BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7829
(511 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S-
Adenosyl Homocysteine
pdb|1KR5|A Chain A, Crystal Structure Of Human L-Isoaspartyl Methyltransferase
Length = 226
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 133/220 (60%)
Query: 58 FKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAP 117
+K+ G ++L+++LR G I+T++V + DR ++A PY D S+G+ ++AP
Sbjct: 2 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP 61
Query: 118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
+ A A E L L +GAK LD+GSGSG T FA MVG TGKVIG++HI EL++ S+ N
Sbjct: 62 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNN 121
Query: 178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAP 237
+ K + LL SGRV++V D R GY EAPYD I+ G VP +++QLK GGR++ P
Sbjct: 122 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 181
Query: 238 IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQ 277
+GP Q L Q D+ D +++ L V Y + K Q
Sbjct: 182 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQ 221
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 48/74 (64%)
Query: 361 AHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST 420
A+ L+L + LH GAK L++GSGSG L A +VG TG V G++H+ ++ +S+ N+
Sbjct: 65 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRK 124
Query: 421 NHIDLIANETIEII 434
+ L+++ ++++
Sbjct: 125 DDPTLLSSGRVQLV 138
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
Query: 435 PHI----LDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA 490
PH+ L+L + LH GAK L++GSGSG L A +VG TG V G++H+ ++ +S+
Sbjct: 61 PHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVN 120
Query: 491 NISTNHIDLIANETIEII 508
N+ + L+++ ++++
Sbjct: 121 NVRKDDPTLLSSGRVQLV 138
>pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With
S-Adenosyl-L- Homocysteine
Length = 227
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 126/216 (58%), Gaps = 5/216 (2%)
Query: 58 FKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAP 117
+++ G DL+ L+D G I ++ VAQA + DR +++ PY D +G ++AP
Sbjct: 9 WRSVGANNEDLIRQLKDHGVIASDAVAQAMKETDRKHYSPRNPYMDAPQPIGGGVTISAP 68
Query: 118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTG-----KVIGVEHIPELIE 172
+ A A E L+ HL GA++LD+GSGSGY T F + G +++G+EH EL+
Sbjct: 69 HMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVR 128
Query: 173 ASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGG 232
S N++ ++ +LDSG++ IVE D R+GY P APY+ I+ G + P+ ++NQL GG
Sbjct: 129 RSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGG 188
Query: 233 RILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAY 268
R++ P+GP Q + Q D+ + ++ T L V Y
Sbjct: 189 RLIVPVGPDGGSQYMQQYDKDANGKVEMTRLMGVMY 224
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 362 HILDLCYL--NLHRGAKVLEIGSGSGYLATLMAHLVGPTG-----HVTGLEHMMDIAIES 414
H L YL +L GA++L++GSGSGYL + G + G+EH ++ S
Sbjct: 71 HAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRS 130
Query: 415 IANISTNHIDLIANETIEII 434
AN++T+ ++ + + I+
Sbjct: 131 KANLNTDDRSMLDSGQLLIV 150
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 436 HILDLCYL--NLHRGAKVLEIGSGSGYLATLMAHLVGPTG-----HVTGLEHMMDIAIES 488
H L YL +L GA++L++GSGSGYL + G + G+EH ++ S
Sbjct: 71 HAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRS 130
Query: 489 IANISTNHIDLIANETIEII 508
AN++T+ ++ + + I+
Sbjct: 131 KANLNTDDRSMLDSGQLLIV 150
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 101/203 (49%), Gaps = 14/203 (6%)
Query: 76 GKIRTERVAQAFYKVDRGNFA----NEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHL 131
G I+++RV A KV R F E Y D +GY ++A + + E L L
Sbjct: 18 GYIKSKRVIDALLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIHMVGMMCELLDLK- 76
Query: 132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRV 191
G KVL++G+G GY V A +VG G V+ +E IPEL E + R + K D V
Sbjct: 77 -PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD-----NV 130
Query: 192 RIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQID 251
++ D GY P APYD IY ++P ++ QLK GG++L P+G Q+L +
Sbjct: 131 IVIVGDGTLGYEPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVGRY--LQRLVLAE 188
Query: 252 RFHDNTLQKTDLFEVAYDAIMRK 274
+ D + K D VA+ ++ K
Sbjct: 189 KRGDEIIIK-DCGPVAFVPLVGK 210
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 428 NETIEIIPHILDLC-YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIA 485
+TI I + +C L+L G KVLEIG+G GY A + A +VG G V +E + ++A
Sbjct: 57 GQTISAIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELA 115
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIA 411
L+L G KVLEIG+G GY A + A +VG G V +E + ++A
Sbjct: 73 LDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELA 115
>pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosylmethionine
pdb|1JG3|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG3|B Chain B, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG2|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With Adenosine
pdb|1JG1|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosyl-L-Homocysteine
Length = 235
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 100/194 (51%), Gaps = 19/194 (9%)
Query: 69 VNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQ-----DVSASLGYAGVMNAPNQIADA 123
V L+ G IR++ V +AF K R + E+ Y+ D + ++AP+ +A
Sbjct: 25 VEMLKAEGIIRSKEVERAFLKYPR-YLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIM 83
Query: 124 AE--NLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKG 181
E NLK G +L++G+GSG+ + + +V V +E IPEL+E + RN+ +
Sbjct: 84 LEIANLK----PGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLERA 137
Query: 182 NKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPM 241
V ++ D +G+ P+APYDVI ++P ++ QLK GG+++ P+G
Sbjct: 138 GVK-----NVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSY 192
Query: 242 DDFQKLTQIDRFHD 255
+Q+L ++ + D
Sbjct: 193 HLWQELLEVRKTKD 206
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 332 PGEITTRDKYGRLVHGSAPDNGP-----SSERSIAHILDLCYLNLHRGAKVLEIGSGSGY 386
P ++ DKY + H P P S+ +A +L++ NL G +LE+G+GSG+
Sbjct: 47 PRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIA--NLKPGMNILEVGTGSGW 104
Query: 387 LATLMAHLV 395
A L++ +V
Sbjct: 105 NAALISEIV 113
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Query: 422 HID----LIANETIEIIPHILDLCY--LNLHRGAKVLEIGSGSGYLATLMAHLV 469
HID + A +T+ PH++ + NL G +LE+G+GSG+ A L++ +V
Sbjct: 61 HIDEPLPIPAGQTVSA-PHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIV 113
>pdb|2PBF|A Chain A, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
pdb|2PBF|B Chain B, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
Length = 227
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 109/226 (48%), Gaps = 10/226 (4%)
Query: 56 NHFKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMN 115
N +K L+ +L+ G I + V +VDRG + E PY D + + ++
Sbjct: 3 NMYKLSENNHKSLLENLKRRGIIDDDDVYNTMLQVDRGKYIKEIPYIDTPVYISHGVTIS 62
Query: 116 APNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFA----HMVGPTGKVIGVEHIPELI 171
AP+ A + + L L G++ +D+GSGSGY T A + VIG+E + +L+
Sbjct: 63 APHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLV 122
Query: 172 EASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAP----YDVIYYGGCVSEVPSRVLNQ 227
SL NI + +LL +I+ + + E +D I+ G SE+P +++
Sbjct: 123 NFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASELPEILVDL 182
Query: 228 LKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMR 273
L + G+++ PI D Q L +I + + + K LF+V + ++ +
Sbjct: 183 LAENGKLIIPIEE-DYTQVLYEITK-KNGKIIKDRLFDVCFVSLKK 226
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 31/159 (19%)
Query: 291 NLFTLMDKDSDELFS--ERVWELKQDPLYTTE------KWIPQPPGYTTPGEITTRDKYG 342
N++ L + + L +R + D +Y T K+I + P TP I+
Sbjct: 3 NMYKLSENNHKSLLENLKRRGIIDDDDVYNTMLQVDRGKYIKEIPYIDTPVYIS------ 56
Query: 343 RLVHG---SAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMA----HLV 395
HG SAP S + + ++L G++ +++GSGSGYL MA L
Sbjct: 57 ---HGVTISAPHMHALSLKRLINVL-------KPGSRAIDVGSGSGYLTVCMAIKMNVLE 106
Query: 396 GPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEII 434
+V GLE + D+ S+ NI + +L+ + +II
Sbjct: 107 NKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKII 145
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 445 LHRGAKVLEIGSGSGYLATLMA----HLVGPTGHVTGLEHMMDIAIESIANISTNHIDLI 500
L G++ +++GSGSGYL MA L +V GLE + D+ S+ NI + +L+
Sbjct: 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELL 137
Query: 501 ANETIEIIRE 510
+ +II +
Sbjct: 138 KIDNFKIIHK 147
>pdb|3LBF|A Chain A, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|B Chain B, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|C Chain C, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|D Chain D, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
Length = 210
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 17/189 (8%)
Query: 68 LVNHLRDIGKIRTERVAQAFYKVDRGNFANE----EPYQDVSASLGYAGVMNAPNQIADA 123
L++ LR G I+ E+V A V R F +E + + +++ +G ++ P +A
Sbjct: 11 LLDQLRAQG-IQDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARM 69
Query: 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK 183
E L+L ++VL++G+GSGYQT + AH+V V VE I L + R +
Sbjct: 70 TELLEL--TPQSRVLEIGTGSGYQTAILAHLVQ---HVCSVERIKGLQWQARRRLKN--- 121
Query: 184 DLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDD 243
LD V D +G+ AP+D I E+P+ ++ QL +GG ++ P+G ++
Sbjct: 122 --LDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVG--EE 177
Query: 244 FQKLTQIDR 252
Q L ++ R
Sbjct: 178 HQYLKRVRR 186
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 11/64 (17%)
Query: 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIES--------IANIST 420
L L ++VLEIG+GSGY ++AHLV HV +E + + ++ + N+ST
Sbjct: 73 LELTPQSRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKNLDLHNVST 129
Query: 421 NHID 424
H D
Sbjct: 130 RHGD 133
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 11/64 (17%)
Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIES--------IANIST 494
L L ++VLEIG+GSGY ++AHLV HV +E + + ++ + N+ST
Sbjct: 73 LELTPQSRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKNLDLHNVST 129
Query: 495 NHID 498
H D
Sbjct: 130 RHGD 133
>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase
pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransferase
Length = 317
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 18/169 (10%)
Query: 80 TERVAQAFYKVDRGNFANEE-----PYQDVSASLGY-----AGVMNAPNQIADAAENLKL 129
++ +A+AF ++ R F + Y+D+ + Y + P+ +A E + L
Sbjct: 15 SDHIAKAFLEIPREEFLTKSYPLSYVYEDI-VLVSYDDGEEYSTSSQPSLMALFMEWVGL 73
Query: 130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG 189
G +VL++G G+GY V + +VG G V+ VE+ ++ E + RN+ + L
Sbjct: 74 D--KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER-----LGIE 126
Query: 190 RVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPI 238
V V D G +PYDVI+ V EVP QLK+GGR++ PI
Sbjct: 127 NVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPI 175
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEH---MMDIA 411
SS+ S+ + + ++ L +G +VLEIG G+GY A +M+ +VG G V +E+ + +IA
Sbjct: 58 SSQPSLMALF-MEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIA 116
Query: 412 IESIANISTNHIDLIANETIEIIPHI 437
++ + ++ + + +P
Sbjct: 117 KRNVERLGIENVIFVCGDGYYGVPEF 142
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 442 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEH---MMDIAIESIANISTNHID 498
++ L +G +VLEIG G+GY A +M+ +VG G V +E+ + +IA ++ + ++
Sbjct: 70 WVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVI 129
Query: 499 LIANETIEIIREF 511
+ + + EF
Sbjct: 130 FVCGDGYYGVPEF 142
>pdb|1VBF|A Chain A, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|B Chain B, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|C Chain C, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|D Chain D, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
Length = 231
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 96/201 (47%), Gaps = 20/201 (9%)
Query: 77 KIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVD--- 133
KI+T+ +A+AF KVDR F E +D + + + + P I A NL + +D
Sbjct: 10 KIKTQELAEAFNKVDRSLFLPEN-LKDYAYAHTHEALPILPG-INTTALNLGIFXLDELD 67
Query: 134 ---GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGR 190
G KVL++G+G GY T + A +V KV+ VE + + + +K L
Sbjct: 68 LHKGQKVLEIGTGIGYYTALIAEIVD---KVVSVE-------INEKXYNYASKLLSYYNN 117
Query: 191 VRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQI 250
++++ D GY E PYD + + + QLK+GG + PIG + QKL ++
Sbjct: 118 IKLILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIXILPIG-VGRVQKLYKV 176
Query: 251 DRFHDNTLQKTDLFEVAYDAI 271
+ N+ +L EV + I
Sbjct: 177 IK-KGNSPSLENLGEVXFGRI 196
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 363 ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLV 395
I L L+LH+G KVLEIG+G GY L+A +V
Sbjct: 60 IFXLDELDLHKGQKVLEIGTGIGYYTALIAEIV 92
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 437 ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLV 469
I L L+LH+G KVLEIG+G GY L+A +V
Sbjct: 60 IFXLDELDLHKGQKVLEIGTGIGYYTALIAEIV 92
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 119 QIADAAENLK-LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
++ D + LK L +G VLD+G+G+G+ + MVG GKV ++ E++ +
Sbjct: 22 ELFDPEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEK 81
Query: 178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEV--PSRVLNQLKKGGRIL 235
++K L V +++++ + LP+ D I+ E+ P + L +LK+ +
Sbjct: 82 VNK-----LGLKNVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPF 136
Query: 236 APIGPMD 242
A + +D
Sbjct: 137 AYLAIID 143
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 366 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNH 422
L L G VL++G+G+G+ ++ +VG G V + E M++ A E + + +
Sbjct: 30 LKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKN 89
Query: 423 IDLIANETIEI 433
++++ +E +I
Sbjct: 90 VEVLKSEENKI 100
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNH 496
L L G VL++G+G+G+ ++ +VG G V + E M++ A E + + +
Sbjct: 30 LKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKN 89
Query: 497 IDLIANETIEI 507
++++ +E +I
Sbjct: 90 VEVLKSEENKI 100
>pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Target Btr309
Length = 257
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 11/157 (7%)
Query: 130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG 189
L D AK+ D+G G+G QT A V G++ G++ P+ IE N K N +
Sbjct: 43 ELTDDAKIADIGCGTGGQTLFLADYV--KGQITGIDLFPDFIEIFNENAVKANC----AD 96
Query: 190 RVRIVEADAREGYLPEAPYDVIYYGGCVSEVP-SRVLNQ----LKKGGRILAPIGPMDDF 244
RV+ + D+I+ G + + R +N+ LKKGG I
Sbjct: 97 RVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEASWFTS 156
Query: 245 QKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIH 281
++ +I+ F + + + D + R H
Sbjct: 157 ERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAH 193
>pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SVZ|B Chain B, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SXJ|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3SXJ|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
Length = 263
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 11/157 (7%)
Query: 130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG 189
L D AK+ D+G G+G QT A V G++ G++ P+ IE N K N +
Sbjct: 49 ELTDDAKIADIGCGTGGQTLFLADYV--KGQITGIDLFPDFIEIFNENAVKANC----AD 102
Query: 190 RVRIVEADAREGYLPEAPYDVIYYGGCVSEVP-SRVLNQ----LKKGGRILAPIGPMDDF 244
RV+ + D+I+ G + + R +N+ LKKGG I
Sbjct: 103 RVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEASWFTS 162
Query: 245 QKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIH 281
++ +I+ F + + + D + R H
Sbjct: 163 ERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAH 199
>pdb|1I9G|A Chain A, Crystal Structure Of An Adomet Dependent Methyltransferase
Length = 280
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI 193
GA+VL+ G+GSG T VGP G+VI E + E + RN+S D+ R+
Sbjct: 100 GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDN--WRL 157
Query: 194 VEADAREGYLPEAPYD 209
V +D + LP+ D
Sbjct: 158 VVSDLADSELPDGSVD 173
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 25/46 (54%)
Query: 374 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS 419
GA+VLE G+GSG L + VGP G V E D A + N+S
Sbjct: 100 GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVS 145
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 25/46 (54%)
Query: 448 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS 493
GA+VLE G+GSG L + VGP G V E D A + N+S
Sbjct: 100 GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVS 145
>pdb|4FR0|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With Sam
pdb|4FS8|A Chain A, The Structure Of An As(Iii) S-Adenosylmethionine
Methyltransferase: Insights Into The Mechanism Of
Arsenic Biotransformation
pdb|4FSD|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With As(Iii)
Length = 383
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 10/119 (8%)
Query: 132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS--- 188
++GA VLDLG G+G + + +VG GKVIGV+ + +E + + + + S
Sbjct: 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSR 141
Query: 189 GRVRIVE------ADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPM 241
VR ++ A A +P++ D++ CV + + L K+ R+L G +
Sbjct: 142 SNVRFLKGFIENLATAEPEGVPDSSVDIV-ISNCVCNLSTNKLALFKEIHRVLRDGGEL 199
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 374 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE 413
GA VL++G G+G L + LVG G V G++ M+D +E
Sbjct: 84 GATVLDLGCGTGRDVYLASKLVGEHGKVIGVD-MLDNQLE 122
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 448 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE 487
GA VL++G G+G L + LVG G V G++ M+D +E
Sbjct: 84 GATVLDLGCGTGRDVYLASKLVGEHGKVIGVD-MLDNQLE 122
>pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase
(Tm0748) From Thermotoga Maritima At 1.65 A Resolution
Length = 277
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 17/120 (14%)
Query: 127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLL 186
+ L + +G +++D G GSG V A VG +GKV E E + + N++K L+
Sbjct: 106 MMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG--LI 163
Query: 187 DSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVP------SRVLNQLKKGGRILAPIGP 240
+ RV I D EG+ E D ++ +VP + LK GGR A + P
Sbjct: 164 E--RVTIKVRDISEGF-DEKDVDALFL-----DVPDPWNYIDKCWEALKGGGR-FATVCP 214
>pdb|3BKX|A Chain A, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
pdb|3BKX|B Chain B, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
Length = 275
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 357 ERSIAHILDLC-YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE 405
R AH L + + G K+LEIG G G L+ ++A VG +GHVTG++
Sbjct: 26 RRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGID 75
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 448 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE 479
G K+LEIG G G L+ ++A VG +GHVTG++
Sbjct: 44 GEKILEIGCGQGDLSAVLADQVGSSGHVTGID 75
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVE 165
G K+L++G G G + V A VG +G V G++
Sbjct: 44 GEKILEIGCGQGDLSAVLADQVGSSGHVTGID 75
>pdb|1UFK|A Chain A, Crystal Structure Of Tt0836
pdb|2NXE|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXE|B Chain B, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXJ|A Chain A, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXJ|B Chain B, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXN|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With Ribosomal Protein L11
pdb|2NXC|A Chain A, Apo-Form Of T. Thermophilus Ribosomal Protein L11
Methyltransferase (Prma)
pdb|3CJQ|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|D Chain D, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|G Chain G, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJR|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Ribosomal Protein L11 (k39a) And Inhibitor
Sinefungin.
pdb|3EGV|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Trimethylated Ribosomal Protein L11
pdb|2ZBP|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Methionine
pdb|2ZBQ|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Homocysteine
pdb|2ZBR|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-adenosyl-ornithine
Length = 254
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 13/116 (11%)
Query: 123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGN 182
A + L HL G KVLDLG+GSG + A +G GK +GV+ P ++ + N +
Sbjct: 110 ALKALARHLRPGDKVLDLGTGSGV-LAIAAEKLG--GKALGVDIDPMVLPQAEANAKR-- 164
Query: 183 KDLLDSGRVRIVEADAREGYLPEAPYDVI---YYGGCVSEVPSRVLNQLKKGGRIL 235
+ R R +E + E LP P+D++ Y + + R L GGR L
Sbjct: 165 ----NGVRPRFLEG-SLEAALPFGPFDLLVANLYAELHAALAPRYREALVPGGRAL 215
>pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|C Chain C, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|E Chain E, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|G Chain G, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|I Chain I, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|K Chain K, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|M Chain M, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|O Chain O, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
Length = 254
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 13/116 (11%)
Query: 123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGN 182
A + L HL G KVLDLG+GSG + A +G GK +GV+ P ++ + N +
Sbjct: 110 ALKALARHLRPGDKVLDLGTGSGV-LAIAAEKLG--GKALGVDIDPMVLPQAEANAKR-- 164
Query: 183 KDLLDSGRVRIVEADAREGYLPEAPYDVI---YYGGCVSEVPSRVLNQLKKGGRIL 235
+ R R +E + E LP P+D++ Y + + R L GGR L
Sbjct: 165 ----NGVRPRFLEG-SLEAALPFGPFDLLVANLYAELHAALAPRYREALVPGGRAL 215
>pdb|3OU2|A Chain A, Dhpi-Sah Complex Structure
pdb|3OU6|A Chain A, Dhpi-Sam Complex
pdb|3OU6|B Chain B, Dhpi-Sam Complex
pdb|3OU6|C Chain C, Dhpi-Sam Complex
pdb|3OU6|D Chain D, Dhpi-Sam Complex
pdb|3OU7|A Chain A, Dhpi-Sam-Hep Complex
pdb|3OU7|B Chain B, Dhpi-Sam-Hep Complex
pdb|3OU7|C Chain C, Dhpi-Sam-Hep Complex
pdb|3OU7|D Chain D, Dhpi-Sam-Hep Complex
Length = 218
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 67/159 (42%), Gaps = 28/159 (17%)
Query: 123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLR----NI 178
A E L+ + G VL+L SG+GY T H+ G +V ++ E+I + R N+
Sbjct: 37 ALERLRAGNIRG-DVLELASGTGYWT---RHLSGLADRVTALDGSAEMIAEAGRHGLDNV 92
Query: 179 SKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPI 238
+DL D + P+ +D +++ ++ VP + R
Sbjct: 93 EFRQQDLFD--------------WTPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAP 138
Query: 239 GPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQ 277
G + +F +T H+ L++ D E + +R+ LQ
Sbjct: 139 GGVVEFVDVTD----HERRLEQQDDSEP--EVAVRRTLQ 171
>pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Methionine
Length = 255
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 364 LDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHI 423
L + Y + G ++E G GSG L +A++VGP G V E D A + NI
Sbjct: 84 LIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF 143
Query: 424 D 424
D
Sbjct: 144 D 144
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 438 LDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHI 497
L + Y + G ++E G GSG L +A++VGP G V E D A + NI
Sbjct: 84 LIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF 143
Query: 498 D 498
D
Sbjct: 144 D 144
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 52/131 (39%), Gaps = 10/131 (7%)
Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI 193
G +++ G GSG T A++VGP G+V+ E + + + NI D RV I
Sbjct: 94 GDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFD----DRVTI 149
Query: 194 VEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRF 253
D EG E VI V LK GG +A P + Q+ R
Sbjct: 150 KLKDIYEGIEEENVDHVILDLPQPERVVEHAAKALKPGGFFVA-YTPCSN-----QVMRL 203
Query: 254 HDNTLQKTDLF 264
H+ + D F
Sbjct: 204 HEKLREFKDYF 214
>pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
Length = 253
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 364 LDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHI 423
L + Y + G ++E G GSG L +A++VGP G V E D A + NI
Sbjct: 84 LIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF 143
Query: 424 D 424
D
Sbjct: 144 D 144
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 438 LDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHI 497
L + Y + G ++E G GSG L +A++VGP G V E D A + NI
Sbjct: 84 LIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF 143
Query: 498 D 498
D
Sbjct: 144 D 144
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 52/131 (39%), Gaps = 10/131 (7%)
Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI 193
G +++ G GSG T A++VGP G+V+ E + + + NI D RV I
Sbjct: 94 GDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFD----DRVTI 149
Query: 194 VEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRF 253
D EG E VI V LK GG +A P + Q+ R
Sbjct: 150 KLKDIYEGIEEENVDHVILDLPQPERVVEHAAKALKPGGFFVA-YTPCSN-----QVMRL 203
Query: 254 HDNTLQKTDLF 264
H+ + D F
Sbjct: 204 HEKLREFKDYF 214
>pdb|3E7P|A Chain A, Crystal Structure Of Of Putative Methyltransferase From
Bacteroides Vulgatus Atcc 8482
Length = 270
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 11/110 (10%)
Query: 130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG 189
+L + + + DLG G+G QT + A V GK+ G++ P IE +N K N
Sbjct: 44 NLTNKSLIADLGCGTGGQTMILAQHV--PGKITGIDFFPGFIERFNKNAEKLNL----QN 97
Query: 190 RVRIVEADAREGYLPEAPYDVIYYGGCVSEVP-----SRVLNQLKKGGRI 234
RV+ + + + D+I+ G + + N LK GG +
Sbjct: 98 RVKGIVGSMDDLSFEKDSLDLIWSEGAIYNIGFERGLKEWRNYLKPGGYL 147
>pdb|3T7R|A Chain A, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7R|B Chain B, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|A Chain A, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|B Chain B, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|C Chain C, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|D Chain D, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|A Chain A, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|B Chain B, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|C Chain C, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|D Chain D, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
Length = 268
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 11/110 (10%)
Query: 130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG 189
+L + + + DLG G+G QT + A V GK+ G++ P IE +N K N
Sbjct: 49 NLTNKSLIADLGCGTGGQTMILAQHV--PGKITGIDFFPGFIERFNKNAEKLNLQ----N 102
Query: 190 RVRIVEADAREGYLPEAPYDVIYYGGCVSEVP-----SRVLNQLKKGGRI 234
RV+ + + + D+I+ G + + N LK GG +
Sbjct: 103 RVKGIVGSMDDLSFEKDSLDLIWSEGAIYNIGFERGLKEWRNYLKPGGYL 152
>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine
Methyltransferase 1 (Prmt1) M48l Mutant
Length = 349
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 51/113 (45%), Gaps = 11/113 (9%)
Query: 130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG 189
HL VLD+GSG+G C+FA G KVIG+E I I K NK LD
Sbjct: 63 HLFKDKVVLDVGSGTGI-LCMFAAKAGAR-KVIGIE--CSSISDYAVKIVKANK--LDH- 115
Query: 190 RVRIVEADAREGYLPEAPYDVI---YYGGCVSEVPSRVLNQLKKGGRILAPIG 239
V I++ E LP D+I + G C+ S + L + LAP G
Sbjct: 116 VVTIIKGKVEEVELPVEKVDIIISEWMGYCLF-YESMLNTVLHARDKWLAPDG 167
>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 343
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 51/113 (45%), Gaps = 11/113 (9%)
Query: 130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG 189
HL VLD+GSG+G C+FA G KVIG+E I I K NK LD
Sbjct: 57 HLFKDKVVLDVGSGTGI-LCMFAAKAGAR-KVIGIE--CSSISDYAVKIVKANK--LDHV 110
Query: 190 RVRIVEADAREGYLPEAPYDVI---YYGGCVSEVPSRVLNQLKKGGRILAPIG 239
V I++ E LP D+I + G C+ S + L + LAP G
Sbjct: 111 -VTIIKGKVEEVELPVEKVDIIISEWMGYCLF-YESMLNTVLHARDKWLAPDG 161
>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 353
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 51/113 (45%), Gaps = 11/113 (9%)
Query: 130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG 189
HL VLD+GSG+G C+FA G KVIG+E I I K NK LD
Sbjct: 67 HLFKDKVVLDVGSGTGI-LCMFAAKAGAR-KVIGIE--CSSISDYAVKIVKANK--LDHV 120
Query: 190 RVRIVEADAREGYLPEAPYDVI---YYGGCVSEVPSRVLNQLKKGGRILAPIG 239
V I++ E LP D+I + G C+ S + L + LAP G
Sbjct: 121 -VTIIKGKVEEVELPVEKVDIIISEWMGYCLF-YQSMLNTVLHARDKWLAPDG 171
>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 340
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 51/113 (45%), Gaps = 11/113 (9%)
Query: 130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG 189
HL VLD+GSG+G C+FA G KVIG+E I I K NK LD
Sbjct: 54 HLFKDKVVLDVGSGTGI-LCMFAAKAGAR-KVIGIE--CSSISDYAVKIVKANK--LDHV 107
Query: 190 RVRIVEADAREGYLPEAPYDVI---YYGGCVSEVPSRVLNQLKKGGRILAPIG 239
V I++ E LP D+I + G C+ S + L + LAP G
Sbjct: 108 -VTIIKGKVEEVELPVEKVDIIISEWMGYCLF-YESMLNTVLHARDKWLAPDG 158
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 25/164 (15%)
Query: 136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIE-ASLRNISKGNKDLLDSGRVRIV 194
+VLD+G+G+G+ F+ V + IGV+ E +E AS KG ++ VR
Sbjct: 24 RVLDIGAGAGHTALAFSPYV---QECIGVDATKEXVEVASSFAQEKGVEN------VRFQ 74
Query: 195 EADAREGYLPEAPYDVI------YYGGCVSEVPSRVLNQLKKGGRIL-----APIGP-MD 242
+ A P+ +D+I ++ V + V LK+ GR L AP P +D
Sbjct: 75 QGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLD 134
Query: 243 DFQKLTQIDRFHDNT-LQKTDLFEVAYDAIMRKALQMDIHKFQM 285
+F + ++R D + ++++ L E + DI K+ +
Sbjct: 135 EF--VNHLNRLRDPSHVRESSLSEWQAXFSANQLAYQDIQKWNL 176
>pdb|2YVL|A Chain A, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|B Chain B, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|C Chain C, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|D Chain D, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
Length = 248
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLL 186
LKL+L +VL+ G+GSG V + + G+V E + E + + +N+ K N
Sbjct: 85 LKLNLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFN---- 137
Query: 187 DSGRVRIVEADAREGYLPEAPYDVIYYGGCVS-EVPSRVLNQLKKGGRILAPIG 239
V+ D ++ +PE I++ V P L ++ K AP+G
Sbjct: 138 LGKNVKFFNVDFKDAEVPEG----IFHAAFVDVREPWHYLEKVHKSLMEGAPVG 187
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESI------ANISTNH 422
LNL++ +VLE G+GSG L +++ + G +E A +++ N+ +
Sbjct: 87 LNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFN 146
Query: 423 IDLIANETIEIIPH 436
+D E E I H
Sbjct: 147 VDFKDAEVPEGIFH 160
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS 493
LNL++ +VLE G+GSG L +++ + G +E A +++ +
Sbjct: 87 LNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFN 137
>pdb|4DF3|A Chain A, Crystal Structure Of Aeropyrum Pernix Fibrillarin In
Complex With Natively Bound S-adenosyl-l-methionine At
1.7a
pdb|4DF3|B Chain B, Crystal Structure Of Aeropyrum Pernix Fibrillarin In
Complex With Natively Bound S-adenosyl-l-methionine At
1.7a
Length = 233
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 352 NGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE 405
N S+ + A + L L + G ++L +G SG A+ M+ ++GP G + G+E
Sbjct: 56 NAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVE 109
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIE 172
++L + +G ++L LG SG + ++GP G++ GVE P ++
Sbjct: 71 IELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMR 116
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE 479
L L + G ++L +G SG A+ M+ ++GP G + G+E
Sbjct: 70 LIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVE 109
>pdb|3EEY|A Chain A, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|B Chain B, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|C Chain C, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|D Chain D, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|E Chain E, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|F Chain F, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|G Chain G, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|H Chain H, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|I Chain I, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|J Chain J, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
Length = 197
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 57/141 (40%), Gaps = 20/141 (14%)
Query: 114 MNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEA 173
+ N + + + +K+ + +G V+D G+G T A +VG G+V G ++ +
Sbjct: 3 LTIKNSLGQSHDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGF----DIQDK 58
Query: 174 SLRNISKGNKDLLDSGRVRIVEADARE----------------GYLPEAPYDVIYYGGCV 217
++ N +K DL RV +++ + GYLP + +
Sbjct: 59 AIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETT 118
Query: 218 SEVPSRVLNQLKKGGRILAPI 238
+ S+ + L GG I I
Sbjct: 119 IQALSKAMELLVTGGIITVVI 139
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 439 DLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHID 498
D + + G V++ G+G +A LVG G V G DI ++IAN + D
Sbjct: 14 DYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGF----DIQDKAIANTTKKLTD 69
Query: 499 LIANETIEIIRE 510
L + + +I++
Sbjct: 70 LNLIDRVTLIKD 81
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 357 ERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA 416
+ S+ D + + G V++ G+G +A LVG G V G DI ++IA
Sbjct: 6 KNSLGQSHDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGF----DIQDKAIA 61
Query: 417 NISTNHIDL 425
N + DL
Sbjct: 62 NTTKKLTDL 70
>pdb|2IPX|A Chain A, Human Fibrillarin
Length = 233
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVE 165
++H+ GAKVL LG+ SG + +VGP G V VE
Sbjct: 72 QIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVE 109
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE--HMMDIAIESIANISTNHIDLI 426
+++ GAKVL +G+ SG + ++ +VGP G V +E H + ++A TN I +I
Sbjct: 73 IHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVI 132
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE--HMMDIAIESIANISTNHIDLI 500
+++ GAKVL +G+ SG + ++ +VGP G V +E H + ++A TN I +I
Sbjct: 73 IHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVI 132
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 13/111 (11%)
Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISK-GNKDLLDSGRVR 192
GAKVL+ G G G QT + A P ++ ++ PE +E + N K G K+ V+
Sbjct: 38 GAKVLEAGCGIGAQTVILAKN-NPDAEITSIDISPESLEKARENTEKNGIKN------VK 90
Query: 193 IVEADAREGYLPEAPYDVIYYGGCVS--EVPSRVLNQLKKGGRILAPIGPM 241
++A+ ++ +D I+ + + P L LKK +L P G +
Sbjct: 91 FLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKK---VLKPGGTI 138
>pdb|1NKV|A Chain A, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
pdb|1NKV|B Chain B, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
pdb|1NKV|C Chain C, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
Length = 256
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 44/105 (41%), Gaps = 13/105 (12%)
Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI 193
G ++LDLGSGSG C +A G TG I L A + + ++L S RV
Sbjct: 37 GTRILDLGSGSGEXLCTWARDHGITGTGI---DXSSLFTAQAK---RRAEELGVSERVHF 90
Query: 194 VEADAREGYLPEAPYDV------IYYGGCVSEVPSRVLNQLKKGG 232
+ DA GY+ DV + G + + LK GG
Sbjct: 91 IHNDA-AGYVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGG 134
>pdb|2PWY|A Chain A, Crystal Structure Of A M1a58 Trna Methyltransferase
pdb|2PWY|B Chain B, Crystal Structure Of A M1a58 Trna Methyltransferase
Length = 258
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%)
Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNI 178
L L G +VL+ G+GSG T A VG G V E P + + RN+
Sbjct: 92 LDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNV 141
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 348 SAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE 405
SA P ++ +LDL G +VLE G+GSG L +A VG G V E
Sbjct: 76 SATPTYPKDASAMVTLLDLA-----PGMRVLEAGTGSGGLTLFLARAVGEKGLVESYE 128
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE 479
+ L+L G +VLE G+GSG L +A VG G V E
Sbjct: 89 VTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYE 128
>pdb|2B25|A Chain A, Human Putative Trna(1-Methyladenosine)methyltransferase
pdb|2B25|B Chain B, Human Putative Trna(1-Methyladenosine)methyltransferase
Length = 336
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 366 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMD 409
L ++++ G VLE GSGSG ++ ++ VG G V E D
Sbjct: 98 LSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKD 141
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMD 483
L ++++ G VLE GSGSG ++ ++ VG G V E D
Sbjct: 98 LSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKD 141
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 126 NLKLHLVD---GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGN 182
N+ L ++D G VL+ GSGSG + + VG G+VI E + +++K N
Sbjct: 95 NMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFE-----VRKDHHDLAKKN 149
Query: 183 -KDLLDSGRVRIVE 195
K DS ++ VE
Sbjct: 150 YKHWRDSWKLSHVE 163
>pdb|1YUB|A Chain A, Solution Structure Of An Rrna Methyltransferase (Ermam)
That Confers Macrolide-Lincosamide-Streptogramin
Antibiotic Resistance, Nmr, Minimized Average Structure
Length = 245
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 351 DNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HM 407
N +SE+ + I+ LNL V EIG+G G+L T +A + + VT +E H+
Sbjct: 9 QNFLTSEKVLNQIIK--QLNLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHL 63
Query: 408 MDIAIESI 415
+++ E +
Sbjct: 64 FNLSSEKL 71
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESI 489
LNL V EIG+G G+L T +A + + VT +E H+ +++ E +
Sbjct: 25 LNLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKL 71
>pdb|3UJ7|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ7|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ8|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sinefungin And Po4
pdb|3UJ9|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphocholine
pdb|3UJA|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphoethanolamine
pdb|3UJB|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|3UJB|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|4FGZ|A Chain A, Crystal Structure Of Phosphoethanolamine Methyltransferase
From Plasmodium Falciparum In Complex With Amodiaquine
pdb|4FGZ|B Chain B, Crystal Structure Of Phosphoethanolamine Methyltransferase
From Plasmodium Falciparum In Complex With Amodiaquine
Length = 266
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
+ L + +KVLD+GSG G G G++ ++ + +S NK + ++
Sbjct: 51 IELNENSKVLDIGSGLGGGCMYINEKYG--AHTHGIDICSNIVNMANERVSGNNKIIFEA 108
Query: 189 GRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQL-KKGGRILAPIGPM 241
+ E PE +D+IY + + N+L +K + L P G +
Sbjct: 109 NDILTKE-------FPENNFDLIYSRDAILHLSLENKNKLFQKCYKWLKPTGTL 155
>pdb|3UJD|A Chain A, Phosphoethanolamine Methyltransferase Mutant (Y19f) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
+ L + +KVLD+GSG G G G++ ++ + +S NK + ++
Sbjct: 51 IELNENSKVLDIGSGLGGGCMYINEKYG--AHTHGIDICSNIVNMANERVSGNNKIIFEA 108
Query: 189 GRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQL-KKGGRILAPIGPM 241
+ E PE +D+IY + + N+L +K + L P G +
Sbjct: 109 NDILTKE-------FPENNFDLIYSRDAILHLSLENKNKLFQKCYKWLKPTGTL 155
>pdb|3KKZ|A Chain A, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250.
pdb|3KKZ|B Chain B, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250
Length = 267
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 11/110 (10%)
Query: 130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG 189
+L + + + D+G G+G QT V A V TG+V G++ + I+ RN +
Sbjct: 43 NLTEKSLIADIGCGTGGQTXVLAGHV--TGQVTGLDFLSGFIDIFNRNARQSGL----QN 96
Query: 190 RVRIVEADAREGYLPEAPYDVIYYGGCVSEVP-SRVLNQ----LKKGGRI 234
RV + + D+I+ G + + R LN+ LKKGG +
Sbjct: 97 RVTGIVGSXDDLPFRNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYL 146
>pdb|3UJ6|A Chain A, Semet Phosphoethanolamine Methyltransferase From
Plasmodium Falciparum In Complex With Sam And Po4
Length = 266
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
+ L + +KVLD+GSG G G G++ ++ + +S NK + ++
Sbjct: 51 IELNENSKVLDIGSGLGGGCXYINEKYGA--HTHGIDICSNIVNXANERVSGNNKIIFEA 108
Query: 189 GRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQL-KKGGRILAPIGPM 241
+ E PE +D+IY + + N+L +K + L P G +
Sbjct: 109 NDILTKE-------FPENNFDLIYSRDAILHLSLENKNKLFQKCYKWLKPTGTL 155
>pdb|3UJC|A Chain A, Phosphoethanolamine Methyltransferase Mutant (H132a) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
+ L + +KVLD+GSG G G G++ ++ + +S NK + ++
Sbjct: 51 IELNENSKVLDIGSGLGGGCMYINEKYG--AHTHGIDICSNIVNMANERVSGNNKIIFEA 108
Query: 189 GRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQL-KKGGRILAPIGPM 241
+ E PE +D+IY + + N+L +K + L P G +
Sbjct: 109 NDILTKE-------FPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTL 155
>pdb|2ZUL|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533) In Complex With
Cofactor S-Adenosyl-L-Methionine
pdb|2ZWV|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533)
Length = 375
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 125 ENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKD 184
E L V G +VLDLG+G G T A M +V+GVE +L AS+ ++ KG +
Sbjct: 225 ERLGPEGVRGRQVLDLGAGYGALTLPLARM---GAEVVGVED--DL--ASVLSLQKGLEA 277
Query: 185 LLDSGRVRIVEADAREGYLPEAPYDVI 211
++ + + + +D E EA +D+I
Sbjct: 278 --NALKAQALHSDVDEALTEEARFDII 302
>pdb|3DMF|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet
pdb|3DMG|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adohcy
pdb|3DMH|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet And Guanosine
Length = 381
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 125 ENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKD 184
E L V G +VLDLG+G G T A M +V+GVE +L AS+ ++ KG +
Sbjct: 225 ERLGPEGVRGRQVLDLGAGYGALTLPLARM---GAEVVGVED--DL--ASVLSLQKGLEA 277
Query: 185 LLDSGRVRIVEADAREGYLPEAPYDVI 211
++ + + + +D E EA +D+I
Sbjct: 278 --NALKAQALHSDVDEALTEEARFDII 302
>pdb|3OA8|A Chain A, Diheme Soxax
pdb|3OA8|C Chain C, Diheme Soxax
pdb|3OA8|E Chain E, Diheme Soxax
Length = 275
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 87 FYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDL 140
F VDRG EP + SL + P ++ A +L + D KV+DL
Sbjct: 50 FLNVDRGEVLWSEPRGTRNVSLETCDLGEGPGKLEGAYAHLPRYFADTGKVMDL 103
>pdb|3BWY|A Chain A, Crystal Structure Of Human 108m Catechol O-
Methyltransferase Bound With S-Adenosylmethionine And
Inhibitor Dinitrocatechol
Length = 214
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIA--IESIANIS--TNHIDLIA 427
H+ + +LE+G+ GY A MA L+ P + +E D A + + + + + + L+
Sbjct: 56 HQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGMKDKVTLVV 115
Query: 428 NETIEIIPHI--------LDLCYLN 444
+ +IIP + LD+ +L+
Sbjct: 116 GASQDIIPQLKKKYDVDTLDMVFLD 140
>pdb|3OCD|A Chain A, Diheme Soxax - C236m Mutant
pdb|3OCD|C Chain C, Diheme Soxax - C236m Mutant
Length = 275
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 87 FYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDL 140
F VDRG EP + SL + P ++ A +L + D KV+DL
Sbjct: 50 FLNVDRGEVLWSEPRGTRNVSLETCDLGEGPGKLEGAYAHLPRYFADTGKVMDL 103
>pdb|3BWM|A Chain A, Crystal Structure Of Human Catechol O-Methyltransferase
With Bound Sam And Dnc
Length = 214
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIA--IESIANIS--TNHIDLIA 427
H+ + +LE+G+ GY A MA L+ P + +E D A + + + + + + L+
Sbjct: 56 HQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVV 115
Query: 428 NETIEIIPHI--------LDLCYLN 444
+ +IIP + LD+ +L+
Sbjct: 116 GASQDIIPQLKKKYDVDTLDMVFLD 140
>pdb|1KXZ|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1L3B|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3C|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3I|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1F38|A Chain A, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|B Chain B, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|C Chain C, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|D Chain D, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
Length = 192
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 138 LDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD 197
+D+G G+G T + G +V ++ PE I + N+ + L D+ V + E D
Sbjct: 38 VDVGCGTGGVT---LELAGRVRRVYAIDRNPEAISTTEXNLQR--HGLGDN--VTLXEGD 90
Query: 198 AREGYLPEAPYDVIYYGGC---VSEVPSRVLNQLKKGGRIL 235
A E D+ GG + E+ + ++LK GGRI+
Sbjct: 91 APEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRII 131
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 163 GVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPS 222
GV+ I E IE + +N + G + +L V ++ +LP I + G +E PS
Sbjct: 87 GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPS 146
Query: 223 RVLNQ-LKKGGRI--LAPIGPMDDFQKLTQ 249
LN L R+ L + D Q LTQ
Sbjct: 147 FELNSALLSRARVYLLKSLSTEDIEQVLTQ 176
>pdb|3A7E|A Chain A, Crystal Structure Of Human Comt Complexed With Sam And
3,5- Dinitrocatechol
Length = 216
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIA--IESIANIS--TNHIDLIA 427
H+ + +LE+G+ GY A MA L+ P + +E D A + + + + + + L+
Sbjct: 59 HQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVV 118
Query: 428 NETIEIIPHI--------LDLCYLN 444
+ +IIP + LD+ +L+
Sbjct: 119 GASQDIIPQLKKKYDVDTLDMVFLD 143
>pdb|3E23|A Chain A, Crystal Structure Of The Rpa2492 Protein In Complex With
Sam From Rhodopseudomonas Palustris, Northeast
Structural Genomics Consortium Target Rpr299
Length = 211
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 16/111 (14%)
Query: 130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG 189
L GAK+L+LG G+GYQ + V + PEL + R + + + L
Sbjct: 40 ELPAGAKILELGCGAGYQAEA---XLAAGFDVDATDGSPELAAEASRRLGRPVRTXL--- 93
Query: 190 RVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVL-NQLKKGGRILAPIG 239
+ DA + YD ++ C+ VP L + LK R L P G
Sbjct: 94 ---FHQLDAIDA------YDAVWAHACLLHVPRDELADVLKLIWRALKPGG 135
>pdb|4E4W|A Chain A, Structure Of The C-terminal Domain Of The Saccharomyces
Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer
Length = 285
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 103 DVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKV 137
D+ A+L Y GV++ ++A +LKL L+D V
Sbjct: 47 DIFANLNYVGVVDEERRLAAIQHDLKLFLIDYGSV 81
>pdb|4FMN|A Chain A, Structure Of The C-terminal Domain Of The Saccharomyces
Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Bound To A
Fragment Of Ntg2
pdb|4FMO|A Chain A, Structure Of The C-terminal Domain Of The Saccharomyces
Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Bound To A
Fragment Of Exo1
Length = 288
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 103 DVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKV 137
D+ A+L Y GV++ ++A +LKL L+D V
Sbjct: 50 DIFANLNYVGVVDEERRLAAIQHDLKLFLIDYGSV 84
>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
pdb|3C3Y|B Chain B, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
Length = 237
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 20/117 (17%)
Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
L LV+ K +++G +GY + A + GK+ ++ E E L I K +
Sbjct: 66 LKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVE---- 121
Query: 189 GRVRIVEADAR-------EGYLPEAPYDVIYYGGCVSEVPS------RVLNQLKKGG 232
++ +E+DA +G E YD +G ++ P+ R++ +K GG
Sbjct: 122 HKINFIESDAMLALDNLLQGQESEGSYD---FGFVDADKPNYIKYHERLMKLVKVGG 175
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 840
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 82 RVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLG 141
RVA YK EEP ++ AS N +QI +A N L AK +
Sbjct: 195 RVAANLYK------QKEEPVPNLRAS-------NLEDQIIEA--NPVLEAFGNAKTVRNN 239
Query: 142 SGSGYQTCVFAHMVGPTGKVIGVEHIPELIEAS 174
+ S + + H GPTGK+ G + L+E S
Sbjct: 240 NSSRFGKFIRIHF-GPTGKIAGADIETYLLEKS 271
>pdb|1UUQ|A Chain A, Exo-mannosidase From Cellvibrio Mixtus
pdb|1UZ4|A Chain A, Common Inhibition Of Beta-Glucosidase And Beta-Mannosidase
By Isofagomine Lactam Reflects Different Conformational
Intineraries For Glucoside And Mannoside Hydrolysis
Length = 440
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 76 GKIRTERVAQAFYKVDRGNFANE-EPYQDVSASLGYAGVMNAPNQIAD------AAENLK 128
+ T + F +V+ G+F + +PY ++ YA + APN++ D +NLK
Sbjct: 13 ANVATSPAHEHFVRVNGGHFELQGKPYVITGVNMWYAAYLGAPNEVGDRDRLAKELDNLK 72
Query: 129 LHLVDGAKVLDLGSGSGYQTCV 150
V+ +VL + S + V
Sbjct: 73 AIGVNNLRVLAVSEKSEINSAV 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,533,458
Number of Sequences: 62578
Number of extensions: 755744
Number of successful extensions: 1947
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1814
Number of HSP's gapped (non-prelim): 168
length of query: 511
length of database: 14,973,337
effective HSP length: 103
effective length of query: 408
effective length of database: 8,527,803
effective search space: 3479343624
effective search space used: 3479343624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)