RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7828
         (503 letters)



>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 188

 Score = 62.1 bits (150), Expect = 6e-12
 Identities = 17/68 (25%), Positives = 32/68 (47%)

Query: 392 GILSLCILFHRLLQRYEPQLFLHFKTIHIHPIKIVFKWIMRCFSGHLPPDQILYLWDLIL 451
           GIL       +L++R +  L+ HF+  H+  I+  F+W+            ++ +WD  L
Sbjct: 4   GILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYL 63

Query: 452 AYDSLEII 459
           +  S E+ 
Sbjct: 64  SETSQEVT 71


>d1ef1a2 b.55.1.5 (A:199-297) Moesin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 99

 Score = 32.1 bits (73), Expect = 0.029
 Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 13/99 (13%)

Query: 323 LYG----PLKNKNTNTENLVVYPPSGIIPFHGFTMYATPFCYLYDDVISLYFTFRAFYLR 378
           +YG     +KNK  +   L V    G+  +           + + ++ ++ F  + F ++
Sbjct: 2   MYGVNYFSIKNKKGSELWLGVDA-LGLNIYEQNDRLTPKIGFPWSEIRNISFNDKKFVIK 60

Query: 379 YFY-----HLHQVSSNE--QGILSLCILFHRL-LQRYEP 409
                    +         + IL+LC+  H L ++R +P
Sbjct: 61  PIDKKAPDFVFYAPRLRINKRILALCMGNHELYMRRRKP 99


>d1h4ra2 b.55.1.5 (A:215-313) Merlin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 99

 Score = 28.6 bits (64), Expect = 0.59
 Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 16/94 (17%)

Query: 323 LYG----PLKNKNTNTENLVVYPPSGIIPFHGFTMYATPFCYLYDDVISLYFTFRAFYLR 378
           +YG     ++NK      L V    G+  +           + ++++ ++ ++ + F ++
Sbjct: 2   MYGVNYFAIRNKKGTELLLGVDA-LGLHIYDPENRLTPKISFPWNEIRNISYSDKEFTIK 60

Query: 379 Y---------FYHLHQVSSNEQGILSLCILFHRL 403
                     F       +  + IL LCI  H L
Sbjct: 61  PLDKKIDVFKFNSSKLRVN--KLILQLCIGNHDL 92


>d2chha1 b.115.1.1 (A:1-113) Mannose-specific lectin RS-IIL
           {Ralstonia solanacearum [TaxId: 305]}
          Length = 113

 Score = 27.9 bits (62), Expect = 1.1
 Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 7/66 (10%)

Query: 197 NNPNPYFNALESERITLGEKVLNSKHAPVAQEFLKKGSPRCLR-------GKIWCQVLGS 249
           N     F    +    LG +VLNS    +  +    G P  L         K+   ++GS
Sbjct: 34  NVVKATFTGSGTSDKLLGSQVLNSGSGAIKIQVSVNGKPSDLVSNQTILANKLNFAMVGS 93

Query: 250 EATPDN 255
           E   DN
Sbjct: 94  EDGTDN 99


>d1k8ta_ e.41.1.1 (A:) Adenylylcyclase toxin (the edema factor)
           {Bacillus anthracis [TaxId: 1392]}
          Length = 509

 Score = 29.1 bits (65), Expect = 1.2
 Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 6/89 (6%)

Query: 46  IETQIRNT--VFHWMRSH----KIDLDSNSWAEPLTYLRKAQFQWEKRIQKSLNSMCNEI 99
           IE  I     ++++ RS+      +     W +P+T  +           K+L+S+    
Sbjct: 325 IEKNITGKDYLYYFNRSYNKIAPGNKAYIEWTDPITKAKINTIPTSAEFIKNLSSIRRSS 384

Query: 100 GIQLSRFRLPSDRDDMKDKWTELSTYEVD 128
            + + +     D    K+   +++ Y  D
Sbjct: 385 NVGVYKDSGDKDEFAKKESVKKIAGYLSD 413


>d2uz9a2 c.1.9.9 (A:76-388) Guanine deaminase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 313

 Score = 27.5 bits (59), Expect = 4.0
 Identities = 9/90 (10%), Positives = 22/90 (24%)

Query: 348 FHGFTMYATPFCYLYDDVISLYFTFRAFYLRYFYHLHQVSSNEQGILSLCILFHRLLQRY 407
                            +  L    +   L    H+ +     + + +L   +      Y
Sbjct: 131 VKPIVTPRFSLSCSETLMGELGNIAKTRDLHIQSHISENRDEVEAVKNLYPSYKNYTSVY 190

Query: 408 EPQLFLHFKTIHIHPIKIVFKWIMRCFSGH 437
           +    L  KT+  H   +  + +       
Sbjct: 191 DKNNLLTNKTVMAHGCYLSAEELNVFHERG 220


>d2akja2 d.58.36.1 (A:22-174) Ferredoxin--nitrite reductase, NIR
           {Spinach (Spinacia oleracea) [TaxId: 3562]}
          Length = 153

 Score = 26.4 bits (58), Expect = 5.9
 Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 401 HRLLQRYEPQLFLHFKTIHIHPIKIVFKWIMR--CFSGHLPPDQILYLWDLILAYDS 455
                + +  + L +  +         +++MR    +G    +Q  YL  +I  Y  
Sbjct: 57  KSKHNKDDIDVRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGK 113


>d1rwha1 a.102.3.2 (A:4-372) Chondroitinase AC {Arthrobacter
           aurescens [TaxId: 43663]}
          Length = 369

 Score = 26.8 bits (59), Expect = 6.5
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 13/82 (15%)

Query: 154 RSVEGEGSWDFTQIPLKIKSLSEL--------RQLYKELARGESVIGTNSYNNPNPYFNA 205
           RS+  E +  +      I+++  L           ++ L  G   I  ++Y    P  N+
Sbjct: 293 RSISREANTGYDLGASAIEAILLLARAMDPATAARWRGLCAGW--IARDTYR---PILNS 347

Query: 206 LESERITLGEKVLNSKHAPVAQ 227
               R  L +++  +  APVA+
Sbjct: 348 ASVPRTALVKQLEATGVAPVAE 369


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.139    0.426 

Gapped
Lambda     K      H
   0.267   0.0378    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,928,669
Number of extensions: 90716
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 13
Length of query: 503
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 414
Effective length of database: 1,185,626
Effective search space: 490849164
Effective search space used: 490849164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.9 bits)