Query psy7828
Match_columns 503
No_of_seqs 211 out of 1221
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 19:55:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7828.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7828hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qye_A TBC1 domain family memb 100.0 7.2E-41 2.5E-45 343.1 21.3 244 210-493 29-292 (331)
2 2qfz_A TBC1 domain family memb 100.0 7.7E-41 2.6E-45 344.8 21.3 251 205-494 20-316 (345)
3 2qq8_A TBC1 domain family memb 100.0 1E-40 3.5E-45 342.9 19.9 246 210-493 20-295 (334)
4 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 2.9E-40 1E-44 335.8 20.5 230 222-492 22-256 (310)
5 1fkm_A Protein (GYP1P), ORF YO 100.0 9.7E-40 3.3E-44 343.0 24.0 248 208-493 5-361 (396)
6 4hl4_A TBC1 domain family memb 100.0 1.1E-37 3.6E-42 314.6 16.0 246 204-492 13-271 (292)
7 3qwl_A TBC1 domain family memb 100.0 3.9E-35 1.3E-39 296.3 22.3 233 212-494 27-271 (294)
8 4dhx_B Enhancer of yellow 2 tr 31.6 54 0.0019 27.1 4.5 41 20-62 18-58 (101)
9 3q94_A Fructose-bisphosphate a 24.8 62 0.0021 31.8 4.4 78 15-94 197-281 (288)
10 1rvg_A Fructose-1,6-bisphospha 22.6 50 0.0017 32.8 3.2 66 27-94 233-298 (305)
11 3mhs_B Protein SUS1; multi-pro 21.1 1.1E+02 0.0037 25.0 4.4 40 20-61 14-53 (96)
12 3n9r_A Fructose-bisphosphate a 20.2 59 0.002 32.3 3.2 65 27-93 235-299 (307)
No 1
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=7.2e-41 Score=343.07 Aligned_cols=244 Identities=17% Similarity=0.223 Sum_probs=201.6
Q ss_pred HHHHHHHHhcCC-------ChHHHHhhhhcCCCcchHHHHHHHhhCCCCC--------CCChHHHHHHHHcccccchHHH
Q psy7828 210 RITLGEKVLNSK-------HAPVAQEFLKKGSPRCLRGKIWCQVLGSEAT--------PDNSKYFEQLKSSVLTYDLLID 274 (503)
Q Consensus 210 r~~~~~~vl~~~-------~~~~l~~l~r~GIP~~lR~~VW~~LLg~~~~--------~~~~~~Ye~L~~~~~~~~~~~d 274 (503)
+.+.+++++... +..++++++++|||+++|+.||+.++|+.+. ....+.|++|.++... ..
T Consensus 29 ~~~~W~~~l~~~~~~~~~~~~~~l~~~~~~GIP~~lR~~vW~~Llg~~~~~~~~~~~~~~~~~~Y~~l~~~~~~----~~ 104 (331)
T 3qye_A 29 VTTVWEKMLSTPGRSKIKFDMEKMHSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPSKQQPKDVPYKELLKQLTS----QQ 104 (331)
T ss_dssp HHHHHHHHHTCTTGGGCCCCHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHCCCCSSSCCCCCCHHHHTTSCCT----TH
T ss_pred HHHHHHHHhccCCCCcccCCHHHHHHHHHcCCCHHHHHHHHHHHhCcchhhhcchhhhhhchHHHHHHHHhcCC----ch
Confidence 445556666543 3678999999999999999999999998541 1234679888775432 24
Q ss_pred HHhhhccCCcCCCCCCCc----hhhHHHHHHHHhhccchhhhhhhhccCCCCCCccccccccccccccccCCCCCccccc
Q psy7828 275 KLTIKDVQLTASNDDQYF----VFEDLLYQILLCFSRDTEILSIFEHSSASPLYGPLKNKNTNTENLVVYPPSGIIPFHG 350 (503)
Q Consensus 275 ~lI~kDv~RT~~~d~~yf----~f~d~l~qvl~afsrd~~vl~~i~~~s~~~~~~~l~~~~~~~~~~~~~p~~G~i~~qG 350 (503)
++|.+|++||++++..|. +.++.+.+|+.||+.. .|..| ||||
T Consensus 105 ~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~ay~~~-------------------------------~p~ig--Y~QG 151 (331)
T 3qye_A 105 HAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLL-------------------------------DQEVG--YCQG 151 (331)
T ss_dssp HHHHHHHTTSSTTSTTTCSTTCHHHHHHHHHHHHHHHH-------------------------------CTTTS--SCTT
T ss_pred hHHHHhhcccCCCchhhcCCCcccHHHHHHHHHHHHHH-------------------------------CCCcc--cccc
Confidence 689999999998877653 3455677777777531 23346 8999
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHHHhhcccCCCCcChHhHHHHHHHHHHHHHhhchHHHHHHHhcCCCcccchHHHH
Q psy7828 351 FTMYATPFCYLYDDVISLYFTFRAFYLRYFYHLHQVSSNEQGILSLCILFHRLLQRYEPQLFLHFKTIHIHPIKIVFKWI 430 (503)
Q Consensus 351 m~~iaapLl~l~~dEedaFw~f~~L~~~~~~~l~~~~~~~~Gi~~l~~~fe~LL~~~~P~L~~HL~~~~i~~~~~a~~Wf 430 (503)
|+.+||+|+++ .+|++|||||+.+|+++..+..|..+. +|+...+.+|+.||+.++|+|++||++.|+.+..|+++||
T Consensus 152 m~~i~a~ll~~-~~E~~aF~~l~~l~~~~~~~~~~~~~~-~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~ 229 (331)
T 3qye_A 152 LSFVAGILLLH-MSEEEAFKMLKFLMFDMGLRKQYRPDM-IILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWF 229 (331)
T ss_dssp HHHHHHHHHTT-SCHHHHHHHHHHHHTTTCGGGGGSTTC-HHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTSHHHH
T ss_pred HHHHHHHHHHH-hhHHHHHHHHHHHHHhcCchhcCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 99999988765 579999999999998874444565554 7888889999999999999999999999999999999999
Q ss_pred HHHhcCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHHHhHHHhhCCCCHHHHHHHHhc-ccCC
Q psy7828 431 MRCFSGHLPPDQILYLWDLILAYDSLEIISILAVAILSFRRENLMQVDTLQNVEVGYEI-LYGR 493 (503)
Q Consensus 431 ltlFs~~lp~~~vLrIWD~~l~~~~~~il~~vAlAIL~~~~~~LL~~~~~~~i~~~L~~-ls~~ 493 (503)
+|+|++.+|++.++||||.||+ +|..+++++|+|||+.+++.||++++.++++.+|++ ++++
T Consensus 230 l~lF~~~lp~~~~lrlwD~~l~-~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~~ 292 (331)
T 3qye_A 230 LTMFASQFPLGFVARVFDMIFL-QGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNL 292 (331)
T ss_dssp HSTTTTTSCHHHHHHHHHHHHH-HCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTCC
T ss_pred HHHhhhhCCHHHHHHHHHHHHH-CCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCC
Confidence 9999999999999999999999 667899999999999999999999999999999987 5543
No 2
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=7.7e-41 Score=344.83 Aligned_cols=251 Identities=15% Similarity=0.216 Sum_probs=204.4
Q ss_pred hhHHHHHHHHHHHhcCC--ChHHHHhhhhcCCCcchHHHHHHHhhCCCCCCC---------ChHHHHHHHHcccc-----
Q psy7828 205 ALESERITLGEKVLNSK--HAPVAQEFLKKGSPRCLRGKIWCQVLGSEATPD---------NSKYFEQLKSSVLT----- 268 (503)
Q Consensus 205 ~~~~er~~~~~~vl~~~--~~~~l~~l~r~GIP~~lR~~VW~~LLg~~~~~~---------~~~~Ye~L~~~~~~----- 268 (503)
.-+.+|.+.+++++++. +..++++++++|||+++|+.||+.++|+.+... .++.|+.|+++...
T Consensus 20 ~~e~~r~~kw~~~l~~~~~d~~~Lr~l~~~GiP~~~R~~vW~~llg~~p~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~ 99 (345)
T 2qfz_A 20 EREASRLDKFKQLLAGPNTDLEELRRLSWSGIPKPVRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYDSRNDE 99 (345)
T ss_dssp ----CHHHHHHHHHHCSBCCHHHHHHHHTTCCCGGGHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHC-------
T ss_pred chhHHHHHHHHHHHcCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 35667888889998864 478999999999999999999999999976532 24688888876321
Q ss_pred cchHHHHHhhhccCCcCCCCCCCchh---hHHHHHHHHhhccchhhhhhhhccCCCCCCccccccccccccccccCCCCC
Q psy7828 269 YDLLIDKLTIKDVQLTASNDDQYFVF---EDLLYQILLCFSRDTEILSIFEHSSASPLYGPLKNKNTNTENLVVYPPSGI 345 (503)
Q Consensus 269 ~~~~~d~lI~kDv~RT~~~d~~yf~f---~d~l~qvl~afsrd~~vl~~i~~~s~~~~~~~l~~~~~~~~~~~~~p~~G~ 345 (503)
.+....++|.+||.||+|+ .||.. ++.+.+||.||+.. .|..|
T Consensus 100 ~~~~~~~~I~~Dv~RT~p~--~~F~~~~~~~~L~rIL~~ya~~-------------------------------~p~vg- 145 (345)
T 2qfz_A 100 VHQDTYRQIHIDIPRMSPE--ALILQPKVTEIFERILFIWAIR-------------------------------HPASG- 145 (345)
T ss_dssp -CHHHHHHHHHHGGGCSCH--HHHTSHHHHHHHHHHHHHHHHH-------------------------------CTTTC-
T ss_pred chHHHHHHHHHhCcccCCc--cccCCchHHHHHHHHHHHHHHH-------------------------------CCCCC-
Confidence 1334557999999999876 44543 24455566555431 24446
Q ss_pred ccccchHHHHHHHHHhccC------------------------hhHHHHHHHHHHHHhhcccCCCCcChHhHHHHHHHHH
Q psy7828 346 IPFHGFTMYATPFCYLYDD------------------------VISLYFTFRAFYLRYFYHLHQVSSNEQGILSLCILFH 401 (503)
Q Consensus 346 i~~qGm~~iaapLl~l~~d------------------------EedaFw~f~~L~~~~~~~l~~~~~~~~Gi~~l~~~fe 401 (503)
|||||+++||||++++.+ |++|||||+++|+++ +.+|..+ .+|+...+.+|+
T Consensus 146 -Y~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~--~~~y~~~-~~~i~~~~~~l~ 221 (345)
T 2qfz_A 146 -YVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGI--QDNYTFA-QPGIQMKVKMLE 221 (345)
T ss_dssp -CCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHHHHHHHTS--GGGSSTT-CHHHHHHHHHHH
T ss_pred -cccChHHHHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHHHHHHHcc--ccccccC-cHHHHHHHHHHH
Confidence 899999999999988742 899999999999987 5456554 479999999999
Q ss_pred HHHHhhchHHHHHHHhcCCCcccchHHHHHHHhcCCCChhhHHHHHHHHHhcCCch---HHHHHHHHHHHHhHHHhhCCC
Q psy7828 402 RLLQRYEPQLFLHFKTIHIHPIKIVFKWIMRCFSGHLPPDQILYLWDLILAYDSLE---IISILAVAILSFRRENLMQVD 478 (503)
Q Consensus 402 ~LL~~~~P~L~~HL~~~~i~~~~~a~~WfltlFs~~lp~~~vLrIWD~~l~~~~~~---il~~vAlAIL~~~~~~LL~~~ 478 (503)
.||++++|+|++||++.|+.+..|+++||+|+|+++||++.++||||.+|++ |.. +++++|+|+|...+++||++.
T Consensus 222 ~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~-g~~~~~~~~~v~~AiL~~~~~~ll~~~ 300 (345)
T 2qfz_A 222 ELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSE-PDGFSHFHLYVCAAFLVRWRKEILEEK 300 (345)
T ss_dssp HHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTS-TTTTTTHHHHHHHHHHHHTHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999994 433 789999999999999999888
Q ss_pred CHHHHHHHHhcccCCC
Q psy7828 479 TLQNVEVGYEILYGRY 494 (503)
Q Consensus 479 ~~~~i~~~L~~ls~~~ 494 (503)
++++++.+|++++...
T Consensus 301 d~~~il~~L~~~p~~~ 316 (345)
T 2qfz_A 301 DFQELLLFLQNLPTAH 316 (345)
T ss_dssp CHHHHHHHHTSCSCTT
T ss_pred CHHHHHHHHHcCCCcC
Confidence 9999999999988754
No 3
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-40 Score=342.90 Aligned_cols=246 Identities=20% Similarity=0.292 Sum_probs=199.2
Q ss_pred HHHHHH-HHhcCCC----hHHHHhhhhcCCCcchHHHHHHHhhCCCCCCCChHHHHHHHHccc-cc--------------
Q psy7828 210 RITLGE-KVLNSKH----APVAQEFLKKGSPRCLRGKIWCQVLGSEATPDNSKYFEQLKSSVL-TY-------------- 269 (503)
Q Consensus 210 r~~~~~-~vl~~~~----~~~l~~l~r~GIP~~lR~~VW~~LLg~~~~~~~~~~Ye~L~~~~~-~~-------------- 269 (503)
|..++. .++.+.. ..++++++++|||+++|+.||+.++|+.. ..+.+.|+.+.+... ++
T Consensus 20 ~~~~W~~~il~~w~~~~~~~~lr~l~~~GIP~~lR~~vW~~llg~~~-~~~~~~y~~ll~~~~~~~~~~~~~~~~~~~~d 98 (334)
T 2qq8_A 20 AVLTWNNEILPNWETMWCSRKVRDLWWQGIPPSVRGKVWSLAIGNEL-NITHELFDICLARAKERWRSLSTGGSEVENED 98 (334)
T ss_dssp HHHHHHHTTGGGCC--CCCHHHHHHHHTCCCHHHHHHHHHHHHCCTT-CCCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHhHHhccChHHHHHHHHCCCCHHHHHHHHHHHhCCcc-ccCHHHHHHHHHHHHHHHHHhccccccCcccc
Confidence 444454 3555433 57899999999999999999999999864 345678887754311 00
Q ss_pred -------chHHHHHhhhccCCcCCCCCCCc---hhhHHHHHHHHhhccchhhhhhhhccCCCCCCccccccccccccccc
Q psy7828 270 -------DLLIDKLTIKDVQLTASNDDQYF---VFEDLLYQILLCFSRDTEILSIFEHSSASPLYGPLKNKNTNTENLVV 339 (503)
Q Consensus 270 -------~~~~d~lI~kDv~RT~~~d~~yf---~f~d~l~qvl~afsrd~~vl~~i~~~s~~~~~~~l~~~~~~~~~~~~ 339 (503)
.....++|++||+||+|++..|. +.++.+.+||.||+..
T Consensus 99 ~~~~~~~~~~~~~~I~~Dv~RT~p~~~~F~~~~~~~~~L~rIL~aya~~------------------------------- 147 (334)
T 2qq8_A 99 AGFSAADREASLELIKLDISRTFPNLCIFQQGGPYHDMLHSILGAYTCY------------------------------- 147 (334)
T ss_dssp --------CCHHHHHHHHHHTSSGGGCSSSTTSTTHHHHHHHHHHHHHH-------------------------------
T ss_pred cccccccchhHHHHHHHHHhhcCCCchhhcCCCchHHHHHHHHHHHHHh-------------------------------
Confidence 01234799999999998876553 3467788888877642
Q ss_pred cCCCCCccccchHHHHHHHHHhccChhHHHHHHHHHHHHhhcccCCCCcChHhHHHHHHHHHHHHHhhchHHHHHHHhcC
Q psy7828 340 YPPSGIIPFHGFTMYATPFCYLYDDVISLYFTFRAFYLRYFYHLHQVSSNEQGILSLCILFHRLLQRYEPQLFLHFKTIH 419 (503)
Q Consensus 340 ~p~~G~i~~qGm~~iaapLl~l~~dEedaFw~f~~L~~~~~~~l~~~~~~~~Gi~~l~~~fe~LL~~~~P~L~~HL~~~~ 419 (503)
.|..| ||||||++||||++. .+|++|||||+++|+++.++..|..+ .+|+...+.+|+.||+.++|+|++||++.|
T Consensus 148 ~p~vg--Y~QGm~~iaa~lLl~-~~E~~aF~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~ 223 (334)
T 2qq8_A 148 RPDVG--YVQGMSFIAAVLILN-LDTADAFIAFSNLLNKPCQMAFFRVD-HGLMLTYFAAFEVFFEENLPKLFAHFKKNN 223 (334)
T ss_dssp CTTTC--CCTTHHHHHHHHHHH-SCHHHHHHHHHHHHTSHHHHHHHSSC-CHHHHHHHHHHHHHHHHHCHHHHHHHHHTT
T ss_pred CCCCC--cchhHHHHHHHHHhc-CCHHHHHHHHHHHHHhhhHHhccCCC-hHHHHHHHHHHHHHHHHHCHHHHHHHHHcC
Confidence 23345 899999999998865 57999999999999876443223333 478888899999999999999999999999
Q ss_pred CCcccchHHHHHHHhcCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHHHhHHHhhCCCCHHHHHHHHhcccCC
Q psy7828 420 IHPIKIVFKWIMRCFSGHLPPDQILYLWDLILAYDSLEIISILAVAILSFRRENLMQVDTLQNVEVGYEILYGR 493 (503)
Q Consensus 420 i~~~~~a~~WfltlFs~~lp~~~vLrIWD~~l~~~~~~il~~vAlAIL~~~~~~LL~~~~~~~i~~~L~~ls~~ 493 (503)
+.+.+|+++||+|+|++++|++.++||||.+|+ +|..+++++|+|||+..++.|+++ +.++++.+|+++|..
T Consensus 224 i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~-eg~~~l~~valaiL~~~~~~Ll~~-d~~~il~~L~~lp~~ 295 (334)
T 2qq8_A 224 LTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCR-DGEEFLFRTALGILKLFEDILTKM-DFIHMAQFLTRLPED 295 (334)
T ss_dssp CCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTHHHHHTC-CHHHHHHHHHSCCTT
T ss_pred CCccchHHHHHHHHhcccCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHhCCCc
Confidence 999999999999999999999999999999999 678999999999999999999997 588999999998763
No 4
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.9e-40 Score=335.78 Aligned_cols=230 Identities=18% Similarity=0.276 Sum_probs=193.4
Q ss_pred ChHHHHhhhhcCCCcchHHHHHHHhhCCCCCCCChHHHHHHHHcccccchHHHHHhhhccCCcCCCCCCCc----hhhHH
Q psy7828 222 HAPVAQEFLKKGSPRCLRGKIWCQVLGSEATPDNSKYFEQLKSSVLTYDLLIDKLTIKDVQLTASNDDQYF----VFEDL 297 (503)
Q Consensus 222 ~~~~l~~l~r~GIP~~lR~~VW~~LLg~~~~~~~~~~Ye~L~~~~~~~~~~~d~lI~kDv~RT~~~d~~yf----~f~d~ 297 (503)
...++++++++|||+++|+.||+.++|+.+.....+.|..|.++. ...+++|.+|++||+|++..|. +.++.
T Consensus 22 ~~~~l~~l~~~GIP~~lR~~vW~~llg~~~~~~~~~~Y~~l~~~~----~~~~~~I~~Dv~Rt~p~~~~f~~~~~~~~~~ 97 (310)
T 3hzj_A 22 RPKGLSTLVKSGVPEALRAEVWQLLAGCHDNQAMLDRYRILITKD----SAQESVITRDIHRTFPAHDYFKDTGGDGQES 97 (310)
T ss_dssp CCTTHHHHHHHCCCGGGHHHHHHHHTTCCCCHHHHHHHHHHTTSC----CTTHHHHHHHHTTSSTTSTTTSSTTSHHHHH
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHCCCcchhHHHHHHHHHhcc----CCcHHHHHHHHHhhCCCchhhcCCCchhHHH
Confidence 357899999999999999999999999987644457788876543 2345799999999999876553 24566
Q ss_pred HHHHHHhhccchhhhhhhhccCCCCCCccccccccccccccccCCCCCccccchHHHHHHHHHhccChhHHHHHHHHHHH
Q psy7828 298 LYQILLCFSRDTEILSIFEHSSASPLYGPLKNKNTNTENLVVYPPSGIIPFHGFTMYATPFCYLYDDVISLYFTFRAFYL 377 (503)
Q Consensus 298 l~qvl~afsrd~~vl~~i~~~s~~~~~~~l~~~~~~~~~~~~~p~~G~i~~qGm~~iaapLl~l~~dEedaFw~f~~L~~ 377 (503)
+.+|+.||+.. .|..| |||||+.+||||++++ +|++|||||+++|.
T Consensus 98 L~~IL~ay~~~-------------------------------~p~ig--Y~QGm~~iaa~lL~~~-~e~~aF~~l~~l~~ 143 (310)
T 3hzj_A 98 LYKICKAYSVY-------------------------------DEDIG--YCQGQSFLAAVLLLHM-PEEQAFCVLVKIMY 143 (310)
T ss_dssp HHHHHHHHHHH-------------------------------CTTTC--SCTTHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------------------------------CCCCC--ccCCHHHHHHHHHHhC-CHHHHHHHHHHHHh
Confidence 77777777542 23346 8999999999988776 79999999999999
Q ss_pred HhhcccCCCCcChHhHHHHHHHHHHHHHhhchHHHHHHHhcCCCcccchHHHHHHHhcCCCChhhHHHHHHHHHhcCCch
Q psy7828 378 RYFYHLHQVSSNEQGILSLCILFHRLLQRYEPQLFLHFKTIHIHPIKIVFKWIMRCFSGHLPPDQILYLWDLILAYDSLE 457 (503)
Q Consensus 378 ~~~~~l~~~~~~~~Gi~~l~~~fe~LL~~~~P~L~~HL~~~~i~~~~~a~~WfltlFs~~lp~~~vLrIWD~~l~~~~~~ 457 (503)
++..+..|..+ .+|+...+.+|+.||+.++|+|++||++.|+.+..|+++||+|+|++++|++.++||||.+++ +|.+
T Consensus 144 ~~~~~~~~~~~-~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~-~g~~ 221 (310)
T 3hzj_A 144 DYGLRDLYRNN-FEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLC-EGLN 221 (310)
T ss_dssp TSCGGGGTHHH-HHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHH-HCTT
T ss_pred ccccccccccc-HHHHHHHHHHHHHHHHHhChHHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-CCcH
Confidence 87444344332 368888889999999999999999999999999999999999999999999999999999999 6678
Q ss_pred HHHHHHHHHHHHhHHHhhCCCCHHHHHHHHh-cccC
Q psy7828 458 IISILAVAILSFRRENLMQVDTLQNVEVGYE-ILYG 492 (503)
Q Consensus 458 il~~vAlAIL~~~~~~LL~~~~~~~i~~~L~-~ls~ 492 (503)
+++++|+||++.++++|+++ +.++++.+|+ +++.
T Consensus 222 ~l~~v~lail~~~~~~Ll~~-d~~~~l~~l~~~lp~ 256 (310)
T 3hzj_A 222 IIFHVALALLKTSKEDLLQA-DFEGALKFFRVQLPK 256 (310)
T ss_dssp HHHHHHHHHHHHTHHHHHTC-CHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHhCcc
Confidence 99999999999999999998 7999999985 5554
No 5
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=9.7e-40 Score=342.99 Aligned_cols=248 Identities=18% Similarity=0.287 Sum_probs=206.1
Q ss_pred HHHHHHHHHHhcCCC---hHHHHhhhhcCCCcchHHHHHHHhhCCCCCCC---------ChHHHHHHHHccc----ccch
Q psy7828 208 SERITLGEKVLNSKH---APVAQEFLKKGSPRCLRGKIWCQVLGSEATPD---------NSKYFEQLKSSVL----TYDL 271 (503)
Q Consensus 208 ~er~~~~~~vl~~~~---~~~l~~l~r~GIP~~lR~~VW~~LLg~~~~~~---------~~~~Ye~L~~~~~----~~~~ 271 (503)
.+|..+++++|++.. ..++++++++|||+++|+.||+.++|+.+... .++.|+.|+++.. ..+.
T Consensus 5 ~~R~~kw~~lL~~~~~~d~~~Lr~l~~~GIP~~lR~~vW~~LLg~~~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~ 84 (396)
T 1fkm_A 5 IQRISKFDNILKDKTIINQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHSRDI 84 (396)
T ss_dssp HHHHHHHHHHHSSCSBCCHHHHHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSSSCSTHH
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCChhHHHHHHHHHHHHHHHHHHHHhhccCcccH
Confidence 578889999998754 67899999999999999999999999987642 2478998887632 2334
Q ss_pred HHHHHhhhccCCcCCCCCCCch---hhHHHHHHHHhhccchhhhhhhhccCCCCCCccccccccccccccccCCCCCccc
Q psy7828 272 LIDKLTIKDVQLTASNDDQYFV---FEDLLYQILLCFSRDTEILSIFEHSSASPLYGPLKNKNTNTENLVVYPPSGIIPF 348 (503)
Q Consensus 272 ~~d~lI~kDv~RT~~~d~~yf~---f~d~l~qvl~afsrd~~vl~~i~~~s~~~~~~~l~~~~~~~~~~~~~p~~G~i~~ 348 (503)
...++|++||.||++++.. |. .++.+.+||.+|+.. .|..| ||
T Consensus 85 ~~~~qI~~Dv~RT~p~~~~-F~~~~~~~~L~rIL~aya~~-------------------------------np~iG--Y~ 130 (396)
T 1fkm_A 85 PTWHQIEIDIPRTNPHIPL-YQFKSVQNSLQRILYLWAIR-------------------------------HPASG--YV 130 (396)
T ss_dssp HHHHHHHHHGGGSSTTSGG-GGSHHHHHHHHHHHHHHHHH-------------------------------CTTTC--SC
T ss_pred HHHHHHHHHhhhhCCCccc-ccCchHHHHHHHHHHHHHHH-------------------------------CCCCC--cc
Confidence 4557999999999987654 43 234566666665431 34446 89
Q ss_pred cchHHHHHHHHHhcc---------------------C-------hhHHHHHHHHHHHHhhcccCCCCcChHhHHHHHHHH
Q psy7828 349 HGFTMYATPFCYLYD---------------------D-------VISLYFTFRAFYLRYFYHLHQVSSNEQGILSLCILF 400 (503)
Q Consensus 349 qGm~~iaapLl~l~~---------------------d-------EedaFw~f~~L~~~~~~~l~~~~~~~~Gi~~l~~~f 400 (503)
|||+++||||++++. + |++|||||+++|+++ +.+|..+. +|+...+.+|
T Consensus 131 QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~--~~~f~~~~-~~i~~~~~~l 207 (396)
T 1fkm_A 131 QGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQI--TDNYIHGQ-PGILRQVKNL 207 (396)
T ss_dssp TTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGG--GGGSSTTC-HHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHHHHHHHHHHHH--HHHHhhcH-HHHHHHHHHH
Confidence 999999999998752 2 899999999999987 54565544 7999999999
Q ss_pred HHHHHhhchHHHHHHHhcCCCcccchHHHHHHHhcCCCChhhHHHHHHHHHhcC--------------------------
Q psy7828 401 HRLLQRYEPQLFLHFKTIHIHPIKIVFKWIMRCFSGHLPPDQILYLWDLILAYD-------------------------- 454 (503)
Q Consensus 401 e~LL~~~~P~L~~HL~~~~i~~~~~a~~WfltlFs~~lp~~~vLrIWD~~l~~~-------------------------- 454 (503)
+.||++++|+|++||+++|+.+.+|+++||+|+|+++||++.++||||.||++|
T Consensus 208 ~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~ 287 (396)
T 1fkm_A 208 SQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRV 287 (396)
T ss_dssp HHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCcccccccc
Confidence 999999999999999999999999999999999999999999999999999965
Q ss_pred -----------------------------------C-chHHHHHHHHHHHHhHHHhhCCCCHHHHHHHHhcccCC
Q psy7828 455 -----------------------------------S-LEIISILAVAILSFRRENLMQVDTLQNVEVGYEILYGR 493 (503)
Q Consensus 455 -----------------------------------~-~~il~~vAlAIL~~~~~~LL~~~~~~~i~~~L~~ls~~ 493 (503)
+ .++++++|+|+|...+++||++ ++++++.+|++++..
T Consensus 288 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~AlL~~~r~~Ll~~-df~~~l~~L~~~p~~ 361 (396)
T 1fkm_A 288 ASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQLMEM-DFQETITFLQNPPTK 361 (396)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHHHTHHHHTTC-CHHHHHHHHTSCSCT
T ss_pred ccccccccccccccccccccccccccccchhccccchHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHhcCCCC
Confidence 1 3789999999999999999985 689999999997764
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=1.1e-37 Score=314.64 Aligned_cols=246 Identities=13% Similarity=0.160 Sum_probs=193.3
Q ss_pred hhhHHHHHHHHHHHhcCC--ChHHHHhhhhcC---CCcchHHHHHHHhhCCCCCCCChHHHHHHHHcccccchHHHHHhh
Q psy7828 204 NALESERITLGEKVLNSK--HAPVAQEFLKKG---SPRCLRGKIWCQVLGSEATPDNSKYFEQLKSSVLTYDLLIDKLTI 278 (503)
Q Consensus 204 ~~~~~er~~~~~~vl~~~--~~~~l~~l~r~G---IP~~lR~~VW~~LLg~~~~~~~~~~Ye~L~~~~~~~~~~~d~lI~ 278 (503)
+..+..|.+..+++++.. +..+++++++.| +|+++|+.||+.++|+.+...+. +|..+... +....++|+
T Consensus 13 ~~~~~~k~~~i~~~l~~~~~dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~-~~~~~~~~----~~~~~~qI~ 87 (292)
T 4hl4_A 13 NAKRKKKVAEIHQALNSDPTDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPP-ISGKNLRQ----MSKDYQQVL 87 (292)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCS-CCCTTHHH----HCTTHHHHH
T ss_pred cchhHHHHHHHHHHHcCCcccHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCC-chhhhhcc----cchhHHHHH
Confidence 457778888888898774 478999998854 89999999999999999875432 23222111 223357999
Q ss_pred hccCCcCCCCCCCch-h-----hHHHHHHHHhhccchhhhhhhhccCCCCCCccccccccccccccccCCCCCccccchH
Q psy7828 279 KDVQLTASNDDQYFV-F-----EDLLYQILLCFSRDTEILSIFEHSSASPLYGPLKNKNTNTENLVVYPPSGIIPFHGFT 352 (503)
Q Consensus 279 kDv~RT~~~d~~yf~-f-----~d~l~qvl~afsrd~~vl~~i~~~s~~~~~~~l~~~~~~~~~~~~~p~~G~i~~qGm~ 352 (503)
+||+||++++..|.. + ++.+.+|+.||++. +|..| ||||||
T Consensus 88 ~Dv~RT~~~~~~~~~~~~~~~~~~~L~~iL~ay~~~-------------------------------~p~vg--Y~QGm~ 134 (292)
T 4hl4_A 88 LDVRRSLRRFPPGMPEEQREGLQEELIDIILLILER-------------------------------NPQLH--YYQGYH 134 (292)
T ss_dssp HHHHTTGGGSCTTSCHHHHHHHHHHHHHHHHHHHHH-------------------------------CTTCC--CCTTHH
T ss_pred HhhhhhhhhccCCCCHHHHHHHHHHHHHHHHHHHHH-------------------------------CCCCC--eeccHH
Confidence 999999987654421 1 23344555555431 34446 899999
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHHHhhcccCCCCcChHhHHHHHHHHHHHHHhhchHHHHHHHhcCCCcccchHHHHHH
Q psy7828 353 MYATPFCYLYDDVISLYFTFRAFYLRYFYHLHQVSSNEQGILSLCILFHRLLQRYEPQLFLHFKTIHIHPIKIVFKWIMR 432 (503)
Q Consensus 353 ~iaapLl~l~~dEedaFw~f~~L~~~~~~~l~~~~~~~~Gi~~l~~~fe~LL~~~~P~L~~HL~~~~i~~~~~a~~Wflt 432 (503)
++||||+++ .+|++|||||+++++++++. .|..+ ..|+...+.+|+.+|+.++|+|++||++.++ ..+|+++||+|
T Consensus 135 ~iaa~lLl~-~~e~~aF~~l~~l~~~~l~~-~~~~~-~~~~~~~~~~l~~ll~~~~P~L~~hL~~~~i-~~~~~~~W~lt 210 (292)
T 4hl4_A 135 DIVVTFLLV-VGERLATSLVEKLSTHHLRD-FMDPT-MDNTKHILNYLMPIIDQVNPELHDFMQSAEV-GTIFALSWLIT 210 (292)
T ss_dssp HHHHHHHHH-HCHHHHHHHHHHHHHTTTTG-GGCSS-SCTTTGGGGGHHHHHHHHCHHHHHHHC-CCC-CSGGGHHHHHT
T ss_pred HHHHHHHHH-cCHHHHHHHHHHHHHHHHHH-hcccc-hHHHHHHHHHHHHHHHHHCHHHHHHHHHcCC-CcchHHHHHHH
Confidence 999999855 57999999999999976542 33333 3577778889999999999999999999999 57999999999
Q ss_pred HhcCCCC-hhhHHHHHHHHHhcCCchHHHHHHHHHHHHhHHHhhCCC-CHHHHHHHHhcccC
Q psy7828 433 CFSGHLP-PDQILYLWDLILAYDSLEIISILAVAILSFRRENLMQVD-TLQNVEVGYEILYG 492 (503)
Q Consensus 433 lFs~~lp-~~~vLrIWD~~l~~~~~~il~~vAlAIL~~~~~~LL~~~-~~~~i~~~L~~ls~ 492 (503)
+|++++| ++.++||||.+++ +|..+++++|+||+..++++||+++ +++.+..+++++++
T Consensus 211 lF~~~l~~~~~~~rlWD~~l~-~g~~~~~~v~~ail~~~~~~Ll~~~~d~~~l~~~l~~lp~ 271 (292)
T 4hl4_A 211 WFGHVLSDFRHVVRLYDFFLA-CHPLMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQ 271 (292)
T ss_dssp TTTTTSCCHHHHHHHHHHHHH-SCTTHHHHHHHHHHHHTHHHHHTSCCSTTHHHHHHHSCCS
T ss_pred HHhhhcCcHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Confidence 9999996 9999999999999 6688999999999999999999974 67888899999984
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=100.00 E-value=3.9e-35 Score=296.27 Aligned_cols=233 Identities=17% Similarity=0.250 Sum_probs=179.3
Q ss_pred HHHHHHhcCCC--hHHHHhhhhcC-CCcchHHHHHHHhhCCCCCCCC---------hHHHHHHHHcccccchHHHHHhhh
Q psy7828 212 TLGEKVLNSKH--APVAQEFLKKG-SPRCLRGKIWCQVLGSEATPDN---------SKYFEQLKSSVLTYDLLIDKLTIK 279 (503)
Q Consensus 212 ~~~~~vl~~~~--~~~l~~l~r~G-IP~~lR~~VW~~LLg~~~~~~~---------~~~Ye~L~~~~~~~~~~~d~lI~k 279 (503)
+..+++|++.. ..++++++++| ||+.+|+.||++|+|+.+...+ ++.|+.|.++ ..+.+
T Consensus 27 ~~~~~ll~~~~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~~~~~~l~~kr~eY~~l~~~---------~~~~r 97 (294)
T 3qwl_A 27 KSLEILLKDDRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHESHAKVMMYRKEQYLDVLHA---------LKVVR 97 (294)
T ss_dssp HHHHHHTTSSBCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHH---------HHHTT
T ss_pred HHHHHHhcCCCCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHh---------hhhhh
Confidence 34566777654 78999999999 9999999999999999887543 2556555543 12234
Q ss_pred ccCCcCCCCCCCchhhHHHHHHHHhhccchhhhhhhhccCCCCCCccccccccccccccccCCCCCccccchHHHHHHHH
Q psy7828 280 DVQLTASNDDQYFVFEDLLYQILLCFSRDTEILSIFEHSSASPLYGPLKNKNTNTENLVVYPPSGIIPFHGFTMYATPFC 359 (503)
Q Consensus 280 Dv~RT~~~d~~yf~f~d~l~qvl~afsrd~~vl~~i~~~s~~~~~~~l~~~~~~~~~~~~~p~~G~i~~qGm~~iaapLl 359 (503)
+|++.. |+...+.+ .| +.+.- ....+ ..+++.. ++|||+.|||+++
T Consensus 98 ~I~~~t-------P~~~vfl~---~~-----~~~~~---------~l~~~--------~~~~~~~--~~~~~~~Iaa~ll 143 (294)
T 3qwl_A 98 FVSDAT-------PQAEVYLR---MY-----QLESG---------KLPRS--------PSFPLEP--DDEVFLAIAKAME 143 (294)
T ss_dssp SCCTTS-------CHHHHHHH---HH-----HHHHT---------CCCSS--------TTSCCCH--HHHHHHHHHHHHH
T ss_pred hhhccC-------chHHHHHH---HH-----Hcccc---------ccccc--------ccCCccc--chhhHHHHHHHHH
Confidence 444431 23222221 11 01100 00000 0123332 5689999999999
Q ss_pred HhccChhHHHHHHHHHHHHhhcccCCCCcChHhHHHHHHHHHHHHHhhchHHHHHHHhcCCCcccchHHHHHHHhcCCCC
Q psy7828 360 YLYDDVISLYFTFRAFYLRYFYHLHQVSSNEQGILSLCILFHRLLQRYEPQLFLHFKTIHIHPIKIVFKWIMRCFSGHLP 439 (503)
Q Consensus 360 ~l~~dEedaFw~f~~L~~~~~~~l~~~~~~~~Gi~~l~~~fe~LL~~~~P~L~~HL~~~~i~~~~~a~~WfltlFs~~lp 439 (503)
+++++|+||||||+++|++. +.+|..+. +|+.. .++.||+.++|+|++||+++|+.+.+++.+||+|+|++++|
T Consensus 144 ~l~~~E~dAFW~f~~Lm~~l--~~~f~~~~-~gl~~---~l~~LL~~~dP~L~~HL~~~~i~~~~~~~rWfl~lF~~~~p 217 (294)
T 3qwl_A 144 EMVEDSVDCYWITRRFVNQL--NTKYRDSL-PQLPK---AFEQYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLP 217 (294)
T ss_dssp HHCCSHHHHHHHHHHHHHHH--HTTTTTTG-GGHHH---HHHHHHHHHCHHHHHHHHHTTCGGGSCHHHHHTSTTTTTSC
T ss_pred HHhCCHHHHHHHHHHHHHHH--HHhhCCCh-hHHHH---HHHHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHhccCCC
Confidence 99999999999999999996 44666554 67654 46999999999999999999999888888999999999999
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHHHHHhHHHhhCCCCHHHHHHHHhcccCCC
Q psy7828 440 PDQILYLWDLILAYDSLEIISILAVAILSFRRENLMQVDTLQNVEVGYEILYGRY 494 (503)
Q Consensus 440 ~~~vLrIWD~~l~~~~~~il~~vAlAIL~~~~~~LL~~~~~~~i~~~L~~ls~~~ 494 (503)
++.++||||.+|+ +|.++++++|+|||+.++++||++++.++++.+|+++|...
T Consensus 218 ~~~vlRlWD~~~~-~~~~~l~~valAiL~~~r~~Ll~~~~~~~il~~Lq~lp~~d 271 (294)
T 3qwl_A 218 ESSLQRVWDKVVS-GSCKILVFVAVEILLTFKIKVMALNSAEKITKFLENIPQDS 271 (294)
T ss_dssp HHHHHHHHHHHHT-TCSTHHHHHHHHHHHHTHHHHHHCCSHHHHHHHHTTCCSTT
T ss_pred HHHHHHHHHHHHh-CCchHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCccc
Confidence 9999999999999 88899999999999999999999998899999999999765
No 8
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=31.59 E-value=54 Score=27.12 Aligned_cols=41 Identities=15% Similarity=0.267 Sum_probs=31.8
Q ss_pred HHHhhCCCCChhhHHHHHHHHHHhhcHHHHHHHHHHHHHHhcC
Q psy7828 20 QRLVVSPCIKESDFKSTLLESIKNVGIETQIRNTVFHWMRSHK 62 (503)
Q Consensus 20 q~~~~~~~v~~~~~~~~l~~~~~~~g~e~~l~n~v~~~~~~~~ 62 (503)
|+++.|- +.+.+++-|++-|.+.||..++|+..=..++.+|
T Consensus 18 ~~LveSG--e~erL~~lL~~rL~EcGW~Devr~~~r~~i~~~g 58 (101)
T 4dhx_B 18 QKLIETG--ERERLKELLRAKLIECGWKDQLKAHCKEVIKEKG 58 (101)
T ss_dssp HHHHHTT--HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcC--CHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHcC
Confidence 5666554 3566889999999999999999988877777664
No 9
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=24.81 E-value=62 Score=31.80 Aligned_cols=78 Identities=9% Similarity=0.135 Sum_probs=58.1
Q ss_pred hHHHHHHHhhCC-------CCChhhHHHHHHHHHHhhcHHHHHHHHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHHH
Q psy7828 15 SMTLFQRLVVSP-------CIKESDFKSTLLESIKNVGIETQIRNTVFHWMRSHKIDLDSNSWAEPLTYLRKAQFQWEKR 87 (503)
Q Consensus 15 ~~~~~q~~~~~~-------~v~~~~~~~~l~~~~~~~g~e~~l~n~v~~~~~~~~~~~~~~~~~~pl~~~~~a~~~w~~~ 87 (503)
.-+++|+.+.-| -++.+++++.+..=...-++.|.+|++...-+|..- ...+..++|-.|++.|+..-.++
T Consensus 197 ~L~~I~~~v~vpLVlHGgSG~~~e~i~~ai~~Gv~KiNi~Tdl~~a~~~~~r~~~--~~~~~~~dpr~~~~~~~~a~~~~ 274 (288)
T 3q94_A 197 EMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGTSKINVNTENQIEFTKAVREVL--NKDQEVYDPRKFIGPGRDAIKAT 274 (288)
T ss_dssp HHHHHHHHHCSCEEECCCTTCCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHH--HHCSSCCCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEeCCCCCCHHHHHHHHHcCCeEEEEChHHHHHHHHHHHHHH--HhCCCcCCHHHHHHHHHHHHHHH
Confidence 445667766544 567777877777767777889999999988887762 11124579999999999999998
Q ss_pred HHHHHHH
Q psy7828 88 IQKSLNS 94 (503)
Q Consensus 88 ~~~~~~~ 94 (503)
+...+.-
T Consensus 275 v~~~~~~ 281 (288)
T 3q94_A 275 VIGKIRE 281 (288)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877653
No 10
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Probab=22.64 E-value=50 Score=32.80 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=51.1
Q ss_pred CCChhhHHHHHHHHHHhhcHHHHHHHHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q psy7828 27 CIKESDFKSTLLESIKNVGIETQIRNTVFHWMRSHKIDLDSNSWAEPLTYLRKAQFQWEKRIQKSLNS 94 (503)
Q Consensus 27 ~v~~~~~~~~l~~~~~~~g~e~~l~n~v~~~~~~~~~~~~~~~~~~pl~~~~~a~~~w~~~~~~~~~~ 94 (503)
-|+.+++++.+..-...-++.|.+|++...-+|..- ...+..++|-.|++.|+..-.+++...++-
T Consensus 233 G~p~e~i~~ai~~GV~KiNi~Tdl~~A~~~~vr~~~--~~~~~~~dpr~~l~~~~~a~~~~v~~~~~~ 298 (305)
T 1rvg_A 233 GIHPEDIKKAISLGIAKINTDTDLRLAFTALIREAL--NKNPKEFDPRKYLGPAREAVKEVVKSRMEL 298 (305)
T ss_dssp CCCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHH--HHCTTCCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCeEEEEChHHHHHHHHHHHHHH--HhCccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888777777788899999999999888762 111236789999999998888888877643
No 11
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=21.13 E-value=1.1e+02 Score=25.04 Aligned_cols=40 Identities=18% Similarity=0.100 Sum_probs=31.5
Q ss_pred HHHhhCCCCChhhHHHHHHHHHHhhcHHHHHHHHHHHHHHhc
Q psy7828 20 QRLVVSPCIKESDFKSTLLESIKNVGIETQIRNTVFHWMRSH 61 (503)
Q Consensus 20 q~~~~~~~v~~~~~~~~l~~~~~~~g~e~~l~n~v~~~~~~~ 61 (503)
|+++.|- +.+.+++-|++-|.++||..++|...=..++..
T Consensus 14 ~~LveSG--e~erL~~lL~~rL~EcGW~Devr~~~r~~i~~~ 53 (96)
T 3mhs_B 14 QYLVESG--NYELISNELKARLLQEGWVDKVKDLTKSEMNIN 53 (96)
T ss_dssp HHHHHTT--HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHCC--cHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhc
Confidence 5565554 356699999999999999999999887777655
No 12
>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*
Probab=20.19 E-value=59 Score=32.28 Aligned_cols=65 Identities=12% Similarity=0.182 Sum_probs=51.8
Q ss_pred CCChhhHHHHHHHHHHhhcHHHHHHHHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q psy7828 27 CIKESDFKSTLLESIKNVGIETQIRNTVFHWMRSHKIDLDSNSWAEPLTYLRKAQFQWEKRIQKSLN 93 (503)
Q Consensus 27 ~v~~~~~~~~l~~~~~~~g~e~~l~n~v~~~~~~~~~~~~~~~~~~pl~~~~~a~~~w~~~~~~~~~ 93 (503)
-|+.+++++.+..-...-++.|.+|.+...-+|..- ...+..++|-.|++.|+..-.+++...+.
T Consensus 235 G~p~e~i~~ai~~GV~KiNi~Tdl~~a~~~~vr~~~--~~~~~~~dpr~~~~~~~~a~~~~v~~~~~ 299 (307)
T 3n9r_A 235 GVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVA--NEDKSQFDLRKFFSPAQLALKNVVKERMK 299 (307)
T ss_dssp CCCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHH--HHCTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCceEEEechHHHHHHHHHHHHHH--HhCCCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 677777888777777777889999999988888762 11235679999999999999999988776
Done!