Query psy7828
Match_columns 503
No_of_seqs 211 out of 1221
Neff 6.5
Searched_HMMs 13730
Date Fri Aug 16 19:55:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7828.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7828hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fkma1 a.69.2.1 (A:249-442) Y 99.8 9.1E-21 6.7E-25 177.6 12.8 142 209-386 5-193 (194)
2 d1fkma2 a.69.2.1 (A:443-630) Y 99.7 1.3E-17 9.5E-22 155.3 10.9 102 391-493 3-166 (188)
3 d1udxa3 d.242.1.1 (A:341-416) 47.5 5.8 0.00042 29.4 2.9 37 17-53 19-55 (76)
4 d1dxsa_ a.60.1.2 (A:) C-termin 23.7 22 0.0016 24.4 2.5 21 226-246 34-54 (57)
5 d1ohua_ f.1.4.1 (A:) Apoptosis 23.7 66 0.0048 26.9 6.2 27 75-101 44-70 (172)
6 d1rg6a_ a.60.1.2 (A:) C-termin 19.4 32 0.0023 24.6 2.5 22 226-247 38-59 (67)
7 d1rvga_ c.1.10.2 (A:) Fructose 16.9 53 0.0039 30.2 4.3 64 27-92 233-296 (305)
8 d1w3ex1 d.79.3.1 (X:1-98) Euka 15.3 79 0.0058 23.6 4.4 71 32-117 2-72 (98)
9 d1gvfa_ c.1.10.2 (A:) Tagatose 15.1 43 0.0031 30.5 3.1 66 27-94 211-276 (284)
10 d1jhda2 c.26.1.5 (A:174-396) A 13.8 57 0.0041 27.7 3.5 33 221-262 186-221 (223)
No 1
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.83 E-value=9.1e-21 Score=177.60 Aligned_cols=142 Identities=16% Similarity=0.239 Sum_probs=101.7
Q ss_pred HHHHHHHHHhcCCC---hHHHHhhhhcCCCcchHHHHHHHhhCCCCCCCC---------hHHHHHHHHccc----ccchH
Q psy7828 209 ERITLGEKVLNSKH---APVAQEFLKKGSPRCLRGKIWCQVLGSEATPDN---------SKYFEQLKSSVL----TYDLL 272 (503)
Q Consensus 209 er~~~~~~vl~~~~---~~~l~~l~r~GIP~~lR~~VW~~LLg~~~~~~~---------~~~Ye~L~~~~~----~~~~~ 272 (503)
+|+..++.++.... ..++++++++|||+++|+.||+.++|+.+.... ...|..+..... ..+..
T Consensus 5 ~~i~~~~~~l~~~~~i~~~~lr~l~~~Gip~~lR~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 84 (194)
T d1fkma1 5 QRISKFDNILKDKTIINQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHSRDIP 84 (194)
T ss_dssp HHHHHHHHHHSSCSBCCHHHHHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSSSCSTHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHcCCChHHHHHHHHHHHhhcCCchhhHHHHHHHHhhhhhhhhhhhhhcccccchH
Confidence 57777888887654 578999999999999999999999999876432 133333333211 11223
Q ss_pred HHHHhhhccCCcCCCCCCCch---hhHHHHHHHHhhccchhhhhhhhccCCCCCCccccccccccccccccCCCCCcccc
Q psy7828 273 IDKLTIKDVQLTASNDDQYFV---FEDLLYQILLCFSRDTEILSIFEHSSASPLYGPLKNKNTNTENLVVYPPSGIIPFH 349 (503)
Q Consensus 273 ~d~lI~kDv~RT~~~d~~yf~---f~d~l~qvl~afsrd~~vl~~i~~~s~~~~~~~l~~~~~~~~~~~~~p~~G~i~~q 349 (503)
..++|++||.||+|++.. |. ..+.+.+||.||+.. .|..| |+|
T Consensus 85 ~~~~I~~Dv~RT~~~~~~-f~~~~~~~~L~rIL~~ya~~-------------------------------np~~g--Y~Q 130 (194)
T d1fkma1 85 TWHQIEIDIPRTNPHIPL-YQFKSVQNSLQRILYLWAIR-------------------------------HPASG--YVQ 130 (194)
T ss_dssp HHHHHHHHGGGSSTTSGG-GGSHHHHHHHHHHHHHHHHH-------------------------------CTTTC--SCT
T ss_pred HHHHHHHHHHhcCCcccc-cccchhHHHHHHHHHHHHHH-------------------------------CCCCC--eee
Confidence 447899999999987653 43 344566666666532 23346 899
Q ss_pred chHHHHHHHHHhccC----------------------------hhHHHHHHHHHHHHhhcccCCC
Q psy7828 350 GFTMYATPFCYLYDD----------------------------VISLYFTFRAFYLRYFYHLHQV 386 (503)
Q Consensus 350 Gm~~iaapLl~l~~d----------------------------EedaFw~f~~L~~~~~~~l~~~ 386 (503)
||+++||||++++.+ |+||||||.++|++. +.+|+
T Consensus 131 Gmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ead~F~~f~~lm~~i--~d~y~ 193 (194)
T d1fkma1 131 GINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQI--TDNYI 193 (194)
T ss_dssp THHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGG--GGGSS
T ss_pred cchHHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhhhhhhHHHHHHHHHHHHHHhh--hccCC
Confidence 999999999987633 789999999999987 44553
No 2
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.71 E-value=1.3e-17 Score=155.34 Aligned_cols=102 Identities=22% Similarity=0.363 Sum_probs=94.1
Q ss_pred HhHHHHHHHHHHHHHhhchHHHHHHHhcCCCcccchHHHHHHHhcCCCChhhHHHHHHHHHhcCC---------------
Q psy7828 391 QGILSLCILFHRLLQRYEPQLFLHFKTIHIHPIKIVFKWIMRCFSGHLPPDQILYLWDLILAYDS--------------- 455 (503)
Q Consensus 391 ~Gi~~l~~~fe~LL~~~~P~L~~HL~~~~i~~~~~a~~WfltlFs~~lp~~~vLrIWD~~l~~~~--------------- 455 (503)
|||...+..|+.+++.++|+||+||++.|+++..|+++||+|+|+++||++.++||||.||++++
T Consensus 3 pGi~~~~~~l~~ll~~~dp~L~~hl~~~~i~~~~~~~rW~~~lf~~~~~~~~~~rlWD~~~~~~~~~~~~~~~~~l~~~~ 82 (188)
T d1fkma2 3 PGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIK 82 (188)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC---------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeeeHHHHHHHhhccCCHHHHHHHHHHHHhCCchhhhhhhhhhhhhhc
Confidence 79999999999999999999999999999999999999999999999999999999999998432
Q ss_pred -----------------------------------------------chHHHHHHHHHHHHhHHHhhCCCCHHHHHHHHh
Q psy7828 456 -----------------------------------------------LEIISILAVAILSFRRENLMQVDTLQNVEVGYE 488 (503)
Q Consensus 456 -----------------------------------------------~~il~~vAlAIL~~~~~~LL~~~~~~~i~~~L~ 488 (503)
.+++.++|+|++...|++|++ .+.++++.+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~A~L~~~r~~Ll~-~df~~~l~~Lq 161 (188)
T d1fkma2 83 PPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQLME-MDFQETITFLQ 161 (188)
T ss_dssp ---------------------------------------------CHHHHHHHHHHHHHHHTHHHHTT-CCHHHHHHHHT
T ss_pred cccccccccchhhhhhccccccccccccccchhhhhhcccccccccchHHHHHHHHHHHHHHHHHHHH-ccHHHHHHHHh
Confidence 257889999999999999997 57899999999
Q ss_pred cccCC
Q psy7828 489 ILYGR 493 (503)
Q Consensus 489 ~ls~~ 493 (503)
++|..
T Consensus 162 ~~P~~ 166 (188)
T d1fkma2 162 NPPTK 166 (188)
T ss_dssp SCSCT
T ss_pred cCCCC
Confidence 87754
No 3
>d1udxa3 d.242.1.1 (A:341-416) Obg GTP-binding protein C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=47.52 E-value=5.8 Score=29.36 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=32.6
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHHHHhhcHHHHHHHH
Q psy7828 17 TLFQRLVVSPCIKESDFKSTLLESIKNVGIETQIRNT 53 (503)
Q Consensus 17 ~~~q~~~~~~~v~~~~~~~~l~~~~~~~g~e~~l~n~ 53 (503)
+.+.+++++.+.+.++-...+++.|+..|++.+|+++
T Consensus 19 ~~ier~~~~t~~~~~e~~~~f~~~l~~~Gv~~~L~~~ 55 (76)
T d1udxa3 19 PEVERYLARIKGDLMEAAGYLQEVFRRQGVEAALRAK 55 (76)
T ss_dssp HHHHHHHTTEEECTGGGHHHHHHHHHHTTHHHHHHTT
T ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHCChHHHHHHc
Confidence 4567888888999999999999999999999999874
No 4
>d1dxsa_ a.60.1.2 (A:) C-terminal domain of p73 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.75 E-value=22 Score=24.35 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=17.7
Q ss_pred HHhhhhcCCCcchHHHHHHHh
Q psy7828 226 AQEFLKKGSPRCLRGKIWCQV 246 (503)
Q Consensus 226 l~~l~r~GIP~~lR~~VW~~L 246 (503)
...+.+-|||.+.|..+|+.+
T Consensus 34 ~eDL~~lGI~~~hr~kilk~i 54 (57)
T d1dxsa_ 34 IEDLGALKIPEQYRMTIWRGL 54 (57)
T ss_dssp HHHHHHTTCCTTTHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHH
Confidence 345777899999999999976
No 5
>d1ohua_ f.1.4.1 (A:) Apoptosis regulator ced-9 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=23.73 E-value=66 Score=26.87 Aligned_cols=27 Identities=11% Similarity=0.234 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy7828 75 TYLRKAQFQWEKRIQKSLNSMCNEIGI 101 (503)
Q Consensus 75 ~~~~~a~~~w~~~~~~~~~~~~~~~~~ 101 (503)
.-||++-..-|++-.+.+++||+.+++
T Consensus 44 ~~Lr~vg~elE~~h~~~f~~~~~qL~i 70 (172)
T d1ohua_ 44 EMMRVMGTIFEKKHAENFETFSEQLLA 70 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 569999999999999999999999995
No 6
>d1rg6a_ a.60.1.2 (A:) C-terminal domain of p63 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.36 E-value=32 Score=24.57 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=17.9
Q ss_pred HHhhhhcCCCcchHHHHHHHhh
Q psy7828 226 AQEFLKKGSPRCLRGKIWCQVL 247 (503)
Q Consensus 226 l~~l~r~GIP~~lR~~VW~~LL 247 (503)
+..+.+--||.+.|..+|+-++
T Consensus 38 leDL~~mkIp~~~r~~IWK~l~ 59 (67)
T d1rg6a_ 38 MDDLASLKIPEQFRHAIWKGIL 59 (67)
T ss_dssp HHHHHTTTCCTHHHHHHHHHHH
T ss_pred HHHHHcCcCcHHHHHHHHHHHH
Confidence 4455555899999999999986
No 7
>d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]}
Probab=16.88 E-value=53 Score=30.16 Aligned_cols=64 Identities=17% Similarity=0.230 Sum_probs=43.5
Q ss_pred CCChhhHHHHHHHHHHhhcHHHHHHHHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q psy7828 27 CIKESDFKSTLLESIKNVGIETQIRNTVFHWMRSHKIDLDSNSWAEPLTYLRKAQFQWEKRIQKSL 92 (503)
Q Consensus 27 ~v~~~~~~~~l~~~~~~~g~e~~l~n~v~~~~~~~~~~~~~~~~~~pl~~~~~a~~~w~~~~~~~~ 92 (503)
-+..++|++.+..=+..-++.|.+|.+...-+|..- ...+...+|..+++.|+..=.+++.+.+
T Consensus 233 G~~~e~i~~ai~~GV~KiNi~T~l~~a~~~~~~~~l--~~~~~~~d~~~~~~~~~~a~~~~v~~~i 296 (305)
T d1rvga_ 233 GIHPEDIKKAISLGIAKINTDTDLRLAFTALIREAL--NKNPKEFDPRKYLGPAREAVKEVVKSRM 296 (305)
T ss_dssp CCCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHH--HHCTTCCCTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCeEEEEeChHHHHHHHHHHHHHH--HhCcCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666555566688999999888777652 1123578999999999866666555544
No 8
>d1w3ex1 d.79.3.1 (X:1-98) Eukaryotic ribosomal protein L30 (L30e) {Archaeon Thermococcus celer [TaxId: 2264]}
Probab=15.35 E-value=79 Score=23.61 Aligned_cols=71 Identities=14% Similarity=0.160 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHhhcHHHHHHHHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCCCCC
Q psy7828 32 DFKSTLLESIKNVGIETQIRNTVFHWMRSHKIDLDSNSWAEPLTYLRKAQFQWEKRIQKSLNSMCNEIGIQLSRFRLPSD 111 (503)
Q Consensus 32 ~~~~~l~~~~~~~g~e~~l~n~v~~~~~~~~~~~~~~~~~~pl~~~~~a~~~w~~~~~~~~~~~~~~~~~~l~~~r~~~~ 111 (503)
||..+|+.++|...+-.-.+... ..++......---....| .++.+.+..+|++.++|+..... +
T Consensus 2 d~~~~L~~a~kaGklv~G~~~v~-kal~~gkaklVilA~D~~------------~~~~~~i~~~c~~~~Ip~~~~~~--t 66 (98)
T d1w3ex1 2 DFAFELRKAQDTGKIVMGARKSI-QYAKMGGAKLIIVARNAR------------PDIKEDIEYYARLSGIAVYEFEG--T 66 (98)
T ss_dssp CHHHHHHHHHHHSEEEESHHHHH-HHHHHTCCSEEEEETTSC------------HHHHHHHHHHHHHHTCEEEEESS--C
T ss_pred CHHHHHHHHHHhCCEEEcHHHHH-HHHHcCCccEEEEECCCC------------HHHHHHHHHHHHhcCCCeEEECC--C
Confidence 57788999999833333332222 445555310000001111 46888999999999999955332 3
Q ss_pred hhhhhh
Q psy7828 112 RDDMKD 117 (503)
Q Consensus 112 ~~~~~~ 117 (503)
++||..
T Consensus 67 ~~eLG~ 72 (98)
T d1w3ex1 67 SVELGT 72 (98)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 9
>d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]}
Probab=15.06 E-value=43 Score=30.52 Aligned_cols=66 Identities=11% Similarity=0.181 Sum_probs=47.0
Q ss_pred CCChhhHHHHHHHHHHhhcHHHHHHHHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q psy7828 27 CIKESDFKSTLLESIKNVGIETQIRNTVFHWMRSHKIDLDSNSWAEPLTYLRKAQFQWEKRIQKSLNS 94 (503)
Q Consensus 27 ~v~~~~~~~~l~~~~~~~g~e~~l~n~v~~~~~~~~~~~~~~~~~~pl~~~~~a~~~w~~~~~~~~~~ 94 (503)
-++-++|++.+..=+..-++-|.+|++...-+|... ...+...+|..|+++|+....+.+.+.++-
T Consensus 211 G~~~e~i~~ai~~Gi~KiNi~T~l~~a~~~~~~~~l--~~n~~~~d~~~~~~~~~~a~~~~v~~~i~~ 276 (284)
T d1gvfa_ 211 DVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWF--AENPQGNDPRYYMRVGMDAMKEVVRNKINV 276 (284)
T ss_dssp TCCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHH--HHCTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCeEEEEechHHHHHHHHHHHHHH--HhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666766666555566778999998888777652 112346799999999999888887766543
No 10
>d1jhda2 c.26.1.5 (A:174-396) ATP sulfurylase catalytic domain {Sulfur-oxidizing endosymbiont of Riftia pachyptila [TaxId: 35843]}
Probab=13.80 E-value=57 Score=27.72 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=25.7
Q ss_pred CChHHHHhhhhcCC--Ccc-hHHHHHHHhhCCCCCCCChHHHHHH
Q psy7828 221 KHAPVAQEFLKKGS--PRC-LRGKIWCQVLGSEATPDNSKYFEQL 262 (503)
Q Consensus 221 ~~~~~l~~l~r~GI--P~~-lR~~VW~~LLg~~~~~~~~~~Ye~L 262 (503)
-++.++|++++.|. |+. .++.||..+. .+|+.|
T Consensus 186 ISST~IR~~l~~G~~ip~~l~~p~V~~yI~---------~~y~~~ 221 (223)
T d1jhda2 186 LSGTKVREMLGQGIAPPPEFSRPEVAKILM---------DYYQSI 221 (223)
T ss_dssp CCHHHHHHHHHTTCCCCTTTCCHHHHHHHH---------HHHHHH
T ss_pred eCHHHHHHHHHCcCCCCcccCCHHHHHHHH---------HHHHhc
Confidence 35788999999995 554 4899999996 567765
Done!