RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7828
(503 letters)
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural
genomics consortium, TBC D SGC, hydrolase activator;
1.90A {Homo sapiens}
Length = 294
Score = 94.3 bits (234), Expect = 1e-21
Identities = 44/273 (16%), Positives = 90/273 (32%), Gaps = 43/273 (15%)
Query: 211 ITLGEKVLNSKHAPVAQEFLKKGSPRCLRGKIWCQVLGSEATPDNSKYFEQLKSSVLTYD 270
I L + L+++ + + P R +W +VL P + + + + Y
Sbjct: 31 ILLKDDRLDTEK--LCTFSQRFPLPSMYRALVW-KVLLGILPPHHESHAKVMMYRKEQYL 87
Query: 271 LLIDKLTIKDVQLTASNDDQYFVFEDLLYQILLCFSRDTEILSIFEHSSASPLYGPLKNK 330
++ L + A+ + ++ L L S + E
Sbjct: 88 DVLHALKVVRFVSDATPQAEVYLRMYQLESGKLPRSPSFPLEPDDE-------------- 133
Query: 331 NTNTENLVVYPPSGIIPFHGFTMYATPFCYLYDDVISLYFTFRAFYLRYFYHLHQVSSNE 390
F A + +D + Y+ R F +
Sbjct: 134 -------------------VFLAIAKAMEEMVEDSVDCYWITRRFVNQLNTKYRD----- 169
Query: 391 QGILSLCILFHRLLQRYEPQLFLHFKTIHIHPIKIVFKWIMRCFSGHLPPDQILYLWDLI 450
+ L F + L + +L H + P W RCF+G LP + +WD +
Sbjct: 170 -SLPQLPKAFEQYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKV 228
Query: 451 LAYDSLEIISILAVAILSFRRENLMQVDTLQNV 483
++ S +I+ +AV IL + +M +++ + +
Sbjct: 229 VS-GSCKILVFVAVEILLTFKIKVMALNSAEKI 260
>2qq8_A TBC1 domain family member 14; structural genomics consortium,
RAB-GAP, SGC, GTPase activation, hydrolase activator;
2.00A {Homo sapiens}
Length = 334
Score = 67.5 bits (165), Expect = 2e-12
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 2/99 (2%)
Query: 381 YHLHQVSSNEQGILSLCI-LFHRLLQRYEPQLFLHFKTIHIHPIKIVFKWIMRCFSGHLP 439
+ G++ F + P+LF HFK ++ P + WI +S LP
Sbjct: 184 PCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLP 243
Query: 440 PDQILYLWDLILAYDSLEIISILAVAILSFRRENLMQVD 478
D +WD+ D E + A+ IL + L ++D
Sbjct: 244 LDLACRIWDVFC-RDGEEFLFRTALGILKLFEDILTKMD 281
Score = 32.1 bits (73), Expect = 0.42
Identities = 10/48 (20%), Positives = 20/48 (41%)
Query: 228 EFLKKGSPRCLRGKIWCQVLGSEATPDNSKYFEQLKSSVLTYDLLIDK 275
+ +G P +RGK+W +G+E + + L + + L
Sbjct: 43 DLWWQGIPPSVRGKVWSLAIGNELNITHELFDICLARAKERWRSLSTG 90
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics
consortium, SGC, alternative splicing, GTPase
activation, phosphoprotein; 2.30A {Homo sapiens}
Length = 310
Score = 64.3 bits (157), Expect = 1e-11
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 400 FHRLLQRYEPQLFLHFKTIHIHPIKIVFKWIMRCFSGHLPPDQILYLWDLILAYDSLEII 459
RL+Q P L HF +++ +W + F+ P + ++ DL+L + L II
Sbjct: 165 LERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLL-CEGLNII 223
Query: 460 SILAVAILSFRRENLMQVD 478
+A+A+L +E+L+Q D
Sbjct: 224 FHVALALLKTSKEDLLQAD 242
Score = 40.1 bits (94), Expect = 0.001
Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 9/97 (9%)
Query: 220 SKHAPVAQEFLKKGSPRCLRGKIWCQVLGSEATPDNSKYFEQLKSSVLTYDLLIDKLTIK 279
+K G P LR ++W + G + L + + +I +
Sbjct: 20 GARPKGLSTLVKSGVPEALRAEVWQLLAGCHDNQAMLDRYRILITKDSAQESVIT----R 75
Query: 280 DVQLTASN----DDQYFVFEDLLYQILLCFS-RDTEI 311
D+ T D ++ LY+I +S D +I
Sbjct: 76 DIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDI 112
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase
activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Length = 331
Score = 64.4 bits (157), Expect = 2e-11
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 400 FHRLLQRYEPQLFLHFKTIHIHPIKIVFKWIMRCFSGHLPPDQILYLWDLILAYDSLEII 459
RLL Y L+ H + I P W + F+ P + ++D+I E+I
Sbjct: 199 LSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIF-LQGTEVI 257
Query: 460 SILAVAILSFRRENLMQVDTLQNV 483
+A+++L + ++Q + L+ +
Sbjct: 258 FKVALSLLGSHKPLILQHENLETI 281
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular
trafficking, endocytosis, hydrolase, GTPase activation;
1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1
PDB: 2g77_A*
Length = 396
Score = 63.1 bits (153), Expect = 7e-11
Identities = 39/274 (14%), Positives = 85/274 (31%), Gaps = 51/274 (18%)
Query: 232 KGSPRCLRGKIWCQVLG----------SEATPDNSKYFEQLKSSV---LTYDLLIDKLTI 278
G P+ R +W ++G +Y + LK + + D+
Sbjct: 32 NGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHSRDIPTWHQIE 91
Query: 279 KDVQLTASNDD--QYFVFEDLLYQILLCFSRDTEILSIFEHSSA------SPLYGPLKNK 330
D+ T + Q+ ++ L +IL ++ H ++ + L P
Sbjct: 92 IDIPRTNPHIPLYQFKSVQNSLQRILYLWAI--------RHPASGYVQGINDLVTPF--- 140
Query: 331 NTNTENLVVYPPSGIIPFHGFTMYATPFCYLYDDVISL------YFTFRAF--YLRYFYH 382
+ + P + D ++ + Y
Sbjct: 141 ------FETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNY- 193
Query: 383 LHQVSSNEQGILSLCILFHRLLQRYEPQLFLHFKTIHIHPIKIVFKWIMRCFSGHLPPDQ 442
+ GIL +L++R + L+ HF+ H+ I+ F+W+
Sbjct: 194 ----IHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGT 249
Query: 443 ILYLWDLILAYDSLEIISILAVAILSFRRENLMQ 476
++ +WD L+ S E+ S +++ +
Sbjct: 250 VIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPT 283
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator,
structural genomics, structural genomics consortium,
SGC, hydrolase activator; 2.10A {Homo sapiens} PDB:
3dzx_A
Length = 345
Score = 59.6 bits (144), Expect = 7e-10
Identities = 36/295 (12%), Positives = 87/295 (29%), Gaps = 43/295 (14%)
Query: 207 ESERITLGEKVLNSKHAPVA--QEFLKKGSPRCLRGKIWCQVLGSEATPDNSKYFEQLKS 264
E+ R+ +++L + + + G P+ +R W + G + + L+
Sbjct: 22 EASRLDKFKQLLAGPNTDLEELRRLSWSGIPKPVRPMTWKLLSGY-LPANVDRRPATLQR 80
Query: 265 SVLTYDLLIDKLTI---------------KDVQLTASNDDQYFVFE--DLLYQILLCFSR 307
Y I+ D+ S + + ++ +IL ++
Sbjct: 81 KQKEYFAFIEHYYDSRNDEVHQDTYRQIHIDIPRM-SPEALILQPKVTEIFERILFIWAI 139
Query: 308 DTEILSIFE--HSSASPLYGPLKNKNTNTENLVVYPPSGIIPFHGFTMYATPFCYLYDDV 365
+ + +P + + E + S +
Sbjct: 140 RHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVS----------GVPAEVLCNIEA 189
Query: 366 ISLYFTFRAF--YLRYFYHLHQVSSNEQGILSLCILFHRLLQRYEPQLFLHFKTIHIHPI 423
+ Y+ ++ Y Q GI + L+ R + Q+ H + +
Sbjct: 190 DT-YWCMSKLLDGIQDNYTFAQ-----PGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYL 243
Query: 424 KIVFKWIMRCFSGHLPPDQILYLWDLILA--YDSLEIISILAVAILSFRRENLMQ 476
+ F+W+ +P + LWD + + A L R+ +++
Sbjct: 244 QFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILE 298
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.6 bits (133), Expect = 3e-08
Identities = 63/468 (13%), Positives = 129/468 (27%), Gaps = 136/468 (29%)
Query: 34 KSTL-LESIKNVGIETQIRNTVFHWMRSHKIDLDSNSWAEPLTYL-RKAQFQWEKRIQKS 91
K+ + L+ + ++ ++ +F W+ + + E L L + W R S
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIF-WLNLKNCN-SPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 92 LN--SMCNEIGIQLSRFRLPSDR-------DDMKDKWT---------------------- 120
N + I +L R ++++
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280
Query: 121 --ELSTYEVDLTQYRPVYAPKDFLEVL----------------------ISLKSSNYRSV 156
+T + L + P + +L +S+ + + R
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR-- 338
Query: 157 EGEGSWDFTQ----------IPLKIKSLS--ELRQLYKELARGESVIGTNSYNNPNPYFN 204
+G +WD + I + L E R+++ L+ + F
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-----V-----------FP 382
Query: 205 ALESERITLGEKVL----NSKHAPVAQEFLKKGSPRCLRGKIWCQVLGSEATPDNSKYFE 260
S I +L + K L K + S S Y E
Sbjct: 383 --PSAHIP--TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS----IPSIYLE 434
Query: 261 QLKSSVLTYDL---LIDKLTIKDV----QLTASNDDQYFVFEDLLYQILLCFSRDTEILS 313
Y L ++D I L DQYF + + + L E ++
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF-YSHIGHH--LKNIEHPERMT 491
Query: 314 IFEHSSASPLY---GPLKNKNTNTENLVVYPPSGIIPFHGFTMYA---TPFCYLYDDVIS 367
+F ++ L+ K + S + Y Y+ +++
Sbjct: 492 LFRM-----VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546
Query: 368 LYFTFRAFYLRYFYHLHQVSSNEQGILSLCILF---------HRLLQR 406
F + +L + S +L + ++ H+ +QR
Sbjct: 547 AILD---FLPKIEENL--ICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 39.8 bits (92), Expect = 0.002
Identities = 62/516 (12%), Positives = 137/516 (26%), Gaps = 153/516 (29%)
Query: 51 RNTVFHWMRSHKIDLDSNSWAE-PLTYLRKAQF-------QWEKRIQKSLNSMCNEIGIQ 102
++ + + + + D + P + L K + + ++ ++
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 103 LSRFRLPSDRDD---MKDKW-TELSTYEVDLTQY----------------RPVYAPKDFL 142
+ +F R + + TE + Y V + +L
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138
Query: 143 EV---LISLKSSNYRSVEGEG----SW-------DFTQIP--------LKIKSLSELRQL 180
++ L+ L+ + ++G +W + L +K+ + +
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 181 YKELARGESVIGTNSYNNPNPYFNALESERITLGEKVLNSKHAPVAQEFLKKGSPRCL-- 238
+ L + I N + + N RI + L K CL
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSN--IKLRIHSIQAELRRL-------LKSKPYENCLLV 249
Query: 239 -----RGKIWCQVLGSEATPDNSKYFEQLKSSVLTYDLLIDKLTIKDVQLTASNDDQYFV 293
K W F L +L LT + Q+T
Sbjct: 250 LLNVQNAKAW-------------NAFN-LSCKIL--------LTTRFKQVTDFLSAAT-T 286
Query: 294 FEDLLYQILLCFSRDTEILSIFEHSSASPLYGPLKNKNTNTENLVVYPPS--GIIPFHGF 351
L + + D E+ S+ LK + ++L P P
Sbjct: 287 THISLDHHSMTLTPD-EVKSLL-----------LKYLDCRPQDL---PREVLTTNPRR-- 329
Query: 352 TMYATPFCYLYDDVISLYFTF-RAFYLRYFYHLHQVSSNEQGILSLCILFHRLLQRYEPQ 410
+S+ R + H I+ + +L+ E +
Sbjct: 330 --------------LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL---NVLEPAEYR 372
Query: 411 LFLHFKTIHIHP--IKIVFKWIMRCFSGHLPPDQILYLWDLILAYDSLEIISILAVAILS 468
F + + P I P + +W ++ D + +++ L L
Sbjct: 373 K--MFDRLSVFPPSAHI-------------PTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 469 FRREN-------LMQVDTLQNVEVGYEI---LYGRY 494
++ + ++ +E Y + + Y
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 2e-07
Identities = 88/485 (18%), Positives = 144/485 (29%), Gaps = 174/485 (35%)
Query: 60 SHKIDLDSNSW--AEPLTYLRKAQFQWEKRIQKSLNSMCNEIGIQLSRFRLPSDRDDMKD 117
H + + + S+ A L + QF K L P++ D
Sbjct: 17 EHVLLVPTASFFIASQL----QEQFN------KILPE--------------PTEGFAADD 52
Query: 118 KWTELSTYEVDLTQYRPVYAPKDFLEVLISLKSSNYRSVEGEGSWDFTQIPLKIKSLSEL 177
E +T +L FL + SL VE F Q+ L + L+E
Sbjct: 53 ---EPTT-PAEL------VG--KFLGYVSSL-------VEPSKVGQFDQV-LNL-CLTEF 91
Query: 178 RQLYKELARGE--SVIGTNSYNNPNP----------YFNALESERITLGE-------KVL 218
Y L + ++ N Y A + + + +
Sbjct: 92 ENCY--LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 219 NSKHAPVAQEFLKKGSPRCLRGKIWCQVLGSEATPDNSKYFEQLKSSVLTYDLLIDKLTI 278
+A + F G G Q G+ YFE+L+ TY +L+ L I
Sbjct: 150 GEGNAQLVAIF---G------G----Q--GN-----TDDYFEELRDLYQTYHVLVGDL-I 188
Query: 279 KDV-----QLTASNDDQYFVFEDLLYQILLCFSRDTEILSIFEHSSASPLYGPLKNKNTN 333
K +L + D VF L IL E+ S +P +
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGL-----------NILEWLENPSNTP----------D 227
Query: 334 TENLVVYPPSGIIPFHGFTMYATPFCYLYDDVISLYFTFRAFYLR---YFYHLHQVSSNE 390
+ L+ P S P G A Y T + +L + +
Sbjct: 228 KDYLLSIPIS--CPLIGVIQLA---HY--------VVTAKLLGFTPGELRSYLKGATGHS 274
Query: 391 QGILS-LCIL-------FHRLLQRYEPQLFLHFKTIHIHPIKIVFKWI-MRCFSGHLPPD 441
QG+++ + I F +++ I ++F +I +RC P
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKA---------------ITVLF-FIGVRC-YEAYPN- 316
Query: 442 QILYLWDLILAYDSLEIISILAVAILSFRRENLMQVDTL---QNVEVGYEILYGRYIPAP 498
L IL DSLE + +LS QV N ++PA
Sbjct: 317 --TSLPPSILE-DSLENNEGVPSPMLSISNLTQEQVQDYVNKTN----------SHLPAG 363
Query: 499 RWIVL 503
+ + +
Sbjct: 364 KQVEI 368
Score = 28.5 bits (63), Expect = 6.6
Identities = 42/236 (17%), Positives = 61/236 (25%), Gaps = 103/236 (43%)
Query: 12 SHHSMTLF---QRLVVS--PCIKESDFKSTLLESIKNVGIETQIRNTVFHWMRSHKIDLD 66
++L + LVVS P +L G+ +R K
Sbjct: 364 KQVEISLVNGAKNLVVSGPP--------QSL------YGLNLTLRKA--------KAPSG 401
Query: 67 SNSWAEPLTYLRKAQFQWEKRIQKSLNSMCNEIGIQLSRFRLP------SD--------- 111
+ P + RK +F RF LP S
Sbjct: 402 LDQSRIPFS-ERKLKFSN--------------------RF-LPVASPFHSHLLVPASDLI 439
Query: 112 RDDMKDKWTELSTYEVDLTQYRPVYAPKDFLEVLISLKSSNYRSVEGEGS---------- 161
D+ + ++ + PVY D S+ R + G S
Sbjct: 440 NKDLVKNNVSFNAKDIQI----PVYDTFD---------GSDLRVLSGSISERIVDCIIRL 486
Query: 162 ---WD------FTQI----PLKIKSLSELRQLYKELARGESVI--GTNSYNNPNPY 202
W+ T I P L L K+ G VI GT N + Y
Sbjct: 487 PVKWETTTQFKATHILDFGPGGASGLGVLTHRNKD-GTGVRVIVAGTLDINPDDDY 541
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 31.8 bits (71), Expect = 0.54
Identities = 19/123 (15%), Positives = 41/123 (33%), Gaps = 12/123 (9%)
Query: 298 LYQILLCFSRDTEILSIFEHSSASPLYG----PLKNKNTNTENLVVYPPSGIIPFHGFTM 353
+Q R+ ++ + + +YG ++NK L V G+ +
Sbjct: 175 WWQEHRGMLREDAMMEYLKIAQDLEMYGVNYFEIRNKKNTELWLGVDA-LGLNIYEKDDK 233
Query: 354 YATPFCYLYDDVISLYFTFRAFYLRYFYHLHQV-------SSNEQGILSLCILFHRLLQR 406
+ + ++ ++ F R F ++ + IL+LC+ H L R
Sbjct: 234 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 293
Query: 407 YEP 409
Sbjct: 294 RRK 296
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.6
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 11/41 (26%)
Query: 117 DKWTELSTYEVDLTQYRPVYAPKDFLEVLISLKSSNYRSVE 157
+K L + L Y AP +++K+ ++E
Sbjct: 18 EK-QALKKLQASLKLYADDSAPA------LAIKA----TME 47
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor,
chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Length = 258
Score = 29.9 bits (66), Expect = 1.6
Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 76 YLRKAQFQWEKRIQKSLNSMCNEIGIQLSRFRLPSDRDDMKDKWTELSTYEVDLTQYRPV 135
Y+ + E+ + L++ + L R +LPS+ ++ + Y + Q+R
Sbjct: 164 YIAENSSANEQAALRQLDAALADTD-NLKR-QLPSEDARLQQFENAVLAYRDAVRQFRDA 221
Query: 136 YA 137
A
Sbjct: 222 VA 223
>3v0s_A Perakine reductase; AKR superfamily, oxidoreductase; HET: MLZ M3L
MLY ATR; 1.77A {Rauvolfia serpentina} PDB: 3v0u_A
3v0t_A* 3uyi_A*
Length = 337
Score = 29.9 bits (67), Expect = 1.8
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 72 EPLTYLRKAQFQWEKRIQKSLNSMCNEIGIQLSRFRLPSDRDDMKDKWTELSTYEVDLTQ 131
P+T L+ W + I+ + +C ++GI + + P R K + S E +
Sbjct: 170 HPVTALQIEYSLWTRDIEDEIVPLCRQLGIGIVPYS-PIGRGLFWGKAIKESLPENSVLT 228
Query: 132 YRPVYAPKDF 141
P + ++
Sbjct: 229 SHPRFVGENL 238
>3my2_A Lipopolysaccharide export system protein LPTC; lipopolysaccharide
export pathway, structural genomics scottish structural
proteomics facility; 2.20A {Escherichia coli}
Length = 175
Score = 29.2 bits (65), Expect = 1.9
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 379 YFYHLHQVSSNEQGILSLCILFHRLLQRYEPQLFLHFK--TIHIHPIKIVFKWIMRCFSG 436
H + N +G LS L + ++ Y Q F + + W ++
Sbjct: 27 KSEHTDTLVYNPEGALSY-RLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKA 85
Query: 437 HLPPDQILYLWD 448
L D++LYL+
Sbjct: 86 KLTNDRMLYLYG 97
>2hlj_A Hypothetical protein; putative thioesterase, structural genomics,
joint center for structural genomics, JCSG, protein
structure initiative; HET: MSE; 2.00A {Pseudomonas
putida} SCOP: d.38.1.1
Length = 157
Score = 27.9 bits (61), Expect = 4.5
Identities = 15/105 (14%), Positives = 27/105 (25%), Gaps = 6/105 (5%)
Query: 54 VFHWMRSHKIDLDSNSWAEPLTYLRKAQFQWEK--RIQKSLNSMCNEIGIQLSRFR---- 107
M +D DS + + +A + ++ + +G R
Sbjct: 36 TDALMDRIGLDADSRGQSGNSLFTLEAHINYLHEVKLGTEVWVQTQILGFDRKRLHVYHS 95
Query: 108 LPSDRDDMKDKWTELSTYEVDLTQYRPVYAPKDFLEVLISLKSSN 152
L D +E VDL + + L L
Sbjct: 96 LHRAGFDEVLAASEQMLLHVDLAGPQSAPFGHTTVCRLNHLVEQQ 140
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever,
rochalimaea, LYME disease, ALS collaborative
crystallography, DNA replication; 2.50A {Bartonella
henselae}
Length = 169
Score = 27.9 bits (62), Expect = 5.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 217 VLNSKHAPVAQEFLKKGSPRCLRGKI 242
V N A +A ++L KGS + GK+
Sbjct: 77 VFNPHFAKIALQYLHKGSKVYIEGKL 102
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase;
2.60A {Coxiella burnetii}
Length = 158
Score = 27.8 bits (62), Expect = 5.7
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 217 VLNSKHAPVAQEFLKKGSPRCLRGKI 242
++ A + E+L+KGS + G +
Sbjct: 61 AFFNRLAEIVGEYLRKGSKIYIEGSL 86
>3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure
initiative, NE SGX research center for structural
genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas
aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A*
Length = 326
Score = 28.3 bits (64), Expect = 5.8
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 425 IVFKWIMRCFSGHLPPDQILYLWDLILAY 453
I I+ F HL +Q D L +
Sbjct: 131 IRHGLIL-SFLRHLSEEQAQKTLDQALPF 158
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate
binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A
{Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2
d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Length = 830
Score = 28.5 bits (64), Expect = 6.8
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 10/48 (20%)
Query: 412 FLHFKTIHIHPIKIVFKWIMRC-FSG------HLPPDQILYLWDLILA 452
+ K + I I + MR + G + D LWD +
Sbjct: 631 YFRAKNVVIGGIPV---TAMRLSYVGELGWELYTSADNGQRLWDALWQ 675
>3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A
{Arthrobacter aurescens}
Length = 343
Score = 28.3 bits (64), Expect = 6.9
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 425 IVFKWIMRCFSGHLPPDQILYLWDLILAYD 454
+ I F + D L + D +LA
Sbjct: 134 VSTLLIA-AFLRDMSEDSALEVLDQLLAMH 162
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A
{Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB:
1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A
2zpy_A 1gc7_A 1gc6_A 1ni2_A
Length = 294
Score = 27.6 bits (61), Expect = 9.1
Identities = 21/125 (16%), Positives = 53/125 (42%), Gaps = 15/125 (12%)
Query: 298 LYQILLCFSRDTEILSIFEHSSASPLYG----PLKNKNTNTENLVVYPPSGIIPFHGFTM 353
++ R+ +L + + +YG +KNK + L V G+ +
Sbjct: 172 WHEEHRGMLREDAVLEYLKIAQDLEMYGVNYFSIKNKKGSELWLGVDA-LGLNIYEQNDR 230
Query: 354 YATPFCYLYDDVISLYFTFRAFYLR--------YFYHLHQVSSNEQGILSLCILFHRL-L 404
+ + ++ ++ F + F ++ + ++ ++ N++ IL+LC+ H L +
Sbjct: 231 LTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKR-ILALCMGNHELYM 289
Query: 405 QRYEP 409
+R +P
Sbjct: 290 RRRKP 294
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.426
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,713,093
Number of extensions: 450538
Number of successful extensions: 966
Number of sequences better than 10.0: 1
Number of HSP's gapped: 953
Number of HSP's successfully gapped: 30
Length of query: 503
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 405
Effective length of database: 3,965,535
Effective search space: 1606041675
Effective search space used: 1606041675
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.8 bits)