQKMVARALEWLD--VQPEDRVLDLFCGMGNFTLPLATQAAS---VVGVEGVPAL 320
Query: 116 V---------NHASNVT 123
V N NVT
Sbjct: 321 VEKGQQNARLNGLQNVT 337
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA
PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Length = 375
Score = 27.8 bits (61), Expect = 1.4
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 76 LVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIP 113
L G +D+G+ G T +V +N V V++ P
Sbjct: 209 LANGMWAVDLGACPGGWTYQ---LVKRNMWVYSVDNGP 243
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 27.3 bits (61), Expect = 1.4
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 70 ELLKDKL--VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVE 110
++L + + +LD+G G G + + + S +
Sbjct: 42 KILVENVVVDKDDDILDLGCGYGVIG---IALADEVKSTTMAD 81
>3qdl_A Oxygen-insensitive NADPH nitroreductase; oxidoreductase; HET: FMN;
2.00A {Helicobacter pylori}
Length = 210
Score = 27.4 bits (61), Expect = 1.4
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 47 MLAARDIGYGS-IID--NPVQHAEVLELLKDKLVP 78
+ +G S II +P++ EVLE +K
Sbjct: 148 CMGVSLMGLDSCIIGGFDPLKVGEVLEERINKPKI 182
>2pag_A Hypothetical protein; nysgx, target 10412I, novel fold,
structural genomics, PSI-2 structure initiative; 1.60A
{Pseudomonas syringae PV} SCOP: d.369.1.1
Length = 135
Score = 27.0 bits (59), Expect = 1.8
Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 40 HNDSRKYMLAARDIGYGSI----IDNPVQHAEVLELLKD 74
++++L D+ YGS+ + +P H + E+
Sbjct: 39 PFVFKEFLLTVSDVVYGSLEPVTVTDPQSHTYLPEVCAT 77
>3ge6_A Nitroreductase; structural GENO joint center for structural
genomics, JCSG, protein structu initiative, PSI-2,
oxidoreductase; HET: FMN; 1.85A {Exiguobacterium
sibiricum 255-15}
Length = 212
Score = 26.9 bits (60), Expect = 2.0
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 47 MLAARDIGYGS-IID--NPVQHAEVLELLKDKLVP 78
ML AR GY + I Q AE + KD+ VP
Sbjct: 150 MLVARAHGYDTNPIGGYEKDQIAEAFGMEKDRYVP 184
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 27.3 bits (61), Expect = 2.1
Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 68 VLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNG-SVVGVEHIPEIVNHASNVTTLH 126
+++ K G +V+ + + + ++ A + G V V + TL
Sbjct: 517 PEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA---NYMHFTLE 573
Query: 127 YPKLNKRIK 135
YP + +R+
Sbjct: 574 YPNMMRRLH 582
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 27.2 bits (60), Expect = 2.3
Identities = 4/25 (16%), Positives = 11/25 (44%)
Query: 78 PGAKVLDVGSGSGYLTTCFAHMVGK 102
+++D+G G+G + +
Sbjct: 222 LEGEIVDLGCGNGVIGLTLLDKNPQ 246
>3gbh_A NAD(P)H-flavin oxidoreductase; putative NAD(P)H:FMN oxidoreductase,
structural genomics, JO center for structural genomics;
HET: MSE FMN PGE; 2.00A {Staphylococcus epidermidis atcc
12228}
Length = 213
Score = 26.9 bits (60), Expect = 2.3
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 47 MLAARDIGYGS-IID--NPVQHAEVLELLKDKLVP 78
ML A+ GY + I + A+++ D+ VP
Sbjct: 151 MLTAKAHGYDTNPIGGFDKENIADIIGYDSDRYVP 185
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 26.9 bits (60), Expect = 2.4
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 62 PVQH-AEVLELLKDKLVPGAKVLDVGS 87
P+ E +E LK L + D+ S
Sbjct: 74 PINLTLETIERLKPYLTENMLLADLTS 100
>1nox_A NADH oxidase; flavoenzyme, flavoprotein FMN, oxidoreductase,
thermophIle; HET: FMN; 1.59A {Thermus thermophilus}
SCOP: d.90.1.1
Length = 205
Score = 26.8 bits (60), Expect = 2.5
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 47 MLAARDIGYGS-IID--NPVQHAEVLEL 71
+L G GS + +P + +L L
Sbjct: 144 LLLLEAYGLGSVPMLGFDPERVRAILGL 171
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification;
HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A*
3b3g_A 2v74_B* 2v7e_A
Length = 348
Score = 26.9 bits (59), Expect = 2.5
Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 75 KLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTTLHYPKLNKRI 134
VLDVG GSG L+ A + VE + HA + + L RI
Sbjct: 47 TDFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSN--NLTDRI 101
Query: 135 KFI 137
I
Sbjct: 102 VVI 104
>1bkj_A NADPH-flavin oxidoreductase; luminescence, flavoprotein; HET: FMN;
1.80A {Vibrio harveyi} SCOP: d.90.1.1 PDB: 2bkj_A*
Length = 240
Score = 26.5 bits (59), Expect = 2.7
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Query: 47 MLAARDIGYGS-----IIDNPVQHAEVLEL 71
+LAA +G G + ++ Q E+L L
Sbjct: 116 LLAAESMGLGGVYIGGLRNSAAQVDELLGL 145
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand
complex, cytoplasm, lipid synthesis, methyltransferase;
HET: D22; 2.39A {Mycobacterium tuberculosis} PDB:
1kpi_A*
Length = 302
Score = 26.4 bits (59), Expect = 3.0
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 69 LELLKDKLV--PGAKVLDVGSGSGYLTTCFAHMVGKNG-SVVGV 109
+L DKL PG +LD+G G G H V + +V+G+
Sbjct: 61 RKLALDKLNLEPGMTLLDIGCGWGSTM---RHAVAEYDVNVIGL 101
>3n2s_A NADPH-dependent nitro/flavin reductase; alpga-beta-alpha sandwich,
oxidoreductase; HET: FMN; 1.95A {Bacillus subtilis}
Length = 249
Score = 26.6 bits (59), Expect = 3.0
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
Query: 47 MLAARDIGYGS-----IIDNPVQHAEVLEL 71
+AA +G G I + + EVL+
Sbjct: 122 SIAAESMGLGICYIGGIRNELDKVTEVLQT 151
>1ywq_A Nitroreductase family protein; FMN, structu genomics, PSI, protein
structure initiative, midwest center structural
genomics, MCSG; HET: FMN; 2.30A {Bacillus cereus atcc
14579} SCOP: d.90.1.1
Length = 200
Score = 26.3 bits (58), Expect = 3.0
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 47 MLAARDIGYGSIIDNPVQHAEVLELLK 73
+L+A IG NP+ AEV E
Sbjct: 139 LLSAEGIGASLQHYNPIVDAEVKETWN 165
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure
initiative, NEW research center for structural genomics,
nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Length = 233
Score = 26.5 bits (59), Expect = 3.2
Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 81 KVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHASNVTTLHYPKLNKRIKFI 137
++L++G+ GY A + ++V +E A + L RI+ +
Sbjct: 57 RILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKH--VKALGLESRIELL 110
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1;
mixed alpha beta fold, structural genomics, PSI; HET:
SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP:
c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Length = 287
Score = 26.4 bits (59), Expect = 3.3
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 69 LELLKDKLV--PGAKVLDVGSGSGYLTTCFAHMVGKNG-SVVGV 109
++L KL PG +LDVG G G V K +VVG+
Sbjct: 53 IDLALGKLGLQPGMTLLDVGCGWGATM---MRAVEKYDVNVVGL 93
>3eof_A Putative oxidoreductase; YP_213212.1, structural genomics, J center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: FMN; 1.99A {Bacteroides fragilis nctc 9343}
Length = 248
Score = 26.2 bits (58), Expect = 4.0
Identities = 7/30 (23%), Positives = 9/30 (30%), Gaps = 5/30 (16%)
Query: 47 MLAARDIGYGS-----IIDNPVQHAEVLEL 71
A + G G NP + L L
Sbjct: 118 CTLAEEAGLGICYLGTTTYNPQMIIDALHL 147
>3e39_A Putative nitroreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE FMN PGE; 1.70A {Desulfovibrio
desulfuricans subsp}
Length = 178
Score = 26.0 bits (58), Expect = 4.2
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 47 MLAARDIGYGS-----IIDNPVQHAEVLELLKDKLVP 78
+LAA + G+ II+ L L +L
Sbjct: 109 LLAAHALQLGAVWLGEIINQAATLLPALALDPARLSF 145
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent
methyltransferase fold, trans; HET: SAM; 2.00A
{Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB:
2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Length = 318
Score = 26.0 bits (58), Expect = 4.3
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 69 LELLKDKL--VPGAKVLDVGSGSGYL 92
++L DKL PG +LD+G G G
Sbjct: 79 VDLNLDKLDLKPGMTLLDIGCGWGTT 104
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural
genomics, protein structure initiative, pyrococc
furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Length = 230
Score = 26.0 bits (58), Expect = 4.3
Identities = 5/23 (21%), Positives = 9/23 (39%), Gaps = 3/23 (13%)
Query: 68 VLELLKDKLVPGAKVLDVGSGSG 90
L+ G L++G+G
Sbjct: 48 FLKTFLR---GGEVALEIGTGHT 67
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 25.8 bits (57), Expect = 4.9
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 70 ELLKDKL--VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVE 110
+LL L KVLDVG G+G L + + +
Sbjct: 186 QLLLSTLTPHTKGKVLDVGCGAGVL-SVAFARHSPKIRLTLCD 227
>1f5v_A Oxygen-insensitive NADPH nitroreductase; flavoprotein,
oxidoreduction, nitrocompound, oxidoreductase; HET: FMN;
1.70A {Escherichia coli} SCOP: d.90.1.1
Length = 240
Score = 25.7 bits (57), Expect = 5.0
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Query: 47 MLAARDIGYGS-----IIDNPVQHAEVLEL 71
++AA +G G + +N ++L+L
Sbjct: 116 LIAAESLGLGGVYIGGLRNNIEAVTKLLKL 145
>1zch_A Hypothetical oxidoreductase YCND; nitroreductase, NADH-oxidase;
HET: FMN; 1.85A {Bacillus subtilis} SCOP: d.90.1.1
Length = 255
Score = 25.8 bits (57), Expect = 5.1
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Query: 47 MLAARDIGYGS-----IIDNPVQHAEVLEL 71
AA +G G+ + NP + E+LEL
Sbjct: 122 TAAAESLGLGTVPIGAVRGNPQELIELLEL 151
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative,
structural genomics, methyltransferase fold, PSI; 1.60A
{Bacillus subtilis} SCOP: c.66.1.20
Length = 240
Score = 25.8 bits (57), Expect = 5.2
Identities = 5/23 (21%), Positives = 9/23 (39%), Gaps = 2/23 (8%)
Query: 68 VLELLKDKLVPGAKVLDVGSGSG 90
+ + DVG+G+G
Sbjct: 62 AAFYVDFN--QVNTICDVGAGAG 82
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes}
SCOP: c.66.1.45
Length = 344
Score = 25.8 bits (57), Expect = 5.6
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 68 VLELLKDKLVPGAKVLDVGSGSG-YLTTCFAHM---VGKNGSVVGVEHIPEIVNHASNVT 123
+ ++++ K +LD G+ LTT + + GV+ +++ A
Sbjct: 122 LEKVIQKK--KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGA 179
Query: 124 TLHYPKLN 131
L K+
Sbjct: 180 DLQRQKMT 187
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase,
kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae}
SCOP: d.144.1.6
Length = 264
Score = 25.7 bits (56), Expect = 5.7
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 66 AEVLELLKDKLVPGAKVLDVGSGSGY 91
A L L VP A VLDV + +G
Sbjct: 64 AARLSWLATTGVPCAAVLDVVTEAGR 89
>3gr3_A Nitroreductase; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2,
flavoprotein; HET: MSE FMN UNL; 1.45A {Bartonella
henselae str}
Length = 230
Score = 25.6 bits (56), Expect = 6.0
Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 12/75 (16%)
Query: 1 MVGYKIFMVPTDYIVEIDSIKSPRVIDAMIHIDRGHFCAHNDSRKYMLAARDIGYGSII- 59
+ + P + ID +D G F MLAAR G +
Sbjct: 123 AKNFLFYGAPVGLLFTIDHDMEMGS-----WLDLGMFMQT-----IMLAARGFGLDTCAQ 172
Query: 60 -DNPVQHAEVLELLK 73
H ++ LL
Sbjct: 173 AAFADYHKQIRSLLS 187
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA
crystallography structure, oxidoreductase; HET: OMT
NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Length = 279
Score = 25.6 bits (57), Expect = 6.5
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 62 PVQH-AEVLELLKDKLVPGAKVLDVGS 87
P+Q LE L L P A V DV S
Sbjct: 66 PIQLILPTLEKLIPHLSPTAIVTDVAS 92
>2r01_A Nitroreductase family protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE FMN; 1.15A {Chlorobium tepidum tls}
Length = 210
Score = 25.4 bits (56), Expect = 6.8
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 47 MLAARDIGYGSIIDNPVQHAEVLELLK--DKLVPGAKVLDVG 86
ML A + G I + ++ L D V+ +G
Sbjct: 122 MLGAAEKELGGCIVAAIDRERLMASLGIPDAWTVLL-VIALG 162
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA
methyltransferase, translation, cytoplasm, rRNA
processing; HET: HIC SAM AMP; 1.50A {Thermus
thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Length = 249
Score = 25.5 bits (56), Expect = 7.3
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 76 LVPGAKVLDVGSGSG 90
+VLD+G+G+G
Sbjct: 78 WQGPLRVLDLGTGAG 92
>3ur8_A Glucan endo-1,3-beta-D-glucosidase; glucoside hydrolase, GH17
family, pathogenesis-related class protein (PR-2), TIM
barrel; 1.26A {Solanum tuberosum} PDB: 3ur7_A
Length = 323
Score = 25.6 bits (55), Expect = 7.3
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 53 IGYGSIIDNPVQHAEVLELLKDKLVPGAKVLD 84
+ YG I +N +V++L + ++
Sbjct: 5 VCYGKIANNLPSDQDVIKLYNANNIKKMRIYY 36
>3em5_A Beta-1,3-glucanase; glycoprotein, rossmann fold,
(beta-alpha)8-TIM-barrel, glyco hydrolase, allergen;
HET: NAG FUC MAN; 2.50A {Hevea brasiliensis} PDB:
3f55_A*
Length = 316
Score = 25.6 bits (55), Expect = 7.5
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 52 DIG--YGSIIDNPVQHAEVLELLKDKLVPGAKVLD 84
++G YG +N +EV+ L K + ++ D
Sbjct: 1 EVGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYD 35
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine,
methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A
{Escherichia coli}
Length = 369
Score = 25.3 bits (56), Expect = 7.7
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 10/63 (15%)
Query: 61 NPVQ----HAEVLELLKDKLVPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIV 116
N L++ K +L++ G+G + A + V+ E V
Sbjct: 195 NAAMNIQMLEWALDVTKGS---KGDLLELYCGNGNFSLALARNFDR---VLATEIAKPSV 248
Query: 117 NHA 119
A
Sbjct: 249 AAA 251
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet,
methyltransferase fold, structura genomics, transferase;
HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Length = 207
Score = 25.0 bits (54), Expect = 8.2
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 77 VPGAKVLDVGSGSGYLTTCFAHMVGKNGSVVGVEHIPEIVNHA 119
+ G V D+G+G+G L + A ++G V+ VE E V+
Sbjct: 48 IEGKVVADLGAGTGVL-SYGALLLG-AKEVICVEVDKEAVDVL 88
>3gag_A Putative NADH dehydrogenase, NADPH nitroreductase; FMN-dependent
nitroreductase-like fold, structural genomics; HET: MSE
FMN; 1.70A {Streptococcus mutans}
Length = 206
Score = 24.9 bits (55), Expect = 8.4
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 47 MLAARDIGYGSIIDNPVQHAEVLELLK 73
M R GY S+ V + L
Sbjct: 144 MQVVRVYGYDSVPMRGVDFDAIKTYLD 170
>2b67_A COG0778: nitroreductase; alpha-beta sandwich, FMN binding pocket,
structural genomics protein structure initiative; HET:
MSE FMN; 2.05A {Streptococcus pneumoniae} SCOP: d.90.1.1
Length = 204
Score = 24.9 bits (55), Expect = 9.0
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 47 MLAARDIGYGS 57
+LA D G GS
Sbjct: 143 VLALTDQGIGS 153
>2yxt_A Pyridoxal kinase; beta sheet with alpha helix, metal ION,
transferase; 2.00A {Homo sapiens} PDB: 2yxu_A* 3kbi_A*
3keu_A* 4en4_A* 4eoh_A* 2f7k_A 3fhy_A* 3fhx_A* 2ajp_A*
1lhp_A 1lhr_A* 1rft_A* 1rfu_A* 1rfv_A* 1ygj_A* 1ygk_A*
1yhj_A*
Length = 312
Score = 25.2 bits (55), Expect = 9.1
Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 14/81 (17%)
Query: 12 DYIVEIDSIK-----SPRVIDAMIHIDRGHFCAHNDSRKYM----LAARDIGYGSIIDNP 62
+ + + D + + ++ I + N Y+ L + G GS+
Sbjct: 72 NNMNKYDYVLTGYTRDKSFLAMVVDIVQ-ELKQQNPRLVYVCDPVLGDKWDGEGSMYVPE 130
Query: 63 VQHAEVLELLKDKLVPGAKVL 83
++L + K+K+VP A ++
Sbjct: 131 ----DLLPVYKEKVVPLADII 147
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 25.0 bits (55), Expect = 9.7
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 67 EVLELLKDKLVPGAKVLDVGSGSGYLTTCFA 97
+ +L+ + + KVLD+ + G A
Sbjct: 154 LIAQLVNENKIEPLKVLDISASHGLFGIAVA 184
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.423
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,235,547
Number of extensions: 131166
Number of successful extensions: 592
Number of sequences better than 10.0: 1
Number of HSP's gapped: 570
Number of HSP's successfully gapped: 210
Length of query: 140
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 56
Effective length of database: 4,356,429
Effective search space: 243960024
Effective search space used: 243960024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.3 bits)