Query psy7829
Match_columns 511
No_of_seqs 753 out of 5742
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 19:56:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7829.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7829hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2518 Pcm Protein-L-isoaspar 100.0 2E-31 4.4E-36 234.7 22.4 196 66-273 4-203 (209)
2 PF01135 PCMT: Protein-L-isoas 100.0 1.3E-31 2.8E-36 242.4 20.5 203 64-274 1-207 (209)
3 KOG1661|consensus 100.0 4.6E-30 1E-34 220.9 19.8 224 57-280 2-235 (237)
4 PRK13942 protein-L-isoaspartat 100.0 3.9E-27 8.5E-32 216.4 24.9 200 65-274 6-209 (212)
5 PRK13944 protein-L-isoaspartat 100.0 5.6E-27 1.2E-31 214.5 24.8 200 65-272 2-205 (205)
6 TIGR00080 pimt protein-L-isoas 100.0 8.7E-27 1.9E-31 215.4 24.9 207 62-278 4-214 (215)
7 PRK00312 pcm protein-L-isoaspa 99.9 2.6E-23 5.7E-28 192.1 24.1 199 63-274 7-209 (212)
8 PLN02336 phosphoethanolamine N 99.9 9.1E-22 2E-26 204.2 20.9 318 122-478 28-368 (475)
9 PRK01544 bifunctional N5-gluta 99.9 7.3E-21 1.6E-25 196.0 23.2 329 94-493 74-479 (506)
10 PRK13943 protein-L-isoaspartat 99.9 1.9E-20 4.2E-25 180.6 22.4 198 66-273 8-215 (322)
11 COG2226 UbiE Methylase involve 99.7 3.1E-16 6.8E-21 143.4 12.4 107 123-237 43-155 (238)
12 PF01209 Ubie_methyltran: ubiE 99.7 3.9E-16 8.4E-21 144.7 10.7 108 123-237 39-152 (233)
13 COG2242 CobL Precorrin-6B meth 99.6 5.9E-15 1.3E-19 127.6 16.0 131 352-494 14-153 (187)
14 PF12847 Methyltransf_18: Meth 99.6 1.9E-15 4E-20 124.8 11.9 100 133-237 1-110 (112)
15 COG2242 CobL Precorrin-6B meth 99.6 6.8E-15 1.5E-19 127.2 14.7 123 110-240 13-137 (187)
16 COG2518 Pcm Protein-L-isoaspar 99.6 1.4E-15 3E-20 134.6 9.8 143 290-478 18-168 (209)
17 TIGR03533 L3_gln_methyl protei 99.6 2.7E-14 5.9E-19 137.0 14.8 145 91-241 77-254 (284)
18 PLN02233 ubiquinone biosynthes 99.6 3.4E-14 7.4E-19 134.9 15.3 107 131-239 71-183 (261)
19 PRK00107 gidB 16S rRNA methylt 99.6 8.1E-14 1.8E-18 124.5 14.5 103 131-240 43-147 (187)
20 PRK14966 unknown domain/N5-glu 99.6 8.6E-14 1.9E-18 136.9 15.8 141 95-243 214-386 (423)
21 PF13847 Methyltransf_31: Meth 99.6 3.9E-14 8.4E-19 123.6 12.0 102 132-239 2-111 (152)
22 PRK11783 rlmL 23S rRNA m(2)G24 99.6 6.7E-13 1.5E-17 142.9 23.9 120 115-239 173-348 (702)
23 TIGR02469 CbiT precorrin-6Y C5 99.5 1.6E-13 3.4E-18 115.4 14.8 115 116-238 4-122 (124)
24 PRK11805 N5-glutamine S-adenos 99.5 8.4E-14 1.8E-18 134.8 14.5 141 95-241 93-266 (307)
25 PF05175 MTS: Methyltransferas 99.5 8E-14 1.7E-18 123.7 12.7 112 122-242 22-144 (170)
26 TIGR02752 MenG_heptapren 2-hep 99.5 1.4E-13 3.1E-18 129.0 15.0 111 121-238 35-151 (231)
27 COG2890 HemK Methylase of poly 99.5 1.3E-13 2.9E-18 131.4 14.6 141 95-244 72-244 (280)
28 PLN02244 tocopherol O-methyltr 99.5 1.3E-13 2.9E-18 136.0 14.9 102 132-239 117-224 (340)
29 COG2230 Cfa Cyclopropane fatty 99.5 6.8E-14 1.5E-18 130.3 11.0 136 120-272 61-204 (283)
30 PRK08287 cobalt-precorrin-6Y C 99.5 3.3E-13 7.2E-18 122.0 15.3 118 111-238 11-131 (187)
31 TIGR00536 hemK_fam HemK family 99.5 1.9E-13 4.1E-18 131.7 14.4 141 97-243 76-249 (284)
32 TIGR00138 gidB 16S rRNA methyl 99.5 1.8E-13 3.8E-18 122.3 12.0 101 133-241 42-145 (181)
33 TIGR00446 nop2p NOL1/NOP2/sun 99.5 1.4E-13 3.1E-18 130.9 12.0 169 57-239 2-200 (264)
34 PRK00377 cbiT cobalt-precorrin 99.5 2.9E-13 6.3E-18 123.4 13.3 120 113-238 22-145 (198)
35 PRK14103 trans-aconitate 2-met 99.5 1.4E-13 3.1E-18 130.8 11.3 103 121-239 19-127 (255)
36 COG4106 Tam Trans-aconitate me 99.5 7.1E-14 1.5E-18 121.8 8.2 98 131-240 28-131 (257)
37 PF02353 CMAS: Mycolic acid cy 99.5 1.6E-13 3.6E-18 130.1 11.2 108 119-237 50-165 (273)
38 PRK14903 16S rRNA methyltransf 99.5 1.4E-13 3.1E-18 139.6 11.5 180 47-240 157-368 (431)
39 COG2519 GCD14 tRNA(1-methylade 99.5 4.2E-13 9.1E-18 121.4 13.0 122 111-239 74-196 (256)
40 PF08241 Methyltransf_11: Meth 99.5 1.8E-13 3.8E-18 109.1 9.0 89 138-236 1-95 (95)
41 PRK15451 tRNA cmo(5)U34 methyl 99.5 4.7E-13 1E-17 126.4 13.3 108 124-237 47-163 (247)
42 PRK14901 16S rRNA methyltransf 99.5 4.3E-13 9.2E-18 136.9 13.3 178 47-238 172-384 (434)
43 PF08704 GCD14: tRNA methyltra 99.5 1.2E-12 2.7E-17 121.1 14.5 124 110-239 19-147 (247)
44 COG2227 UbiG 2-polyprenyl-3-me 99.5 7.6E-14 1.6E-18 125.2 6.2 98 133-239 59-162 (243)
45 PRK10901 16S rRNA methyltransf 99.5 5.2E-13 1.1E-17 136.0 13.0 176 47-239 165-373 (427)
46 TIGR03704 PrmC_rel_meth putati 99.4 1.8E-12 3.9E-17 122.1 14.7 139 94-242 45-220 (251)
47 PRK11873 arsM arsenite S-adeno 99.4 9.4E-13 2E-17 126.6 13.0 102 131-237 75-182 (272)
48 KOG2904|consensus 99.4 2.2E-12 4.8E-17 116.5 13.9 149 87-240 98-287 (328)
49 TIGR00563 rsmB ribosomal RNA s 99.4 9.1E-13 2E-17 134.3 13.0 179 47-239 159-369 (426)
50 PTZ00098 phosphoethanolamine N 99.4 1E-12 2.3E-17 124.9 12.4 108 121-239 42-157 (263)
51 PRK01683 trans-aconitate 2-met 99.4 1E-12 2.2E-17 125.4 12.4 105 121-239 21-131 (258)
52 PF01135 PCMT: Protein-L-isoas 99.4 5E-13 1.1E-17 121.3 9.7 114 354-478 55-171 (209)
53 PRK11207 tellurite resistance 99.4 1.6E-12 3.4E-17 118.3 12.7 104 123-237 22-133 (197)
54 PRK14902 16S rRNA methyltransf 99.4 9E-13 1.9E-17 135.2 12.4 177 47-238 172-379 (444)
55 PRK15001 SAM-dependent 23S rib 99.4 1.6E-12 3.4E-17 128.1 13.6 111 123-239 220-341 (378)
56 TIGR03534 RF_mod_PrmC protein- 99.4 3.3E-12 7.1E-17 121.5 14.8 134 100-240 54-219 (251)
57 PRK04266 fibrillarin; Provisio 99.4 3.3E-12 7.1E-17 117.8 14.2 115 117-239 55-177 (226)
58 KOG1540|consensus 99.4 2.1E-12 4.6E-17 115.6 12.2 111 123-237 92-213 (296)
59 PLN02396 hexaprenyldihydroxybe 99.4 7.2E-13 1.6E-17 128.4 10.0 101 132-239 130-236 (322)
60 PRK14904 16S rRNA methyltransf 99.4 4.2E-12 9E-17 130.1 16.1 175 48-239 175-378 (445)
61 PRK09328 N5-glutamine S-adenos 99.4 3.1E-12 6.7E-17 123.4 14.3 138 97-241 71-241 (275)
62 PRK11036 putative S-adenosyl-L 99.4 1.4E-12 3E-17 124.0 11.6 101 132-239 43-150 (255)
63 PRK07402 precorrin-6B methylas 99.4 4.1E-12 9E-17 115.7 14.2 121 111-239 20-143 (196)
64 TIGR00740 methyltransferase, p 99.4 3.8E-12 8.3E-17 119.9 14.2 101 131-237 51-160 (239)
65 COG4123 Predicted O-methyltran 99.4 1.5E-12 3.3E-17 119.1 10.5 107 131-242 42-174 (248)
66 PRK00121 trmB tRNA (guanine-N( 99.4 1.8E-12 4E-17 118.3 11.1 102 132-239 39-157 (202)
67 COG2519 GCD14 tRNA(1-methylade 99.4 1.1E-12 2.3E-17 118.8 8.9 128 355-494 78-213 (256)
68 TIGR00477 tehB tellurite resis 99.4 4.2E-12 9.1E-17 115.3 12.7 104 122-237 21-132 (195)
69 PF13659 Methyltransf_26: Meth 99.4 9.7E-13 2.1E-17 109.4 7.9 100 134-239 1-116 (117)
70 PRK10258 biotin biosynthesis p 99.4 2.4E-12 5.3E-17 122.2 11.6 110 119-243 30-145 (251)
71 COG2264 PrmA Ribosomal protein 99.4 2.3E-12 5E-17 121.1 11.1 112 119-237 148-262 (300)
72 COG2813 RsmC 16S RNA G1207 met 99.4 4.1E-12 8.8E-17 118.6 12.4 107 123-239 150-267 (300)
73 PLN02781 Probable caffeoyl-CoA 99.4 2.4E-12 5.2E-17 120.0 10.8 103 131-237 66-177 (234)
74 TIGR00091 tRNA (guanine-N(7)-) 99.4 3E-12 6.6E-17 116.2 10.9 102 133-240 16-134 (194)
75 PRK08317 hypothetical protein; 99.4 9.6E-12 2.1E-16 117.4 14.1 110 121-238 9-124 (241)
76 PLN02336 phosphoethanolamine N 99.4 6.7E-12 1.5E-16 130.5 14.2 107 123-239 258-370 (475)
77 PF13649 Methyltransf_25: Meth 99.4 9.2E-13 2E-17 106.3 5.8 90 137-232 1-101 (101)
78 PF08704 GCD14: tRNA methyltra 99.4 3.3E-12 7.1E-17 118.3 9.7 134 354-499 23-169 (247)
79 TIGR00406 prmA ribosomal prote 99.3 1.7E-11 3.7E-16 118.3 14.4 111 120-238 146-259 (288)
80 PRK15068 tRNA mo(5)U34 methylt 99.3 1.5E-11 3.3E-16 120.1 14.1 109 121-238 112-226 (322)
81 TIGR00537 hemK_rel_arch HemK-r 99.3 1.8E-11 4E-16 109.8 13.6 100 131-241 17-143 (179)
82 PRK11088 rrmA 23S rRNA methylt 99.3 1.4E-11 3.1E-16 118.2 13.6 99 132-241 84-184 (272)
83 TIGR02072 BioC biotin biosynth 99.3 1.3E-11 2.9E-16 116.4 13.0 111 119-239 19-136 (240)
84 COG4122 Predicted O-methyltran 99.3 1.2E-11 2.6E-16 111.6 11.9 115 117-237 45-165 (219)
85 TIGR00452 methyltransferase, p 99.3 1.5E-11 3.2E-16 118.7 13.3 101 131-238 119-225 (314)
86 smart00828 PKS_MT Methyltransf 99.3 7.7E-12 1.7E-16 116.7 11.1 98 135-238 1-104 (224)
87 PRK09489 rsmC 16S ribosomal RN 99.3 1.6E-11 3.5E-16 120.5 13.7 107 122-239 187-304 (342)
88 PRK11705 cyclopropane fatty ac 99.3 1.3E-11 2.7E-16 123.4 13.0 105 120-239 156-268 (383)
89 PF06325 PrmA: Ribosomal prote 99.3 7.5E-12 1.6E-16 119.2 10.5 109 119-237 147-258 (295)
90 smart00138 MeTrc Methyltransfe 99.3 1.1E-11 2.5E-16 117.6 11.8 106 132-237 98-241 (264)
91 PRK14967 putative methyltransf 99.3 3.9E-11 8.5E-16 111.6 14.7 100 131-239 34-160 (223)
92 KOG1270|consensus 99.3 3.6E-12 7.9E-17 115.0 7.4 97 134-239 90-196 (282)
93 PTZ00146 fibrillarin; Provisio 99.3 2.6E-11 5.6E-16 114.1 13.4 114 118-238 116-237 (293)
94 PLN02490 MPBQ/MSBQ methyltrans 99.3 1.7E-11 3.7E-16 119.1 12.2 97 132-237 112-214 (340)
95 PLN02476 O-methyltransferase 99.3 1.5E-11 3.3E-16 115.6 11.5 103 131-237 116-227 (278)
96 PF08242 Methyltransf_12: Meth 99.3 5.6E-13 1.2E-17 107.2 1.6 91 138-234 1-99 (99)
97 PLN02672 methionine S-methyltr 99.3 2.8E-11 6E-16 132.5 14.6 143 100-244 83-284 (1082)
98 PLN03075 nicotianamine synthas 99.3 3.5E-11 7.7E-16 113.7 13.4 102 132-238 122-233 (296)
99 TIGR01177 conserved hypothetic 99.3 4E-11 8.7E-16 118.2 14.2 118 114-241 165-297 (329)
100 PRK00517 prmA ribosomal protei 99.3 3.6E-11 7.8E-16 113.7 13.4 104 120-237 106-212 (250)
101 PF05401 NodS: Nodulation prot 99.3 1.3E-11 2.7E-16 107.9 9.2 96 132-238 42-146 (201)
102 PRK06922 hypothetical protein; 99.3 2.5E-11 5.5E-16 124.9 12.9 101 131-238 416-537 (677)
103 PRK14121 tRNA (guanine-N(7)-)- 99.3 4.6E-11 1E-15 117.1 13.6 104 131-240 120-237 (390)
104 PF08003 Methyltransf_9: Prote 99.3 2.9E-11 6.3E-16 112.7 11.5 161 119-294 103-271 (315)
105 PF03848 TehB: Tellurite resis 99.3 3.4E-11 7.4E-16 106.8 11.4 106 122-239 21-134 (192)
106 PF01596 Methyltransf_3: O-met 99.3 8.3E-12 1.8E-16 113.0 7.6 111 122-237 35-154 (205)
107 PRK00216 ubiE ubiquinone/menaq 99.3 6.6E-11 1.4E-15 111.6 14.2 111 121-237 41-157 (239)
108 PRK12335 tellurite resistance 99.3 3.7E-11 8.1E-16 116.1 12.6 95 133-237 120-222 (287)
109 PRK13942 protein-L-isoaspartat 99.3 4.3E-11 9.4E-16 110.1 12.4 112 354-478 59-175 (212)
110 PRK00377 cbiT cobalt-precorrin 99.3 1.4E-10 3E-15 105.8 14.8 140 351-500 19-168 (198)
111 PRK05785 hypothetical protein; 99.3 6.9E-11 1.5E-15 109.7 12.9 94 123-231 41-140 (226)
112 PRK08287 cobalt-precorrin-6Y C 99.3 1.5E-10 3.2E-15 104.7 14.6 138 353-500 12-155 (187)
113 TIGR02716 C20_methyl_CrtF C-20 99.2 7.6E-11 1.7E-15 115.3 13.5 108 120-237 138-253 (306)
114 PRK15001 SAM-dependent 23S rib 99.2 1.4E-10 3E-15 114.5 14.8 115 360-478 217-339 (378)
115 PRK13944 protein-L-isoaspartat 99.2 8.4E-11 1.8E-15 107.7 12.2 113 355-478 56-172 (205)
116 PRK07402 precorrin-6B methylas 99.2 3.2E-10 6.9E-15 103.3 15.3 141 354-502 22-168 (196)
117 TIGR03587 Pse_Me-ase pseudamin 99.2 1.4E-10 3.1E-15 105.7 12.9 79 130-220 40-118 (204)
118 PRK14968 putative methyltransf 99.2 2.1E-10 4.6E-15 103.9 14.0 108 123-239 15-149 (188)
119 PRK11188 rrmJ 23S rRNA methylt 99.2 9.8E-11 2.1E-15 107.2 11.5 96 131-242 49-169 (209)
120 PRK11933 yebU rRNA (cytosine-C 99.2 5.6E-11 1.2E-15 120.7 10.4 180 48-239 29-243 (470)
121 TIGR00080 pimt protein-L-isoas 99.2 1.3E-10 2.8E-15 107.4 12.1 111 355-478 61-176 (215)
122 PLN02589 caffeoyl-CoA O-methyl 99.2 8.6E-11 1.9E-15 109.3 10.8 102 131-236 77-188 (247)
123 PRK04457 spermidine synthase; 99.2 1.9E-10 4.1E-15 109.1 12.6 103 132-239 65-178 (262)
124 PRK10909 rsmD 16S rRNA m(2)G96 99.2 3.9E-10 8.4E-15 101.8 13.9 115 119-241 40-162 (199)
125 KOG1271|consensus 99.2 1.7E-10 3.6E-15 98.0 10.7 99 134-237 68-180 (227)
126 TIGR03840 TMPT_Se_Te thiopurin 99.2 2.4E-10 5.2E-15 104.7 12.7 104 132-238 33-152 (213)
127 TIGR01934 MenG_MenH_UbiE ubiqu 99.2 2.5E-10 5.5E-15 106.4 13.2 107 122-237 30-142 (223)
128 KOG1541|consensus 99.2 1.7E-10 3.6E-15 101.2 9.8 114 116-244 33-166 (270)
129 PF07021 MetW: Methionine bios 99.2 1.2E-10 2.6E-15 101.7 8.8 96 130-239 10-110 (193)
130 PF13489 Methyltransf_23: Meth 99.2 1.3E-10 2.9E-15 102.3 8.9 92 131-240 20-117 (161)
131 TIGR03438 probable methyltrans 99.1 5.4E-10 1.2E-14 108.6 13.7 115 125-243 55-182 (301)
132 TIGR02021 BchM-ChlM magnesium 99.1 4.6E-10 9.9E-15 104.3 12.2 108 119-236 41-156 (219)
133 PRK13168 rumA 23S rRNA m(5)U19 99.1 4.8E-10 1E-14 115.0 13.1 115 119-243 285-405 (443)
134 smart00650 rADc Ribosomal RNA 99.1 5.8E-10 1.3E-14 99.0 11.5 103 122-236 4-111 (169)
135 PRK03522 rumB 23S rRNA methylu 99.1 5.8E-10 1.3E-14 109.2 11.9 110 133-250 173-286 (315)
136 COG0144 Sun tRNA and rRNA cyto 99.1 7.6E-10 1.6E-14 109.4 12.6 177 48-238 78-288 (355)
137 COG2264 PrmA Ribosomal protein 99.1 3.3E-10 7.2E-15 106.7 9.3 132 353-494 142-281 (300)
138 TIGR00438 rrmJ cell division p 99.1 6.1E-10 1.3E-14 100.7 10.6 93 131-239 30-147 (188)
139 PRK00811 spermidine synthase; 99.1 9.3E-10 2E-14 105.7 11.5 107 132-239 75-192 (283)
140 PHA03412 putative methyltransf 99.1 1.3E-09 2.9E-14 99.0 11.6 75 133-218 49-125 (241)
141 PRK09489 rsmC 16S ribosomal RN 99.1 1.2E-08 2.5E-13 100.4 19.1 114 361-478 186-302 (342)
142 PRK06202 hypothetical protein; 99.1 1.2E-09 2.6E-14 102.4 11.7 90 132-229 59-159 (232)
143 PF12847 Methyltransf_18: Meth 99.1 1.7E-10 3.7E-15 94.9 4.7 57 373-430 1-61 (112)
144 PRK04266 fibrillarin; Provisio 99.0 1.6E-09 3.4E-14 100.1 11.5 131 358-498 56-207 (226)
145 PRK13255 thiopurine S-methyltr 99.0 1.9E-09 4.1E-14 99.1 11.9 103 131-236 35-153 (218)
146 COG2226 UbiE Methylase involve 99.0 4.8E-10 1E-14 102.9 7.8 104 369-478 47-155 (238)
147 KOG4300|consensus 99.0 3.9E-10 8.4E-15 97.9 6.7 95 136-237 79-181 (252)
148 COG2813 RsmC 16S RNA G1207 met 99.0 1.6E-09 3.5E-14 101.4 11.2 113 360-478 147-265 (300)
149 KOG2915|consensus 99.0 3.3E-09 7.1E-14 96.2 12.4 123 110-238 84-209 (314)
150 PRK01544 bifunctional N5-gluta 99.0 5.6E-09 1.2E-13 108.2 15.9 63 448-511 348-413 (506)
151 PRK15128 23S rRNA m(5)C1962 me 99.0 7.8E-10 1.7E-14 110.6 9.2 102 131-237 218-338 (396)
152 TIGR00138 gidB 16S rRNA methyl 99.0 2.4E-09 5.2E-14 95.7 11.4 112 373-494 42-162 (181)
153 PRK00107 gidB 16S rRNA methylt 99.0 1.7E-09 3.6E-14 96.8 9.6 98 371-478 43-144 (187)
154 KOG2915|consensus 99.0 2.8E-09 6E-14 96.7 10.7 134 358-503 92-237 (314)
155 PRK05134 bifunctional 3-demeth 99.0 3.2E-09 7E-14 99.7 11.7 100 131-239 46-152 (233)
156 PHA03411 putative methyltransf 99.0 3.8E-09 8.3E-14 98.4 11.9 77 131-219 62-138 (279)
157 PLN02233 ubiquinone biosynthes 99.0 2.1E-09 4.5E-14 102.2 10.3 105 369-478 69-181 (261)
158 PRK13943 protein-L-isoaspartat 99.0 4.7E-09 1E-13 101.8 12.8 113 355-478 64-179 (322)
159 TIGR02081 metW methionine bios 99.0 2.5E-09 5.4E-14 97.2 9.9 95 130-238 10-109 (194)
160 PLN02585 magnesium protoporphy 99.0 6.1E-09 1.3E-13 100.8 13.1 97 119-221 129-226 (315)
161 PRK07580 Mg-protoporphyrin IX 99.0 5.9E-09 1.3E-13 97.7 12.5 92 119-220 48-140 (230)
162 PRK01581 speE spermidine synth 99.0 4.3E-09 9.4E-14 101.8 11.7 105 132-237 149-267 (374)
163 COG2263 Predicted RNA methylas 99.0 7.2E-09 1.6E-13 89.6 11.6 90 117-217 28-118 (198)
164 PLN02366 spermidine synthase 99.0 6.1E-09 1.3E-13 100.5 12.4 103 132-236 90-204 (308)
165 PF01170 UPF0020: Putative RNA 99.0 7.2E-09 1.6E-13 92.4 11.9 112 113-231 10-144 (179)
166 PTZ00098 phosphoethanolamine N 99.0 2.4E-09 5.2E-14 101.9 9.3 144 321-478 8-155 (263)
167 COG4123 Predicted O-methyltran 99.0 4.9E-09 1.1E-13 96.2 10.9 134 368-502 39-197 (248)
168 PRK11783 rlmL 23S rRNA m(2)G24 99.0 2E-09 4.4E-14 116.1 9.8 103 132-239 537-657 (702)
169 PRK00312 pcm protein-L-isoaspa 99.0 8.3E-09 1.8E-13 95.3 12.5 108 355-478 62-174 (212)
170 TIGR01983 UbiG ubiquinone bios 99.0 8.5E-09 1.9E-13 96.2 12.5 113 119-239 29-150 (224)
171 cd02440 AdoMet_MTases S-adenos 98.9 7.3E-09 1.6E-13 83.3 10.5 95 136-237 1-103 (107)
172 PF06325 PrmA: Ribosomal prote 98.9 3.8E-10 8.3E-15 107.6 3.3 116 353-478 141-258 (295)
173 PF01209 Ubie_methyltran: ubiE 98.9 9.7E-10 2.1E-14 102.1 5.6 105 369-478 43-152 (233)
174 PF13847 Methyltransf_31: Meth 98.9 3.8E-09 8.2E-14 92.1 8.8 101 372-478 2-109 (152)
175 TIGR02085 meth_trns_rumB 23S r 98.9 7.4E-09 1.6E-13 103.6 11.8 119 117-243 215-339 (374)
176 COG2230 Cfa Cyclopropane fatty 98.9 5.1E-09 1.1E-13 97.9 9.9 115 368-484 67-210 (283)
177 TIGR02469 CbiT precorrin-6Y C5 98.9 7.5E-09 1.6E-13 86.7 10.1 109 358-477 6-120 (124)
178 TIGR00417 speE spermidine synt 98.9 6E-09 1.3E-13 99.7 10.6 103 133-237 72-185 (270)
179 TIGR00479 rumA 23S rRNA (uraci 98.9 5.1E-09 1.1E-13 107.4 10.7 102 131-241 290-399 (431)
180 PF02390 Methyltransf_4: Putat 98.9 5.7E-09 1.2E-13 94.2 9.6 100 134-239 18-134 (195)
181 PRK13256 thiopurine S-methyltr 98.9 1.8E-08 3.8E-13 92.3 12.7 118 115-238 28-163 (226)
182 PTZ00338 dimethyladenosine tra 98.9 1E-08 2.3E-13 98.4 11.5 105 114-229 19-123 (294)
183 PLN02476 O-methyltransferase 98.9 2.3E-09 5E-14 101.0 6.5 111 358-477 104-226 (278)
184 PTZ00146 fibrillarin; Provisio 98.9 1.7E-08 3.8E-13 95.1 12.2 138 356-500 114-270 (293)
185 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.9 3.9E-10 8.5E-15 108.0 0.8 176 49-238 6-219 (283)
186 PRK00121 trmB tRNA (guanine-N( 98.9 1.3E-08 2.8E-13 93.0 10.6 121 373-494 40-174 (202)
187 TIGR02752 MenG_heptapren 2-hep 98.9 1.1E-08 2.3E-13 96.0 10.3 110 362-478 36-150 (231)
188 PRK14103 trans-aconitate 2-met 98.9 7.3E-09 1.6E-13 98.5 9.1 107 360-478 18-125 (255)
189 KOG2361|consensus 98.9 3.1E-09 6.7E-14 95.0 6.0 145 136-287 74-234 (264)
190 PF01596 Methyltransf_3: O-met 98.9 1.2E-09 2.6E-14 99.0 3.4 111 358-477 31-153 (205)
191 PLN02781 Probable caffeoyl-CoA 98.9 6.4E-09 1.4E-13 97.0 8.1 110 359-477 55-176 (234)
192 PRK03612 spermidine synthase; 98.9 1.6E-08 3.4E-13 105.5 11.7 106 132-238 296-415 (521)
193 COG4122 Predicted O-methyltran 98.9 6.2E-09 1.3E-13 94.1 7.5 111 358-477 45-164 (219)
194 PRK00517 prmA ribosomal protei 98.9 1.8E-08 3.9E-13 95.3 11.0 123 356-494 102-231 (250)
195 KOG3191|consensus 98.8 3.5E-08 7.6E-13 84.2 11.3 102 133-241 43-171 (209)
196 TIGR00095 RNA methyltransferas 98.8 1.1E-07 2.4E-12 85.6 15.3 113 120-239 37-160 (189)
197 PRK05031 tRNA (uracil-5-)-meth 98.8 1.5E-08 3.2E-13 101.0 10.5 117 118-242 190-324 (362)
198 PF02353 CMAS: Mycolic acid cy 98.8 2.1E-08 4.6E-13 95.3 11.1 120 360-483 51-203 (273)
199 PRK00050 16S rRNA m(4)C1402 me 98.8 1.5E-08 3.3E-13 96.5 10.0 92 117-217 5-100 (296)
200 KOG3420|consensus 98.8 7.8E-09 1.7E-13 84.5 6.8 99 111-217 24-124 (185)
201 PRK01683 trans-aconitate 2-met 98.8 1.5E-08 3.3E-13 96.7 10.0 110 359-478 19-129 (258)
202 PRK14901 16S rRNA methyltransf 98.8 2.2E-08 4.8E-13 102.5 11.8 121 369-492 248-403 (434)
203 TIGR00755 ksgA dimethyladenosi 98.8 4.1E-08 8.9E-13 93.1 12.8 106 114-233 12-121 (253)
204 PF05175 MTS: Methyltransferas 98.8 5.5E-09 1.2E-13 92.7 6.4 101 372-478 30-139 (170)
205 KOG2899|consensus 98.8 1E-08 2.2E-13 91.5 7.8 107 130-237 55-208 (288)
206 PRK14896 ksgA 16S ribosomal RN 98.8 3.9E-08 8.5E-13 93.4 12.5 103 114-230 12-114 (258)
207 COG1041 Predicted DNA modifica 98.8 5.9E-08 1.3E-12 92.7 13.5 115 115-239 181-311 (347)
208 TIGR00446 nop2p NOL1/NOP2/sun 98.8 1.2E-08 2.6E-13 97.2 9.0 102 368-476 66-196 (264)
209 TIGR00406 prmA ribosomal prote 98.8 2.4E-08 5.1E-13 96.5 11.1 126 356-491 142-274 (288)
210 TIGR02143 trmA_only tRNA (urac 98.8 1.9E-08 4.2E-13 99.6 10.7 102 134-243 198-316 (353)
211 PRK11727 23S rRNA mA1618 methy 98.8 2.6E-08 5.6E-13 96.2 11.1 83 133-220 114-202 (321)
212 PRK00274 ksgA 16S ribosomal RN 98.8 3E-08 6.5E-13 94.9 11.5 102 115-229 26-127 (272)
213 COG1092 Predicted SAM-dependen 98.8 2.1E-08 4.5E-13 98.9 10.5 102 133-239 217-337 (393)
214 COG4976 Predicted methyltransf 98.8 2E-09 4.4E-14 95.0 3.0 114 116-244 110-231 (287)
215 KOG2940|consensus 98.8 9.8E-10 2.1E-14 96.8 1.0 175 121-306 60-243 (325)
216 COG0220 Predicted S-adenosylme 98.8 3.2E-08 6.9E-13 90.8 10.9 101 135-241 50-167 (227)
217 COG3963 Phospholipid N-methylt 98.8 7.3E-08 1.6E-12 81.1 11.9 115 115-241 32-159 (194)
218 PF05724 TPMT: Thiopurine S-me 98.8 2E-08 4.2E-13 92.2 9.3 116 115-236 22-153 (218)
219 KOG1663|consensus 98.8 4.6E-08 9.9E-13 87.3 11.1 116 116-237 58-182 (237)
220 PF02475 Met_10: Met-10+ like- 98.8 3.3E-08 7.2E-13 88.9 10.4 100 130-235 98-199 (200)
221 TIGR00091 tRNA (guanine-N(7)-) 98.8 2.5E-08 5.5E-13 90.5 9.5 116 372-493 15-149 (194)
222 PRK14904 16S rRNA methyltransf 98.8 2.2E-08 4.7E-13 102.9 9.9 102 369-478 246-376 (445)
223 PF06080 DUF938: Protein of un 98.8 3.1E-08 6.8E-13 88.1 9.3 109 123-237 14-140 (204)
224 PRK14903 16S rRNA methyltransf 98.8 3.3E-08 7.2E-13 100.6 10.5 104 369-478 233-365 (431)
225 PLN02244 tocopherol O-methyltr 98.8 3.5E-08 7.5E-13 97.6 10.3 111 359-478 101-222 (340)
226 PRK11873 arsM arsenite S-adeno 98.8 3.1E-08 6.6E-13 95.3 9.6 105 369-478 73-182 (272)
227 COG2521 Predicted archaeal met 98.8 9.7E-09 2.1E-13 91.0 5.3 107 131-242 132-249 (287)
228 COG2265 TrmA SAM-dependent met 98.8 3.5E-08 7.6E-13 99.4 10.0 116 118-243 280-401 (432)
229 TIGR00537 hemK_rel_arch HemK-r 98.7 6.2E-08 1.3E-12 86.9 10.5 123 369-494 15-158 (179)
230 KOG3010|consensus 98.7 1.9E-08 4.1E-13 90.1 6.7 98 132-236 31-134 (261)
231 PRK15451 tRNA cmo(5)U34 methyl 98.7 4.1E-08 8.9E-13 92.8 9.3 106 370-478 53-163 (247)
232 PRK14966 unknown domain/N5-glu 98.7 1.1E-07 2.5E-12 94.0 12.7 141 354-499 236-403 (423)
233 TIGR03704 PrmC_rel_meth putati 98.7 8E-08 1.7E-12 90.7 11.2 138 354-494 68-233 (251)
234 COG1352 CheR Methylase of chem 98.7 1.2E-07 2.5E-12 89.0 12.1 118 119-236 81-239 (268)
235 PRK14121 tRNA (guanine-N(7)-)- 98.7 4.5E-08 9.8E-13 96.3 9.6 118 369-492 118-251 (390)
236 PRK14902 16S rRNA methyltransf 98.7 6.6E-08 1.4E-12 99.4 11.2 99 369-476 246-376 (444)
237 PRK04338 N(2),N(2)-dimethylgua 98.7 1.1E-07 2.3E-12 94.9 11.8 111 119-237 44-157 (382)
238 PF00891 Methyltransf_2: O-met 98.7 9.7E-08 2.1E-12 90.0 10.9 91 131-237 98-198 (241)
239 COG4106 Tam Trans-aconitate me 98.7 9E-08 1.9E-12 84.2 9.6 105 362-476 21-126 (257)
240 TIGR00563 rsmB ribosomal RNA s 98.7 8.7E-08 1.9E-12 97.9 11.2 104 369-478 234-367 (426)
241 PLN02589 caffeoyl-CoA O-methyl 98.7 2.8E-08 6.1E-13 92.6 6.9 108 360-476 67-187 (247)
242 TIGR01177 conserved hypothetic 98.7 9.9E-08 2.1E-12 94.1 10.9 120 354-478 165-293 (329)
243 PRK13168 rumA 23S rRNA m(5)U19 98.7 7.4E-08 1.6E-12 98.9 10.1 71 358-433 284-357 (443)
244 COG2263 Predicted RNA methylas 98.7 1.4E-07 3E-12 81.7 10.0 132 353-493 24-160 (198)
245 PRK04457 spermidine synthase; 98.7 1.5E-07 3.3E-12 89.3 11.3 106 371-478 64-176 (262)
246 PRK11036 putative S-adenosyl-L 98.7 4.9E-08 1.1E-12 92.8 7.9 108 360-478 34-148 (255)
247 PF03291 Pox_MCEL: mRNA cappin 98.7 1.7E-07 3.8E-12 91.3 11.5 105 133-239 62-187 (331)
248 PRK08317 hypothetical protein; 98.7 1.4E-07 2.9E-12 88.9 10.6 111 360-477 8-122 (241)
249 KOG1661|consensus 98.7 8.5E-08 1.8E-12 83.9 8.2 114 356-478 65-192 (237)
250 COG2227 UbiG 2-polyprenyl-3-me 98.7 3E-08 6.5E-13 89.5 5.5 99 372-478 58-160 (243)
251 PF10672 Methyltrans_SAM: S-ad 98.7 5.1E-08 1.1E-12 92.5 7.2 103 132-239 122-239 (286)
252 PRK11188 rrmJ 23S rRNA methylt 98.6 1.3E-07 2.8E-12 86.6 9.4 100 371-478 49-164 (209)
253 PLN02823 spermine synthase 98.6 2.6E-07 5.5E-12 90.2 11.9 105 133-239 103-221 (336)
254 TIGR00740 methyltransferase, p 98.6 1.2E-07 2.7E-12 89.2 9.4 103 370-478 50-160 (239)
255 PF03602 Cons_hypoth95: Conser 98.6 5.6E-08 1.2E-12 86.7 6.7 118 118-241 27-156 (183)
256 PRK09328 N5-glutamine S-adenos 98.6 4.3E-07 9.3E-12 87.5 13.0 144 354-500 91-261 (275)
257 PRK10901 16S rRNA methyltransf 98.6 2.3E-07 4.9E-12 94.8 11.5 102 369-476 240-369 (427)
258 PLN02490 MPBQ/MSBQ methyltrans 98.6 1.9E-07 4.1E-12 91.1 10.3 115 356-478 97-214 (340)
259 TIGR03534 RF_mod_PrmC protein- 98.6 3.3E-07 7.1E-12 87.1 11.8 143 354-500 71-240 (251)
260 TIGR03533 L3_gln_methyl protei 98.6 2.4E-07 5.2E-12 89.1 10.9 138 354-494 103-267 (284)
261 KOG1499|consensus 98.6 1.2E-07 2.6E-12 90.2 8.5 98 131-235 58-164 (346)
262 COG0742 N6-adenine-specific me 98.6 3.4E-06 7.4E-11 74.0 16.9 117 119-241 29-157 (187)
263 PF10294 Methyltransf_16: Puta 98.6 2.6E-07 5.7E-12 82.0 10.2 105 131-239 43-157 (173)
264 PLN02396 hexaprenyldihydroxybe 98.6 6.9E-08 1.5E-12 93.8 6.7 99 372-478 130-234 (322)
265 PF08241 Methyltransf_11: Meth 98.6 5.5E-08 1.2E-12 77.0 5.1 92 378-476 1-94 (95)
266 PRK10258 biotin biosynthesis p 98.6 2E-07 4.2E-12 88.6 9.6 109 358-478 29-139 (251)
267 KOG1975|consensus 98.6 1.6E-07 3.5E-12 87.4 8.6 116 119-239 106-238 (389)
268 PRK11705 cyclopropane fatty ac 98.6 2.2E-07 4.7E-12 93.1 10.3 106 362-477 158-265 (383)
269 PF01739 CheR: CheR methyltran 98.6 2.7E-07 5.9E-12 83.0 9.7 105 133-237 31-174 (196)
270 PRK00274 ksgA 16S ribosomal RN 98.6 1.8E-07 3.8E-12 89.6 8.8 73 356-433 27-99 (272)
271 TIGR00536 hemK_fam HemK family 98.6 5E-07 1.1E-11 87.2 11.9 90 354-445 96-190 (284)
272 PRK14967 putative methyltransf 98.6 4.8E-07 1E-11 84.1 10.8 124 369-494 32-177 (223)
273 PRK11805 N5-glutamine S-adenos 98.6 5.4E-07 1.2E-11 87.5 11.4 122 354-478 115-262 (307)
274 KOG1122|consensus 98.6 3.2E-07 6.9E-12 88.7 9.4 174 51-238 164-371 (460)
275 PRK14896 ksgA 16S ribosomal RN 98.6 2.1E-07 4.4E-12 88.5 8.2 86 356-446 14-100 (258)
276 PRK11933 yebU rRNA (cytosine-C 98.5 4.1E-07 8.9E-12 92.7 10.8 101 370-476 110-239 (470)
277 COG2890 HemK Methylase of poly 98.5 1.3E-07 2.9E-12 90.3 6.8 92 351-446 91-185 (280)
278 COG2520 Predicted methyltransf 98.5 5.3E-07 1.1E-11 87.1 10.7 105 131-241 186-292 (341)
279 PF01269 Fibrillarin: Fibrilla 98.5 1.3E-06 2.9E-11 78.1 12.1 115 118-239 57-179 (229)
280 TIGR03840 TMPT_Se_Te thiopurin 98.5 7E-07 1.5E-11 81.9 10.8 99 370-478 31-151 (213)
281 PRK11207 tellurite resistance 98.5 5.2E-07 1.1E-11 82.1 9.9 104 369-478 26-133 (197)
282 PTZ00338 dimethyladenosine tra 98.5 2.2E-07 4.8E-12 89.3 7.7 84 356-444 21-108 (294)
283 PLN03075 nicotianamine synthas 98.5 2.4E-07 5.1E-12 87.9 7.7 102 370-476 120-230 (296)
284 PRK10611 chemotaxis methyltran 98.5 9.9E-07 2.2E-11 84.0 11.6 104 134-237 116-261 (287)
285 PRK04148 hypothetical protein; 98.5 2.8E-06 6.1E-11 70.6 12.8 90 132-236 15-107 (134)
286 TIGR00477 tehB tellurite resis 98.5 3.1E-07 6.6E-12 83.5 7.8 103 369-478 26-132 (195)
287 KOG0820|consensus 98.5 9.6E-07 2.1E-11 80.5 10.7 115 106-231 32-147 (315)
288 TIGR00479 rumA 23S rRNA (uraci 98.5 5.7E-07 1.2E-11 92.3 10.5 127 360-494 281-413 (431)
289 PF05958 tRNA_U5-meth_tr: tRNA 98.5 3E-07 6.5E-12 91.2 8.1 113 119-242 185-314 (352)
290 PF05219 DREV: DREV methyltran 98.5 5.8E-07 1.2E-11 82.4 9.1 90 133-239 94-189 (265)
291 PF13659 Methyltransf_26: Meth 98.5 1.5E-07 3.2E-12 78.0 4.9 103 374-478 1-114 (117)
292 TIGR00438 rrmJ cell division p 98.5 7.1E-07 1.5E-11 80.7 9.7 54 369-430 28-81 (188)
293 smart00650 rADc Ribosomal RNA 98.5 3.2E-07 7E-12 81.4 7.3 79 362-445 4-85 (169)
294 PLN02232 ubiquinone biosynthes 98.5 5.2E-07 1.1E-11 79.1 8.1 76 162-239 1-82 (160)
295 COG0030 KsgA Dimethyladenosine 98.5 1.5E-06 3.3E-11 80.6 11.3 105 115-231 14-119 (259)
296 PRK15068 tRNA mo(5)U34 methylt 98.5 6.3E-07 1.4E-11 87.7 9.1 102 369-477 118-224 (322)
297 PF09445 Methyltransf_15: RNA 98.5 1.6E-07 3.4E-12 81.0 4.2 75 136-217 2-79 (163)
298 PRK03522 rumB 23S rRNA methylu 98.4 4.6E-07 1E-11 88.8 7.9 59 372-433 172-233 (315)
299 PRK11088 rrmA 23S rRNA methylt 98.4 9.9E-07 2.2E-11 84.7 9.9 93 372-478 84-180 (272)
300 KOG1500|consensus 98.4 1E-06 2.2E-11 82.3 9.2 133 133-275 177-323 (517)
301 PRK00216 ubiE ubiquinone/menaq 98.4 1.7E-06 3.7E-11 81.4 10.9 111 361-478 41-157 (239)
302 PF02384 N6_Mtase: N-6 DNA Met 98.4 1.1E-06 2.4E-11 86.3 9.9 118 117-239 32-184 (311)
303 PF02527 GidB: rRNA small subu 98.4 2.7E-06 5.8E-11 75.7 11.3 112 122-240 34-150 (184)
304 PRK14968 putative methyltransf 98.4 1.5E-06 3.3E-11 78.5 9.9 123 369-494 19-166 (188)
305 KOG1270|consensus 98.4 2E-07 4.3E-12 84.7 3.8 96 374-478 90-194 (282)
306 COG0421 SpeE Spermidine syntha 98.4 2.3E-06 5E-11 81.2 11.2 101 135-237 78-189 (282)
307 PF05185 PRMT5: PRMT5 arginine 98.4 1.3E-06 2.9E-11 88.7 10.0 97 134-235 187-294 (448)
308 TIGR00006 S-adenosyl-methyltra 98.4 2E-06 4.3E-11 82.2 10.4 92 117-217 6-102 (305)
309 TIGR00452 methyltransferase, p 98.4 1.3E-06 2.8E-11 84.6 9.3 102 369-477 117-223 (314)
310 TIGR02072 BioC biotin biosynth 98.4 1.5E-06 3.3E-11 81.7 9.5 100 372-478 33-134 (240)
311 PRK06922 hypothetical protein; 98.4 9.4E-07 2E-11 91.7 8.5 108 369-478 414-536 (677)
312 TIGR00478 tly hemolysin TlyA f 98.4 1.4E-06 3.1E-11 80.2 8.7 98 132-239 74-172 (228)
313 TIGR02716 C20_methyl_CrtF C-20 98.4 1.4E-06 3E-11 85.3 9.1 108 360-478 138-253 (306)
314 TIGR00755 ksgA dimethyladenosi 98.4 1E-06 2.2E-11 83.6 7.9 73 356-433 14-87 (253)
315 PRK00536 speE spermidine synth 98.4 4.2E-06 9.2E-11 78.4 11.8 99 132-237 71-170 (262)
316 PRK15128 23S rRNA m(5)C1962 me 98.4 8.1E-07 1.7E-11 89.1 7.2 121 372-494 219-362 (396)
317 COG0116 Predicted N6-adenine-s 98.4 6.6E-06 1.4E-10 80.1 13.2 121 111-237 171-343 (381)
318 TIGR03587 Pse_Me-ase pseudamin 98.3 1.1E-06 2.4E-11 80.2 7.3 60 370-432 40-99 (204)
319 COG0030 KsgA Dimethyladenosine 98.3 1.5E-06 3.2E-11 80.7 8.1 72 357-433 16-88 (259)
320 PRK13255 thiopurine S-methyltr 98.3 3E-06 6.6E-11 78.0 9.9 98 369-476 33-152 (218)
321 PF02390 Methyltransf_4: Putat 98.3 9.8E-07 2.1E-11 79.7 6.5 112 374-491 18-148 (195)
322 smart00828 PKS_MT Methyltransf 98.3 1.3E-06 2.8E-11 81.4 7.5 98 375-478 1-103 (224)
323 TIGR02085 meth_trns_rumB 23S r 98.3 1.7E-06 3.6E-11 86.7 8.6 72 372-446 232-309 (374)
324 PF05891 Methyltransf_PK: AdoM 98.3 1.2E-06 2.7E-11 78.3 6.7 100 133-239 55-162 (218)
325 PRK10909 rsmD 16S rRNA m(2)G96 98.3 2.2E-06 4.8E-11 77.4 8.1 90 354-446 35-130 (199)
326 TIGR00308 TRM1 tRNA(guanine-26 98.3 2.7E-06 5.8E-11 84.4 9.1 100 134-238 45-147 (374)
327 PF05401 NodS: Nodulation prot 98.3 8.1E-07 1.8E-11 78.1 4.8 85 346-433 14-101 (201)
328 TIGR02143 trmA_only tRNA (urac 98.3 2.5E-06 5.4E-11 84.7 8.5 58 374-434 198-258 (353)
329 PF01564 Spermine_synth: Sperm 98.3 2.7E-06 5.8E-11 79.9 8.1 106 132-239 75-192 (246)
330 PHA03411 putative methyltransf 98.3 2.2E-06 4.9E-11 80.1 7.3 87 355-447 49-136 (279)
331 PRK00811 spermidine synthase; 98.3 2.7E-06 5.8E-11 81.9 8.0 103 370-478 73-190 (283)
332 COG0293 FtsJ 23S rRNA methylas 98.2 6.7E-06 1.5E-10 73.3 9.7 97 131-243 43-164 (205)
333 COG0144 Sun tRNA and rRNA cyto 98.2 7.3E-06 1.6E-10 81.3 10.9 105 368-476 151-285 (355)
334 COG2265 TrmA SAM-dependent met 98.2 3.9E-06 8.5E-11 84.7 8.9 108 357-469 279-409 (432)
335 PRK00050 16S rRNA m(4)C1402 me 98.2 3.1E-06 6.6E-11 80.9 7.7 72 359-432 7-79 (296)
336 TIGR01934 MenG_MenH_UbiE ubiqu 98.2 7.6E-06 1.6E-10 76.1 10.1 105 369-478 35-142 (223)
337 PRK01581 speE spermidine synth 98.2 1.6E-05 3.4E-10 77.4 12.4 109 369-478 146-267 (374)
338 PRK12335 tellurite resistance 98.2 4.7E-06 1E-10 80.6 8.9 100 373-478 120-222 (287)
339 COG0220 Predicted S-adenosylme 98.2 8.1E-06 1.8E-10 75.0 9.8 99 374-478 49-163 (227)
340 PHA03412 putative methyltransf 98.2 4.3E-06 9.3E-11 76.4 7.9 89 355-448 34-125 (241)
341 PRK05031 tRNA (uracil-5-)-meth 98.2 5E-06 1.1E-10 82.9 9.1 58 374-434 207-267 (362)
342 PF08242 Methyltransf_12: Meth 98.2 1.9E-07 4.1E-12 74.8 -1.1 92 378-475 1-99 (99)
343 KOG1541|consensus 98.2 6.2E-06 1.3E-10 72.9 8.3 128 355-494 32-180 (270)
344 KOG1540|consensus 98.2 7.6E-06 1.7E-10 74.1 9.0 104 369-478 96-213 (296)
345 PF05958 tRNA_U5-meth_tr: tRNA 98.2 3.9E-06 8.6E-11 83.2 8.0 67 358-430 184-253 (352)
346 KOG0820|consensus 98.2 5.8E-06 1.3E-10 75.5 8.0 86 357-447 44-133 (315)
347 PRK06202 hypothetical protein; 98.2 6.2E-06 1.4E-10 77.2 8.6 59 370-428 57-118 (232)
348 TIGR02021 BchM-ChlM magnesium 98.2 3.8E-06 8.3E-11 77.9 6.9 58 371-431 53-114 (219)
349 KOG2899|consensus 98.2 1.3E-05 2.9E-10 71.9 9.8 49 370-419 55-103 (288)
350 TIGR03438 probable methyltrans 98.2 7.2E-06 1.6E-10 79.8 9.0 102 371-476 61-174 (301)
351 PRK05785 hypothetical protein; 98.2 9.5E-06 2.1E-10 75.4 9.1 44 372-417 50-93 (226)
352 TIGR02987 met_A_Alw26 type II 98.1 2.5E-05 5.4E-10 82.3 13.1 103 111-218 4-123 (524)
353 COG0357 GidB Predicted S-adeno 98.1 8.8E-06 1.9E-10 73.6 8.1 99 134-239 68-169 (215)
354 PF12147 Methyltransf_20: Puta 98.1 5.6E-05 1.2E-09 70.4 13.2 100 133-237 135-248 (311)
355 PF05148 Methyltransf_8: Hypot 98.1 9E-06 2E-10 72.1 7.5 94 120-238 60-158 (219)
356 KOG2187|consensus 98.1 6.4E-06 1.4E-10 82.1 7.3 116 117-242 369-494 (534)
357 KOG3420|consensus 98.1 3.3E-06 7.2E-11 69.4 4.4 99 351-451 24-128 (185)
358 KOG2352|consensus 98.1 0.00019 4E-09 71.7 17.1 101 130-238 44-161 (482)
359 PLN02366 spermidine synthase 98.1 1.1E-05 2.3E-10 78.2 8.3 106 370-477 88-204 (308)
360 COG1889 NOP1 Fibrillarin-like 98.1 3.8E-05 8.3E-10 67.2 10.8 114 118-239 60-181 (231)
361 PRK11727 23S rRNA mA1618 methy 98.1 1.8E-05 4E-10 76.6 9.7 48 373-421 114-161 (321)
362 PF13649 Methyltransf_25: Meth 98.1 6.4E-06 1.4E-10 66.2 5.6 56 377-432 1-60 (101)
363 PF08123 DOT1: Histone methyla 98.1 2.1E-05 4.6E-10 71.3 9.4 114 117-236 28-156 (205)
364 COG2521 Predicted archaeal met 98.1 7.1E-06 1.5E-10 73.2 6.0 140 356-501 119-277 (287)
365 COG0275 Predicted S-adenosylme 98.1 6.7E-05 1.5E-09 70.2 12.4 92 117-216 9-105 (314)
366 PLN02585 magnesium protoporphy 98.0 7.6E-06 1.7E-10 79.4 6.5 60 357-419 127-187 (315)
367 KOG1596|consensus 98.0 2E-05 4.3E-10 70.5 8.3 115 119-240 141-263 (317)
368 TIGR03439 methyl_EasF probable 98.0 7.4E-05 1.6E-09 72.4 13.0 112 127-243 70-202 (319)
369 PRK03612 spermidine synthase; 98.0 4.3E-05 9.2E-10 80.0 11.8 123 370-494 294-437 (521)
370 KOG2904|consensus 98.0 2.1E-05 4.5E-10 72.0 8.1 65 354-419 128-193 (328)
371 PRK07580 Mg-protoporphyrin IX 98.0 1E-05 2.2E-10 75.8 6.4 56 371-429 61-120 (230)
372 KOG1663|consensus 98.0 1.4E-05 3.1E-10 71.6 6.8 106 362-476 63-180 (237)
373 smart00138 MeTrc Methyltransfe 98.0 1.3E-05 2.9E-10 76.2 7.1 48 371-418 97-152 (264)
374 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.0 1.6E-05 3.5E-10 76.4 7.4 95 362-461 74-172 (283)
375 TIGR00417 speE spermidine synt 98.0 4.5E-05 9.7E-10 73.0 10.4 106 371-478 70-185 (270)
376 PF00398 RrnaAD: Ribosomal RNA 98.0 4.5E-05 9.7E-10 72.7 10.4 94 113-218 12-108 (262)
377 PRK05134 bifunctional 3-demeth 98.0 2.1E-05 4.7E-10 73.7 8.1 113 356-478 33-150 (233)
378 PF07021 MetW: Methionine bios 98.0 1.4E-05 3E-10 70.3 5.7 59 370-434 10-68 (193)
379 PLN02672 methionine S-methyltr 97.9 8.9E-06 1.9E-10 90.1 5.5 72 374-446 119-212 (1082)
380 PF08003 Methyltransf_9: Prote 97.9 5.5E-05 1.2E-09 71.2 9.6 48 362-413 106-153 (315)
381 PF13489 Methyltransf_23: Meth 97.9 8.4E-06 1.8E-10 71.5 4.0 40 371-413 20-59 (161)
382 PF01728 FtsJ: FtsJ-like methy 97.9 1.7E-05 3.7E-10 71.1 6.0 92 133-240 23-141 (181)
383 PF01795 Methyltransf_5: MraW 97.9 3.2E-05 6.9E-10 73.9 8.0 92 117-217 6-103 (310)
384 KOG3010|consensus 97.9 3.7E-05 8E-10 69.3 7.5 100 370-478 29-135 (261)
385 TIGR00095 RNA methyltransferas 97.9 3E-05 6.5E-10 69.8 7.1 61 372-434 48-112 (189)
386 PRK13256 thiopurine S-methyltr 97.9 5.5E-05 1.2E-09 69.4 8.1 113 355-478 28-162 (226)
387 TIGR00478 tly hemolysin TlyA f 97.9 0.00014 3E-09 67.1 10.7 49 361-413 64-113 (228)
388 PF04816 DUF633: Family of unk 97.8 5.2E-05 1.1E-09 68.8 7.7 76 137-217 1-76 (205)
389 KOG3045|consensus 97.8 7.4E-05 1.6E-09 67.8 8.3 91 120-237 168-263 (325)
390 PF13578 Methyltransf_24: Meth 97.8 2.6E-06 5.6E-11 69.1 -1.1 94 138-236 1-103 (106)
391 PF13679 Methyltransf_32: Meth 97.8 0.00026 5.6E-09 60.6 11.1 102 132-236 24-129 (141)
392 KOG2198|consensus 97.8 0.00014 3.1E-09 69.9 10.2 104 130-238 152-296 (375)
393 PF03141 Methyltransf_29: Puta 97.8 3.5E-05 7.6E-10 77.0 6.3 106 119-239 101-220 (506)
394 PF03059 NAS: Nicotianamine sy 97.8 0.00023 5E-09 67.1 11.4 100 134-237 121-229 (276)
395 PF03848 TehB: Tellurite resis 97.8 4.9E-05 1.1E-09 67.8 6.4 46 369-417 26-71 (192)
396 TIGR01983 UbiG ubiquinone bios 97.8 3.7E-05 8E-10 71.6 5.9 98 373-478 45-148 (224)
397 cd02440 AdoMet_MTases S-adenos 97.8 0.00012 2.5E-09 58.3 8.1 55 376-432 1-58 (107)
398 COG1041 Predicted DNA modifica 97.8 0.0001 2.2E-09 70.9 8.5 121 353-478 179-309 (347)
399 COG2384 Predicted SAM-dependen 97.7 0.00018 3.9E-09 64.3 9.2 82 131-217 14-95 (226)
400 COG3897 Predicted methyltransf 97.7 7.5E-05 1.6E-09 65.1 6.5 93 133-236 79-176 (218)
401 PF00398 RrnaAD: Ribosomal RNA 97.7 6.9E-05 1.5E-09 71.4 7.0 74 356-434 15-89 (262)
402 PF01170 UPF0020: Putative RNA 97.7 7.5E-05 1.6E-09 66.6 6.8 96 352-450 9-119 (179)
403 COG4262 Predicted spermidine s 97.7 0.00022 4.7E-09 68.0 9.8 108 132-240 288-409 (508)
404 PF09445 Methyltransf_15: RNA 97.7 2.9E-05 6.2E-10 67.2 3.6 68 375-445 1-77 (163)
405 PRK04148 hypothetical protein; 97.7 0.00016 3.4E-09 60.3 7.7 56 369-431 12-68 (134)
406 COG1092 Predicted SAM-dependen 97.7 0.00017 3.6E-09 71.6 9.3 132 357-494 205-359 (393)
407 COG4976 Predicted methyltransf 97.7 4E-05 8.7E-10 68.3 4.3 62 354-420 108-169 (287)
408 TIGR02081 metW methionine bios 97.7 6.2E-05 1.3E-09 68.4 5.6 54 371-430 11-64 (194)
409 COG3963 Phospholipid N-methylt 97.7 0.00047 1E-08 58.6 10.2 75 354-432 31-105 (194)
410 COG4076 Predicted RNA methylas 97.7 8E-05 1.7E-09 64.2 5.7 92 134-235 33-132 (252)
411 KOG1709|consensus 97.7 0.0007 1.5E-08 59.9 11.6 101 132-240 100-208 (271)
412 KOG1271|consensus 97.7 0.00018 4E-09 61.8 7.7 73 358-431 50-128 (227)
413 KOG3191|consensus 97.6 0.0003 6.5E-09 60.6 8.5 57 373-429 43-101 (209)
414 PF02475 Met_10: Met-10+ like- 97.6 6.2E-05 1.3E-09 67.8 4.6 76 370-446 98-178 (200)
415 TIGR01444 fkbM_fam methyltrans 97.6 0.00021 4.5E-09 61.3 7.5 59 136-200 1-59 (143)
416 PF05971 Methyltransf_10: Prot 97.6 0.00046 9.9E-09 65.7 10.1 100 119-224 85-194 (299)
417 KOG1269|consensus 97.6 0.00015 3.2E-09 71.4 6.7 108 125-238 102-215 (364)
418 PRK10742 putative methyltransf 97.6 0.00027 5.8E-09 65.2 7.9 92 123-219 78-176 (250)
419 KOG2730|consensus 97.6 0.00011 2.4E-09 65.2 5.1 78 133-217 94-175 (263)
420 KOG4589|consensus 97.6 0.00018 3.9E-09 62.1 6.1 97 131-243 67-189 (232)
421 PF05219 DREV: DREV methyltran 97.6 0.00032 7E-09 64.6 8.2 111 356-478 74-187 (265)
422 PRK04338 N(2),N(2)-dimethylgua 97.6 0.00037 8E-09 69.8 9.4 61 373-434 57-120 (382)
423 KOG1122|consensus 97.5 0.00056 1.2E-08 66.7 9.5 88 369-461 237-328 (460)
424 PF05724 TPMT: Thiopurine S-me 97.5 0.00013 2.8E-09 67.1 4.8 56 355-416 22-77 (218)
425 COG4798 Predicted methyltransf 97.5 0.00039 8.4E-09 60.5 7.3 103 131-237 46-165 (238)
426 PF02527 GidB: rRNA small subu 97.5 0.00074 1.6E-08 60.2 9.1 109 376-494 51-168 (184)
427 PF01861 DUF43: Protein of unk 97.4 0.0047 1E-07 56.5 14.2 119 116-242 27-153 (243)
428 PF01269 Fibrillarin: Fibrilla 97.4 0.0012 2.7E-08 59.4 9.8 127 356-494 55-205 (229)
429 KOG2187|consensus 97.4 0.00031 6.7E-09 70.4 6.6 67 369-438 379-448 (534)
430 PRK11760 putative 23S rRNA C24 97.4 0.0007 1.5E-08 65.2 8.5 86 131-231 209-296 (357)
431 PRK11524 putative methyltransf 97.4 0.0024 5.2E-08 61.6 12.3 224 186-419 4-251 (284)
432 COG4076 Predicted RNA methylas 97.4 0.00022 4.8E-09 61.5 4.5 56 374-432 33-91 (252)
433 KOG2730|consensus 97.4 0.0002 4.3E-09 63.6 4.1 76 356-434 77-156 (263)
434 COG0500 SmtA SAM-dependent met 97.3 0.0025 5.5E-08 55.6 11.5 99 137-241 52-158 (257)
435 PF09243 Rsm22: Mitochondrial 97.3 0.0017 3.8E-08 62.1 10.7 84 133-221 33-116 (274)
436 KOG3115|consensus 97.3 0.00098 2.1E-08 58.5 7.3 115 373-493 60-200 (249)
437 TIGR01444 fkbM_fam methyltrans 97.2 0.00046 9.9E-09 59.2 5.0 52 376-428 1-55 (143)
438 KOG1331|consensus 97.2 0.00026 5.6E-09 65.7 3.4 94 131-241 43-146 (293)
439 PF06962 rRNA_methylase: Putat 97.2 0.001 2.2E-08 55.7 6.5 77 160-240 1-94 (140)
440 KOG2361|consensus 97.2 0.00055 1.2E-08 61.9 4.9 126 375-505 73-211 (264)
441 KOG4300|consensus 97.2 0.00079 1.7E-08 59.3 5.6 93 375-478 78-181 (252)
442 PF08123 DOT1: Histone methyla 97.2 0.0011 2.3E-08 60.2 6.7 60 353-415 24-83 (205)
443 PLN02823 spermine synthase 97.1 0.0026 5.7E-08 62.3 9.9 103 371-477 101-218 (336)
444 COG2520 Predicted methyltransf 97.1 0.002 4.4E-08 62.6 8.9 106 358-478 177-288 (341)
445 KOG3178|consensus 97.1 0.0019 4.2E-08 62.1 8.6 91 134-239 178-276 (342)
446 KOG3115|consensus 97.1 0.0015 3.2E-08 57.4 6.8 106 133-239 60-184 (249)
447 PF00891 Methyltransf_2: O-met 97.1 0.00075 1.6E-08 63.6 5.4 99 369-478 96-198 (241)
448 PF03602 Cons_hypoth95: Conser 97.1 0.00056 1.2E-08 61.1 4.2 89 354-446 23-123 (183)
449 PRK13699 putative methylase; P 97.1 0.0029 6.4E-08 58.6 9.1 182 190-418 1-205 (227)
450 KOG1596|consensus 97.1 0.0016 3.6E-08 58.6 6.8 101 369-478 152-260 (317)
451 PF04672 Methyltransf_19: S-ad 97.1 0.0081 1.8E-07 56.2 11.6 117 119-242 55-194 (267)
452 COG0742 N6-adenine-specific me 97.0 0.0037 8.1E-08 55.1 8.7 76 372-449 42-126 (187)
453 PF13679 Methyltransf_32: Meth 97.0 0.0015 3.3E-08 55.8 6.1 47 372-418 24-73 (141)
454 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.0 0.0023 4.9E-08 59.9 7.5 104 132-238 55-199 (256)
455 COG0357 GidB Predicted S-adeno 97.0 0.0046 1E-07 56.1 9.1 111 374-494 68-188 (215)
456 PF07942 N2227: N2227-like pro 97.0 0.0065 1.4E-07 57.2 10.3 104 133-240 56-203 (270)
457 COG1189 Predicted rRNA methyla 97.0 0.0024 5.1E-08 58.0 6.9 97 132-240 78-180 (245)
458 PF03291 Pox_MCEL: mRNA cappin 96.9 0.0011 2.5E-08 64.8 5.2 44 373-418 62-105 (331)
459 KOG3987|consensus 96.9 0.00025 5.3E-09 62.2 0.4 110 113-239 91-208 (288)
460 PRK11760 putative 23S rRNA C24 96.9 0.0096 2.1E-07 57.5 10.8 87 371-471 209-295 (357)
461 COG1064 AdhP Zn-dependent alco 96.8 0.0058 1.3E-07 59.3 9.1 94 130-237 163-258 (339)
462 PF07091 FmrO: Ribosomal RNA m 96.8 0.0054 1.2E-07 56.5 8.3 92 121-220 93-184 (251)
463 COG0286 HsdM Type I restrictio 96.8 0.012 2.7E-07 61.1 12.1 101 111-217 166-274 (489)
464 TIGR00006 S-adenosyl-methyltra 96.8 0.0046 9.9E-08 59.4 8.1 96 358-458 7-104 (305)
465 KOG2198|consensus 96.8 0.011 2.5E-07 57.1 10.6 104 357-461 139-252 (375)
466 KOG2671|consensus 96.8 0.0028 6E-08 60.2 6.3 81 131-217 206-294 (421)
467 KOG1499|consensus 96.8 0.0019 4.1E-08 62.0 5.2 61 445-507 58-121 (346)
468 KOG4589|consensus 96.7 0.0045 9.8E-08 53.7 6.4 36 371-406 67-102 (232)
469 PF02005 TRM: N2,N2-dimethylgu 96.7 0.0074 1.6E-07 60.2 8.7 103 133-238 49-154 (377)
470 KOG1975|consensus 96.7 0.0044 9.5E-08 58.5 6.6 107 369-478 113-236 (389)
471 PF05185 PRMT5: PRMT5 arginine 96.7 0.0019 4E-08 66.0 4.6 72 374-445 187-266 (448)
472 COG0293 FtsJ 23S rRNA methylas 96.7 0.0039 8.5E-08 55.8 6.0 39 370-408 42-80 (205)
473 PF10294 Methyltransf_16: Puta 96.6 0.0024 5.3E-08 56.6 4.5 49 370-420 42-90 (173)
474 PF01728 FtsJ: FtsJ-like methy 96.6 0.011 2.4E-07 52.9 8.3 37 373-409 23-59 (181)
475 PF04989 CmcI: Cephalosporin h 96.6 0.018 3.9E-07 51.8 9.4 99 133-237 32-146 (206)
476 PF11968 DUF3321: Putative met 96.5 0.0044 9.4E-08 55.7 5.4 81 135-239 53-150 (219)
477 PF10672 Methyltrans_SAM: S-ad 96.4 0.0025 5.4E-08 60.8 3.2 116 372-491 122-258 (286)
478 PHA01634 hypothetical protein 96.4 0.0068 1.5E-07 49.1 4.9 49 373-423 28-76 (156)
479 TIGR00308 TRM1 tRNA(guanine-26 96.3 0.0044 9.5E-08 61.8 4.6 61 375-435 46-109 (374)
480 PF02384 N6_Mtase: N-6 DNA Met 96.3 0.0072 1.6E-07 59.3 5.8 122 356-478 30-182 (311)
481 KOG1500|consensus 96.2 0.01 2.2E-07 56.3 6.2 59 447-507 177-238 (517)
482 COG1889 NOP1 Fibrillarin-like 96.2 0.048 1E-06 48.2 9.7 59 354-413 56-115 (231)
483 COG0421 SpeE Spermidine syntha 96.2 0.037 8E-07 52.8 9.7 99 374-478 77-189 (282)
484 KOG1562|consensus 96.2 0.011 2.5E-07 55.1 6.0 104 131-236 119-234 (337)
485 PF04445 SAM_MT: Putative SAM- 96.2 0.015 3.3E-07 53.4 6.8 86 131-219 71-163 (234)
486 COG1063 Tdh Threonine dehydrog 96.1 0.052 1.1E-06 54.1 11.3 97 132-237 167-268 (350)
487 PF11599 AviRa: RRNA methyltra 96.1 0.009 2E-07 53.2 4.8 104 133-236 51-212 (246)
488 KOG0024|consensus 96.0 0.044 9.5E-07 52.2 9.3 97 131-237 167-272 (354)
489 PF04989 CmcI: Cephalosporin h 96.0 0.021 4.6E-07 51.3 6.9 124 356-483 17-151 (206)
490 COG3129 Predicted SAM-dependen 96.0 0.047 1E-06 49.2 8.9 103 118-224 59-170 (292)
491 COG0116 Predicted N6-adenine-s 96.0 0.039 8.5E-07 54.2 9.2 99 354-454 174-316 (381)
492 COG4798 Predicted methyltransf 95.9 0.033 7.2E-07 48.8 7.4 38 369-406 44-81 (238)
493 PF01795 Methyltransf_5: MraW 95.9 0.012 2.6E-07 56.5 5.3 98 360-461 9-108 (310)
494 KOG4058|consensus 95.9 0.036 7.9E-07 46.2 7.0 108 119-236 60-170 (199)
495 PF06080 DUF938: Protein of un 95.8 0.084 1.8E-06 47.5 9.9 50 357-410 11-61 (204)
496 PF13578 Methyltransf_24: Meth 95.8 0.0022 4.8E-08 51.7 -0.2 58 378-435 1-63 (106)
497 KOG1253|consensus 95.7 0.013 2.9E-07 58.7 4.6 104 131-238 107-216 (525)
498 PRK10742 putative methyltransf 95.6 0.018 3.9E-07 53.3 5.0 77 369-448 82-175 (250)
499 COG1867 TRM1 N2,N2-dimethylgua 95.6 0.053 1.2E-06 52.6 8.2 99 134-238 53-154 (380)
500 PF01564 Spermine_synth: Sperm 95.6 0.021 4.6E-07 53.7 5.4 118 369-492 72-211 (246)
No 1
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-31 Score=234.65 Aligned_cols=196 Identities=36% Similarity=0.613 Sum_probs=183.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCC----CCCCCcccccCCCcccchhHHHHHHHHHHhhcCCCCCEEEEEc
Q psy7829 66 TDLVNHLRDIGKIRTERVAQAFYKVDRGNFANE----EPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLG 141 (511)
Q Consensus 66 ~~l~~~l~~~~~~~~~~~~~a~~~~~r~~~~~~----~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG 141 (511)
..+.++|+..++ .++.+.+||..+||+.|+|. .+|.|.++++++++++++|+++++++++|. ++++.+|||||
T Consensus 4 ~~l~~~lr~~~i-~~~~v~~A~~~vPRe~FVp~~~~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~--~~~g~~VLEIG 80 (209)
T COG2518 4 RMLVERLRTEGI-TDERVLKAFLAVPRELFVPAAYKHLAYEDRALPIGCGQTISAPHMVARMLQLLE--LKPGDRVLEIG 80 (209)
T ss_pred HHHHHHHHHcCC-CcHHHHHHHHhCCHHhccCchhhcccccCCcccCCCCceecCcHHHHHHHHHhC--CCCCCeEEEEC
Confidence 568899999996 56999999999999999996 499999999999999999999999999998 99999999999
Q ss_pred CCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCCchH
Q psy7829 142 SGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVP 221 (511)
Q Consensus 142 ~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~ 221 (511)
|||||.++.+|+..+ +|+++|+.+...+.|++|++.. +..||.++++|...++++.++||.|++......+|
T Consensus 81 tGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~l-----g~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP 152 (209)
T COG2518 81 TGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETL-----GYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVP 152 (209)
T ss_pred CCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHc-----CCCceEEEECCcccCCCCCCCcCEEEEeeccCCCC
Confidence 999999999999974 6999999999999999999995 57789999999999998889999999999999999
Q ss_pred HHHHhhcccCcEEEEEEccCCCcceEEEEEEecCCeEEEEeecceEEEeccc
Q psy7829 222 SRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMR 273 (511)
Q Consensus 222 ~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 273 (511)
+.+.++|||||++++|++ ....+.+.++.+..++.+..+..+.+.|+|+.+
T Consensus 153 ~~Ll~QL~~gGrlv~PvG-~~~~q~l~~~~k~~~~~~~~~~l~~v~~vPl~~ 203 (209)
T COG2518 153 EALLDQLKPGGRLVIPVG-SGPAQRLLRITKDGDGNFERRDLFNVRFVPLVG 203 (209)
T ss_pred HHHHHhcccCCEEEEEEc-cCCcEEEEEEEEcCCCcEEEeeeccceeeecCC
Confidence 999999999999999999 556788899999888899999999999999987
No 2
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=100.00 E-value=1.3e-31 Score=242.40 Aligned_cols=203 Identities=37% Similarity=0.648 Sum_probs=175.2
Q ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCC----CCCCCcccccCCCcccchhHHHHHHHHHHhhcCCCCCEEEE
Q psy7829 64 CQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANE----EPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLD 139 (511)
Q Consensus 64 ~~~~l~~~l~~~~~~~~~~~~~a~~~~~r~~~~~~----~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~vLD 139 (511)
++..|+++|+..+.+.++.+.+||+.+||+.|+|. .+|.|.+++++.++++++|.+++.+++.|. +++|.+|||
T Consensus 1 ~~~~lv~~l~~~g~v~~~~v~~A~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L~--l~pg~~VLe 78 (209)
T PF01135_consen 1 SNKALVDNLIRPGDVTDPRVLDAFRAVPREDFVPPAFRDLAYEDRPLPIGCGQTISAPSMVARMLEALD--LKPGDRVLE 78 (209)
T ss_dssp CHHHHHHHHHHTTSS-SHHHHHHHHHS-GGGCSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTT--C-TT-EEEE
T ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHhCCHHHhCchhhhcCCCCCCCeeecceeechHHHHHHHHHHHHh--cCCCCEEEE
Confidence 46789999999997899999999999999999998 599999999999999999999999999998 999999999
Q ss_pred EcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCCc
Q psy7829 140 LGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSE 219 (511)
Q Consensus 140 iG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~ 219 (511)
||||+||.+..+++..++.++|+++|+++.+++.|++++... +..|+.++++|...+++..++||.|+++..++.
T Consensus 79 IGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~-----~~~nv~~~~gdg~~g~~~~apfD~I~v~~a~~~ 153 (209)
T PF01135_consen 79 IGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARL-----GIDNVEVVVGDGSEGWPEEAPFDRIIVTAAVPE 153 (209)
T ss_dssp ES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHH-----TTHSEEEEES-GGGTTGGG-SEEEEEESSBBSS
T ss_pred ecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHh-----ccCceeEEEcchhhccccCCCcCEEEEeeccch
Confidence 999999999999999988889999999999999999999986 466999999999888877789999999999999
Q ss_pred hHHHHHhhcccCcEEEEEEccCCCcceEEEEEEecCCeEEEEeecceEEEecccc
Q psy7829 220 VPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRK 274 (511)
Q Consensus 220 ~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 274 (511)
++..+.++||+||+|++++.. ...+.+..+.+..++.+.....+.|.|+||.+.
T Consensus 154 ip~~l~~qL~~gGrLV~pi~~-~~~~~l~~~~k~~~g~~~~~~~~~~~fvpl~~~ 207 (209)
T PF01135_consen 154 IPEALLEQLKPGGRLVAPIGQ-GGSQRLVRITKKGDGEFSREELFPVRFVPLVGG 207 (209)
T ss_dssp --HHHHHTEEEEEEEEEEESS-SSSEEEEEEEEETTTEEEEEEEEEE---B-BSC
T ss_pred HHHHHHHhcCCCcEEEEEEcc-CCceEEEEEEEeCCCcEEEEEEeeEEEEeccCC
Confidence 999999999999999999998 778899999999889999999999999999864
No 3
>KOG1661|consensus
Probab=99.97 E-value=4.6e-30 Score=220.86 Aligned_cols=224 Identities=42% Similarity=0.669 Sum_probs=205.9
Q ss_pred cccCCCccHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCC----CCCCCcccccCCCcccchhHHHHHHHHHHhhcCC
Q psy7829 57 HFKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANE----EPYQDVSASLGYAGVMNAPNQIADAAENLKLHLV 132 (511)
Q Consensus 57 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~a~~~~~r~~~~~~----~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~ 132 (511)
-|..++.++.+|+++|+..++++...+.+||+.++|..|.|. .+|.|.++.++++.++++|++++.+++.|..+++
T Consensus 2 ~~~s~gs~n~~LId~L~~~~~Ir~~~v~~A~~a~dR~dy~p~~~~~n~y~d~pq~~G~n~~iSAp~mha~~le~L~~~L~ 81 (237)
T KOG1661|consen 2 GWVSSGSDNDDLIDNLRENKIIRTRRVEQAMRATDRSDYAPRSERTNPYMDSPQKIGYNLTISAPHMHATALEYLDDHLQ 81 (237)
T ss_pred CccccCcchHHHHHHHHhcchhHHHHHHHHHHhhchhhccccccccCCCCCCccccCCceEEcchHHHHHHHHHHHHhhc
Confidence 466778999999999999999999999999999999999998 8999999999999999999999999999998999
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCceE-EEEeCCHHHHHHHHHHHhccC-----CCcCCCCCeEEEEccCCCCCCCCC
Q psy7829 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKV-IGVEHIPELIEASLRNISKGN-----KDLLDSGRVRIVEADAREGYLPEA 206 (511)
Q Consensus 133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v-~~iD~~~~~~~~a~~~~~~~~-----~~~~~~~~v~~~~~d~~~~~~~~~ 206 (511)
||.++||+|+|||+++..+++.+++.+.+ +|||..++.++.+++|+.+.- ...+...++.++.+|....+.+..
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a 161 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQA 161 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccC
Confidence 99999999999999999999888776654 999999999999999998753 112445678999999999888889
Q ss_pred CccEEEecCCCCchHHHHHhhcccCcEEEEEEccCCCcceEEEEEEecCCeEEEEeecceEEEecccccccccc
Q psy7829 207 PYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDI 280 (511)
Q Consensus 207 ~fD~I~~~~~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 280 (511)
+||.|++.+....+++++.++|+|||+++++++..+..+.++...+..++.......+++.|+|+.+...+|..
T Consensus 162 ~YDaIhvGAaa~~~pq~l~dqL~~gGrllip~~~~~~~q~~~~~dk~~~gki~~~~~f~v~yvPlt~~~~q~~~ 235 (237)
T KOG1661|consen 162 PYDAIHVGAAASELPQELLDQLKPGGRLLIPVGQDGGTQYLRQIDKNEDGKIKLRTLFSVRYVPLTSRESQPSR 235 (237)
T ss_pred CcceEEEccCccccHHHHHHhhccCCeEEEeecccCceeEEEeecccccCceeeeEeeceEEEeccccccccCC
Confidence 99999999999999999999999999999999998999999999999889999999999999999998888764
No 4
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.96 E-value=3.9e-27 Score=216.40 Aligned_cols=200 Identities=34% Similarity=0.592 Sum_probs=179.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCC----CCCCcccccCCCcccchhHHHHHHHHHHhhcCCCCCEEEEE
Q psy7829 65 QTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEE----PYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDL 140 (511)
Q Consensus 65 ~~~l~~~l~~~~~~~~~~~~~a~~~~~r~~~~~~~----~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~vLDi 140 (511)
+..+++++...+.+.++.+.+||+.+||+.|+|.. +|.|.+++++.+.++++|.+.+.+++.+. ++++.+|||+
T Consensus 6 ~~~~v~~l~~~~~v~~~~v~~a~~~v~R~~fvp~~~~~~ay~d~~~~~~~g~~~~~p~~~~~~~~~l~--~~~g~~VLdI 83 (212)
T PRK13942 6 KRRVIEELIREGYIKSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTISAIHMVAIMCELLD--LKEGMKVLEI 83 (212)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHcCCHhhcCCchhhhcCcCCCCccCCCCCEeCcHHHHHHHHHHcC--CCCcCEEEEE
Confidence 46799999988878999999999999999999873 89999999999999999999999999987 8899999999
Q ss_pred cCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCCch
Q psy7829 141 GSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEV 220 (511)
Q Consensus 141 G~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~ 220 (511)
|||+|+.+..+++..++.++|+++|+++++++.++++++..+ ..+++++++|+...+...++||+|+++...+++
T Consensus 84 G~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g-----~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~~ 158 (212)
T PRK13942 84 GTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG-----YDNVEVIVGDGTLGYEENAPYDRIYVTAAGPDI 158 (212)
T ss_pred CCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCeEEEECCcccCCCcCCCcCEEEECCCcccc
Confidence 999999999999988777899999999999999999998853 568999999998766656889999999999999
Q ss_pred HHHHHhhcccCcEEEEEEccCCCcceEEEEEEecCCeEEEEeecceEEEecccc
Q psy7829 221 PSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRK 274 (511)
Q Consensus 221 ~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 274 (511)
+..+.+.|||||+++++++.. .+.+..+.+. .+.+.....+.+.|+|+.+.
T Consensus 159 ~~~l~~~LkpgG~lvi~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~f~~~~~~ 209 (212)
T PRK13942 159 PKPLIEQLKDGGIMVIPVGSY--SQELIRVEKD-NGKIIKKKLGEVAFVPLIGK 209 (212)
T ss_pred hHHHHHhhCCCcEEEEEEcCC--CcEEEEEEEE-CCEEEEEEeccEEEEecccC
Confidence 999999999999999998754 4677777775 47899999999999999864
No 5
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.96 E-value=5.6e-27 Score=214.54 Aligned_cols=200 Identities=31% Similarity=0.441 Sum_probs=175.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCC----CCCCcccccCCCcccchhHHHHHHHHHHhhcCCCCCEEEEE
Q psy7829 65 QTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEE----PYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDL 140 (511)
Q Consensus 65 ~~~l~~~l~~~~~~~~~~~~~a~~~~~r~~~~~~~----~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~vLDi 140 (511)
+..|+++++..+.+.++.+.+||+.+||+.|+|.. +|.|.++++..+.+++.|.+.+.+++.+. +.++.+|||+
T Consensus 2 ~~~lv~~~~~~~~v~~~~v~~a~~~vpR~~fv~~~~~~~ay~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VLDi 79 (205)
T PRK13944 2 AKRLVEELVREGIIKSERVKKAMLSVPREEFVMPEYRMMAYEDRPLPLFAGATISAPHMVAMMCELIE--PRPGMKILEV 79 (205)
T ss_pred HHHHHHHHHHcCCcCCHHHHHHHHhCCHhHcCChhHHhcCccCCCcccCCCCEechHHHHHHHHHhcC--CCCCCEEEEE
Confidence 35789999999877899999999999999999873 89999999999999999999999999886 7788999999
Q ss_pred cCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCCch
Q psy7829 141 GSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEV 220 (511)
Q Consensus 141 G~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~ 220 (511)
|||+|+.+..+++..++.++|+++|+++++++.|++++..++ ...+++++.+|+.+.++..++||+|+++.+..++
T Consensus 80 G~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~----~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~ 155 (205)
T PRK13944 80 GTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG----YWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTI 155 (205)
T ss_pred CcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCcEEEEECCcccCCccCCCccEEEEccCcchh
Confidence 999999999999988667899999999999999999998764 2346999999998766555789999999999999
Q ss_pred HHHHHhhcccCcEEEEEEccCCCcceEEEEEEecCCeEEEEeecceEEEecc
Q psy7829 221 PSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIM 272 (511)
Q Consensus 221 ~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 272 (511)
++++.++|+|||+|++++... ..+.+..+++. .+.+....++.|.|+|+.
T Consensus 156 ~~~l~~~L~~gG~lvi~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~f~pl~ 205 (205)
T PRK13944 156 PSALVRQLKDGGVLVIPVEEG-VGQVLYKVVKR-GEKVEKRAITYVLFVPLR 205 (205)
T ss_pred hHHHHHhcCcCcEEEEEEcCC-CceEEEEEEEe-CCEEEEEEeceEEEEecC
Confidence 999999999999999998754 34667777775 467888889999999973
No 6
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.96 E-value=8.7e-27 Score=215.41 Aligned_cols=207 Identities=33% Similarity=0.562 Sum_probs=183.3
Q ss_pred CccHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCC----CCCCCcccccCCCcccchhHHHHHHHHHHhhcCCCCCEE
Q psy7829 62 GTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANE----EPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKV 137 (511)
Q Consensus 62 ~~~~~~l~~~l~~~~~~~~~~~~~a~~~~~r~~~~~~----~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~v 137 (511)
..++.+++++++..+.+.++.+.+||+.+||+.|.+. .+|.+.+++++.+.++++|.+.+.+++.+. ++++.+|
T Consensus 4 ~~~~~~~v~~~~~~~~v~~~~v~~a~~~v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~V 81 (215)
T TIGR00080 4 ESQKKALIDKLINEGYIKSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLE--LKPGMKV 81 (215)
T ss_pred hHHHHHHHHHHHhcCCcCCHHHHHHHHhCChhhhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhC--CCCcCEE
Confidence 3567899999999987799999999999999999997 489999999999999999999999999987 7899999
Q ss_pred EEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCC
Q psy7829 138 LDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCV 217 (511)
Q Consensus 138 LDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~ 217 (511)
||+|||+|+.+..+++..++.++|+++|+++++++.|++++...+ .++++++++|+.+.+...++||+|+++.+.
T Consensus 82 LDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g-----~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~ 156 (215)
T TIGR00080 82 LEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG-----LDNVIVIVGDGTQGWEPLAPYDRIYVTAAG 156 (215)
T ss_pred EEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC-----CCCeEEEECCcccCCcccCCCCEEEEcCCc
Confidence 999999999999999998667889999999999999999998864 568999999998765555789999999999
Q ss_pred CchHHHHHhhcccCcEEEEEEccCCCcceEEEEEEecCCeEEEEeecceEEEecccccccc
Q psy7829 218 SEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQM 278 (511)
Q Consensus 218 ~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 278 (511)
..+++.+.+.|||||++++++.. ..+.+..+.+. .+.+.....+.+.|+||.+...+|
T Consensus 157 ~~~~~~~~~~L~~gG~lv~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~pl~~~~~~~ 214 (215)
T TIGR00080 157 PKIPEALIDQLKEGGILVMPVGE--YLQVLKRAEKR-GGEIIIKDVEPVAFVPLVGGEGFQ 214 (215)
T ss_pred ccccHHHHHhcCcCcEEEEEEcC--CceEEEEEEEe-CCEEEEEEeeeEEEEeCCCCccCC
Confidence 99999999999999999999876 55667777765 577889999999999998766554
No 7
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.92 E-value=2.6e-23 Score=192.06 Aligned_cols=199 Identities=32% Similarity=0.516 Sum_probs=173.6
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCC----CCCCCcccccCCCcccchhHHHHHHHHHHhhcCCCCCEEE
Q psy7829 63 TCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANE----EPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVL 138 (511)
Q Consensus 63 ~~~~~l~~~l~~~~~~~~~~~~~a~~~~~r~~~~~~----~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~vL 138 (511)
..+..++++|+..+ +.++.+.++|+.+||+.|+|+ ..|.+.+.+++.+..+++|.+.+.+++.+. +.++.+||
T Consensus 7 ~~~~~~v~~l~~~~-~~~~~~~~a~~~~~r~~f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~--~~~~~~VL 83 (212)
T PRK00312 7 ERFARLVLRLRAEG-ILDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLE--LKPGDRVL 83 (212)
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHcCCHhHcCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcC--CCCCCEEE
Confidence 34678999999999 589999999999999999985 489999999999999999999999999886 78899999
Q ss_pred EEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCC
Q psy7829 139 DLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVS 218 (511)
Q Consensus 139 DiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~ 218 (511)
|+|||+|+.+..+++.. .+|+++|+++.+++.+++++++.+ ..+++++.+|..+.+...++||+|+++..++
T Consensus 84 eiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~ 155 (212)
T PRK00312 84 EIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLG-----LHNVSVRHGDGWKGWPAYAPFDRILVTAAAP 155 (212)
T ss_pred EECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCC-----CCceEEEECCcccCCCcCCCcCEEEEccCch
Confidence 99999999999888875 269999999999999999998853 5579999999876655457899999999999
Q ss_pred chHHHHHhhcccCcEEEEEEccCCCcceEEEEEEecCCeEEEEeecceEEEecccc
Q psy7829 219 EVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRK 274 (511)
Q Consensus 219 ~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 274 (511)
++++.+.+.|+|||++++++. ....+.+..+.+ .++.+....++.+.|.|+.+.
T Consensus 156 ~~~~~l~~~L~~gG~lv~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~ 209 (212)
T PRK00312 156 EIPRALLEQLKEGGILVAPVG-GEEQQLLTRVRK-RGGRFEREVLEEVRFVPLVKG 209 (212)
T ss_pred hhhHHHHHhcCCCcEEEEEEc-CCCceEEEEEEE-cCCeEEEEEEccEEEEecCCC
Confidence 999999999999999999998 455666777776 466788899999999998864
No 8
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.89 E-value=9.1e-22 Score=204.22 Aligned_cols=318 Identities=16% Similarity=0.180 Sum_probs=180.2
Q ss_pred HHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC
Q psy7829 122 DAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG 201 (511)
Q Consensus 122 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 201 (511)
.+++.+. ..++.+|||+|||+|.++..+++.. .+|+++|+++.+++.+++... ..++++++++|+...
T Consensus 28 ~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~-------~~~~i~~~~~d~~~~ 95 (475)
T PLN02336 28 EILSLLP--PYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESING-------HYKNVKFMCADVTSP 95 (475)
T ss_pred HHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhc-------cCCceEEEEeccccc
Confidence 3445543 4467799999999999999999874 369999999999988765322 245799999998632
Q ss_pred --CCCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEEEccCCCcceEEEEEEecCCeEEEEeecceEEEec
Q psy7829 202 --YLPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAI 271 (511)
Q Consensus 202 --~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 271 (511)
..+.++||+|+++.+++++ ++++.+.|||||.+++.-........+.. ..+ +..+...
T Consensus 96 ~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~---~~~---------~~~~~~~ 163 (475)
T PLN02336 96 DLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKR---KNN---------PTHYREP 163 (475)
T ss_pred ccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccc---cCC---------CCeecCh
Confidence 2345789999999887653 36789999999999885321111100000 000 0011111
Q ss_pred ccccccccccccccCccccccccccccchhhHHHH--hhh-------hhccCCCcccCccccCCCCCCCCCceeeecccc
Q psy7829 272 MRKALQMDIHKFQMDPVDENLFTLMDKDSDELFSE--RVW-------ELKQDPLYTTEKWIPQPPGYTTPGEITTRDKYG 342 (511)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~-------~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~ 342 (511)
......+..+++....................|.- .-| ............-+.+..+|..+++...+..|+
T Consensus 164 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~f~g 243 (475)
T PLN02336 164 RFYTKVFKECHTRDEDGNSFELSLVGCKCIGAYVKNKKNQNQICWLWQKVSSTNDKGFQRFLDNVQYKSSGILRYERVFG 243 (475)
T ss_pred HHHHHHHHHheeccCCCCEEEEEEEEeechhhhhhccCCcceEEEEEEeecCCcchhHHHHhhhhccccccHHHHHHHhC
Confidence 11111122222222111111111111111111110 000 000000000001111113555566666666665
Q ss_pred ccccCCCCCCCCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc--c
Q psy7829 343 RLVHGSAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS--T 420 (511)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~--~ 420 (511)
..+... ..-..+..++.. +.+.++.+|||||||+|..++.+++..+ .+|+|+|++++++..+.++.. .
T Consensus 244 ~~~~v~------~~v~~te~l~~~--~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvDiS~~~l~~A~~~~~~~~ 313 (475)
T PLN02336 244 EGFVST------GGLETTKEFVDK--LDLKPGQKVLDVGCGIGGGDFYMAENFD--VHVVGIDLSVNMISFALERAIGRK 313 (475)
T ss_pred CCCCCC------chHHHHHHHHHh--cCCCCCCEEEEEeccCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhhcCC
Confidence 433322 222356667776 5677899999999999999999998764 799999999999988877654 2
Q ss_pred cccccccccccccc--cccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 421 NHIDLIANETIEII--PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 421 ~~v~~i~~d~~~~l--~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
.+++++.+|..... +..+|.++... ++..-...-.+...+++.|+|+|.++..
T Consensus 314 ~~v~~~~~d~~~~~~~~~~fD~I~s~~-----~l~h~~d~~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 314 CSVEFEVADCTKKTYPDNSFDVIYSRD-----TILHIQDKPALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred CceEEEEcCcccCCCCCCCEEEEEECC-----cccccCCHHHHHHHHHHHcCCCeEEEEE
Confidence 35777777654321 23455544321 1111112345567788889999987754
No 9
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.87 E-value=7.3e-21 Score=195.99 Aligned_cols=329 Identities=16% Similarity=0.118 Sum_probs=200.7
Q ss_pred CccCCCCCCCcccccCCCcccchhHHHHHHHHHHhhc-------------------------CCCCCEEEEEcCCccHHH
Q psy7829 94 NFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLH-------------------------LVDGAKVLDLGSGSGYQT 148 (511)
Q Consensus 94 ~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~-------------------------~~~~~~vLDiG~G~G~~~ 148 (511)
.......|.+..|.++.++.+++|.+...+-..+... ..++.+|||+|||+|.++
T Consensus 74 YI~G~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~ia 153 (506)
T PRK01544 74 YITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIA 153 (506)
T ss_pred HHhCcCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHH
Confidence 3444568899999999999999998766554433211 013468999999999999
Q ss_pred HHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCC----------
Q psy7829 149 CVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVS---------- 218 (511)
Q Consensus 149 ~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~---------- 218 (511)
+.++... +..+|+++|+|+.+++.|++|+..++ ..++++++++|+.+... .++||+|++++++-
T Consensus 154 i~la~~~-p~~~v~avDis~~al~~A~~N~~~~~----l~~~v~~~~~D~~~~~~-~~~fDlIvsNPPYi~~~~~~~l~~ 227 (506)
T PRK01544 154 ISLLCEL-PNANVIATDISLDAIEVAKSNAIKYE----VTDRIQIIHSNWFENIE-KQKFDFIVSNPPYISHSEKSEMAI 227 (506)
T ss_pred HHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcC----CccceeeeecchhhhCc-CCCccEEEECCCCCCchhhhhcCc
Confidence 9999886 67899999999999999999998764 24579999999865442 36799999987651
Q ss_pred ----------------------chHHHHHhhcccCcEEEEEEccCCCcceEEEEEEecCCeE-EEEeecc-eEEEecccc
Q psy7829 219 ----------------------EVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTL-QKTDLFE-VAYDAIMRK 274 (511)
Q Consensus 219 ----------------------~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~l~~~ 274 (511)
.+.+.+.+.|+|||.+++.++..+.......+.+..-... ...+..+ -+++-....
T Consensus 228 ~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~~~~ 307 (506)
T PRK01544 228 ETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNIESVYKDLQGHSRVILISPI 307 (506)
T ss_pred hhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcCCCceEEEecCCCCceEEEeccc
Confidence 0124567899999999998875543321111111100000 0000000 011111100
Q ss_pred cccccccccccCccccccccccccchhhHHHHhhhhhccCCCcccCccccCCCCCCCCCceeeeccccccccCCCCCCCC
Q psy7829 275 ALQMDIHKFQMDPVDENLFTLMDKDSDELFSERVWELKQDPLYTTEKWIPQPPGYTTPGEITTRDKYGRLVHGSAPDNGP 354 (511)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (511)
. ..+ .+... ... .-....+.+.+..+ |. .+.
T Consensus 308 ~--~~r-s~~rr----~g~--~~~~~q~~~~e~~~-----p~-----------------------------------~~i 338 (506)
T PRK01544 308 N--LNR-SYARR----IGK--SLSGVQQNLLDNEL-----PK-----------------------------------YLF 338 (506)
T ss_pred c--CCc-ceecc----CCC--CCCHHHHHHHHhhh-----hh-----------------------------------hCC
Confidence 0 000 00000 000 00001111111111 00 000
Q ss_pred CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhh---cccccccccccccc
Q psy7829 355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIAN---ISTNHIDLIANETI 431 (511)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~---~~~~~v~~i~~d~~ 431 (511)
. . .. +.-..+..+||||||.|.+++.+|+.. |+..++|+|+....+.++.+. .+..|+.++.++..
T Consensus 339 ~-~---ek------lf~~~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~ 407 (506)
T PRK01544 339 S-K---EK------LVNEKRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLD 407 (506)
T ss_pred C-H---HH------hCCCCCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence 0 0 00 122457889999999999999999987 889999999987666654433 45678888777642
Q ss_pred cc---c-cccchhhhhcccCCc--------EEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcC
Q psy7829 432 EI---I-PHILDLCYLNLHRGA--------KVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANIS 493 (511)
Q Consensus 432 ~~---l-~~~~d~i~~~l~~~~--------~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~ 493 (511)
.. + +..++.++.+.+..| +++ .-.+...+++.|+|||.+... ....+.+.+.+.+.+
T Consensus 408 ~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~-----~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~ 479 (506)
T PRK01544 408 LILNDLPNNSLDGIYILFPDPWIKNKQKKKRIF-----NKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNG 479 (506)
T ss_pred HHHHhcCcccccEEEEECCCCCCCCCCcccccc-----CHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCC
Confidence 22 2 244666666665444 555 234567888999999999877 555555555555543
No 10
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.87 E-value=1.9e-20 Score=180.59 Aligned_cols=198 Identities=29% Similarity=0.406 Sum_probs=159.5
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCC-----CCCCccccc-CCC---cccchhHHHHHHHHHHhhcCCCCCE
Q psy7829 66 TDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEE-----PYQDVSASL-GYA---GVMNAPNQIADAAENLKLHLVDGAK 136 (511)
Q Consensus 66 ~~l~~~l~~~~~~~~~~~~~a~~~~~r~~~~~~~-----~y~~~~~~~-~~~---~~~~~p~~~~~~~~~l~~~~~~~~~ 136 (511)
..++.+|+..|+ .+ .+.+||+.+||+.|+|.. .|.|.++++ ..+ ..+++|.+.+.+++.+. ++++.+
T Consensus 8 ~~lv~~l~~~gv-~d-~vl~a~~~vpRe~Fvp~~~~~~~aY~D~~l~~~~~g~~~~~~~~p~l~a~ll~~L~--i~~g~~ 83 (322)
T PRK13943 8 EKLFWILKKYGI-SD-HIAKAFLEVPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKGMR 83 (322)
T ss_pred HHHHHHHHHcCC-cH-HHHHHHHcCCHHHcCCcchhhhhccCCCcccccCCCcccccCCcHHHHHHHHHhcC--CCCCCE
Confidence 678999999995 55 999999999999999973 488888775 344 47789999999999886 778999
Q ss_pred EEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCC
Q psy7829 137 VLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGC 216 (511)
Q Consensus 137 vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~ 216 (511)
|||+|||+|+++..+++..+..++|+++|+++++++.|+++++..+ .+++.++++|+...+...++||+|+++..
T Consensus 84 VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g-----~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g 158 (322)
T PRK13943 84 VLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG-----IENVIFVCGDGYYGVPEFAPYDVIFVTVG 158 (322)
T ss_pred EEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEeCChhhcccccCCccEEEECCc
Confidence 9999999999999999987555789999999999999999998864 56899999998765554467999999988
Q ss_pred CCchHHHHHhhcccCcEEEEEEccC-CCcceEEEEEEecCCeEEEEeecceEEEeccc
Q psy7829 217 VSEVPSRVLNQLKKGGRILAPIGPM-DDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMR 273 (511)
Q Consensus 217 ~~~~~~~~~~~LkpgG~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 273 (511)
.+.++..+.+.|+|||++++++... ...+......+. .+.+.....+.+.|++..+
T Consensus 159 ~~~ip~~~~~~LkpgG~Lvv~~~~~l~~~~~~~~~~r~-~~~~~~~~~~~~~~l~~~G 215 (322)
T PRK13943 159 VDEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKK-DPYLVGNYKLETRFIKAGG 215 (322)
T ss_pred hHHhHHHHHHhcCCCCEEEEEeCCccCCCCceEEEEec-CCCceEEEEEEeeEEcccc
Confidence 8888999999999999999987643 122333334443 4456666667777777743
No 11
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.68 E-value=3.1e-16 Score=143.41 Aligned_cols=107 Identities=28% Similarity=0.443 Sum_probs=93.3
Q ss_pred HHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC
Q psy7829 123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY 202 (511)
Q Consensus 123 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 202 (511)
+++.+. ..+|.+|||+|||||..+..+++..+ .++|+++|+|+.|++.+++++...+ ..+++|+++|+++.+
T Consensus 43 ~i~~~~--~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~-----~~~i~fv~~dAe~LP 114 (238)
T COG2226 43 LISLLG--IKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKG-----VQNVEFVVGDAENLP 114 (238)
T ss_pred HHHhhC--CCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccC-----ccceEEEEechhhCC
Confidence 344443 45899999999999999999999986 8999999999999999999998854 345999999999988
Q ss_pred CCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEE
Q psy7829 203 LPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAP 237 (511)
Q Consensus 203 ~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~ 237 (511)
.++++||+|.+...++++ ++++.|+|||||++++.
T Consensus 115 f~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 115 FPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred CCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEE
Confidence 888999999999988765 38999999999998874
No 12
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.66 E-value=3.9e-16 Score=144.70 Aligned_cols=108 Identities=29% Similarity=0.513 Sum_probs=80.0
Q ss_pred HHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC
Q psy7829 123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY 202 (511)
Q Consensus 123 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 202 (511)
+++.+. ..+|.+|||+|||+|.++..+++..++.++|+++|+|+.|++.|++++...+ ..+|+++++|+++.+
T Consensus 39 ~~~~~~--~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~-----~~~i~~v~~da~~lp 111 (233)
T PF01209_consen 39 LIKLLG--LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG-----LQNIEFVQGDAEDLP 111 (233)
T ss_dssp HHHHHT----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-------SEEEEE-BTTB--
T ss_pred HHhccC--CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC-----CCCeeEEEcCHHHhc
Confidence 445444 6789999999999999999999998888999999999999999999998753 458999999999877
Q ss_pred CCCCCccEEEecCCCCchH------HHHHhhcccCcEEEEE
Q psy7829 203 LPEAPYDVIYYGGCVSEVP------SRVLNQLKKGGRILAP 237 (511)
Q Consensus 203 ~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~l~~~ 237 (511)
.++++||+|++...++.++ ++++++|||||++++.
T Consensus 112 ~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 112 FPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEe
Confidence 7779999999998887654 7899999999999874
No 13
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.65 E-value=5.9e-15 Score=127.61 Aligned_cols=131 Identities=22% Similarity=0.449 Sum_probs=105.7
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCH---HHHHHHHhhccccccccccc
Q psy7829 352 NGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMM---DIAIESIANISTNHIDLIAN 428 (511)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~---~~~~~~~~~~~~~~v~~i~~ 428 (511)
.+|.|++++ +++.++++.+.+++++||||||||..++.+| +.+|+++|++||.++ +.+++|.++++.+|++++.+
T Consensus 14 ~~p~TK~EI-Ral~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g 91 (187)
T COG2242 14 GGPMTKEEI-RALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEG 91 (187)
T ss_pred CCCCcHHHH-HHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEec
Confidence 467899999 7888889999999999999999999999999 666999999999985 45556888889999999999
Q ss_pred cccccccccchhhhhcccCCcEEEEEcCCccHH---HHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCC
Q psy7829 429 ETIEIIPHILDLCYLNLHRGAKVLEIGSGSGYL---ATLMAHLVGPTGHVTGL---EHMMDIAIESIANIST 494 (511)
Q Consensus 429 d~~~~l~~~~d~i~~~l~~~~~vLD~~~g~g~~---~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~ 494 (511)
++.+.++.. ...+.+ -+|-| |.+ .......|+|+|++++. .+++..+-+..++.|.
T Consensus 92 ~Ap~~L~~~--------~~~dai-FIGGg-~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 92 DAPEALPDL--------PSPDAI-FIGGG-GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGG 153 (187)
T ss_pred cchHhhcCC--------CCCCEE-EECCC-CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCC
Confidence 998887743 111222 25554 554 44566788999999987 7888888888888876
No 14
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.64 E-value=1.9e-15 Score=124.76 Aligned_cols=100 Identities=31% Similarity=0.537 Sum_probs=82.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEE
Q psy7829 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIY 212 (511)
Q Consensus 133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~ 212 (511)
|+.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.|++++...+ ..++++++++|+.......+.||+|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~i~~~~~d~~~~~~~~~~~D~v~ 75 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEG----LSDRITFVQGDAEFDPDFLEPFDLVI 75 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTT----TTTTEEEEESCCHGGTTTSSCEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcC----CCCCeEEEECccccCcccCCCCCEEE
Confidence 57899999999999999999975 67899999999999999999995543 46799999999921222346799999
Q ss_pred ecC-CCC---c------hHHHHHhhcccCcEEEEE
Q psy7829 213 YGG-CVS---E------VPSRVLNQLKKGGRILAP 237 (511)
Q Consensus 213 ~~~-~~~---~------~~~~~~~~LkpgG~l~~~ 237 (511)
+.. ..+ . +.+++.+.|+|||++++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 76 CSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp ECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 988 332 1 257899999999999985
No 15
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.63 E-value=6.8e-15 Score=127.22 Aligned_cols=123 Identities=30% Similarity=0.436 Sum_probs=106.4
Q ss_pred CCcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCC
Q psy7829 110 YAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG 189 (511)
Q Consensus 110 ~~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~ 189 (511)
.+..++.+.+.+..+..|. ++++++++|||||||.+++.++ ..+|.++|+++|.++++++..++|+++. +.+
T Consensus 13 ~~~p~TK~EIRal~ls~L~--~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~f-----g~~ 84 (187)
T COG2242 13 EGGPMTKEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARF-----GVD 84 (187)
T ss_pred CCCCCcHHHHHHHHHHhhC--CCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHh-----CCC
Confidence 3555888889998999987 8999999999999999999999 4569999999999999999999999995 588
Q ss_pred CeEEEEccCCCCCCCCCCccEEEecCCC--CchHHHHHhhcccCcEEEEEEcc
Q psy7829 190 RVRIVEADAREGYLPEAPYDVIYYGGCV--SEVPSRVLNQLKKGGRILAPIGP 240 (511)
Q Consensus 190 ~v~~~~~d~~~~~~~~~~fD~I~~~~~~--~~~~~~~~~~LkpgG~l~~~~~~ 240 (511)
|++++.+|+.+.+....+||.||+...- +.+++.+...|||||++++..-.
T Consensus 85 n~~vv~g~Ap~~L~~~~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 85 NLEVVEGDAPEALPDLPSPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred cEEEEeccchHhhcCCCCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 9999999998765544479999998773 35678999999999999996543
No 16
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.4e-15 Score=134.63 Aligned_cols=143 Identities=24% Similarity=0.414 Sum_probs=111.3
Q ss_pred cccccccccchhhHHHHhh-----hhhccCCCcccCccccCCCCCCCCCceeeeccccccccCCCCCCCCCCHHHHHHHH
Q psy7829 290 ENLFTLMDKDSDELFSERV-----WELKQDPLYTTEKWIPQPPGYTTPGEITTRDKYGRLVHGSAPDNGPSSERSIAHIL 364 (511)
Q Consensus 290 ~~~~~~~~~~~r~~~~~~~-----~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (511)
...++++...+|+.|.++. |.....|+ .+++++.+| ..+++|+
T Consensus 18 ~~v~~A~~~vPRe~FVp~~~~~~AY~d~~lpi-~~gqtis~P-------------------------------~~vA~m~ 65 (209)
T COG2518 18 ERVLKAFLAVPRELFVPAAYKHLAYEDRALPI-GCGQTISAP-------------------------------HMVARML 65 (209)
T ss_pred HHHHHHHHhCCHHhccCchhhcccccCCcccC-CCCceecCc-------------------------------HHHHHHH
Confidence 4556667778888888644 44444444 345555544 7899999
Q ss_pred HHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhh---ccccccccccccccccccccchhh
Q psy7829 365 DLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIAN---ISTNHIDLIANETIEIIPHILDLC 441 (511)
Q Consensus 365 ~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~---~~~~~v~~i~~d~~~~l~~~~d~i 441 (511)
+. +.++++++||||||||||.+..+|+.. ++|+++|+..+.++.|++| ++..||.++++|+....+..
T Consensus 66 ~~--L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~---- 136 (209)
T COG2518 66 QL--LELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE---- 136 (209)
T ss_pred HH--hCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC----
Confidence 98 999999999999999999999999998 6999999998887777655 55778999999987776642
Q ss_pred hhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 442 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 442 ~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
.|-++|+ +.|+--.+...+.+.|+++|+++..
T Consensus 137 ----aPyD~I~-Vtaaa~~vP~~Ll~QL~~gGrlv~P 168 (209)
T COG2518 137 ----APYDRII-VTAAAPEVPEALLDQLKPGGRLVIP 168 (209)
T ss_pred ----CCcCEEE-EeeccCCCCHHHHHhcccCCEEEEE
Confidence 2334455 6777777788999999999998876
No 17
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.58 E-value=2.7e-14 Score=137.01 Aligned_cols=145 Identities=17% Similarity=0.227 Sum_probs=112.3
Q ss_pred CCCCccCCCCCCCcccccCCCcccchhHHHHHHHHHHhhcC--CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCH
Q psy7829 91 DRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHL--VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIP 168 (511)
Q Consensus 91 ~r~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~--~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~ 168 (511)
|-........|.+..+.++.++.+++|.+...+...+...+ .++.+|||+|||+|.++..+++.. +..+|+++|+|+
T Consensus 77 Pl~yi~g~~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~ 155 (284)
T TIGR03533 77 PVAYLTNEAWFAGLEFYVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISP 155 (284)
T ss_pred cHHHHcCCCeecCcEEEECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCH
Confidence 33344445677788889998999988877666655554222 345799999999999999999986 678999999999
Q ss_pred HHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCC------------------------------
Q psy7829 169 ELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVS------------------------------ 218 (511)
Q Consensus 169 ~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~------------------------------ 218 (511)
.+++.|++|+..++ ...+++++++|+.+..+ .++||+|++++++.
T Consensus 156 ~al~~A~~n~~~~~----~~~~i~~~~~D~~~~~~-~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~ 230 (284)
T TIGR03533 156 DALAVAEINIERHG----LEDRVTLIQSDLFAALP-GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLV 230 (284)
T ss_pred HHHHHHHHHHHHcC----CCCcEEEEECchhhccC-CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHH
Confidence 99999999998865 23579999999876443 35799999997651
Q ss_pred -chHHHHHhhcccCcEEEEEEccC
Q psy7829 219 -EVPSRVLNQLKKGGRILAPIGPM 241 (511)
Q Consensus 219 -~~~~~~~~~LkpgG~l~~~~~~~ 241 (511)
.+...+.+.|+|||++++.++..
T Consensus 231 ~~il~~a~~~L~~gG~l~~e~g~~ 254 (284)
T TIGR03533 231 RRILAEAADHLNENGVLVVEVGNS 254 (284)
T ss_pred HHHHHHHHHhcCCCCEEEEEECcC
Confidence 12356678999999999988753
No 18
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.58 E-value=3.4e-14 Score=134.94 Aligned_cols=107 Identities=25% Similarity=0.310 Sum_probs=88.6
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV 210 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 210 (511)
+.++.+|||+|||+|.++..+++..++.++|+|+|+|++|++.|+++...... ...++++++++|+.+.+.++++||+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~--~~~~~i~~~~~d~~~lp~~~~sfD~ 148 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK--SCYKNIEWIEGDATDLPFDDCYFDA 148 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh--ccCCCeEEEEcccccCCCCCCCEeE
Confidence 67889999999999999999999876778999999999999999887542100 0245899999999876556688999
Q ss_pred EEecCCCCch------HHHHHhhcccCcEEEEEEc
Q psy7829 211 IYYGGCVSEV------PSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 211 I~~~~~~~~~------~~~~~~~LkpgG~l~~~~~ 239 (511)
|+++..++++ ++++.+.|||||++++...
T Consensus 149 V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 149 ITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred EEEecccccCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 9998888765 4789999999999988644
No 19
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.56 E-value=8.1e-14 Score=124.54 Aligned_cols=103 Identities=31% Similarity=0.353 Sum_probs=87.4
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV 210 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 210 (511)
++++.+|||+|||+|..+..+++.. +.++|+++|+++.+++.|+++++.++ .++++++++|+.+... .++||+
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~-----l~~i~~~~~d~~~~~~-~~~fDl 115 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELG-----LKNVTVVHGRAEEFGQ-EEKFDV 115 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcC-----CCCEEEEeccHhhCCC-CCCccE
Confidence 4568999999999999999999875 67899999999999999999998864 4569999999877444 578999
Q ss_pred EEecCCC--CchHHHHHhhcccCcEEEEEEcc
Q psy7829 211 IYYGGCV--SEVPSRVLNQLKKGGRILAPIGP 240 (511)
Q Consensus 211 I~~~~~~--~~~~~~~~~~LkpgG~l~~~~~~ 240 (511)
|+++... +.+.+.+.+.|||||++++..+.
T Consensus 116 V~~~~~~~~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 116 VTSRAVASLSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred EEEccccCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 9997542 35568899999999999997654
No 20
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.55 E-value=8.6e-14 Score=136.87 Aligned_cols=141 Identities=18% Similarity=0.209 Sum_probs=109.7
Q ss_pred ccCCCCCCCcccccCCCcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHH
Q psy7829 95 FANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEAS 174 (511)
Q Consensus 95 ~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a 174 (511)
......|.+..+.+..+..+++|.....+...+. .+.++.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.|
T Consensus 214 IlG~~~F~G~~f~V~p~vLIPRpeTE~LVe~aL~-~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~A 291 (423)
T PRK14966 214 ILGVREFYGRRFAVNPNVLIPRPETEHLVEAVLA-RLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETA 291 (423)
T ss_pred EeeeeeecCcEEEeCCCccCCCccHHHHHHHhhh-ccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHH
Confidence 3344578888899998999998876665444443 34567799999999999999999875 678999999999999999
Q ss_pred HHHHhccCCCcCCCCCeEEEEccCCCCC-CCCCCccEEEecCCCC-------------------------------chHH
Q psy7829 175 LRNISKGNKDLLDSGRVRIVEADAREGY-LPEAPYDVIYYGGCVS-------------------------------EVPS 222 (511)
Q Consensus 175 ~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~I~~~~~~~-------------------------------~~~~ 222 (511)
++|++.++ .+++++++|+.+.. +..++||+|++|+|.- .+.+
T Consensus 292 reNa~~~g------~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~ 365 (423)
T PRK14966 292 RKNAADLG------ARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQ 365 (423)
T ss_pred HHHHHHcC------CcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHH
Confidence 99998753 27999999986532 2235799999998761 1124
Q ss_pred HHHhhcccCcEEEEEEccCCC
Q psy7829 223 RVLNQLKKGGRILAPIGPMDD 243 (511)
Q Consensus 223 ~~~~~LkpgG~l~~~~~~~~~ 243 (511)
.+.+.|+|||.+++.++..+.
T Consensus 366 ~a~~~LkpgG~lilEiG~~Q~ 386 (423)
T PRK14966 366 GAPDRLAEGGFLLLEHGFDQG 386 (423)
T ss_pred HHHHhcCCCcEEEEEECccHH
Confidence 556789999999998876544
No 21
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.55 E-value=3.9e-14 Score=123.64 Aligned_cols=102 Identities=25% Similarity=0.432 Sum_probs=85.9
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCC--CCCcc
Q psy7829 132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLP--EAPYD 209 (511)
Q Consensus 132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD 209 (511)
+++.+|||+|||+|.++..+++...+.++++|+|+|+.+++.|+++++..+ .+|++|+++|+.+ ++. .+.||
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~-----~~ni~~~~~d~~~-l~~~~~~~~D 75 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG-----LDNIEFIQGDIED-LPQELEEKFD 75 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT-----STTEEEEESBTTC-GCGCSSTTEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc-----ccccceEEeehhc-cccccCCCee
Confidence 467899999999999999999766678999999999999999999998864 5599999999987 432 17899
Q ss_pred EEEecCCCCch------HHHHHhhcccCcEEEEEEc
Q psy7829 210 VIYYGGCVSEV------PSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 210 ~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~~ 239 (511)
+|++..+++++ .+++.+.|+++|.+++...
T Consensus 76 ~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 76 IIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp EEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 99999887554 4789999999999988544
No 22
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.55 E-value=6.7e-13 Score=142.85 Aligned_cols=120 Identities=20% Similarity=0.131 Sum_probs=85.5
Q ss_pred chhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhC--------------------------------------
Q psy7829 115 NAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVG-------------------------------------- 156 (511)
Q Consensus 115 ~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~-------------------------------------- 156 (511)
..+.+.+.++.+.. ...++..++|.+||+|.+.+..|....
T Consensus 173 l~etlAaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~ 251 (702)
T PRK11783 173 LKENLAAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG 251 (702)
T ss_pred CcHHHHHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence 45566666665443 225688999999999999988775310
Q ss_pred ---CCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCC--CCCccEEEecCCCCch----------H
Q psy7829 157 ---PTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLP--EAPYDVIYYGGCVSEV----------P 221 (511)
Q Consensus 157 ---~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~I~~~~~~~~~----------~ 221 (511)
...+++|+|+++.+++.|++|+..+| ..+.+++.++|+.+.... .++||+|++|+|+-.- .
T Consensus 252 ~~~~~~~i~G~Did~~av~~A~~N~~~~g----~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY 327 (702)
T PRK11783 252 LAELPSKFYGSDIDPRVIQAARKNARRAG----VAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALY 327 (702)
T ss_pred ccccCceEEEEECCHHHHHHHHHHHHHcC----CCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHH
Confidence 12369999999999999999999986 345699999998764322 2579999999987321 1
Q ss_pred HHH---HhhcccCcEEEEEEc
Q psy7829 222 SRV---LNQLKKGGRILAPIG 239 (511)
Q Consensus 222 ~~~---~~~LkpgG~l~~~~~ 239 (511)
..+ .+...+|+.+++..+
T Consensus 328 ~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 328 SQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHHHHHhCCCCeEEEEeC
Confidence 222 333348988877544
No 23
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.55 E-value=1.6e-13 Score=115.38 Aligned_cols=115 Identities=30% Similarity=0.411 Sum_probs=92.5
Q ss_pred hhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEE
Q psy7829 116 APNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE 195 (511)
Q Consensus 116 ~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~ 195 (511)
+..+...+++.+. +.++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.++++++..+ .++++++.
T Consensus 4 ~~~~~~~~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~ 75 (124)
T TIGR02469 4 KREVRALTLSKLR--LRPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFG-----VSNIVIVE 75 (124)
T ss_pred hHHHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhC-----CCceEEEe
Confidence 3445666666665 6678899999999999999999987 55899999999999999999988753 45789999
Q ss_pred ccCCCCC-CCCCCccEEEecCCCCc---hHHHHHhhcccCcEEEEEE
Q psy7829 196 ADAREGY-LPEAPYDVIYYGGCVSE---VPSRVLNQLKKGGRILAPI 238 (511)
Q Consensus 196 ~d~~~~~-~~~~~fD~I~~~~~~~~---~~~~~~~~LkpgG~l~~~~ 238 (511)
+|+.... ....+||.|++...... +.+.+.+.|||||.+++.+
T Consensus 76 ~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 76 GDAPEALEDSLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ccccccChhhcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence 9876422 22368999999875544 5689999999999999865
No 24
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.54 E-value=8.4e-14 Score=134.80 Aligned_cols=141 Identities=18% Similarity=0.229 Sum_probs=109.7
Q ss_pred ccCCCCCCCcccccCCCcccchhHHHHHHHHHHhhcCC--CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHH
Q psy7829 95 FANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLV--DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIE 172 (511)
Q Consensus 95 ~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~--~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~ 172 (511)
......|.+..+.+..++.+++|.+...+...+...++ +..+|||+|||+|.++..+++.. +..+|+++|+|+.+++
T Consensus 93 i~g~~~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~ 171 (307)
T PRK11805 93 LTNEAWFCGLEFYVDERVLVPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALA 171 (307)
T ss_pred HcCcceEcCcEEEECCCCcCCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHH
Confidence 33445777888889888989888776665555432222 23689999999999999999986 7789999999999999
Q ss_pred HHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCC-------------------------------chH
Q psy7829 173 ASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVS-------------------------------EVP 221 (511)
Q Consensus 173 ~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~-------------------------------~~~ 221 (511)
.|++|++.++ ...+++++++|+.+..+ .++||+|++++|+- .+.
T Consensus 172 ~A~~n~~~~~----l~~~i~~~~~D~~~~l~-~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~ 246 (307)
T PRK11805 172 VAEINIERHG----LEDRVTLIESDLFAALP-GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRIL 246 (307)
T ss_pred HHHHHHHHhC----CCCcEEEEECchhhhCC-CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHH
Confidence 9999998865 23579999999876443 35799999987651 123
Q ss_pred HHHHhhcccCcEEEEEEccC
Q psy7829 222 SRVLNQLKKGGRILAPIGPM 241 (511)
Q Consensus 222 ~~~~~~LkpgG~l~~~~~~~ 241 (511)
+.+.+.|+|||.+++.++..
T Consensus 247 ~~a~~~L~pgG~l~~E~g~~ 266 (307)
T PRK11805 247 AEAPDYLTEDGVLVVEVGNS 266 (307)
T ss_pred HHHHHhcCCCCEEEEEECcC
Confidence 66778999999999988754
No 25
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.54 E-value=8e-14 Score=123.74 Aligned_cols=112 Identities=29% Similarity=0.389 Sum_probs=89.3
Q ss_pred HHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC
Q psy7829 122 DAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG 201 (511)
Q Consensus 122 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 201 (511)
.+++.+.. .++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.+++|++.++ ..+++++..|..+.
T Consensus 22 lL~~~l~~--~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~-----~~~v~~~~~d~~~~ 93 (170)
T PF05175_consen 22 LLLDNLPK--HKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNG-----LENVEVVQSDLFEA 93 (170)
T ss_dssp HHHHHHHH--HTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTT-----CTTEEEEESSTTTT
T ss_pred HHHHHHhh--ccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcC-----cccccccccccccc
Confidence 45555652 278899999999999999999986 77789999999999999999999975 33499999999875
Q ss_pred CCCCCCccEEEecCCCCc-----------hHHHHHhhcccCcEEEEEEccCC
Q psy7829 202 YLPEAPYDVIYYGGCVSE-----------VPSRVLNQLKKGGRILAPIGPMD 242 (511)
Q Consensus 202 ~~~~~~fD~I~~~~~~~~-----------~~~~~~~~LkpgG~l~~~~~~~~ 242 (511)
.. .++||+|++++|++. +.+...+.|||||.+++......
T Consensus 94 ~~-~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~ 144 (170)
T PF05175_consen 94 LP-DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHL 144 (170)
T ss_dssp CC-TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred cc-ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCC
Confidence 54 588999999998742 23678899999999988665443
No 26
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.54 E-value=1.4e-13 Score=129.05 Aligned_cols=111 Identities=21% Similarity=0.391 Sum_probs=91.7
Q ss_pred HHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC
Q psy7829 121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE 200 (511)
Q Consensus 121 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 200 (511)
..++..+. ++++.+|||+|||+|..+..+++..++.++|+++|+++.+++.+++++... ..++++++++|+..
T Consensus 35 ~~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~v~~~~~d~~~ 107 (231)
T TIGR02752 35 KDTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA-----GLHNVELVHGNAME 107 (231)
T ss_pred HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc-----CCCceEEEEechhc
Confidence 34555554 678899999999999999999998777789999999999999999998764 34689999999876
Q ss_pred CCCCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEEE
Q psy7829 201 GYLPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAPI 238 (511)
Q Consensus 201 ~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~ 238 (511)
...+.++||+|+++..++++ ++++.+.|+|||.+++..
T Consensus 108 ~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 108 LPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred CCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence 44455789999998777654 477899999999998743
No 27
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.3e-13 Score=131.36 Aligned_cols=141 Identities=21% Similarity=0.296 Sum_probs=111.1
Q ss_pred ccCCCCCCCcccccCCCcccchhHHHHHHHHHHhhcCCCCC-EEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHH
Q psy7829 95 FANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGA-KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEA 173 (511)
Q Consensus 95 ~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~-~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~ 173 (511)
......|....+.+..++.+++|.+...+...+. ...... +|||+|||||.+++.++... +..+|+++|+|+.+++.
T Consensus 72 i~g~~~f~gl~~~v~~~vliPr~dTe~Lve~~l~-~~~~~~~~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~ 149 (280)
T COG2890 72 ILGSAEFGGLRFKVDEGVLIPRPDTELLVEAALA-LLLQLDKRILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALAL 149 (280)
T ss_pred hhccCeecceeeeeCCCceecCCchHHHHHHHHH-hhhhcCCcEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHH
Confidence 3344578888889999999999987776555331 122222 79999999999999999997 77899999999999999
Q ss_pred HHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCC-------------------------------CchHH
Q psy7829 174 SLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCV-------------------------------SEVPS 222 (511)
Q Consensus 174 a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~-------------------------------~~~~~ 222 (511)
|++|+..++ ..++.++.+|+..... ++||+|++|+|+ ..+..
T Consensus 150 A~~Na~~~~-----l~~~~~~~~dlf~~~~--~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~ 222 (280)
T COG2890 150 ARENAERNG-----LVRVLVVQSDLFEPLR--GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILG 222 (280)
T ss_pred HHHHHHHcC-----CccEEEEeeecccccC--CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHH
Confidence 999999975 2677888888876554 489999999887 11225
Q ss_pred HHHhhcccCcEEEEEEccCCCc
Q psy7829 223 RVLNQLKKGGRILAPIGPMDDF 244 (511)
Q Consensus 223 ~~~~~LkpgG~l~~~~~~~~~~ 244 (511)
.+.+.|+|||.+++.++..+..
T Consensus 223 ~a~~~l~~~g~l~le~g~~q~~ 244 (280)
T COG2890 223 EAPDILKPGGVLILEIGLTQGE 244 (280)
T ss_pred hhHHHcCCCcEEEEEECCCcHH
Confidence 6788999999999998866543
No 28
>PLN02244 tocopherol O-methyltransferase
Probab=99.53 E-value=1.3e-13 Score=136.00 Aligned_cols=102 Identities=18% Similarity=0.213 Sum_probs=87.0
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEE
Q psy7829 132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVI 211 (511)
Q Consensus 132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 211 (511)
.++.+|||||||+|.++..+++.+ ..+|+|+|+|+.+++.++++....+ ..++++|+++|+.+.+.++++||+|
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g----~~~~v~~~~~D~~~~~~~~~~FD~V 190 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQG----LSDKVSFQVADALNQPFEDGQFDLV 190 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEEcCcccCCCCCCCccEE
Confidence 578899999999999999999986 4589999999999999999987754 3457999999998755556899999
Q ss_pred EecCCCCch------HHHHHhhcccCcEEEEEEc
Q psy7829 212 YYGGCVSEV------PSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 212 ~~~~~~~~~------~~~~~~~LkpgG~l~~~~~ 239 (511)
++...++++ .+++.++|||||++++...
T Consensus 191 ~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 191 WSMESGEHMPDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred EECCchhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 998887665 3789999999999998643
No 29
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.52 E-value=6.8e-14 Score=130.26 Aligned_cols=136 Identities=24% Similarity=0.202 Sum_probs=104.3
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCC
Q psy7829 120 IADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAR 199 (511)
Q Consensus 120 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 199 (511)
...+++.+. +++|++|||||||.|.+++.+|+.+ +.+|+|+++|+++.+.+++++...| ...+++++..|..
T Consensus 61 ~~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~g----l~~~v~v~l~d~r 132 (283)
T COG2230 61 LDLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARG----LEDNVEVRLQDYR 132 (283)
T ss_pred HHHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcC----CCcccEEEecccc
Confidence 334555554 8999999999999999999999997 5789999999999999999999876 3458999999987
Q ss_pred CCCCCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEEEccCCCcceEEEEEEecCCeEEEEeecceEEEec
Q psy7829 200 EGYLPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAI 271 (511)
Q Consensus 200 ~~~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 271 (511)
+.. +.||.|++-.+++++ .+.+.+.|+|||++++-.-........ ....|....+|+-.+.|-
T Consensus 133 d~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~------~~~~~i~~yiFPgG~lPs 203 (283)
T COG2230 133 DFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR------RFPDFIDKYIFPGGELPS 203 (283)
T ss_pred ccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc------cchHHHHHhCCCCCcCCC
Confidence 633 449999999988765 378999999999999853322221111 234466666777766663
Q ss_pred c
Q psy7829 272 M 272 (511)
Q Consensus 272 ~ 272 (511)
.
T Consensus 204 ~ 204 (283)
T COG2230 204 I 204 (283)
T ss_pred H
Confidence 3
No 30
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.52 E-value=3.3e-13 Score=122.04 Aligned_cols=118 Identities=23% Similarity=0.339 Sum_probs=95.7
Q ss_pred CcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCC
Q psy7829 111 AGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGR 190 (511)
Q Consensus 111 ~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~ 190 (511)
...++.+.+.+.+++.+. +.++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.+++++..++ ..+
T Consensus 11 ~~~~~~~~~r~~~~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~-----~~~ 82 (187)
T PRK08287 11 KVPMTKEEVRALALSKLE--LHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFG-----CGN 82 (187)
T ss_pred CCCCchHHHHHHHHHhcC--CCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhC-----CCC
Confidence 445666667777777775 6788999999999999999999986 77899999999999999999998753 357
Q ss_pred eEEEEccCCCCCCCCCCccEEEecCCCCc---hHHHHHhhcccCcEEEEEE
Q psy7829 191 VRIVEADAREGYLPEAPYDVIYYGGCVSE---VPSRVLNQLKKGGRILAPI 238 (511)
Q Consensus 191 v~~~~~d~~~~~~~~~~fD~I~~~~~~~~---~~~~~~~~LkpgG~l~~~~ 238 (511)
++++.+|..... .++||+|+++..... +.+.+.+.|+|||++++..
T Consensus 83 i~~~~~d~~~~~--~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 83 IDIIPGEAPIEL--PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred eEEEecCchhhc--CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEE
Confidence 999999875432 257999999765433 4578899999999998854
No 31
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.52 E-value=1.9e-13 Score=131.73 Aligned_cols=141 Identities=19% Similarity=0.236 Sum_probs=107.7
Q ss_pred CCCCCCCcccccCCCcccchhHHHHHHHHHHhhc--CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHH
Q psy7829 97 NEEPYQDVSASLGYAGVMNAPNQIADAAENLKLH--LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEAS 174 (511)
Q Consensus 97 ~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a 174 (511)
....|.+..+.+..+..+++|.....+...+... ..+..+|||+|||+|.++..++... +..+|+++|+|+.+++.|
T Consensus 76 g~~~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a 154 (284)
T TIGR00536 76 GSKEFYGLEFFVNEHVLIPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVA 154 (284)
T ss_pred CcceEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHH
Confidence 3456778888888888888886655544443321 1223689999999999999999986 678999999999999999
Q ss_pred HHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCC-------------------------------chHHH
Q psy7829 175 LRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVS-------------------------------EVPSR 223 (511)
Q Consensus 175 ~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~-------------------------------~~~~~ 223 (511)
++|+..++ ...+++++++|+.+... ..+||+|++++++- .+...
T Consensus 155 ~~n~~~~~----~~~~v~~~~~d~~~~~~-~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~ 229 (284)
T TIGR00536 155 EENAEKNQ----LEHRVEFIQSNLFEPLA-GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIEL 229 (284)
T ss_pred HHHHHHcC----CCCcEEEEECchhccCc-CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHH
Confidence 99998864 23459999999876443 24799999986651 12256
Q ss_pred HHhhcccCcEEEEEEccCCC
Q psy7829 224 VLNQLKKGGRILAPIGPMDD 243 (511)
Q Consensus 224 ~~~~LkpgG~l~~~~~~~~~ 243 (511)
+.+.|+|||.+++.++..+.
T Consensus 230 a~~~L~~gG~l~~e~g~~q~ 249 (284)
T TIGR00536 230 APDYLKPNGFLVCEIGNWQQ 249 (284)
T ss_pred HHHhccCCCEEEEEECccHH
Confidence 77899999999999886554
No 32
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.50 E-value=1.8e-13 Score=122.26 Aligned_cols=101 Identities=30% Similarity=0.335 Sum_probs=84.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEE
Q psy7829 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIY 212 (511)
Q Consensus 133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~ 212 (511)
++.+|||+|||+|.++..++... +.++|+++|+++.+++.+++++++++ .++++++++|+.+. ...++||+|+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~-----~~~i~~i~~d~~~~-~~~~~fD~I~ 114 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELG-----LNNVEIVNGRAEDF-QHEEQFDVIT 114 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhC-----CCCeEEEecchhhc-cccCCccEEE
Confidence 48899999999999999998765 67899999999999999999988754 45799999998763 3347899999
Q ss_pred ecCCCCc---hHHHHHhhcccCcEEEEEEccC
Q psy7829 213 YGGCVSE---VPSRVLNQLKKGGRILAPIGPM 241 (511)
Q Consensus 213 ~~~~~~~---~~~~~~~~LkpgG~l~~~~~~~ 241 (511)
++. ++. +.+.+.+.|+|||.+++..+..
T Consensus 115 s~~-~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 145 (181)
T TIGR00138 115 SRA-LASLNVLLELTLNLLKVGGYFLAYKGKK 145 (181)
T ss_pred ehh-hhCHHHHHHHHHHhcCCCCEEEEEcCCC
Confidence 986 443 3467899999999999876543
No 33
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.50 E-value=1.4e-13 Score=130.90 Aligned_cols=169 Identities=17% Similarity=0.210 Sum_probs=113.4
Q ss_pred cccCCCccHHHHHHHHHHcCCCCCHHHHHHHHhCCCC--CccCCCCCCCcccccCCCcccchhHHHHHHHHHHhhcCCCC
Q psy7829 57 HFKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRG--NFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDG 134 (511)
Q Consensus 57 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~a~~~~~r~--~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 134 (511)
++|+...+..++++.|...|+...+.-......+... .......|..+.+.++....+ +. ...+. ++++
T Consensus 2 RvN~lk~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~----~~---~~~l~--~~~g 72 (264)
T TIGR00446 2 RVNTLKISVADLLQRLENRGVTLIPWCEEGFFEVNESPLPIGSTPEYLSGLYYIQEASSM----IP---PLALE--PDPP 72 (264)
T ss_pred eecCCCCCHHHHHHHHHhCCCceeecCCCceEEEeCCCCCcccChhHhCCeEEEECHHHH----HH---HHHhC--CCCc
Confidence 4567778888999999888752111000000001100 111222344443333321111 11 22333 6789
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEec
Q psy7829 135 AKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYG 214 (511)
Q Consensus 135 ~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~ 214 (511)
.+|||+|||+|..+..+++..++.+.|+++|+++.+++.+++++++++ ..++.++..|+.......+.||+|+++
T Consensus 73 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g-----~~~v~~~~~D~~~~~~~~~~fD~Vl~D 147 (264)
T TIGR00446 73 ERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG-----VLNVAVTNFDGRVFGAAVPKFDAILLD 147 (264)
T ss_pred CEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-----CCcEEEecCCHHHhhhhccCCCEEEEc
Confidence 999999999999999999988667899999999999999999999864 457999999986533333569999999
Q ss_pred CCCCc----------------------------hHHHHHhhcccCcEEEEEEc
Q psy7829 215 GCVSE----------------------------VPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 215 ~~~~~----------------------------~~~~~~~~LkpgG~l~~~~~ 239 (511)
.++.. +++.+.+.|||||+|+.+.-
T Consensus 148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 87631 34677889999999998643
No 34
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.50 E-value=2.9e-13 Score=123.43 Aligned_cols=120 Identities=31% Similarity=0.427 Sum_probs=95.8
Q ss_pred ccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeE
Q psy7829 113 VMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVR 192 (511)
Q Consensus 113 ~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~ 192 (511)
.++.+.+.+..+..+. +.++.+|||+|||+|.++..+++..++.++|+++|+++.+++.+++++..++ ..+++.
T Consensus 22 ~~t~~~~r~~~l~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g----~~~~v~ 95 (198)
T PRK00377 22 PMTKEEIRALALSKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG----VLNNIV 95 (198)
T ss_pred CCCHHHHHHHHHHHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC----CCCCeE
Confidence 4566666666666665 7789999999999999999999887677899999999999999999998864 246899
Q ss_pred EEEccCCCCCCC-CCCccEEEecCCC---CchHHHHHhhcccCcEEEEEE
Q psy7829 193 IVEADAREGYLP-EAPYDVIYYGGCV---SEVPSRVLNQLKKGGRILAPI 238 (511)
Q Consensus 193 ~~~~d~~~~~~~-~~~fD~I~~~~~~---~~~~~~~~~~LkpgG~l~~~~ 238 (511)
++.+|..+..+. .+.||+|+++... ..+.+.+.+.|||||++++..
T Consensus 96 ~~~~d~~~~l~~~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 96 LIKGEAPEILFTINEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred EEEechhhhHhhcCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEe
Confidence 999998653322 3679999996543 345678899999999998754
No 35
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.49 E-value=1.4e-13 Score=130.85 Aligned_cols=103 Identities=24% Similarity=0.355 Sum_probs=85.0
Q ss_pred HHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC
Q psy7829 121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE 200 (511)
Q Consensus 121 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 200 (511)
..+++.+. ..++.+|||+|||+|.++..+++.. +..+|+|+|+|+.|++.|+++ +++++++|+.+
T Consensus 19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~------------~~~~~~~d~~~ 83 (255)
T PRK14103 19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER------------GVDARTGDVRD 83 (255)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc------------CCcEEEcChhh
Confidence 34455554 5678999999999999999999986 678999999999999998753 47889999875
Q ss_pred CCCCCCCccEEEecCCCCchH------HHHHhhcccCcEEEEEEc
Q psy7829 201 GYLPEAPYDVIYYGGCVSEVP------SRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 201 ~~~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~l~~~~~ 239 (511)
.. ..++||+|+++.++++++ +++.+.|||||.+++.+.
T Consensus 84 ~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 84 WK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred CC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 43 457899999999887764 688999999999998654
No 36
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.49 E-value=7.1e-14 Score=121.81 Aligned_cols=98 Identities=27% Similarity=0.502 Sum_probs=86.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV 210 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 210 (511)
+.+..+|.|+|||+|..+..+++++ |.++++|+|.|++|++.|+++ .++++|..+|+.. +.+..+.|+
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~r----------lp~~~f~~aDl~~-w~p~~~~dl 95 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQR----------LPDATFEEADLRT-WKPEQPTDL 95 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHh----------CCCCceecccHhh-cCCCCccch
Confidence 5577899999999999999999998 899999999999999999776 3468999999876 555678999
Q ss_pred EEecCCCCchH------HHHHhhcccCcEEEEEEcc
Q psy7829 211 IYYGGCVSEVP------SRVLNQLKKGGRILAPIGP 240 (511)
Q Consensus 211 I~~~~~~~~~~------~~~~~~LkpgG~l~~~~~~ 240 (511)
+++|.++++++ .++...|.|||.|.+-+..
T Consensus 96 lfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPd 131 (257)
T COG4106 96 LFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPD 131 (257)
T ss_pred hhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCC
Confidence 99999998875 6889999999999986553
No 37
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.49 E-value=1.6e-13 Score=130.07 Aligned_cols=108 Identities=26% Similarity=0.282 Sum_probs=83.4
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829 119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA 198 (511)
Q Consensus 119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 198 (511)
....+++.+. +++|.+|||||||.|.++..+++.+ +++|+|+++|++..+.+++++.+.| ..+++++...|.
T Consensus 50 k~~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~g----l~~~v~v~~~D~ 121 (273)
T PF02353_consen 50 KLDLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAG----LEDRVEVRLQDY 121 (273)
T ss_dssp HHHHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCST----SSSTEEEEES-G
T ss_pred HHHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEEeec
Confidence 4445555554 8899999999999999999999997 4689999999999999999999876 456899999998
Q ss_pred CCCCCCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEE
Q psy7829 199 REGYLPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAP 237 (511)
Q Consensus 199 ~~~~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~ 237 (511)
.+.. .+||.|++..+++++ .+++.++|||||++++-
T Consensus 122 ~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 122 RDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp GG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred cccC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 7532 489999999888766 37899999999999874
No 38
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.49 E-value=1.4e-13 Score=139.58 Aligned_cols=180 Identities=18% Similarity=0.214 Sum_probs=123.2
Q ss_pred ccCCCCCCCCcccCCCccHHHHHHHHHHcCCCCCH--HHHHHHHhCC-CCCccCCCCCCCcccccCCCcccchhHHHHHH
Q psy7829 47 WVIPPPDNLNHFKNEGTCQTDLVNHLRDIGKIRTE--RVAQAFYKVD-RGNFANEEPYQDVSASLGYAGVMNAPNQIADA 123 (511)
Q Consensus 47 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~a~~~~~-r~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~ 123 (511)
+.+.+++..+++|+...+..++.+.|...|+...+ ....++.... .........|..+.+.++... ...+
T Consensus 157 ~~~~~~~~~~RvN~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~-------s~~~ 229 (431)
T PRK14903 157 WNQEPLPTMLRVNSLAITREEVIKILAEEGTEAVPGKHSPFSLIVRKLGVNMNDSRVIKDGLATVQGES-------SQIV 229 (431)
T ss_pred HhcCCCCeeEEeeCCcCCHHHHHHHHHHCCCeeEECCCCCceEEEcCCCCCcccChHHHCCeEEEECHH-------HHHH
Confidence 34566777889999999999999999887752111 0001110000 011111223444444433221 1122
Q ss_pred HHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC-
Q psy7829 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY- 202 (511)
Q Consensus 124 ~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~- 202 (511)
...+. +.+|.+|||+|||+|..+.+++...++.++|+++|+++.+++.+++++++.| ..+++++++|+....
T Consensus 230 ~~~l~--~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g-----~~~v~~~~~Da~~l~~ 302 (431)
T PRK14903 230 PLLME--LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK-----LSSIEIKIADAERLTE 302 (431)
T ss_pred HHHhC--CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCeEEEEECchhhhhh
Confidence 23343 6789999999999999999999998777899999999999999999999864 457999999987532
Q ss_pred CCCCCccEEEecCCCC----------------------------chHHHHHhhcccCcEEEEEEcc
Q psy7829 203 LPEAPYDVIYYGGCVS----------------------------EVPSRVLNQLKKGGRILAPIGP 240 (511)
Q Consensus 203 ~~~~~fD~I~~~~~~~----------------------------~~~~~~~~~LkpgG~l~~~~~~ 240 (511)
...++||.|++++++. .++.++.+.|||||.+++++-+
T Consensus 303 ~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 303 YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 1246799999998882 1235778999999999987543
No 39
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=4.2e-13 Score=121.39 Aligned_cols=122 Identities=26% Similarity=0.328 Sum_probs=105.3
Q ss_pred CcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCC
Q psy7829 111 AGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGR 190 (511)
Q Consensus 111 ~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~ 190 (511)
+.++..|.-.+.++..+. +.+|.+|+|.|+|||.++..|++.+++.++|+++|+.++..+.|++|++..+ ..++
T Consensus 74 ~tQiIyPKD~~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~----l~d~ 147 (256)
T COG2519 74 RTQIIYPKDAGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG----LGDR 147 (256)
T ss_pred CCceecCCCHHHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc----cccc
Confidence 445556666777788776 8999999999999999999999999999999999999999999999999975 3455
Q ss_pred eEEEEccCCCCCCCCCCccEEEecCCCCc-hHHHHHhhcccCcEEEEEEc
Q psy7829 191 VRIVEADAREGYLPEAPYDVIYYGGCVSE-VPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 191 v~~~~~d~~~~~~~~~~fD~I~~~~~~~~-~~~~~~~~LkpgG~l~~~~~ 239 (511)
+++..+|..+.... ..||+|+.+.+-+| ..+.+.+.|||||.+++.+.
T Consensus 148 v~~~~~Dv~~~~~~-~~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 148 VTLKLGDVREGIDE-EDVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred eEEEeccccccccc-cccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcC
Confidence 99999999876655 48999999987765 66899999999999998654
No 40
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.48 E-value=1.8e-13 Score=109.08 Aligned_cols=89 Identities=24% Similarity=0.487 Sum_probs=74.7
Q ss_pred EEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCC
Q psy7829 138 LDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCV 217 (511)
Q Consensus 138 LDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~ 217 (511)
||+|||+|..+..+++. +..+|+++|+++++++.++++.... ++.+.++|....+.++++||+|++...+
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~--------~~~~~~~d~~~l~~~~~sfD~v~~~~~~ 70 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNE--------GVSFRQGDAEDLPFPDNSFDVVFSNSVL 70 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTS--------TEEEEESBTTSSSS-TT-EEEEEEESHG
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhccccc--------CchheeehHHhCccccccccccccccce
Confidence 89999999999999998 4678999999999999999987653 4679999998876677999999999888
Q ss_pred Cch------HHHHHhhcccCcEEEE
Q psy7829 218 SEV------PSRVLNQLKKGGRILA 236 (511)
Q Consensus 218 ~~~------~~~~~~~LkpgG~l~~ 236 (511)
+++ .+++.++|||||++++
T Consensus 71 ~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 71 HHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred eeccCHHHHHHHHHHHcCcCeEEeC
Confidence 765 3789999999999986
No 41
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.47 E-value=4.7e-13 Score=126.40 Aligned_cols=108 Identities=19% Similarity=0.301 Sum_probs=86.7
Q ss_pred HHHHhhcCCCCCEEEEEcCCccHHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC
Q psy7829 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMV-GPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY 202 (511)
Q Consensus 124 ~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 202 (511)
...+...+.++.+|||+|||+|..+..+++.+ .+.++++++|+|+.|++.|++++...+ ...+++++++|+.+..
T Consensus 47 ~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~----~~~~v~~~~~d~~~~~ 122 (247)
T PRK15451 47 GMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK----APTPVDVIEGDIRDIA 122 (247)
T ss_pred HHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC----CCCCeEEEeCChhhCC
Confidence 33333345688999999999999999988853 367899999999999999999998754 3457999999987643
Q ss_pred CCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEE
Q psy7829 203 LPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAP 237 (511)
Q Consensus 203 ~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~ 237 (511)
. ..+|+|+++.+++++ .+++.+.|||||.+++.
T Consensus 123 ~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 123 I--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred C--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3 458999988776543 47899999999999985
No 42
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.47 E-value=4.3e-13 Score=136.94 Aligned_cols=178 Identities=19% Similarity=0.233 Sum_probs=122.0
Q ss_pred ccCCCCCCCCcccCCCccHHHHHHHHHHcCCCCCH--HHHHHHHhCC-CCCccCCCCCCCcccccCCCcccchhHHHHHH
Q psy7829 47 WVIPPPDNLNHFKNEGTCQTDLVNHLRDIGKIRTE--RVAQAFYKVD-RGNFANEEPYQDVSASLGYAGVMNAPNQIADA 123 (511)
Q Consensus 47 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~a~~~~~-r~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~ 123 (511)
+.+.++...+++|+...+...+.+.|...|+...+ ....++.... ...+...+.|..+.+.++ ......+
T Consensus 172 ~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~q-------d~~s~l~ 244 (434)
T PRK14901 172 WFNQPPSLDLRINPLRTSLEEVQAALAEAGITATPIPGLPQGLRLTGNPGSIRQLPGYEEGWWTVQ-------DRSAQLV 244 (434)
T ss_pred HhCCCCCeEEEECCCCCCHHHHHHHHHHCCCceEECCCCCCeEEecCCCCccccChHHhCCeEEEE-------CHHHHHH
Confidence 45666777889999888998999999888752111 0011111100 001111123333333222 1122223
Q ss_pred HHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC-
Q psy7829 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY- 202 (511)
Q Consensus 124 ~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~- 202 (511)
...+. ..+|.+|||+|||+|..+..+++..++.++|+++|+++.+++.+++++++.| ..+++++++|+....
T Consensus 245 ~~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g-----~~~v~~~~~D~~~~~~ 317 (434)
T PRK14901 245 APLLD--PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG-----LKSIKILAADSRNLLE 317 (434)
T ss_pred HHHhC--CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC-----CCeEEEEeCChhhccc
Confidence 34444 6789999999999999999999988667899999999999999999999864 557999999987543
Q ss_pred ---CCCCCccEEEecCCCC----------------------------chHHHHHhhcccCcEEEEEE
Q psy7829 203 ---LPEAPYDVIYYGGCVS----------------------------EVPSRVLNQLKKGGRILAPI 238 (511)
Q Consensus 203 ---~~~~~fD~I~~~~~~~----------------------------~~~~~~~~~LkpgG~l~~~~ 238 (511)
...++||.|+++.+|. .++.++.+.|||||+|+.++
T Consensus 318 ~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 318 LKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred ccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 2236899999988762 22467889999999998764
No 43
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.46 E-value=1.2e-12 Score=121.06 Aligned_cols=124 Identities=27% Similarity=0.347 Sum_probs=98.0
Q ss_pred CCcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCC
Q psy7829 110 YAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG 189 (511)
Q Consensus 110 ~~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~ 189 (511)
...++..|.-...++..+. +.||.+|||.|+|||.++..|++.++|.++|+.+|+.++..+.|++|++.+| ..+
T Consensus 19 rrtQIiYpkD~~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g----l~~ 92 (247)
T PF08704_consen 19 RRTQIIYPKDISYILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG----LDD 92 (247)
T ss_dssp SSS----HHHHHHHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT----CCT
T ss_pred CCcceeeCchHHHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC----CCC
Confidence 4566777878888888887 9999999999999999999999999999999999999999999999999986 466
Q ss_pred CeEEEEccCC-CCCCC--CCCccEEEecCCCCc-hHHHHHhhc-ccCcEEEEEEc
Q psy7829 190 RVRIVEADAR-EGYLP--EAPYDVIYYGGCVSE-VPSRVLNQL-KKGGRILAPIG 239 (511)
Q Consensus 190 ~v~~~~~d~~-~~~~~--~~~fD~I~~~~~~~~-~~~~~~~~L-kpgG~l~~~~~ 239 (511)
++++.+.|+. +++.. ...+|.|+.+.+-+| ....+.+.| ||||++++-..
T Consensus 93 ~v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP 147 (247)
T PF08704_consen 93 NVTVHHRDVCEEGFDEELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFSP 147 (247)
T ss_dssp TEEEEES-GGCG--STT-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred CceeEecceecccccccccCcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEECC
Confidence 8999999996 34421 367999999998877 568999999 89999998554
No 44
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.46 E-value=7.6e-14 Score=125.18 Aligned_cols=98 Identities=20% Similarity=0.302 Sum_probs=82.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEE
Q psy7829 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIY 212 (511)
Q Consensus 133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~ 212 (511)
+|.+|||+|||-|.++..+|+.. ..|+|+|+++.+++.|+.++.+.+. ++++.+...++.....++||+|+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv------~i~y~~~~~edl~~~~~~FDvV~ 129 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGV------NIDYRQATVEDLASAGGQFDVVT 129 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccc------cccchhhhHHHHHhcCCCccEEE
Confidence 79999999999999999999974 5799999999999999999888652 36677776665444448999999
Q ss_pred ecCCCCchH------HHHHhhcccCcEEEEEEc
Q psy7829 213 YGGCVSEVP------SRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 213 ~~~~~~~~~------~~~~~~LkpgG~l~~~~~ 239 (511)
|..+++|++ +.+.+.+||||.++++.-
T Consensus 130 cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 130 CMEVLEHVPDPESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred EhhHHHccCCHHHHHHHHHHHcCCCcEEEEecc
Confidence 999998875 679999999999999754
No 45
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.46 E-value=5.2e-13 Score=136.03 Aligned_cols=176 Identities=18% Similarity=0.210 Sum_probs=118.0
Q ss_pred ccCCCCCCCCcccCCCccHHHHHHHHHHcCCCCCH-HH-HHHHHhCCCC-CccCCCCCCCcccccCCCcccchhHHHHHH
Q psy7829 47 WVIPPPDNLNHFKNEGTCQTDLVNHLRDIGKIRTE-RV-AQAFYKVDRG-NFANEEPYQDVSASLGYAGVMNAPNQIADA 123 (511)
Q Consensus 47 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~-~~a~~~~~r~-~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~ 123 (511)
+...+++..+++|+...+..++.+.|...|+-..+ .+ ..++. ++.. .+.....|.++.+.++ ......+
T Consensus 165 ~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~iQ-------d~~s~~~ 236 (427)
T PRK10901 165 ANNQRPPMWLRVNRRHHSRDAYLALLAEAGIEAFPHAVGPDAIR-LETPVPVHQLPGFAEGWVSVQ-------DAAAQLA 236 (427)
T ss_pred HcCCCCCeEEEEcCCCCCHHHHHHHHHhCCCceeecCCCCCeEE-ECCCCCcccCchhhCceEEEE-------CHHHHHH
Confidence 45556667889999888888888888877642111 00 00110 1110 0111112333333332 2122233
Q ss_pred HHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC-
Q psy7829 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY- 202 (511)
Q Consensus 124 ~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~- 202 (511)
...+. ..++.+|||+|||+|..+..+++.. +.++|+++|+++.+++.++++++++| . +++++++|+....
T Consensus 237 ~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~~g-----~-~~~~~~~D~~~~~~ 307 (427)
T PRK10901 237 ATLLA--PQNGERVLDACAAPGGKTAHILELA-PQAQVVALDIDAQRLERVRENLQRLG-----L-KATVIVGDARDPAQ 307 (427)
T ss_pred HHHcC--CCCCCEEEEeCCCCChHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcC-----C-CeEEEEcCcccchh
Confidence 34444 6789999999999999999999987 44799999999999999999999864 2 4789999987532
Q ss_pred -CCCCCccEEEecCCCC----------------------------chHHHHHhhcccCcEEEEEEc
Q psy7829 203 -LPEAPYDVIYYGGCVS----------------------------EVPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 203 -~~~~~fD~I~~~~~~~----------------------------~~~~~~~~~LkpgG~l~~~~~ 239 (511)
...++||.|++++++. .++..+.+.|||||++++++.
T Consensus 308 ~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 308 WWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred hcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 2246799999988763 134677889999999998653
No 46
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.44 E-value=1.8e-12 Score=122.14 Aligned_cols=139 Identities=14% Similarity=0.126 Sum_probs=100.7
Q ss_pred CccCCCCCCCcccccCCCcccchhHHHHHHHHHHhhcC---CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHH
Q psy7829 94 NFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHL---VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPEL 170 (511)
Q Consensus 94 ~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~---~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~ 170 (511)
.......|.+..+.+..+..++++.....+-..+. .+ .++.+|||+|||+|.++..+++.. +..+|+++|+|+.+
T Consensus 45 yi~g~~~f~g~~~~v~~~vf~pr~~Te~Lv~~~l~-~~~~~~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~a 122 (251)
T TIGR03704 45 HVLGWAEFCGLRIAVDPGVFVPRRRTEFLVDEAAA-LARPRSGTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAA 122 (251)
T ss_pred HhcccCeEcCeEEEECCCCcCCCccHHHHHHHHHH-hhcccCCCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHH
Confidence 33444577777788888877766544333222222 12 234589999999999999999886 56789999999999
Q ss_pred HHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCC--CCCccEEEecCCCC------------------------------
Q psy7829 171 IEASLRNISKGNKDLLDSGRVRIVEADAREGYLP--EAPYDVIYYGGCVS------------------------------ 218 (511)
Q Consensus 171 ~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~I~~~~~~~------------------------------ 218 (511)
++.|++|++.++ ++++++|+.+.... .++||+|++|+++.
T Consensus 123 l~~A~~N~~~~~--------~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~ 194 (251)
T TIGR03704 123 VRCARRNLADAG--------GTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDV 194 (251)
T ss_pred HHHHHHHHHHcC--------CEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHH
Confidence 999999998753 47899998753321 25799999998762
Q ss_pred --chHHHHHhhcccCcEEEEEEccCC
Q psy7829 219 --EVPSRVLNQLKKGGRILAPIGPMD 242 (511)
Q Consensus 219 --~~~~~~~~~LkpgG~l~~~~~~~~ 242 (511)
.+...+.+.|||||++++.++..+
T Consensus 195 ~~~i~~~a~~~L~~gG~l~l~~~~~~ 220 (251)
T TIGR03704 195 LRRVAAGAPDWLAPGGHLLVETSERQ 220 (251)
T ss_pred HHHHHHHHHHhcCCCCEEEEEECcch
Confidence 122456689999999999877544
No 47
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.44 E-value=9.4e-13 Score=126.59 Aligned_cols=102 Identities=34% Similarity=0.499 Sum_probs=87.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV 210 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 210 (511)
++++.+|||+|||+|..+..+++..++.++|+++|+++.+++.|+++....+ .++++++.+|+.....++++||+
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g-----~~~v~~~~~d~~~l~~~~~~fD~ 149 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG-----YTNVEFRLGEIEALPVADNSVDV 149 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC-----CCCEEEEEcchhhCCCCCCceeE
Confidence 6789999999999999998888887777899999999999999999988753 46899999998764444578999
Q ss_pred EEecCCCCc------hHHHHHhhcccCcEEEEE
Q psy7829 211 IYYGGCVSE------VPSRVLNQLKKGGRILAP 237 (511)
Q Consensus 211 I~~~~~~~~------~~~~~~~~LkpgG~l~~~ 237 (511)
|+++..+++ +.+++.++|||||++++.
T Consensus 150 Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 150 IISNCVINLSPDKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred EEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEE
Confidence 999877654 347899999999999985
No 48
>KOG2904|consensus
Probab=99.44 E-value=2.2e-12 Score=116.51 Aligned_cols=149 Identities=17% Similarity=0.194 Sum_probs=113.5
Q ss_pred HHhCCCCCccCCCCCCCcccccCCCcccchhHHHHHH---HHHHhhc-CCCCCEEEEEcCCccHHHHHHHHHhCCCceEE
Q psy7829 87 FYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADA---AENLKLH-LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVI 162 (511)
Q Consensus 87 ~~~~~r~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~---~~~l~~~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~ 162 (511)
+...|-+......+|.+-.+....++.|++|.+...+ ++.+.+. ...+..+||+|||+|.++..++..+ ++++|+
T Consensus 98 ~~r~PlQYIlg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L-~~~~v~ 176 (328)
T KOG2904|consen 98 YKRMPLQYILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGL-PQCTVT 176 (328)
T ss_pred HhcCChhheeccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcC-CCceEE
Confidence 3445555666677899999988999999999876654 4444321 1245689999999999999999998 589999
Q ss_pred EEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCC----CCC-CCCCCccEEEecCCC--------------------
Q psy7829 163 GVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAR----EGY-LPEAPYDVIYYGGCV-------------------- 217 (511)
Q Consensus 163 ~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~----~~~-~~~~~fD~I~~~~~~-------------------- 217 (511)
++|.|+.++..|.+|+.+++ ...++.+++.+.+ ... ...+++|++++|+++
T Consensus 177 AiD~S~~Ai~La~eN~qr~~----l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~l 252 (328)
T KOG2904|consen 177 AIDVSKAAIKLAKENAQRLK----LSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKL 252 (328)
T ss_pred EEeccHHHHHHHHHHHHHHh----hcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchh
Confidence 99999999999999999975 4567887765544 222 234889999999887
Q ss_pred ------------CchHHHHHhhcccCcEEEEEEcc
Q psy7829 218 ------------SEVPSRVLNQLKKGGRILAPIGP 240 (511)
Q Consensus 218 ------------~~~~~~~~~~LkpgG~l~~~~~~ 240 (511)
.++..-+.+.|+|||.+.+.+..
T Consensus 253 ALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~ 287 (328)
T KOG2904|consen 253 ALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVE 287 (328)
T ss_pred hhccccchhHHHHHHHHhhHhhcccCCeEEEEecc
Confidence 01114567899999999998763
No 49
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.43 E-value=9.1e-13 Score=134.30 Aligned_cols=179 Identities=13% Similarity=0.112 Sum_probs=118.3
Q ss_pred ccCCCCCCCCcccCCCccHHHHHHHHHHcCCCCCH--HHHHHHHhCCCCCccCCCCCCCcccccCCCcccchhHHHHHHH
Q psy7829 47 WVIPPPDNLNHFKNEGTCQTDLVNHLRDIGKIRTE--RVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAA 124 (511)
Q Consensus 47 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~a~~~~~r~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~ 124 (511)
+...++...+++|+...+...+.+.|...|+...+ -...++.......+.....|.++.+.++.. -...+.
T Consensus 159 ~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~-------~s~~~~ 231 (426)
T TIGR00563 159 ANNQRPPMWLRINRTKHSRDEWLALLAEAGMKGFPHDLAPDAVRLETPAAVHALPGFEEGWVTVQDA-------SAQWVA 231 (426)
T ss_pred HhCCCCCeEEEEcCCcCCHHHHHHHHHhcCCceeeCCCCCCeEEECCCCCcccCchhhCCeEEEECH-------HHHHHH
Confidence 34555667788898888888888888887753211 001111111111111222344444444322 222334
Q ss_pred HHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-
Q psy7829 125 ENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL- 203 (511)
Q Consensus 125 ~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~- 203 (511)
..+. ..++.+|||+|||+|+.+..+++..+ .++|+++|+++.+++.+++|+++.|. ..++.+..+|......
T Consensus 232 ~~L~--~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~----~~~v~~~~~d~~~~~~~ 304 (426)
T TIGR00563 232 TWLA--PQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGL----TIKAETKDGDGRGPSQW 304 (426)
T ss_pred HHhC--CCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCC----CeEEEEecccccccccc
Confidence 4454 67899999999999999999999874 78999999999999999999998752 1234456677654222
Q ss_pred -CCCCccEEEecCCCC----------------------------chHHHHHhhcccCcEEEEEEc
Q psy7829 204 -PEAPYDVIYYGGCVS----------------------------EVPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 204 -~~~~fD~I~~~~~~~----------------------------~~~~~~~~~LkpgG~l~~~~~ 239 (511)
..++||.|++++++. .++.++.+.|||||.+++++-
T Consensus 305 ~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 305 AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 346799999987652 134677889999999998643
No 50
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.43 E-value=1e-12 Score=124.93 Aligned_cols=108 Identities=21% Similarity=0.314 Sum_probs=86.5
Q ss_pred HHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC
Q psy7829 121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE 200 (511)
Q Consensus 121 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 200 (511)
..++..+. +.++.+|||||||+|..+..+++.. .++|+++|+|+.+++.|+++... .+++.+.++|+..
T Consensus 42 ~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~-------~~~i~~~~~D~~~ 110 (263)
T PTZ00098 42 TKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD-------KNKIEFEANDILK 110 (263)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc-------CCceEEEECCccc
Confidence 44555554 7789999999999999999998765 45899999999999999988653 2479999999876
Q ss_pred CCCCCCCccEEEecCCCCc--------hHHHHHhhcccCcEEEEEEc
Q psy7829 201 GYLPEAPYDVIYYGGCVSE--------VPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 201 ~~~~~~~fD~I~~~~~~~~--------~~~~~~~~LkpgG~l~~~~~ 239 (511)
...++++||+|++...+.+ +.+++.++|||||.+++...
T Consensus 111 ~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 111 KDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 5445578999999665433 34788999999999998543
No 51
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.43 E-value=1e-12 Score=125.41 Aligned_cols=105 Identities=22% Similarity=0.397 Sum_probs=85.8
Q ss_pred HHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC
Q psy7829 121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE 200 (511)
Q Consensus 121 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 200 (511)
..++..+. +.++.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.|+++. +++.++.+|+..
T Consensus 21 ~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~----------~~~~~~~~d~~~ 87 (258)
T PRK01683 21 RDLLARVP--LENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL----------PDCQFVEADIAS 87 (258)
T ss_pred HHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC----------CCCeEEECchhc
Confidence 34445443 5678999999999999999999986 6789999999999999998764 258899999875
Q ss_pred CCCCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEEEc
Q psy7829 201 GYLPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 201 ~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~~ 239 (511)
.. ...+||+|+++.+++++ .+++.+.|||||.+++.+.
T Consensus 88 ~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 88 WQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred cC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 43 34689999999988765 3789999999999998643
No 52
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.43 E-value=5e-13 Score=121.30 Aligned_cols=114 Identities=28% Similarity=0.503 Sum_probs=87.6
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccc
Q psy7829 354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANET 430 (511)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~ 430 (511)
.+.|..++++++. +.+++|++||||||||||.|..+|+.+++.++|+++|++++.++.+++++. ..|+.++.+|.
T Consensus 55 is~P~~~a~~l~~--L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg 132 (209)
T PF01135_consen 55 ISAPSMVARMLEA--LDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDG 132 (209)
T ss_dssp E--HHHHHHHHHH--TTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-G
T ss_pred chHHHHHHHHHHH--HhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcch
Confidence 3578999999998 889999999999999999999999999888899999999998888777765 67888999887
Q ss_pred cccccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 431 IEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 431 ~~~l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
....+.. .+-++|+ ++++.-.+...+.+.|++||+++..
T Consensus 133 ~~g~~~~--------apfD~I~-v~~a~~~ip~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 133 SEGWPEE--------APFDRII-VTAAVPEIPEALLEQLKPGGRLVAP 171 (209)
T ss_dssp GGTTGGG---------SEEEEE-ESSBBSS--HHHHHTEEEEEEEEEE
T ss_pred hhccccC--------CCcCEEE-EeeccchHHHHHHHhcCCCcEEEEE
Confidence 6544321 2334455 7777778888899999999999875
No 53
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.43 E-value=1.6e-12 Score=118.32 Aligned_cols=104 Identities=23% Similarity=0.210 Sum_probs=82.3
Q ss_pred HHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC
Q psy7829 123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY 202 (511)
Q Consensus 123 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 202 (511)
+++.+. ..++.+|||+|||+|..+..+++.. .+|+++|+|+.+++.++++....+ ..++++.+.|+....
T Consensus 22 l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~~~-----~~~v~~~~~d~~~~~ 91 (197)
T PRK11207 22 VLEAVK--VVKPGKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAAEN-----LDNLHTAVVDLNNLT 91 (197)
T ss_pred HHHhcc--cCCCCcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHcC-----CCcceEEecChhhCC
Confidence 344443 4467899999999999999999863 479999999999999999887753 456899999987543
Q ss_pred CCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEE
Q psy7829 203 LPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAP 237 (511)
Q Consensus 203 ~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~ 237 (511)
. .++||+|++..+++++ .+++.++|||||.+++.
T Consensus 92 ~-~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 92 F-DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred c-CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 3 3679999998876543 36889999999997653
No 54
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.43 E-value=9e-13 Score=135.20 Aligned_cols=177 Identities=21% Similarity=0.260 Sum_probs=119.0
Q ss_pred ccCCCCCCCCcccCCCccHHHHHHHHHHcCCCCCHH-H-HHHHHhCCCCCccCCCCCCCcccccCCCcccchhHHHHHHH
Q psy7829 47 WVIPPPDNLNHFKNEGTCQTDLVNHLRDIGKIRTER-V-AQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAA 124 (511)
Q Consensus 47 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~-~~a~~~~~r~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~ 124 (511)
+...++...++.|+...+...+.+.|...|+...+. + ..++ .++...+.....|.++.+.++ ......+.
T Consensus 172 ~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~~q-------d~~s~lv~ 243 (444)
T PRK14902 172 SLNEPPKASIRVNTLKISVEELIEKLEEEGYEVEESLLSPEAL-VIEKGNIAGTDLFKDGLITIQ-------DESSMLVA 243 (444)
T ss_pred HcCCCCCeEEEEcCCCCCHHHHHHHHHHcCceeEEcCCCCCeE-EEeCCCcccChHHhCceEEEE-------ChHHHHHH
Confidence 345556667788887777888888887776421110 0 0010 111111222223333333332 22222333
Q ss_pred HHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-
Q psy7829 125 ENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL- 203 (511)
Q Consensus 125 ~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~- 203 (511)
..+. +.++.+|||+|||+|..+..+++..++.++|+++|+++.+++.+++|++++| ..+++++++|+.....
T Consensus 244 ~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g-----~~~v~~~~~D~~~~~~~ 316 (444)
T PRK14902 244 PALD--PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG-----LTNIETKALDARKVHEK 316 (444)
T ss_pred HHhC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEeCCcccccch
Confidence 4444 6788999999999999999999987667899999999999999999999864 4569999999875421
Q ss_pred CCCCccEEEecCCCC----------------------------chHHHHHhhcccCcEEEEEE
Q psy7829 204 PEAPYDVIYYGGCVS----------------------------EVPSRVLNQLKKGGRILAPI 238 (511)
Q Consensus 204 ~~~~fD~I~~~~~~~----------------------------~~~~~~~~~LkpgG~l~~~~ 238 (511)
..++||+|++++++. .++..+.+.|||||.++.+.
T Consensus 317 ~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 317 FAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred hcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 126799999998752 13467789999999999653
No 55
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.43 E-value=1.6e-12 Score=128.14 Aligned_cols=111 Identities=17% Similarity=0.213 Sum_probs=87.9
Q ss_pred HHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC
Q psy7829 123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY 202 (511)
Q Consensus 123 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 202 (511)
+++.+. ...+.+|||+|||+|.++..+++.. |..+|+++|+|+.+++.|++|++.++.. ...+++++..|.....
T Consensus 220 lL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~--~~~~v~~~~~D~l~~~ 294 (378)
T PRK15001 220 FMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPE--ALDRCEFMINNALSGV 294 (378)
T ss_pred HHHhCC--cccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcc--cCceEEEEEccccccC
Confidence 455553 2335699999999999999999986 7889999999999999999999876421 1247899999987544
Q ss_pred CCCCCccEEEecCCCCc-----------hHHHHHhhcccCcEEEEEEc
Q psy7829 203 LPEAPYDVIYYGGCVSE-----------VPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 203 ~~~~~fD~I~~~~~~~~-----------~~~~~~~~LkpgG~l~~~~~ 239 (511)
. ..+||+|+++++++. +...+.+.|+|||.+++...
T Consensus 295 ~-~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 295 E-PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred C-CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 3 358999999998853 23678899999999999643
No 56
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.42 E-value=3.3e-12 Score=121.50 Aligned_cols=134 Identities=22% Similarity=0.304 Sum_probs=97.3
Q ss_pred CCCCcccccCCCcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHh
Q psy7829 100 PYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNIS 179 (511)
Q Consensus 100 ~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~ 179 (511)
.|.+..+.+.....+++|.....+...+......+.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++.
T Consensus 54 ~~~~~~~~~~~~~~~p~~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~ 132 (251)
T TIGR03534 54 EFYGLDFKVSPGVLIPRPDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAA 132 (251)
T ss_pred eEeceEEEECCCcccCCCChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHH
Confidence 34444555555555555543333222222112345689999999999999999986 67799999999999999999998
Q ss_pred ccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCC--------------------------------chHHHHHhh
Q psy7829 180 KGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVS--------------------------------EVPSRVLNQ 227 (511)
Q Consensus 180 ~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~--------------------------------~~~~~~~~~ 227 (511)
..+ .++++++++|+.+.. +.++||+|++++++. .+.+.+.+.
T Consensus 133 ~~~-----~~~~~~~~~d~~~~~-~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~ 206 (251)
T TIGR03534 133 RLG-----LDNVTFLQSDWFEPL-PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRL 206 (251)
T ss_pred HcC-----CCeEEEEECchhccC-cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHh
Confidence 754 457999999987644 347899999987653 123577889
Q ss_pred cccCcEEEEEEcc
Q psy7829 228 LKKGGRILAPIGP 240 (511)
Q Consensus 228 LkpgG~l~~~~~~ 240 (511)
|+|||.+++.++.
T Consensus 207 L~~gG~~~~~~~~ 219 (251)
T TIGR03534 207 LKPGGWLLLEIGY 219 (251)
T ss_pred cccCCEEEEEECc
Confidence 9999999997653
No 57
>PRK04266 fibrillarin; Provisional
Probab=99.42 E-value=3.3e-12 Score=117.83 Aligned_cols=115 Identities=27% Similarity=0.306 Sum_probs=87.9
Q ss_pred hHHHHHHHHHH-hhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEE
Q psy7829 117 PNQIADAAENL-KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE 195 (511)
Q Consensus 117 p~~~~~~~~~l-~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~ 195 (511)
+...+.++..+ .-.++++.+|||+|||+|.++..+++.++ .++|+++|+++.|++.+.+++.. .+|+.++.
T Consensus 55 ~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~-------~~nv~~i~ 126 (226)
T PRK04266 55 SKLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEE-------RKNIIPIL 126 (226)
T ss_pred cchHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhh-------cCCcEEEE
Confidence 33445555433 11367999999999999999999999884 67899999999999988877654 24799999
Q ss_pred ccCCCCC---CCCCCccEEEecCCCCc----hHHHHHhhcccCcEEEEEEc
Q psy7829 196 ADAREGY---LPEAPYDVIYYGGCVSE----VPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 196 ~d~~~~~---~~~~~fD~I~~~~~~~~----~~~~~~~~LkpgG~l~~~~~ 239 (511)
+|+.... ....+||+|+++...++ +++++.+.|||||.+++.+.
T Consensus 127 ~D~~~~~~~~~l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 127 ADARKPERYAHVVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred CCCCCcchhhhccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9986421 11256999998765432 35789999999999999654
No 58
>KOG1540|consensus
Probab=99.41 E-value=2.1e-12 Score=115.60 Aligned_cols=111 Identities=24% Similarity=0.277 Sum_probs=90.1
Q ss_pred HHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCC-----ceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc
Q psy7829 123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPT-----GKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD 197 (511)
Q Consensus 123 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~-----~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 197 (511)
.+..|. ..++.++||++||||.++..+.+..... ++|+.+|++++|+..++++..+.+. ....++.++++|
T Consensus 92 ~v~~L~--p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l--~~~~~~~w~~~d 167 (296)
T KOG1540|consen 92 FVSKLG--PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPL--KASSRVEWVEGD 167 (296)
T ss_pred hhhccC--CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCC--CcCCceEEEeCC
Confidence 344454 5678999999999999999999988432 8999999999999999999876441 112349999999
Q ss_pred CCCCCCCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEE
Q psy7829 198 AREGYLPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAP 237 (511)
Q Consensus 198 ~~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~ 237 (511)
+++.+.++.+||...+...++.+ +++++++|||||++.+-
T Consensus 168 AE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cL 213 (296)
T KOG1540|consen 168 AEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCL 213 (296)
T ss_pred cccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 99887888999999888776543 48899999999999863
No 59
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.41 E-value=7.2e-13 Score=128.36 Aligned_cols=101 Identities=15% Similarity=0.191 Sum_probs=83.4
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEE
Q psy7829 132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVI 211 (511)
Q Consensus 132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 211 (511)
.++.+|||||||+|.++..+++. ..+|+|+|+++.+++.|++++...+ ...+++++++|+.+.....++||+|
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~----~~~~i~~~~~dae~l~~~~~~FD~V 202 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDP----VTSTIEYLCTTAEKLADEGRKFDAV 202 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcC----cccceeEEecCHHHhhhccCCCCEE
Confidence 35779999999999999999874 3579999999999999998876532 2357999999987644445789999
Q ss_pred EecCCCCch------HHHHHhhcccCcEEEEEEc
Q psy7829 212 YYGGCVSEV------PSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 212 ~~~~~~~~~------~~~~~~~LkpgG~l~~~~~ 239 (511)
++..+++++ ++++.++|||||.+++...
T Consensus 203 i~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 203 LSLEVIEHVANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred EEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 999888765 3789999999999999754
No 60
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.41 E-value=4.2e-12 Score=130.11 Aligned_cols=175 Identities=19% Similarity=0.169 Sum_probs=118.1
Q ss_pred cCCCCCCCCcccCCCccHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCC-CCCCCcccccCCCcccchhHHHHHHHHH
Q psy7829 48 VIPPPDNLNHFKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANE-EPYQDVSASLGYAGVMNAPNQIADAAEN 126 (511)
Q Consensus 48 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~a~~~~~r~~~~~~-~~y~~~~~~~~~~~~~~~p~~~~~~~~~ 126 (511)
...++...+++|+...+...+.+.|...++...+.-...+. +... +... ..|..+.+. .+..........
T Consensus 175 ~~~~~~~~~Rvn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~G~~~-------vqd~~s~l~~~~ 245 (445)
T PRK14904 175 NNQAPLFGFRINRLKTTPEKFLAAPADASVTFEKSGLPNFF-LSKD-FSLFEPFLKLGLVS-------VQNPTQALACLL 245 (445)
T ss_pred hCCCCCceeEeCCCCCCHHHHHHHHHhCCCceEEcCcceEE-Eecc-ccccChHHhCcEEE-------EeCHHHHHHHHh
Confidence 44455667888888888888888888766421110000000 0000 1110 122222222 222222233344
Q ss_pred HhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCC
Q psy7829 127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEA 206 (511)
Q Consensus 127 l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 206 (511)
+. ..++.+|||+|||+|..+..+++..+..++|+++|+++.+++.+++++++.| ..+++++++|+.... +.+
T Consensus 246 l~--~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g-----~~~v~~~~~Da~~~~-~~~ 317 (445)
T PRK14904 246 LN--PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG-----ITIIETIEGDARSFS-PEE 317 (445)
T ss_pred cC--CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC-----CCeEEEEeCcccccc-cCC
Confidence 43 6688999999999999999999987667799999999999999999999864 457999999987643 346
Q ss_pred CccEEEecCCCC----------------------------chHHHHHhhcccCcEEEEEEc
Q psy7829 207 PYDVIYYGGCVS----------------------------EVPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 207 ~fD~I~~~~~~~----------------------------~~~~~~~~~LkpgG~l~~~~~ 239 (511)
+||+|+++.++. .++.++.+.|||||++++++-
T Consensus 318 ~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 318 QPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred CCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 899999987661 134678899999999999754
No 61
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.41 E-value=3.1e-12 Score=123.39 Aligned_cols=138 Identities=24% Similarity=0.288 Sum_probs=103.2
Q ss_pred CCCCCCCcccccCCCcccchhHHHHHHHHHHhh-cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Q psy7829 97 NEEPYQDVSASLGYAGVMNAPNQIADAAENLKL-HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASL 175 (511)
Q Consensus 97 ~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~-~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~ 175 (511)
....|.+..+.++.+..+++|.....+-..+.. ...++.+|||+|||+|.++..++... +..+++++|+++.+++.|+
T Consensus 71 g~~~f~~~~~~~~~~~lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~ 149 (275)
T PRK09328 71 GEAEFWGLDFKVSPGVLIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVAR 149 (275)
T ss_pred eeceEcCcEEEECCCceeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHH
Confidence 334667777777777777777544333222211 24567899999999999999999987 6789999999999999999
Q ss_pred HHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCCc--------------------------------hHHH
Q psy7829 176 RNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSE--------------------------------VPSR 223 (511)
Q Consensus 176 ~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~--------------------------------~~~~ 223 (511)
+++.. . ...++.++.+|+..... .++||+|++++++.. +.++
T Consensus 150 ~n~~~-~----~~~~i~~~~~d~~~~~~-~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~ 223 (275)
T PRK09328 150 RNAKH-G----LGARVEFLQGDWFEPLP-GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQ 223 (275)
T ss_pred HHHHh-C----CCCcEEEEEccccCcCC-CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHH
Confidence 99872 1 34589999999876443 468999999876521 1245
Q ss_pred HHhhcccCcEEEEEEccC
Q psy7829 224 VLNQLKKGGRILAPIGPM 241 (511)
Q Consensus 224 ~~~~LkpgG~l~~~~~~~ 241 (511)
+.+.|+|||.+++.++..
T Consensus 224 ~~~~Lk~gG~l~~e~g~~ 241 (275)
T PRK09328 224 APRYLKPGGWLLLEIGYD 241 (275)
T ss_pred HHHhcccCCEEEEEECch
Confidence 568999999999977643
No 62
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.41 E-value=1.4e-12 Score=124.04 Aligned_cols=101 Identities=21% Similarity=0.274 Sum_probs=83.6
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC-CCCCCccE
Q psy7829 132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY-LPEAPYDV 210 (511)
Q Consensus 132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~ 210 (511)
.++.+|||+|||+|.++..+++.. .+|+++|+|+.+++.|++++...+ ..++++++++|+.+.. ...++||+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g----~~~~v~~~~~d~~~l~~~~~~~fD~ 115 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKG----VSDNMQFIHCAAQDIAQHLETPVDL 115 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcC----CccceEEEEcCHHHHhhhcCCCCCE
Confidence 456799999999999999999863 479999999999999999988764 3467999999986532 23478999
Q ss_pred EEecCCCCch------HHHHHhhcccCcEEEEEEc
Q psy7829 211 IYYGGCVSEV------PSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 211 I~~~~~~~~~------~~~~~~~LkpgG~l~~~~~ 239 (511)
|++..+++++ .+++.++|||||.+++.+.
T Consensus 116 V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 116 ILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred EEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEE
Confidence 9999887654 4789999999999988644
No 63
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.41 E-value=4.1e-12 Score=115.73 Aligned_cols=121 Identities=23% Similarity=0.311 Sum_probs=94.2
Q ss_pred CcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCC
Q psy7829 111 AGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGR 190 (511)
Q Consensus 111 ~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~ 190 (511)
+..++.+.+...++..+. ..++.+|||+|||+|.++..+++.. +.++|+++|+++.+++.++++++..+ ..+
T Consensus 20 ~~p~t~~~v~~~l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~-----~~~ 91 (196)
T PRK07402 20 GIPLTKREVRLLLISQLR--LEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFG-----VKN 91 (196)
T ss_pred CCCCCHHHHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhC-----CCC
Confidence 344566666666777775 6788999999999999999998775 66899999999999999999998754 457
Q ss_pred eEEEEccCCCCCCC-CCCccEEEecCCC--CchHHHHHhhcccCcEEEEEEc
Q psy7829 191 VRIVEADAREGYLP-EAPYDVIYYGGCV--SEVPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 191 v~~~~~d~~~~~~~-~~~fD~I~~~~~~--~~~~~~~~~~LkpgG~l~~~~~ 239 (511)
++++.+|+.+.+.. ...+|.+++.... ..+.+++.+.|+|||++++...
T Consensus 92 v~~~~~d~~~~~~~~~~~~d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 92 VEVIEGSAPECLAQLAPAPDRVCIEGGRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred eEEEECchHHHHhhCCCCCCEEEEECCcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 99999998642211 1346777775432 3566899999999999998754
No 64
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.41 E-value=3.8e-12 Score=119.87 Aligned_cols=101 Identities=18% Similarity=0.274 Sum_probs=83.9
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCcc
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMV-GPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYD 209 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 209 (511)
..++.+|||+|||+|..+..+++.+ .+.++++|+|+|+.|++.|++++...+ ...+++++++|+..... ..+|
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~----~~~~v~~~~~d~~~~~~--~~~d 124 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH----SEIPVEILCNDIRHVEI--KNAS 124 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC----CCCCeEEEECChhhCCC--CCCC
Confidence 4578899999999999999999875 367899999999999999999987643 23479999999976433 3589
Q ss_pred EEEecCCCCch--------HHHHHhhcccCcEEEEE
Q psy7829 210 VIYYGGCVSEV--------PSRVLNQLKKGGRILAP 237 (511)
Q Consensus 210 ~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~ 237 (511)
+|+++.+++++ .+++.+.|||||.+++.
T Consensus 125 ~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 125 MVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred EEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 99998877654 37889999999999985
No 65
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.40 E-value=1.5e-12 Score=119.08 Aligned_cols=107 Identities=27% Similarity=0.366 Sum_probs=88.7
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC--CCCCc
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL--PEAPY 208 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~f 208 (511)
.....+|||+|||+|.+++.+|++. +..+++++|+++.+.+.|+++++.++ ..+++++++.|+.+... ...+|
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~ln~----l~~ri~v~~~Di~~~~~~~~~~~f 116 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVALNP----LEERIQVIEADIKEFLKALVFASF 116 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHhCc----chhceeEehhhHHHhhhccccccc
Confidence 4457899999999999999999997 45899999999999999999999876 67899999999975332 23579
Q ss_pred cEEEecCCCCc------------------------hHHHHHhhcccCcEEEEEEccCC
Q psy7829 209 DVIYYGGCVSE------------------------VPSRVLNQLKKGGRILAPIGPMD 242 (511)
Q Consensus 209 D~I~~~~~~~~------------------------~~~~~~~~LkpgG~l~~~~~~~~ 242 (511)
|+|+||+|+.. +.+.+.+.|||||.+.+...+..
T Consensus 117 D~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~er 174 (248)
T COG4123 117 DLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPER 174 (248)
T ss_pred CEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHH
Confidence 99999998821 12567889999999999665443
No 66
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.40 E-value=1.8e-12 Score=118.30 Aligned_cols=102 Identities=25% Similarity=0.296 Sum_probs=83.6
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC-CCCC--CCCCCc
Q psy7829 132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA-REGY--LPEAPY 208 (511)
Q Consensus 132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-~~~~--~~~~~f 208 (511)
.++.+|||+|||+|..+..+++.. +..+|+++|+|+.+++.|++++..++ .+++.++++|+ .... ...++|
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~-----~~~v~~~~~d~~~~l~~~~~~~~~ 112 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEG-----LTNLRLLCGDAVEVLLDMFPDGSL 112 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcC-----CCCEEEEecCHHHHHHHHcCcccc
Confidence 367899999999999999999886 67789999999999999999988753 46899999998 4321 234789
Q ss_pred cEEEecCCCC--------------chHHHHHhhcccCcEEEEEEc
Q psy7829 209 DVIYYGGCVS--------------EVPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 209 D~I~~~~~~~--------------~~~~~~~~~LkpgG~l~~~~~ 239 (511)
|.|+++.+.+ .+.+++.+.|||||.+++...
T Consensus 113 D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 113 DRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred ceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 9999875432 246889999999999998654
No 67
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1.1e-12 Score=118.80 Aligned_cols=128 Identities=28% Similarity=0.392 Sum_probs=99.1
Q ss_pred CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc---cc-cccccccc
Q psy7829 355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST---NH-IDLIANET 430 (511)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~---~~-v~~i~~d~ 430 (511)
..|++++.++.. +.+.+|++|+|.|+|||.+|..||..++|.|+|+++|+.++.++.|.+|+.. .+ +++..+|.
T Consensus 78 IyPKD~~~I~~~--~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv 155 (256)
T COG2519 78 IYPKDAGYIVAR--LGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDV 155 (256)
T ss_pred ecCCCHHHHHHH--cCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccc
Confidence 355778888887 9999999999999999999999999999999999999999999999888763 33 77777775
Q ss_pred cccc-cccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEhHHH---HHHHHHHHHhcCC
Q psy7829 431 IEII-PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHM---MDIAIESIANIST 494 (511)
Q Consensus 431 ~~~l-~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~~~m---l~~a~~~~~~~~~ 494 (511)
.+.. +..+|.++.+++..|.++ ..+.+.|+|||.++.+... ++..-+.+++.|+
T Consensus 156 ~~~~~~~~vDav~LDmp~PW~~l----------e~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 156 REGIDEEDVDAVFLDLPDPWNVL----------EHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred cccccccccCEEEEcCCChHHHH----------HHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 4443 235666666666666655 7888999999999888333 3444455555555
No 68
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.39 E-value=4.2e-12 Score=115.33 Aligned_cols=104 Identities=24% Similarity=0.269 Sum_probs=80.1
Q ss_pred HHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC
Q psy7829 122 DAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG 201 (511)
Q Consensus 122 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 201 (511)
.+++.+. ..++.+|||+|||+|..+..+++.. .+|+++|+|+.+++.+++++...+ . ++++...|....
T Consensus 21 ~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~-----~-~v~~~~~d~~~~ 89 (195)
T TIGR00477 21 AVREAVK--TVAPCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKAREN-----L-PLRTDAYDINAA 89 (195)
T ss_pred HHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhC-----C-CceeEeccchhc
Confidence 3444554 4456799999999999999999863 479999999999999999887653 2 377778887543
Q ss_pred CCCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEE
Q psy7829 202 YLPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAP 237 (511)
Q Consensus 202 ~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~ 237 (511)
.. .++||+|+++.+++++ .+++.+.|||||.+++.
T Consensus 90 ~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 90 AL-NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred cc-cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 22 3679999998777543 36889999999997664
No 69
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.39 E-value=9.7e-13 Score=109.36 Aligned_cols=100 Identities=29% Similarity=0.392 Sum_probs=81.8
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC--CCCCCccEE
Q psy7829 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY--LPEAPYDVI 211 (511)
Q Consensus 134 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~I 211 (511)
|.+|||+|||+|.++..+++.. ..+++++|+++..++.+++++...+ ..++++++++|+.+.. ...++||+|
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~D~I 74 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNG----LDDRVEVIVGDARDLPEPLPDGKFDLI 74 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCT----TTTTEEEEESHHHHHHHTCTTT-EEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHcc----CCceEEEEECchhhchhhccCceeEEE
Confidence 5689999999999999999985 5789999999999999999999865 3568999999987532 345889999
Q ss_pred EecCCCCc--------------hHHHHHhhcccCcEEEEEEc
Q psy7829 212 YYGGCVSE--------------VPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 212 ~~~~~~~~--------------~~~~~~~~LkpgG~l~~~~~ 239 (511)
++++++.. +.+.+.+.|||||.+++.+.
T Consensus 75 v~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 75 VTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp EE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99998842 23788999999999998653
No 70
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.39 E-value=2.4e-12 Score=122.25 Aligned_cols=110 Identities=15% Similarity=0.177 Sum_probs=85.5
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829 119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA 198 (511)
Q Consensus 119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 198 (511)
+...+++.+. ..++.+|||+|||+|.++..+++. ..+|+++|+|+.+++.++++.. ...++++|+
T Consensus 30 ~a~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~----------~~~~~~~d~ 94 (251)
T PRK10258 30 SADALLAMLP--QRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA----------ADHYLAGDI 94 (251)
T ss_pred HHHHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC----------CCCEEEcCc
Confidence 4444555554 345789999999999999988765 3579999999999999988743 246788998
Q ss_pred CCCCCCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEEEccCCC
Q psy7829 199 REGYLPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAPIGPMDD 243 (511)
Q Consensus 199 ~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~~~~~~ 243 (511)
...+..+++||+|+++.+++++ +.++.+.|||||.++++......
T Consensus 95 ~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 145 (251)
T PRK10258 95 ESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGS 145 (251)
T ss_pred ccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCc
Confidence 7654455789999999887654 47899999999999998665443
No 71
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=2.3e-12 Score=121.10 Aligned_cols=112 Identities=29% Similarity=0.330 Sum_probs=85.6
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829 119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA 198 (511)
Q Consensus 119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 198 (511)
....+++.|....+++.+|||+|||||.+++..++.. ..+|+|+|++|.+++.|++|+..|+. ...++....+.
T Consensus 148 TT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLG--A~~v~g~DiDp~AV~aa~eNa~~N~v----~~~~~~~~~~~ 221 (300)
T COG2264 148 TTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLG--AKKVVGVDIDPQAVEAARENARLNGV----ELLVQAKGFLL 221 (300)
T ss_pred hHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcC--CceEEEecCCHHHHHHHHHHHHHcCC----chhhhcccccc
Confidence 4556777777777899999999999999999998875 45799999999999999999999862 11222333333
Q ss_pred CCCCCCCCCccEEEecCCCC---chHHHHHhhcccCcEEEEE
Q psy7829 199 REGYLPEAPYDVIYYGGCVS---EVPSRVLNQLKKGGRILAP 237 (511)
Q Consensus 199 ~~~~~~~~~fD~I~~~~~~~---~~~~~~~~~LkpgG~l~~~ 237 (511)
... ...++||+|++|--.+ .+...+.+.|||||+++++
T Consensus 222 ~~~-~~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlS 262 (300)
T COG2264 222 LEV-PENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILS 262 (300)
T ss_pred hhh-cccCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEE
Confidence 222 2336899999986332 3347889999999999996
No 72
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=4.1e-12 Score=118.64 Aligned_cols=107 Identities=24% Similarity=0.307 Sum_probs=88.4
Q ss_pred HHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC
Q psy7829 123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY 202 (511)
Q Consensus 123 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 202 (511)
+++.+. ...+.+|||+|||.|.+++.+++.. |..+++.+|++..+++.|++|+..++ .++..+...|..+..
T Consensus 150 Ll~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~-----~~~~~v~~s~~~~~v 221 (300)
T COG2813 150 LLETLP--PDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANG-----VENTEVWASNLYEPV 221 (300)
T ss_pred HHHhCC--ccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcC-----CCccEEEEecccccc
Confidence 455554 3445599999999999999999997 78999999999999999999999875 344477788877655
Q ss_pred CCCCCccEEEecCCCC-----------chHHHHHhhcccCcEEEEEEc
Q psy7829 203 LPEAPYDVIYYGGCVS-----------EVPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 203 ~~~~~fD~I~~~~~~~-----------~~~~~~~~~LkpgG~l~~~~~ 239 (511)
. ++||.|++|+|+| .+.....+.|++||.|.+...
T Consensus 222 ~--~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 222 E--GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred c--ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 4 4899999999995 344778899999999999765
No 73
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.38 E-value=2.4e-12 Score=119.97 Aligned_cols=103 Identities=19% Similarity=0.332 Sum_probs=86.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC------C
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL------P 204 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------~ 204 (511)
..++.+|||+|||+|+.++.+++..+++++|+++|+++++++.|+++++++| ..++++++.+|+.+... +
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g----l~~~i~~~~gda~~~L~~l~~~~~ 141 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG----VDHKINFIQSDALSALDQLLNNDP 141 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEEccHHHHHHHHHhCCC
Confidence 5568899999999999999999988778999999999999999999999986 34689999999875321 1
Q ss_pred CCCccEEEecCCC---CchHHHHHhhcccCcEEEEE
Q psy7829 205 EAPYDVIYYGGCV---SEVPSRVLNQLKKGGRILAP 237 (511)
Q Consensus 205 ~~~fD~I~~~~~~---~~~~~~~~~~LkpgG~l~~~ 237 (511)
.++||+|+++..- ..+...+.+.|+|||.+++.
T Consensus 142 ~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 142 KPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 3689999998643 34557889999999998873
No 74
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.37 E-value=3e-12 Score=116.20 Aligned_cols=102 Identities=21% Similarity=0.255 Sum_probs=84.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC---CCCCCcc
Q psy7829 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY---LPEAPYD 209 (511)
Q Consensus 133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD 209 (511)
...+|||||||+|.++..+++.. |+..++|+|+++.+++.|++++...+ ..|++++++|+...+ .+.+++|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~-----l~ni~~i~~d~~~~~~~~~~~~~~d 89 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLG-----LKNLHVLCGDANELLDKFFPDGSLS 89 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhC-----CCCEEEEccCHHHHHHhhCCCCcee
Confidence 55689999999999999999986 78899999999999999999988753 458999999986421 2346899
Q ss_pred EEEecCCCC--------------chHHHHHhhcccCcEEEEEEcc
Q psy7829 210 VIYYGGCVS--------------EVPSRVLNQLKKGGRILAPIGP 240 (511)
Q Consensus 210 ~I~~~~~~~--------------~~~~~~~~~LkpgG~l~~~~~~ 240 (511)
.|+++.+.+ .+.+.+.+.|||||.|++....
T Consensus 90 ~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 90 KVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred EEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 999986543 2567899999999999986653
No 75
>PRK08317 hypothetical protein; Provisional
Probab=99.36 E-value=9.6e-12 Score=117.39 Aligned_cols=110 Identities=25% Similarity=0.436 Sum_probs=89.5
Q ss_pred HHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC
Q psy7829 121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE 200 (511)
Q Consensus 121 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 200 (511)
..+++.+. +.++.+|||+|||+|.++..+++.+++.++++++|+++.+++.++++... ...++++..+|+..
T Consensus 9 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~------~~~~~~~~~~d~~~ 80 (241)
T PRK08317 9 ARTFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG------LGPNVEFVRGDADG 80 (241)
T ss_pred HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC------CCCceEEEeccccc
Confidence 34455554 67889999999999999999999876778999999999999999988433 34579999999876
Q ss_pred CCCCCCCccEEEecCCCCc------hHHHHHhhcccCcEEEEEE
Q psy7829 201 GYLPEAPYDVIYYGGCVSE------VPSRVLNQLKKGGRILAPI 238 (511)
Q Consensus 201 ~~~~~~~fD~I~~~~~~~~------~~~~~~~~LkpgG~l~~~~ 238 (511)
.....++||+|++...+++ +.+++.+.|||||.+++..
T Consensus 81 ~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 81 LPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred CCCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 4444578999999877754 3478999999999998854
No 76
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.36 E-value=6.7e-12 Score=130.53 Aligned_cols=107 Identities=26% Similarity=0.378 Sum_probs=87.5
Q ss_pred HHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC
Q psy7829 123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY 202 (511)
Q Consensus 123 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 202 (511)
+++.+. +.++.+|||||||+|..+..+++.. ..+|+|+|+|+.+++.|+++... ...+++|.++|+....
T Consensus 258 l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~------~~~~v~~~~~d~~~~~ 327 (475)
T PLN02336 258 FVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIG------RKCSVEFEVADCTKKT 327 (475)
T ss_pred HHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhc------CCCceEEEEcCcccCC
Confidence 444443 5678899999999999999999876 45899999999999999988754 2357999999988654
Q ss_pred CCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEEEc
Q psy7829 203 LPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 203 ~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~~ 239 (511)
.+.++||+|++..++.++ ++++.++|||||.+++...
T Consensus 328 ~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 328 YPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred CCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 445789999998887654 4789999999999998643
No 77
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.36 E-value=9.2e-13 Score=106.30 Aligned_cols=90 Identities=34% Similarity=0.641 Sum_probs=69.7
Q ss_pred EEEEcCCccHHHHHHHHHh--CCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEec
Q psy7829 137 VLDLGSGSGYQTCVFAHMV--GPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYG 214 (511)
Q Consensus 137 vLDiG~G~G~~~~~la~~~--~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~ 214 (511)
|||+|||+|..+..+++.+ ++..+++++|+|+++++.++++....+ .+++++++|+.+.....++||+|++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~------~~~~~~~~D~~~l~~~~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG------PKVRFVQADARDLPFSDGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT------TTSEEEESCTTCHHHHSSSEEEEEE-
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC------CceEEEECCHhHCcccCCCeeEEEEc
Confidence 7999999999999999987 344799999999999999999987632 27999999998744345799999995
Q ss_pred CC-CCch--------HHHHHhhcccCc
Q psy7829 215 GC-VSEV--------PSRVLNQLKKGG 232 (511)
Q Consensus 215 ~~-~~~~--------~~~~~~~LkpgG 232 (511)
.. ++++ .+++.+.|||||
T Consensus 75 ~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 75 GLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 43 5443 378899999998
No 78
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.35 E-value=3.3e-12 Score=118.28 Aligned_cols=134 Identities=25% Similarity=0.371 Sum_probs=90.7
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---c-ccccccccc
Q psy7829 354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---T-NHIDLIANE 429 (511)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~-~~v~~i~~d 429 (511)
...|+++..++.. +++.||++|||.|+|||.+|..+++.++|.|+|+++|.+++.++.|++|+. . .++++...|
T Consensus 23 IiYpkD~~~I~~~--l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~D 100 (247)
T PF08704_consen 23 IIYPKDISYILMR--LDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRD 100 (247)
T ss_dssp ---HHHHHHHHHH--TT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-
T ss_pred eeeCchHHHHHHH--cCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecc
Confidence 4567889898888 999999999999999999999999999999999999999999998888876 2 467777777
Q ss_pred ccc-cc----cccchhhhhcccCCcEEEEEcCCccHHHHHHHHHh-CCCcEEEEhHHHHH---HHHHHHHhcCCCceEE
Q psy7829 430 TIE-II----PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLV-GPTGHVTGLEHMMD---IAIESIANISTNHIDL 499 (511)
Q Consensus 430 ~~~-~l----~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l-~~~g~v~~~~~ml~---~a~~~~~~~~~~~i~~ 499 (511)
..+ .. +..+|.++.+++..|.++ ..+.+.| ++||.+..+...++ ..-+.+.+.|+..|+.
T Consensus 101 v~~~g~~~~~~~~~DavfLDlp~Pw~~i----------~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i~~ 169 (247)
T PF08704_consen 101 VCEEGFDEELESDFDAVFLDLPDPWEAI----------PHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDIET 169 (247)
T ss_dssp GGCG--STT-TTSEEEEEEESSSGGGGH----------HHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEEEE
T ss_pred eecccccccccCcccEEEEeCCCHHHHH----------HHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeeeEE
Confidence 532 12 234555555555555444 6677888 89999988833333 3344455556544443
No 79
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.34 E-value=1.7e-11 Score=118.27 Aligned_cols=111 Identities=22% Similarity=0.233 Sum_probs=84.7
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCC
Q psy7829 120 IADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAR 199 (511)
Q Consensus 120 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 199 (511)
...+++.+.....++.+|||+|||+|.++..+++.. ..+|+++|+++.+++.|++|+..++ ...++.+...+..
T Consensus 146 t~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g--~~~V~avDid~~al~~a~~n~~~n~----~~~~~~~~~~~~~ 219 (288)
T TIGR00406 146 TSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLG--AAKVVGIDIDPLAVESARKNAELNQ----VSDRLQVKLIYLE 219 (288)
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHcC----CCcceEEEecccc
Confidence 344555555445688999999999999998888753 4589999999999999999998865 2345677776633
Q ss_pred CCCCCCCCccEEEecCCCC---chHHHHHhhcccCcEEEEEE
Q psy7829 200 EGYLPEAPYDVIYYGGCVS---EVPSRVLNQLKKGGRILAPI 238 (511)
Q Consensus 200 ~~~~~~~~fD~I~~~~~~~---~~~~~~~~~LkpgG~l~~~~ 238 (511)
.. ..++||+|+++...+ .+..++.+.|||||.++++-
T Consensus 220 ~~--~~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 220 QP--IEGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSG 259 (288)
T ss_pred cc--cCCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 22 246899999987654 34478899999999999863
No 80
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.34 E-value=1.5e-11 Score=120.11 Aligned_cols=109 Identities=17% Similarity=0.240 Sum_probs=82.6
Q ss_pred HHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC
Q psy7829 121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE 200 (511)
Q Consensus 121 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 200 (511)
..++..+. ..++.+|||||||+|+++..++... + .+|+|+|+|+.++..++......+ ...+++++.+|+.+
T Consensus 112 ~~l~~~l~--~l~g~~VLDIGCG~G~~~~~la~~g-~-~~V~GiD~S~~~l~q~~a~~~~~~----~~~~i~~~~~d~e~ 183 (322)
T PRK15068 112 DRVLPHLS--PLKGRTVLDVGCGNGYHMWRMLGAG-A-KLVVGIDPSQLFLCQFEAVRKLLG----NDQRAHLLPLGIEQ 183 (322)
T ss_pred HHHHHhhC--CCCCCEEEEeccCCcHHHHHHHHcC-C-CEEEEEcCCHHHHHHHHHHHHhcC----CCCCeEEEeCCHHH
Confidence 33444443 3467899999999999999999874 3 369999999999876554332211 13479999999876
Q ss_pred CCCCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEEE
Q psy7829 201 GYLPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAPI 238 (511)
Q Consensus 201 ~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~ 238 (511)
... .++||+|++..+++++ ++++++.|+|||.+++..
T Consensus 184 lp~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 184 LPA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred CCC-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 544 5789999998887654 378999999999999863
No 81
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.34 E-value=1.8e-11 Score=109.79 Aligned_cols=100 Identities=19% Similarity=0.268 Sum_probs=81.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV 210 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 210 (511)
..++.+|||+|||+|.++..+++.. + +|+++|+++.+++.+++++..++ .+++++.+|..+.. .++||+
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~~~--~~~fD~ 85 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKG-K--CILTTDINPFAVKELRENAKLNN------VGLDVVMTDLFKGV--RGKFDV 85 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcC-C--EEEEEECCHHHHHHHHHHHHHcC------CceEEEEccccccc--CCcccE
Confidence 3456799999999999999999875 3 79999999999999999988753 26889999987643 258999
Q ss_pred EEecCCCC---------------------------chHHHHHhhcccCcEEEEEEccC
Q psy7829 211 IYYGGCVS---------------------------EVPSRVLNQLKKGGRILAPIGPM 241 (511)
Q Consensus 211 I~~~~~~~---------------------------~~~~~~~~~LkpgG~l~~~~~~~ 241 (511)
|+++.++. .+.+++.+.|||||.+++.....
T Consensus 86 Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 86 ILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred EEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 99998763 12467789999999999865543
No 82
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.34 E-value=1.4e-11 Score=118.17 Aligned_cols=99 Identities=17% Similarity=0.223 Sum_probs=80.0
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCC--ceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCcc
Q psy7829 132 VDGAKVLDLGSGSGYQTCVFAHMVGPT--GKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYD 209 (511)
Q Consensus 132 ~~~~~vLDiG~G~G~~~~~la~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 209 (511)
.++.+|||+|||+|+++..+++..... .+++|+|+|+.+++.|+++. +++.+.++|+.+.+..+++||
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----------~~~~~~~~d~~~lp~~~~sfD 153 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----------PQVTFCVASSHRLPFADQSLD 153 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----------CCCeEEEeecccCCCcCCcee
Confidence 355789999999999999999876322 37999999999999997652 368899999887555568999
Q ss_pred EEEecCCCCchHHHHHhhcccCcEEEEEEccC
Q psy7829 210 VIYYGGCVSEVPSRVLNQLKKGGRILAPIGPM 241 (511)
Q Consensus 210 ~I~~~~~~~~~~~~~~~~LkpgG~l~~~~~~~ 241 (511)
+|++... +...+++.++|||||++++.....
T Consensus 154 ~I~~~~~-~~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 154 AIIRIYA-PCKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred EEEEecC-CCCHHHHHhhccCCCEEEEEeCCC
Confidence 9998765 445689999999999999866543
No 83
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.33 E-value=1.3e-11 Score=116.38 Aligned_cols=111 Identities=23% Similarity=0.270 Sum_probs=87.8
Q ss_pred HHHHHHHHHhhcC-CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc
Q psy7829 119 QIADAAENLKLHL-VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD 197 (511)
Q Consensus 119 ~~~~~~~~l~~~~-~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 197 (511)
+...+++.+.... ..+.+|||+|||+|.++..+++.. +..+++++|+++.+++.++++.. +++.++.+|
T Consensus 19 ~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~---------~~~~~~~~d 88 (240)
T TIGR02072 19 MAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS---------ENVQFICGD 88 (240)
T ss_pred HHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC---------CCCeEEecc
Confidence 4444555554221 345789999999999999999986 77889999999999999987643 268899999
Q ss_pred CCCCCCCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEEEc
Q psy7829 198 AREGYLPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 198 ~~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~~ 239 (511)
+.......++||+|+++.+++++ +.++.+.|||||.+++...
T Consensus 89 ~~~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 89 AEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred hhhCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 88655455789999999877644 4789999999999998654
No 84
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.33 E-value=1.2e-11 Score=111.57 Aligned_cols=115 Identities=22% Similarity=0.336 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEE-
Q psy7829 117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE- 195 (511)
Q Consensus 117 p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~- 195 (511)
|.....+..++. ...+.+|||||++.|+.++.+|.....+++++++|+++++.+.|++|+++.| ..++|.++.
T Consensus 45 ~e~g~~L~~L~~--~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag----~~~~i~~~~~ 118 (219)
T COG4122 45 PETGALLRLLAR--LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG----VDDRIELLLG 118 (219)
T ss_pred hhHHHHHHHHHH--hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC----CcceEEEEec
Confidence 444444444444 6688899999999999999999999658999999999999999999999987 345688888
Q ss_pred ccCCCCCC--CCCCccEEEecCCCC---chHHHHHhhcccCcEEEEE
Q psy7829 196 ADAREGYL--PEAPYDVIYYGGCVS---EVPSRVLNQLKKGGRILAP 237 (511)
Q Consensus 196 ~d~~~~~~--~~~~fD~I~~~~~~~---~~~~~~~~~LkpgG~l~~~ 237 (511)
+|+.+... ..++||+||++..-. ...+.+.++|+|||.+++-
T Consensus 119 gdal~~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 119 GDALDVLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred CcHHHHHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 58764332 248999999997754 4457889999999999983
No 85
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.33 E-value=1.5e-11 Score=118.73 Aligned_cols=101 Identities=15% Similarity=0.193 Sum_probs=77.6
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV 210 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 210 (511)
..++.+|||+|||+|+++..++... + ..|+|+|+|+.++..++......+ ...++.+..+++.+... ..+||+
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g-~-~~v~GiDpS~~ml~q~~~~~~~~~----~~~~v~~~~~~ie~lp~-~~~FD~ 191 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHG-A-KSLVGIDPTVLFLCQFEAVRKLLD----NDKRAILEPLGIEQLHE-LYAFDT 191 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcC-C-CEEEEEcCCHHHHHHHHHHHHHhc----cCCCeEEEECCHHHCCC-CCCcCE
Confidence 4568899999999999999888764 3 479999999999877544322211 23468888888765433 358999
Q ss_pred EEecCCCCch------HHHHHhhcccCcEEEEEE
Q psy7829 211 IYYGGCVSEV------PSRVLNQLKKGGRILAPI 238 (511)
Q Consensus 211 I~~~~~~~~~------~~~~~~~LkpgG~l~~~~ 238 (511)
|++..+++++ ++++++.|||||.|++..
T Consensus 192 V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 192 VFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 9999888654 478999999999999864
No 86
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.33 E-value=7.7e-12 Score=116.74 Aligned_cols=98 Identities=26% Similarity=0.368 Sum_probs=82.1
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEec
Q psy7829 135 AKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYG 214 (511)
Q Consensus 135 ~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~ 214 (511)
.+|||||||+|..+..+++.+ +..+|+++|+|+.+++.+++++...+ ..++++++..|...... .++||+|++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~g----l~~~i~~~~~d~~~~~~-~~~fD~I~~~ 74 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALG----LQGRIRIFYRDSAKDPF-PDTYDLVFGF 74 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcC----CCcceEEEecccccCCC-CCCCCEeehH
Confidence 379999999999999999987 56789999999999999999988765 35579999999865433 3689999988
Q ss_pred CCCCch------HHHHHhhcccCcEEEEEE
Q psy7829 215 GCVSEV------PSRVLNQLKKGGRILAPI 238 (511)
Q Consensus 215 ~~~~~~------~~~~~~~LkpgG~l~~~~ 238 (511)
.+++++ .+++.+.|||||.+++..
T Consensus 75 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 75 EVIHHIKDKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred HHHHhCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 766543 478999999999999854
No 87
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.33 E-value=1.6e-11 Score=120.45 Aligned_cols=107 Identities=17% Similarity=0.239 Sum_probs=85.0
Q ss_pred HHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC
Q psy7829 122 DAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG 201 (511)
Q Consensus 122 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 201 (511)
.+++.+. .....+|||+|||+|.++..+++.. +..+|+++|+++.+++.++++++.++. ..+++..|....
T Consensus 187 lLl~~l~--~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l------~~~~~~~D~~~~ 257 (342)
T PRK09489 187 LLLSTLT--PHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGL------EGEVFASNVFSD 257 (342)
T ss_pred HHHHhcc--ccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC------CCEEEEcccccc
Confidence 3455554 2335589999999999999999986 678899999999999999999988641 356778887653
Q ss_pred CCCCCCccEEEecCCCCc-----------hHHHHHhhcccCcEEEEEEc
Q psy7829 202 YLPEAPYDVIYYGGCVSE-----------VPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 202 ~~~~~~fD~I~~~~~~~~-----------~~~~~~~~LkpgG~l~~~~~ 239 (511)
. .+.||+|+++++++. +.+.+.+.|||||.+++...
T Consensus 258 ~--~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 258 I--KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred c--CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 2 378999999998864 23677899999999998654
No 88
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.33 E-value=1.3e-11 Score=123.37 Aligned_cols=105 Identities=26% Similarity=0.210 Sum_probs=84.2
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCC
Q psy7829 120 IADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAR 199 (511)
Q Consensus 120 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 199 (511)
...+++.+. ++++.+|||||||+|.++..+++.. ..+|+++|+|+++++.|+++.... ++++...|..
T Consensus 156 ~~~l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~l--------~v~~~~~D~~ 223 (383)
T PRK11705 156 LDLICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAGL--------PVEIRLQDYR 223 (383)
T ss_pred HHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhccC--------eEEEEECchh
Confidence 334455554 6789999999999999999999876 458999999999999999987431 4788888876
Q ss_pred CCCCCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEEEc
Q psy7829 200 EGYLPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 200 ~~~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~~~ 239 (511)
.. .++||.|++..+++++ .+++.+.|||||.+++...
T Consensus 224 ~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 224 DL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred hc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 43 3689999988776554 4778999999999998643
No 89
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.32 E-value=7.5e-12 Score=119.16 Aligned_cols=109 Identities=22% Similarity=0.311 Sum_probs=82.9
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829 119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA 198 (511)
Q Consensus 119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 198 (511)
+...+++.|.....++.+|||+|||||.+++..++.. ..+|+++|+++.+++.|++|+..|+ ...++.+. ..
T Consensus 147 TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klG--A~~v~a~DiDp~Av~~a~~N~~~N~----~~~~~~v~--~~ 218 (295)
T PF06325_consen 147 TTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLG--AKKVVAIDIDPLAVEAARENAELNG----VEDRIEVS--LS 218 (295)
T ss_dssp HHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTT--BSEEEEEESSCHHHHHHHHHHHHTT-----TTCEEES--CT
T ss_pred HHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHHcC----CCeeEEEE--Ee
Confidence 5566777777777899999999999999999988874 3589999999999999999999987 33455543 22
Q ss_pred CCCCCCCCCccEEEecCCCCc---hHHHHHhhcccCcEEEEE
Q psy7829 199 REGYLPEAPYDVIYYGGCVSE---VPSRVLNQLKKGGRILAP 237 (511)
Q Consensus 199 ~~~~~~~~~fD~I~~~~~~~~---~~~~~~~~LkpgG~l~~~ 237 (511)
.+ . ..++||+|++|-...- +...+.+.|+|||.++++
T Consensus 219 ~~-~-~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 219 ED-L-VEGKFDLVVANILADVLLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp SC-T-CCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEE
T ss_pred cc-c-ccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEc
Confidence 12 2 2388999999865433 336778899999999997
No 90
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.32 E-value=1.1e-11 Score=117.60 Aligned_cols=106 Identities=17% Similarity=0.237 Sum_probs=78.2
Q ss_pred CCCCEEEEEcCCccH----HHHHHHHHhC----CCceEEEEeCCHHHHHHHHHHHhc------------------cCCCc
Q psy7829 132 VDGAKVLDLGSGSGY----QTCVFAHMVG----PTGKVIGVEHIPELIEASLRNISK------------------GNKDL 185 (511)
Q Consensus 132 ~~~~~vLDiG~G~G~----~~~~la~~~~----~~~~v~~iD~~~~~~~~a~~~~~~------------------~~~~~ 185 (511)
.++.+|||+|||+|. +++.+++... .+.+|+|+|+|+.+++.|++.+-. .+..+
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 356799999999996 5566666543 257899999999999999975311 00000
Q ss_pred ----CCCCCeEEEEccCCCCCCCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEE
Q psy7829 186 ----LDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAP 237 (511)
Q Consensus 186 ----~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~ 237 (511)
-...+|+|.++|+.+..++.++||+|+|..++.++ .+++.+.|+|||.|++.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 01136899999998765556889999998776543 47889999999999974
No 91
>PRK14967 putative methyltransferase; Provisional
Probab=99.31 E-value=3.9e-11 Score=111.59 Aligned_cols=100 Identities=23% Similarity=0.227 Sum_probs=80.4
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV 210 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 210 (511)
+.++.+|||+|||+|.++..+++.. ..+++++|+++.+++.+++|+..++ .+++++.+|+.... ..++||+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~--~~~v~~vD~s~~~l~~a~~n~~~~~------~~~~~~~~d~~~~~-~~~~fD~ 104 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAG--AGSVTAVDISRRAVRSARLNALLAG------VDVDVRRGDWARAV-EFRPFDV 104 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhC------CeeEEEECchhhhc-cCCCeeE
Confidence 5678899999999999999988752 3589999999999999999988753 25889999987643 3468999
Q ss_pred EEecCCCCc---------------------------hHHHHHhhcccCcEEEEEEc
Q psy7829 211 IYYGGCVSE---------------------------VPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 211 I~~~~~~~~---------------------------~~~~~~~~LkpgG~l~~~~~ 239 (511)
|+++.++.. +.+.+.+.|||||++++...
T Consensus 105 Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 105 VVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred EEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 999876431 23567899999999997543
No 92
>KOG1270|consensus
Probab=99.31 E-value=3.6e-12 Score=115.03 Aligned_cols=97 Identities=22% Similarity=0.395 Sum_probs=77.1
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCC----CeEEEEccCCCCCCCCCCcc
Q psy7829 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG----RVRIVEADAREGYLPEAPYD 209 (511)
Q Consensus 134 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~----~v~~~~~d~~~~~~~~~~fD 209 (511)
|.+|||+|||.|.++..||+.. ++|+|+|+++++++.|++...... .... ++++.+.|++.. .+.||
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP---~~~~~~~y~l~~~~~~~E~~---~~~fD 160 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDP---VLEGAIAYRLEYEDTDVEGL---TGKFD 160 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCc---hhccccceeeehhhcchhhc---ccccc
Confidence 5789999999999999999985 469999999999999999944322 1222 366677776542 25599
Q ss_pred EEEecCCCCch--H----HHHHhhcccCcEEEEEEc
Q psy7829 210 VIYYGGCVSEV--P----SRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 210 ~I~~~~~~~~~--~----~~~~~~LkpgG~l~~~~~ 239 (511)
.|+|..+++|+ + ..+.+.|||||.++++.-
T Consensus 161 aVvcsevleHV~dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 161 AVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred eeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeeh
Confidence 99999999887 3 678899999999999754
No 93
>PTZ00146 fibrillarin; Provisional
Probab=99.31 E-value=2.6e-11 Score=114.08 Aligned_cols=114 Identities=25% Similarity=0.271 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhh-cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829 118 NQIADAAENLKL-HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA 196 (511)
Q Consensus 118 ~~~~~~~~~l~~-~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~ 196 (511)
.+.+.++.-+.. .++++.+|||+|||+|.++..++..+++.++|+++|+++.+.+...+.+.. .+||.++.+
T Consensus 116 Klaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-------r~NI~~I~~ 188 (293)
T PTZ00146 116 KLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-------RPNIVPIIE 188 (293)
T ss_pred HHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-------cCCCEEEEC
Confidence 355555444442 368999999999999999999999998889999999998766555444332 247999999
Q ss_pred cCCCCC---CCCCCccEEEecCCCCc----hHHHHHhhcccCcEEEEEE
Q psy7829 197 DAREGY---LPEAPYDVIYYGGCVSE----VPSRVLNQLKKGGRILAPI 238 (511)
Q Consensus 197 d~~~~~---~~~~~fD~I~~~~~~~~----~~~~~~~~LkpgG~l~~~~ 238 (511)
|+.... ....+||+|+++...++ +..++.+.|||||.|++.+
T Consensus 189 Da~~p~~y~~~~~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~i 237 (293)
T PTZ00146 189 DARYPQKYRMLVPMVDVIFADVAQPDQARIVALNAQYFLKNGGHFIISI 237 (293)
T ss_pred CccChhhhhcccCCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEEE
Confidence 986431 12357999999886544 2357889999999999953
No 94
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.31 E-value=1.7e-11 Score=119.14 Aligned_cols=97 Identities=22% Similarity=0.285 Sum_probs=81.1
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEE
Q psy7829 132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVI 211 (511)
Q Consensus 132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 211 (511)
.++.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.|+++... .+++++.+|+.+.....++||+|
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~--------~~i~~i~gD~e~lp~~~~sFDvV 182 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL--------KECKIIEGDAEDLPFPTDYADRY 182 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhc--------cCCeEEeccHHhCCCCCCceeEE
Confidence 467899999999999999999886 457899999999999999987542 36889999987654455789999
Q ss_pred EecCCCCch------HHHHHhhcccCcEEEEE
Q psy7829 212 YYGGCVSEV------PSRVLNQLKKGGRILAP 237 (511)
Q Consensus 212 ~~~~~~~~~------~~~~~~~LkpgG~l~~~ 237 (511)
+++.+++++ ++++.+.|||||++++.
T Consensus 183 Is~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 183 VSAGSIEYWPDPQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred EEcChhhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 998877643 47899999999999874
No 95
>PLN02476 O-methyltransferase
Probab=99.31 E-value=1.5e-11 Score=115.59 Aligned_cols=103 Identities=17% Similarity=0.275 Sum_probs=87.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC------C
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL------P 204 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------~ 204 (511)
..++.+||||||++|+.++.++...+++++|+++|.+++..+.|+++++++| ..++|+++.+|+.+..+ .
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG----l~~~I~li~GdA~e~L~~l~~~~~ 191 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG----VSHKVNVKHGLAAESLKSMIQNGE 191 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEEcCHHHHHHHHHhccc
Confidence 5578899999999999999999988778899999999999999999999987 34689999999864321 1
Q ss_pred CCCccEEEecCCCCc---hHHHHHhhcccCcEEEEE
Q psy7829 205 EAPYDVIYYGGCVSE---VPSRVLNQLKKGGRILAP 237 (511)
Q Consensus 205 ~~~fD~I~~~~~~~~---~~~~~~~~LkpgG~l~~~ 237 (511)
.++||+||++..-.. ..+.+.+.|+|||.+++.
T Consensus 192 ~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 192 GSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 368999999987543 347788999999999873
No 96
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.30 E-value=5.6e-13 Score=107.19 Aligned_cols=91 Identities=19% Similarity=0.398 Sum_probs=59.8
Q ss_pred EEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC--CCCCccEEEecC
Q psy7829 138 LDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL--PEAPYDVIYYGG 215 (511)
Q Consensus 138 LDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD~I~~~~ 215 (511)
||+|||+|.++..+++.+ +..+++++|+|+.+++.+++++...+ ..+......+..+... ..++||+|++..
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~ 74 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELG-----NDNFERLRFDVLDLFDYDPPESFDLVVASN 74 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT--------EEEEE--SSS---CCC----SEEEEE-
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC-----CcceeEEEeecCChhhcccccccceehhhh
Confidence 799999999999999997 78899999999999999998888743 2334444444333221 125899999999
Q ss_pred CCCchH------HHHHhhcccCcEE
Q psy7829 216 CVSEVP------SRVLNQLKKGGRI 234 (511)
Q Consensus 216 ~~~~~~------~~~~~~LkpgG~l 234 (511)
+++++. +++.+.|||||.|
T Consensus 75 vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 75 VLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred hHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 998773 7889999999986
No 97
>PLN02672 methionine S-methyltransferase
Probab=99.30 E-value=2.8e-11 Score=132.53 Aligned_cols=143 Identities=16% Similarity=0.073 Sum_probs=109.0
Q ss_pred CCCCcccccCCCcccchhHHHHHHHHHHhhcCC---CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy7829 100 PYQDVSASLGYAGVMNAPNQIADAAENLKLHLV---DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLR 176 (511)
Q Consensus 100 ~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~---~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~ 176 (511)
.|++..+.+..+..+++|+....+.. +..... ++.+|||+|||+|.+++.+++.. +..+|+++|+|+.+++.|++
T Consensus 83 ~F~~l~~~V~p~VLIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~ 160 (1082)
T PLN02672 83 NRKKLTMMEIPSIFIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWI 160 (1082)
T ss_pred EecCCceeeCCCcccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHH
Confidence 56777888999999999987776544 542211 24689999999999999999987 66799999999999999999
Q ss_pred HHhccCCCc-----------CCCCCeEEEEccCCCCCCC-CCCccEEEecCCCC--------------------------
Q psy7829 177 NISKGNKDL-----------LDSGRVRIVEADAREGYLP-EAPYDVIYYGGCVS-------------------------- 218 (511)
Q Consensus 177 ~~~~~~~~~-----------~~~~~v~~~~~d~~~~~~~-~~~fD~I~~~~~~~-------------------------- 218 (511)
|+..++.+. ...++++|+++|+.+.... ..+||+|++|+++-
T Consensus 161 Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p 240 (1082)
T PLN02672 161 NLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSN 240 (1082)
T ss_pred HHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCc
Confidence 998754110 0125799999999865532 13699999998750
Q ss_pred ------------------chHHHHHhhcccCcEEEEEEccCCCc
Q psy7829 219 ------------------EVPSRVLNQLKKGGRILAPIGPMDDF 244 (511)
Q Consensus 219 ------------------~~~~~~~~~LkpgG~l~~~~~~~~~~ 244 (511)
.+...+.+.|+|||.+++.++..+..
T Consensus 241 ~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~ 284 (1082)
T PLN02672 241 YCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQ 284 (1082)
T ss_pred cccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHH
Confidence 01145567999999999999876654
No 98
>PLN03075 nicotianamine synthase; Provisional
Probab=99.30 E-value=3.5e-11 Score=113.67 Aligned_cols=102 Identities=21% Similarity=0.176 Sum_probs=80.6
Q ss_pred CCCCEEEEEcCCccHH-HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhc-cCCCcCCCCCeEEEEccCCCCCCCCCCcc
Q psy7829 132 VDGAKVLDLGSGSGYQ-TCVFAHMVGPTGKVIGVEHIPELIEASLRNISK-GNKDLLDSGRVRIVEADAREGYLPEAPYD 209 (511)
Q Consensus 132 ~~~~~vLDiG~G~G~~-~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 209 (511)
.++.+|+|||||.|.+ ++.++....|+++++++|+++++++.|++.+.. .+ ..++++|..+|+.+.....+.||
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~g----L~~rV~F~~~Da~~~~~~l~~FD 197 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPD----LSKRMFFHTADVMDVTESLKEYD 197 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccC----ccCCcEEEECchhhcccccCCcC
Confidence 3778999999997754 455554445889999999999999999999854 33 34679999999987543347899
Q ss_pred EEEecCCCC--------chHHHHHhhcccCcEEEEEE
Q psy7829 210 VIYYGGCVS--------EVPSRVLNQLKKGGRILAPI 238 (511)
Q Consensus 210 ~I~~~~~~~--------~~~~~~~~~LkpgG~l~~~~ 238 (511)
+|++. ++. .+.+.+.+.|+|||.+++-.
T Consensus 198 lVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 198 VVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 99999 443 24488999999999999854
No 99
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.29 E-value=4e-11 Score=118.16 Aligned_cols=118 Identities=19% Similarity=0.142 Sum_probs=93.5
Q ss_pred cchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEE
Q psy7829 114 MNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI 193 (511)
Q Consensus 114 ~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~ 193 (511)
...|.+...+++... ++++.+|||+|||+|.++..++.. ..+++|+|+++.+++.+++|++..+ ..++++
T Consensus 165 ~l~~~la~~~~~l~~--~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g-----~~~i~~ 234 (329)
T TIGR01177 165 SMDPKLARAMVNLAR--VTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYG-----IEDFFV 234 (329)
T ss_pred CCCHHHHHHHHHHhC--CCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhC-----CCCCeE
Confidence 335666666776664 778999999999999998887664 3579999999999999999998864 345899
Q ss_pred EEccCCCCCCCCCCccEEEecCCCC---------------chHHHHHhhcccCcEEEEEEccC
Q psy7829 194 VEADAREGYLPEAPYDVIYYGGCVS---------------EVPSRVLNQLKKGGRILAPIGPM 241 (511)
Q Consensus 194 ~~~d~~~~~~~~~~fD~I~~~~~~~---------------~~~~~~~~~LkpgG~l~~~~~~~ 241 (511)
.++|+.+.....++||+|++++|+. .+++.+.+.|||||++++.+...
T Consensus 235 ~~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 235 KRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred EecchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 9999987544457899999997751 23467889999999999876543
No 100
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.29 E-value=3.6e-11 Score=113.73 Aligned_cols=104 Identities=27% Similarity=0.329 Sum_probs=78.2
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCC
Q psy7829 120 IADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAR 199 (511)
Q Consensus 120 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 199 (511)
...+++.+.....++.+|||+|||+|.+++.+++.. . .+|+++|+|+.+++.|++|+..++ ...++.+..+|
T Consensus 106 t~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g-~-~~v~giDis~~~l~~A~~n~~~~~----~~~~~~~~~~~-- 177 (250)
T PRK00517 106 TRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLG-A-KKVLAVDIDPQAVEAARENAELNG----VELNVYLPQGD-- 177 (250)
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcC-C-CeEEEEECCHHHHHHHHHHHHHcC----CCceEEEccCC--
Confidence 334555555446689999999999999998877653 3 469999999999999999998864 12334443332
Q ss_pred CCCCCCCCccEEEecCCCCc---hHHHHHhhcccCcEEEEE
Q psy7829 200 EGYLPEAPYDVIYYGGCVSE---VPSRVLNQLKKGGRILAP 237 (511)
Q Consensus 200 ~~~~~~~~fD~I~~~~~~~~---~~~~~~~~LkpgG~l~~~ 237 (511)
.+||+|+++...+. +..++.+.|||||.++++
T Consensus 178 ------~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 178 ------LKADVIVANILANPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred ------CCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 27999998765432 347889999999999986
No 101
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.29 E-value=1.3e-11 Score=107.94 Aligned_cols=96 Identities=19% Similarity=0.286 Sum_probs=73.5
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEE
Q psy7829 132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVI 211 (511)
Q Consensus 132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 211 (511)
..-.++||+|||.|.++..||.++. +++++|+|+.+++.|++++.. .++|+++++|+.+.++ .+.||+|
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd---~LlavDis~~Al~~Ar~Rl~~-------~~~V~~~~~dvp~~~P-~~~FDLI 110 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCD---RLLAVDISPRALARARERLAG-------LPHVEWIQADVPEFWP-EGRFDLI 110 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEE---EEEEEES-HHHHHHHHHHTTT--------SSEEEEES-TTT----SS-EEEE
T ss_pred cccceeEecCCCccHHHHHHHHhhC---ceEEEeCCHHHHHHHHHhcCC-------CCCeEEEECcCCCCCC-CCCeeEE
Confidence 3446899999999999999999973 599999999999999999875 4589999999987554 4899999
Q ss_pred EecCCCCch---------HHHHHhhcccCcEEEEEE
Q psy7829 212 YYGGCVSEV---------PSRVLNQLKKGGRILAPI 238 (511)
Q Consensus 212 ~~~~~~~~~---------~~~~~~~LkpgG~l~~~~ 238 (511)
+++..+..+ ..++.+.|+|||.|++..
T Consensus 111 V~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 111 VLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp EEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 998877543 356778999999999843
No 102
>PRK06922 hypothetical protein; Provisional
Probab=99.29 E-value=2.5e-11 Score=124.94 Aligned_cols=101 Identities=19% Similarity=0.338 Sum_probs=82.6
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC--CCCCCc
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY--LPEAPY 208 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~f 208 (511)
..++.+|||+|||+|..+..+++.. +..+|+|+|+|+.|++.|+++.... ..+++++++|..+.. .++++|
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~------g~~ie~I~gDa~dLp~~fedeSF 488 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNE------GRSWNVIKGDAINLSSSFEKESV 488 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhc------CCCeEEEEcchHhCccccCCCCE
Confidence 3468899999999999999999886 7889999999999999999887653 236888999987533 345789
Q ss_pred cEEEecCCCCc-------------------hHHHHHhhcccCcEEEEEE
Q psy7829 209 DVIYYGGCVSE-------------------VPSRVLNQLKKGGRILAPI 238 (511)
Q Consensus 209 D~I~~~~~~~~-------------------~~~~~~~~LkpgG~l~~~~ 238 (511)
|+|+++.++++ +++++.+.|||||.+++..
T Consensus 489 DvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 489 DTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred EEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 99998876553 2367889999999999854
No 103
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.28 E-value=4.6e-11 Score=117.12 Aligned_cols=104 Identities=26% Similarity=0.261 Sum_probs=87.9
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC--CCCCCCc
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG--YLPEAPY 208 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~f 208 (511)
...+..+||||||+|.++..+|+.. |+..++|+|+++.+++.+.+++...+ .+|+.++++|+... ..+++++
T Consensus 120 ~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~g-----L~NV~~i~~DA~~ll~~~~~~s~ 193 (390)
T PRK14121 120 KNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLN-----LKNLLIINYDARLLLELLPSNSV 193 (390)
T ss_pred CCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEECCHHHhhhhCCCCce
Confidence 3456799999999999999999997 88899999999999999999988753 57899999998642 2345889
Q ss_pred cEEEecCCCCc------------hHHHHHhhcccCcEEEEEEcc
Q psy7829 209 DVIYYGGCVSE------------VPSRVLNQLKKGGRILAPIGP 240 (511)
Q Consensus 209 D~I~~~~~~~~------------~~~~~~~~LkpgG~l~~~~~~ 240 (511)
|.|+++.+.+| ++..+.+.|+|||.+.+....
T Consensus 194 D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 194 EKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred eEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 99999887753 457899999999999996653
No 104
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.28 E-value=2.9e-11 Score=112.68 Aligned_cols=161 Identities=14% Similarity=0.123 Sum_probs=104.0
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCC-eEEEEcc
Q psy7829 119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGR-VRIVEAD 197 (511)
Q Consensus 119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~-v~~~~~d 197 (511)
-..++...+. --.|.+|||||||+|+++..++.+. + ..|+|+|.+....-+.+.--.-. +.+. +.++..-
T Consensus 103 KW~rl~p~l~--~L~gk~VLDIGC~nGY~~frM~~~G-A-~~ViGiDP~~lf~~QF~~i~~~l-----g~~~~~~~lplg 173 (315)
T PF08003_consen 103 KWDRLLPHLP--DLKGKRVLDIGCNNGYYSFRMLGRG-A-KSVIGIDPSPLFYLQFEAIKHFL-----GQDPPVFELPLG 173 (315)
T ss_pred hHHHHHhhhC--CcCCCEEEEecCCCcHHHHHHhhcC-C-CEEEEECCChHHHHHHHHHHHHh-----CCCccEEEcCcc
Confidence 3445555553 2368999999999999999999885 3 57999999887766544322211 1222 3333223
Q ss_pred CCCCCCCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEEEccCCCcceEEEEEEecCCeEEEEeecceEEEec
Q psy7829 198 AREGYLPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAI 271 (511)
Q Consensus 198 ~~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 271 (511)
+++.+. .+.||+|++-+++.|. +..+++.|+|||.+++..-.-.+......+-. + ......++.|+|-
T Consensus 174 vE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~---~--rYa~m~nv~FiPs 247 (315)
T PF08003_consen 174 VEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPE---D--RYAKMRNVWFIPS 247 (315)
T ss_pred hhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccC---C--cccCCCceEEeCC
Confidence 333333 5789999999988654 37899999999999997544333333333322 2 2235567899998
Q ss_pred ccccccc-cccccccCcccccccc
Q psy7829 272 MRKALQM-DIHKFQMDPVDENLFT 294 (511)
Q Consensus 272 ~~~~~~~-~~~~~~~~~~~~~~~~ 294 (511)
......| .+.||....+.....+
T Consensus 248 ~~~L~~wl~r~gF~~v~~v~~~~T 271 (315)
T PF08003_consen 248 VAALKNWLERAGFKDVRCVDVSPT 271 (315)
T ss_pred HHHHHHHHHHcCCceEEEecCccC
Confidence 8765555 4678888765544433
No 105
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.28 E-value=3.4e-11 Score=106.82 Aligned_cols=106 Identities=24% Similarity=0.209 Sum_probs=79.1
Q ss_pred HHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC
Q psy7829 122 DAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG 201 (511)
Q Consensus 122 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 201 (511)
.+++.+. .-++.++||+|||.|..+..||++. ..|+++|+|+..++.+++.+++.+ . +|+..+.|+.+.
T Consensus 21 ~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~G---~~VtAvD~s~~al~~l~~~a~~~~-----l-~i~~~~~Dl~~~ 89 (192)
T PF03848_consen 21 EVLEAVP--LLKPGKALDLGCGEGRNALYLASQG---FDVTAVDISPVALEKLQRLAEEEG-----L-DIRTRVADLNDF 89 (192)
T ss_dssp HHHHHCT--TS-SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-------TEEEEE-BGCCB
T ss_pred HHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHhhcC-----c-eeEEEEecchhc
Confidence 3445444 3456799999999999999999985 359999999999999988877743 2 499999998764
Q ss_pred CCCCCCccEEEecCCCCc--------hHHHHHhhcccCcEEEEEEc
Q psy7829 202 YLPEAPYDVIYYGGCVSE--------VPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 202 ~~~~~~fD~I~~~~~~~~--------~~~~~~~~LkpgG~l~~~~~ 239 (511)
.. .+.||+|++..++.. +.+++.+.++|||++++...
T Consensus 90 ~~-~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 90 DF-PEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp S--TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cc-cCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 33 368999998766543 33678889999999888543
No 106
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.27 E-value=8.3e-12 Score=113.02 Aligned_cols=111 Identities=26% Similarity=0.393 Sum_probs=88.0
Q ss_pred HHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC
Q psy7829 122 DAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG 201 (511)
Q Consensus 122 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 201 (511)
.++..+. ......+||||||++|+.++.+|+.++++++|+++|++++..+.|++++++.| ..++|+++.+|+.+.
T Consensus 35 ~lL~~l~-~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag----~~~~I~~~~gda~~~ 109 (205)
T PF01596_consen 35 QLLQMLV-RLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG----LDDRIEVIEGDALEV 109 (205)
T ss_dssp HHHHHHH-HHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT----GGGGEEEEES-HHHH
T ss_pred HHHHHHH-HhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC----CCCcEEEEEeccHhh
Confidence 3444443 14467899999999999999999998778999999999999999999999976 356899999998642
Q ss_pred CC------CCCCccEEEecCCCCchH---HHHHhhcccCcEEEEE
Q psy7829 202 YL------PEAPYDVIYYGGCVSEVP---SRVLNQLKKGGRILAP 237 (511)
Q Consensus 202 ~~------~~~~fD~I~~~~~~~~~~---~~~~~~LkpgG~l~~~ 237 (511)
.+ ..++||+||++..-.... +.+.+.|+|||.+++.
T Consensus 110 l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 110 LPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp HHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHhccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEc
Confidence 11 136899999998765443 6778999999999883
No 107
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.27 E-value=6.6e-11 Score=111.60 Aligned_cols=111 Identities=26% Similarity=0.411 Sum_probs=88.2
Q ss_pred HHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC
Q psy7829 121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE 200 (511)
Q Consensus 121 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 200 (511)
..++..+. ..++.+|||+|||+|..+..+++.+++..+++++|+++.+++.+++++...+ ...++.++.+|+.+
T Consensus 41 ~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~ 114 (239)
T PRK00216 41 RKTIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG----LSGNVEFVQGDAEA 114 (239)
T ss_pred HHHHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc----cccCeEEEeccccc
Confidence 33455554 4577899999999999999999987436899999999999999999986643 23578999999876
Q ss_pred CCCCCCCccEEEecCCCCc------hHHHHHhhcccCcEEEEE
Q psy7829 201 GYLPEAPYDVIYYGGCVSE------VPSRVLNQLKKGGRILAP 237 (511)
Q Consensus 201 ~~~~~~~fD~I~~~~~~~~------~~~~~~~~LkpgG~l~~~ 237 (511)
.....++||+|+++..+++ +++++.+.|+|||.+++.
T Consensus 115 ~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 115 LPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred CCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEE
Confidence 5444578999998776643 347889999999999874
No 108
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.27 E-value=3.7e-11 Score=116.07 Aligned_cols=95 Identities=22% Similarity=0.222 Sum_probs=77.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEE
Q psy7829 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIY 212 (511)
Q Consensus 133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~ 212 (511)
++.+|||+|||+|..+..+++.. .+|+++|+|+.+++.+++++...+ . ++++...|+..... .++||+|+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~-----l-~v~~~~~D~~~~~~-~~~fD~I~ 189 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKEN-----L-NIRTGLYDINSASI-QEEYDFIL 189 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcC-----C-ceEEEEechhcccc-cCCccEEE
Confidence 44599999999999999998863 479999999999999999988753 2 78888888865333 47899999
Q ss_pred ecCCCCc--------hHHHHHhhcccCcEEEEE
Q psy7829 213 YGGCVSE--------VPSRVLNQLKKGGRILAP 237 (511)
Q Consensus 213 ~~~~~~~--------~~~~~~~~LkpgG~l~~~ 237 (511)
+..++++ +.+++.+.|+|||++++.
T Consensus 190 ~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 190 STVVLMFLNRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred EcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 9877653 347889999999997764
No 109
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.27 E-value=4.3e-11 Score=110.08 Aligned_cols=112 Identities=25% Similarity=0.394 Sum_probs=87.1
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccc
Q psy7829 354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANET 430 (511)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~ 430 (511)
.+.|..++++++. +.++++++|||||||+|+.+..+++.++++++|+++|+++++++.+++++. ..+++++.+|.
T Consensus 59 ~~~p~~~~~~~~~--l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~ 136 (212)
T PRK13942 59 ISAIHMVAIMCEL--LDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDG 136 (212)
T ss_pred eCcHHHHHHHHHH--cCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc
Confidence 4578889999987 788999999999999999999999998777899999999999888777654 56788888886
Q ss_pred ccccc--ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 431 IEIIP--HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 431 ~~~l~--~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
....+ ..+|.++ +.|.-..+...+.+.|+|+|+++..
T Consensus 137 ~~~~~~~~~fD~I~-----------~~~~~~~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 137 TLGYEENAPYDRIY-----------VTAAGPDIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred ccCCCcCCCcCEEE-----------ECCCcccchHHHHHhhCCCcEEEEE
Confidence 54332 2344333 3333344556788899999998776
No 110
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.26 E-value=1.4e-10 Score=105.83 Aligned_cols=140 Identities=24% Similarity=0.358 Sum_probs=97.1
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----ccccccc
Q psy7829 351 DNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLI 426 (511)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i 426 (511)
..++.+++++ +.+.+..+.+.++.+|||+|||+|.+++.+++..++.++|+++|+++++++.+++|+. ..++.++
T Consensus 19 ~~~~~t~~~~-r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~ 97 (198)
T PRK00377 19 EEIPMTKEEI-RALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLI 97 (198)
T ss_pred CCCCCCHHHH-HHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEE
Confidence 3567888888 5555556888999999999999999999999887667899999999988887766643 3467777
Q ss_pred cccccccccccchhhhhcccCCcEEEEEcCC---ccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCCCceEEE
Q psy7829 427 ANETIEIIPHILDLCYLNLHRGAKVLEIGSG---SGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDLI 500 (511)
Q Consensus 427 ~~d~~~~l~~~~d~i~~~l~~~~~vLD~~~g---~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~~~i~~i 500 (511)
.+|..+.++..- ..-+.++ ++++ ...+...+.+.++|+|.++.. .+-++.+.+.+++.|+ +++.+
T Consensus 98 ~~d~~~~l~~~~-------~~~D~V~-~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~-~~~~~ 168 (198)
T PRK00377 98 KGEAPEILFTIN-------EKFDRIF-IGGGSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGF-NLEIT 168 (198)
T ss_pred EechhhhHhhcC-------CCCCEEE-ECCCcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCC-CeEEE
Confidence 776644332110 1112232 2222 234455667788999998754 5566777778877776 44433
No 111
>PRK05785 hypothetical protein; Provisional
Probab=99.26 E-value=6.9e-11 Score=109.72 Aligned_cols=94 Identities=14% Similarity=0.139 Sum_probs=74.1
Q ss_pred HHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC
Q psy7829 123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY 202 (511)
Q Consensus 123 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 202 (511)
++..+.....++.+|||+|||+|..+..+++.. ..+|+|+|+|++|++.|+++ ..++++|+...+
T Consensus 41 ~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~-------------~~~~~~d~~~lp 105 (226)
T PRK05785 41 LVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA-------------DDKVVGSFEALP 105 (226)
T ss_pred HHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc-------------cceEEechhhCC
Confidence 444443223457899999999999999999885 35899999999999998764 134678887765
Q ss_pred CCCCCccEEEecCCCCch------HHHHHhhcccC
Q psy7829 203 LPEAPYDVIYYGGCVSEV------PSRVLNQLKKG 231 (511)
Q Consensus 203 ~~~~~fD~I~~~~~~~~~------~~~~~~~Lkpg 231 (511)
.++++||+|++...++++ .+++.++|||.
T Consensus 106 ~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 106 FRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred CCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence 567899999999888764 37899999993
No 112
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.25 E-value=1.5e-10 Score=104.70 Aligned_cols=138 Identities=18% Similarity=0.251 Sum_probs=92.5
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cccccccccc
Q psy7829 353 GPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANE 429 (511)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d 429 (511)
.|.+++.+...+. ..+.+.++.+|||+|||+|.+++.+++.. ++++|+++|+++++++.+++|+. ..+++++.++
T Consensus 12 ~~~~~~~~r~~~~-~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d 89 (187)
T PRK08287 12 VPMTKEEVRALAL-SKLELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGE 89 (187)
T ss_pred CCCchHHHHHHHH-HhcCCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecC
Confidence 4567777754332 23677889999999999999999999886 67899999999988887766554 4567777776
Q ss_pred ccccccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCCCceEEE
Q psy7829 430 TIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDLI 500 (511)
Q Consensus 430 ~~~~l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~~~i~~i 500 (511)
....++..+|.++..... .....+...+.+.|+|+|.++.. ..-.+...+.+++.|+..++++
T Consensus 90 ~~~~~~~~~D~v~~~~~~--------~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~ 155 (187)
T PRK08287 90 APIELPGKADAIFIGGSG--------GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDCV 155 (187)
T ss_pred chhhcCcCCCEEEECCCc--------cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceEE
Confidence 533333334443322100 11223455677889999998764 4445666677777777545543
No 113
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.25 E-value=7.6e-11 Score=115.26 Aligned_cols=108 Identities=19% Similarity=0.277 Sum_probs=86.6
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCC
Q psy7829 120 IADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAR 199 (511)
Q Consensus 120 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 199 (511)
...+++.+. ..++.+|||||||+|.++..+++++ |..+++++|. +.+++.+++++...+ ..++++++.+|+.
T Consensus 138 ~~~l~~~~~--~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~g----l~~rv~~~~~d~~ 209 (306)
T TIGR02716 138 IQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKG----VADRMRGIAVDIY 209 (306)
T ss_pred HHHHHHHcC--CCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCC----ccceEEEEecCcc
Confidence 334455444 6678899999999999999999997 7889999997 799999999998865 3568999999987
Q ss_pred CCCCCCCCccEEEecCCCCc--------hHHHHHhhcccCcEEEEE
Q psy7829 200 EGYLPEAPYDVIYYGGCVSE--------VPSRVLNQLKKGGRILAP 237 (511)
Q Consensus 200 ~~~~~~~~fD~I~~~~~~~~--------~~~~~~~~LkpgG~l~~~ 237 (511)
+... ..+|+|++...++. +++++.+.|||||++++.
T Consensus 210 ~~~~--~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 210 KESY--PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred CCCC--CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 5332 23799987776542 357889999999999885
No 114
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.24 E-value=1.4e-10 Score=114.49 Aligned_cols=115 Identities=10% Similarity=0.137 Sum_probs=78.4
Q ss_pred HHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc------ccccccccccccc
Q psy7829 360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST------NHIDLIANETIEI 433 (511)
Q Consensus 360 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~------~~v~~i~~d~~~~ 433 (511)
+..++.. ++...+.+|||+|||+|.+++.+++.. |..+|+++|+++.+++.+++|+.. .+++++.+|..+.
T Consensus 217 trllL~~--lp~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~ 293 (378)
T PRK15001 217 ARFFMQH--LPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG 293 (378)
T ss_pred HHHHHHh--CCcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc
Confidence 3344554 555556799999999999999999887 778999999999888888877642 2567777776655
Q ss_pred cc-ccchhhhhcccCCcEEEEEcCC-ccHHHHHHHHHhCCCcEEEEh
Q psy7829 434 IP-HILDLCYLNLHRGAKVLEIGSG-SGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 434 l~-~~~d~i~~~l~~~~~vLD~~~g-~g~~~~~l~~~l~~~g~v~~~ 478 (511)
++ ..+|.++.|.+-.... .+... .-.+.....+.|+|+|.++.+
T Consensus 294 ~~~~~fDlIlsNPPfh~~~-~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 294 VEPFRFNAVLCNPPFHQQH-ALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred CCCCCEEEEEECcCcccCc-cCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 43 3678887765432110 01100 012234456788999998877
No 115
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.24 E-value=8.4e-11 Score=107.70 Aligned_cols=113 Identities=19% Similarity=0.322 Sum_probs=84.2
Q ss_pred CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----cccccccccc
Q psy7829 355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANET 430 (511)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~ 430 (511)
.++..++++++. +.+.++++|||+|||+|+.+..+++.+++.++|+++|+++++++.+++|+.. ++++++.+|.
T Consensus 56 ~~p~~~~~~~~~--l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~ 133 (205)
T PRK13944 56 SAPHMVAMMCEL--IEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDG 133 (205)
T ss_pred chHHHHHHHHHh--cCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCc
Confidence 456778888887 7788999999999999999999999886668999999999998887776652 2477788776
Q ss_pred cccccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 431 IEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 431 ~~~l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
.+.++.. .+-+.|+ +.+....+...+.+.|+|+|.++..
T Consensus 134 ~~~~~~~--------~~fD~Ii-~~~~~~~~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 134 KRGLEKH--------APFDAII-VTAAASTIPSALVRQLKDGGVLVIP 172 (205)
T ss_pred ccCCccC--------CCccEEE-EccCcchhhHHHHHhcCcCcEEEEE
Confidence 5543320 1122232 3334456677888999999998764
No 116
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.22 E-value=3.2e-10 Score=103.32 Aligned_cols=141 Identities=17% Similarity=0.278 Sum_probs=92.3
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---cccccccccccc
Q psy7829 354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANET 430 (511)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~ 430 (511)
|.+++.+..++.. .+.+.++++|||+|||+|.+++.+++.. +.++|+++|+++++++.+.+|+ +..+++++.+|.
T Consensus 22 p~t~~~v~~~l~~-~l~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~ 99 (196)
T PRK07402 22 PLTKREVRLLLIS-QLRLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSA 99 (196)
T ss_pred CCCHHHHHHHHHH-hcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECch
Confidence 5677888654332 3677899999999999999999998765 6689999999999888877765 345688887776
Q ss_pred cccccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCCCceEEEec
Q psy7829 431 IEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDLIAN 502 (511)
Q Consensus 431 ~~~l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~~~i~~i~~ 502 (511)
.+.++... ..++...++.+.....+...+.+.|+|+|.++.. ...+....+..+..+..+.+.+|.
T Consensus 100 ~~~~~~~~------~~~d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (196)
T PRK07402 100 PECLAQLA------PAPDRVCIEGGRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVVQA 168 (196)
T ss_pred HHHHhhCC------CCCCEEEEECCcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEEE
Confidence 44322110 0122233333222345567778889999998877 323333444455444434455544
No 117
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.22 E-value=1.4e-10 Score=105.67 Aligned_cols=79 Identities=18% Similarity=0.352 Sum_probs=66.2
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCcc
Q psy7829 130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYD 209 (511)
Q Consensus 130 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 209 (511)
.+.++.+|||+|||+|..+..+++.. +..+++|+|+|+.+++.|+++.. ++.+.++|+.+ +..+++||
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~----------~~~~~~~d~~~-~~~~~sfD 107 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLP----------NINIIQGSLFD-PFKDNFFD 107 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCC----------CCcEEEeeccC-CCCCCCEE
Confidence 35677899999999999999999875 56789999999999999987642 46788899877 44568999
Q ss_pred EEEecCCCCch
Q psy7829 210 VIYYGGCVSEV 220 (511)
Q Consensus 210 ~I~~~~~~~~~ 220 (511)
+|+++.+++++
T Consensus 108 ~V~~~~vL~hl 118 (204)
T TIGR03587 108 LVLTKGVLIHI 118 (204)
T ss_pred EEEECChhhhC
Confidence 99999988765
No 118
>PRK14968 putative methyltransferase; Provisional
Probab=99.22 E-value=2.1e-10 Score=103.87 Aligned_cols=108 Identities=31% Similarity=0.379 Sum_probs=83.8
Q ss_pred HHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC
Q psy7829 123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY 202 (511)
Q Consensus 123 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 202 (511)
+++.+. ..++.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++..++. ...++.++.+|..+..
T Consensus 15 l~~~~~--~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~---~~~~~~~~~~d~~~~~ 86 (188)
T PRK14968 15 LAENAV--DKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNI---RNNGVEVIRSDLFEPF 86 (188)
T ss_pred HHHhhh--ccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCC---CCcceEEEeccccccc
Confidence 344443 467889999999999999999987 35799999999999999999887541 1112889999987654
Q ss_pred CCCCCccEEEecCCCCc---------------------------hHHHHHhhcccCcEEEEEEc
Q psy7829 203 LPEAPYDVIYYGGCVSE---------------------------VPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 203 ~~~~~fD~I~~~~~~~~---------------------------~~~~~~~~LkpgG~l~~~~~ 239 (511)
.. ..||+|+++.++.. +.+++.+.|||||.+++.+.
T Consensus 87 ~~-~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 87 RG-DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred cc-cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 33 48999999876532 34788899999999988654
No 119
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.21 E-value=9.8e-11 Score=107.24 Aligned_cols=96 Identities=19% Similarity=0.279 Sum_probs=75.7
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC--------
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY-------- 202 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-------- 202 (511)
++++.+|||+|||+|.++..+++..++.++|+++|+++. . ..++++++++|+....
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~---------~-------~~~~v~~i~~D~~~~~~~~~i~~~ 112 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM---------D-------PIVGVDFLQGDFRDELVLKALLER 112 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc---------c-------CCCCcEEEecCCCChHHHHHHHHH
Confidence 478899999999999999999999877789999999881 1 1346899999988631
Q ss_pred CCCCCccEEEecCCCC-----------------chHHHHHhhcccCcEEEEEEccCC
Q psy7829 203 LPEAPYDVIYYGGCVS-----------------EVPSRVLNQLKKGGRILAPIGPMD 242 (511)
Q Consensus 203 ~~~~~fD~I~~~~~~~-----------------~~~~~~~~~LkpgG~l~~~~~~~~ 242 (511)
...++||+|+++.+.+ .+++.+.+.|||||.+++.+....
T Consensus 113 ~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~ 169 (209)
T PRK11188 113 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE 169 (209)
T ss_pred hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc
Confidence 2347899999976432 134788999999999999765443
No 120
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.21 E-value=5.6e-11 Score=120.66 Aligned_cols=180 Identities=18% Similarity=0.160 Sum_probs=119.1
Q ss_pred cCCCCCCCCcccCCCccHHHHHHHHHHcCCCCCH-HH-HHHHHhC-C---CCCccCCCCCCCcccccCCCcccchhHHHH
Q psy7829 48 VIPPPDNLNHFKNEGTCQTDLVNHLRDIGKIRTE-RV-AQAFYKV-D---RGNFANEEPYQDVSASLGYAGVMNAPNQIA 121 (511)
Q Consensus 48 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~-~~a~~~~-~---r~~~~~~~~y~~~~~~~~~~~~~~~p~~~~ 121 (511)
...++...+++|+...+...+.+.|...++...+ .+ ..++... . +..+.....|..+.+.++.-+++
T Consensus 29 ~~~~~~~~lRvN~lK~~~~~~~~~L~~~g~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~G~~yvQd~sS~------- 101 (470)
T PRK11933 29 CQRPLRRSIRVNTLKISVADFLQLMAPYGWTLTPIPWCEEGFWIERDDEDALPLGNTAEHLSGLFYIQEASSM------- 101 (470)
T ss_pred cCCCCCeEEEEcCCcCCHHHHHHHHHhCCCceeECCCCCceEEEecCccccCCcccChHHHCCcEEEECHHHH-------
Confidence 4455667788999888888998888777652111 00 0011000 0 00011112233333333221111
Q ss_pred HHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC
Q psy7829 122 DAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG 201 (511)
Q Consensus 122 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 201 (511)
.....+....++|.+|||+|||+|.-+.+++..++..+.|+++|+++..++..++|+++.| ..|+.+...|....
T Consensus 102 l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G-----~~nv~v~~~D~~~~ 176 (470)
T PRK11933 102 LPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG-----VSNVALTHFDGRVF 176 (470)
T ss_pred HHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEeCchhhh
Confidence 1123331125789999999999999999999998778899999999999999999999964 67889999997642
Q ss_pred C-CCCCCccEEEecCCCC----------------------------chHHHHHhhcccCcEEEEEEc
Q psy7829 202 Y-LPEAPYDVIYYGGCVS----------------------------EVPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 202 ~-~~~~~fD~I~~~~~~~----------------------------~~~~~~~~~LkpgG~l~~~~~ 239 (511)
. ...+.||.|+++.+|. .++..+.+.|||||+|+.++-
T Consensus 177 ~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 177 GAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred hhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 1 1236799999999883 123567889999999988643
No 121
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.21 E-value=1.3e-10 Score=107.44 Aligned_cols=111 Identities=25% Similarity=0.402 Sum_probs=84.5
Q ss_pred CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cccccccccccc
Q psy7829 355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETI 431 (511)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~ 431 (511)
..|..++.+++. +.++++++|||||||+|+++..+++..+++++|+++|+++++++.+++++. ..|++++.+|..
T Consensus 61 ~~p~~~~~~~~~--l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~ 138 (215)
T TIGR00080 61 SAPHMVAMMTEL--LELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGT 138 (215)
T ss_pred chHHHHHHHHHH--hCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcc
Confidence 467788888887 788999999999999999999999998667889999999988887776654 567888888875
Q ss_pred cccc--ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 432 EIIP--HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 432 ~~l~--~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
+..+ ..+|.++.. +....+...+.+.|+|+|+++..
T Consensus 139 ~~~~~~~~fD~Ii~~-----------~~~~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 139 QGWEPLAPYDRIYVT-----------AAGPKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred cCCcccCCCCEEEEc-----------CCcccccHHHHHhcCcCcEEEEE
Confidence 5432 234443322 22233456778889999998765
No 122
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.21 E-value=8.6e-11 Score=109.26 Aligned_cols=102 Identities=21% Similarity=0.295 Sum_probs=86.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCC------
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLP------ 204 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~------ 204 (511)
.....+|||||+++|+.++.+|+..+++++++++|.+++..+.|++++++.| ..++|+++.+|+.+..+.
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag----~~~~I~~~~G~a~e~L~~l~~~~~ 152 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG----VAHKIDFREGPALPVLDQMIEDGK 152 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC----CCCceEEEeccHHHHHHHHHhccc
Confidence 4467799999999999999999988778999999999999999999999987 457899999998643211
Q ss_pred -CCCccEEEecCCCCch---HHHHHhhcccCcEEEE
Q psy7829 205 -EAPYDVIYYGGCVSEV---PSRVLNQLKKGGRILA 236 (511)
Q Consensus 205 -~~~fD~I~~~~~~~~~---~~~~~~~LkpgG~l~~ 236 (511)
.++||+||++..-... .+.+.+.|+|||.+++
T Consensus 153 ~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 153 YHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred cCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEE
Confidence 2689999999775433 3677899999999987
No 123
>PRK04457 spermidine synthase; Provisional
Probab=99.19 E-value=1.9e-10 Score=109.11 Aligned_cols=103 Identities=20% Similarity=0.271 Sum_probs=82.4
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCccE
Q psy7829 132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPYDV 210 (511)
Q Consensus 132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~ 210 (511)
.++.+|||||||+|.++..+++.. |..+++++|+++++++.|++++...+ ..++++++.+|+.+... ..++||+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~----~~~rv~v~~~Da~~~l~~~~~~yD~ 139 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPE----NGERFEVIEADGAEYIAVHRHSTDV 139 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCC----CCCceEEEECCHHHHHHhCCCCCCE
Confidence 456789999999999999999987 78899999999999999999976532 24689999999864322 2367999
Q ss_pred EEecCCC----------CchHHHHHhhcccCcEEEEEEc
Q psy7829 211 IYYGGCV----------SEVPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 211 I~~~~~~----------~~~~~~~~~~LkpgG~l~~~~~ 239 (511)
|+++.-- ..+.+.+.+.|+|||++++.+.
T Consensus 140 I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 140 ILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred EEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 9986411 2345789999999999998654
No 124
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.19 E-value=3.9e-10 Score=101.77 Aligned_cols=115 Identities=16% Similarity=0.117 Sum_probs=83.8
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829 119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA 198 (511)
Q Consensus 119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 198 (511)
+...+++.+. ...++.+|||+|||+|.+++.++... ..+|+++|+++.+++.+++|++.++ ..+++++++|+
T Consensus 40 v~e~l~~~l~-~~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~-----~~~v~~~~~D~ 111 (199)
T PRK10909 40 VRETLFNWLA-PVIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLK-----AGNARVVNTNA 111 (199)
T ss_pred HHHHHHHHHh-hhcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhC-----CCcEEEEEchH
Confidence 3344555553 12467899999999999998655443 3589999999999999999998864 45799999998
Q ss_pred CCCCC-CCCCccEEEecCCCC-chHH----HHHh--hcccCcEEEEEEccC
Q psy7829 199 REGYL-PEAPYDVIYYGGCVS-EVPS----RVLN--QLKKGGRILAPIGPM 241 (511)
Q Consensus 199 ~~~~~-~~~~fD~I~~~~~~~-~~~~----~~~~--~LkpgG~l~~~~~~~ 241 (511)
.+... ...+||+|++++|+. .+.. .+.. +|+|++.++++....
T Consensus 112 ~~~l~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 112 LSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred HHHHhhcCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 75332 234699999999963 3332 2332 368899999886643
No 125
>KOG1271|consensus
Probab=99.19 E-value=1.7e-10 Score=98.03 Aligned_cols=99 Identities=21% Similarity=0.300 Sum_probs=78.3
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEe
Q psy7829 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYY 213 (511)
Q Consensus 134 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~ 213 (511)
..+|||+|||.|.+...|++.. -.+.++|+|.|+.+++.|+..+++.+ ..+.|+|.+.|+..+....++||+|+-
T Consensus 68 A~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~----~~n~I~f~q~DI~~~~~~~~qfdlvlD 142 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDG----FSNEIRFQQLDITDPDFLSGQFDLVLD 142 (227)
T ss_pred ccceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcC----CCcceeEEEeeccCCcccccceeEEee
Confidence 3499999999999999999875 45679999999999999988888764 233499999999875444578888865
Q ss_pred cCCCCc--------------hHHHHHhhcccCcEEEEE
Q psy7829 214 GGCVSE--------------VPSRVLNQLKKGGRILAP 237 (511)
Q Consensus 214 ~~~~~~--------------~~~~~~~~LkpgG~l~~~ 237 (511)
-..+.. ....+.+.|+|||++++.
T Consensus 143 KGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvIt 180 (227)
T KOG1271|consen 143 KGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVIT 180 (227)
T ss_pred cCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEE
Confidence 443322 136788999999999984
No 126
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.19 E-value=2.4e-10 Score=104.66 Aligned_cols=104 Identities=21% Similarity=0.227 Sum_probs=75.6
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCC-------CcCCCCCeEEEEccCCCCCCC
Q psy7829 132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK-------DLLDSGRVRIVEADAREGYLP 204 (511)
Q Consensus 132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-------~~~~~~~v~~~~~d~~~~~~~ 204 (511)
.++.+|||+|||.|..+..||++. .+|+|+|+|+.+++.+.+....... ......+++++++|+.+....
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G---~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQG---HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCC---CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 577899999999999999999874 3699999999999986442211000 000124699999999864322
Q ss_pred -CCCccEEEecCCCCchH--------HHHHhhcccCcEEEEEE
Q psy7829 205 -EAPYDVIYYGGCVSEVP--------SRVLNQLKKGGRILAPI 238 (511)
Q Consensus 205 -~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~l~~~~ 238 (511)
.+.||.|+....+.+++ +.+.++|||||++++..
T Consensus 110 ~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 110 DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 35799998877665553 67899999999876643
No 127
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.19 E-value=2.5e-10 Score=106.40 Aligned_cols=107 Identities=24% Similarity=0.373 Sum_probs=85.1
Q ss_pred HHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC
Q psy7829 122 DAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG 201 (511)
Q Consensus 122 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 201 (511)
.+++.+. ..++.+|||+|||+|..+..+++..+..++++++|+++.+++.++++... ..+++++.+|+.+.
T Consensus 30 ~~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~-------~~~i~~~~~d~~~~ 100 (223)
T TIGR01934 30 RAVKLIG--VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL-------PLNIEFIQADAEAL 100 (223)
T ss_pred HHHHHhc--cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc-------CCCceEEecchhcC
Confidence 3444443 44788999999999999999999874337899999999999999988651 34689999998865
Q ss_pred CCCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEE
Q psy7829 202 YLPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAP 237 (511)
Q Consensus 202 ~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~ 237 (511)
....++||+|+++..++++ .+++.+.|+|||.+++.
T Consensus 101 ~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 101 PFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred CCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence 4445789999987766543 47889999999999874
No 128
>KOG1541|consensus
Probab=99.17 E-value=1.7e-10 Score=101.16 Aligned_cols=114 Identities=23% Similarity=0.320 Sum_probs=87.2
Q ss_pred hhHHHHHHHHHHhhcCCC--CCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEE
Q psy7829 116 APNQIADAAENLKLHLVD--GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI 193 (511)
Q Consensus 116 ~p~~~~~~~~~l~~~~~~--~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~ 193 (511)
+..+..+.++++. ++. ..-|||||||||..+..+.... -.++|+|+|+.|++.|.+.--+ -.+
T Consensus 33 Q~em~eRaLELLa--lp~~~~~~iLDIGCGsGLSg~vL~~~G---h~wiGvDiSpsML~~a~~~e~e----------gdl 97 (270)
T KOG1541|consen 33 QAEMAERALELLA--LPGPKSGLILDIGCGSGLSGSVLSDSG---HQWIGVDISPSMLEQAVERELE----------GDL 97 (270)
T ss_pred hHHHHHHHHHHhh--CCCCCCcEEEEeccCCCcchheeccCC---ceEEeecCCHHHHHHHHHhhhh----------cCe
Confidence 5567888888887 554 5679999999999998887754 3599999999999999973211 257
Q ss_pred EEccCCCCCC-CCCCccEEEecCCCCchH-----------------HHHHhhcccCcEEEEEEccCCCc
Q psy7829 194 VEADAREGYL-PEAPYDVIYYGGCVSEVP-----------------SRVLNQLKKGGRILAPIGPMDDF 244 (511)
Q Consensus 194 ~~~d~~~~~~-~~~~fD~I~~~~~~~~~~-----------------~~~~~~LkpgG~l~~~~~~~~~~ 244 (511)
+.+|+-++.+ ..++||.+++..+++|+- ..++.+|++|++.++-+.+....
T Consensus 98 il~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~ 166 (270)
T KOG1541|consen 98 ILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEA 166 (270)
T ss_pred eeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchH
Confidence 8888776543 469999998877665431 35788999999999987766543
No 129
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.16 E-value=1.2e-10 Score=101.71 Aligned_cols=96 Identities=24% Similarity=0.418 Sum_probs=79.1
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC--CCCCC
Q psy7829 130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY--LPEAP 207 (511)
Q Consensus 130 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~ 207 (511)
.+++|.+|||+|||.|.+...|.+. .+.+.+|+|++++.+..|.++ .+.++++|+.+.. .++++
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r------------Gv~Viq~Dld~gL~~f~d~s 75 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR------------GVSVIQGDLDEGLADFPDQS 75 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc------------CCCEEECCHHHhHhhCCCCC
Confidence 4679999999999999999998886 467899999999998877654 4789999998643 35689
Q ss_pred ccEEEecCCCCchH---HHHHhhcccCcEEEEEEc
Q psy7829 208 YDVIYYGGCVSEVP---SRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 208 fD~I~~~~~~~~~~---~~~~~~LkpgG~l~~~~~ 239 (511)
||.|+.+.+++.+. .-+.+.|+-|...++++.
T Consensus 76 FD~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVsFP 110 (193)
T PF07021_consen 76 FDYVILSQTLQAVRRPDEVLEEMLRVGRRAIVSFP 110 (193)
T ss_pred ccEEehHhHHHhHhHHHHHHHHHHHhcCeEEEEec
Confidence 99999999887764 446677888888888765
No 130
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.15 E-value=1.3e-10 Score=102.28 Aligned_cols=92 Identities=28% Similarity=0.470 Sum_probs=72.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV 210 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 210 (511)
..++.+|||+|||+|.++..+++.. . +++++|+++.+++. . ++.....+......+.++||+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~-~--~~~g~D~~~~~~~~------~---------~~~~~~~~~~~~~~~~~~fD~ 81 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRG-F--EVTGVDISPQMIEK------R---------NVVFDNFDAQDPPFPDGSFDL 81 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTT-S--EEEEEESSHHHHHH------T---------TSEEEEEECHTHHCHSSSEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhC-C--EEEEEECCHHHHhh------h---------hhhhhhhhhhhhhccccchhh
Confidence 5688999999999999999997763 3 89999999999887 1 233333333232334588999
Q ss_pred EEecCCCCchH------HHHHhhcccCcEEEEEEcc
Q psy7829 211 IYYGGCVSEVP------SRVLNQLKKGGRILAPIGP 240 (511)
Q Consensus 211 I~~~~~~~~~~------~~~~~~LkpgG~l~~~~~~ 240 (511)
|++..++++++ +.+.+.|||||.+++.+..
T Consensus 82 i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 82 IICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp EEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred HhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 99999998774 7899999999999997654
No 131
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.15 E-value=5.4e-10 Score=108.59 Aligned_cols=115 Identities=16% Similarity=0.237 Sum_probs=81.7
Q ss_pred HHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCC
Q psy7829 125 ENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLP 204 (511)
Q Consensus 125 ~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 204 (511)
+.+...+.++.+|||+|||+|..+..+++.+....+++++|+|++|++.+++++.... ..-++.++++|+.+....
T Consensus 55 ~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~----p~~~v~~i~gD~~~~~~~ 130 (301)
T TIGR03438 55 DEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY----PQLEVHGICADFTQPLAL 130 (301)
T ss_pred HHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC----CCceEEEEEEcccchhhh
Confidence 3333345677899999999999999999987325789999999999999999876531 123577889998753211
Q ss_pred CC-----CccEEEecCCCCc--------hHHHHHhhcccCcEEEEEEccCCC
Q psy7829 205 EA-----PYDVIYYGGCVSE--------VPSRVLNQLKKGGRILAPIGPMDD 243 (511)
Q Consensus 205 ~~-----~fD~I~~~~~~~~--------~~~~~~~~LkpgG~l~~~~~~~~~ 243 (511)
.. ...+++++..+.+ +++++.+.|+|||.+++.+.....
T Consensus 131 ~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~~ 182 (301)
T TIGR03438 131 PPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVKD 182 (301)
T ss_pred hcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCCC
Confidence 12 2234444444433 347889999999999997665443
No 132
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.14 E-value=4.6e-10 Score=104.27 Aligned_cols=108 Identities=15% Similarity=0.155 Sum_probs=79.7
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829 119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA 198 (511)
Q Consensus 119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 198 (511)
+...+++.+.....++.+|||+|||+|.++..+++. ..+|+|+|+|+++++.|++++...+ ...++.+.++|+
T Consensus 41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~----~~~~i~~~~~d~ 113 (219)
T TIGR02021 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRD----VAGNVEFEVNDL 113 (219)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEECCh
Confidence 344455555422356889999999999999999875 3479999999999999999987643 235799999998
Q ss_pred CCCCCCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEE
Q psy7829 199 REGYLPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILA 236 (511)
Q Consensus 199 ~~~~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~ 236 (511)
.... ++||+|++...+.++ ..++.+.+++++.+.+
T Consensus 114 ~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 114 LSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred hhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 7643 689999987665443 2556677776554443
No 133
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.13 E-value=4.8e-10 Score=114.98 Aligned_cols=115 Identities=23% Similarity=0.288 Sum_probs=88.1
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829 119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA 198 (511)
Q Consensus 119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 198 (511)
+...+++.+. ..++.+|||+|||+|.+++.+++.. .+|+|+|+|+.+++.|++|+..++ .++++++++|+
T Consensus 285 l~~~vl~~l~--~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~-----~~~v~~~~~d~ 354 (443)
T PRK13168 285 MVARALEWLD--PQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNG-----LDNVTFYHANL 354 (443)
T ss_pred HHHHHHHHhc--CCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEEeCh
Confidence 3444445443 5678899999999999999999875 479999999999999999998764 45799999998
Q ss_pred CCCCC----CCCCccEEEecCCCCchHH--HHHhhcccCcEEEEEEccCCC
Q psy7829 199 REGYL----PEAPYDVIYYGGCVSEVPS--RVLNQLKKGGRILAPIGPMDD 243 (511)
Q Consensus 199 ~~~~~----~~~~fD~I~~~~~~~~~~~--~~~~~LkpgG~l~~~~~~~~~ 243 (511)
.+... ..++||+|+++++.....+ +....++|++.+++++++..-
T Consensus 355 ~~~l~~~~~~~~~fD~Vi~dPPr~g~~~~~~~l~~~~~~~ivyvSCnp~tl 405 (443)
T PRK13168 355 EEDFTDQPWALGGFDKVLLDPPRAGAAEVMQALAKLGPKRIVYVSCNPATL 405 (443)
T ss_pred HHhhhhhhhhcCCCCEEEECcCCcChHHHHHHHHhcCCCeEEEEEeChHHh
Confidence 65321 2357999999988764432 222336899999999887653
No 134
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.12 E-value=5.8e-10 Score=98.98 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=78.0
Q ss_pred HHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC
Q psy7829 122 DAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG 201 (511)
Q Consensus 122 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 201 (511)
.+++.+. +.++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++.. .++++++.+|+.+.
T Consensus 4 ~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~-------~~~v~ii~~D~~~~ 71 (169)
T smart00650 4 KIVRAAN--LRPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAA-------ADNLTVIHGDALKF 71 (169)
T ss_pred HHHHhcC--CCCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhcc-------CCCEEEEECchhcC
Confidence 4555554 6678899999999999999999873 4799999999999999998754 34799999999875
Q ss_pred CCCCCCccEEEecCCCCchH---HHHHhh--cccCcEEEE
Q psy7829 202 YLPEAPYDVIYYGGCVSEVP---SRVLNQ--LKKGGRILA 236 (511)
Q Consensus 202 ~~~~~~fD~I~~~~~~~~~~---~~~~~~--LkpgG~l~~ 236 (511)
......||.|+++.+++... ..+.+. +.++|.+++
T Consensus 72 ~~~~~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~ 111 (169)
T smart00650 72 DLPKLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMV 111 (169)
T ss_pred CccccCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEE
Confidence 44445699999999887433 333322 235666665
No 135
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.10 E-value=5.8e-10 Score=109.16 Aligned_cols=110 Identities=14% Similarity=0.052 Sum_probs=85.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCccEE
Q psy7829 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPYDVI 211 (511)
Q Consensus 133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I 211 (511)
++.+|||+|||+|.++..+++.. .+|+|+|+++.+++.|+++++.++ .++++|+++|+.+... ..+.||+|
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~-----l~~v~~~~~D~~~~~~~~~~~~D~V 244 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELG-----LTNVQFQALDSTQFATAQGEVPDLV 244 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEEcCHHHHHHhcCCCCeEE
Confidence 57899999999999999999853 479999999999999999998864 4689999999875322 23579999
Q ss_pred EecCCCCchHH---HHHhhcccCcEEEEEEccCCCcceEEEE
Q psy7829 212 YYGGCVSEVPS---RVLNQLKKGGRILAPIGPMDDFQKLTQI 250 (511)
Q Consensus 212 ~~~~~~~~~~~---~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 250 (511)
+++++...+.. ++...++|++.+++++.+......+..+
T Consensus 245 v~dPPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l 286 (315)
T PRK03522 245 LVNPPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL 286 (315)
T ss_pred EECCCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc
Confidence 99988654433 3444568889999988876654443333
No 136
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=7.6e-10 Score=109.39 Aligned_cols=177 Identities=19% Similarity=0.248 Sum_probs=121.9
Q ss_pred cCCCCCCCCcccCCCccHHHHHHHHHHcCCCCCHH-HHHHHHhCCCC-CccCCCCCCCcccccCCCcccchhHHHHHHHH
Q psy7829 48 VIPPPDNLNHFKNEGTCQTDLVNHLRDIGKIRTER-VAQAFYKVDRG-NFANEEPYQDVSASLGYAGVMNAPNQIADAAE 125 (511)
Q Consensus 48 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~a~~~~~r~-~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~ 125 (511)
.+.+....++.|+...+...+...|...++...+. .......+... .......|.++.+.++..+++ +.+ .
T Consensus 78 ~~~~~~~~~Rvn~lk~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~vQd~sS~----l~a---~ 150 (355)
T COG0144 78 LLRPPPRSLRVNTLKADVEELLEALEEAGVLDEKPWVLDEVLRIEASGPIGRLPEFAEGLIYVQDEASQ----LPA---L 150 (355)
T ss_pred cCCCCCeeEEEcCccCCHHHHHHHHhhcccccccCCccccEEEecCCCCcccChhhhceEEEEcCHHHH----HHH---H
Confidence 44445577888998999999999998876533222 11111111111 111122466655555543322 222 2
Q ss_pred HHhhcCCCCCEEEEEcCCccHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC---
Q psy7829 126 NLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGP-TGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG--- 201 (511)
Q Consensus 126 ~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~--- 201 (511)
.|. .++|.+|||++++.|.-|.+++..... ...|+++|+++.-++..++|+++. +..|+..+..|....
T Consensus 151 ~L~--p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl-----G~~nv~~~~~d~~~~~~~ 223 (355)
T COG0144 151 VLD--PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRL-----GVRNVIVVNKDARRLAEL 223 (355)
T ss_pred HcC--CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHc-----CCCceEEEeccccccccc
Confidence 333 789999999999999999999999854 345699999999999999999996 466788888887632
Q ss_pred CCCCCCccEEEecCCCC----------------------------chHHHHHhhcccCcEEEEEE
Q psy7829 202 YLPEAPYDVIYYGGCVS----------------------------EVPSRVLNQLKKGGRILAPI 238 (511)
Q Consensus 202 ~~~~~~fD~I~~~~~~~----------------------------~~~~~~~~~LkpgG~l~~~~ 238 (511)
....++||.|+++++|. .++....+.|||||.|+.++
T Consensus 224 ~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 224 LPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred ccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 22223699999999982 22367789999999999864
No 137
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=3.3e-10 Score=106.67 Aligned_cols=132 Identities=23% Similarity=0.253 Sum_probs=91.2
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccc----ccc
Q psy7829 353 GPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDL----IAN 428 (511)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~----i~~ 428 (511)
|.+++..+...++...-.+.+|.+|||+|||||.+++.+++... .+|+|+|+|+-.++.+++|...+++.. ...
T Consensus 142 GTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~ 219 (300)
T COG2264 142 GTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNGVELLVQAKGF 219 (300)
T ss_pred CCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccc
Confidence 34555556666666445667999999999999999999998763 789999999999999999999888873 122
Q ss_pred ccccccc-ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCC
Q psy7829 429 ETIEIIP-HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANIST 494 (511)
Q Consensus 429 d~~~~l~-~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~ 494 (511)
+..+... ..+|.++.|+-.+-.+ .++..+.+.++|+|.++.. ..-.+...+...+.|+
T Consensus 220 ~~~~~~~~~~~DvIVANILA~vl~--------~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf 281 (300)
T COG2264 220 LLLEVPENGPFDVIVANILAEVLV--------ELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGF 281 (300)
T ss_pred cchhhcccCcccEEEehhhHHHHH--------HHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCC
Confidence 2222233 3677777665322111 3456777889999998754 3334555555555565
No 138
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.09 E-value=6.1e-10 Score=100.72 Aligned_cols=93 Identities=24% Similarity=0.295 Sum_probs=72.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC--------
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY-------- 202 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-------- 202 (511)
++++.+|||+|||+|.++..+++...+.++|+++|+++.+ . .++++++++|+.+..
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~-------~~~i~~~~~d~~~~~~~~~l~~~ 93 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------P-------IENVDFIRGDFTDEEVLNKIRER 93 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------c-------CCCceEEEeeCCChhHHHHHHHH
Confidence 5789999999999999999999887667789999999864 1 125788888976531
Q ss_pred CCCCCccEEEecCCC-----------------CchHHHHHhhcccCcEEEEEEc
Q psy7829 203 LPEAPYDVIYYGGCV-----------------SEVPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 203 ~~~~~fD~I~~~~~~-----------------~~~~~~~~~~LkpgG~l~~~~~ 239 (511)
...++||+|+++.+. ..+...+.+.|+|||++++.+.
T Consensus 94 ~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 94 VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred hCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 234679999987532 1234678999999999998654
No 139
>PRK00811 spermidine synthase; Provisional
Probab=99.07 E-value=9.3e-10 Score=105.68 Aligned_cols=107 Identities=22% Similarity=0.230 Sum_probs=81.9
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCccE
Q psy7829 132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPYDV 210 (511)
Q Consensus 132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~ 210 (511)
..+.+||+||||.|..+..+++.. +..+|+++|+++.+++.|++++...+.+.+..++++++.+|+..... ..++||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 456799999999999999998763 45689999999999999999887532111235689999999875322 3478999
Q ss_pred EEecCCCC----------chHHHHHhhcccCcEEEEEEc
Q psy7829 211 IYYGGCVS----------EVPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 211 I~~~~~~~----------~~~~~~~~~LkpgG~l~~~~~ 239 (511)
|+++...+ .+.+.+.+.|+|||.+++..+
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 99975332 234688999999999987543
No 140
>PHA03412 putative methyltransferase; Provisional
Probab=99.07 E-value=1.3e-09 Score=99.04 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=62.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhC--CCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829 133 DGAKVLDLGSGSGYQTCVFAHMVG--PTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV 210 (511)
Q Consensus 133 ~~~~vLDiG~G~G~~~~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 210 (511)
.+.+|||+|||+|.++..+++... +..+|+++|+++.+++.|+++.. ++.++.+|+..... .++||+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~----------~~~~~~~D~~~~~~-~~~FDl 117 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP----------EATWINADALTTEF-DTLFDM 117 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc----------CCEEEEcchhcccc-cCCccE
Confidence 467999999999999999998642 35689999999999999998743 47899999875332 468999
Q ss_pred EEecCCCC
Q psy7829 211 IYYGGCVS 218 (511)
Q Consensus 211 I~~~~~~~ 218 (511)
|++|+|+.
T Consensus 118 IIsNPPY~ 125 (241)
T PHA03412 118 AISNPPFG 125 (241)
T ss_pred EEECCCCC
Confidence 99999884
No 141
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.07 E-value=1.2e-08 Score=100.40 Aligned_cols=114 Identities=19% Similarity=0.230 Sum_probs=79.1
Q ss_pred HHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccc--ccccccccccccccc
Q psy7829 361 AHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHI--DLIANETIEIIPHIL 438 (511)
Q Consensus 361 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v--~~i~~d~~~~l~~~~ 438 (511)
..++.. +......+|||+|||+|.+++.+++.. |..+|+++|++..+++.+++++..+++ +++.+|..+.++..+
T Consensus 186 ~lLl~~--l~~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~f 262 (342)
T PRK09489 186 QLLLST--LTPHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRF 262 (342)
T ss_pred HHHHHh--ccccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCc
Confidence 344443 444455689999999999999999886 667999999999999988887765544 355566555556678
Q ss_pred hhhhhcccCCcEEEEEc-CCccHHHHHHHHHhCCCcEEEEh
Q psy7829 439 DLCYLNLHRGAKVLEIG-SGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 439 d~i~~~l~~~~~vLD~~-~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
|.++.+.+-.. .++.. .....+.....+.|+|+|.++.+
T Consensus 263 DlIvsNPPFH~-g~~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 263 DMIISNPPFHD-GIQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred cEEEECCCccC-CccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 88888754322 11110 01234455667889999998776
No 142
>PRK06202 hypothetical protein; Provisional
Probab=99.06 E-value=1.2e-09 Score=102.35 Aligned_cols=90 Identities=17% Similarity=0.176 Sum_probs=68.3
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCc
Q psy7829 132 VDGAKVLDLGSGSGYQTCVFAHMV---GPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPY 208 (511)
Q Consensus 132 ~~~~~vLDiG~G~G~~~~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 208 (511)
.++.+|||+|||+|.++..+++.. ++..+|+|+|+|+.+++.|+++.... ++++...+.......+++|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~--------~~~~~~~~~~~l~~~~~~f 130 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP--------GVTFRQAVSDELVAEGERF 130 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC--------CCeEEEEecccccccCCCc
Confidence 467899999999999999888653 34568999999999999998875432 4566666554333345789
Q ss_pred cEEEecCCCCchH--------HHHHhhcc
Q psy7829 209 DVIYYGGCVSEVP--------SRVLNQLK 229 (511)
Q Consensus 209 D~I~~~~~~~~~~--------~~~~~~Lk 229 (511)
|+|+++.+++++. +++.+.++
T Consensus 131 D~V~~~~~lhh~~d~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 131 DVVTSNHFLHHLDDAEVVRLLADSAALAR 159 (232)
T ss_pred cEEEECCeeecCChHHHHHHHHHHHHhcC
Confidence 9999999887664 45667776
No 143
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.05 E-value=1.7e-10 Score=94.94 Aligned_cols=57 Identities=23% Similarity=0.482 Sum_probs=50.2
Q ss_pred CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc----cccccccccccc
Q psy7829 373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI----STNHIDLIANET 430 (511)
Q Consensus 373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~----~~~~v~~i~~d~ 430 (511)
|+.+|||||||+|.+++.+++.. +..+|+++|+++++++.++++. ..+++.++++|.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 61 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA 61 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc
Confidence 68899999999999999999965 5699999999999999988887 257788888877
No 144
>PRK04266 fibrillarin; Provisional
Probab=99.05 E-value=1.6e-09 Score=100.07 Aligned_cols=131 Identities=16% Similarity=0.206 Sum_probs=84.0
Q ss_pred HHHHHHHHHh-hcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-cccccccccccccc--
Q psy7829 358 RSIAHILDLC-YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-TNHIDLIANETIEI-- 433 (511)
Q Consensus 358 ~~~~~~~~~~-~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-~~~v~~i~~d~~~~-- 433 (511)
...+.++... .+.++++.+|||+|||+|+.+..+++.++ .++|+++|+++++++...++.. ..|+.++.+|....
T Consensus 56 ~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~ 134 (226)
T PRK04266 56 KLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPER 134 (226)
T ss_pred chHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcch
Confidence 4444555421 27888999999999999999999999884 6899999999988776544433 36788887775421
Q ss_pred ---ccccchhhhhcccCCcEEEEEcCC-c-cHHHHHHHHHhCCCcEEEE------h------HHHHHHHHHHHHhcCCCc
Q psy7829 434 ---IPHILDLCYLNLHRGAKVLEIGSG-S-GYLATLMAHLVGPTGHVTG------L------EHMMDIAIESIANISTNH 496 (511)
Q Consensus 434 ---l~~~~d~i~~~l~~~~~vLD~~~g-~-g~~~~~l~~~l~~~g~v~~------~------~~ml~~a~~~~~~~~~~~ 496 (511)
++..+|.++.. +.-. . ..+...+.+.|+|||+++. + ....+...+.++..|+..
T Consensus 135 ~~~l~~~~D~i~~d---------~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~ 205 (226)
T PRK04266 135 YAHVVEKVDVIYQD---------VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEI 205 (226)
T ss_pred hhhccccCCEEEEC---------CCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeE
Confidence 12224443322 1110 1 1124577788999999988 4 122233346666667644
Q ss_pred eE
Q psy7829 497 ID 498 (511)
Q Consensus 497 i~ 498 (511)
++
T Consensus 206 i~ 207 (226)
T PRK04266 206 LE 207 (226)
T ss_pred EE
Confidence 43
No 145
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.05 E-value=1.9e-09 Score=99.14 Aligned_cols=103 Identities=20% Similarity=0.177 Sum_probs=74.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhcc------CC-CcCCCCCeEEEEccCCCCCC
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKG------NK-DLLDSGRVRIVEADAREGYL 203 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~------~~-~~~~~~~v~~~~~d~~~~~~ 203 (511)
..++.+|||+|||.|..+..||++. .+|+|+|+|+.+++.+.+..... +. ......+|++.++|+.+...
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G---~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQG---HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCC---CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCc
Confidence 4567899999999999999999863 36999999999999874321110 00 00123579999999986533
Q ss_pred C-CCCccEEEecCCCCch--------HHHHHhhcccCcEEEE
Q psy7829 204 P-EAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILA 236 (511)
Q Consensus 204 ~-~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~ 236 (511)
. .+.||.|+....+.++ .+.+.++|||||++++
T Consensus 112 ~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 112 ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 2 2579999977666555 3678999999997554
No 146
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.04 E-value=4.8e-10 Score=102.89 Aligned_cols=104 Identities=22% Similarity=0.392 Sum_probs=75.6
Q ss_pred cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc---ccccccccccccc--ccccchhhhh
Q psy7829 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST---NHIDLIANETIEI--IPHILDLCYL 443 (511)
Q Consensus 369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~---~~v~~i~~d~~~~--l~~~~d~i~~ 443 (511)
+.+.+|.+|||+|||||-.++.+++.++ +++|+++|++.+|.+.++++... .+++++.+|+..+ -+..||.+..
T Consensus 47 ~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~ 125 (238)
T COG2226 47 LGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTI 125 (238)
T ss_pred hCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEe
Confidence 4556999999999999999999999996 79999999999999998887763 4488898886543 3344554322
Q ss_pred cccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 444 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 444 ~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
.. +-+ .-...-....+++|.++|+|+++.+
T Consensus 126 ~f--glr---nv~d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 126 SF--GLR---NVTDIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred ee--hhh---cCCCHHHHHHHHHHhhcCCeEEEEE
Confidence 11 100 1112223457888889999987776
No 147
>KOG4300|consensus
Probab=99.04 E-value=3.9e-10 Score=97.93 Aligned_cols=95 Identities=22% Similarity=0.328 Sum_probs=75.8
Q ss_pred EEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeE-EEEccCCCCC-CCCCCccEEEe
Q psy7829 136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVR-IVEADAREGY-LPEAPYDVIYY 213 (511)
Q Consensus 136 ~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~-~~~~d~~~~~-~~~~~fD~I~~ 213 (511)
.|||+|||+|..-...-- .|..+|+++|.++.|-+.+.+.+.++ ...++. |+.+++++.+ .++++||.|++
T Consensus 79 ~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~-----k~~~~~~fvva~ge~l~~l~d~s~DtVV~ 151 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEK-----KPLQVERFVVADGENLPQLADGSYDTVVC 151 (252)
T ss_pred ceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhc-----cCcceEEEEeechhcCcccccCCeeeEEE
Confidence 589999999976543321 26778999999999999999998875 355676 9999998755 35799999998
Q ss_pred cCCCC------chHHHHHhhcccCcEEEEE
Q psy7829 214 GGCVS------EVPSRVLNQLKKGGRILAP 237 (511)
Q Consensus 214 ~~~~~------~~~~~~~~~LkpgG~l~~~ 237 (511)
..++. ..+.++.++|+|||++++-
T Consensus 152 TlvLCSve~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 152 TLVLCSVEDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred EEEEeccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 76653 3458999999999999983
No 148
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=1.6e-09 Score=101.40 Aligned_cols=113 Identities=21% Similarity=0.274 Sum_probs=84.0
Q ss_pred HHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccc---cccccccccccc
Q psy7829 360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHID---LIANETIEIIPH 436 (511)
Q Consensus 360 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~---~i~~d~~~~l~~ 436 (511)
+.-+++. +....+.+|||+|||.|.+++.+|+.. |+.+++-+|++...++.+++|+..++++ ++.++..+.+..
T Consensus 147 S~lLl~~--l~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~ 223 (300)
T COG2813 147 SRLLLET--LPPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEG 223 (300)
T ss_pred HHHHHHh--CCccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccc
Confidence 4445555 666767799999999999999999987 7899999999988888888888766654 567777777777
Q ss_pred cchhhhhcccCC--cEEEE-EcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 437 ILDLCYLNLHRG--AKVLE-IGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 437 ~~d~i~~~l~~~--~~vLD-~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
.||.|.+|.+-. ..+.+ ++ . .+.....+.|++||++..+
T Consensus 224 kfd~IisNPPfh~G~~v~~~~~--~-~~i~~A~~~L~~gGeL~iV 265 (300)
T COG2813 224 KFDLIISNPPFHAGKAVVHSLA--Q-EIIAAAARHLKPGGELWIV 265 (300)
T ss_pred cccEEEeCCCccCCcchhHHHH--H-HHHHHHHHhhccCCEEEEE
Confidence 899999887643 22221 11 0 2234556788999998777
No 149
>KOG2915|consensus
Probab=99.03 E-value=3.3e-09 Score=96.22 Aligned_cols=123 Identities=22% Similarity=0.254 Sum_probs=100.5
Q ss_pred CCcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCC
Q psy7829 110 YAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG 189 (511)
Q Consensus 110 ~~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~ 189 (511)
+..+|..+.-.+.++..|. ++||.+|+|-|+|+|.++.++++.++|.++++.+|+.+...+.|++.+++.+ ..+
T Consensus 84 hRTQI~Yt~Dia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg----i~~ 157 (314)
T KOG2915|consen 84 HRTQILYTPDIAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG----IGD 157 (314)
T ss_pred CcceEEecccHHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC----CCc
Confidence 3445555555677888887 9999999999999999999999999999999999999999999999999987 577
Q ss_pred CeEEEEccCCC-CCCC-CCCccEEEecCCCCchH-HHHHhhcccCcEEEEEE
Q psy7829 190 RVRIVEADARE-GYLP-EAPYDVIYYGGCVSEVP-SRVLNQLKKGGRILAPI 238 (511)
Q Consensus 190 ~v~~~~~d~~~-~~~~-~~~fD~I~~~~~~~~~~-~~~~~~LkpgG~l~~~~ 238 (511)
|+++.+-|+.. ++.. ...+|.|+.+.+.+|.. .-+.+.||.+|.-++++
T Consensus 158 ~vt~~hrDVc~~GF~~ks~~aDaVFLDlPaPw~AiPha~~~lk~~g~r~csF 209 (314)
T KOG2915|consen 158 NVTVTHRDVCGSGFLIKSLKADAVFLDLPAPWEAIPHAAKILKDEGGRLCSF 209 (314)
T ss_pred ceEEEEeecccCCccccccccceEEEcCCChhhhhhhhHHHhhhcCceEEec
Confidence 99999999874 3332 57899999998887653 45566899888555543
No 150
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.03 E-value=5.6e-09 Score=108.24 Aligned_cols=63 Identities=19% Similarity=0.200 Sum_probs=52.2
Q ss_pred CcEEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCCCceEEEechHHHHHhhC
Q psy7829 448 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDLIANETIEIIREF 511 (511)
Q Consensus 448 ~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~~~i~~i~~d~~~~~~~~ 511 (511)
+..+||+|||.|.++..+|+.. |.-.++|+ ...+..+.+++...++.|+.++++|+..+.+.|
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~ 413 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDL 413 (506)
T ss_pred CceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhc
Confidence 4589999999999999999885 88899999 666777777778888889999999987665543
No 151
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.03 E-value=7.8e-10 Score=110.60 Aligned_cols=102 Identities=19% Similarity=0.177 Sum_probs=79.4
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC----CCC
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL----PEA 206 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~ 206 (511)
..++.+|||+|||+|.+++.++.. ...+|+++|+|+.+++.|++|+..++. ..++++++++|+.+... ..+
T Consensus 218 ~~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl---~~~~v~~i~~D~~~~l~~~~~~~~ 292 (396)
T PRK15128 218 YVENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKL---DLSKAEFVRDDVFKLLRTYRDRGE 292 (396)
T ss_pred hcCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCC---CCCcEEEEEccHHHHHHHHHhcCC
Confidence 346889999999999998876643 345899999999999999999998761 22479999999875321 235
Q ss_pred CccEEEecCCCCc---------------hHHHHHhhcccCcEEEEE
Q psy7829 207 PYDVIYYGGCVSE---------------VPSRVLNQLKKGGRILAP 237 (511)
Q Consensus 207 ~fD~I~~~~~~~~---------------~~~~~~~~LkpgG~l~~~ 237 (511)
+||+|++++|... +...+.++|+|||.+++.
T Consensus 293 ~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~ 338 (396)
T PRK15128 293 KFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTF 338 (396)
T ss_pred CCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 7999999988621 113567899999999863
No 152
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.03 E-value=2.4e-09 Score=95.66 Aligned_cols=112 Identities=19% Similarity=0.209 Sum_probs=76.4
Q ss_pred CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHH---Hhhccccccccccccccccc-cccchhhhhcccCC
Q psy7829 373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIES---IANISTNHIDLIANETIEII-PHILDLCYLNLHRG 448 (511)
Q Consensus 373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~---~~~~~~~~v~~i~~d~~~~l-~~~~d~i~~~l~~~ 448 (511)
++.+|||+|||+|++++.++... ++++|+++|.++++++.+ .++.+.++++++++|..+.. ...+|.++.+.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~--- 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA--- 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh---
Confidence 58999999999999999998765 678999999998766544 44455667889988876532 23455544421
Q ss_pred cEEEEEcCCccHHHHHHHHHhCCCcEEEEh-----HHHHHHHHHHHHhcCC
Q psy7829 449 AKVLEIGSGSGYLATLMAHLVGPTGHVTGL-----EHMMDIAIESIANIST 494 (511)
Q Consensus 449 ~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~-----~~ml~~a~~~~~~~~~ 494 (511)
-...-.+...+.+.++|+|.++.. ..-+....++....|+
T Consensus 118 ------~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~ 162 (181)
T TIGR00138 118 ------LASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGV 162 (181)
T ss_pred ------hhCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCc
Confidence 012223445667889999998877 3334445555555655
No 153
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.01 E-value=1.7e-09 Score=96.82 Aligned_cols=98 Identities=20% Similarity=0.254 Sum_probs=71.5
Q ss_pred CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhh---ccccccccccccccccc-cccchhhhhccc
Q psy7829 371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIAN---ISTNHIDLIANETIEII-PHILDLCYLNLH 446 (511)
Q Consensus 371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~---~~~~~v~~i~~d~~~~l-~~~~d~i~~~l~ 446 (511)
++++.+|||+|||+|..++.+++.. +.++|+++|+++++++.++++ .+.++++++.++..+.. ...+|.++.+.
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~- 120 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRA- 120 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEcc-
Confidence 4468999999999999999999876 678999999998877765554 44556788888765432 22455554421
Q ss_pred CCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 447 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 447 ~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
......+...+++.++|+|.++.+
T Consensus 121 --------~~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 121 --------VASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred --------ccCHHHHHHHHHHhcCCCeEEEEE
Confidence 123345667788999999999888
No 154
>KOG2915|consensus
Probab=99.00 E-value=2.8e-09 Score=96.67 Aligned_cols=134 Identities=22% Similarity=0.335 Sum_probs=94.9
Q ss_pred HHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----cccccccccc----
Q psy7829 358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANE---- 429 (511)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d---- 429 (511)
.+++.++.+ +++.||.+|+|-|+|+|.++..+++.++|.|+++++|.+...+++|.+.++ ..|+++...|
T Consensus 92 ~Dia~I~~~--L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~ 169 (314)
T KOG2915|consen 92 PDIAMILSM--LEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGS 169 (314)
T ss_pred ccHHHHHHH--hcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccC
Confidence 457788887 999999999999999999999999999999999999999999999988776 3556665444
Q ss_pred ccccccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCC-CcEEEEhHHHHHHHHHHHHh---cCCCceEEEech
Q psy7829 430 TIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGP-TGHVTGLEHMMDIAIESIAN---ISTNHIDLIANE 503 (511)
Q Consensus 430 ~~~~l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~-~g~v~~~~~ml~~a~~~~~~---~~~~~i~~i~~d 503 (511)
....-...+|.++.+++..+..+ ..+++.++. ||+++.+...+|+.++.++. .|+..|+.+.-.
T Consensus 170 GF~~ks~~aDaVFLDlPaPw~Ai----------Pha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~i~~vEv~ 237 (314)
T KOG2915|consen 170 GFLIKSLKADAVFLDLPAPWEAI----------PHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIEIETVEVL 237 (314)
T ss_pred CccccccccceEEEcCCChhhhh----------hhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCceEEEEEee
Confidence 22222444555555555554443 334445544 44888887777777665544 455445554433
No 155
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.00 E-value=3.2e-09 Score=99.66 Aligned_cols=100 Identities=21% Similarity=0.247 Sum_probs=79.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC-CCCCCcc
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY-LPEAPYD 209 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD 209 (511)
..++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++...+ .+++++..|..... ...+.||
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~~~~~fD 116 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESG------LKIDYRQTTAEELAAEHPGQFD 116 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcC------CceEEEecCHHHhhhhcCCCcc
Confidence 4578899999999999999888753 469999999999999999887643 25788888876432 1347899
Q ss_pred EEEecCCCCch------HHHHHhhcccCcEEEEEEc
Q psy7829 210 VIYYGGCVSEV------PSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 210 ~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~~ 239 (511)
+|++...++++ .+.+.+.|+|||.+++...
T Consensus 117 ~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 117 VVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred EEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 99997766543 4788999999999998643
No 156
>PHA03411 putative methyltransferase; Provisional
Probab=99.00 E-value=3.8e-09 Score=98.36 Aligned_cols=77 Identities=23% Similarity=0.264 Sum_probs=63.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV 210 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 210 (511)
..++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.+++++. +++++++|+.+.. ....||+
T Consensus 62 ~~~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~~----------~v~~v~~D~~e~~-~~~kFDl 129 (279)
T PHA03411 62 AHCTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLLP----------EAEWITSDVFEFE-SNEKFDV 129 (279)
T ss_pred cccCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCc----------CCEEEECchhhhc-ccCCCcE
Confidence 3456799999999999999888875 34689999999999999988632 5889999988644 3368999
Q ss_pred EEecCCCCc
Q psy7829 211 IYYGGCVSE 219 (511)
Q Consensus 211 I~~~~~~~~ 219 (511)
|++++++.+
T Consensus 130 IIsNPPF~~ 138 (279)
T PHA03411 130 VISNPPFGK 138 (279)
T ss_pred EEEcCCccc
Confidence 999998854
No 157
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.99 E-value=2.1e-09 Score=102.23 Aligned_cols=105 Identities=22% Similarity=0.276 Sum_probs=76.8
Q ss_pred cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc------cccccccccccccc--ccccchh
Q psy7829 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS------TNHIDLIANETIEI--IPHILDL 440 (511)
Q Consensus 369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~------~~~v~~i~~d~~~~--l~~~~d~ 440 (511)
+.+.++.+|||+|||+|.++..+++..+++++|+|+|++++|++.++++.. ..+++++++|..+. .+..+|.
T Consensus 69 ~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~ 148 (261)
T PLN02233 69 SGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDA 148 (261)
T ss_pred hCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeE
Confidence 567889999999999999999999887777899999999999998876543 34688888875442 2234665
Q ss_pred hhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 441 CYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 441 i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
++.... +-..........++.+.|+|||.++.+
T Consensus 149 V~~~~~-----l~~~~d~~~~l~ei~rvLkpGG~l~i~ 181 (261)
T PLN02233 149 ITMGYG-----LRNVVDRLKAMQEMYRVLKPGSRVSIL 181 (261)
T ss_pred EEEecc-----cccCCCHHHHHHHHHHHcCcCcEEEEE
Confidence 544221 101113445667888999999998765
No 158
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.99 E-value=4.7e-09 Score=101.80 Aligned_cols=113 Identities=22% Similarity=0.346 Sum_probs=83.0
Q ss_pred CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---ccccccccccccc
Q psy7829 355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANETI 431 (511)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~~ 431 (511)
..|...+++++. +.++++++|||+|||+|+++..+++.+++.++|+++|+++++++.+++++ +..++.++++|..
T Consensus 64 ~~p~l~a~ll~~--L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~ 141 (322)
T PRK13943 64 SQPSLMALFMEW--VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGY 141 (322)
T ss_pred CcHHHHHHHHHh--cCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChh
Confidence 467778888887 77889999999999999999999998865578999999999888776654 4566778877765
Q ss_pred ccccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 432 EIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 432 ~~l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
+..+.. .+-+.|+ +++|...+...+.+.++|+|+++..
T Consensus 142 ~~~~~~--------~~fD~Ii-~~~g~~~ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 142 YGVPEF--------APYDVIF-VTVGVDEVPETWFTQLKEGGRVIVP 179 (322)
T ss_pred hccccc--------CCccEEE-ECCchHHhHHHHHHhcCCCCEEEEE
Confidence 433211 1122333 3345445666777888999987764
No 159
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.98 E-value=2.5e-09 Score=97.24 Aligned_cols=95 Identities=20% Similarity=0.364 Sum_probs=71.9
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC--CCCCC
Q psy7829 130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY--LPEAP 207 (511)
Q Consensus 130 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~ 207 (511)
.++++.+|||+|||+|.++..+++.. ...++++|+++++++.++++ +++++++|+.+.. ..+++
T Consensus 10 ~i~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~------------~~~~~~~d~~~~l~~~~~~s 75 (194)
T TIGR02081 10 LIPPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVAR------------GVNVIQGDLDEGLEAFPDKS 75 (194)
T ss_pred hcCCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHc------------CCeEEEEEhhhcccccCCCC
Confidence 35578899999999999999888764 34689999999999888642 4678888886522 23478
Q ss_pred ccEEEecCCCCchH---HHHHhhcccCcEEEEEE
Q psy7829 208 YDVIYYGGCVSEVP---SRVLNQLKKGGRILAPI 238 (511)
Q Consensus 208 fD~I~~~~~~~~~~---~~~~~~LkpgG~l~~~~ 238 (511)
||+|+++.+++++. ..+.+.+++++.+++.+
T Consensus 76 fD~Vi~~~~l~~~~d~~~~l~e~~r~~~~~ii~~ 109 (194)
T TIGR02081 76 FDYVILSQTLQATRNPEEILDEMLRVGRHAIVSF 109 (194)
T ss_pred cCEEEEhhHhHcCcCHHHHHHHHHHhCCeEEEEc
Confidence 99999999887663 34555667777776654
No 160
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.98 E-value=6.1e-09 Score=100.81 Aligned_cols=97 Identities=15% Similarity=0.132 Sum_probs=70.8
Q ss_pred HHHHHHHHHhhc-CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc
Q psy7829 119 QIADAAENLKLH-LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD 197 (511)
Q Consensus 119 ~~~~~~~~l~~~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 197 (511)
+...+++.+... ..++.+|||+|||+|.++..+++.. .+|+++|+|+.|++.+++++...+.......+++|..+|
T Consensus 129 ~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~D 205 (315)
T PLN02585 129 TVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAND 205 (315)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcc
Confidence 445556666421 1257899999999999999999862 479999999999999999987631100013468899998
Q ss_pred CCCCCCCCCCccEEEecCCCCchH
Q psy7829 198 AREGYLPEAPYDVIYYGGCVSEVP 221 (511)
Q Consensus 198 ~~~~~~~~~~fD~I~~~~~~~~~~ 221 (511)
+... .++||+|++..++.+++
T Consensus 206 l~~l---~~~fD~Vv~~~vL~H~p 226 (315)
T PLN02585 206 LESL---SGKYDTVTCLDVLIHYP 226 (315)
T ss_pred hhhc---CCCcCEEEEcCEEEecC
Confidence 7542 37899999988876654
No 161
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.97 E-value=5.9e-09 Score=97.66 Aligned_cols=92 Identities=16% Similarity=0.223 Sum_probs=69.7
Q ss_pred HHHHHHHHHhh-cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc
Q psy7829 119 QIADAAENLKL-HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD 197 (511)
Q Consensus 119 ~~~~~~~~l~~-~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 197 (511)
....+++.+.. ...++.+|||+|||+|.++..+++.. .+|+++|+|+.+++.|++++...+ ..+++++..+|
T Consensus 48 ~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~----~~~~i~~~~~d 120 (230)
T PRK07580 48 MRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAG----LAGNITFEVGD 120 (230)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcC----CccCcEEEEcC
Confidence 33445555542 13567899999999999999998764 359999999999999999987753 22579999999
Q ss_pred CCCCCCCCCCccEEEecCCCCch
Q psy7829 198 AREGYLPEAPYDVIYYGGCVSEV 220 (511)
Q Consensus 198 ~~~~~~~~~~fD~I~~~~~~~~~ 220 (511)
+.. ..++||+|++..+++++
T Consensus 121 ~~~---~~~~fD~v~~~~~l~~~ 140 (230)
T PRK07580 121 LES---LLGRFDTVVCLDVLIHY 140 (230)
T ss_pred chh---ccCCcCEEEEcchhhcC
Confidence 532 24789999998877543
No 162
>PRK01581 speE spermidine synthase; Validated
Probab=98.97 E-value=4.3e-09 Score=101.79 Aligned_cols=105 Identities=25% Similarity=0.242 Sum_probs=78.4
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH--HhccCCCcCCCCCeEEEEccCCCCCC-CCCCc
Q psy7829 132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN--ISKGNKDLLDSGRVRIVEADAREGYL-PEAPY 208 (511)
Q Consensus 132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~--~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~f 208 (511)
....+||++|||.|..+..+.+.. +..+|+++|+++++++.|++. +...+.+.+..++++++.+|+.+... ..+.|
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 456799999999999888888753 567899999999999999972 11111011245789999999875322 24679
Q ss_pred cEEEecCCCC-----------chHHHHHhhcccCcEEEEE
Q psy7829 209 DVIYYGGCVS-----------EVPSRVLNQLKKGGRILAP 237 (511)
Q Consensus 209 D~I~~~~~~~-----------~~~~~~~~~LkpgG~l~~~ 237 (511)
|+|+++.+-+ .+.+.+.+.|+|||.+++-
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9999986432 1347889999999999875
No 163
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=7.2e-09 Score=89.59 Aligned_cols=90 Identities=24% Similarity=0.245 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHh-hcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEE
Q psy7829 117 PNQIADAAENLK-LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE 195 (511)
Q Consensus 117 p~~~~~~~~~l~-~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~ 195 (511)
+.+.+.++.... ...-.|..|+|+|||||.+++..+-.. + .+|+++|+++++++.+++|+++ ...++.|++
T Consensus 28 ~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lG-a-~~V~~vdiD~~a~ei~r~N~~~------l~g~v~f~~ 99 (198)
T COG2263 28 APLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLG-A-SRVLAVDIDPEALEIARANAEE------LLGDVEFVV 99 (198)
T ss_pred hHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcC-C-cEEEEEecCHHHHHHHHHHHHh------hCCceEEEE
Confidence 445555554442 122367789999999999999887764 3 6899999999999999999998 355899999
Q ss_pred ccCCCCCCCCCCccEEEecCCC
Q psy7829 196 ADAREGYLPEAPYDVIYYGGCV 217 (511)
Q Consensus 196 ~d~~~~~~~~~~fD~I~~~~~~ 217 (511)
+|+.+. .+.+|.++.|+++
T Consensus 100 ~dv~~~---~~~~dtvimNPPF 118 (198)
T COG2263 100 ADVSDF---RGKFDTVIMNPPF 118 (198)
T ss_pred cchhhc---CCccceEEECCCC
Confidence 999763 3679999999988
No 164
>PLN02366 spermidine synthase
Probab=98.97 E-value=6.1e-09 Score=100.46 Aligned_cols=103 Identities=23% Similarity=0.224 Sum_probs=80.5
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC--CCCCcc
Q psy7829 132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL--PEAPYD 209 (511)
Q Consensus 132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD 209 (511)
.++.+||+||||.|..+..+++.. +..+|+.+|+++.+++.|++.+...+.+ +..++++++.+|+..... +.+.||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~-~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVG-FDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccc-cCCCceEEEEChHHHHHhhccCCCCC
Confidence 467899999999999999998763 4568999999999999999988653211 245689999999864221 236799
Q ss_pred EEEecCCCC----------chHHHHHhhcccCcEEEE
Q psy7829 210 VIYYGGCVS----------EVPSRVLNQLKKGGRILA 236 (511)
Q Consensus 210 ~I~~~~~~~----------~~~~~~~~~LkpgG~l~~ 236 (511)
+|+++..-+ .+.+.+.+.|+|||.++.
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 999986542 235788999999999976
No 165
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.96 E-value=7.2e-09 Score=92.44 Aligned_cols=112 Identities=22% Similarity=0.174 Sum_probs=81.4
Q ss_pred ccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCce---------EEEEeCCHHHHHHHHHHHhccCC
Q psy7829 113 VMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGK---------VIGVEHIPELIEASLRNISKGNK 183 (511)
Q Consensus 113 ~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~---------v~~iD~~~~~~~~a~~~~~~~~~ 183 (511)
...+|.+.+.++.+.. .+++..|||-.||+|.+.+..+... .... ++|.|+++.+++.|++|++..+
T Consensus 10 a~L~~~lA~~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~-~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag- 85 (179)
T PF01170_consen 10 APLRPTLAAALLNLAG--WRPGDVVLDPFCGSGTILIEAALMG-ANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG- 85 (179)
T ss_dssp TSS-HHHHHHHHHHTT----TTS-EEETT-TTSHHHHHHHHHH-TTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-
T ss_pred CCCCHHHHHHHHHHhC--CCCCCEEeecCCCCCHHHHHHHHHh-hCcccccccccccEEecCCCHHHHHHHHHHHHhcc-
Confidence 3446777777777665 7789999999999999999888776 4444 8999999999999999999876
Q ss_pred CcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCC--------------chHHHHHhhcccC
Q psy7829 184 DLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVS--------------EVPSRVLNQLKKG 231 (511)
Q Consensus 184 ~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~--------------~~~~~~~~~Lkpg 231 (511)
....+.+.+.|+.+.....+++|.|++++++- .+.+++.+.|++.
T Consensus 86 ---~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~ 144 (179)
T PF01170_consen 86 ---VEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPR 144 (179)
T ss_dssp ----CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTC
T ss_pred ---cCCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCC
Confidence 34568999999987554457899999999982 2236778889993
No 166
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.96 E-value=2.4e-09 Score=101.95 Aligned_cols=144 Identities=20% Similarity=0.230 Sum_probs=98.0
Q ss_pred ccccCCCCCCCCCceeeeccccccccCCCCCCCCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcE
Q psy7829 321 KWIPQPPGYTTPGEITTRDKYGRLVHGSAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGH 400 (511)
Q Consensus 321 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~ 400 (511)
+.+.+..+|...++...+..+|+.... |...+.+..++.. +.+.++.+|||||||+|..+..+++..+ .+
T Consensus 8 ~~~~~~~~y~~~~~~~~e~~~g~~~~~------~gg~~~~~~~l~~--l~l~~~~~VLDiGcG~G~~a~~la~~~~--~~ 77 (263)
T PTZ00098 8 ITYLENNQYSDEGIKAYEFIFGEDYIS------SGGIEATTKILSD--IELNENSKVLDIGSGLGGGCKYINEKYG--AH 77 (263)
T ss_pred hhhhhccccccccchhHHHHhCCCCCC------CCchHHHHHHHHh--CCCCCCCEEEEEcCCCChhhHHHHhhcC--CE
Confidence 455666778888887777777643332 3444556677776 7889999999999999999999987653 79
Q ss_pred EEEEcCCHHHHHHHHhhcc-cccccccccccccc--ccccchhhhhcccCCcEEEEEcC-CccHHHHHHHHHhCCCcEEE
Q psy7829 401 VTGLEHMMDIAIESIANIS-TNHIDLIANETIEI--IPHILDLCYLNLHRGAKVLEIGS-GSGYLATLMAHLVGPTGHVT 476 (511)
Q Consensus 401 v~~id~~~~~~~~~~~~~~-~~~v~~i~~d~~~~--l~~~~d~i~~~l~~~~~vLD~~~-g~g~~~~~l~~~l~~~g~v~ 476 (511)
|+++|++++++..++++.. ..++.++.+|.... .+..+|.++... .++.++. ..-.+...+++.|+|+|.++
T Consensus 78 v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~----~l~h~~~~d~~~~l~~i~r~LkPGG~lv 153 (263)
T PTZ00098 78 VHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRD----AILHLSYADKKKLFEKCYKWLKPNGILL 153 (263)
T ss_pred EEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhh----hHHhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 9999999999998887765 34577777765432 223455544311 0010110 22345567788889999987
Q ss_pred Eh
Q psy7829 477 GL 478 (511)
Q Consensus 477 ~~ 478 (511)
..
T Consensus 154 i~ 155 (263)
T PTZ00098 154 IT 155 (263)
T ss_pred EE
Confidence 65
No 167
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.96 E-value=4.9e-09 Score=96.21 Aligned_cols=134 Identities=21% Similarity=0.287 Sum_probs=94.7
Q ss_pred hcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccc----ccccccccccccc----ccch
Q psy7829 368 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH----IDLIANETIEIIP----HILD 439 (511)
Q Consensus 368 ~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~----v~~i~~d~~~~l~----~~~d 439 (511)
...+....+|||+|||+|..++.+|++. +..++++||+++++++.|.+|+..++ ++++++|...+.. ..+|
T Consensus 39 ~~~~~~~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD 117 (248)
T COG4123 39 FAPVPKKGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFD 117 (248)
T ss_pred hcccccCCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccC
Confidence 4666778999999999999999999997 45999999999999999999988644 6788888544432 2367
Q ss_pred hhhhcccCCcEEE-------------EEcCCccHHHHHHHHHhCCCcEEEEh--HHHHHHHHHHHHhcCC--CceEEEec
Q psy7829 440 LCYLNLHRGAKVL-------------EIGSGSGYLATLMAHLVGPTGHVTGL--EHMMDIAIESIANIST--NHIDLIAN 502 (511)
Q Consensus 440 ~i~~~l~~~~~vL-------------D~~~g~g~~~~~l~~~l~~~g~v~~~--~~ml~~a~~~~~~~~~--~~i~~i~~ 502 (511)
.+.+|.+....-- .+.|.--.+....++.++|+|.+..+ ++-+...-..+.+.++ .++.+|+.
T Consensus 118 ~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~i~~V~p 197 (248)
T COG4123 118 LIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKRIQFVYP 197 (248)
T ss_pred EEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 7777654322111 12344555566677889999999988 4444444444455444 56777654
No 168
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.96 E-value=2e-09 Score=116.11 Aligned_cols=103 Identities=17% Similarity=0.170 Sum_probs=82.2
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCccE
Q psy7829 132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPYDV 210 (511)
Q Consensus 132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~ 210 (511)
.++.+|||+|||+|.+++.++... ..+|+++|+|+.+++.|++|++.++. ...+++++++|+.+... ..++||+
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~G--a~~V~~vD~s~~al~~a~~N~~~ng~---~~~~v~~i~~D~~~~l~~~~~~fDl 611 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGG--AKSTTTVDMSNTYLEWAERNFALNGL---SGRQHRLIQADCLAWLKEAREQFDL 611 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCC---CccceEEEEccHHHHHHHcCCCcCE
Confidence 368899999999999999999853 34799999999999999999998762 22579999999865321 1368999
Q ss_pred EEecCCCC-----------------chHHHHHhhcccCcEEEEEEc
Q psy7829 211 IYYGGCVS-----------------EVPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 211 I~~~~~~~-----------------~~~~~~~~~LkpgG~l~~~~~ 239 (511)
|+++++.. .+...+.+.|+|||.+++...
T Consensus 612 IilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 612 IFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred EEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 99998751 123567889999999988654
No 169
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.95 E-value=8.3e-09 Score=95.27 Aligned_cols=108 Identities=24% Similarity=0.383 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---ccccccccccccc
Q psy7829 355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANETI 431 (511)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~~ 431 (511)
.+|..+++++.. +.+.++.+|||+|||+|+.+..+++.. ++|+++|+++++++.+++++ +..+++++.+|..
T Consensus 62 ~~p~~~~~l~~~--l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~ 136 (212)
T PRK00312 62 SQPYMVARMTEL--LELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGW 136 (212)
T ss_pred CcHHHHHHHHHh--cCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcc
Confidence 567888888887 788899999999999999999998876 58999999998888777665 4556788887764
Q ss_pred cccc--ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 432 EIIP--HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 432 ~~l~--~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
+..+ ..+|.++. .+....+...+.+.|+|+|.++..
T Consensus 137 ~~~~~~~~fD~I~~-----------~~~~~~~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 137 KGWPAYAPFDRILV-----------TAAAPEIPRALLEQLKEGGILVAP 174 (212)
T ss_pred cCCCcCCCcCEEEE-----------ccCchhhhHHHHHhcCCCcEEEEE
Confidence 4332 23443332 222234556778889999998765
No 170
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.95 E-value=8.5e-09 Score=96.17 Aligned_cols=113 Identities=18% Similarity=0.226 Sum_probs=84.2
Q ss_pred HHHHHHHHHhhc--CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829 119 QIADAAENLKLH--LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA 196 (511)
Q Consensus 119 ~~~~~~~~l~~~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~ 196 (511)
....+.+.+... ...+.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++...+ ..++++...
T Consensus 29 ~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~-----~~~~~~~~~ 100 (224)
T TIGR01983 29 RLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDP-----LLKIEYRCT 100 (224)
T ss_pred HHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEeC
Confidence 344555555421 1247799999999999999888753 359999999999999999887643 236888888
Q ss_pred cCCCCCCC-CCCccEEEecCCCCc------hHHHHHhhcccCcEEEEEEc
Q psy7829 197 DAREGYLP-EAPYDVIYYGGCVSE------VPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 197 d~~~~~~~-~~~fD~I~~~~~~~~------~~~~~~~~LkpgG~l~~~~~ 239 (511)
|+.+.... .++||+|++...+++ +++++.+.|+|||.+++...
T Consensus 101 d~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 101 SVEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred CHHHhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 87653322 368999999866543 34788999999999987543
No 171
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.95 E-value=7.3e-09 Score=83.29 Aligned_cols=95 Identities=26% Similarity=0.370 Sum_probs=76.2
Q ss_pred EEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCccEEEec
Q psy7829 136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPYDVIYYG 214 (511)
Q Consensus 136 ~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I~~~ 214 (511)
+++|+|||+|..+..+++ . ...+++++|+++..++.+++..... ...+++++..|..+... ..++||+|+++
T Consensus 1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~i~~~ 73 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAAL-----LADNVEVLKGDAEELPPEADESFDVIISD 73 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhcc-----cccceEEEEcChhhhccccCCceEEEEEc
Confidence 489999999999999988 2 5678999999999999988543332 35678999999876443 34789999999
Q ss_pred CCCCc-------hHHHHHhhcccCcEEEEE
Q psy7829 215 GCVSE-------VPSRVLNQLKKGGRILAP 237 (511)
Q Consensus 215 ~~~~~-------~~~~~~~~LkpgG~l~~~ 237 (511)
.+++. +.+.+.+.|+|||.+++.
T Consensus 74 ~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 74 PPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred cceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 88854 336788999999999875
No 172
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.95 E-value=3.8e-10 Score=107.55 Aligned_cols=116 Identities=22% Similarity=0.243 Sum_probs=76.7
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccccc--ccc
Q psy7829 353 GPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIA--NET 430 (511)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~--~d~ 430 (511)
|.+++..+..++++..-...+|.+|||+|||||.+++.+++.. . .+|+|+|+++..++.+++|...+++.-.. ...
T Consensus 141 GTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klG-A-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~ 218 (295)
T PF06325_consen 141 GTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLG-A-KKVVAIDIDPLAVEAARENAELNGVEDRIEVSLS 218 (295)
T ss_dssp -SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTT-B-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCT
T ss_pred cCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcC-C-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEe
Confidence 4556666766666644456789999999999999999998765 3 78999999999999999998877654311 112
Q ss_pred cccccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 431 IEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 431 ~~~l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
.+.....+|.++.|+..+-.+ .+...+.+.++|+|.++..
T Consensus 219 ~~~~~~~~dlvvANI~~~vL~--------~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 219 EDLVEGKFDLVVANILADVLL--------ELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp SCTCCS-EEEEEEES-HHHHH--------HHHHHCHHHEEEEEEEEEE
T ss_pred cccccccCCEEEECCCHHHHH--------HHHHHHHHhhCCCCEEEEc
Confidence 222335566666665322110 2334556778999988744
No 173
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.94 E-value=9.7e-10 Score=102.09 Aligned_cols=105 Identities=19% Similarity=0.341 Sum_probs=65.4
Q ss_pred cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cccccccccccccc--ccccchhhhh
Q psy7829 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEI--IPHILDLCYL 443 (511)
Q Consensus 369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~--l~~~~d~i~~ 443 (511)
+...+|.+|||+|||||.++..+++..+++++|+++|++++|.+.++++.. ..+++++++|+... -+..+|.+..
T Consensus 43 ~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~ 122 (233)
T PF01209_consen 43 LGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTC 122 (233)
T ss_dssp HT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEE
T ss_pred cCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEH
Confidence 567889999999999999999999988888999999999999999887654 45889998886443 3344554432
Q ss_pred cccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 444 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 444 ~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
...-. .+ +.......++.+.|+|||+++.+
T Consensus 123 ~fglr-n~----~d~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 123 SFGLR-NF----PDRERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp ES-GG-G-----SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred HhhHH-hh----CCHHHHHHHHHHHcCCCeEEEEe
Confidence 21100 00 12233457788888888888776
No 174
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.93 E-value=3.8e-09 Score=92.09 Aligned_cols=101 Identities=17% Similarity=0.286 Sum_probs=72.1
Q ss_pred CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhh---cccccccccccccccccc----ccchhhhhc
Q psy7829 372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIAN---ISTNHIDLIANETIEIIP----HILDLCYLN 444 (511)
Q Consensus 372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~---~~~~~v~~i~~d~~~~l~----~~~d~i~~~ 444 (511)
+.+.+|||+|||+|.++..+++..+++++++++|+++++++.+.++ .+..+++++++|..+ ++ ..+|.++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEc
Confidence 4688999999999999999997666789999999999999988774 556789999988776 44 234544332
Q ss_pred ccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 445 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 445 l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
..- ..-...-.+...+.+.++++|.++..
T Consensus 81 ~~l-----~~~~~~~~~l~~~~~~lk~~G~~i~~ 109 (152)
T PF13847_consen 81 GVL-----HHFPDPEKVLKNIIRLLKPGGILIIS 109 (152)
T ss_dssp STG-----GGTSHHHHHHHHHHHHEEEEEEEEEE
T ss_pred Cch-----hhccCHHHHHHHHHHHcCCCcEEEEE
Confidence 110 00111223456778889999988766
No 175
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.93 E-value=7.4e-09 Score=103.63 Aligned_cols=119 Identities=12% Similarity=0.036 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHhhc--CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEE
Q psy7829 117 PNQIADAAENLKLH--LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIV 194 (511)
Q Consensus 117 p~~~~~~~~~l~~~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~ 194 (511)
+.....+.+.+... ..++.+|||+|||+|.+++.++... .+|+++|+++.+++.|++|++.++ .++++|+
T Consensus 215 ~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~-----~~~~~~~ 286 (374)
T TIGR02085 215 PKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLG-----LDNLSFA 286 (374)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcC-----CCcEEEE
Confidence 33444444433322 2356799999999999999999653 479999999999999999998864 4589999
Q ss_pred EccCCCCCC-CCCCccEEEecCCCCchHHH---HHhhcccCcEEEEEEccCCC
Q psy7829 195 EADAREGYL-PEAPYDVIYYGGCVSEVPSR---VLNQLKKGGRILAPIGPMDD 243 (511)
Q Consensus 195 ~~d~~~~~~-~~~~fD~I~~~~~~~~~~~~---~~~~LkpgG~l~~~~~~~~~ 243 (511)
.+|+.+... ...+||+|+++++...+... ....++|++.+++++.+..-
T Consensus 287 ~~d~~~~~~~~~~~~D~vi~DPPr~G~~~~~l~~l~~~~p~~ivyvsc~p~Tl 339 (374)
T TIGR02085 287 ALDSAKFATAQMSAPELVLVNPPRRGIGKELCDYLSQMAPKFILYSSCNAQTM 339 (374)
T ss_pred ECCHHHHHHhcCCCCCEEEECCCCCCCcHHHHHHHHhcCCCeEEEEEeCHHHH
Confidence 999864322 12469999999987654322 23457999999999876543
No 176
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.93 E-value=5.1e-09 Score=97.88 Aligned_cols=115 Identities=18% Similarity=0.296 Sum_probs=83.9
Q ss_pred hcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cc-cccccccccccc----------
Q psy7829 368 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TN-HIDLIANETIEI---------- 433 (511)
Q Consensus 368 ~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~-~v~~i~~d~~~~---------- 433 (511)
++.+++|.+|||||||.|.+++.+|+.++ .+|+|+++|+++.+.+.+++. .. +++++..|..+.
T Consensus 67 kl~L~~G~~lLDiGCGWG~l~~~aA~~y~--v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDrIvSv 144 (283)
T COG2230 67 KLGLKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDRIVSV 144 (283)
T ss_pred hcCCCCCCEEEEeCCChhHHHHHHHHHcC--CEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccccceeeeh
Confidence 48999999999999999999999999986 899999999988887766544 33 566654432111
Q ss_pred ----------ccccchhhhhcccCCcEEEEE--cCC--cc-HHHHHHHHHhCCCcEEEEhHHHHHH
Q psy7829 434 ----------IPHILDLCYLNLHRGAKVLEI--GSG--SG-YLATLMAHLVGPTGHVTGLEHMMDI 484 (511)
Q Consensus 434 ----------l~~~~d~i~~~l~~~~~vLD~--~~g--~g-~~~~~l~~~l~~~g~v~~~~~ml~~ 484 (511)
.+..|..+...++++++++=. +.. .. .....+.+++.|||.+..++.+.+.
T Consensus 145 gmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~ 210 (283)
T COG2230 145 GMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILEL 210 (283)
T ss_pred hhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHH
Confidence 234566677788898877722 221 11 4566778888999999877555554
No 177
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.93 E-value=7.5e-09 Score=86.72 Aligned_cols=109 Identities=22% Similarity=0.258 Sum_probs=72.7
Q ss_pred HHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---cccccccccccccccc
Q psy7829 358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANETIEII 434 (511)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~~~~l 434 (511)
.....++.. +.+.++.+|||+|||+|..+..+++.. |..+|+++|+++.+++.+++++ +..+++++.++....+
T Consensus 6 ~~~~~~~~~--~~~~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 82 (124)
T TIGR02469 6 EVRALTLSK--LRLRPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEAL 82 (124)
T ss_pred HHHHHHHHH--cCCCCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccC
Confidence 344445555 677788999999999999999999887 4589999999988888766554 3456777766643222
Q ss_pred ---cccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEE
Q psy7829 435 ---PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG 477 (511)
Q Consensus 435 ---~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~ 477 (511)
...+|.++...... -.-.+...+.+.++|+|.++.
T Consensus 83 ~~~~~~~D~v~~~~~~~--------~~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 83 EDSLPEPDRVFIGGSGG--------LLQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred hhhcCCCCEEEECCcch--------hHHHHHHHHHHHcCCCCEEEE
Confidence 12334333211000 012356677888999998864
No 178
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.92 E-value=6e-09 Score=99.66 Aligned_cols=103 Identities=21% Similarity=0.175 Sum_probs=78.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCccEE
Q psy7829 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPYDVI 211 (511)
Q Consensus 133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I 211 (511)
.+.+||+||||+|..+..+++.. +..+++++|+++.+++.+++++...+. .+..++++++.+|+..... ..++||+|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~-~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAG-SYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcc-cccCCceEEEECchHHHHHhCCCCccEE
Confidence 45699999999999998888764 456899999999999999998765321 1234678999988764221 13689999
Q ss_pred EecCCCC----------chHHHHHhhcccCcEEEEE
Q psy7829 212 YYGGCVS----------EVPSRVLNQLKKGGRILAP 237 (511)
Q Consensus 212 ~~~~~~~----------~~~~~~~~~LkpgG~l~~~ 237 (511)
+++...+ .+.+.+.+.|+|||.+++.
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 9976522 2346889999999999985
No 179
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.92 E-value=5.1e-09 Score=107.37 Aligned_cols=102 Identities=20% Similarity=0.210 Sum_probs=80.4
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC----CCCC
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY----LPEA 206 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~ 206 (511)
+.++.+|||+|||+|.+++.+++.. .+|+++|+++.+++.|++|+..++ .+|++|+.+|+.+.. ....
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~-----~~nv~~~~~d~~~~l~~~~~~~~ 361 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNG-----IANVEFLAGTLETVLPKQPWAGQ 361 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhC-----CCceEEEeCCHHHHHHHHHhcCC
Confidence 4567899999999999999999874 369999999999999999998864 568999999986422 1235
Q ss_pred CccEEEecCCCCch----HHHHHhhcccCcEEEEEEccC
Q psy7829 207 PYDVIYYGGCVSEV----PSRVLNQLKKGGRILAPIGPM 241 (511)
Q Consensus 207 ~fD~I~~~~~~~~~----~~~~~~~LkpgG~l~~~~~~~ 241 (511)
+||+|+++++...+ .+.+ ..++|++.+++++.+.
T Consensus 362 ~~D~vi~dPPr~G~~~~~l~~l-~~l~~~~ivyvsc~p~ 399 (431)
T TIGR00479 362 IPDVLLLDPPRKGCAAEVLRTI-IELKPERIVYVSCNPA 399 (431)
T ss_pred CCCEEEECcCCCCCCHHHHHHH-HhcCCCEEEEEcCCHH
Confidence 79999999886442 2333 3588999888877644
No 180
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.92 E-value=5.7e-09 Score=94.24 Aligned_cols=100 Identities=26% Similarity=0.316 Sum_probs=79.5
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC---CCCCCCccE
Q psy7829 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG---YLPEAPYDV 210 (511)
Q Consensus 134 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~fD~ 210 (511)
...+||||||.|.+...+|... |+..++|+|++...+..+.+++... ..+|+.++++|+... ..+++++|.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~-----~l~Nv~~~~~da~~~l~~~~~~~~v~~ 91 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKR-----GLKNVRFLRGDARELLRRLFPPGSVDR 91 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHH-----TTSSEEEEES-CTTHHHHHSTTTSEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhh-----cccceEEEEccHHHHHhhcccCCchhe
Confidence 3489999999999999999997 8999999999999999999998885 478999999998752 234589999
Q ss_pred EEecCCCCch--------------HHHHHhhcccCcEEEEEEc
Q psy7829 211 IYYGGCVSEV--------------PSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 211 I~~~~~~~~~--------------~~~~~~~LkpgG~l~~~~~ 239 (511)
|+++.+-++. +..+.+.|+|||.|.+..+
T Consensus 92 i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 92 IYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp EEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred EEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 9998876433 3678999999999988654
No 181
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.91 E-value=1.8e-08 Score=92.26 Aligned_cols=118 Identities=19% Similarity=0.203 Sum_probs=84.2
Q ss_pred chhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhc------cCC-CcCC
Q psy7829 115 NAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISK------GNK-DLLD 187 (511)
Q Consensus 115 ~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~------~~~-~~~~ 187 (511)
+.|.+...... +. ..++.+||+.|||.|.-+..||.+.. +|+|+|+|+.+++.+.+.... .+. ....
T Consensus 28 pnp~L~~~~~~-l~--~~~~~rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~ 101 (226)
T PRK13256 28 PNEFLVKHFSK-LN--INDSSVCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYK 101 (226)
T ss_pred CCHHHHHHHHh-cC--CCCCCeEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHHcCCCcceecccccceec
Confidence 45555554433 32 44678999999999999999999753 499999999999998663210 000 0012
Q ss_pred CCCeEEEEccCCCCCC---CCCCccEEEecCCCCchH--------HHHHhhcccCcEEEEEE
Q psy7829 188 SGRVRIVEADAREGYL---PEAPYDVIYYGGCVSEVP--------SRVLNQLKKGGRILAPI 238 (511)
Q Consensus 188 ~~~v~~~~~d~~~~~~---~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~l~~~~ 238 (511)
..++++.++|+.+... ..+.||+|+-...+..++ +.+.++|+|||.+++..
T Consensus 102 ~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 102 GDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred cCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 3479999999987432 136899999877776654 57889999999998854
No 182
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.90 E-value=1e-08 Score=98.39 Aligned_cols=105 Identities=19% Similarity=0.284 Sum_probs=84.3
Q ss_pred cchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEE
Q psy7829 114 MNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI 193 (511)
Q Consensus 114 ~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~ 193 (511)
+..+.+...+++.+. +.++.+|||||||+|.++..+++.. .+|+++|+++.+++.+++++...+ ..+++++
T Consensus 19 L~d~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~----~~~~v~i 89 (294)
T PTZ00338 19 LKNPLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSP----LASKLEV 89 (294)
T ss_pred cCCHHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcC----CCCcEEE
Confidence 356778888888776 7789999999999999999999874 369999999999999999987643 2468999
Q ss_pred EEccCCCCCCCCCCccEEEecCCCCchHHHHHhhcc
Q psy7829 194 VEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLK 229 (511)
Q Consensus 194 ~~~d~~~~~~~~~~fD~I~~~~~~~~~~~~~~~~Lk 229 (511)
+++|+.+... ..||.|+++.++..-...+.++|.
T Consensus 90 i~~Dal~~~~--~~~d~VvaNlPY~Istpil~~ll~ 123 (294)
T PTZ00338 90 IEGDALKTEF--PYFDVCVANVPYQISSPLVFKLLA 123 (294)
T ss_pred EECCHhhhcc--cccCEEEecCCcccCcHHHHHHHh
Confidence 9999976432 468999999888654455555553
No 183
>PLN02476 O-methyltransferase
Probab=98.90 E-value=2.3e-09 Score=100.96 Aligned_cols=111 Identities=14% Similarity=0.212 Sum_probs=77.5
Q ss_pred HHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---c-ccccccccccccc
Q psy7829 358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---T-NHIDLIANETIEI 433 (511)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~-~~v~~i~~d~~~~ 433 (511)
.....++.+ .+...++.+|||||||+||.++++|+.++++++|+++|.+++.++.+++++. . ++++++.+++.+.
T Consensus 104 ~~~g~lL~~-L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~ 182 (278)
T PLN02476 104 PDQAQLLAM-LVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAES 182 (278)
T ss_pred HHHHHHHHH-HHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH
Confidence 344454544 3566789999999999999999999988778999999999988888777764 3 3688889988776
Q ss_pred ccc--------cchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEE
Q psy7829 434 IPH--------ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG 477 (511)
Q Consensus 434 l~~--------~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~ 477 (511)
++. .||.++.+..++. .-.....+.+.++|||.|+.
T Consensus 183 L~~l~~~~~~~~FD~VFIDa~K~~--------Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 183 LKSMIQNGEGSSYDFAFVDADKRM--------YQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred HHHHHhcccCCCCCEEEECCCHHH--------HHHHHHHHHHhcCCCcEEEE
Confidence 653 2444443332211 11223455677888877653
No 184
>PTZ00146 fibrillarin; Provisional
Probab=98.89 E-value=1.7e-08 Score=95.12 Aligned_cols=138 Identities=17% Similarity=0.242 Sum_probs=84.4
Q ss_pred CHHHHHHHHH-HhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc-ccccccccccccccc
Q psy7829 356 SERSIAHILD-LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI-STNHIDLIANETIEI 433 (511)
Q Consensus 356 ~~~~~~~~~~-~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~-~~~~v~~i~~d~~~~ 433 (511)
..+..+.++. +..+.++++.+|||+|||+|+++..+|..+++.++|+++|+++.+.+...+.. ...|+.++.+|....
T Consensus 114 rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p 193 (293)
T PTZ00146 114 RSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYP 193 (293)
T ss_pred ccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccCh
Confidence 3455544433 22367889999999999999999999999988899999999976443222211 126777777775321
Q ss_pred -----ccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh------------HHHHHHHHHHHHhcCCCc
Q psy7829 434 -----IPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL------------EHMMDIAIESIANISTNH 496 (511)
Q Consensus 434 -----l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~------------~~ml~~a~~~~~~~~~~~ 496 (511)
+...+|.++.+... .| -.-.+...+.+.|+|+|+++.. +..++.-.+.+++.++..
T Consensus 194 ~~y~~~~~~vDvV~~Dva~----pd---q~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~ 266 (293)
T PTZ00146 194 QKYRMLVPMVDVIFADVAQ----PD---QARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKP 266 (293)
T ss_pred hhhhcccCCCCEEEEeCCC----cc---hHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCce
Confidence 12234555443321 10 0112234566789999998873 233332235666666644
Q ss_pred eEEE
Q psy7829 497 IDLI 500 (511)
Q Consensus 497 i~~i 500 (511)
++.+
T Consensus 267 ~e~v 270 (293)
T PTZ00146 267 KEQL 270 (293)
T ss_pred EEEE
Confidence 4443
No 185
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.88 E-value=3.9e-10 Score=107.98 Aligned_cols=176 Identities=20% Similarity=0.254 Sum_probs=116.5
Q ss_pred CCCCCCCCcccCCCccHHHHHHHHHHcCCCCCH--HHHHHHHh--CCCCCccCCCCCCCcccccCCCcccchhHHHHHHH
Q psy7829 49 IPPPDNLNHFKNEGTCQTDLVNHLRDIGKIRTE--RVAQAFYK--VDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAA 124 (511)
Q Consensus 49 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~a~~~--~~r~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~ 124 (511)
..++...++.|+...+...+.+.|...|+...+ ....++.. ...........|.++.+.++ -.-.....
T Consensus 6 n~~~~~~iRvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~G~~~vQ-------d~sS~l~~ 78 (283)
T PF01189_consen 6 NCPPPVTIRVNTLKISREELLEELEEEGIQLEPIPRSPDALRVIGKSPYSICSLPEFKNGLFYVQ-------DESSQLVA 78 (283)
T ss_dssp TS--GEEEEE-TTTSSHHHHHHHHHHTTHEEEEETSTTCEEEEEEECSSCGGGSHHHHTTSEEEH-------HHHHHHHH
T ss_pred CCCCCeEEEECcCcCCHHHHHHHHhhcccceEEcccccchhccccccccchhhchhhhCCcEEec-------cccccccc
Confidence 445667889999999999999999998852110 00000000 00000111112333332222 11111122
Q ss_pred HHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC--
Q psy7829 125 ENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY-- 202 (511)
Q Consensus 125 ~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-- 202 (511)
..|. ..++.+|||+++++|.-+.+++..+...+.+++.|+++..+...++++++. +..++.....|.....
T Consensus 79 ~~L~--~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~-----g~~~v~~~~~D~~~~~~~ 151 (283)
T PF01189_consen 79 LALD--PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRL-----GVFNVIVINADARKLDPK 151 (283)
T ss_dssp HHHT--TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT-----T-SSEEEEESHHHHHHHH
T ss_pred cccc--ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhc-----CCceEEEEeecccccccc
Confidence 3343 678999999999999999999999977899999999999999999999996 4678888888876431
Q ss_pred CCCCCccEEEecCCCC----------------------------chHHHHHhhc----ccCcEEEEEE
Q psy7829 203 LPEAPYDVIYYGGCVS----------------------------EVPSRVLNQL----KKGGRILAPI 238 (511)
Q Consensus 203 ~~~~~fD~I~~~~~~~----------------------------~~~~~~~~~L----kpgG~l~~~~ 238 (511)
.....||.|+++.++. .+++.+.+.+ ||||+++.++
T Consensus 152 ~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 152 KPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp HHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred ccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 1224699999999982 2236778899 9999999874
No 186
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.88 E-value=1.3e-08 Score=93.01 Aligned_cols=121 Identities=21% Similarity=0.236 Sum_probs=83.7
Q ss_pred CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccccccc-----cccchhhhhc
Q psy7829 373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEII-----PHILDLCYLN 444 (511)
Q Consensus 373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~l-----~~~~d~i~~~ 444 (511)
++.+|||+|||+|..+..+++.. |+.+|+++|+++++++.+.++.. ..+++++++|..+.+ +..+|.++.+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 68899999999999999999876 66899999999999988776653 467888888762222 2335555443
Q ss_pred ccCCcEEE--EEcC-CccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCC
Q psy7829 445 LHRGAKVL--EIGS-GSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANIST 494 (511)
Q Consensus 445 l~~~~~vL--D~~~-g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~ 494 (511)
....+... +... -...+...+++.++|+|.++.. ..+.+...+.+.+.|+
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~ 174 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGG 174 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcc
Confidence 32111000 0000 0234567788899999999876 6677777777777776
No 187
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.88 E-value=1.1e-08 Score=96.03 Aligned_cols=110 Identities=21% Similarity=0.372 Sum_probs=76.1
Q ss_pred HHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccccccc--cc
Q psy7829 362 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEII--PH 436 (511)
Q Consensus 362 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~l--~~ 436 (511)
.++.. +.++++.+|||+|||+|..+..+++..++.++|+++|+++++++.+.++.. ..+++++.+|..... +.
T Consensus 36 ~~l~~--l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 113 (231)
T TIGR02752 36 DTMKR--MNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDN 113 (231)
T ss_pred HHHHh--cCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCC
Confidence 44554 677889999999999999999999988777899999999999887776653 456778877754421 23
Q ss_pred cchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 437 ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 437 ~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
.+|.+..... +...-..-.+...+.+.|+|+|.++.+
T Consensus 114 ~fD~V~~~~~-----l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 150 (231)
T TIGR02752 114 SFDYVTIGFG-----LRNVPDYMQVLREMYRVVKPGGKVVCL 150 (231)
T ss_pred CccEEEEecc-----cccCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 4554443211 101111223445677888999998764
No 188
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.87 E-value=7.3e-09 Score=98.52 Aligned_cols=107 Identities=15% Similarity=0.205 Sum_probs=75.0
Q ss_pred HHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccc-cccc
Q psy7829 360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEII-PHIL 438 (511)
Q Consensus 360 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l-~~~~ 438 (511)
+..++.. +...++.+|||+|||+|.++..+++.. |+.+|+|+|+++.+++.++++ +++++.+|..+.. ...+
T Consensus 18 ~~~ll~~--l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~----~~~~~~~d~~~~~~~~~f 90 (255)
T PRK14103 18 FYDLLAR--VGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER----GVDARTGDVRDWKPKPDT 90 (255)
T ss_pred HHHHHHh--CCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc----CCcEEEcChhhCCCCCCc
Confidence 4455665 677889999999999999999999887 668999999999999988664 4777777754432 2345
Q ss_pred hhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 439 DLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 439 d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
|.++.+.. +............+++.|+|||.++..
T Consensus 91 D~v~~~~~-----l~~~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 91 DVVVSNAA-----LQWVPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred eEEEEehh-----hhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 55544321 111112344556777888888887653
No 189
>KOG2361|consensus
Probab=98.87 E-value=3.1e-09 Score=94.98 Aligned_cols=145 Identities=19% Similarity=0.161 Sum_probs=98.7
Q ss_pred EEEEEcCCccHHHHHHHHHhCCC--ceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC----CCCCCCcc
Q psy7829 136 KVLDLGSGSGYQTCVFAHMVGPT--GKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG----YLPEAPYD 209 (511)
Q Consensus 136 ~vLDiG~G~G~~~~~la~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD 209 (511)
+|||||||.|.....+.+-. ++ ..|+++|.|+.+++..+++..- ...++...+.|+... ....+++|
T Consensus 74 ~ilEvGCGvGNtvfPll~~~-~n~~l~v~acDfsp~Ai~~vk~~~~~------~e~~~~afv~Dlt~~~~~~~~~~~svD 146 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTS-PNNRLKVYACDFSPRAIELVKKSSGY------DESRVEAFVWDLTSPSLKEPPEEGSVD 146 (264)
T ss_pred hheeeccCCCcccchhhhcC-CCCCeEEEEcCCChHHHHHHHhcccc------chhhhcccceeccchhccCCCCcCccc
Confidence 79999999999999888865 55 8899999999999999988654 345677777777632 23458899
Q ss_pred EEEecCCCCch--------HHHHHhhcccCcEEEEEEccCCCcceEEEE-EE-ecCCeEEEEeecceEEEeccccccccc
Q psy7829 210 VIYYGGCVSEV--------PSRVLNQLKKGGRILAPIGPMDDFQKLTQI-DR-FHDNTLQKTDLFEVAYDAIMRKALQMD 279 (511)
Q Consensus 210 ~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 279 (511)
.|.+..++..+ .+++.++|||||.|++--........+.-- .+ ..+..+.+.+...+.|.++....+.+.
T Consensus 147 ~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~ 226 (264)
T KOG2361|consen 147 IITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFT 226 (264)
T ss_pred eEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHH
Confidence 98776655433 378999999999999965543332221111 01 111223333445557777777766666
Q ss_pred ccccccCc
Q psy7829 280 IHKFQMDP 287 (511)
Q Consensus 280 ~~~~~~~~ 287 (511)
.+||....
T Consensus 227 ~agf~~~~ 234 (264)
T KOG2361|consen 227 KAGFEEVQ 234 (264)
T ss_pred hcccchhc
Confidence 66666543
No 190
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.87 E-value=1.2e-09 Score=98.97 Aligned_cols=111 Identities=23% Similarity=0.405 Sum_probs=77.1
Q ss_pred HHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----cccccccccccccc
Q psy7829 358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANETIEI 433 (511)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d~~~~ 433 (511)
.....++.. ........+||||||++||.++++|+.++++++|+++|++++.++.+++++. .++|+++.+++.+.
T Consensus 31 ~~~g~lL~~-l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~ 109 (205)
T PF01596_consen 31 PETGQLLQM-LVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEV 109 (205)
T ss_dssp HHHHHHHHH-HHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHH
T ss_pred HHHHHHHHH-HHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhh
Confidence 444455554 3455688899999999999999999988778999999999988888877665 25688999998887
Q ss_pred ccc--------cchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEE
Q psy7829 434 IPH--------ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG 477 (511)
Q Consensus 434 l~~--------~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~ 477 (511)
++. .||.+|.+-.++... .....+.+.++|||-|+.
T Consensus 110 l~~l~~~~~~~~fD~VFiDa~K~~y~--------~y~~~~~~ll~~ggvii~ 153 (205)
T PF01596_consen 110 LPELANDGEEGQFDFVFIDADKRNYL--------EYFEKALPLLRPGGVIIA 153 (205)
T ss_dssp HHHHHHTTTTTSEEEEEEESTGGGHH--------HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHhccCCCceeEEEEcccccchh--------hHHHHHhhhccCCeEEEE
Confidence 664 355555444333221 122344577888666653
No 191
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.86 E-value=6.4e-09 Score=96.99 Aligned_cols=110 Identities=15% Similarity=0.251 Sum_probs=77.1
Q ss_pred HHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----cccccccccccccc
Q psy7829 359 SIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANETIEII 434 (511)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~~~l 434 (511)
...+++.+ .+...++.+|||+|||+|+.++++++..+++++|+++|+++++++.+++|+.. ++++++.+|+.+.+
T Consensus 55 ~~g~~L~~-l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L 133 (234)
T PLN02781 55 DEGLFLSM-LVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSAL 133 (234)
T ss_pred HHHHHHHH-HHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH
Confidence 34455544 35667899999999999999999999887789999999999888887777653 35788888887765
Q ss_pred cc--------cchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEE
Q psy7829 435 PH--------ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG 477 (511)
Q Consensus 435 ~~--------~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~ 477 (511)
+. .||.++.+..+. ....+...+.+.++|||.|+.
T Consensus 134 ~~l~~~~~~~~fD~VfiDa~k~--------~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 134 DQLLNNDPKPEFDFAFVDADKP--------NYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred HHHHhCCCCCCCCEEEECCCHH--------HHHHHHHHHHHhcCCCeEEEE
Confidence 42 244443332211 111234556778899887764
No 192
>PRK03612 spermidine synthase; Provisional
Probab=98.86 E-value=1.6e-08 Score=105.52 Aligned_cols=106 Identities=22% Similarity=0.196 Sum_probs=79.9
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH--HhccCCCcCCCCCeEEEEccCCCCCC-CCCCc
Q psy7829 132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN--ISKGNKDLLDSGRVRIVEADAREGYL-PEAPY 208 (511)
Q Consensus 132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~--~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~f 208 (511)
+++.+|||+|||+|..+..+++. ++..+|+++|+++++++.++++ +...+.+.+..++++++.+|+.+... ..++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 45789999999999999998875 2337899999999999999984 32211111234689999999875322 23689
Q ss_pred cEEEecCCCCc-----------hHHHHHhhcccCcEEEEEE
Q psy7829 209 DVIYYGGCVSE-----------VPSRVLNQLKKGGRILAPI 238 (511)
Q Consensus 209 D~I~~~~~~~~-----------~~~~~~~~LkpgG~l~~~~ 238 (511)
|+|+++.+.+. +.+.+++.|||||.+++..
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 99999865432 3468899999999999854
No 193
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.86 E-value=6.2e-09 Score=94.14 Aligned_cols=111 Identities=22% Similarity=0.360 Sum_probs=78.8
Q ss_pred HHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc----cccccc-ccccc
Q psy7829 358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN----HIDLIA-NETIE 432 (511)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~----~v~~i~-~d~~~ 432 (511)
+++..++.+ .+....+.+|||||++.||.++++|..+..+++++++|+++++++.|++|+... .++++. +|+.+
T Consensus 45 ~e~g~~L~~-L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~ 123 (219)
T COG4122 45 PETGALLRL-LARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALD 123 (219)
T ss_pred hhHHHHHHH-HHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHH
Confidence 344455554 366778999999999999999999999955899999999999999998887732 266666 47666
Q ss_pred ccc----ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEE
Q psy7829 433 IIP----HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG 477 (511)
Q Consensus 433 ~l~----~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~ 477 (511)
.+. ..||.+|.+-.++.+ -.+.....+.++|||-|+.
T Consensus 124 ~l~~~~~~~fDliFIDadK~~y--------p~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 124 VLSRLLDGSFDLVFIDADKADY--------PEYLERALPLLRPGGLIVA 164 (219)
T ss_pred HHHhccCCCccEEEEeCChhhC--------HHHHHHHHHHhCCCcEEEE
Confidence 554 445655554433322 2234556677899777664
No 194
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.85 E-value=1.8e-08 Score=95.31 Aligned_cols=123 Identities=22% Similarity=0.210 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccc----ccccccc
Q psy7829 356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHID----LIANETI 431 (511)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~----~i~~d~~ 431 (511)
....+..++......+.++.+|||+|||+|.+++.+++.. + .+|+++|+++.+++.+++|...+++. +..++.
T Consensus 102 ~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g-~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~- 178 (250)
T PRK00517 102 THPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLG-A-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL- 178 (250)
T ss_pred CCHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcC-C-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-
Confidence 3444444454422335689999999999999999877653 3 47999999999999988887765542 111111
Q ss_pred ccccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCC
Q psy7829 432 EIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANIST 494 (511)
Q Consensus 432 ~~l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~ 494 (511)
.+|.++.++.... .-.+...+.+.++|+|.++.. ....+...+.+.+.|+
T Consensus 179 -----~fD~Vvani~~~~--------~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf 231 (250)
T PRK00517 179 -----KADVIVANILANP--------LLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGF 231 (250)
T ss_pred -----CcCEEEEcCcHHH--------HHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCC
Confidence 3455444321110 112345677889999998865 4445556666777776
No 195
>KOG3191|consensus
Probab=98.85 E-value=3.5e-08 Score=84.23 Aligned_cols=102 Identities=21% Similarity=0.309 Sum_probs=83.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEE
Q psy7829 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIY 212 (511)
Q Consensus 133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~ 212 (511)
...-++|||||||..+..+++..+++....++|+++.+++...+.+..++ .+++.++.|+...... ++.|+++
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~------~~~~~V~tdl~~~l~~-~~VDvLv 115 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR------VHIDVVRTDLLSGLRN-ESVDVLV 115 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC------CccceeehhHHhhhcc-CCccEEE
Confidence 36679999999999999999999999999999999999999999988764 3588999999877665 8899999
Q ss_pred ecCCCC---------------------------chHHHHHhhcccCcEEEEEEccC
Q psy7829 213 YGGCVS---------------------------EVPSRVLNQLKKGGRILAPIGPM 241 (511)
Q Consensus 213 ~~~~~~---------------------------~~~~~~~~~LkpgG~l~~~~~~~ 241 (511)
.++++- .++..+-..|.|.|.+++..-..
T Consensus 116 fNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~ 171 (209)
T KOG3191|consen 116 FNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA 171 (209)
T ss_pred ECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh
Confidence 998761 11234557789999999865433
No 196
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.85 E-value=1.1e-07 Score=85.59 Aligned_cols=113 Identities=15% Similarity=0.011 Sum_probs=82.1
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCC
Q psy7829 120 IADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAR 199 (511)
Q Consensus 120 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 199 (511)
...+...+.. .-.+.+|||++||+|.+++.++.+. . .+|+++|.++.+++.+++|++.++ ..++++++++|+.
T Consensus 37 rea~f~~l~~-~~~g~~vLDLfaGsG~lglea~srg-a-~~v~~vE~~~~a~~~~~~N~~~~~----~~~~~~~~~~D~~ 109 (189)
T TIGR00095 37 RELFFNILRP-EIQGAHLLDVFAGSGLLGEEALSRG-A-KVAFLEEDDRKANQTLKENLALLK----SGEQAEVVRNSAL 109 (189)
T ss_pred HHHHHHHHHH-hcCCCEEEEecCCCcHHHHHHHhCC-C-CEEEEEeCCHHHHHHHHHHHHHhC----CcccEEEEehhHH
Confidence 3334444432 2368899999999999999999885 3 479999999999999999999865 2347899999985
Q ss_pred CCC---CCC-CCccEEEecCCCCc-h----HHHHH--hhcccCcEEEEEEc
Q psy7829 200 EGY---LPE-APYDVIYYGGCVSE-V----PSRVL--NQLKKGGRILAPIG 239 (511)
Q Consensus 200 ~~~---~~~-~~fD~I~~~~~~~~-~----~~~~~--~~LkpgG~l~~~~~ 239 (511)
... ... ..||+|+.++++.. . ...+. .+|+++|.+++...
T Consensus 110 ~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 110 RALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred HHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 421 111 24899999998843 1 22222 36889998888654
No 197
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.84 E-value=1.5e-08 Score=100.96 Aligned_cols=117 Identities=15% Similarity=0.085 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhhcCC-CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829 118 NQIADAAENLKLHLV-DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA 196 (511)
Q Consensus 118 ~~~~~~~~~l~~~~~-~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~ 196 (511)
.....+++.+...+. .+.+|||++||+|.+++.+++.. .+|+++|+++.+++.|++|+..++ .+|++|+.+
T Consensus 190 ~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~-----~~~v~~~~~ 261 (362)
T PRK05031 190 AVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANG-----IDNVQIIRM 261 (362)
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhC-----CCcEEEEEC
Confidence 344444444433232 23579999999999999999875 269999999999999999998864 458999999
Q ss_pred cCCCCCC---C-------------CCCccEEEecCCCCchHHHH-HhhcccCcEEEEEEccCC
Q psy7829 197 DAREGYL---P-------------EAPYDVIYYGGCVSEVPSRV-LNQLKKGGRILAPIGPMD 242 (511)
Q Consensus 197 d~~~~~~---~-------------~~~fD~I~~~~~~~~~~~~~-~~~LkpgG~l~~~~~~~~ 242 (511)
|+.+... . ...||+|+.++|...+...+ ....+|++.+++++.+..
T Consensus 262 d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~~~~ivyvSC~p~t 324 (362)
T PRK05031 262 SAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQAYERILYISCNPET 324 (362)
T ss_pred CHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHccCCEEEEEeCHHH
Confidence 9864211 0 12589999999976655444 444468999999988744
No 198
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.84 E-value=2.1e-08 Score=95.34 Aligned_cols=120 Identities=23% Similarity=0.332 Sum_probs=72.3
Q ss_pred HHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----cccccccccccc---
Q psy7829 360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANETIE--- 432 (511)
Q Consensus 360 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~~--- 432 (511)
...+++. +.+++|++|||||||.|.+++.+|+..| .+|+||.+++++.+.+++++.. +.+++...|..+
T Consensus 51 ~~~~~~~--~~l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~ 126 (273)
T PF02353_consen 51 LDLLCEK--LGLKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG 126 (273)
T ss_dssp HHHHHTT--TT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---
T ss_pred HHHHHHH--hCCCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC
Confidence 3344554 7899999999999999999999999986 8999999999888877655542 234554443211
Q ss_pred ------------c-----ccccchhhhhcccCCcEEE--EEcCCccHH-H------HHHHHHhCCCcEEEEhHHHHH
Q psy7829 433 ------------I-----IPHILDLCYLNLHRGAKVL--EIGSGSGYL-A------TLMAHLVGPTGHVTGLEHMMD 483 (511)
Q Consensus 433 ------------~-----l~~~~d~i~~~l~~~~~vL--D~~~g~g~~-~------~~l~~~l~~~g~v~~~~~ml~ 483 (511)
. .+..+..+...++|+++++ .+++..... . ..+.+.+-|+|.+.....++.
T Consensus 127 ~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~ 203 (273)
T PF02353_consen 127 KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILR 203 (273)
T ss_dssp S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHH
T ss_pred CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHH
Confidence 1 1234666667778888765 333322221 1 346677788888877766665
No 199
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.84 E-value=1.5e-08 Score=96.49 Aligned_cols=92 Identities=20% Similarity=0.282 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829 117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA 196 (511)
Q Consensus 117 p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~ 196 (511)
|-+...+++.+. +.++..++|.+||.|+.+..+++.+++.++|+|+|.++.+++.|++++.. .++++++++
T Consensus 5 pVll~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-------~~ri~~i~~ 75 (296)
T PRK00050 5 PVLLDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-------FGRFTLVHG 75 (296)
T ss_pred cccHHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-------CCcEEEEeC
Confidence 457778888886 67889999999999999999999986689999999999999999988754 247999999
Q ss_pred cCCCCC---CC-CCCccEEEecCCC
Q psy7829 197 DAREGY---LP-EAPYDVIYYGGCV 217 (511)
Q Consensus 197 d~~~~~---~~-~~~fD~I~~~~~~ 217 (511)
|+.+.. .. ..++|.|+++..+
T Consensus 76 ~f~~l~~~l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 76 NFSNLKEVLAEGLGKVDGILLDLGV 100 (296)
T ss_pred CHHHHHHHHHcCCCccCEEEECCCc
Confidence 987421 11 1279999887544
No 200
>KOG3420|consensus
Probab=98.84 E-value=7.8e-09 Score=84.49 Aligned_cols=99 Identities=20% Similarity=0.252 Sum_probs=80.4
Q ss_pred CcccchhHHHHHHHHHHhhcCC--CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCC
Q psy7829 111 AGVMNAPNQIADAAENLKLHLV--DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188 (511)
Q Consensus 111 ~~~~~~p~~~~~~~~~l~~~~~--~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~ 188 (511)
.+..++|++.+.|+..+.+-.. .|.+++|+|||+|-++...+-. ....|.|+|+++++++.+++|++...
T Consensus 24 EQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~--~~e~vlGfDIdpeALEIf~rNaeEfE------ 95 (185)
T KOG3420|consen 24 EQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMP--KNESVLGFDIDPEALEIFTRNAEEFE------ 95 (185)
T ss_pred hhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcC--CCceEEeeecCHHHHHHHhhchHHhh------
Confidence 4566788899999888865332 6889999999999999655543 35679999999999999999998853
Q ss_pred CCeEEEEccCCCCCCCCCCccEEEecCCC
Q psy7829 189 GRVRIVEADAREGYLPEAPYDVIYYGGCV 217 (511)
Q Consensus 189 ~~v~~~~~d~~~~~~~~~~fD~I~~~~~~ 217 (511)
-+++++++|..+.-+..+.||.++.++++
T Consensus 96 vqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 96 VQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred hhhheeeeeccchhccCCeEeeEEecCCC
Confidence 35789999988765556889999999988
No 201
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.84 E-value=1.5e-08 Score=96.65 Aligned_cols=110 Identities=19% Similarity=0.313 Sum_probs=78.1
Q ss_pred HHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccc-ccc
Q psy7829 359 SIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEII-PHI 437 (511)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l-~~~ 437 (511)
....++.. +.+.++.+|||||||+|.++..+++.. +.++|+++|+++.+++.++++. ++++++.+|..... +..
T Consensus 19 ~~~~ll~~--~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~--~~~~~~~~d~~~~~~~~~ 93 (258)
T PRK01683 19 PARDLLAR--VPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL--PDCQFVEADIASWQPPQA 93 (258)
T ss_pred HHHHHHhh--CCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC--CCCeEEECchhccCCCCC
Confidence 45555665 677889999999999999999999887 6689999999999999988875 45777766654332 234
Q ss_pred chhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 438 LDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 438 ~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
+|.++.+.. +........+...+.+.|+|+|.++..
T Consensus 94 fD~v~~~~~-----l~~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 94 LDLIFANAS-----LQWLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred ccEEEEccC-----hhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 555544321 111123445667778888999987663
No 202
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.84 E-value=2.2e-08 Score=102.46 Aligned_cols=121 Identities=17% Similarity=0.198 Sum_probs=82.4
Q ss_pred cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhh---ccccccccccccccccccccchhhhhcc
Q psy7829 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIAN---ISTNHIDLIANETIEIIPHILDLCYLNL 445 (511)
Q Consensus 369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~---~~~~~v~~i~~d~~~~l~~~~d~i~~~l 445 (511)
+.+.+|++|||+|||+|..|+.+++.++++++|+++|++.++++.+++| .+..+++++++|......... ...-
T Consensus 248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~---~~~~ 324 (434)
T PRK14901 248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKP---QWRG 324 (434)
T ss_pred hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccc---cccc
Confidence 6778999999999999999999999887678999999998877766555 456678888887654321100 0011
Q ss_pred cCCcEEEEEcC-CccHH-------------------------HHHHHHHhCCCcEEEEh------HHHHHHHHHHHHhc
Q psy7829 446 HRGAKVLEIGS-GSGYL-------------------------ATLMAHLVGPTGHVTGL------EHMMDIAIESIANI 492 (511)
Q Consensus 446 ~~~~~vLD~~~-g~g~~-------------------------~~~l~~~l~~~g~v~~~------~~ml~~a~~~~~~~ 492 (511)
..+..++|..| |+|.+ ....++.++|||+++-. ++-.+....-+++.
T Consensus 325 ~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~ 403 (434)
T PRK14901 325 YFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARH 403 (434)
T ss_pred cCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhC
Confidence 23456678877 66653 34556788999997622 44444444444443
No 203
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.83 E-value=4.1e-08 Score=93.12 Aligned_cols=106 Identities=24% Similarity=0.268 Sum_probs=82.6
Q ss_pred cchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEE
Q psy7829 114 MNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI 193 (511)
Q Consensus 114 ~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~ 193 (511)
+..+.+...+++.+. ..++.+|||+|||+|.++..+++.. + +|+++|+++.+++.+++++.. .+++++
T Consensus 12 l~d~~i~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~-~--~v~~iE~d~~~~~~l~~~~~~-------~~~v~v 79 (253)
T TIGR00755 12 LIDESVIQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRA-K--KVTAIEIDPRLAEILRKLLSL-------YERLEV 79 (253)
T ss_pred CCCHHHHHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhC-C--cEEEEECCHHHHHHHHHHhCc-------CCcEEE
Confidence 456677888888775 6788999999999999999999986 3 499999999999999987643 347999
Q ss_pred EEccCCCCCCCCCCcc---EEEecCCCCchHHHHHhhc-ccCcE
Q psy7829 194 VEADAREGYLPEAPYD---VIYYGGCVSEVPSRVLNQL-KKGGR 233 (511)
Q Consensus 194 ~~~d~~~~~~~~~~fD---~I~~~~~~~~~~~~~~~~L-kpgG~ 233 (511)
+++|+...... .|| +|+++.+++.-..-+.++| .+++.
T Consensus 80 ~~~D~~~~~~~--~~d~~~~vvsNlPy~i~~~il~~ll~~~~~~ 121 (253)
T TIGR00755 80 IEGDALKVDLP--DFPKQLKVVSNLPYNISSPLIFKLLEKPKFR 121 (253)
T ss_pred EECchhcCChh--HcCCcceEEEcCChhhHHHHHHHHhccCCCc
Confidence 99999764432 466 8899888765555566666 45544
No 204
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.83 E-value=5.5e-09 Score=92.68 Aligned_cols=101 Identities=24% Similarity=0.379 Sum_probs=73.2
Q ss_pred CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccc---ccccccccccccc-ccchhhhhcccC
Q psy7829 372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH---IDLIANETIEIIP-HILDLCYLNLHR 447 (511)
Q Consensus 372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~---v~~i~~d~~~~l~-~~~d~i~~~l~~ 447 (511)
.++.+|||+|||+|.+++.+++.. |+.+|+++|+++..++.+.+|+..++ ++++..|..+.++ ..+|.++.|++-
T Consensus 30 ~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~ 108 (170)
T PF05175_consen 30 HKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPF 108 (170)
T ss_dssp HTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---S
T ss_pred ccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccch
Confidence 378899999999999999999876 66789999999988888877776544 6688888776665 778988888651
Q ss_pred CcEEEEEcCCcc-----HHHHHHHHHhCCCcEEEEh
Q psy7829 448 GAKVLEIGSGSG-----YLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 448 ~~~vLD~~~g~g-----~~~~~l~~~l~~~g~v~~~ 478 (511)
. -+...| .+.....+.|+|+|.++.+
T Consensus 109 ~-----~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 109 H-----AGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp B-----TTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred h-----cccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 1 111111 1233456788999998666
No 205
>KOG2899|consensus
Probab=98.83 E-value=1e-08 Score=91.52 Aligned_cols=107 Identities=20% Similarity=0.301 Sum_probs=73.5
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCc--C---------------------
Q psy7829 130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDL--L--------------------- 186 (511)
Q Consensus 130 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~--~--------------------- 186 (511)
....+..+|||||-+|.+++.+|+.+++ ..+.|+||++..++.|+++++..-... .
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence 3456788999999999999999999975 569999999999999999876421000 0
Q ss_pred -------CCCCeEEEEccCC---C--CCCCCCCccEEEecCCCCc------------hHHHHHhhcccCcEEEEE
Q psy7829 187 -------DSGRVRIVEADAR---E--GYLPEAPYDVIYYGGCVSE------------VPSRVLNQLKKGGRILAP 237 (511)
Q Consensus 187 -------~~~~v~~~~~d~~---~--~~~~~~~fD~I~~~~~~~~------------~~~~~~~~LkpgG~l~~~ 237 (511)
..+|+.|...+.. + .+.....||+|+|-..-.| +...+.++|.|||+|++.
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 0012222222211 0 0122367999988654433 348899999999999984
No 206
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.83 E-value=3.9e-08 Score=93.39 Aligned_cols=103 Identities=24% Similarity=0.254 Sum_probs=80.7
Q ss_pred cchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEE
Q psy7829 114 MNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI 193 (511)
Q Consensus 114 ~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~ 193 (511)
+..+.+...+++.+. +.++.+|||+|||+|.++..+++.. .+|+++|+++.+++.+++++.. .+++++
T Consensus 12 l~d~~~~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~-------~~~v~i 79 (258)
T PRK14896 12 LIDDRVVDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIA-------AGNVEI 79 (258)
T ss_pred cCCHHHHHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhcc-------CCCEEE
Confidence 356777888888775 6788999999999999999999973 3699999999999999988754 347999
Q ss_pred EEccCCCCCCCCCCccEEEecCCCCchHHHHHhhccc
Q psy7829 194 VEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKK 230 (511)
Q Consensus 194 ~~~d~~~~~~~~~~fD~I~~~~~~~~~~~~~~~~Lkp 230 (511)
+++|+.+... ..||.|+++.++..-...+.+.++.
T Consensus 80 i~~D~~~~~~--~~~d~Vv~NlPy~i~s~~~~~l~~~ 114 (258)
T PRK14896 80 IEGDALKVDL--PEFNKVVSNLPYQISSPITFKLLKH 114 (258)
T ss_pred EEeccccCCc--hhceEEEEcCCcccCcHHHHHHHhh
Confidence 9999976432 3589999998886433334444443
No 207
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.83 E-value=5.9e-08 Score=92.75 Aligned_cols=115 Identities=21% Similarity=0.181 Sum_probs=92.1
Q ss_pred chhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEE
Q psy7829 115 NAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIV 194 (511)
Q Consensus 115 ~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~ 194 (511)
..|.+...++++.. .++|..|||--||||.+.+..... .++++|+|++..|++-|+.|++..+ .....+.
T Consensus 181 ~~P~lAR~mVNLa~--v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~-----i~~~~~~ 250 (347)
T COG1041 181 MDPRLARAMVNLAR--VKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYG-----IEDYPVL 250 (347)
T ss_pred cCHHHHHHHHHHhc--cccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhC-----cCceeEE
Confidence 35666666666665 889999999999999999987665 3579999999999999999999863 4456556
Q ss_pred Ec-cCCCCCCCCCCccEEEecCCCC---------------chHHHHHhhcccCcEEEEEEc
Q psy7829 195 EA-DAREGYLPEAPYDVIYYGGCVS---------------EVPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 195 ~~-d~~~~~~~~~~fD~I~~~~~~~---------------~~~~~~~~~LkpgG~l~~~~~ 239 (511)
.. |+...+....++|.|.+++++- ..++.+.+.||+||+++++..
T Consensus 251 ~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 251 KVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred EecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 55 9887665556799999998871 234778999999999999766
No 208
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.83 E-value=1.2e-08 Score=97.18 Aligned_cols=102 Identities=19% Similarity=0.177 Sum_probs=73.9
Q ss_pred hcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---cccccccccccccccccccchhhhhc
Q psy7829 368 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANETIEIIPHILDLCYLN 444 (511)
Q Consensus 368 ~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~~~~l~~~~d~i~~~ 444 (511)
.+.+++|++|||+|||+|..|+.+|..+++.++|+++|+++.+++.+++|+ +..+++++..|...... . .
T Consensus 66 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~-~------~ 138 (264)
T TIGR00446 66 ALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGA-A------V 138 (264)
T ss_pred HhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhh-h------c
Confidence 367789999999999999999999998866789999999988887666655 45567777777543211 0 0
Q ss_pred ccCCcEEEEEcC-CccH-------------------------HHHHHHHHhCCCcEEE
Q psy7829 445 LHRGAKVLEIGS-GSGY-------------------------LATLMAHLVGPTGHVT 476 (511)
Q Consensus 445 l~~~~~vLD~~~-g~g~-------------------------~~~~l~~~l~~~g~v~ 476 (511)
-..+..++|..| |+|. +....++.++|+|.++
T Consensus 139 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lv 196 (264)
T TIGR00446 139 PKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLV 196 (264)
T ss_pred cCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 124456677777 5553 3344567789999875
No 209
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.83 E-value=2.4e-08 Score=96.48 Aligned_cols=126 Identities=17% Similarity=0.118 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccc----ccccccc
Q psy7829 356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHID----LIANETI 431 (511)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~----~i~~d~~ 431 (511)
+...+..++........++.+|||+|||+|.+++.+++.. . .+|+++|+++.+++.+++|...+++. +..++..
T Consensus 142 ~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g-~-~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~ 219 (288)
T TIGR00406 142 THPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLG-A-AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE 219 (288)
T ss_pred CCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcC-C-CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc
Confidence 3344444444322234578999999999999999888653 3 69999999999999888887755433 2333222
Q ss_pred ccccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHh
Q psy7829 432 EIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIAN 491 (511)
Q Consensus 432 ~~l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~ 491 (511)
...+..+|.++.++... ..-.+...+.+.++|+|.++.. ..-.+...+.+++
T Consensus 220 ~~~~~~fDlVvan~~~~--------~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~ 274 (288)
T TIGR00406 220 QPIEGKADVIVANILAE--------VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQ 274 (288)
T ss_pred cccCCCceEEEEecCHH--------HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHc
Confidence 22233455544432110 0113445667889999998764 3333334444443
No 210
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.83 E-value=1.9e-08 Score=99.63 Aligned_cols=102 Identities=17% Similarity=0.139 Sum_probs=79.7
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCC---------
Q psy7829 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLP--------- 204 (511)
Q Consensus 134 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--------- 204 (511)
+.+|||+|||+|.+++.+++... +|+++|+++.+++.|++|+..++ .+|++|+.+|+.+....
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~~~ 269 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANN-----IDNVQIIRMSAEEFTQAMNGVREFRR 269 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEEcCHHHHHHHHhhcccccc
Confidence 34799999999999999998752 69999999999999999998864 45899999998642210
Q ss_pred -------CCCccEEEecCCCCchHHHH-HhhcccCcEEEEEEccCCC
Q psy7829 205 -------EAPYDVIYYGGCVSEVPSRV-LNQLKKGGRILAPIGPMDD 243 (511)
Q Consensus 205 -------~~~fD~I~~~~~~~~~~~~~-~~~LkpgG~l~~~~~~~~~ 243 (511)
...||+|+.+++-..+...+ ....+|++.+++++.+..-
T Consensus 270 ~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~~~~ivYvsC~p~tl 316 (353)
T TIGR02143 270 LKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQAYERILYISCNPETL 316 (353)
T ss_pred ccccccccCCCCEEEECCCCCCCcHHHHHHHHcCCcEEEEEcCHHHH
Confidence 12389999999965554443 4455789999999887543
No 211
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.82 E-value=2.6e-08 Score=96.19 Aligned_cols=83 Identities=17% Similarity=0.249 Sum_probs=64.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhcc-CCCcCCCCCeEEEE-ccCC---CCC-CCCC
Q psy7829 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKG-NKDLLDSGRVRIVE-ADAR---EGY-LPEA 206 (511)
Q Consensus 133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~~~~~v~~~~-~d~~---~~~-~~~~ 206 (511)
.+.++||||||+|.+...++... +..+++|+|+++.+++.|++|++.+ + ...+|+++. .|.. ... ...+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~----l~~~I~~~~~~~~~~i~~~i~~~~~ 188 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPG----LNGAIRLRLQKDSKAIFKGIIHKNE 188 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccC----CcCcEEEEEccchhhhhhcccccCC
Confidence 45789999999999888888775 5789999999999999999999987 4 345788764 3322 221 1346
Q ss_pred CccEEEecCCCCch
Q psy7829 207 PYDVIYYGGCVSEV 220 (511)
Q Consensus 207 ~fD~I~~~~~~~~~ 220 (511)
.||+|+||++++.-
T Consensus 189 ~fDlivcNPPf~~s 202 (321)
T PRK11727 189 RFDATLCNPPFHAS 202 (321)
T ss_pred ceEEEEeCCCCcCc
Confidence 89999999998643
No 212
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.82 E-value=3e-08 Score=94.93 Aligned_cols=102 Identities=20% Similarity=0.159 Sum_probs=78.1
Q ss_pred chhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEE
Q psy7829 115 NAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIV 194 (511)
Q Consensus 115 ~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~ 194 (511)
..+.+...+++.+. +.++.+|||+|||+|.++..+++.. + +|+++|+++.+++.+++++.. ++++++
T Consensus 26 ~~~~i~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~-~--~v~avE~d~~~~~~~~~~~~~--------~~v~~i 92 (272)
T PRK00274 26 IDENILDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERA-A--KVTAVEIDRDLAPILAETFAE--------DNLTII 92 (272)
T ss_pred CCHHHHHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhC-C--cEEEEECCHHHHHHHHHhhcc--------CceEEE
Confidence 44557777777775 6788999999999999999999985 3 799999999999999887632 479999
Q ss_pred EccCCCCCCCCCCccEEEecCCCCchHHHHHhhcc
Q psy7829 195 EADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLK 229 (511)
Q Consensus 195 ~~d~~~~~~~~~~fD~I~~~~~~~~~~~~~~~~Lk 229 (511)
++|+.+...+.-.+|.|++|.++.--..-+.++|.
T Consensus 93 ~~D~~~~~~~~~~~~~vv~NlPY~iss~ii~~~l~ 127 (272)
T PRK00274 93 EGDALKVDLSELQPLKVVANLPYNITTPLLFHLLE 127 (272)
T ss_pred EChhhcCCHHHcCcceEEEeCCccchHHHHHHHHh
Confidence 99988643321115899999887544444555554
No 213
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.82 E-value=2.1e-08 Score=98.88 Aligned_cols=102 Identities=22% Similarity=0.209 Sum_probs=84.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC----CCCCc
Q psy7829 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL----PEAPY 208 (511)
Q Consensus 133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~f 208 (511)
.|.+|||+.|=||.++.+.|... ..+|++||.|..+++.|++|++.|| +...++.|+++|+.+.+. ...+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gG--A~~vt~VD~S~~al~~a~~N~~LNg---~~~~~~~~i~~Dvf~~l~~~~~~g~~f 291 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGG--ASEVTSVDLSKRALEWARENAELNG---LDGDRHRFIVGDVFKWLRKAERRGEKF 291 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcC--CCceEEEeccHHHHHHHHHHHHhcC---CCccceeeehhhHHHHHHHHHhcCCcc
Confidence 39999999999999999988864 3579999999999999999999987 356679999999975332 23589
Q ss_pred cEEEecCCC---------------CchHHHHHhhcccCcEEEEEEc
Q psy7829 209 DVIYYGGCV---------------SEVPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 209 D~I~~~~~~---------------~~~~~~~~~~LkpgG~l~~~~~ 239 (511)
|+|++++|- ..+...+.+.|+|||.+++...
T Consensus 292 DlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 292 DLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred cEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 999999875 1234678999999999998654
No 214
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.82 E-value=2e-09 Score=95.04 Aligned_cols=114 Identities=18% Similarity=0.249 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEE
Q psy7829 116 APNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE 195 (511)
Q Consensus 116 ~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~ 195 (511)
-|.+.+.++..+. ..+-.++||+|||||..+..+..... +++|+|+|+.|++.|.++- .++ +..+
T Consensus 110 vP~~l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eKg--------~YD--~L~~ 174 (287)
T COG4976 110 VPELLAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEKG--------LYD--TLYV 174 (287)
T ss_pred cHHHHHHHHHhcc--CCccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhcc--------chH--HHHH
Confidence 4566666666665 44578999999999999998887763 4999999999999998751 111 2233
Q ss_pred ccCCCCC--CCCCCccEEEecCCCC------chHHHHHhhcccCcEEEEEEccCCCc
Q psy7829 196 ADAREGY--LPEAPYDVIYYGGCVS------EVPSRVLNQLKKGGRILAPIGPMDDF 244 (511)
Q Consensus 196 ~d~~~~~--~~~~~fD~I~~~~~~~------~~~~~~~~~LkpgG~l~~~~~~~~~~ 244 (511)
+|+.... .....||+|.+..++. .+..-....|+|||.+.+++..-...
T Consensus 175 Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~ 231 (287)
T COG4976 175 AEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDD 231 (287)
T ss_pred HHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCC
Confidence 3332111 2347799998876654 34567889999999999988755443
No 215
>KOG2940|consensus
Probab=98.82 E-value=9.8e-10 Score=96.77 Aligned_cols=175 Identities=14% Similarity=0.063 Sum_probs=122.8
Q ss_pred HHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC
Q psy7829 121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE 200 (511)
Q Consensus 121 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 200 (511)
.++.+.+....+....++|||||-|++..++.... -.+++-+|.|-.|++.++..-. . .-.+....+|-+.
T Consensus 60 ~rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qd-p------~i~~~~~v~DEE~ 130 (325)
T KOG2940|consen 60 DRLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQD-P------SIETSYFVGDEEF 130 (325)
T ss_pred HHHHHHHHHHhhhCcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCC-C------ceEEEEEecchhc
Confidence 34445544334567789999999999999987764 4679999999999999876411 1 1124566777665
Q ss_pred CCCCCCCccEEEecCCCCchH------HHHHhhcccCcEEEEEEccCCCcceEEEEEEecCCeEEEEeecce---EEEec
Q psy7829 201 GYLPEAPYDVIYYGGCVSEVP------SRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEV---AYDAI 271 (511)
Q Consensus 201 ~~~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l 271 (511)
....++++|+|+++..+||+. .+++..|||+|.++.++...+...+++.-....+ ..++....- -|...
T Consensus 131 Ldf~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAe--lER~GGiSphiSPf~qv 208 (325)
T KOG2940|consen 131 LDFKENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAE--LEREGGISPHISPFTQV 208 (325)
T ss_pred ccccccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHH--HHhccCCCCCcChhhhh
Confidence 555679999999999988764 6889999999999987665544333221111111 111222222 34455
Q ss_pred ccccccccccccccCccccccccccccchhhHHHH
Q psy7829 272 MRKALQMDIHKFQMDPVDENLFTLMDKDSDELFSE 306 (511)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 306 (511)
.+.+..+.++||.+..++.+....-++.+.+++.+
T Consensus 209 rDiG~LL~rAGF~m~tvDtDEi~v~Yp~mfeLm~d 243 (325)
T KOG2940|consen 209 RDIGNLLTRAGFSMLTVDTDEIVVGYPRMFELMED 243 (325)
T ss_pred hhhhhHHhhcCcccceecccceeecCchHHHHHHH
Confidence 57888999999999999999999889888887765
No 216
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.82 E-value=3.2e-08 Score=90.77 Aligned_cols=101 Identities=23% Similarity=0.247 Sum_probs=85.9
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC---CCCCCCCccEE
Q psy7829 135 AKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE---GYLPEAPYDVI 211 (511)
Q Consensus 135 ~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~~~~fD~I 211 (511)
..+||||||.|.+...+|+.. |+..++|||+....+..|.+.+.+.+ .+|+.+++.|+.. .+.++++.|.|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~-----l~Nlri~~~DA~~~l~~~~~~~sl~~I 123 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELG-----LKNLRLLCGDAVEVLDYLIPDGSLDKI 123 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcC-----CCcEEEEcCCHHHHHHhcCCCCCeeEE
Confidence 589999999999999999996 88999999999999999999999864 4599999999874 33455699999
Q ss_pred EecCCCCch--------------HHHHHhhcccCcEEEEEEccC
Q psy7829 212 YYGGCVSEV--------------PSRVLNQLKKGGRILAPIGPM 241 (511)
Q Consensus 212 ~~~~~~~~~--------------~~~~~~~LkpgG~l~~~~~~~ 241 (511)
+++.+-+|. ++.+.+.|+|||.|.+..+..
T Consensus 124 ~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~ 167 (227)
T COG0220 124 YINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNE 167 (227)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCH
Confidence 999877443 478899999999999976643
No 217
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.81 E-value=7.3e-08 Score=81.12 Aligned_cols=115 Identities=18% Similarity=0.167 Sum_probs=91.5
Q ss_pred chhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEE
Q psy7829 115 NAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIV 194 (511)
Q Consensus 115 ~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~ 194 (511)
+++.+.++|...+. ...|.-|||+|.|+|.++..+.++.-+...++++|.|++.+....+... .++++
T Consensus 32 sSs~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p----------~~~ii 99 (194)
T COG3963 32 SSSILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP----------GVNII 99 (194)
T ss_pred CcHHHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC----------Ccccc
Confidence 45567777888776 7789999999999999999999887777889999999999988877643 46789
Q ss_pred EccCCCCC-----CCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEEEccC
Q psy7829 195 EADAREGY-----LPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAPIGPM 241 (511)
Q Consensus 195 ~~d~~~~~-----~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~~~~~ 241 (511)
.+|+...- .....||.|+|..++-.+ ++.+...|.+||.++.-...+
T Consensus 100 ~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 100 NGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred ccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 99986421 234679999999887544 377888999999998755543
No 218
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.81 E-value=2e-08 Score=92.21 Aligned_cols=116 Identities=28% Similarity=0.373 Sum_probs=81.3
Q ss_pred chhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhc-cCC---C---cCC
Q psy7829 115 NAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISK-GNK---D---LLD 187 (511)
Q Consensus 115 ~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~~~---~---~~~ 187 (511)
.+|.+...+-. +. ..++.+||..|||.|+-...||.+. .+|+|+|+|+.+++.+.+.... ... . ...
T Consensus 22 ~~p~L~~~~~~-l~--~~~~~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~ 95 (218)
T PF05724_consen 22 PNPALVEYLDS-LA--LKPGGRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQ 95 (218)
T ss_dssp STHHHHHHHHH-HT--TSTSEEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEET
T ss_pred CCHHHHHHHHh-cC--CCCCCeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHHhccCCCcccccceeeec
Confidence 45555554433 43 6678899999999999999999874 3699999999999998443221 000 0 012
Q ss_pred CCCeEEEEccCCCCCCC-CCCccEEEecCCCCchH--------HHHHhhcccCcEEEE
Q psy7829 188 SGRVRIVEADAREGYLP-EAPYDVIYYGGCVSEVP--------SRVLNQLKKGGRILA 236 (511)
Q Consensus 188 ~~~v~~~~~d~~~~~~~-~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~l~~ 236 (511)
..+|++.++|+...... .++||+|+-...+..++ +.+.++|+|||.+++
T Consensus 96 ~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 96 AGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp TSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred CCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 45789999999874332 25799999887776554 678999999999443
No 219
>KOG1663|consensus
Probab=98.81 E-value=4.6e-08 Score=87.31 Aligned_cols=116 Identities=20% Similarity=0.316 Sum_probs=92.7
Q ss_pred hhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEE
Q psy7829 116 APNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE 195 (511)
Q Consensus 116 ~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~ 195 (511)
.|.....+..++. +..+.++||||.=+|+.+..+|..+.++++|+++|++++..+.+.+..+.+| ....|++++
T Consensus 58 ~~d~g~fl~~li~--~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag----v~~KI~~i~ 131 (237)
T KOG1663|consen 58 GPDKGQFLQMLIR--LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG----VDHKITFIE 131 (237)
T ss_pred ChHHHHHHHHHHH--HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc----ccceeeeee
Confidence 3434343333443 5578899999999999999999999889999999999999999998888876 467899999
Q ss_pred ccCCCCC------CCCCCccEEEecCCCC---chHHHHHhhcccCcEEEEE
Q psy7829 196 ADAREGY------LPEAPYDVIYYGGCVS---EVPSRVLNQLKKGGRILAP 237 (511)
Q Consensus 196 ~d~~~~~------~~~~~fD~I~~~~~~~---~~~~~~~~~LkpgG~l~~~ 237 (511)
+++.+.. ...++||.+|.+.--. ....++.++||+||.|++-
T Consensus 132 g~a~esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 132 GPALESLDELLADGESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred cchhhhHHHHHhcCCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEe
Confidence 9986422 1348899999986543 3447899999999999984
No 220
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.80 E-value=3.3e-08 Score=88.89 Aligned_cols=100 Identities=28% Similarity=0.312 Sum_probs=75.5
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCcc
Q psy7829 130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYD 209 (511)
Q Consensus 130 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 209 (511)
...++..|+|+.||-|.+++.+|+.. ...+|+++|++|.+++..++|++.++ ...++..+++|..+... .+.||
T Consensus 98 ~v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNk----v~~~i~~~~~D~~~~~~-~~~~d 171 (200)
T PF02475_consen 98 LVKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNK----VENRIEVINGDAREFLP-EGKFD 171 (200)
T ss_dssp C--TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-----TTTEEEEES-GGG----TT-EE
T ss_pred cCCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcC----CCCeEEEEcCCHHHhcC-ccccC
Confidence 36789999999999999999999864 56789999999999999999999986 35679999999987554 58899
Q ss_pred EEEecCCCC--chHHHHHhhcccCcEEE
Q psy7829 210 VIYYGGCVS--EVPSRVLNQLKKGGRIL 235 (511)
Q Consensus 210 ~I~~~~~~~--~~~~~~~~~LkpgG~l~ 235 (511)
.|+++.+-. .++..+.+.+++||.+.
T Consensus 172 rvim~lp~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 172 RVIMNLPESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEEE--TSSGGGGHHHHHHHEEEEEEEE
T ss_pred EEEECChHHHHHHHHHHHHHhcCCcEEE
Confidence 999998753 46688999999999874
No 221
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.79 E-value=2.5e-08 Score=90.51 Aligned_cols=116 Identities=17% Similarity=0.284 Sum_probs=80.3
Q ss_pred CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---cccccccccccccccc----c-ccchhhhh
Q psy7829 372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANETIEII----P-HILDLCYL 443 (511)
Q Consensus 372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~~~~l----~-~~~d~i~~ 443 (511)
....+|||||||+|.++..+|+.. |+.+|+|+|++.++++.+.++. +..|++++++|..+.. + ..++.++.
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEE
Confidence 356799999999999999999887 7789999999998888766554 3568899988875532 2 24555555
Q ss_pred cccCCc--------EEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcC
Q psy7829 444 NLHRGA--------KVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANIS 493 (511)
Q Consensus 444 ~l~~~~--------~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~ 493 (511)
+.+..+ +++ .-.+...+++.|+|+|.++.. ....+...+.+...+
T Consensus 94 ~~pdpw~k~~h~~~r~~-----~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~ 149 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRIT-----QPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSEND 149 (194)
T ss_pred ECCCcCCCCCccccccC-----CHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCC
Confidence 543221 111 124567788999999999776 444444445555443
No 222
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.79 E-value=2.2e-08 Score=102.86 Aligned_cols=102 Identities=24% Similarity=0.334 Sum_probs=75.9
Q ss_pred cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---cccccccccccccccccccchhhhhcc
Q psy7829 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANETIEIIPHILDLCYLNL 445 (511)
Q Consensus 369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~~~~l~~~~d~i~~~l 445 (511)
+...+|++|||+|||+|..+..+++.+++.++|+++|+++++++.+++++ +..+++++++|.....+. .
T Consensus 246 l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~--------~ 317 (445)
T PRK14904 246 LNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPE--------E 317 (445)
T ss_pred cCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccC--------C
Confidence 67788999999999999999999988766689999999988887666554 455678888876553221 1
Q ss_pred cCCcEEEEEcC-CccHH-------------------------HHHHHHHhCCCcEEEEh
Q psy7829 446 HRGAKVLEIGS-GSGYL-------------------------ATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 446 ~~~~~vLD~~~-g~g~~-------------------------~~~l~~~l~~~g~v~~~ 478 (511)
..+..++|..| |+|.+ ...+++.++|||+++-.
T Consensus 318 ~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvys 376 (445)
T PRK14904 318 QPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYA 376 (445)
T ss_pred CCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 23456678777 67753 34456778999998644
No 223
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.78 E-value=3.1e-08 Score=88.06 Aligned_cols=109 Identities=21% Similarity=0.231 Sum_probs=81.2
Q ss_pred HHHHHhhcCCCCC-EEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCe-EEEEccCCC
Q psy7829 123 AAENLKLHLVDGA-KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRV-RIVEADARE 200 (511)
Q Consensus 123 ~~~~l~~~~~~~~-~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v-~~~~~d~~~ 200 (511)
+++.|.+.+.+.. +|||||||||..+.++|+.+ |..+..-.|.++......+..+...+ .+|+ .-+..|+..
T Consensus 14 Il~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~-----~~Nv~~P~~lDv~~ 87 (204)
T PF06080_consen 14 ILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAG-----LPNVRPPLALDVSA 87 (204)
T ss_pred HHHHHHHHhCccCceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcC-----CcccCCCeEeecCC
Confidence 3444444455555 59999999999999999998 88888899999999888787776653 3343 345566664
Q ss_pred C-CC-------CCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEE
Q psy7829 201 G-YL-------PEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAP 237 (511)
Q Consensus 201 ~-~~-------~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~ 237 (511)
. ++ ..++||.|++.+++|-+ .+.+.+.|+|||.|++.
T Consensus 88 ~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 88 PPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred CCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 3 21 23589999999888644 36788999999999873
No 224
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.77 E-value=3.3e-08 Score=100.59 Aligned_cols=104 Identities=13% Similarity=0.133 Sum_probs=75.9
Q ss_pred cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---cccccccccccccccccccchhhhhcc
Q psy7829 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANETIEIIPHILDLCYLNL 445 (511)
Q Consensus 369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~~~~l~~~~d~i~~~l 445 (511)
+.+.+|.+|||+|||+|..|+.++..++++++|+++|+++++++.+++|+ +..+++++.+|+..... .. .-
T Consensus 233 l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~-~~-----~~ 306 (431)
T PRK14903 233 MELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTE-YV-----QD 306 (431)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhh-hh-----hc
Confidence 67789999999999999999999999877799999999988887766554 45567777777644211 00 11
Q ss_pred cCCcEEEEEcC-CccHH-------------------------HHHHHHHhCCCcEEEEh
Q psy7829 446 HRGAKVLEIGS-GSGYL-------------------------ATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 446 ~~~~~vLD~~~-g~g~~-------------------------~~~l~~~l~~~g~v~~~ 478 (511)
..+..++|..| |.|.+ ....++.++|||.++-.
T Consensus 307 ~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs 365 (431)
T PRK14903 307 TFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYS 365 (431)
T ss_pred cCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 23456678877 67663 33556788999987543
No 225
>PLN02244 tocopherol O-methyltransferase
Probab=98.77 E-value=3.5e-08 Score=97.63 Aligned_cols=111 Identities=15% Similarity=0.246 Sum_probs=76.2
Q ss_pred HHHHHHHHhhcCC-----CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----cccccccccc
Q psy7829 359 SIAHILDLCYLNL-----HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANE 429 (511)
Q Consensus 359 ~~~~~~~~~~~~~-----~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d 429 (511)
.+..++.. +.+ .++.+|||||||+|.++..+++.++ .+|+|+|+++.+++.++++.. .++++++.+|
T Consensus 101 ~~~~~l~~--~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g--~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D 176 (340)
T PLN02244 101 MIEESLAW--AGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYG--ANVKGITLSPVQAARANALAAAQGLSDKVSFQVAD 176 (340)
T ss_pred HHHHHHHh--cCCCcccCCCCCeEEEecCCCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcC
Confidence 34444554 455 6789999999999999999998874 799999999999888776543 2457888887
Q ss_pred cccc--ccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 430 TIEI--IPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 430 ~~~~--l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
..+. .+..||.++....- ..+ .....+...+.+.|+|||.++.+
T Consensus 177 ~~~~~~~~~~FD~V~s~~~~-~h~----~d~~~~l~e~~rvLkpGG~lvi~ 222 (340)
T PLN02244 177 ALNQPFEDGQFDLVWSMESG-EHM----PDKRKFVQELARVAAPGGRIIIV 222 (340)
T ss_pred cccCCCCCCCccEEEECCch-hcc----CCHHHHHHHHHHHcCCCcEEEEE
Confidence 6442 23456655432110 011 12334567788999999998764
No 226
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.76 E-value=3.1e-08 Score=95.29 Aligned_cols=105 Identities=24% Similarity=0.376 Sum_probs=73.7
Q ss_pred cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---cccccccccccccccc--cccchhhhh
Q psy7829 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANETIEII--PHILDLCYL 443 (511)
Q Consensus 369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~~~~l--~~~~d~i~~ 443 (511)
..++++++|||+|||+|..++.+++..++.++|+++|+++++++.++++. +.++++++.++..+.- +..+|.++.
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEE
Confidence 46789999999999999999988888877789999999999888877764 3456777766643311 123444433
Q ss_pred cccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 444 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 444 ~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
+. ++....+...+...+.+.|+|+|.++..
T Consensus 153 ~~-----v~~~~~d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 153 NC-----VINLSPDKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred cC-----cccCCCCHHHHHHHHHHHcCCCcEEEEE
Confidence 21 1111123345667888899999998763
No 227
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.76 E-value=9.7e-09 Score=91.05 Aligned_cols=107 Identities=26% Similarity=0.303 Sum_probs=84.5
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC--CCCCCc
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY--LPEAPY 208 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~f 208 (511)
.+.|.+|||.|+|-||.++..+++. ..+|+.+|.++..++.|.-|--..+ +...+++++.+|+.+.. ..+.+|
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rG--A~~VitvEkdp~VLeLa~lNPwSr~---l~~~~i~iilGD~~e~V~~~~D~sf 206 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERG--AIHVITVEKDPNVLELAKLNPWSRE---LFEIAIKIILGDAYEVVKDFDDESF 206 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcC--CcEEEEEeeCCCeEEeeccCCCCcc---ccccccEEecccHHHHHhcCCcccc
Confidence 4579999999999999999998875 3489999999999999876632222 23447899999987522 245889
Q ss_pred cEEEecCCCC---------chHHHHHhhcccCcEEEEEEccCC
Q psy7829 209 DVIYYGGCVS---------EVPSRVLNQLKKGGRILAPIGPMD 242 (511)
Q Consensus 209 D~I~~~~~~~---------~~~~~~~~~LkpgG~l~~~~~~~~ 242 (511)
|+|+-+++-- .+.+++++.|||||+++-.++.+.
T Consensus 207 DaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg 249 (287)
T COG2521 207 DAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPG 249 (287)
T ss_pred ceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC
Confidence 9999987752 234789999999999998888665
No 228
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=3.5e-08 Score=99.36 Aligned_cols=116 Identities=28% Similarity=0.276 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc
Q psy7829 118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD 197 (511)
Q Consensus 118 ~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 197 (511)
.+...+++.+. ..++.++||+-||.|.+++.+|+.. .+|+|+|+++++++.|++|++.++ .+|++|..+|
T Consensus 280 kl~~~a~~~~~--~~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~-----i~N~~f~~~~ 349 (432)
T COG2265 280 KLYETALEWLE--LAGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANG-----IDNVEFIAGD 349 (432)
T ss_pred HHHHHHHHHHh--hcCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcC-----CCcEEEEeCC
Confidence 34555555554 4577899999999999999999765 469999999999999999999985 6679999999
Q ss_pred CCCCCCC---CCCccEEEecCCCCchHH---HHHhhcccCcEEEEEEccCCC
Q psy7829 198 AREGYLP---EAPYDVIYYGGCVSEVPS---RVLNQLKKGGRILAPIGPMDD 243 (511)
Q Consensus 198 ~~~~~~~---~~~fD~I~~~~~~~~~~~---~~~~~LkpgG~l~~~~~~~~~ 243 (511)
+++.... ...+|.|+.+++-..+.+ +....++|-..+++++.+.+-
T Consensus 350 ae~~~~~~~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p~~IvYVSCNP~Tl 401 (432)
T COG2265 350 AEEFTPAWWEGYKPDVVVVDPPRAGADREVLKQLAKLKPKRIVYVSCNPATL 401 (432)
T ss_pred HHHHhhhccccCCCCEEEECCCCCCCCHHHHHHHHhcCCCcEEEEeCCHHHH
Confidence 8753322 247899999998765553 334456888899999887653
No 229
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.75 E-value=6.2e-08 Score=86.88 Aligned_cols=123 Identities=15% Similarity=0.146 Sum_probs=79.9
Q ss_pred cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc--ccccccccccccccccchhhhhccc
Q psy7829 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN--HIDLIANETIEIIPHILDLCYLNLH 446 (511)
Q Consensus 369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~--~v~~i~~d~~~~l~~~~d~i~~~l~ 446 (511)
+...++.+|||+|||+|.++..+++.. .+|+++|+++++++.+++|+... +++++.+|..+..+..+|.++.+.+
T Consensus 15 l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p 91 (179)
T TIGR00537 15 LRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPP 91 (179)
T ss_pred HHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCC
Confidence 445567899999999999999998765 38999999999999888776533 4666777765555556777766543
Q ss_pred CCc--------EEEEEcC--C------ccHHHHHHHHHhCCCcEEEEh--HHH-HHHHHHHHHhcCC
Q psy7829 447 RGA--------KVLEIGS--G------SGYLATLMAHLVGPTGHVTGL--EHM-MDIAIESIANIST 494 (511)
Q Consensus 447 ~~~--------~vLD~~~--g------~g~~~~~l~~~l~~~g~v~~~--~~m-l~~a~~~~~~~~~ 494 (511)
-.. ...++.- | .-.+...+.+.++|+|.++.+ ... .....+.+++.|+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf 158 (179)
T TIGR00537 92 YLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGF 158 (179)
T ss_pred CCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCC
Confidence 210 0011100 1 112345566788999998777 111 3344455555555
No 230
>KOG3010|consensus
Probab=98.74 E-value=1.9e-08 Score=90.07 Aligned_cols=98 Identities=16% Similarity=0.194 Sum_probs=68.1
Q ss_pred CCCC-EEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829 132 VDGA-KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV 210 (511)
Q Consensus 132 ~~~~-~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 210 (511)
.++. .++|+|||+|..++.++..+. +|+|+|+|+.|++.|++.....- ......+...+.......+++.|+
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y----~~t~~~ms~~~~v~L~g~e~SVDl 103 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTY----CHTPSTMSSDEMVDLLGGEESVDL 103 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCccc----ccCCccccccccccccCCCcceee
Confidence 3444 799999999988899999874 49999999999999887543210 001122222222222223589999
Q ss_pred EEecCCCCchH-----HHHHhhcccCcEEEE
Q psy7829 211 IYYGGCVSEVP-----SRVLNQLKKGGRILA 236 (511)
Q Consensus 211 I~~~~~~~~~~-----~~~~~~LkpgG~l~~ 236 (511)
|++..++|++. +.+.++||+.|.++.
T Consensus 104 I~~Aqa~HWFdle~fy~~~~rvLRk~Gg~ia 134 (261)
T KOG3010|consen 104 ITAAQAVHWFDLERFYKEAYRVLRKDGGLIA 134 (261)
T ss_pred ehhhhhHHhhchHHHHHHHHHHcCCCCCEEE
Confidence 99998888763 789999988774444
No 231
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.74 E-value=4.1e-08 Score=92.77 Aligned_cols=106 Identities=15% Similarity=0.207 Sum_probs=71.0
Q ss_pred CCCCCCEEEEEeccccHHHHHHHHHh-CCCcEEEEEcCCHHHHHHHHhhcc----ccccccccccccccccccchhhhhc
Q psy7829 370 NLHRGAKVLEIGSGSGYLATLMAHLV-GPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANETIEIIPHILDLCYLN 444 (511)
Q Consensus 370 ~~~~~~~vLdiG~G~G~~~~~la~~~-~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d~~~~l~~~~d~i~~~ 444 (511)
.+.++.+|||+|||+|..+..+++.+ .|+.+|+++|+++++++.+++++. ..++++++++..+.....+|.+..+
T Consensus 53 ~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~ 132 (247)
T PRK15451 53 FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLN 132 (247)
T ss_pred hCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehh
Confidence 35688999999999999999998754 467899999999999999888775 2357888777544322223322221
Q ss_pred ccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 445 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 445 l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
.. -..++ ....-.+...+++.|+|||.++..
T Consensus 133 ~~--l~~l~-~~~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 133 FT--LQFLE-PSERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred hH--HHhCC-HHHHHHHHHHHHHhcCCCCEEEEE
Confidence 10 00000 000123567788899999998764
No 232
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.74 E-value=1.1e-07 Score=94.05 Aligned_cols=141 Identities=16% Similarity=0.102 Sum_probs=87.4
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc--cccccccccc
Q psy7829 354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN--HIDLIANETI 431 (511)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~--~v~~i~~d~~ 431 (511)
|.+...+..++. .+.++.+|||+|||+|.+++.+++.. ++.+|+++|+++++++.+++|.... +++++++|..
T Consensus 236 peTE~LVe~aL~----~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~ 310 (423)
T PRK14966 236 PETEHLVEAVLA----RLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGARVEFAHGSWF 310 (423)
T ss_pred ccHHHHHHHhhh----ccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchh
Confidence 445555544443 33467799999999999999999876 6689999999999998888776532 5778888764
Q ss_pred ccc---cccchhhhhcccCCc----------------EEEEEc-CCcc---HHHHHHHHHhCCCcEEEEh--HHHHHHHH
Q psy7829 432 EII---PHILDLCYLNLHRGA----------------KVLEIG-SGSG---YLATLMAHLVGPTGHVTGL--EHMMDIAI 486 (511)
Q Consensus 432 ~~l---~~~~d~i~~~l~~~~----------------~vLD~~-~g~g---~~~~~l~~~l~~~g~v~~~--~~ml~~a~ 486 (511)
+.. ...+|.++.|.+.-. ..|+-| .|.. .+...+.+.|+|+|.++.. ..-.+..+
T Consensus 311 e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~ 390 (423)
T PRK14966 311 DTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVR 390 (423)
T ss_pred ccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHH
Confidence 431 235788887764211 012111 1111 2233445678999987654 32233444
Q ss_pred HHHHhcCCCceEE
Q psy7829 487 ESIANISTNHIDL 499 (511)
Q Consensus 487 ~~~~~~~~~~i~~ 499 (511)
+.+.+.|+..+++
T Consensus 391 ~ll~~~Gf~~v~v 403 (423)
T PRK14966 391 GVLAENGFSGVET 403 (423)
T ss_pred HHHHHCCCcEEEE
Confidence 4455555544443
No 233
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.74 E-value=8e-08 Score=90.66 Aligned_cols=138 Identities=15% Similarity=0.158 Sum_probs=89.8
Q ss_pred CCCHHHHHHHHHHhhcC-CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccc
Q psy7829 354 PSSERSIAHILDLCYLN-LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIE 432 (511)
Q Consensus 354 ~~~~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~ 432 (511)
+.+...+..++.. +. ..++.+|||+|||+|.+++.+++.. +..+|+++|+++++++.+++|+...+++++++|..+
T Consensus 68 ~~Te~Lv~~~l~~--~~~~~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~ 144 (251)
T TIGR03704 68 RRTEFLVDEAAAL--ARPRSGTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYD 144 (251)
T ss_pred ccHHHHHHHHHHh--hcccCCCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechh
Confidence 3455556555553 22 2234689999999999999999886 457999999999999998888876667788887655
Q ss_pred ccc----ccchhhhhcccCCc--E-------------EEEEcCC-cc-----HHHHHHHHHhCCCcEEEEh--HHHHHHH
Q psy7829 433 IIP----HILDLCYLNLHRGA--K-------------VLEIGSG-SG-----YLATLMAHLVGPTGHVTGL--EHMMDIA 485 (511)
Q Consensus 433 ~l~----~~~d~i~~~l~~~~--~-------------vLD~~~g-~g-----~~~~~l~~~l~~~g~v~~~--~~ml~~a 485 (511)
.++ ..+|.++.|.+--. . -..+..| .| .+...+.+.|+|+|.++.. .......
T Consensus 145 ~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v 224 (251)
T TIGR03704 145 ALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLA 224 (251)
T ss_pred hcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHH
Confidence 432 34677766653210 0 0011122 22 3344556788999998866 3334455
Q ss_pred HHHHHhcCC
Q psy7829 486 IESIANIST 494 (511)
Q Consensus 486 ~~~~~~~~~ 494 (511)
.+.+.+.++
T Consensus 225 ~~~l~~~g~ 233 (251)
T TIGR03704 225 VEAFARAGL 233 (251)
T ss_pred HHHHHHCCC
Confidence 556666666
No 234
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.73 E-value=1.2e-07 Score=89.01 Aligned_cols=118 Identities=14% Similarity=0.193 Sum_probs=80.7
Q ss_pred HHHHHHHHHhhcCC-CCCEEEEEcCCcc----HHHHHHHHHhC----CCceEEEEeCCHHHHHHHHHHH-----------
Q psy7829 119 QIADAAENLKLHLV-DGAKVLDLGSGSG----YQTCVFAHMVG----PTGKVIGVEHIPELIEASLRNI----------- 178 (511)
Q Consensus 119 ~~~~~~~~l~~~~~-~~~~vLDiG~G~G----~~~~~la~~~~----~~~~v~~iD~~~~~~~~a~~~~----------- 178 (511)
+...++..+....+ ..-+|+-+||+|| .+++.+.+..+ ...+|+|+|+|..+++.|+.-.
T Consensus 81 l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~ 160 (268)
T COG1352 81 LRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLP 160 (268)
T ss_pred HHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCC
Confidence 33444544432222 3669999999999 35556666653 2578999999999999998311
Q ss_pred --------hccCCC-c----CCCCCeEEEEccCCCCCCCCCCccEEEecCCC--------CchHHHHHhhcccCcEEEE
Q psy7829 179 --------SKGNKD-L----LDSGRVRIVEADAREGYLPEAPYDVIYYGGCV--------SEVPSRVLNQLKKGGRILA 236 (511)
Q Consensus 179 --------~~~~~~-~----~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~--------~~~~~~~~~~LkpgG~l~~ 236 (511)
.+.+.+ + -....|.|...|+....+..+.||+|+|-+++ ..+...++..|+|||.|++
T Consensus 161 ~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 161 PELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFL 239 (268)
T ss_pred HHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 011100 1 01245889999988655344789999998887 3456789999999999997
No 235
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.73 E-value=4.5e-08 Score=96.30 Aligned_cols=118 Identities=15% Similarity=0.231 Sum_probs=84.1
Q ss_pred cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---cccccccccccccccc----cccchhh
Q psy7829 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANETIEII----PHILDLC 441 (511)
Q Consensus 369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~~~~l----~~~~d~i 441 (511)
+....+..+||||||+|.+++.+|+.. |+..++|+|++..++.++.+++ +..|+.++++|+.... +..+|.+
T Consensus 118 ~~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I 196 (390)
T PRK14121 118 ISKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKI 196 (390)
T ss_pred hcCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEE
Confidence 455667899999999999999999997 7899999999987777665544 4678899998875432 2445666
Q ss_pred hhcccCCc------EEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhc
Q psy7829 442 YLNLHRGA------KVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANI 492 (511)
Q Consensus 442 ~~~l~~~~------~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~ 492 (511)
+.+.+..| +++ .-.+...+++.|+|||.+... ....+.+.+.+.+.
T Consensus 197 ~lnFPdPW~KkrHRRlv-----~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~ 251 (390)
T PRK14121 197 FVHFPVPWDKKPHRRVI-----SEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKL 251 (390)
T ss_pred EEeCCCCccccchhhcc-----HHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhC
Confidence 55543322 121 235677888999999998875 55555555555444
No 236
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.73 E-value=6.6e-08 Score=99.38 Aligned_cols=99 Identities=20% Similarity=0.224 Sum_probs=72.6
Q ss_pred cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---ccccccccccccccccc---ccchhhh
Q psy7829 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANETIEIIP---HILDLCY 442 (511)
Q Consensus 369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~~~~l~---~~~d~i~ 442 (511)
+.+.++++|||+|||+|..++.+++..+++++|+++|+++++++.+++|+ +..+++++.+|.....+ ..+|.
T Consensus 246 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~-- 323 (444)
T PRK14902 246 LDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDK-- 323 (444)
T ss_pred hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCE--
Confidence 56788999999999999999999998866799999999988877666554 45668888888655321 22333
Q ss_pred hcccCCcEEEEEcC-CccH-------------------------HHHHHHHHhCCCcEEE
Q psy7829 443 LNLHRGAKVLEIGS-GSGY-------------------------LATLMAHLVGPTGHVT 476 (511)
Q Consensus 443 ~~l~~~~~vLD~~~-g~g~-------------------------~~~~l~~~l~~~g~v~ 476 (511)
.++|..| |.|. +.....+.++|||.++
T Consensus 324 -------Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lv 376 (444)
T PRK14902 324 -------ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILV 376 (444)
T ss_pred -------EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 4455544 4442 3445567789999987
No 237
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.71 E-value=1.1e-07 Score=94.87 Aligned_cols=111 Identities=20% Similarity=0.189 Sum_probs=84.2
Q ss_pred HHHHHHHHHhhcCC-CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc
Q psy7829 119 QIADAAENLKLHLV-DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD 197 (511)
Q Consensus 119 ~~~~~~~~l~~~~~-~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 197 (511)
+...+++.+. .. ++.+|||++||+|..++.++...+ ..+|+++|+++.+++.+++|++.++ .++++++++|
T Consensus 44 l~~~v~~~~~--~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~-----~~~~~v~~~D 115 (382)
T PRK04338 44 ISVLVLRAFG--PKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNG-----LENEKVFNKD 115 (382)
T ss_pred HHHHHHHHHH--hhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhC-----CCceEEEhhh
Confidence 4444455443 22 356899999999999999998763 4579999999999999999998875 4567899999
Q ss_pred CCCCCCCCCCccEEEecCCCC--chHHHHHhhcccCcEEEEE
Q psy7829 198 AREGYLPEAPYDVIYYGGCVS--EVPSRVLNQLKKGGRILAP 237 (511)
Q Consensus 198 ~~~~~~~~~~fD~I~~~~~~~--~~~~~~~~~LkpgG~l~~~ 237 (511)
+.........||+|++++.-. .+.+.+.+.+++||.++++
T Consensus 116 a~~~l~~~~~fD~V~lDP~Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 116 ANALLHEERKFDVVDIDPFGSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred HHHHHhhcCCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEE
Confidence 865332135799999986422 3345667789999999997
No 238
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.71 E-value=9.7e-08 Score=90.04 Aligned_cols=91 Identities=26% Similarity=0.358 Sum_probs=75.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV 210 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 210 (511)
..+..+|+|||+|+|.++..+++++ |+.+++..|. |+.++.+++ . ++|+++.+|+.+.++ . +|+
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~--~---------~rv~~~~gd~f~~~P--~-~D~ 161 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE--A---------DRVEFVPGDFFDPLP--V-ADV 161 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH--T---------TTEEEEES-TTTCCS--S-ESE
T ss_pred ccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc--c---------cccccccccHHhhhc--c-ccc
Confidence 4566789999999999999999998 8999999999 889988887 1 279999999985443 3 999
Q ss_pred EEecCCCCc--------hHHHHHhhcccC--cEEEEE
Q psy7829 211 IYYGGCVSE--------VPSRVLNQLKKG--GRILAP 237 (511)
Q Consensus 211 I~~~~~~~~--------~~~~~~~~Lkpg--G~l~~~ 237 (511)
++....+|. +++++++.|+|| |+|++.
T Consensus 162 ~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 162 YLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp EEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred eeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 999998865 358899999999 999984
No 239
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.71 E-value=9e-08 Score=84.16 Aligned_cols=105 Identities=20% Similarity=0.320 Sum_probs=79.6
Q ss_pred HHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccccccccccccc-ccchh
Q psy7829 362 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIP-HILDL 440 (511)
Q Consensus 362 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l~-~~~d~ 440 (511)
.++.. ..+.+..+|.|+|||+|..|..|+++. |...++|||-|.+|+.+|++++ +++.|..+|...+-+ ...+.
T Consensus 21 dLla~--Vp~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rl--p~~~f~~aDl~~w~p~~~~dl 95 (257)
T COG4106 21 DLLAR--VPLERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRL--PDATFEEADLRTWKPEQPTDL 95 (257)
T ss_pred HHHhh--CCccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhC--CCCceecccHhhcCCCCccch
Confidence 44444 788899999999999999999999999 8899999999999999996654 568888888766654 24555
Q ss_pred hhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEE
Q psy7829 441 CYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVT 476 (511)
Q Consensus 441 i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~ 476 (511)
++.|- ++.+-...+.+...+...|.|||.+-
T Consensus 96 lfaNA-----vlqWlpdH~~ll~rL~~~L~Pgg~LA 126 (257)
T COG4106 96 LFANA-----VLQWLPDHPELLPRLVSQLAPGGVLA 126 (257)
T ss_pred hhhhh-----hhhhccccHHHHHHHHHhhCCCceEE
Confidence 55542 33344445566677788888976553
No 240
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.70 E-value=8.7e-08 Score=97.92 Aligned_cols=104 Identities=13% Similarity=0.073 Sum_probs=72.1
Q ss_pred cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccc--cc--ccccccccccccchhhhhc
Q psy7829 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHI--DL--IANETIEIIPHILDLCYLN 444 (511)
Q Consensus 369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v--~~--i~~d~~~~l~~~~d~i~~~ 444 (511)
+.+.+|++|||+|||+|+.|..+++.++ +++|+++|+++++++.+.+|+...++ .+ +.+|...... ....
T Consensus 234 L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~-----~~~~ 307 (426)
T TIGR00563 234 LAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ-----WAEN 307 (426)
T ss_pred hCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc-----cccc
Confidence 6778999999999999999999999884 68999999999988887777653332 22 4444322110 0011
Q ss_pred ccCCcEEEEEcC-CccH-------------------------HHHHHHHHhCCCcEEEEh
Q psy7829 445 LHRGAKVLEIGS-GSGY-------------------------LATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 445 l~~~~~vLD~~~-g~g~-------------------------~~~~l~~~l~~~g~v~~~ 478 (511)
-..+..++|..| |.|. +....++.++|||.++-.
T Consensus 308 ~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvys 367 (426)
T TIGR00563 308 EQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYA 367 (426)
T ss_pred cccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 234556778766 6665 344566778999998744
No 241
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.70 E-value=2.8e-08 Score=92.56 Aligned_cols=108 Identities=16% Similarity=0.282 Sum_probs=76.6
Q ss_pred HHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----cccccccccccccccc
Q psy7829 360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANETIEIIP 435 (511)
Q Consensus 360 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d~~~~l~ 435 (511)
...++.. .+......+||||||++||.|+++|+.++++++|+++|++++.++.|++++. .++|+++.+++.+.++
T Consensus 67 ~g~lL~~-l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~ 145 (247)
T PLN02589 67 EGQFLNM-LLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLD 145 (247)
T ss_pred HHHHHHH-HHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHH
Confidence 3354544 2556678899999999999999999988778999999999888887776664 3568899998877765
Q ss_pred c---------cchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEE
Q psy7829 436 H---------ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVT 476 (511)
Q Consensus 436 ~---------~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~ 476 (511)
. .||.+|.+-.+.... .....+.+.++|||-|+
T Consensus 146 ~l~~~~~~~~~fD~iFiDadK~~Y~--------~y~~~~l~ll~~GGviv 187 (247)
T PLN02589 146 QMIEDGKYHGTFDFIFVDADKDNYI--------NYHKRLIDLVKVGGVIG 187 (247)
T ss_pred HHHhccccCCcccEEEecCCHHHhH--------HHHHHHHHhcCCCeEEE
Confidence 4 455555544333221 12234457788876654
No 242
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.70 E-value=9.9e-08 Score=94.13 Aligned_cols=120 Identities=12% Similarity=0.140 Sum_probs=84.0
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccc
Q psy7829 354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANET 430 (511)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~ 430 (511)
+..+.....++.+ ..++++++|||.|||+|.+++.++... .+++|+|+++.+++.+++|+. ..+++++.+|.
T Consensus 165 ~l~~~la~~~~~l--~~~~~g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~ 239 (329)
T TIGR01177 165 SMDPKLARAMVNL--ARVTEGDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDA 239 (329)
T ss_pred CCCHHHHHHHHHH--hCCCCcCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecch
Confidence 4566777777776 677899999999999999998877643 799999999999887776654 45577777876
Q ss_pred cccc--cccchhhhhcccCCcEEEEEcCC----ccHHHHHHHHHhCCCcEEEEh
Q psy7829 431 IEII--PHILDLCYLNLHRGAKVLEIGSG----SGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 431 ~~~l--~~~~d~i~~~l~~~~~vLD~~~g----~g~~~~~l~~~l~~~g~v~~~ 478 (511)
.... ...+|.++.+.+-+.+...-+-. ...+...+.+.|+|+|+++.+
T Consensus 240 ~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 240 TKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred hcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 5432 24567777665544432211110 123455667889999988766
No 243
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.69 E-value=7.4e-08 Score=98.94 Aligned_cols=71 Identities=20% Similarity=0.305 Sum_probs=56.5
Q ss_pred HHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cccccccccccccc
Q psy7829 358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEI 433 (511)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~ 433 (511)
..+..++.. +.+.++.+|||+|||+|.+++.+|+.. .+|+|+|+++++++.+++|.. ..|++++.+|..+.
T Consensus 284 ~l~~~vl~~--l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~ 357 (443)
T PRK13168 284 KMVARALEW--LDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEED 357 (443)
T ss_pred HHHHHHHHH--hcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHh
Confidence 444445554 566788999999999999999999876 799999999999988887764 45688888886543
No 244
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=1.4e-07 Score=81.72 Aligned_cols=132 Identities=18% Similarity=0.179 Sum_probs=86.3
Q ss_pred CCCCHHHHHHHHHHhhc-CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc--cccccccccc
Q psy7829 353 GPSSERSIAHILDLCYL-NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS--TNHIDLIANE 429 (511)
Q Consensus 353 ~~~~~~~~~~~~~~~~~-~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~--~~~v~~i~~d 429 (511)
.++.+..++.++..+.+ ..-.|.+|+|+|||||.+++..+... + ..|+++|++++.++.+++|.+ ..+++++.+|
T Consensus 24 Y~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lG-a-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~d 101 (198)
T COG2263 24 YRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLG-A-SRVLAVDIDPEALEIARANAEELLGDVEFVVAD 101 (198)
T ss_pred cCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcC-C-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcc
Confidence 35566777787777533 33368899999999999999987554 5 899999999999988888776 4457888887
Q ss_pred ccccccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh--HHHHHHHHHHHHhcC
Q psy7829 430 TIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL--EHMMDIAIESIANIS 493 (511)
Q Consensus 430 ~~~~l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~--~~ml~~a~~~~~~~~ 493 (511)
..+ ....++.+.+|.+-|...- + .-...+.+.+.-+-.|+.+ ....+..++.++..|
T Consensus 102 v~~-~~~~~dtvimNPPFG~~~r----h--aDr~Fl~~Ale~s~vVYsiH~a~~~~f~~~~~~~~G 160 (198)
T COG2263 102 VSD-FRGKFDTVIMNPPFGSQRR----H--ADRPFLLKALEISDVVYSIHKAGSRDFVEKFAADLG 160 (198)
T ss_pred hhh-cCCccceEEECCCCccccc----c--CCHHHHHHHHHhhheEEEeeccccHHHHHHHHHhcC
Confidence 544 4445566677766665421 1 1112333333333456666 334445555566655
No 245
>PRK04457 spermidine synthase; Provisional
Probab=98.68 E-value=1.5e-07 Score=89.29 Aligned_cols=106 Identities=17% Similarity=0.238 Sum_probs=77.1
Q ss_pred CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----ccccccccccccccc---ccchhhhh
Q psy7829 371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANETIEIIP---HILDLCYL 443 (511)
Q Consensus 371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~~~l~---~~~d~i~~ 443 (511)
.+++.+|||||||+|.++..+++.. |..+|+++|+++++++.+++++.. ++++++.+|+.+.+. ..+|.++.
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence 4567899999999999999999887 778999999999999999988763 568888888766543 34566555
Q ss_pred cccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 444 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 444 ~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
+...+..+.. ..-+-.+...+.+.|+|+|.++..
T Consensus 143 D~~~~~~~~~-~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 143 DGFDGEGIID-ALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred eCCCCCCCcc-ccCcHHHHHHHHHhcCCCcEEEEE
Confidence 4322211110 111345667778889999998763
No 246
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.68 E-value=4.9e-08 Score=92.82 Aligned_cols=108 Identities=19% Similarity=0.275 Sum_probs=72.3
Q ss_pred HHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----ccccccccccccc--
Q psy7829 360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANETIEI-- 433 (511)
Q Consensus 360 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~~~-- 433 (511)
...++.. +. .++.+|||+|||+|.++..+++.. .+|+++|+++++++.++++... .++++++++..+.
T Consensus 34 ~~~~l~~--l~-~~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~ 107 (255)
T PRK11036 34 LDRLLAE--LP-PRPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ 107 (255)
T ss_pred HHHHHHh--cC-CCCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh
Confidence 3344444 33 567899999999999999999764 7999999999999988777652 4577777765442
Q ss_pred -ccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 434 -IPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 434 -l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
.+..+|.++... ++..-..+-.+...+.+.|+|+|.++.+
T Consensus 108 ~~~~~fD~V~~~~-----vl~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 108 HLETPVDLILFHA-----VLEWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred hcCCCCCEEEehh-----HHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 223344443211 1111122334566788899999998754
No 247
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.67 E-value=1.7e-07 Score=91.32 Aligned_cols=105 Identities=21% Similarity=0.218 Sum_probs=73.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCc----C-CCCCeEEEEccCCC-----CC
Q psy7829 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDL----L-DSGRVRIVEADARE-----GY 202 (511)
Q Consensus 133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~----~-~~~~v~~~~~d~~~-----~~ 202 (511)
++.+|||+|||-|.-..-.... .-..++|+|++...++.|+++........ . ..-...|+.+|... .+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 7889999999999877777665 35689999999999999999983311000 0 01135788888763 12
Q ss_pred CC-CCCccEEEecCCCCch----------HHHHHhhcccCcEEEEEEc
Q psy7829 203 LP-EAPYDVIYYGGCVSEV----------PSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 203 ~~-~~~fD~I~~~~~~~~~----------~~~~~~~LkpgG~l~~~~~ 239 (511)
.+ ...||+|-|..++|.. +.++.+.|+|||+++..+.
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 22 2589999999888654 4789999999999998765
No 248
>PRK08317 hypothetical protein; Provisional
Probab=98.67 E-value=1.4e-07 Score=88.95 Aligned_cols=111 Identities=22% Similarity=0.331 Sum_probs=76.2
Q ss_pred HHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc--cccccccccccccc--ccc
Q psy7829 360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI--STNHIDLIANETIE--IIP 435 (511)
Q Consensus 360 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~--~~~~v~~i~~d~~~--~l~ 435 (511)
...++.. +.+.++.+|||+|||+|..+..++..+++.++++++|++++++..++++. ...++.++..|... ..+
T Consensus 8 ~~~~~~~--~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~ 85 (241)
T PRK08317 8 RARTFEL--LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPD 85 (241)
T ss_pred HHHHHHH--cCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCC
Confidence 3445555 77889999999999999999999998867789999999999888877762 24556776665432 122
Q ss_pred ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEE
Q psy7829 436 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG 477 (511)
Q Consensus 436 ~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~ 477 (511)
..+|.+.... ++.....+..+...+.+.++|+|.++.
T Consensus 86 ~~~D~v~~~~-----~~~~~~~~~~~l~~~~~~L~~gG~l~~ 122 (241)
T PRK08317 86 GSFDAVRSDR-----VLQHLEDPARALAEIARVLRPGGRVVV 122 (241)
T ss_pred CCceEEEEec-----hhhccCCHHHHHHHHHHHhcCCcEEEE
Confidence 3344433221 111223445566778888899988764
No 249
>KOG1661|consensus
Probab=98.66 E-value=8.5e-08 Score=83.92 Aligned_cols=114 Identities=25% Similarity=0.382 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcE-EEEEcCCHHHHHHHHhhccccc------------
Q psy7829 356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGH-VTGLEHMMDIAIESIANISTNH------------ 422 (511)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~id~~~~~~~~~~~~~~~~~------------ 422 (511)
.|..-+.+++.+.-.+.||.+.||+|+||||++..++..+++++. ++|||..++.++.+.+|+....
T Consensus 65 Ap~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~ 144 (237)
T KOG1661|consen 65 APHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRG 144 (237)
T ss_pred chHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccC
Confidence 445556667762234899999999999999999999987766555 4999999999998888876321
Q ss_pred -cccccccccccccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 423 -IDLIANETIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 423 -v~~i~~d~~~~l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
+.++.+|..... ....+-.+|- +|++.-.+...+...|+++|+++.-
T Consensus 145 ~l~ivvGDgr~g~--------~e~a~YDaIh-vGAaa~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 145 ELSIVVGDGRKGY--------AEQAPYDAIH-VGAAASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred ceEEEeCCccccC--------CccCCcceEE-EccCccccHHHHHHhhccCCeEEEe
Confidence 223333332222 1222333343 7777777888999999999998754
No 250
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.66 E-value=3e-08 Score=89.49 Aligned_cols=99 Identities=21% Similarity=0.244 Sum_probs=70.4
Q ss_pred CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccc--ccccccccccc--ccchhhhhcccC
Q psy7829 372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHID--LIANETIEIIP--HILDLCYLNLHR 447 (511)
Q Consensus 372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~--~i~~d~~~~l~--~~~d~i~~~l~~ 447 (511)
-+|.+|||+|||-|.++..+|+.. ..|+|+|++++.++.++.....+.+. ..+....+... ..||.+..
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~c---- 130 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTC---- 130 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEE----
Confidence 379999999999999999999775 89999999999998887665544433 44443333322 24554332
Q ss_pred CcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 448 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 448 ~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
..||+--..+..+....++.++|+|.+..-
T Consensus 131 -mEVlEHv~dp~~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 131 -MEVLEHVPDPESFLRACAKLVKPGGILFLS 160 (243)
T ss_pred -hhHHHccCCHHHHHHHHHHHcCCCcEEEEe
Confidence 234444456667778889999999988755
No 251
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.66 E-value=5.1e-08 Score=92.46 Aligned_cols=103 Identities=23% Similarity=0.247 Sum_probs=77.0
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC---CCCCc
Q psy7829 132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL---PEAPY 208 (511)
Q Consensus 132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~f 208 (511)
..+.+|||+.|=+|.++...+... ..+|+.+|.|..+++.+++|+..|+ +...+++|++.|+.+.+. ..++|
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg---~~~~~~~~~~~Dvf~~l~~~~~~~~f 196 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNG---LDLDRHRFIQGDVFKFLKRLKKGGRF 196 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT----CCTCEEEEES-HHHHHHHHHHTT-E
T ss_pred cCCCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcC---CCccceEEEecCHHHHHHHHhcCCCC
Confidence 358899999999999999877643 4579999999999999999999987 345689999999875321 24689
Q ss_pred cEEEecCCC------------CchHHHHHhhcccCcEEEEEEc
Q psy7829 209 DVIYYGGCV------------SEVPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 209 D~I~~~~~~------------~~~~~~~~~~LkpgG~l~~~~~ 239 (511)
|+|++++|. ..+...+.++|+|||.|++...
T Consensus 197 D~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 197 DLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp EEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 999999886 2234678899999999887543
No 252
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.64 E-value=1.3e-07 Score=86.64 Aligned_cols=100 Identities=11% Similarity=0.203 Sum_probs=65.1
Q ss_pred CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccccccccccc----------ccccchh
Q psy7829 371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEI----------IPHILDL 440 (511)
Q Consensus 371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~----------l~~~~d~ 440 (511)
++++.+|||+|||+|..+..+++..++.++|++||+++. ...++++++++|.... .+..+|.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~--------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~ 120 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM--------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQV 120 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc--------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCE
Confidence 578999999999999999999999877789999999871 1235678888875432 1233555
Q ss_pred hhhcccCCc---EEEEEcCC---ccHHHHHHHHHhCCCcEEEEh
Q psy7829 441 CYLNLHRGA---KVLEIGSG---SGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 441 i~~~l~~~~---~vLD~~~g---~g~~~~~l~~~l~~~g~v~~~ 478 (511)
+..+..+.. ...|...- .-.+...+.+.|+|||.++..
T Consensus 121 V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 121 VMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred EecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 554432221 00010000 012345667889999998874
No 253
>PLN02823 spermine synthase
Probab=98.64 E-value=2.6e-07 Score=90.24 Aligned_cols=105 Identities=18% Similarity=0.248 Sum_probs=80.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCccEE
Q psy7829 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPYDVI 211 (511)
Q Consensus 133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I 211 (511)
...+||.||+|.|..+..+.+.. +..+|+.+|+++.+++.|++.+...+.. +..++++++.+|+..... ..++||+|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~-~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREA-FCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhccccccc-ccCCceEEEEChhHHHHhhCCCCccEE
Confidence 46789999999999999888764 4568999999999999999997653211 245789999999875332 23689999
Q ss_pred EecCCCC------------chHH-HHHhhcccCcEEEEEEc
Q psy7829 212 YYGGCVS------------EVPS-RVLNQLKKGGRILAPIG 239 (511)
Q Consensus 212 ~~~~~~~------------~~~~-~~~~~LkpgG~l~~~~~ 239 (511)
+++..-+ .+.+ .+.+.|+|||.+++...
T Consensus 181 i~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 181 IGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred EecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 9984221 1335 78899999999987543
No 254
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.64 E-value=1.2e-07 Score=89.21 Aligned_cols=103 Identities=14% Similarity=0.201 Sum_probs=69.1
Q ss_pred CCCCCCEEEEEeccccHHHHHHHHHh-CCCcEEEEEcCCHHHHHHHHhhccc----cccccccccccccccccchhhhhc
Q psy7829 370 NLHRGAKVLEIGSGSGYLATLMAHLV-GPTGHVTGLEHMMDIAIESIANIST----NHIDLIANETIEIIPHILDLCYLN 444 (511)
Q Consensus 370 ~~~~~~~vLdiG~G~G~~~~~la~~~-~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~~~l~~~~d~i~~~ 444 (511)
.+.++.+|||+|||+|..+..+++.+ .|+.+++++|+++++++.+++++.. .+++++++|........++.+...
T Consensus 50 ~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~ 129 (239)
T TIGR00740 50 FVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILN 129 (239)
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeee
Confidence 34678899999999999999999875 3678999999999999888776542 356777776544321122221111
Q ss_pred ccCCcEEEEEcCC---ccHHHHHHHHHhCCCcEEEEh
Q psy7829 445 LHRGAKVLEIGSG---SGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 445 l~~~~~vLD~~~g---~g~~~~~l~~~l~~~g~v~~~ 478 (511)
. ++.. +. ...+...+.+.|+|+|.++..
T Consensus 130 ~-----~l~~-~~~~~~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 130 F-----TLQF-LPPEDRIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred c-----chhh-CCHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 0 0000 11 134456778889999988766
No 255
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.64 E-value=5.6e-08 Score=86.70 Aligned_cols=118 Identities=21% Similarity=0.196 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc
Q psy7829 118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD 197 (511)
Q Consensus 118 ~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 197 (511)
.+...+.+.|....-++.+|||+.||||.+++..+.+. ..+|+.+|.++.++...++|++..+ ..++++++..|
T Consensus 27 rvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~----~~~~~~v~~~d 100 (183)
T PF03602_consen 27 RVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLG----LEDKIRVIKGD 100 (183)
T ss_dssp HHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-----GGGEEEEESS
T ss_pred HHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhC----CCcceeeeccC
Confidence 35555666666321378999999999999999888775 4589999999999999999999865 23368999999
Q ss_pred CCCCC----CCCCCccEEEecCCCCch------HHHHH--hhcccCcEEEEEEccC
Q psy7829 198 AREGY----LPEAPYDVIYYGGCVSEV------PSRVL--NQLKKGGRILAPIGPM 241 (511)
Q Consensus 198 ~~~~~----~~~~~fD~I~~~~~~~~~------~~~~~--~~LkpgG~l~~~~~~~ 241 (511)
....+ ....+||+|++++|+..- +..+. .+|+++|.+++.....
T Consensus 101 ~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 101 AFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred HHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 65322 124789999999998642 23343 6889999999987654
No 256
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.63 E-value=4.3e-07 Score=87.55 Aligned_cols=144 Identities=19% Similarity=0.249 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccc
Q psy7829 354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANET 430 (511)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~ 430 (511)
+.+...+..++.. ....++.+|||+|||+|..++.+++.. ++.+|+++|+++.+++.+.+|.. ..++.++.+|.
T Consensus 91 ~~te~l~~~~~~~--~~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~ 167 (275)
T PRK09328 91 PETEELVEWALEA--LLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDW 167 (275)
T ss_pred CCcHHHHHHHHHh--ccccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccc
Confidence 5666777666544 455678899999999999999999887 67899999999998888887754 45678887776
Q ss_pred ccccc-ccchhhhhcccCCcE---------E------EEEcCCcc------HHHHHHHHHhCCCcEEEEh--HHHHHHHH
Q psy7829 431 IEIIP-HILDLCYLNLHRGAK---------V------LEIGSGSG------YLATLMAHLVGPTGHVTGL--EHMMDIAI 486 (511)
Q Consensus 431 ~~~l~-~~~d~i~~~l~~~~~---------v------LD~~~g~g------~~~~~l~~~l~~~g~v~~~--~~ml~~a~ 486 (511)
.+..+ ..+|.++.+.+-... + ..+..|.. .+...+.+.|+|+|.++.. ..-.+..+
T Consensus 168 ~~~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~ 247 (275)
T PRK09328 168 FEPLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVR 247 (275)
T ss_pred cCcCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHH
Confidence 54332 456766655331110 0 00111111 1233445788999988755 22223344
Q ss_pred HHHHhcCCCceEEE
Q psy7829 487 ESIANISTNHIDLI 500 (511)
Q Consensus 487 ~~~~~~~~~~i~~i 500 (511)
+.+.+.|+.++++.
T Consensus 248 ~~l~~~gf~~v~~~ 261 (275)
T PRK09328 248 ALLAAAGFADVETR 261 (275)
T ss_pred HHHHhCCCceeEEe
Confidence 45555666555554
No 257
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.63 E-value=2.3e-07 Score=94.85 Aligned_cols=102 Identities=16% Similarity=0.207 Sum_probs=71.4
Q ss_pred cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc--ccccccccccccccccchhhhhccc
Q psy7829 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN--HIDLIANETIEIIPHILDLCYLNLH 446 (511)
Q Consensus 369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~--~v~~i~~d~~~~l~~~~d~i~~~l~ 446 (511)
+.+.+|++|||+|||+|..++.+++.. ++++|+++|+++++++.+++|+... ++.++++|..+... . ...-.
T Consensus 240 l~~~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~-~----~~~~~ 313 (427)
T PRK10901 240 LAPQNGERVLDACAAPGGKTAHILELA-PQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQ-W----WDGQP 313 (427)
T ss_pred cCCCCCCEEEEeCCCCChHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchh-h----cccCC
Confidence 677899999999999999999999887 4479999999999888877776532 25666776543211 0 00112
Q ss_pred CCcEEEEEcC-CccH-------------------------HHHHHHHHhCCCcEEE
Q psy7829 447 RGAKVLEIGS-GSGY-------------------------LATLMAHLVGPTGHVT 476 (511)
Q Consensus 447 ~~~~vLD~~~-g~g~-------------------------~~~~l~~~l~~~g~v~ 476 (511)
.+..++|..| |.|. +.....+.|+|||+++
T Consensus 314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lv 369 (427)
T PRK10901 314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLL 369 (427)
T ss_pred CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 3445566666 3442 3445667789999987
No 258
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.62 E-value=1.9e-07 Score=91.07 Aligned_cols=115 Identities=15% Similarity=0.144 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHhhcCC-CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccccccccccc-
Q psy7829 356 SERSIAHILDLCYLNL-HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEI- 433 (511)
Q Consensus 356 ~~~~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~- 433 (511)
+......++.. +.+ .++.+|||||||+|.++..+++.. +..+|+++|.++++++.++++....+++++.+|..+.
T Consensus 97 ~e~~r~~~l~~--~~l~~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp 173 (340)
T PLN02490 97 TEDMRDDALEP--ADLSDRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLP 173 (340)
T ss_pred hHHHHHHHHhh--cccCCCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCC
Confidence 33444444554 333 467899999999999999999887 4479999999999999998887767788887775432
Q ss_pred -ccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 434 -IPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 434 -l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
.+..+|.++... ++......-.....+.+.|+|+|.++.+
T Consensus 174 ~~~~sFDvVIs~~-----~L~~~~d~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 174 FPTDYADRYVSAG-----SIEYWPDPQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred CCCCceeEEEEcC-----hhhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 123345443321 0100112233457788889999997654
No 259
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.62 E-value=3.3e-07 Score=87.08 Aligned_cols=143 Identities=17% Similarity=0.207 Sum_probs=90.7
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccc
Q psy7829 354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANET 430 (511)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~ 430 (511)
+.+...+..++.. +. ..+.+|||+|||+|.++..+++.. ++.+++++|+++.+++.+.++.. ..+++++.+|.
T Consensus 71 ~~~~~l~~~~l~~--~~-~~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~ 146 (251)
T TIGR03534 71 PDTEELVEAALER--LK-KGPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDW 146 (251)
T ss_pred CChHHHHHHHHHh--cc-cCCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch
Confidence 5566666666654 32 345699999999999999999886 56899999999988887776654 44678888876
Q ss_pred cccc-cccchhhhhcccCCcE---------EEE------EcCCcc------HHHHHHHHHhCCCcEEEEh--HHHHHHHH
Q psy7829 431 IEII-PHILDLCYLNLHRGAK---------VLE------IGSGSG------YLATLMAHLVGPTGHVTGL--EHMMDIAI 486 (511)
Q Consensus 431 ~~~l-~~~~d~i~~~l~~~~~---------vLD------~~~g~g------~~~~~l~~~l~~~g~v~~~--~~ml~~a~ 486 (511)
.+.. ...+|.++.+.+.... +.+ +-.|.. .+...+.+.|+|+|.++.. ....+..+
T Consensus 147 ~~~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~ 226 (251)
T TIGR03534 147 FEPLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVR 226 (251)
T ss_pred hccCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHH
Confidence 5543 3456766655432110 000 000111 2234566778999988765 22334445
Q ss_pred HHHHhcCCCceEEE
Q psy7829 487 ESIANISTNHIDLI 500 (511)
Q Consensus 487 ~~~~~~~~~~i~~i 500 (511)
+.+.+.|+..+++.
T Consensus 227 ~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 227 ALFEAAGFADVETR 240 (251)
T ss_pred HHHHhCCCCceEEE
Confidence 55666677556554
No 260
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.62 E-value=2.4e-07 Score=89.10 Aligned_cols=138 Identities=18% Similarity=0.211 Sum_probs=86.8
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---c-ccccccccc
Q psy7829 354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---T-NHIDLIANE 429 (511)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~-~~v~~i~~d 429 (511)
|.+...+...+.. .+...++.+|||+|||+|.+++.+++.. ++.+|+++|+++++++.+++|.. . ++++++++|
T Consensus 103 ~~te~lv~~~l~~-~~~~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D 180 (284)
T TIGR03533 103 SPIAELIEDGFAP-WLEPEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSD 180 (284)
T ss_pred CchHHHHHHHHHH-HhccCCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECc
Confidence 3455555554432 1223456799999999999999999887 66899999999988887777654 2 357888888
Q ss_pred ccccccc-cchhhhhcccCCc----------------EEEEEcCCcc-----HHHHHHHHHhCCCcEEEEh-HHHHHHHH
Q psy7829 430 TIEIIPH-ILDLCYLNLHRGA----------------KVLEIGSGSG-----YLATLMAHLVGPTGHVTGL-EHMMDIAI 486 (511)
Q Consensus 430 ~~~~l~~-~~d~i~~~l~~~~----------------~vLD~~~g~g-----~~~~~l~~~l~~~g~v~~~-~~ml~~a~ 486 (511)
..+.++. .+|.++.|.+... ..++ |...| .+...+.+.|+|+|.++.- ..-.+..+
T Consensus 181 ~~~~~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~-gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~~~v~ 259 (284)
T TIGR03533 181 LFAALPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALA-SGEDGLDLVRRILAEAADHLNENGVLVVEVGNSMEALE 259 (284)
T ss_pred hhhccCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhc-CCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCHHHHH
Confidence 7655543 5788877643211 1111 10111 2344556788999988754 11113455
Q ss_pred HHHHhcCC
Q psy7829 487 ESIANIST 494 (511)
Q Consensus 487 ~~~~~~~~ 494 (511)
+.+.+.+.
T Consensus 260 ~~~~~~~~ 267 (284)
T TIGR03533 260 EAYPDVPF 267 (284)
T ss_pred HHHHhCCC
Confidence 55555544
No 261
>KOG1499|consensus
Probab=98.62 E-value=1.2e-07 Score=90.17 Aligned_cols=98 Identities=21% Similarity=0.212 Sum_probs=76.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV 210 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 210 (511)
+-.+..|||+|||+|.++...|++. ..+|+++|.|.- .+.|++.+..++ ..+.|+++++.+++.-.+..+.|+
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~i-a~~a~~iv~~N~----~~~ii~vi~gkvEdi~LP~eKVDi 130 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASSI-ADFARKIVKDNG----LEDVITVIKGKVEDIELPVEKVDI 130 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhC--cceEEEEechHH-HHHHHHHHHhcC----ccceEEEeecceEEEecCccceeE
Confidence 4578999999999999999999986 568999998755 499999998886 345689999988764333578999
Q ss_pred EEecCCCCchH---------HHHHhhcccCcEEE
Q psy7829 211 IYYGGCVSEVP---------SRVLNQLKKGGRIL 235 (511)
Q Consensus 211 I~~~~~~~~~~---------~~~~~~LkpgG~l~ 235 (511)
|++..+-..++ -.--++|+|||.++
T Consensus 131 IvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 131 IVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred EeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 99875543332 22347899999885
No 262
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.62 E-value=3.4e-06 Score=74.00 Aligned_cols=117 Identities=21% Similarity=0.197 Sum_probs=87.8
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829 119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA 198 (511)
Q Consensus 119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 198 (511)
+...+.+.+...--.|.++||+.+|||.+++..+.+. ..+++.+|.+..++...++|++..+ ...+.+++..|+
T Consensus 29 VREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG--A~~~~~vE~~~~a~~~l~~N~~~l~----~~~~~~~~~~da 102 (187)
T COG0742 29 VREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG--AARVVFVEKDRKAVKILKENLKALG----LEGEARVLRNDA 102 (187)
T ss_pred HHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhC----CccceEEEeecH
Confidence 4444555554211368999999999999999988885 4589999999999999999998864 346789999998
Q ss_pred CCCC---CCCCCccEEEecCCCCc-hH----HH----HHhhcccCcEEEEEEccC
Q psy7829 199 REGY---LPEAPYDVIYYGGCVSE-VP----SR----VLNQLKKGGRILAPIGPM 241 (511)
Q Consensus 199 ~~~~---~~~~~fD~I~~~~~~~~-~~----~~----~~~~LkpgG~l~~~~~~~ 241 (511)
.... ...++||+|+.++|++. +. .- -..+|+|+|.+++.....
T Consensus 103 ~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 103 LRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred HHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 7321 12235999999999973 22 11 246799999999976543
No 263
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.62 E-value=2.6e-07 Score=81.97 Aligned_cols=105 Identities=26% Similarity=0.378 Sum_probs=69.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC----CCCC
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY----LPEA 206 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~ 206 (511)
..++.+|||+|||+|..++.++... ...+|+..|.++ .++..+.|++.++. ....++.+...|..+.. ....
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~--~~~~~v~v~~L~Wg~~~~~~~~~~~ 118 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGS--LLDGRVSVRPLDWGDELDSDLLEPH 118 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT----------EEEE--TTS-HHHHHHS-S
T ss_pred hcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccc--cccccccCcEEEecCcccccccccc
Confidence 4578899999999999999999984 456899999988 99999999998641 12457888888875422 1236
Q ss_pred CccEEEecCCCC------chHHHHHhhcccCcEEEEEEc
Q psy7829 207 PYDVIYYGGCVS------EVPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 207 ~fD~I~~~~~~~------~~~~~~~~~LkpgG~l~~~~~ 239 (511)
+||+|+....+. .+.+.+.+.|+|+|.+++...
T Consensus 119 ~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 119 SFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp SBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred cCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 899999887663 234778899999999776543
No 264
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.61 E-value=6.9e-08 Score=93.82 Aligned_cols=99 Identities=18% Similarity=0.263 Sum_probs=68.6
Q ss_pred CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----cccccccccccccc--cccchhhhhcc
Q psy7829 372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANETIEII--PHILDLCYLNL 445 (511)
Q Consensus 372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~~~l--~~~~d~i~~~l 445 (511)
.++.+|||||||+|.++..+++.. .+|+|||.++++++.++++... .++++++++..+.. +..||.++..
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~- 205 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSL- 205 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEh-
Confidence 467899999999999999998642 7999999999999988766542 35777777643321 2234444321
Q ss_pred cCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 446 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 446 ~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
.++..-.....+...+.+.|+|+|.++..
T Consensus 206 ----~vLeHv~d~~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 206 ----EVIEHVANPAEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred ----hHHHhcCCHHHHHHHHHHHcCCCcEEEEE
Confidence 12222234556777888889999988754
No 265
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.60 E-value=5.5e-08 Score=77.02 Aligned_cols=92 Identities=15% Similarity=0.260 Sum_probs=63.0
Q ss_pred EEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccccccccccc--ccccchhhhhcccCCcEEEEEc
Q psy7829 378 LEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEI--IPHILDLCYLNLHRGAKVLEIG 455 (511)
Q Consensus 378 LdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~--l~~~~d~i~~~l~~~~~vLD~~ 455 (511)
||+|||+|..+..+++. +..+|+++|+++++++.++++....++.++.++.... .+..+|.++....-.. .
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~-----~ 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHH-----L 73 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGG-----S
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceee-----c
Confidence 89999999999999987 3489999999999999999988877777776664332 2344554433211111 0
Q ss_pred CCccHHHHHHHHHhCCCcEEE
Q psy7829 456 SGSGYLATLMAHLVGPTGHVT 476 (511)
Q Consensus 456 ~g~g~~~~~l~~~l~~~g~v~ 476 (511)
........++.+.++|+|.++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEe
Confidence 233445678889999999876
No 266
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.60 E-value=2e-07 Score=88.59 Aligned_cols=109 Identities=18% Similarity=0.242 Sum_probs=69.1
Q ss_pred HHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccccccccccc--cc
Q psy7829 358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEI--IP 435 (511)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~--l~ 435 (511)
.....+++. +...++.+|||+|||+|.++..+++.. .+|+++|+++++++.++++... ..++.+|.... .+
T Consensus 29 ~~a~~l~~~--l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~~~--~~~~~~d~~~~~~~~ 101 (251)
T PRK10258 29 QSADALLAM--LPQRKFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKDAA--DHYLAGDIESLPLAT 101 (251)
T ss_pred HHHHHHHHh--cCccCCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCCC--CCEEEcCcccCcCCC
Confidence 334444454 455567899999999999999887643 7999999999999988877542 34455553321 12
Q ss_pred ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 436 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 436 ~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
..+|.++.+.. +........+...+.+.++|+|.++..
T Consensus 102 ~~fD~V~s~~~-----l~~~~d~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 102 ATFDLAWSNLA-----VQWCGNLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred CcEEEEEECch-----hhhcCCHHHHHHHHHHHcCCCeEEEEE
Confidence 34555443321 111223344556667777887777644
No 267
>KOG1975|consensus
Probab=98.60 E-value=1.6e-07 Score=87.39 Aligned_cols=116 Identities=18% Similarity=0.173 Sum_probs=82.6
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCc-CCCCCeEEEEcc
Q psy7829 119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDL-LDSGRVRIVEAD 197 (511)
Q Consensus 119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~v~~~~~d 197 (511)
+-..+++.. .+++..++|+|||-|+-.+..-++. -+.++|+||.+..++.|+++........ -..=.+.|+.+|
T Consensus 106 IKs~LI~~y---~~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~D 180 (389)
T KOG1975|consen 106 IKSVLINLY---TKRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAAD 180 (389)
T ss_pred HHHHHHHHH---hccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEec
Confidence 444444444 5788999999999999888777653 4679999999999999999876531000 000136889999
Q ss_pred CCC-----CCC-CCCCccEEEecCCCCc----------hHHHHHhhcccCcEEEEEEc
Q psy7829 198 ARE-----GYL-PEAPYDVIYYGGCVSE----------VPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 198 ~~~-----~~~-~~~~fD~I~~~~~~~~----------~~~~~~~~LkpgG~l~~~~~ 239 (511)
... ..+ .+.+||+|-|..++|. ++.++.+.|||||.++-.++
T Consensus 181 c~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 181 CFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred cchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 762 222 2234999988877753 34789999999999988665
No 268
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.60 E-value=2.2e-07 Score=93.08 Aligned_cols=106 Identities=20% Similarity=0.211 Sum_probs=68.3
Q ss_pred HHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccccccchhh
Q psy7829 362 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIPHILDLC 441 (511)
Q Consensus 362 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l~~~~d~i 441 (511)
.++.. +.++++.+|||||||+|.++..+++..+ .+|+++|+++++++.+.++....++++...|..+. +..+|.+
T Consensus 158 ~l~~~--l~l~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l-~~~fD~I 232 (383)
T PRK11705 158 LICRK--LQLKPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL-NGQFDRI 232 (383)
T ss_pred HHHHH--hCCCCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc-CCCCCEE
Confidence 34444 6788999999999999999999998764 79999999999999988877543455555543321 2334433
Q ss_pred hhcccCCcEEEE-EcC-CccHHHHHHHHHhCCCcEEEE
Q psy7829 442 YLNLHRGAKVLE-IGS-GSGYLATLMAHLVGPTGHVTG 477 (511)
Q Consensus 442 ~~~l~~~~~vLD-~~~-g~g~~~~~l~~~l~~~g~v~~ 477 (511)
+... +++ ++. ....+...+.+.|+|+|.++.
T Consensus 233 vs~~-----~~ehvg~~~~~~~l~~i~r~LkpGG~lvl 265 (383)
T PRK11705 233 VSVG-----MFEHVGPKNYRTYFEVVRRCLKPDGLFLL 265 (383)
T ss_pred EEeC-----chhhCChHHHHHHHHHHHHHcCCCcEEEE
Confidence 2210 000 000 012344556667777777654
No 269
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.59 E-value=2.7e-07 Score=82.96 Aligned_cols=105 Identities=15% Similarity=0.254 Sum_probs=63.7
Q ss_pred CCCEEEEEcCCccH----HHHHHHHHh----CCCceEEEEeCCHHHHHHHHHH------------------H-hccCCCc
Q psy7829 133 DGAKVLDLGSGSGY----QTCVFAHMV----GPTGKVIGVEHIPELIEASLRN------------------I-SKGNKDL 185 (511)
Q Consensus 133 ~~~~vLDiG~G~G~----~~~~la~~~----~~~~~v~~iD~~~~~~~~a~~~------------------~-~~~~~~~ 185 (511)
+..+|+..||++|. +++.+.+.. +...+++|+|+|+.+++.|++- + ...+..+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45689999999994 344444422 1146899999999999999841 1 1111011
Q ss_pred ----CCCCCeEEEEccCCCCCCCCCCccEEEecCCCC--------chHHHHHhhcccCcEEEEE
Q psy7829 186 ----LDSGRVRIVEADAREGYLPEAPYDVIYYGGCVS--------EVPSRVLNQLKKGGRILAP 237 (511)
Q Consensus 186 ----~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~--------~~~~~~~~~LkpgG~l~~~ 237 (511)
-...+|+|...|+.+..+..+.||+|+|-+++- .+.+.+.+.|+|||.|++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 012468999999988444558899999998873 3457889999999999973
No 270
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.58 E-value=1.8e-07 Score=89.61 Aligned_cols=73 Identities=25% Similarity=0.395 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccccccccccc
Q psy7829 356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEI 433 (511)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~ 433 (511)
.+..+..++.. +.+.++++|||||||+|.++..+++.. .+|+++|+++++++.+.+++...+++++++|..+.
T Consensus 27 ~~~i~~~i~~~--l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~ 99 (272)
T PRK00274 27 DENILDKIVDA--AGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKV 99 (272)
T ss_pred CHHHHHHHHHh--cCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhccCceEEEEChhhcC
Confidence 44667777776 677899999999999999999999886 59999999999999988877657899999887654
No 271
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.58 E-value=5e-07 Score=87.16 Aligned_cols=90 Identities=20% Similarity=0.312 Sum_probs=66.0
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cc-cccccccc
Q psy7829 354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TN-HIDLIANE 429 (511)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~-~v~~i~~d 429 (511)
|.+...+..++... ....+..+|||+|||+|.+++.+++.. ++.+|+++|+++++++.+++|.. .. +++++.+|
T Consensus 96 ~ete~lv~~~l~~~-~~~~~~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d 173 (284)
T TIGR00536 96 PETEELVEKALASL-ISQNPILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSN 173 (284)
T ss_pred CccHHHHHHHHHHh-hhcCCCCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECc
Confidence 56777777665531 122233799999999999999999887 66899999999888887776654 33 38888888
Q ss_pred ccccccc-cchhhhhcc
Q psy7829 430 TIEIIPH-ILDLCYLNL 445 (511)
Q Consensus 430 ~~~~l~~-~~d~i~~~l 445 (511)
..+.++. .+|.++.|.
T Consensus 174 ~~~~~~~~~fDlIvsNP 190 (284)
T TIGR00536 174 LFEPLAGQKIDIIVSNP 190 (284)
T ss_pred hhccCcCCCccEEEECC
Confidence 7665543 577777764
No 272
>PRK14967 putative methyltransferase; Provisional
Probab=98.56 E-value=4.8e-07 Score=84.15 Aligned_cols=124 Identities=19% Similarity=0.205 Sum_probs=78.2
Q ss_pred cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc--cccccccccccccc-ccchhhhhcc
Q psy7829 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN--HIDLIANETIEIIP-HILDLCYLNL 445 (511)
Q Consensus 369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~--~v~~i~~d~~~~l~-~~~d~i~~~l 445 (511)
..+.++++|||+|||+|.+++.+++.. . .+|+++|+++.+++.+++|.... +++++++|..+.++ ..+|.++.+.
T Consensus 32 ~~~~~~~~vLDlGcG~G~~~~~la~~~-~-~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~np 109 (223)
T PRK14967 32 EGLGPGRRVLDLCTGSGALAVAAAAAG-A-GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNP 109 (223)
T ss_pred cccCCCCeEEEecCCHHHHHHHHHHcC-C-CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECC
Confidence 567788999999999999999998753 2 59999999999888877776533 46677777554433 4577776653
Q ss_pred cCCcE----E----EE--EcCC-cc-----HHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCC
Q psy7829 446 HRGAK----V----LE--IGSG-SG-----YLATLMAHLVGPTGHVTGL---EHMMDIAIESIANIST 494 (511)
Q Consensus 446 ~~~~~----v----LD--~~~g-~g-----~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~ 494 (511)
+.... . .+ +..| .| .+...+.+.|+|+|.++.+ ..-.....+.++..++
T Consensus 110 Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~ 177 (223)
T PRK14967 110 PYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGL 177 (223)
T ss_pred CCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCC
Confidence 21100 0 00 0011 11 1233456788999999876 1123344555555554
No 273
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.56 E-value=5.4e-07 Score=87.52 Aligned_cols=122 Identities=18% Similarity=0.213 Sum_probs=80.0
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----ccccccccc
Q psy7829 354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANE 429 (511)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d 429 (511)
+.+...+...+.. .+...+..+|||+|||+|.+++.+++.. |+.+|+++|+++++++.+++|... ++++++++|
T Consensus 115 ~~te~lv~~~l~~-~~~~~~~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D 192 (307)
T PRK11805 115 SPIAELIEDGFAP-WLEDPPVTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESD 192 (307)
T ss_pred CchHHHHHHHHHH-HhccCCCCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECc
Confidence 4455555544431 1222223789999999999999999886 668999999999888887777652 347888888
Q ss_pred cccccc-ccchhhhhcccCC----------------cEEEEEcCCcc-----HHHHHHHHHhCCCcEEEEh
Q psy7829 430 TIEIIP-HILDLCYLNLHRG----------------AKVLEIGSGSG-----YLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 430 ~~~~l~-~~~d~i~~~l~~~----------------~~vLD~~~g~g-----~~~~~l~~~l~~~g~v~~~ 478 (511)
..+.++ ..+|.++.+.+.- ...++ |...| .+...+.+.|+|+|.++.-
T Consensus 193 ~~~~l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~-gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 193 LFAALPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALA-AGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred hhhhCCCCCccEEEECCCCCCccchhhcCHhhccCccceee-CCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 665554 3578877764321 11221 21112 2345566788999988754
No 274
>KOG1122|consensus
Probab=98.55 E-value=3.2e-07 Score=88.69 Aligned_cols=174 Identities=16% Similarity=0.151 Sum_probs=113.2
Q ss_pred CCCCCCcccCCCccHHHHHHHHHHcCCCCCH--HHHHH-HHhCCCCCccCC-CCCCCcccccCCCcccchhHHHHHHHHH
Q psy7829 51 PPDNLNHFKNEGTCQTDLVNHLRDIGKIRTE--RVAQA-FYKVDRGNFANE-EPYQDVSASLGYAGVMNAPNQIADAAEN 126 (511)
Q Consensus 51 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~a-~~~~~r~~~~~~-~~y~~~~~~~~~~~~~~~p~~~~~~~~~ 126 (511)
+++...+.|+.+.-+.++...|...|+..++ .+... +.-.......+. ..|-.+...++...++ . .+..
T Consensus 164 ~rp~tir~ntlk~~rrd~~~~L~nrgv~~~pl~~ws~vgl~v~~s~vpigat~e~lag~~~LQ~~sS~-----L--pv~a 236 (460)
T KOG1122|consen 164 PRPVTIRTNTLKTRRRDLAVELSNRGVNLDPLGKWSKVGLVVFDSVVPIGATPEYLAGHYMLQNASSF-----L--PVMA 236 (460)
T ss_pred CCCeeEEecccchhhhhHHHHHHhcccCcccccccccceEEEecCccccCCchhhcccceeeccCccc-----c--eeee
Confidence 4556677777777777777777777753211 11111 111111111110 1222222222211111 1 1223
Q ss_pred HhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC--C
Q psy7829 127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL--P 204 (511)
Q Consensus 127 l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~ 204 (511)
|. .++|.||||+++.+|.-+.++|..++..+.|++.|.+...+...+.|+.+. +..|..+...|..+.+. .
T Consensus 237 L~--Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rl-----Gv~ntiv~n~D~~ef~~~~~ 309 (460)
T KOG1122|consen 237 LD--PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRL-----GVTNTIVSNYDGREFPEKEF 309 (460)
T ss_pred cC--CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHh-----CCCceEEEccCccccccccc
Confidence 33 789999999999999999999999988999999999999999999999996 46777788888764321 1
Q ss_pred CCCccEEEecCCCCc----------------------------hHHHHHhhcccCcEEEEEE
Q psy7829 205 EAPYDVIYYGGCVSE----------------------------VPSRVLNQLKKGGRILAPI 238 (511)
Q Consensus 205 ~~~fD~I~~~~~~~~----------------------------~~~~~~~~LkpgG~l~~~~ 238 (511)
.++||.|+.+++|.. ++..+.+.+++||+||.+.
T Consensus 310 ~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 310 PGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred CcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 248999999998832 1245678999999999863
No 275
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.55 E-value=2.1e-07 Score=88.49 Aligned_cols=86 Identities=21% Similarity=0.278 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-ccccccccccccccc
Q psy7829 356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-TNHIDLIANETIEII 434 (511)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-~~~v~~i~~d~~~~l 434 (511)
.+..+.+++.. +.+.++++|||||||+|.+|..+++.. .+|+++|+++.+++.+.+++. ..+++++++|..+..
T Consensus 14 d~~~~~~iv~~--~~~~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~ 88 (258)
T PRK14896 14 DDRVVDRIVEY--AEDTDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVD 88 (258)
T ss_pred CHHHHHHHHHh--cCCCCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCC
Confidence 34667777776 677889999999999999999999874 799999999999998888765 467999999876643
Q ss_pred cccchhhhhccc
Q psy7829 435 PHILDLCYLNLH 446 (511)
Q Consensus 435 ~~~~d~i~~~l~ 446 (511)
...++.++.|++
T Consensus 89 ~~~~d~Vv~NlP 100 (258)
T PRK14896 89 LPEFNKVVSNLP 100 (258)
T ss_pred chhceEEEEcCC
Confidence 233455555544
No 276
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.55 E-value=4.1e-07 Score=92.73 Aligned_cols=101 Identities=18% Similarity=0.207 Sum_probs=75.0
Q ss_pred CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHH---HHhhccccccccccccccccccccchhhhhccc
Q psy7829 370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE---SIANISTNHIDLIANETIEIIPHILDLCYLNLH 446 (511)
Q Consensus 370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~---~~~~~~~~~v~~i~~d~~~~l~~~~d~i~~~l~ 446 (511)
..++|++|||++||+|.-|..+|..++..+.|+++|++...++. +.++++..|+.+.+.|....... +. -.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~-~~-----~~ 183 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAA-LP-----ET 183 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhh-ch-----hh
Confidence 67899999999999999999999999777999999999766664 55566678888877775432111 10 12
Q ss_pred CCcEEEEEcC-CccHH-------------------------HHHHHHHhCCCcEEE
Q psy7829 447 RGAKVLEIGS-GSGYL-------------------------ATLMAHLVGPTGHVT 476 (511)
Q Consensus 447 ~~~~vLD~~~-g~g~~-------------------------~~~l~~~l~~~g~v~ 476 (511)
.+..++|..| |.|.+ ....++.|+|||.++
T Consensus 184 fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LV 239 (470)
T PRK11933 184 FDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLV 239 (470)
T ss_pred cCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence 3567889988 77765 223457789999874
No 277
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=1.3e-07 Score=90.30 Aligned_cols=92 Identities=23% Similarity=0.273 Sum_probs=68.1
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccc---ccccc
Q psy7829 351 DNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH---IDLIA 427 (511)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~---v~~i~ 427 (511)
.+.|.|...+..++.. ...... +|||+|||||.+++.+|+.. |+..|+|+|++++.++.|++|...++ +.++.
T Consensus 91 iPr~dTe~Lve~~l~~--~~~~~~-~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~ 166 (280)
T COG2890 91 IPRPDTELLVEAALAL--LLQLDK-RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGLVRVLVVQ 166 (280)
T ss_pred ecCCchHHHHHHHHHh--hhhcCC-cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEe
Confidence 3446677777665532 222222 89999999999999999988 66899999999988887777766544 45666
Q ss_pred ccccccccccchhhhhccc
Q psy7829 428 NETIEIIPHILDLCYLNLH 446 (511)
Q Consensus 428 ~d~~~~l~~~~d~i~~~l~ 446 (511)
+|..+.+...+|.++.|.+
T Consensus 167 ~dlf~~~~~~fDlIVsNPP 185 (280)
T COG2890 167 SDLFEPLRGKFDLIVSNPP 185 (280)
T ss_pred eecccccCCceeEEEeCCC
Confidence 6767777777888887764
No 278
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.54 E-value=5.3e-07 Score=87.09 Aligned_cols=105 Identities=30% Similarity=0.242 Sum_probs=87.9
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV 210 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 210 (511)
..+|.+|+|.-||-|++++.+|+...+ .|+++|++|.+++..++|+..|+ ....+..+++|..+.....+.+|.
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~----v~~~v~~i~gD~rev~~~~~~aDr 259 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNK----VEGRVEPILGDAREVAPELGVADR 259 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcC----ccceeeEEeccHHHhhhccccCCE
Confidence 457999999999999999999998633 49999999999999999999986 344599999999875544478999
Q ss_pred EEecCCC--CchHHHHHhhcccCcEEEEEEccC
Q psy7829 211 IYYGGCV--SEVPSRVLNQLKKGGRILAPIGPM 241 (511)
Q Consensus 211 I~~~~~~--~~~~~~~~~~LkpgG~l~~~~~~~ 241 (511)
|+.+.+. +.+...+.+.+++||.+.+....+
T Consensus 260 Iim~~p~~a~~fl~~A~~~~k~~g~iHyy~~~~ 292 (341)
T COG2520 260 IIMGLPKSAHEFLPLALELLKDGGIIHYYEFVP 292 (341)
T ss_pred EEeCCCCcchhhHHHHHHHhhcCcEEEEEeccc
Confidence 9999876 567788999999999998864433
No 279
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.53 E-value=1.3e-06 Score=78.08 Aligned_cols=115 Identities=27% Similarity=0.344 Sum_probs=82.4
Q ss_pred HHHHHHHHHHh-hcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829 118 NQIADAAENLK-LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA 196 (511)
Q Consensus 118 ~~~~~~~~~l~-~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~ 196 (511)
.+.+.++..+. ..+++|.+||-+|+++|....+++...++++.|+++|.|+...+..-.-+++ -+||-.+..
T Consensus 57 KLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-------R~NIiPIl~ 129 (229)
T PF01269_consen 57 KLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-------RPNIIPILE 129 (229)
T ss_dssp HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-------STTEEEEES
T ss_pred HHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-------CCceeeeec
Confidence 45555555554 3578999999999999999999999999899999999999665555444443 358999999
Q ss_pred cCCCCCC---CCCCccEEEecCCCCc----hHHHHHhhcccCcEEEEEEc
Q psy7829 197 DAREGYL---PEAPYDVIYYGGCVSE----VPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 197 d~~~~~~---~~~~fD~I~~~~~~~~----~~~~~~~~LkpgG~l~~~~~ 239 (511)
|+..+.. --+..|+|+++-+-+. +..++...||+||.+++.+-
T Consensus 130 DAr~P~~Y~~lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 130 DARHPEKYRMLVEMVDVIFQDVAQPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp -TTSGGGGTTTS--EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCChHHhhcccccccEEEecCCChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 9985321 1257999999977654 23678889999999999763
No 280
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.53 E-value=7e-07 Score=81.90 Aligned_cols=99 Identities=16% Similarity=0.102 Sum_probs=64.2
Q ss_pred CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc---------------cccccccccccccc
Q psy7829 370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST---------------NHIDLIANETIEII 434 (511)
Q Consensus 370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~---------------~~v~~i~~d~~~~l 434 (511)
...++.+|||+|||.|..+++||... -.|+|+|+++..++.+.+..+. .+++++++|..+.-
T Consensus 31 ~~~~~~rvLd~GCG~G~da~~LA~~G---~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~ 107 (213)
T TIGR03840 31 GLPAGARVFVPLCGKSLDLAWLAEQG---HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALT 107 (213)
T ss_pred CCCCCCeEEEeCCCchhHHHHHHhCC---CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCC
Confidence 44678899999999999999999764 7999999999888875443221 23555555544322
Q ss_pred cccchhhhhcccCCcEEEEEcCCc-------cHHHHHHHHHhCCCcEEEEh
Q psy7829 435 PHILDLCYLNLHRGAKVLEIGSGS-------GYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 435 ~~~~d~i~~~l~~~~~vLD~~~g~-------g~~~~~l~~~l~~~g~v~~~ 478 (511)
... ...-..++|.+|-. ......+.+.|+|+|.++.+
T Consensus 108 ~~~-------~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 108 AAD-------LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred ccc-------CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 100 01124456655421 22355777889999975444
No 281
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.53 E-value=5.2e-07 Score=82.10 Aligned_cols=104 Identities=14% Similarity=0.071 Sum_probs=65.0
Q ss_pred cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cccccccccccccc-ccccchhhhhc
Q psy7829 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEI-IPHILDLCYLN 444 (511)
Q Consensus 369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~-l~~~~d~i~~~ 444 (511)
+...++.+|||+|||+|..+..+|+.. .+|+++|+++++++.++++.. ..+++++..|.... .+..+|.++..
T Consensus 26 l~~~~~~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~ 102 (197)
T PRK11207 26 VKVVKPGKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYDFILST 102 (197)
T ss_pred cccCCCCcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcCEEEEe
Confidence 445577899999999999999999763 799999999988887766554 34455555553221 12234444332
Q ss_pred ccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 445 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 445 l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
..- ..++- .....+...+++.|+|+|.++.+
T Consensus 103 ~~~--~~~~~-~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 103 VVL--MFLEA-KTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred cch--hhCCH-HHHHHHHHHHHHHcCCCcEEEEE
Confidence 110 00000 01124456778889999986543
No 282
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.52 E-value=2.2e-07 Score=89.30 Aligned_cols=84 Identities=20% Similarity=0.352 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----cccccccccccc
Q psy7829 356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANETI 431 (511)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d~~ 431 (511)
.+..+.+++.. +.+.++++|||||||+|.+|..+++.. .+|+++|+++.++..+++++. ..+++++++|..
T Consensus 21 d~~i~~~Iv~~--~~~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal 95 (294)
T PTZ00338 21 NPLVLDKIVEK--AAIKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDAL 95 (294)
T ss_pred CHHHHHHHHHh--cCCCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHh
Confidence 45677777776 678899999999999999999998875 689999999999998887764 457899999876
Q ss_pred ccccccchhhhhc
Q psy7829 432 EIIPHILDLCYLN 444 (511)
Q Consensus 432 ~~l~~~~d~i~~~ 444 (511)
+.....++.++.|
T Consensus 96 ~~~~~~~d~VvaN 108 (294)
T PTZ00338 96 KTEFPYFDVCVAN 108 (294)
T ss_pred hhcccccCEEEec
Confidence 6432233443333
No 283
>PLN03075 nicotianamine synthase; Provisional
Probab=98.52 E-value=2.4e-07 Score=87.92 Aligned_cols=102 Identities=12% Similarity=0.113 Sum_probs=71.1
Q ss_pred CCCCCCEEEEEeccccH-HHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-----cccccccccccccccc--ccchhh
Q psy7829 370 NLHRGAKVLEIGSGSGY-LATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-----TNHIDLIANETIEIIP--HILDLC 441 (511)
Q Consensus 370 ~~~~~~~vLdiG~G~G~-~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-----~~~v~~i~~d~~~~l~--~~~d~i 441 (511)
...++++|+|||||.|. .++.+++...|+++++++|++++++..|++.+. .++++|..+|..+..+ ..+|.+
T Consensus 120 ~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlV 199 (296)
T PLN03075 120 VNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVV 199 (296)
T ss_pred hcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEE
Confidence 33478999999999775 456666555588999999999999998888774 2558899888766432 346665
Q ss_pred hhcccCCcEEEEEc-CCccHHHHHHHHHhCCCcEEE
Q psy7829 442 YLNLHRGAKVLEIG-SGSGYLATLMAHLVGPTGHVT 476 (511)
Q Consensus 442 ~~~l~~~~~vLD~~-~g~g~~~~~l~~~l~~~g~v~ 476 (511)
+... ++++- ...-.+...+++.++|||.++
T Consensus 200 F~~A-----Li~~dk~~k~~vL~~l~~~LkPGG~Lv 230 (296)
T PLN03075 200 FLAA-----LVGMDKEEKVKVIEHLGKHMAPGALLM 230 (296)
T ss_pred EEec-----ccccccccHHHHHHHHHHhcCCCcEEE
Confidence 5431 22221 234455677888888988765
No 284
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.51 E-value=9.9e-07 Score=83.98 Aligned_cols=104 Identities=18% Similarity=0.265 Sum_probs=72.5
Q ss_pred CCEEEEEcCCccH----HHHHHHHHhC---CCceEEEEeCCHHHHHHHHHHH------------------hcc-C--CC-
Q psy7829 134 GAKVLDLGSGSGY----QTCVFAHMVG---PTGKVIGVEHIPELIEASLRNI------------------SKG-N--KD- 184 (511)
Q Consensus 134 ~~~vLDiG~G~G~----~~~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~------------------~~~-~--~~- 184 (511)
..+|+..||+||- +++.+.+..+ .+.+|+|+|+|+.+++.|++-. .+. + .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4799999999994 4444444332 1467999999999999998641 110 0 00
Q ss_pred c----CCCCCeEEEEccCCCC-CCCCCCccEEEecCCCCc--------hHHHHHhhcccCcEEEEE
Q psy7829 185 L----LDSGRVRIVEADAREG-YLPEAPYDVIYYGGCVSE--------VPSRVLNQLKKGGRILAP 237 (511)
Q Consensus 185 ~----~~~~~v~~~~~d~~~~-~~~~~~fD~I~~~~~~~~--------~~~~~~~~LkpgG~l~~~ 237 (511)
+ -....|+|.+.|+.+. ++..+.||+|+|.+++.+ +.+++.+.|+|||.|++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 0 0124689999999863 333578999999877643 347899999999998763
No 285
>PRK04148 hypothetical protein; Provisional
Probab=98.51 E-value=2.8e-06 Score=70.57 Aligned_cols=90 Identities=16% Similarity=0.105 Sum_probs=66.9
Q ss_pred CCCCEEEEEcCCccH-HHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCC-CCCcc
Q psy7829 132 VDGAKVLDLGSGSGY-QTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLP-EAPYD 209 (511)
Q Consensus 132 ~~~~~vLDiG~G~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD 209 (511)
.++.+|||||||+|. ++..|++.. ..|+++|+++.+++.++++ .++++.+|+++.... -..+|
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~G---~~ViaIDi~~~aV~~a~~~------------~~~~v~dDlf~p~~~~y~~a~ 79 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKESG---FDVIVIDINEKAVEKAKKL------------GLNAFVDDLFNPNLEIYKNAK 79 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHCC---CEEEEEECCHHHHHHHHHh------------CCeEEECcCCCCCHHHHhcCC
Confidence 356899999999996 787887653 4799999999998888765 368999999864432 36699
Q ss_pred EEEecCCCCchHHHHHhhccc-CcEEEE
Q psy7829 210 VIYYGGCVSEVPSRVLNQLKK-GGRILA 236 (511)
Q Consensus 210 ~I~~~~~~~~~~~~~~~~Lkp-gG~l~~ 236 (511)
+|++.-+.+.+...+.++-+. |.-+++
T Consensus 80 liysirpp~el~~~~~~la~~~~~~~~i 107 (134)
T PRK04148 80 LIYSIRPPRDLQPFILELAKKINVPLII 107 (134)
T ss_pred EEEEeCCCHHHHHHHHHHHHHcCCCEEE
Confidence 999998887776555544433 444544
No 286
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.51 E-value=3.1e-07 Score=83.45 Aligned_cols=103 Identities=12% Similarity=0.080 Sum_probs=62.5
Q ss_pred cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccc--cccccccc-cccccchhhhhcc
Q psy7829 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHID--LIANETIE-IIPHILDLCYLNL 445 (511)
Q Consensus 369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~--~i~~d~~~-~l~~~~d~i~~~l 445 (511)
+...++.+|||+|||+|..+..+|+.. .+|+++|+++.+++.++++....++. +...|... .++..+|.++...
T Consensus 26 ~~~~~~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~ 102 (195)
T TIGR00477 26 VKTVAPCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDFIFSTV 102 (195)
T ss_pred hccCCCCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCEEEEec
Confidence 444567899999999999999999753 79999999999988876665544433 22222211 0122344333221
Q ss_pred cCCcEEEEEcC-CccHHHHHHHHHhCCCcEEEEh
Q psy7829 446 HRGAKVLEIGS-GSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 446 ~~~~~vLD~~~-g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
.- -.+.. ..-.+...+++.|+|+|.++.+
T Consensus 103 ~~----~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 103 VF----MFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred cc----ccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 00 00000 0123456778889999985544
No 287
>KOG0820|consensus
Probab=98.51 E-value=9.6e-07 Score=80.51 Aligned_cols=115 Identities=19% Similarity=0.222 Sum_probs=87.7
Q ss_pred cccCCCcccc-hhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCC
Q psy7829 106 ASLGYAGVMN-APNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKD 184 (511)
Q Consensus 106 ~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~ 184 (511)
+....|+++. .|.+.+.+++... +++++.|||+|.|||.++..+.+.. .+|+++|+++.|+...+++.....
T Consensus 32 fnkd~GQHilkNp~v~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp-- 104 (315)
T KOG0820|consen 32 FNKDFGQHILKNPLVIDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTP-- 104 (315)
T ss_pred cccccchhhhcCHHHHHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCC--
Confidence 3444566654 6778888888776 8999999999999999999999985 369999999999999999887642
Q ss_pred cCCCCCeEEEEccCCCCCCCCCCccEEEecCCCCchHHHHHhhcccC
Q psy7829 185 LLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKG 231 (511)
Q Consensus 185 ~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~~~~~~~Lkpg 231 (511)
.....+++.+|...... ..||.++++.+++--..-+.+.|.-+
T Consensus 105 --~~~kLqV~~gD~lK~d~--P~fd~cVsNlPyqISSp~vfKLL~~~ 147 (315)
T KOG0820|consen 105 --KSGKLQVLHGDFLKTDL--PRFDGCVSNLPYQISSPLVFKLLLHR 147 (315)
T ss_pred --ccceeeEEecccccCCC--cccceeeccCCccccCHHHHHhcCCC
Confidence 34579999999876432 46999999887754334444555444
No 288
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.50 E-value=5.7e-07 Score=92.34 Aligned_cols=127 Identities=14% Similarity=0.158 Sum_probs=79.1
Q ss_pred HHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccccccccc
Q psy7829 360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEIIPH 436 (511)
Q Consensus 360 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~l~~ 436 (511)
...+... +.+.++.+|||+|||+|.+++.+|+.. .+|+++|+++++++.+++|+. ..|++++.+|..+.++.
T Consensus 281 ~~~~~~~--l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~ 355 (431)
T TIGR00479 281 VDRALEA--LELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPK 355 (431)
T ss_pred HHHHHHH--hccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHH
Confidence 3344444 566778999999999999999999876 689999999999888777754 56788998887654332
Q ss_pred cchhhhhcccCCcEEEEEcC-CccHHHHHHHHHhCCCcEEEEh--HHHHHHHHHHHHhcCC
Q psy7829 437 ILDLCYLNLHRGAKVLEIGS-GSGYLATLMAHLVGPTGHVTGL--EHMMDIAIESIANIST 494 (511)
Q Consensus 437 ~~d~i~~~l~~~~~vLD~~~-g~g~~~~~l~~~l~~~g~v~~~--~~ml~~a~~~~~~~~~ 494 (511)
. .......+-.++|... |...-.......++|++-++.. +..+..--+.+.+.|.
T Consensus 356 ~---~~~~~~~D~vi~dPPr~G~~~~~l~~l~~l~~~~ivyvsc~p~tlard~~~l~~~gy 413 (431)
T TIGR00479 356 Q---PWAGQIPDVLLLDPPRKGCAAEVLRTIIELKPERIVYVSCNPATLARDLEFLCKEGY 413 (431)
T ss_pred H---HhcCCCCCEEEECcCCCCCCHHHHHHHHhcCCCEEEEEcCCHHHHHHHHHHHHHCCe
Confidence 1 0001112334445443 3222222333356776554444 5555555555555554
No 289
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.50 E-value=3e-07 Score=91.16 Aligned_cols=113 Identities=25% Similarity=0.295 Sum_probs=71.4
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829 119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA 198 (511)
Q Consensus 119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 198 (511)
+...+++.+. ..++ +|||+.||.|.+++.+|... .+|+|+|+++.+++.|++|+..++ .+|++|+.+++
T Consensus 185 l~~~~~~~l~--~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~-----i~n~~f~~~~~ 253 (352)
T PF05958_consen 185 LYEQALEWLD--LSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNG-----IDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHHHCT--T-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT-------SEEEEE--S
T ss_pred HHHHHHHHhh--cCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcC-----CCcceEEEeec
Confidence 3444444443 3334 89999999999999999876 369999999999999999999974 67999998876
Q ss_pred CCCCC----------------CCCCccEEEecCCCCchHHHHHhhc-ccCcEEEEEEccCC
Q psy7829 199 REGYL----------------PEAPYDVIYYGGCVSEVPSRVLNQL-KKGGRILAPIGPMD 242 (511)
Q Consensus 199 ~~~~~----------------~~~~fD~I~~~~~~~~~~~~~~~~L-kpgG~l~~~~~~~~ 242 (511)
.+... ....+|+|+.++|-..+...+.+.+ ++.-.+++++.+.+
T Consensus 254 ~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~~~~ivYvSCnP~t 314 (352)
T PF05958_consen 254 EDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIKKLKRIVYVSCNPAT 314 (352)
T ss_dssp HHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHHHSSEEEEEES-HHH
T ss_pred cchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHhcCCeEEEEECCHHH
Confidence 42110 1125899999998765544333322 44557777777644
No 290
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.49 E-value=5.8e-07 Score=82.36 Aligned_cols=90 Identities=21% Similarity=0.314 Sum_probs=67.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEE
Q psy7829 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIY 212 (511)
Q Consensus 133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~ 212 (511)
...++||||+|.|..+..++..+.. |++.|.|+.|....+++ .++++..|-.. ..+.+||+|.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~---v~aTE~S~~Mr~rL~~k------------g~~vl~~~~w~--~~~~~fDvIs 156 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE---VYATEASPPMRWRLSKK------------GFTVLDIDDWQ--QTDFKFDVIS 156 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce---EEeecCCHHHHHHHHhC------------CCeEEehhhhh--ccCCceEEEe
Confidence 3568999999999999999998844 99999999996655442 23444333211 1236799999
Q ss_pred ecCCCC------chHHHHHhhcccCcEEEEEEc
Q psy7829 213 YGGCVS------EVPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 213 ~~~~~~------~~~~~~~~~LkpgG~l~~~~~ 239 (511)
|-+.+. .+++.+++.|+|+|++++.+-
T Consensus 157 cLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 157 CLNVLDRCDRPLTLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred ehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEE
Confidence 988774 345899999999999999754
No 291
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.49 E-value=1.5e-07 Score=78.00 Aligned_cols=103 Identities=19% Similarity=0.258 Sum_probs=69.6
Q ss_pred CCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----cccccccccccccc----cccchhhhhcc
Q psy7829 374 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANETIEII----PHILDLCYLNL 445 (511)
Q Consensus 374 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~~~l----~~~~d~i~~~l 445 (511)
|.+|||+|||+|.+++.+++.. ..+++++|+++..++.++.++.. .+++++.+|..+.. ...+|.++.+.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~np 78 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNP 78 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECC
Confidence 5789999999999999999876 48999999999888888877763 35788888865543 34566666665
Q ss_pred cCCcEE---EEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 446 HRGAKV---LEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 446 ~~~~~v---LD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
+..... -...--...+...+.+.++|+|.++.+
T Consensus 79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 79 PYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 543221 000111223455667788888887654
No 292
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.49 E-value=7.1e-07 Score=80.68 Aligned_cols=54 Identities=20% Similarity=0.356 Sum_probs=43.0
Q ss_pred cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccc
Q psy7829 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANET 430 (511)
Q Consensus 369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~ 430 (511)
..+.++++|||+|||+|.++..+++...+.++|+++|+++.+ ..+++++++.|.
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~~~~i~~~~~d~ 81 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------PIENVDFIRGDF 81 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------cCCCceEEEeeC
Confidence 456789999999999999999999887556799999999864 234566666554
No 293
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.49 E-value=3.2e-07 Score=81.36 Aligned_cols=79 Identities=24% Similarity=0.281 Sum_probs=60.6
Q ss_pred HHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-ccccccccccccccccc--cc
Q psy7829 362 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-TNHIDLIANETIEIIPH--IL 438 (511)
Q Consensus 362 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-~~~v~~i~~d~~~~l~~--~~ 438 (511)
+++.. +.+.++++|||+|||+|.++..+++.. .+|+++|+++.+++.+++++. ..+++++++|..+.... .+
T Consensus 4 ~i~~~--~~~~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 4 KIVRA--ANLRPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHh--cCCCCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCC
Confidence 44554 677889999999999999999999873 799999999999998888775 45788888887665321 24
Q ss_pred hhhhhcc
Q psy7829 439 DLCYLNL 445 (511)
Q Consensus 439 d~i~~~l 445 (511)
+.++.++
T Consensus 79 d~vi~n~ 85 (169)
T smart00650 79 YKVVGNL 85 (169)
T ss_pred CEEEECC
Confidence 4444443
No 294
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.47 E-value=5.2e-07 Score=79.10 Aligned_cols=76 Identities=17% Similarity=0.186 Sum_probs=59.5
Q ss_pred EEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCCch------HHHHHhhcccCcEEE
Q psy7829 162 IGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRIL 235 (511)
Q Consensus 162 ~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~ 235 (511)
+|+|+|++|++.|+++....+. ....+++++++|+.+.+.++++||+|++...++++ ++++.++|||||.++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~--~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR--SCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc--cCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEE
Confidence 4899999999999877653210 02347999999998766566789999998887764 479999999999998
Q ss_pred EEEc
Q psy7829 236 APIG 239 (511)
Q Consensus 236 ~~~~ 239 (511)
+...
T Consensus 79 i~d~ 82 (160)
T PLN02232 79 ILDF 82 (160)
T ss_pred EEEC
Confidence 8533
No 295
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=1.5e-06 Score=80.60 Aligned_cols=105 Identities=17% Similarity=0.165 Sum_probs=81.6
Q ss_pred chhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEE
Q psy7829 115 NAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIV 194 (511)
Q Consensus 115 ~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~ 194 (511)
..+.+...+++.+. +.+++.|||||+|.|.+|..|++... +|+++|+++.+++..++.... .+|++++
T Consensus 14 ~d~~v~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~-------~~n~~vi 81 (259)
T COG0030 14 IDKNVIDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAA---RVTAIEIDRRLAEVLKERFAP-------YDNLTVI 81 (259)
T ss_pred cCHHHHHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcC---eEEEEEeCHHHHHHHHHhccc-------ccceEEE
Confidence 34556777888776 77789999999999999999999863 499999999999999988653 4589999
Q ss_pred EccCCCCCCCCC-CccEEEecCCCCchHHHHHhhcccC
Q psy7829 195 EADAREGYLPEA-PYDVIYYGGCVSEVPSRVLNQLKKG 231 (511)
Q Consensus 195 ~~d~~~~~~~~~-~fD~I~~~~~~~~~~~~~~~~Lkpg 231 (511)
.+|+.....+.- .++.|++|.++.--..-+.++|+..
T Consensus 82 ~~DaLk~d~~~l~~~~~vVaNlPY~Isspii~kll~~~ 119 (259)
T COG0030 82 NGDALKFDFPSLAQPYKVVANLPYNISSPILFKLLEEK 119 (259)
T ss_pred eCchhcCcchhhcCCCEEEEcCCCcccHHHHHHHHhcc
Confidence 999986444311 6899999988864444445555443
No 296
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.46 E-value=6.3e-07 Score=87.72 Aligned_cols=102 Identities=17% Similarity=0.155 Sum_probs=65.3
Q ss_pred cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHH--hh-cc-ccccccccccccccc-cccchhhhh
Q psy7829 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESI--AN-IS-TNHIDLIANETIEII-PHILDLCYL 443 (511)
Q Consensus 369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~--~~-~~-~~~v~~i~~d~~~~l-~~~~d~i~~ 443 (511)
+....|.+|||||||+|+++..++... + ..|+|+|.+..++.++. ++ .+ ..+++++..+....- +..||.+++
T Consensus 118 l~~l~g~~VLDIGCG~G~~~~~la~~g-~-~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s 195 (322)
T PRK15068 118 LSPLKGRTVLDVGCGNGYHMWRMLGAG-A-KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFS 195 (322)
T ss_pred hCCCCCCEEEEeccCCcHHHHHHHHcC-C-CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEE
Confidence 444568999999999999999998875 3 57999999987776432 22 22 346777766533221 334554443
Q ss_pred cccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEE
Q psy7829 444 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG 477 (511)
Q Consensus 444 ~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~ 477 (511)
.. ++..-..+-.+...+++.|+|||.++.
T Consensus 196 ~~-----vl~H~~dp~~~L~~l~~~LkpGG~lvl 224 (322)
T PRK15068 196 MG-----VLYHRRSPLDHLKQLKDQLVPGGELVL 224 (322)
T ss_pred CC-----hhhccCCHHHHHHHHHHhcCCCcEEEE
Confidence 11 111112344556778888899998764
No 297
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.46 E-value=1.6e-07 Score=81.04 Aligned_cols=75 Identities=24% Similarity=0.266 Sum_probs=55.3
Q ss_pred EEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC---CCCCccEEE
Q psy7829 136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL---PEAPYDVIY 212 (511)
Q Consensus 136 ~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~I~ 212 (511)
.|+|+.||.|..++.+|+.+ . +|+++|+++..++.|+.|++-.| ..++|+++++|+.+... ....||+|+
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~-~--~Viaidid~~~~~~a~hNa~vYG----v~~~I~~i~gD~~~~~~~~~~~~~~D~vF 74 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF-D--RVIAIDIDPERLECAKHNAEVYG----VADNIDFICGDFFELLKRLKSNKIFDVVF 74 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-----GGGEEEEES-HHHHGGGB------SEEE
T ss_pred EEEEeccCcCHHHHHHHHhC-C--eEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEeCCHHHHHhhccccccccEEE
Confidence 69999999999999999986 3 59999999999999999999876 36789999999875322 112289999
Q ss_pred ecCCC
Q psy7829 213 YGGCV 217 (511)
Q Consensus 213 ~~~~~ 217 (511)
+++|.
T Consensus 75 lSPPW 79 (163)
T PF09445_consen 75 LSPPW 79 (163)
T ss_dssp E---B
T ss_pred ECCCC
Confidence 99876
No 298
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.45 E-value=4.6e-07 Score=88.76 Aligned_cols=59 Identities=12% Similarity=0.102 Sum_probs=48.8
Q ss_pred CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cccccccccccccc
Q psy7829 372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEI 433 (511)
Q Consensus 372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~ 433 (511)
.++.+|||+|||+|.+++.+|+.. .+|+|+|+++++++.+++|.. ..+++++++|..+.
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~ 233 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQF 233 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHH
Confidence 357899999999999999999854 799999999988888777654 45688888886554
No 299
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.44 E-value=9.9e-07 Score=84.67 Aligned_cols=93 Identities=18% Similarity=0.241 Sum_probs=66.7
Q ss_pred CCCCEEEEEeccccHHHHHHHHHhCCC--cEEEEEcCCHHHHHHHHhhcccccccccccccccc--ccccchhhhhcccC
Q psy7829 372 HRGAKVLEIGSGSGYLATLMAHLVGPT--GHVTGLEHMMDIAIESIANISTNHIDLIANETIEI--IPHILDLCYLNLHR 447 (511)
Q Consensus 372 ~~~~~vLdiG~G~G~~~~~la~~~~~~--~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~--l~~~~d~i~~~l~~ 447 (511)
....+|||+|||+|+++..+++..+.. ..|+|+|+++++++.+.++. +++.+..+|.... .+..+|.++....
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~--~~~~~~~~d~~~lp~~~~sfD~I~~~~~- 160 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY--PQVTFCVASSHRLPFADQSLDAIIRIYA- 160 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC--CCCeEEEeecccCCCcCCceeEEEEecC-
Confidence 456789999999999999999876321 37999999999999987764 4567766664432 2334555543221
Q ss_pred CcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 448 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 448 ~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
......+.+.|+|+|.++.+
T Consensus 161 -----------~~~~~e~~rvLkpgG~li~~ 180 (272)
T PRK11088 161 -----------PCKAEELARVVKPGGIVITV 180 (272)
T ss_pred -----------CCCHHHHHhhccCCCEEEEE
Confidence 12346788899999999877
No 300
>KOG1500|consensus
Probab=98.43 E-value=1e-06 Score=82.29 Aligned_cols=133 Identities=22% Similarity=0.319 Sum_probs=91.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEE
Q psy7829 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIY 212 (511)
Q Consensus 133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~ 212 (511)
.+..|||+|||+|.++...+... ..+|+++|.| +|.+.|++.++.+. ..++|.++.|.+++.-.+ ++.|+|+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS-~MAqyA~~Lv~~N~----~~~rItVI~GKiEdieLP-Ek~DviI 248 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEAS-EMAQYARKLVASNN----LADRITVIPGKIEDIELP-EKVDVII 248 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC--cceEEEEehh-HHHHHHHHHHhcCC----ccceEEEccCccccccCc-hhccEEE
Confidence 57789999999999999988885 4689999985 78899999988874 678999999998764333 6799999
Q ss_pred ecCCCC-----chH---HHHHhhcccCcEEEEEEccCC----CcceE--EEEEEecCCeEEEEeecceEEEeccccc
Q psy7829 213 YGGCVS-----EVP---SRVLNQLKKGGRILAPIGPMD----DFQKL--TQIDRFHDNTLQKTDLFEVAYDAIMRKA 275 (511)
Q Consensus 213 ~~~~~~-----~~~---~~~~~~LkpgG~l~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (511)
+.++-. .++ -..+++|||.|.++-.++.-. .++.+ +.+.+ ...|+...+.++...||....
T Consensus 249 SEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nk--AnFWyQq~fyGVdLt~L~g~a 323 (517)
T KOG1500|consen 249 SEPMGYMLVNERMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNK--ANFWYQQNFYGVDLTPLYGSA 323 (517)
T ss_pred eccchhhhhhHHHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhh--hhhhhhhccccccchhhhhhh
Confidence 876532 222 235699999999975444211 11110 11111 234566666677777776544
No 301
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.42 E-value=1.7e-06 Score=81.40 Aligned_cols=111 Identities=21% Similarity=0.319 Sum_probs=73.1
Q ss_pred HHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----cccccccccccccc--
Q psy7829 361 AHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANETIEII-- 434 (511)
Q Consensus 361 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~~~l-- 434 (511)
..++.. +...++.+|||+|||+|..+..++..++++.+++++|+++++++.+.+++.. .++.++..|..+..
T Consensus 41 ~~~~~~--~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 118 (239)
T PRK00216 41 RKTIKW--LGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP 118 (239)
T ss_pred HHHHHH--hCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC
Confidence 344554 5566789999999999999999998874368999999999999888877653 44666666644321
Q ss_pred cccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 435 PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 435 ~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
+..+|.++.. .++......-.+...+.+.++|+|.++.+
T Consensus 119 ~~~~D~I~~~-----~~l~~~~~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 119 DNSFDAVTIA-----FGLRNVPDIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred CCCccEEEEe-----cccccCCCHHHHHHHHHHhccCCcEEEEE
Confidence 1233433221 01111122334456677788999987654
No 302
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.42 E-value=1.1e-06 Score=86.27 Aligned_cols=118 Identities=22% Similarity=0.223 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHh------CCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCC
Q psy7829 117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMV------GPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGR 190 (511)
Q Consensus 117 p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~------~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~ 190 (511)
..+...+.+++. ..++.+|+|-+||+|.+...+.+.+ ....+++|+|+++.++..|+-++.-.+. ...+
T Consensus 32 ~~i~~l~~~~~~--~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~---~~~~ 106 (311)
T PF02384_consen 32 REIVDLMVKLLN--PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI---DNSN 106 (311)
T ss_dssp HHHHHHHHHHHT--T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH---HCBG
T ss_pred HHHHHHHHhhhh--ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc---cccc
Confidence 345666677774 6678899999999999988887743 2467899999999999999988765431 2334
Q ss_pred eEEEEccCCCCCCC--CCCccEEEecCCCCc---------------------------hHHHHHhhcccCcEEEEEEc
Q psy7829 191 VRIVEADAREGYLP--EAPYDVIYYGGCVSE---------------------------VPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 191 v~~~~~d~~~~~~~--~~~fD~I~~~~~~~~---------------------------~~~~~~~~LkpgG~l~~~~~ 239 (511)
..+..+|....... ...||+|++++|+.. +...+.+.|++||++.+.+.
T Consensus 107 ~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 107 INIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp CEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 56888887643322 368999999988721 12567899999999877554
No 303
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.42 E-value=2.7e-06 Score=75.69 Aligned_cols=112 Identities=27% Similarity=0.326 Sum_probs=84.9
Q ss_pred HHHHHHh--hcCCCCC-EEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829 122 DAAENLK--LHLVDGA-KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA 198 (511)
Q Consensus 122 ~~~~~l~--~~~~~~~-~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 198 (511)
++++.+. ..+.... +++|||+|.|.-++.+|-.. |+.+++.+|....-+...+.-.... +.+|++++++.+
T Consensus 34 Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L-----~L~nv~v~~~R~ 107 (184)
T PF02527_consen 34 HILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVREL-----GLSNVEVINGRA 107 (184)
T ss_dssp HHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHH-----T-SSEEEEES-H
T ss_pred HHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHh-----CCCCEEEEEeee
Confidence 4455443 1233333 89999999999999999987 8899999999999999888888875 467999999998
Q ss_pred CCCCCCCCCccEEEecCCCC--chHHHHHhhcccCcEEEEEEcc
Q psy7829 199 REGYLPEAPYDVIYYGGCVS--EVPSRVLNQLKKGGRILAPIGP 240 (511)
Q Consensus 199 ~~~~~~~~~fD~I~~~~~~~--~~~~~~~~~LkpgG~l~~~~~~ 240 (511)
++ ......||+|++-+..+ .+..-+...|++||.+++.-+.
T Consensus 108 E~-~~~~~~fd~v~aRAv~~l~~l~~~~~~~l~~~G~~l~~KG~ 150 (184)
T PF02527_consen 108 EE-PEYRESFDVVTARAVAPLDKLLELARPLLKPGGRLLAYKGP 150 (184)
T ss_dssp HH-TTTTT-EEEEEEESSSSHHHHHHHHGGGEEEEEEEEEEESS
T ss_pred cc-cccCCCccEEEeehhcCHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 87 33447899999987654 3456778899999999987654
No 304
>PRK14968 putative methyltransferase; Provisional
Probab=98.41 E-value=1.5e-06 Score=78.51 Aligned_cols=123 Identities=20% Similarity=0.262 Sum_probs=76.3
Q ss_pred cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc---cc--cccccccccccccc-cchhhh
Q psy7829 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST---NH--IDLIANETIEIIPH-ILDLCY 442 (511)
Q Consensus 369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~---~~--v~~i~~d~~~~l~~-~~d~i~ 442 (511)
+...++.+|||+|||+|+++..++.. + .+|+++|+++++++.+++++.. .+ +.++.+|..+.+.. .++.+.
T Consensus 19 ~~~~~~~~vLd~G~G~G~~~~~l~~~-~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi 95 (188)
T PRK14968 19 AVDKKGDRVLEVGTGSGIVAIVAAKN-G--KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVIL 95 (188)
T ss_pred hhccCCCEEEEEccccCHHHHHHHhh-c--ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEE
Confidence 44478899999999999999999987 3 8999999999888887766542 22 56666665443332 355554
Q ss_pred hcccCCc----------EEEEEcCCcc------HHHHHHHHHhCCCcEEEEh-HH--HHHHHHHHHHhcCC
Q psy7829 443 LNLHRGA----------KVLEIGSGSG------YLATLMAHLVGPTGHVTGL-EH--MMDIAIESIANIST 494 (511)
Q Consensus 443 ~~l~~~~----------~vLD~~~g~g------~~~~~l~~~l~~~g~v~~~-~~--ml~~a~~~~~~~~~ 494 (511)
.+.+-.. .-..+.+|.. .+...+.+.++|+|.++.+ .. -.+...+.+.+.|+
T Consensus 96 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~ 166 (188)
T PRK14968 96 FNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGF 166 (188)
T ss_pred ECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCC
Confidence 3321100 0001112211 2356667889999987665 11 13445556666665
No 305
>KOG1270|consensus
Probab=98.41 E-value=2e-07 Score=84.75 Aligned_cols=96 Identities=21% Similarity=0.322 Sum_probs=60.9
Q ss_pred CCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccc---------cccccccccccccccchhhhhc
Q psy7829 374 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH---------IDLIANETIEIIPHILDLCYLN 444 (511)
Q Consensus 374 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~---------v~~i~~d~~~~l~~~~d~i~~~ 444 (511)
|.+|||+|||+|-++..||+.. ..|+|||.+.++++.|.+....+. +++.+.+... ....||.+..-
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~-~~~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG-LTGKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh-cccccceeeeH
Confidence 6889999999999999999876 899999999999998887743211 3333333222 22224433210
Q ss_pred ccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 445 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 445 l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
.+++--..+-.++..+.+.++|+|+++..
T Consensus 166 -----evleHV~dp~~~l~~l~~~lkP~G~lfit 194 (282)
T KOG1270|consen 166 -----EVLEHVKDPQEFLNCLSALLKPNGRLFIT 194 (282)
T ss_pred -----HHHHHHhCHHHHHHHHHHHhCCCCceEee
Confidence 11111223445556677777887776654
No 306
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.40 E-value=2.3e-06 Score=81.17 Aligned_cols=101 Identities=26% Similarity=0.301 Sum_probs=82.1
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCccEEEe
Q psy7829 135 AKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPYDVIYY 213 (511)
Q Consensus 135 ~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I~~ 213 (511)
.+||-||.|.|..+..+.+.. +..+++.+|+++..++.|++.+.....+. ..++++++..|+.+... ...+||+|++
T Consensus 78 k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~-~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGA-DDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCccccc-CCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 699999999999999999986 67899999999999999999988753211 15889999999875333 2247999998
Q ss_pred cCCCC----------chHHHHHhhcccCcEEEEE
Q psy7829 214 GGCVS----------EVPSRVLNQLKKGGRILAP 237 (511)
Q Consensus 214 ~~~~~----------~~~~~~~~~LkpgG~l~~~ 237 (511)
+..-+ .+.+.+.+.|+++|.++.-
T Consensus 156 D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 156 DSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred cCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 75443 3448899999999999885
No 307
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.40 E-value=1.3e-06 Score=88.65 Aligned_cols=97 Identities=24% Similarity=0.264 Sum_probs=68.5
Q ss_pred CCEEEEEcCCccHHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829 134 GAKVLDLGSGSGYQTCVFAHMV---GPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV 210 (511)
Q Consensus 134 ~~~vLDiG~G~G~~~~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 210 (511)
+..|+|||||+|-++...+++. +...+|+++|.++.++...++.++.++ ..++|+++.+|+++... ..++|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~----w~~~V~vi~~d~r~v~l-pekvDI 261 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG----WGDKVTVIHGDMREVEL-PEKVDI 261 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT----TTTTEEEEES-TTTSCH-SS-EEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC----CCCeEEEEeCcccCCCC-CCceeE
Confidence 4679999999999987666543 345789999999998888777766654 45789999999987433 368999
Q ss_pred EEecCC----CC----chHHHHHhhcccCcEEE
Q psy7829 211 IYYGGC----VS----EVPSRVLNQLKKGGRIL 235 (511)
Q Consensus 211 I~~~~~----~~----~~~~~~~~~LkpgG~l~ 235 (511)
|++-.. .. ..+....+.|||||.++
T Consensus 262 IVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 262 IVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 997532 22 23356678999998774
No 308
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.39 E-value=2e-06 Score=82.20 Aligned_cols=92 Identities=22% Similarity=0.297 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829 117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA 196 (511)
Q Consensus 117 p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~ 196 (511)
|-+...+++.|. +.++..++|.-+|.|..+..+++.++ .++|+|+|.++.+++.+++++... ..+++++++
T Consensus 6 pVll~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~------~~R~~~i~~ 76 (305)
T TIGR00006 6 SVLLDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDF------EGRVVLIHD 76 (305)
T ss_pred chhHHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhc------CCcEEEEeC
Confidence 557778888886 67888999999999999999999884 499999999999999999988763 357999999
Q ss_pred cCCCCC-----CCCCCccEEEecCCC
Q psy7829 197 DAREGY-----LPEAPYDVIYYGGCV 217 (511)
Q Consensus 197 d~~~~~-----~~~~~fD~I~~~~~~ 217 (511)
+..+.. ....++|.|+.+..+
T Consensus 77 nF~~l~~~l~~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 77 NFANFFEHLDELLVTKIDGILVDLGV 102 (305)
T ss_pred CHHHHHHHHHhcCCCcccEEEEeccC
Confidence 876321 122568999877444
No 309
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.39 E-value=1.3e-06 Score=84.56 Aligned_cols=102 Identities=16% Similarity=0.119 Sum_probs=61.1
Q ss_pred cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHH--hh-cc-ccccccccccccccc-cccchhhhh
Q psy7829 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESI--AN-IS-TNHIDLIANETIEII-PHILDLCYL 443 (511)
Q Consensus 369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~--~~-~~-~~~v~~i~~d~~~~l-~~~~d~i~~ 443 (511)
+...++.+|||||||+|+++..++... + .+|+|+|++..+..++. ++ .. ..++.+...+..+.. ...||.+++
T Consensus 117 l~~~~g~~VLDvGCG~G~~~~~~~~~g-~-~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s 194 (314)
T TIGR00452 117 LSPLKGRTILDVGCGSGYHMWRMLGHG-A-KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFS 194 (314)
T ss_pred cCCCCCCEEEEeccCCcHHHHHHHHcC-C-CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEE
Confidence 456778999999999999999888664 3 58999999988776532 22 22 233444443322111 113444332
Q ss_pred cccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEE
Q psy7829 444 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG 477 (511)
Q Consensus 444 ~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~ 477 (511)
.. ++..-..+-.....+++.|+|||.++.
T Consensus 195 ~g-----vL~H~~dp~~~L~el~r~LkpGG~Lvl 223 (314)
T TIGR00452 195 MG-----VLYHRKSPLEHLKQLKHQLVIKGELVL 223 (314)
T ss_pred cc-----hhhccCCHHHHHHHHHHhcCCCCEEEE
Confidence 11 111112233456778888899998874
No 310
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.38 E-value=1.5e-06 Score=81.72 Aligned_cols=100 Identities=21% Similarity=0.335 Sum_probs=68.3
Q ss_pred CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccc--cccchhhhhcccCCc
Q psy7829 372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEII--PHILDLCYLNLHRGA 449 (511)
Q Consensus 372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l--~~~~d~i~~~l~~~~ 449 (511)
..+.+|||+|||+|.++..+++.. +..+++++|+++++++.+.++.. .++.++.+|..... +..+|.++...
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~vi~~~---- 106 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS-ENVQFICGDAEKLPLEDSSFDLIVSNL---- 106 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC-CCCeEEecchhhCCCCCCceeEEEEhh----
Confidence 345789999999999999999886 67889999999999988887765 36777766643321 23344443321
Q ss_pred EEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 450 KVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 450 ~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
++......-.+...+.+.++|+|.++..
T Consensus 107 -~l~~~~~~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 107 -ALQWCDDLSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred -hhhhccCHHHHHHHHHHHcCCCcEEEEE
Confidence 1111123344566777888998888754
No 311
>PRK06922 hypothetical protein; Provisional
Probab=98.38 E-value=9.4e-07 Score=91.74 Aligned_cols=108 Identities=11% Similarity=0.178 Sum_probs=71.2
Q ss_pred cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc--ccccccccccccc----ccccchhhh
Q psy7829 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST--NHIDLIANETIEI----IPHILDLCY 442 (511)
Q Consensus 369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~--~~v~~i~~d~~~~----l~~~~d~i~ 442 (511)
....++.+|||+|||+|..+..+++.. |+++|+|+|+++.+++.++++... .+++++++|.... .+..+|.++
T Consensus 414 ~d~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVV 492 (677)
T PRK06922 414 LDYIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIV 492 (677)
T ss_pred hhhcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEE
Confidence 344578999999999999999999877 779999999999999988776543 3466677775442 123345443
Q ss_pred hcccCCcEEEE-Ec-----C---CccHHHHHHHHHhCCCcEEEEh
Q psy7829 443 LNLHRGAKVLE-IG-----S---GSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 443 ~~l~~~~~vLD-~~-----~---g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
.+..-.. +++ +. . ....+...+.+.|+|||.++..
T Consensus 493 sn~vLH~-L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 493 YSSILHE-LFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred EchHHHh-hhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 3211000 000 00 0 1123456677889999998876
No 312
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.37 E-value=1.4e-06 Score=80.17 Aligned_cols=98 Identities=17% Similarity=0.139 Sum_probs=63.4
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHH-HHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829 132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEA-SLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV 210 (511)
Q Consensus 132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~-a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 210 (511)
.++.+|||+|||+|.++..+++.. ..+|+++|+++.++.. .+++..-. .+...|++ ..+..+.+..-..+|+
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~g--a~~v~avD~~~~~l~~~l~~~~~v~---~~~~~ni~--~~~~~~~~~d~~~~Dv 146 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKG--AKEVYGVDVGYNQLAEKLRQDERVK---VLERTNIR--YVTPADIFPDFATFDV 146 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHHHhcCCCee---EeecCCcc--cCCHhHcCCCceeeeE
Confidence 367799999999999999999973 4689999999987765 22221100 00112333 1121122222246888
Q ss_pred EEecCCCCchHHHHHhhcccCcEEEEEEc
Q psy7829 211 IYYGGCVSEVPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 211 I~~~~~~~~~~~~~~~~LkpgG~l~~~~~ 239 (511)
++++.. .+...+.+.|+| |.+++-+-
T Consensus 147 sfiS~~--~~l~~i~~~l~~-~~~~~L~K 172 (228)
T TIGR00478 147 SFISLI--SILPELDLLLNP-NDLTLLFK 172 (228)
T ss_pred EEeehH--hHHHHHHHHhCc-CeEEEEcC
Confidence 877643 367899999999 88877553
No 313
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.37 E-value=1.4e-06 Score=85.28 Aligned_cols=108 Identities=18% Similarity=0.201 Sum_probs=70.4
Q ss_pred HHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----cccccccccccccc-c
Q psy7829 360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANETIEI-I 434 (511)
Q Consensus 360 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d~~~~-l 434 (511)
...++.. +..+++.+|||||||+|.+++.+++.. |+.+++++|. +++++.+++++. .++++++.+|..+. +
T Consensus 138 ~~~l~~~--~~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~ 213 (306)
T TIGR02716 138 IQLLLEE--AKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY 213 (306)
T ss_pred HHHHHHH--cCCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC
Confidence 3344454 667888999999999999999999998 7799999997 566666555544 24577887775532 2
Q ss_pred cccchhhhhcccCCcEEEEEcCCcc---HHHHHHHHHhCCCcEEEEh
Q psy7829 435 PHILDLCYLNLHRGAKVLEIGSGSG---YLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 435 ~~~~d~i~~~l~~~~~vLD~~~g~g---~~~~~l~~~l~~~g~v~~~ 478 (511)
+. .|.++.. .++ ...+.. .+...+++.++|||+++.+
T Consensus 214 ~~-~D~v~~~-----~~l-h~~~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 214 PE-ADAVLFC-----RIL-YSANEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred CC-CCEEEeE-----hhh-hcCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 22 2332211 011 011222 2455677888999998776
No 314
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.37 E-value=1e-06 Score=83.57 Aligned_cols=73 Identities=26% Similarity=0.359 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-cccccccccccccc
Q psy7829 356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-TNHIDLIANETIEI 433 (511)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-~~~v~~i~~d~~~~ 433 (511)
.+..+..+++. +...++++|||||||+|.++..+++.. .+|+++|+++++++.+.++.. ..+++++++|..+.
T Consensus 14 d~~i~~~i~~~--~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 14 DESVIQKIVEA--ANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKV 87 (253)
T ss_pred CHHHHHHHHHh--cCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcC
Confidence 45677778876 677889999999999999999999887 569999999999998887765 46788888887553
No 315
>PRK00536 speE spermidine synthase; Provisional
Probab=98.37 E-value=4.2e-06 Score=78.43 Aligned_cols=99 Identities=12% Similarity=0.009 Sum_probs=76.8
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEE
Q psy7829 132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVI 211 (511)
Q Consensus 132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 211 (511)
+...+||=||.|-|..+..+.++ +. +|+.+|+++++++.+++.+...... +..+|++++.. ..+ ...++||+|
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh--~~-~v~mVeID~~Vv~~~k~~lP~~~~~-~~DpRv~l~~~-~~~--~~~~~fDVI 143 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY--DT-HVDFVQADEKILDSFISFFPHFHEV-KNNKNFTHAKQ-LLD--LDIKKYDLI 143 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc--CC-eeEEEECCHHHHHHHHHHCHHHHHh-hcCCCEEEeeh-hhh--ccCCcCCEE
Confidence 45689999999999999999997 33 8999999999999999976653211 35678888762 211 123689999
Q ss_pred EecCCC-CchHHHHHhhcccCcEEEEE
Q psy7829 212 YYGGCV-SEVPSRVLNQLKKGGRILAP 237 (511)
Q Consensus 212 ~~~~~~-~~~~~~~~~~LkpgG~l~~~ 237 (511)
+++... ..+.+.+++.|+|||.++.-
T Consensus 144 IvDs~~~~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 144 ICLQEPDIHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred EEcCCCChHHHHHHHHhcCCCcEEEEC
Confidence 999544 45668899999999999873
No 316
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.36 E-value=8.1e-07 Score=89.08 Aligned_cols=121 Identities=13% Similarity=0.169 Sum_probs=78.1
Q ss_pred CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc-----cccccccccccccc------ccchh
Q psy7829 372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN-----HIDLIANETIEIIP------HILDL 440 (511)
Q Consensus 372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~-----~v~~i~~d~~~~l~------~~~d~ 440 (511)
.++.+|||+|||+|.+++.++.. ...+|+++|+++.+++.+.+|+..+ +++++++|..+.+. ..||.
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 46899999999999999876643 2269999999998888888777643 56788888766542 24666
Q ss_pred hhhcccCCc---EEEE-EcCCccHHHHHHHHHhCCCcEEEEh--------HHHHHHHHHHHHhcCC
Q psy7829 441 CYLNLHRGA---KVLE-IGSGSGYLATLMAHLVGPTGHVTGL--------EHMMDIAIESIANIST 494 (511)
Q Consensus 441 i~~~l~~~~---~vLD-~~~g~g~~~~~l~~~l~~~g~v~~~--------~~ml~~a~~~~~~~~~ 494 (511)
++.+.+.-. .-+. ...+-..+.....+.++|+|.++.. +...+...+.+...+.
T Consensus 297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~ 362 (396)
T PRK15128 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGR 362 (396)
T ss_pred EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCC
Confidence 666544211 0000 0011112223455778999998864 4555666666665553
No 317
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.36 E-value=6.6e-06 Score=80.06 Aligned_cols=121 Identities=18% Similarity=0.099 Sum_probs=89.3
Q ss_pred CcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhC---C----------------------------Cc
Q psy7829 111 AGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVG---P----------------------------TG 159 (511)
Q Consensus 111 ~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~---~----------------------------~~ 159 (511)
+..-..+.+.+.++.+.. .+++..++|-=||||.+.+..|.... | .+
T Consensus 171 g~ApLketLAaAil~lag--w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a 248 (381)
T COG0116 171 GPAPLKETLAAAILLLAG--WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERA 248 (381)
T ss_pred CCCCchHHHHHHHHHHcC--CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHH
Confidence 333334455555555443 67778999999999999998887642 1 11
Q ss_pred -------eEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCC--------------
Q psy7829 160 -------KVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVS-------------- 218 (511)
Q Consensus 160 -------~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~-------------- 218 (511)
.++|+|+++.+++.|+.|+..+| ..+.|+|.++|+.....+...+|+|++|+|+-
T Consensus 249 ~~~~~~~~~~G~Did~r~i~~Ak~NA~~AG----v~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~ 324 (381)
T COG0116 249 RRGKELPIIYGSDIDPRHIEGAKANARAAG----VGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYR 324 (381)
T ss_pred hhcCccceEEEecCCHHHHHHHHHHHHhcC----CCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHH
Confidence 37799999999999999999988 46789999999986443337899999999982
Q ss_pred chHHHHHhhcccCcEEEEE
Q psy7829 219 EVPSRVLNQLKKGGRILAP 237 (511)
Q Consensus 219 ~~~~~~~~~LkpgG~l~~~ 237 (511)
.+.+.+++.++--+..++.
T Consensus 325 ~fg~~lk~~~~~ws~~v~t 343 (381)
T COG0116 325 EFGRTLKRLLAGWSRYVFT 343 (381)
T ss_pred HHHHHHHHHhcCCceEEEE
Confidence 1224566777777777774
No 318
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.35 E-value=1.1e-06 Score=80.18 Aligned_cols=60 Identities=23% Similarity=0.370 Sum_probs=48.7
Q ss_pred CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccc
Q psy7829 370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIE 432 (511)
Q Consensus 370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~ 432 (511)
.+.++.+|||+|||+|..+..+++.. +..+++|+|+++++++.++++.. ++.+++++..+
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~--~~~~~~~d~~~ 99 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLP--NINIIQGSLFD 99 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCC--CCcEEEeeccC
Confidence 45678899999999999999998876 45899999999999999988753 45666665443
No 319
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=1.5e-06 Score=80.68 Aligned_cols=72 Identities=24% Similarity=0.374 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-cccccccccccccc
Q psy7829 357 ERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-TNHIDLIANETIEI 433 (511)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-~~~v~~i~~d~~~~ 433 (511)
+..+.+++.. +.+.+++.|||||+|.|.+|..|++.. .+|++||+|..++..-.+... ..|++++++|+++.
T Consensus 16 ~~v~~kIv~~--a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~ 88 (259)
T COG0030 16 KNVIDKIVEA--ANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKF 88 (259)
T ss_pred HHHHHHHHHh--cCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcC
Confidence 3567788887 788889999999999999999999987 789999999999998887775 78899999998765
No 320
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.33 E-value=3e-06 Score=77.98 Aligned_cols=98 Identities=16% Similarity=0.073 Sum_probs=62.4
Q ss_pred cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc---------------ccccccccccccc
Q psy7829 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST---------------NHIDLIANETIEI 433 (511)
Q Consensus 369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~---------------~~v~~i~~d~~~~ 433 (511)
+...++.+|||+|||.|..+++||... .+|+|||+++..++++....+. .+|++.++|..+.
T Consensus 33 ~~~~~~~rvL~~gCG~G~da~~LA~~G---~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l 109 (218)
T PRK13255 33 LALPAGSRVLVPLCGKSLDMLWLAEQG---HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFAL 109 (218)
T ss_pred hCCCCCCeEEEeCCCChHhHHHHHhCC---CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCC
Confidence 355678899999999999999999754 7999999999888876433222 3355555554443
Q ss_pred ccccchhhhhcccCCcEEEEEcCC----c---cHHHHHHHHHhCCCcEEE
Q psy7829 434 IPHILDLCYLNLHRGAKVLEIGSG----S---GYLATLMAHLVGPTGHVT 476 (511)
Q Consensus 434 l~~~~d~i~~~l~~~~~vLD~~~g----~---g~~~~~l~~~l~~~g~v~ 476 (511)
.+.. ...-..++|-+|- + ......+.+.|+|+|.+.
T Consensus 110 ~~~~-------~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 110 TAAD-------LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred Cccc-------CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEE
Confidence 2110 1112345554431 1 123566778889997644
No 321
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.33 E-value=9.8e-07 Score=79.74 Aligned_cols=112 Identities=18% Similarity=0.309 Sum_probs=77.0
Q ss_pred CCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHh---hcccccccccccccccccc-----ccchhhhhcc
Q psy7829 374 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA---NISTNHIDLIANETIEIIP-----HILDLCYLNL 445 (511)
Q Consensus 374 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~---~~~~~~v~~i~~d~~~~l~-----~~~d~i~~~l 445 (511)
...+||||||.|.+.+.+|... |+..++|||+....+.++.+ ..+..|+.++++|+...+. ..++.++.+.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred CCeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence 3389999999999999999988 88999999999777766544 3468899999998776543 3445555544
Q ss_pred cCCc--------EEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHh
Q psy7829 446 HRGA--------KVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIAN 491 (511)
Q Consensus 446 ~~~~--------~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~ 491 (511)
+..+ +++ +-.+...+++.|+|||.+... +...+.+.+.+..
T Consensus 97 PDPWpK~rH~krRl~-----~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~ 148 (195)
T PF02390_consen 97 PDPWPKKRHHKRRLV-----NPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEE 148 (195)
T ss_dssp -----SGGGGGGSTT-----SHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred CCCCcccchhhhhcC-----CchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 4322 333 234567788999999999877 5555555555555
No 322
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.33 E-value=1.3e-06 Score=81.41 Aligned_cols=98 Identities=18% Similarity=0.178 Sum_probs=65.5
Q ss_pred CEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----ccccccccccccc-ccccchhhhhcccCCc
Q psy7829 375 AKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANETIEI-IPHILDLCYLNLHRGA 449 (511)
Q Consensus 375 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~~~-l~~~~d~i~~~l~~~~ 449 (511)
++|||||||+|..+..+++.+ ++.+|+++|++++++..+.+++.. .++.++..|..+. .+..+|.++...
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~---- 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFE---- 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHH----
Confidence 479999999999999999887 558999999999999888777643 3456666654322 223344443211
Q ss_pred EEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 450 KVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 450 ~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
++..-.....+...+.+.|+|+|.++..
T Consensus 76 -~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 103 (224)
T smart00828 76 -VIHHIKDKMDLFSNISRHLKDGGHLVLA 103 (224)
T ss_pred -HHHhCCCHHHHHHHHHHHcCCCCEEEEE
Confidence 0000012334556778888999988765
No 323
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.32 E-value=1.7e-06 Score=86.75 Aligned_cols=72 Identities=13% Similarity=0.115 Sum_probs=52.8
Q ss_pred CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cccccccccccccccc---ccchhhhhcc
Q psy7829 372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEIIP---HILDLCYLNL 445 (511)
Q Consensus 372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~l~---~~~d~i~~~l 445 (511)
.++.+|||+|||+|.+++.+|... .+|+++|+++..++.+++|.. ..+++++.+|..+.+. ..+|.++.+.
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DP 308 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNP 308 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECC
Confidence 456899999999999999999654 789999999888887776654 4567888887654432 1245555543
Q ss_pred c
Q psy7829 446 H 446 (511)
Q Consensus 446 ~ 446 (511)
+
T Consensus 309 P 309 (374)
T TIGR02085 309 P 309 (374)
T ss_pred C
Confidence 3
No 324
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.32 E-value=1.2e-06 Score=78.33 Aligned_cols=100 Identities=23% Similarity=0.248 Sum_probs=68.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEE
Q psy7829 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIY 212 (511)
Q Consensus 133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~ 212 (511)
...+.||.|+|-|.+|..+.... --+|..+|..+..++.|++.+.... ..-.++++.-+.+..+..+.||+|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~-----~~v~~~~~~gLQ~f~P~~~~YDlIW 127 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDN-----PRVGEFYCVGLQDFTPEEGKYDLIW 127 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGG-----CCEEEEEES-GGG----TT-EEEEE
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccC-----CCcceEEecCHhhccCCCCcEeEEE
Confidence 34689999999999998665443 2479999999999999998866521 1235677776665444457999999
Q ss_pred ecCCCCch--------HHHHHhhcccCcEEEEEEc
Q psy7829 213 YGGCVSEV--------PSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 213 ~~~~~~~~--------~~~~~~~LkpgG~l~~~~~ 239 (511)
+..++-++ ++++.+.|+|+|.+++--+
T Consensus 128 ~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN 162 (218)
T PF05891_consen 128 IQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKEN 162 (218)
T ss_dssp EES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEec
Confidence 98877554 4789999999999998533
No 325
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.30 E-value=2.2e-06 Score=77.43 Aligned_cols=90 Identities=16% Similarity=0.239 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccc
Q psy7829 354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANET 430 (511)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~ 430 (511)
|.+......++.. .....++.+|||+|||+|.+++.++... . .+|+++|++++.++.+++|+. ..+++++++|.
T Consensus 35 p~~d~v~e~l~~~-l~~~~~~~~vLDl~~GsG~l~l~~lsr~-a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~ 111 (199)
T PRK10909 35 PTTDRVRETLFNW-LAPVIVDARCLDCFAGSGALGLEALSRY-A-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNA 111 (199)
T ss_pred cCCHHHHHHHHHH-HhhhcCCCEEEEcCCCccHHHHHHHHcC-C-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchH
Confidence 4555555445554 1233568899999999999999754444 2 799999999888877666654 45688888886
Q ss_pred ccccc---ccchhhhhccc
Q psy7829 431 IEIIP---HILDLCYLNLH 446 (511)
Q Consensus 431 ~~~l~---~~~d~i~~~l~ 446 (511)
.+.++ ..+|.++.+.+
T Consensus 112 ~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 112 LSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred HHHHhhcCCCceEEEECCC
Confidence 65442 23566555544
No 326
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.29 E-value=2.7e-06 Score=84.44 Aligned_cols=100 Identities=16% Similarity=0.194 Sum_probs=80.6
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCccEEE
Q psy7829 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPYDVIY 212 (511)
Q Consensus 134 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I~ 212 (511)
+.+|||+.||+|..++.++...+...+|+++|+++.+++.+++|++.++ ..++++++.|+..... ....||+|.
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~-----~~~~~v~~~Da~~~l~~~~~~fDvId 119 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS-----VENIEVPNEDAANVLRYRNRKFHVID 119 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEchhHHHHHHHhCCCCCEEE
Confidence 3689999999999999999875223579999999999999999998864 4478999999875332 125799999
Q ss_pred ecCCCC--chHHHHHhhcccCcEEEEEE
Q psy7829 213 YGGCVS--EVPSRVLNQLKKGGRILAPI 238 (511)
Q Consensus 213 ~~~~~~--~~~~~~~~~LkpgG~l~~~~ 238 (511)
.++.-. .+.+.+.+.+++||.|+++.
T Consensus 120 lDPfGs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 120 IDPFGTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred eCCCCCcHHHHHHHHHhcccCCEEEEEe
Confidence 987322 45578889999999999963
No 327
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.29 E-value=8.1e-07 Score=78.08 Aligned_cols=85 Identities=16% Similarity=0.141 Sum_probs=56.8
Q ss_pred cCCCCCCCCCCHHHHHHHH--HHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-ccc
Q psy7829 346 HGSAPDNGPSSERSIAHIL--DLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-TNH 422 (511)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-~~~ 422 (511)
.+..|+....+..+..+-- -.+.++-..-.++||+|||.|.+|..||..+ .+++++|+++..++.+++++. .++
T Consensus 14 a~~DPW~~~~~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~~~ 90 (201)
T PF05401_consen 14 ANDDPWGFETSWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGLPH 90 (201)
T ss_dssp TSSSGGGTTT-HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT-SS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCCCC
Confidence 3344444445556654321 1112455556789999999999999999998 799999999999999998877 588
Q ss_pred ccccccccccc
Q psy7829 423 IDLIANETIEI 433 (511)
Q Consensus 423 v~~i~~d~~~~ 433 (511)
|+++..+..+.
T Consensus 91 V~~~~~dvp~~ 101 (201)
T PF05401_consen 91 VEWIQADVPEF 101 (201)
T ss_dssp EEEEES-TTT-
T ss_pred eEEEECcCCCC
Confidence 98887775444
No 328
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.28 E-value=2.5e-06 Score=84.70 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=47.9
Q ss_pred CCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc---cccccccccccccc
Q psy7829 374 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST---NHIDLIANETIEII 434 (511)
Q Consensus 374 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~---~~v~~i~~d~~~~l 434 (511)
+.+|||+|||+|.+++.+++.. .+|+++|++.++++.+++|+.. .|++++.+|..+.+
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~ 258 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFT 258 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHH
Confidence 3479999999999999999876 6999999999999888887654 46778888865544
No 329
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.27 E-value=2.7e-06 Score=79.91 Aligned_cols=106 Identities=26% Similarity=0.329 Sum_probs=78.9
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCC-Ccc
Q psy7829 132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEA-PYD 209 (511)
Q Consensus 132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~-~fD 209 (511)
+...+||-||.|.|..+..+.+.. +..+++.+|+++.+++.|++.+...... +..++++++.+|+..... ... +||
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~-~~d~r~~i~~~Dg~~~l~~~~~~~yD 152 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEG-LDDPRVRIIIGDGRKFLKETQEEKYD 152 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTT-GGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred CCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccc-cCCCceEEEEhhhHHHHHhccCCccc
Confidence 468899999999999999998764 4578999999999999999987653211 235789999999864221 123 899
Q ss_pred EEEecCCCC----------chHHHHHhhcccCcEEEEEEc
Q psy7829 210 VIYYGGCVS----------EVPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 210 ~I~~~~~~~----------~~~~~~~~~LkpgG~l~~~~~ 239 (511)
+|+++..-+ .+.+.+.+.|+|||.+++-..
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 999875542 234889999999999998654
No 330
>PHA03411 putative methyltransferase; Provisional
Probab=98.26 E-value=2.2e-06 Score=80.07 Aligned_cols=87 Identities=18% Similarity=0.200 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccc
Q psy7829 355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEII 434 (511)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l 434 (511)
.||+.+...+. .....+.+|||+|||+|.+++.+++.. +..+|+++|+++.+++.++++. ++++++++|..+..
T Consensus 49 fTP~~i~~~f~---~~~~~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~--~~v~~v~~D~~e~~ 122 (279)
T PHA03411 49 FTPEGLAWDFT---IDAHCTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL--PEAEWITSDVFEFE 122 (279)
T ss_pred cCCHHHHHHHH---hccccCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC--cCCEEEECchhhhc
Confidence 35666654432 234456799999999999999888775 3379999999999999988875 46788888876654
Q ss_pred -cccchhhhhcccC
Q psy7829 435 -PHILDLCYLNLHR 447 (511)
Q Consensus 435 -~~~~d~i~~~l~~ 447 (511)
+..+|.++.+.+-
T Consensus 123 ~~~kFDlIIsNPPF 136 (279)
T PHA03411 123 SNEKFDVVISNPPF 136 (279)
T ss_pred ccCCCcEEEEcCCc
Confidence 3457777776543
No 331
>PRK00811 spermidine synthase; Provisional
Probab=98.25 E-value=2.7e-06 Score=81.86 Aligned_cols=103 Identities=13% Similarity=0.147 Sum_probs=73.3
Q ss_pred CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc--------cccccccccccccccc---ccc
Q psy7829 370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS--------TNHIDLIANETIEIIP---HIL 438 (511)
Q Consensus 370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~--------~~~v~~i~~d~~~~l~---~~~ 438 (511)
..+.+.+||+||||+|..+..+.+.. +..+|+++|+++++++.+++.+. .++++++.+|+...+. ..+
T Consensus 73 ~~~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~y 151 (283)
T PRK00811 73 AHPNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSF 151 (283)
T ss_pred hCCCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcc
Confidence 34567899999999999999988753 33689999999999998887653 4568888888776653 456
Q ss_pred hhhhhcccCCcEEEEEcCC----ccHHHHHHHHHhCCCcEEEEh
Q psy7829 439 DLCYLNLHRGAKVLEIGSG----SGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 439 d~i~~~l~~~~~vLD~~~g----~g~~~~~l~~~l~~~g~v~~~ 478 (511)
|.++.+..... +.. +-.+...+.+.|+|+|.++..
T Consensus 152 DvIi~D~~dp~-----~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 152 DVIIVDSTDPV-----GPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred cEEEECCCCCC-----CchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 76666543221 111 122344667889999988764
No 332
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=6.7e-06 Score=73.29 Aligned_cols=97 Identities=28% Similarity=0.366 Sum_probs=74.9
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC--------
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY-------- 202 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-------- 202 (511)
++++.+|+|+|+.+|.++..+++..++.+.|+++|+.|-. ..++|.++++|++...
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----------------~~~~V~~iq~d~~~~~~~~~l~~~ 106 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----------------PIPGVIFLQGDITDEDTLEKLLEA 106 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----------------cCCCceEEeeeccCccHHHHHHHH
Confidence 5689999999999999999999999888889999997642 2456999999997432
Q ss_pred CCCCCccEEEecCCC--------Cch---------HHHHHhhcccCcEEEEEEccCCC
Q psy7829 203 LPEAPYDVIYYGGCV--------SEV---------PSRVLNQLKKGGRILAPIGPMDD 243 (511)
Q Consensus 203 ~~~~~fD~I~~~~~~--------~~~---------~~~~~~~LkpgG~l~~~~~~~~~ 243 (511)
....++|+|+++.+. .+. ++-+...|+|||.+++.+.....
T Consensus 107 l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~ 164 (205)
T COG0293 107 LGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED 164 (205)
T ss_pred cCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC
Confidence 122457999998765 111 14456799999999998765444
No 333
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=7.3e-06 Score=81.25 Aligned_cols=105 Identities=15% Similarity=0.234 Sum_probs=75.0
Q ss_pred hcCCCCCCEEEEEeccccHHHHHHHHHhCC-CcEEEEEcCCHHHHH---HHHhhccccccccccccccccccccchhhhh
Q psy7829 368 YLNLHRGAKVLEIGSGSGYLATLMAHLVGP-TGHVTGLEHMMDIAI---ESIANISTNHIDLIANETIEIIPHILDLCYL 443 (511)
Q Consensus 368 ~~~~~~~~~vLdiG~G~G~~~~~la~~~~~-~~~v~~id~~~~~~~---~~~~~~~~~~v~~i~~d~~~~l~~~~d~i~~ 443 (511)
.+..++|++|||+.+++|.-|..+|..+.. ...|+++|++...++ .+.++++..|+.++..|+..........
T Consensus 151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~--- 227 (355)
T COG0144 151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGG--- 227 (355)
T ss_pred HcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccccccc---
Confidence 478899999999999999999999998854 345699999975555 5666777888777776654332221110
Q ss_pred cccCCcEEEEEcC-CccHH-------------------------HHHHHHHhCCCcEEE
Q psy7829 444 NLHRGAKVLEIGS-GSGYL-------------------------ATLMAHLVGPTGHVT 476 (511)
Q Consensus 444 ~l~~~~~vLD~~~-g~g~~-------------------------~~~l~~~l~~~g~v~ 476 (511)
.+.+..++|..| |+|.+ ....++.++|||.++
T Consensus 228 -~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LV 285 (355)
T COG0144 228 -EKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLV 285 (355)
T ss_pred -CcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 023456788888 89988 334456789999865
No 334
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=3.9e-06 Score=84.72 Aligned_cols=108 Identities=23% Similarity=0.355 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cccccccccccccc
Q psy7829 357 ERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEI 433 (511)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~ 433 (511)
......+++. +...+++++||+=||.|.+++.+|+.. .+|+|+|++++.++.|.+|.. ..|+.++.+++.+.
T Consensus 279 ekl~~~a~~~--~~~~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~ 353 (432)
T COG2265 279 EKLYETALEW--LELAGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEF 353 (432)
T ss_pred HHHHHHHHHH--HhhcCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHH
Confidence 3444455555 666788999999999999999999777 899999999877776666554 56677777776555
Q ss_pred ccc-----cchhhhhcccCCc---------------EEEEEcCCccHHHHHHHHHh
Q psy7829 434 IPH-----ILDLCYLNLHRGA---------------KVLEIGSGSGYLATLMAHLV 469 (511)
Q Consensus 434 l~~-----~~d~i~~~l~~~~---------------~vLD~~~g~g~~~~~l~~~l 469 (511)
.+. .++.++.+.+..+ +|+.+.|++.+++..+....
T Consensus 354 ~~~~~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p~~IvYVSCNP~TlaRDl~~L~ 409 (432)
T COG2265 354 TPAWWEGYKPDVVVVDPPRAGADREVLKQLAKLKPKRIVYVSCNPATLARDLAILA 409 (432)
T ss_pred hhhccccCCCCEEEECCCCCCCCHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHH
Confidence 443 2233333332211 45556666666666555443
No 335
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.23 E-value=3.1e-06 Score=80.86 Aligned_cols=72 Identities=13% Similarity=0.244 Sum_probs=58.8
Q ss_pred HHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc-cccccccccccc
Q psy7829 359 SIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST-NHIDLIANETIE 432 (511)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~-~~v~~i~~d~~~ 432 (511)
....+++. +.+.++..++|.+||.|..|..+++.++++++|+|+|++++++..+.+++.. .++++++++..+
T Consensus 7 ll~Evl~~--L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~ 79 (296)
T PRK00050 7 LLDEVVDA--LAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSN 79 (296)
T ss_pred cHHHHHHh--hCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHH
Confidence 34556666 6778899999999999999999999986689999999999999988877643 567777776443
No 336
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.22 E-value=7.6e-06 Score=76.08 Aligned_cols=105 Identities=20% Similarity=0.288 Sum_probs=69.7
Q ss_pred cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-ccccccccccccccc--cccchhhhhcc
Q psy7829 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-TNHIDLIANETIEII--PHILDLCYLNL 445 (511)
Q Consensus 369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-~~~v~~i~~d~~~~l--~~~~d~i~~~l 445 (511)
+...++.+|||+|||+|..+..+++..++.++++++|+++.++..+.++.. ..++.++.+|..+.. +..+|.+....
T Consensus 35 ~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~ 114 (223)
T TIGR01934 35 IGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAF 114 (223)
T ss_pred hccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEee
Confidence 455588999999999999999999887433799999999999888877764 345677666654422 12233332211
Q ss_pred cCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 446 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 446 ~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
.+.--...-.+...+.+.++|+|.++.+
T Consensus 115 -----~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 115 -----GLRNVTDIQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred -----eeCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence 0000112334456677888999988764
No 337
>PRK01581 speE spermidine synthase; Validated
Probab=98.22 E-value=1.6e-05 Score=77.43 Aligned_cols=109 Identities=14% Similarity=0.119 Sum_probs=72.9
Q ss_pred cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhh----------cccccccccccccccccc---
Q psy7829 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIAN----------ISTNHIDLIANETIEIIP--- 435 (511)
Q Consensus 369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~----------~~~~~v~~i~~d~~~~l~--- 435 (511)
.......+||+||||+|+.+..+.+.. +..+|+++|+++++++.+++. +..++++++.+|+.+.+.
T Consensus 146 ~~h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~ 224 (374)
T PRK01581 146 SKVIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPS 224 (374)
T ss_pred HhCCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcC
Confidence 445567899999999999888877643 457999999999999988852 234678888888777653
Q ss_pred ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 436 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 436 ~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
..+|.++.++.....-.--.--+-.+...+.+.|+|+|.++.-
T Consensus 225 ~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 225 SLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred CCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 3466666554322110000001223455677889999987765
No 338
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.22 E-value=4.7e-06 Score=80.61 Aligned_cols=100 Identities=16% Similarity=0.082 Sum_probs=60.2
Q ss_pred CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc--cccccccccccc-ccccchhhhhcccCCc
Q psy7829 373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN--HIDLIANETIEI-IPHILDLCYLNLHRGA 449 (511)
Q Consensus 373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~--~v~~i~~d~~~~-l~~~~d~i~~~l~~~~ 449 (511)
++.+|||+|||+|..+..+++.. .+|+|+|+++.+++.++++.... ++++...|.... ++..+|.++....-
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl-- 194 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVL-- 194 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchh--
Confidence 45599999999999999999753 79999999998888776655433 344444442211 12334433221100
Q ss_pred EEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 450 KVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 450 ~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
..++- .....+...+.+.++|+|.++.+
T Consensus 195 ~~l~~-~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 195 MFLNR-ERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred hhCCH-HHHHHHHHHHHHhcCCCcEEEEE
Confidence 00000 01123456677888999985544
No 339
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.21 E-value=8.1e-06 Score=75.01 Aligned_cols=99 Identities=22% Similarity=0.327 Sum_probs=76.4
Q ss_pred CCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHH---hhccccccccccccccccccc-----cchhhhhcc
Q psy7829 374 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESI---ANISTNHIDLIANETIEIIPH-----ILDLCYLNL 445 (511)
Q Consensus 374 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~---~~~~~~~v~~i~~d~~~~l~~-----~~d~i~~~l 445 (511)
...+||||||.|.+.+.+|+.- |+..++|||+....+.++. ...+..|+.+++.|+.+.++. .++.++.+.
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F 127 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINF 127 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEEC
Confidence 4689999999999999999987 8899999999865555544 445566899999998776542 556666666
Q ss_pred cCCc--------EEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 446 HRGA--------KVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 446 ~~~~--------~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
+..| +++ .-.+...+++.|+|+|.+...
T Consensus 128 PDPWpKkRH~KRRl~-----~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 128 PDPWPKKRHHKRRLT-----QPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred CCCCCCccccccccC-----CHHHHHHHHHHccCCCEEEEE
Confidence 5544 555 345678889999999999877
No 340
>PHA03412 putative methyltransferase; Provisional
Probab=98.21 E-value=4.3e-06 Score=76.37 Aligned_cols=89 Identities=13% Similarity=0.173 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhC--CCcEEEEEcCCHHHHHHHHhhccccccccccccccc
Q psy7829 355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVG--PTGHVTGLEHMMDIAIESIANISTNHIDLIANETIE 432 (511)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~--~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~ 432 (511)
.||..+++.+.. ....+.+|||+|||+|.+++.+++.+. +..+|+++|+++.+++.+++|.. ++.++++|...
T Consensus 34 fTP~~iAr~~~i---~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~--~~~~~~~D~~~ 108 (241)
T PHA03412 34 FTPIGLARDFTI---DACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP--EATWINADALT 108 (241)
T ss_pred CCCHHHHHHHHH---hccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc--CCEEEEcchhc
Confidence 366667665543 223478999999999999999998642 34699999999999999998863 47777777543
Q ss_pred c-ccccchhhhhcccCC
Q psy7829 433 I-IPHILDLCYLNLHRG 448 (511)
Q Consensus 433 ~-l~~~~d~i~~~l~~~ 448 (511)
. .+..+|.++.|.+-.
T Consensus 109 ~~~~~~FDlIIsNPPY~ 125 (241)
T PHA03412 109 TEFDTLFDMAISNPPFG 125 (241)
T ss_pred ccccCCccEEEECCCCC
Confidence 2 244688888887654
No 341
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.21 E-value=5e-06 Score=82.89 Aligned_cols=58 Identities=19% Similarity=0.226 Sum_probs=48.1
Q ss_pred CCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccccccc
Q psy7829 374 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEII 434 (511)
Q Consensus 374 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~l 434 (511)
+.+|||++||+|.+++.+++.. .+|+++|++..+++.+++|+. ..|++++.+|..+.+
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l 267 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFT 267 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHH
Confidence 3579999999999999999876 699999999999988777764 456788888876554
No 342
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.20 E-value=1.9e-07 Score=74.83 Aligned_cols=92 Identities=16% Similarity=0.259 Sum_probs=48.9
Q ss_pred EEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc---cc---ccccccccccccc-ccchhhhhcccCCcE
Q psy7829 378 LEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST---NH---IDLIANETIEIIP-HILDLCYLNLHRGAK 450 (511)
Q Consensus 378 LdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~---~~---v~~i~~d~~~~l~-~~~d~i~~~l~~~~~ 450 (511)
||||||+|.++..+.... +..+++++|+++.++..+++++.. .+ +++...+..+... ..+|.++...--..
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~- 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHH- 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhh-
Confidence 799999999999999887 679999999999998766655542 11 2222222222111 25555544321111
Q ss_pred EEEEcCCccHHHHHHHHHhCCCcEE
Q psy7829 451 VLEIGSGSGYLATLMAHLVGPTGHV 475 (511)
Q Consensus 451 vLD~~~g~g~~~~~l~~~l~~~g~v 475 (511)
+ -..-.+...+.+.|+|||.+
T Consensus 79 l----~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 L----EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -----S-HHHHHHHHTTT-TSS-EE
T ss_pred h----hhHHHHHHHHHHHcCCCCCC
Confidence 1 22334455667778888864
No 343
>KOG1541|consensus
Probab=98.20 E-value=6.2e-06 Score=72.92 Aligned_cols=128 Identities=14% Similarity=0.161 Sum_probs=80.3
Q ss_pred CCHHHHHHHHHHhhcCCCC--CCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccccccc---
Q psy7829 355 SSERSIAHILDLCYLNLHR--GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANE--- 429 (511)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~--~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d--- 429 (511)
...+...+.+++ +.+++ ..-|||||||||-.+..+... .-..+|+|++++|...+.+. +.. -+++.+|
T Consensus 32 IQ~em~eRaLEL--Lalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~-e~e-gdlil~DMG~ 104 (270)
T KOG1541|consen 32 IQAEMAERALEL--LALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVER-ELE-GDLILCDMGE 104 (270)
T ss_pred ehHHHHHHHHHH--hhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHh-hhh-cCeeeeecCC
Confidence 355778888888 55555 778999999999999888643 26799999999999998862 111 3444444
Q ss_pred ccccccccchhhhhcccCCcEEEEEcCCc---cHH--------HHHHHHHhCCCcEEEEh-----HHHHHHHHHHHHhcC
Q psy7829 430 TIEIIPHILDLCYLNLHRGAKVLEIGSGS---GYL--------ATLMAHLVGPTGHVTGL-----EHMMDIAIESIANIS 493 (511)
Q Consensus 430 ~~~~l~~~~d~i~~~l~~~~~vLD~~~g~---g~~--------~~~l~~~l~~~g~v~~~-----~~ml~~a~~~~~~~~ 493 (511)
.+.+-+..||.+... -.+.+-|+. ... ...++..++++++.+.- +.-++...+.+...|
T Consensus 105 GlpfrpGtFDg~ISI-----SAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aG 179 (270)
T KOG1541|consen 105 GLPFRPGTFDGVISI-----SAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAG 179 (270)
T ss_pred CCCCCCCccceEEEe-----eeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhc
Confidence 444445566654331 122344431 111 22356667788876654 555555555555555
Q ss_pred C
Q psy7829 494 T 494 (511)
Q Consensus 494 ~ 494 (511)
+
T Consensus 180 F 180 (270)
T KOG1541|consen 180 F 180 (270)
T ss_pred c
Confidence 4
No 344
>KOG1540|consensus
Probab=98.20 E-value=7.6e-06 Score=74.12 Aligned_cols=104 Identities=16% Similarity=0.226 Sum_probs=71.3
Q ss_pred cCCCCCCEEEEEeccccHHHHHHHHHhCCC-----cEEEEEcCCHHHHHHHHhhc---c---cccccccccccccccc--
Q psy7829 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPT-----GHVTGLEHMMDIAIESIANI---S---TNHIDLIANETIEIIP-- 435 (511)
Q Consensus 369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~-----~~v~~id~~~~~~~~~~~~~---~---~~~v~~i~~d~~~~l~-- 435 (511)
+....+.++||++||||-++..+.+.++.. ++|+..|++++|...+.++. + ...+.++++|+.+ +|
T Consensus 96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~-LpFd 174 (296)
T KOG1540|consen 96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED-LPFD 174 (296)
T ss_pred cCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCccc-CCCC
Confidence 677788999999999999999999988433 89999999999999876665 2 2336777777644 33
Q ss_pred -ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 436 -HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 436 -~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
..+|..-.. . -+--++-.-....+.++.|||||++..+
T Consensus 175 d~s~D~yTia--f---GIRN~th~~k~l~EAYRVLKpGGrf~cL 213 (296)
T KOG1540|consen 175 DDSFDAYTIA--F---GIRNVTHIQKALREAYRVLKPGGRFSCL 213 (296)
T ss_pred CCcceeEEEe--c---ceecCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 112211100 0 0111122333457888999999999877
No 345
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.20 E-value=3.9e-06 Score=83.23 Aligned_cols=67 Identities=21% Similarity=0.409 Sum_probs=46.3
Q ss_pred HHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccc
Q psy7829 358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANET 430 (511)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~ 430 (511)
..+..++.+ +...++ +|||+-||+|.+++.+|..+ .+|+|||+++++++.|++|.. ..|++++.+++
T Consensus 184 ~l~~~~~~~--l~~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 184 KLYEQALEW--LDLSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHHHH--CTT-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred HHHHHHHHH--hhcCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 344444444 555555 89999999999999999877 799999999998888877766 45566765543
No 346
>KOG0820|consensus
Probab=98.18 E-value=5.8e-06 Score=75.51 Aligned_cols=86 Identities=20% Similarity=0.267 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----ccccccccccccc
Q psy7829 357 ERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANETIE 432 (511)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d~~~ 432 (511)
+..+..++.- .++++++.|||+|.|||.+|..+-+.. .+|+|+|+|+.++..-.++.. ....+++.+|.+.
T Consensus 44 p~v~~~I~~k--a~~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK 118 (315)
T KOG0820|consen 44 PLVIDQIVEK--ADLKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLK 118 (315)
T ss_pred HHHHHHHHhc--cCCCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccccc
Confidence 4566666665 899999999999999999999998876 899999999999887666654 2457888898877
Q ss_pred cccccchhhhhcccC
Q psy7829 433 IIPHILDLCYLNLHR 447 (511)
Q Consensus 433 ~l~~~~d~i~~~l~~ 447 (511)
.-...+|.+..|++.
T Consensus 119 ~d~P~fd~cVsNlPy 133 (315)
T KOG0820|consen 119 TDLPRFDGCVSNLPY 133 (315)
T ss_pred CCCcccceeeccCCc
Confidence 665667777776654
No 347
>PRK06202 hypothetical protein; Provisional
Probab=98.18 E-value=6.2e-06 Score=77.23 Aligned_cols=59 Identities=24% Similarity=0.232 Sum_probs=47.2
Q ss_pred CCCCCCEEEEEeccccHHHHHHHHHh---CCCcEEEEEcCCHHHHHHHHhhccccccccccc
Q psy7829 370 NLHRGAKVLEIGSGSGYLATLMAHLV---GPTGHVTGLEHMMDIAIESIANISTNHIDLIAN 428 (511)
Q Consensus 370 ~~~~~~~vLdiG~G~G~~~~~la~~~---~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~ 428 (511)
...++.+|||+|||+|.++..+++.. +++.+|+|+|+++++++.++++....++.+...
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~ 118 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQA 118 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEE
Confidence 33577899999999999999988653 455699999999999999988876666655443
No 348
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.17 E-value=3.8e-06 Score=77.93 Aligned_cols=58 Identities=17% Similarity=0.304 Sum_probs=46.9
Q ss_pred CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----ccccccccccc
Q psy7829 371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANETI 431 (511)
Q Consensus 371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~ 431 (511)
..++.+|||+|||+|.++..+++.. .+|+|+|++++++..++++... .++++..+|..
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~ 114 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLL 114 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 5678999999999999999998753 7999999999999988877652 35667666543
No 349
>KOG2899|consensus
Probab=98.17 E-value=1.3e-05 Score=71.95 Aligned_cols=49 Identities=22% Similarity=0.379 Sum_probs=44.3
Q ss_pred CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc
Q psy7829 370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS 419 (511)
Q Consensus 370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~ 419 (511)
..-.+..+|||||-+|.+|+.+|+.+++ ..|+|+||++..++.|+++++
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r 103 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIR 103 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhcc
Confidence 4456788999999999999999999976 679999999999999999887
No 350
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.17 E-value=7.2e-06 Score=79.80 Aligned_cols=102 Identities=19% Similarity=0.224 Sum_probs=64.5
Q ss_pred CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc--cc--cccccccccccccccchhhhhccc
Q psy7829 371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST--NH--IDLIANETIEIIPHILDLCYLNLH 446 (511)
Q Consensus 371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~--~~--v~~i~~d~~~~l~~~~d~i~~~l~ 446 (511)
+.++.+|||+|||+|..+..+++.+....+++++|++++|++.+.+++.. ++ +..+++|..+..+..... ..
T Consensus 61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~----~~ 136 (301)
T TIGR03438 61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEP----AA 136 (301)
T ss_pred hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhccc----cc
Confidence 45778999999999999999998873247899999999999888877642 33 445677654322111000 00
Q ss_pred CCcEEEEEcCCcc--------HHHHHHHHHhCCCcEEE
Q psy7829 447 RGAKVLEIGSGSG--------YLATLMAHLVGPTGHVT 476 (511)
Q Consensus 447 ~~~~vLD~~~g~g--------~~~~~l~~~l~~~g~v~ 476 (511)
....++-.|...| .+...+++.|+|+|.++
T Consensus 137 ~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~l 174 (301)
T TIGR03438 137 GRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLL 174 (301)
T ss_pred CCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 1111221221122 23456778899999876
No 351
>PRK05785 hypothetical protein; Provisional
Probab=98.15 E-value=9.5e-06 Score=75.39 Aligned_cols=44 Identities=20% Similarity=0.276 Sum_probs=38.9
Q ss_pred CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhh
Q psy7829 372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIAN 417 (511)
Q Consensus 372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~ 417 (511)
.++.+|||+|||||.++..+++..+ .+|+|+|++++|++.++++
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~~--~~v~gvD~S~~Ml~~a~~~ 93 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVFK--YYVVALDYAENMLKMNLVA 93 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhcC--CEEEEECCCHHHHHHHHhc
Confidence 4578999999999999999998763 7999999999999988765
No 352
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.14 E-value=2.5e-05 Score=82.30 Aligned_cols=103 Identities=9% Similarity=0.057 Sum_probs=69.9
Q ss_pred CcccchhHHHHHHHHHHhhcCC-----CCCEEEEEcCCccHHHHHHHHHhCC-------CceEEEEeCCHHHHHHHHHHH
Q psy7829 111 AGVMNAPNQIADAAENLKLHLV-----DGAKVLDLGSGSGYQTCVFAHMVGP-------TGKVIGVEHIPELIEASLRNI 178 (511)
Q Consensus 111 ~~~~~~p~~~~~~~~~l~~~~~-----~~~~vLDiG~G~G~~~~~la~~~~~-------~~~v~~iD~~~~~~~~a~~~~ 178 (511)
|+..+.+.+...|++.+..... ...+|||.|||+|.+...+++.... ...++|+|+++.++..++.++
T Consensus 4 GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 4 GTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred cccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence 3444455677777776642211 3458999999999999988877621 257899999999999999998
Q ss_pred hccCCCcCCCCCeEEEEccCCCC---C--CCCCCccEEEecCCCC
Q psy7829 179 SKGNKDLLDSGRVRIVEADAREG---Y--LPEAPYDVIYYGGCVS 218 (511)
Q Consensus 179 ~~~~~~~~~~~~v~~~~~d~~~~---~--~~~~~fD~I~~~~~~~ 218 (511)
...+ ...+.+...|.... . ...+.||+|+.|+|+-
T Consensus 84 ~~~~-----~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~ 123 (524)
T TIGR02987 84 GEFA-----LLEINVINFNSLSYVLLNIESYLDLFDIVITNPPYG 123 (524)
T ss_pred hhcC-----CCCceeeecccccccccccccccCcccEEEeCCCcc
Confidence 7643 11344555553321 1 1125799999998873
No 353
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.13 E-value=8.8e-06 Score=73.59 Aligned_cols=99 Identities=29% Similarity=0.293 Sum_probs=80.3
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCC-ccEEE
Q psy7829 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAP-YDVIY 212 (511)
Q Consensus 134 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~I~ 212 (511)
+.+++|||+|.|.-++.+|-.. |+.+|+.+|.....+...++-..+. +.+|++++++.+++.... .. ||+|.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~~Kk~~FL~~~~~eL-----~L~nv~i~~~RaE~~~~~-~~~~D~vt 140 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESLGKKIAFLREVKKEL-----GLENVEIVHGRAEEFGQE-KKQYDVVT 140 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhc-cCCcEEEEccCchHHHHHHHHHHHh-----CCCCeEEehhhHhhcccc-cccCcEEE
Confidence 6899999999999999999665 8888999999999998888887774 578999999998764432 23 99999
Q ss_pred ecCCC--CchHHHHHhhcccCcEEEEEEc
Q psy7829 213 YGGCV--SEVPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 213 ~~~~~--~~~~~~~~~~LkpgG~l~~~~~ 239 (511)
+-+.. ..+..-+..++|+||.+++..+
T Consensus 141 sRAva~L~~l~e~~~pllk~~g~~~~~k~ 169 (215)
T COG0357 141 SRAVASLNVLLELCLPLLKVGGGFLAYKG 169 (215)
T ss_pred eehccchHHHHHHHHHhcccCCcchhhhH
Confidence 87654 4455778899999999876433
No 354
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.12 E-value=5.6e-05 Score=70.37 Aligned_cols=100 Identities=15% Similarity=0.175 Sum_probs=78.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHhccCCCcCCCCC-eEEEEccCCCCC--C-CCCC
Q psy7829 133 DGAKVLDLGSGSGYQTCVFAHMVGP-TGKVIGVEHIPELIEASLRNISKGNKDLLDSGR-VRIVEADAREGY--L-PEAP 207 (511)
Q Consensus 133 ~~~~vLDiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~-v~~~~~d~~~~~--~-~~~~ 207 (511)
..-+||||.||.|....-....... ...+...|.|+..++..++.++..| ..+ ++|.++|+++.. . ....
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g-----L~~i~~f~~~dAfd~~~l~~l~p~ 209 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG-----LEDIARFEQGDAFDRDSLAALDPA 209 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC-----CccceEEEecCCCCHhHhhccCCC
Confidence 4568999999999998887777632 2678999999999999999999875 444 499999998531 1 1244
Q ss_pred ccEEEecCCCCchH---------HHHHhhcccCcEEEEE
Q psy7829 208 YDVIYYGGCVSEVP---------SRVLNQLKKGGRILAP 237 (511)
Q Consensus 208 fD~I~~~~~~~~~~---------~~~~~~LkpgG~l~~~ 237 (511)
.++++++..++-++ ..+.+.+.|||.++..
T Consensus 210 P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyT 248 (311)
T PF12147_consen 210 PTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYT 248 (311)
T ss_pred CCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 79999887765443 4577889999999874
No 355
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.11 E-value=9e-06 Score=72.09 Aligned_cols=94 Identities=18% Similarity=0.196 Sum_probs=58.8
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCC
Q psy7829 120 IADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAR 199 (511)
Q Consensus 120 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 199 (511)
+..+++.+. ..++...|-|+|||.+.++..+.. .-+|+.+|+-.. |-.+..+|+.
T Consensus 60 vd~iI~~l~-~~~~~~viaD~GCGdA~la~~~~~----~~~V~SfDLva~--------------------n~~Vtacdia 114 (219)
T PF05148_consen 60 VDVIIEWLK-KRPKSLVIADFGCGDAKLAKAVPN----KHKVHSFDLVAP--------------------NPRVTACDIA 114 (219)
T ss_dssp HHHHHHHHC-TS-TTS-EEEES-TT-HHHHH--S-------EEEEESS-S--------------------STTEEES-TT
T ss_pred HHHHHHHHH-hcCCCEEEEECCCchHHHHHhccc----CceEEEeeccCC--------------------CCCEEEecCc
Confidence 355677775 234467899999999988865533 335999998532 2246779998
Q ss_pred CCCCCCCCccEEEecCCC-----CchHHHHHhhcccCcEEEEEE
Q psy7829 200 EGYLPEAPYDVIYYGGCV-----SEVPSRVLNQLKKGGRILAPI 238 (511)
Q Consensus 200 ~~~~~~~~fD~I~~~~~~-----~~~~~~~~~~LkpgG~l~~~~ 238 (511)
..+.++++.|++++..++ ..+..++.|.|||||.|.+.-
T Consensus 115 ~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAE 158 (219)
T PF05148_consen 115 NVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAE 158 (219)
T ss_dssp S-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEE
Confidence 777677999999887665 345689999999999999853
No 356
>KOG2187|consensus
Probab=98.11 E-value=6.4e-06 Score=82.05 Aligned_cols=116 Identities=16% Similarity=0.136 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829 117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA 196 (511)
Q Consensus 117 p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~ 196 (511)
+.++..+-+++. +..+..+||++||||.++..+|+...+ |+|+|+++++++.|+.|+..+| ..|.+|+++
T Consensus 369 evLys~i~e~~~--l~~~k~llDv~CGTG~iglala~~~~~---ViGvEi~~~aV~dA~~nA~~Ng-----isNa~Fi~g 438 (534)
T KOG2187|consen 369 EVLYSTIGEWAG--LPADKTLLDVCCGTGTIGLALARGVKR---VIGVEISPDAVEDAEKNAQING-----ISNATFIVG 438 (534)
T ss_pred HHHHHHHHHHhC--CCCCcEEEEEeecCCceehhhhccccc---eeeeecChhhcchhhhcchhcC-----ccceeeeec
Confidence 344555556654 777889999999999999999998754 9999999999999999999985 679999999
Q ss_pred cCCCCCCC-----CCCcc-EEEecCCCCch----HHHHHhhcccCcEEEEEEccCC
Q psy7829 197 DAREGYLP-----EAPYD-VIYYGGCVSEV----PSRVLNQLKKGGRILAPIGPMD 242 (511)
Q Consensus 197 d~~~~~~~-----~~~fD-~I~~~~~~~~~----~~~~~~~LkpgG~l~~~~~~~~ 242 (511)
-+++.+.. .++=+ +++++.+-..+ .+.+.+.-+|--.+++++.+..
T Consensus 439 qaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~~t 494 (534)
T KOG2187|consen 439 QAEDLFPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVSCNPHT 494 (534)
T ss_pred chhhccchhcccCCCCCceEEEECCCcccccHHHHHHHHhccCccceEEEEcCHHH
Confidence 65543321 12335 55666554332 2344444447777777776553
No 357
>KOG3420|consensus
Probab=98.11 E-value=3.3e-06 Score=69.37 Aligned_cols=99 Identities=20% Similarity=0.237 Sum_probs=68.5
Q ss_pred CCCCCCHHHHHHHHHHhhcC--CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc--cccccc
Q psy7829 351 DNGPSSERSIAHILDLCYLN--LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST--NHIDLI 426 (511)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~--~~v~~i 426 (511)
++.|..|..++.|+....-- --+|.+++|+|||+|.+++..+.. .+..|+|+|++++..+-..+|.+. -+++++
T Consensus 24 EQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~--~~e~vlGfDIdpeALEIf~rNaeEfEvqidlL 101 (185)
T KOG3420|consen 24 EQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMP--KNESVLGFDIDPEALEIFTRNAEEFEVQIDLL 101 (185)
T ss_pred hhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcC--CCceEEeeecCHHHHHHHhhchHHhhhhhhee
Confidence 44577888888887763322 237899999999999999766543 347899999999888877666652 335777
Q ss_pred ccccccc--ccccchhhhhcccCCcEE
Q psy7829 427 ANETIEI--IPHILDLCYLNLHRGAKV 451 (511)
Q Consensus 427 ~~d~~~~--l~~~~d~i~~~l~~~~~v 451 (511)
+.+.... ....+|....|.+.|.+.
T Consensus 102 qcdildle~~~g~fDtaviNppFGTk~ 128 (185)
T KOG3420|consen 102 QCDILDLELKGGIFDTAVINPPFGTKK 128 (185)
T ss_pred eeeccchhccCCeEeeEEecCCCCccc
Confidence 7764333 235667666666655543
No 358
>KOG2352|consensus
Probab=98.09 E-value=0.00019 Score=71.73 Aligned_cols=101 Identities=17% Similarity=0.271 Sum_probs=76.5
Q ss_pred cCCCCC-EEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCc
Q psy7829 130 HLVDGA-KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPY 208 (511)
Q Consensus 130 ~~~~~~-~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 208 (511)
.+.+-. ++|-+|||.-.++..+-+-. ...++.+|+|+..++.....-.+ ..+-..+...|......++++|
T Consensus 44 ~~~p~~~~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~~------~~~~~~~~~~d~~~l~fedESF 115 (482)
T KOG2352|consen 44 YLSPSDFKILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNAK------ERPEMQMVEMDMDQLVFEDESF 115 (482)
T ss_pred hhchhhceeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhcccc------CCcceEEEEecchhccCCCcce
Confidence 345666 99999999998888776654 34599999999998887765432 2445889999988777777899
Q ss_pred cEEEecCCCCch----------------HHHHHhhcccCcEEEEEE
Q psy7829 209 DVIYYGGCVSEV----------------PSRVLNQLKKGGRILAPI 238 (511)
Q Consensus 209 D~I~~~~~~~~~----------------~~~~~~~LkpgG~l~~~~ 238 (511)
|+|+.-+.+..+ ..++.+.|+|||+++...
T Consensus 116 diVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 116 DIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred eEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 999876655322 267899999999987643
No 359
>PLN02366 spermidine synthase
Probab=98.09 E-value=1.1e-05 Score=78.18 Aligned_cols=106 Identities=15% Similarity=0.101 Sum_probs=72.7
Q ss_pred CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-------cccccccccccccccc----ccc
Q psy7829 370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-------TNHIDLIANETIEIIP----HIL 438 (511)
Q Consensus 370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-------~~~v~~i~~d~~~~l~----~~~ 438 (511)
..+...+||+||||.|..+..+++.- +-.+|+.+|+++++++.+++.+. .++++++.+|+.+.+. ..+
T Consensus 88 ~~~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~y 166 (308)
T PLN02366 88 SIPNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTY 166 (308)
T ss_pred hCCCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCC
Confidence 34678899999999999999998753 34689999999999888877653 3568888888766543 346
Q ss_pred hhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEE
Q psy7829 439 DLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG 477 (511)
Q Consensus 439 d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~ 477 (511)
|.++.+....... ...-.+-.+...+.+.|+|+|.++.
T Consensus 167 DvIi~D~~dp~~~-~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 167 DAIIVDSSDPVGP-AQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred CEEEEcCCCCCCc-hhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 6666544332100 0000122345567788999999875
No 360
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=3.8e-05 Score=67.19 Aligned_cols=114 Identities=28% Similarity=0.361 Sum_probs=88.0
Q ss_pred HHHHHHHHHHh-hcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829 118 NQIADAAENLK-LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA 196 (511)
Q Consensus 118 ~~~~~~~~~l~-~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~ 196 (511)
.+.+.++..|. ..+++|.+||=+|+.+|....+++...+ .+.++++|.|+......-..+++ -+|+-.+..
T Consensus 60 KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~-------R~Ni~PIL~ 131 (231)
T COG1889 60 KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK-------RPNIIPILE 131 (231)
T ss_pred HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh-------CCCceeeec
Confidence 46666776665 3578999999999999999999999985 89999999998876665555444 348889999
Q ss_pred cCCCCCC---CCCCccEEEecCCCCc----hHHHHHhhcccCcEEEEEEc
Q psy7829 197 DAREGYL---PEAPYDVIYYGGCVSE----VPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 197 d~~~~~~---~~~~fD~I~~~~~~~~----~~~~~~~~LkpgG~l~~~~~ 239 (511)
|+..+.. --+..|+|+.+-+-+. +..++...||+||.+++.+-
T Consensus 132 DA~~P~~Y~~~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iK 181 (231)
T COG1889 132 DARKPEKYRHLVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVIAIK 181 (231)
T ss_pred ccCCcHHhhhhcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEEEEE
Confidence 9975322 1256899999877654 23678889999999888653
No 361
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.08 E-value=1.8e-05 Score=76.59 Aligned_cols=48 Identities=23% Similarity=0.221 Sum_probs=40.9
Q ss_pred CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc
Q psy7829 373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN 421 (511)
Q Consensus 373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~ 421 (511)
.+.++||||||+|.+...++... ++.+++|+|+++..++.+++|+..+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~N 161 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISAN 161 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 56899999999998888777765 4589999999999999888887765
No 362
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.08 E-value=6.4e-06 Score=66.15 Aligned_cols=56 Identities=18% Similarity=0.434 Sum_probs=42.5
Q ss_pred EEEEeccccHHHHHHHHHh--CCCcEEEEEcCCHHHHHHHHhhccc--cccccccccccc
Q psy7829 377 VLEIGSGSGYLATLMAHLV--GPTGHVTGLEHMMDIAIESIANIST--NHIDLIANETIE 432 (511)
Q Consensus 377 vLdiG~G~G~~~~~la~~~--~~~~~v~~id~~~~~~~~~~~~~~~--~~v~~i~~d~~~ 432 (511)
|||+|||+|..+..+++.+ +|+.+++++|+++++++.++++... .+++++++|..+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~ 60 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARD 60 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTC
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhH
Confidence 7999999999999999887 4458999999999999998887742 367777777644
No 363
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.07 E-value=2.1e-05 Score=71.29 Aligned_cols=114 Identities=24% Similarity=0.366 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhc-------cCCCcCCCC
Q psy7829 117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISK-------GNKDLLDSG 189 (511)
Q Consensus 117 p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-------~~~~~~~~~ 189 (511)
|.....+++.+. +.+++.++|+|||.|......|... +-.+++|||+.+...+.|+...+. .| ....
T Consensus 28 ~~~~~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g---~~~~ 101 (205)
T PF08123_consen 28 PEFVSKILDELN--LTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYG---KRPG 101 (205)
T ss_dssp HHHHHHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCT---B---
T ss_pred HHHHHHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhh---cccc
Confidence 445566777775 7889999999999999998888776 345699999999998888754432 22 1345
Q ss_pred CeEEEEccCCCCCCC---CCCccEEEecCCCCc--h---HHHHHhhcccCcEEEE
Q psy7829 190 RVRIVEADAREGYLP---EAPYDVIYYGGCVSE--V---PSRVLNQLKKGGRILA 236 (511)
Q Consensus 190 ~v~~~~~d~~~~~~~---~~~fD~I~~~~~~~~--~---~~~~~~~LkpgG~l~~ 236 (511)
++++..+|+.+.... -..-|+|++++.+-. + +.+....||+|-+++.
T Consensus 102 ~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 102 KVELIHGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp EEEEECS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred cceeeccCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEE
Confidence 788999997642110 134699999877632 2 2456677899888764
No 364
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.07 E-value=7.1e-06 Score=73.21 Aligned_cols=140 Identities=16% Similarity=0.159 Sum_probs=91.7
Q ss_pred CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhh-----ccccccccccccc
Q psy7829 356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIAN-----ISTNHIDLIANET 430 (511)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~-----~~~~~v~~i~~d~ 430 (511)
+-+++.+-... ..++.|.+|||.++|-||.++..++... .+|+++|.++..++.|.-| +...+++++.+|+
T Consensus 119 P~~Dt~~Kv~~--V~~~~G~rVLDtC~GLGYtAi~a~~rGA--~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~ 194 (287)
T COG2521 119 PLEDTLAKVEL--VKVKRGERVLDTCTGLGYTAIEALERGA--IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDA 194 (287)
T ss_pred cHHHHHhhhhe--eccccCCEeeeeccCccHHHHHHHHcCC--cEEEEEeeCCCeEEeeccCCCCccccccccEEecccH
Confidence 33444443443 6678899999999999999999988762 5999999997776654332 3334689999998
Q ss_pred cccccc----cchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh----------HHHHHHHHHHHHhcCCCc
Q psy7829 431 IEIIPH----ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL----------EHMMDIAIESIANISTNH 496 (511)
Q Consensus 431 ~~~l~~----~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~----------~~ml~~a~~~~~~~~~~~ 496 (511)
.+.++. .||.+.-+.+.-...=.+ -+-.+=.++++.|+|||++.-+ ..+..-..+++.+.|+.+
T Consensus 195 ~e~V~~~~D~sfDaIiHDPPRfS~AgeL--YseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~ 272 (287)
T COG2521 195 YEVVKDFDDESFDAIIHDPPRFSLAGEL--YSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEV 272 (287)
T ss_pred HHHHhcCCccccceEeeCCCccchhhhH--hHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCcee
Confidence 777653 455555443322111000 1222334677889999998766 446666677788878755
Q ss_pred eEEEe
Q psy7829 497 IDLIA 501 (511)
Q Consensus 497 i~~i~ 501 (511)
+..++
T Consensus 273 v~~~~ 277 (287)
T COG2521 273 VKKVR 277 (287)
T ss_pred eeeeh
Confidence 55543
No 365
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.05 E-value=6.7e-05 Score=70.24 Aligned_cols=92 Identities=20% Similarity=0.224 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829 117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA 196 (511)
Q Consensus 117 p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~ 196 (511)
|.+...+++.|. ++++...+|.--|.|+.+..+.+.+++.++++++|.++.+++.|++.+... .+++.+++.
T Consensus 9 pVLl~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~------~~r~~~v~~ 80 (314)
T COG0275 9 PVLLNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF------DGRVTLVHG 80 (314)
T ss_pred chHHHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc------CCcEEEEeC
Confidence 447777888887 788899999999999999999999977888999999999999999998873 458999998
Q ss_pred cCCCCC-----CCCCCccEEEecCC
Q psy7829 197 DAREGY-----LPEAPYDVIYYGGC 216 (511)
Q Consensus 197 d~~~~~-----~~~~~fD~I~~~~~ 216 (511)
++.+.. ...+.+|-|+.+..
T Consensus 81 ~F~~l~~~l~~~~i~~vDGiL~DLG 105 (314)
T COG0275 81 NFANLAEALKELGIGKVDGILLDLG 105 (314)
T ss_pred cHHHHHHHHHhcCCCceeEEEEecc
Confidence 865321 11357888876633
No 366
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.05 E-value=7.6e-06 Score=79.41 Aligned_cols=60 Identities=18% Similarity=0.188 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhcC-CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc
Q psy7829 357 ERSIAHILDLCYLN-LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS 419 (511)
Q Consensus 357 ~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~ 419 (511)
...+..++...... ..++.+|||+|||+|.+++.+++.. .+|+++|+++++++.++++..
T Consensus 127 ~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~ 187 (315)
T PLN02585 127 AQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAK 187 (315)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHH
Confidence 34455555552211 2357899999999999999999753 799999999999988877654
No 367
>KOG1596|consensus
Probab=98.04 E-value=2e-05 Score=70.53 Aligned_cols=115 Identities=25% Similarity=0.272 Sum_probs=84.7
Q ss_pred HHHHHHHHHhh-cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc
Q psy7829 119 QIADAAENLKL-HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD 197 (511)
Q Consensus 119 ~~~~~~~~l~~-~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 197 (511)
+.+-++--+.+ +++||.+||=+|+++|....+++..++|.+-||++|.|+..=...-..+++ -+||-.+.-|
T Consensus 141 LAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-------RtNiiPIiED 213 (317)
T KOG1596|consen 141 LAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-------RTNIIPIIED 213 (317)
T ss_pred HHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-------cCCceeeecc
Confidence 44444443433 678999999999999999999999999999999999987554333332222 4578888889
Q ss_pred CCCCCC---CCCCccEEEecCCCCch----HHHHHhhcccCcEEEEEEcc
Q psy7829 198 AREGYL---PEAPYDVIYYGGCVSEV----PSRVLNQLKKGGRILAPIGP 240 (511)
Q Consensus 198 ~~~~~~---~~~~fD~I~~~~~~~~~----~~~~~~~LkpgG~l~~~~~~ 240 (511)
+..+.. .-+..|+||++.+-+.. .-++...||+||.+++++-.
T Consensus 214 ArhP~KYRmlVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 214 ARHPAKYRMLVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred CCCchheeeeeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEEEec
Confidence 875432 12568999998776543 35778899999999998753
No 368
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.04 E-value=7.4e-05 Score=72.41 Aligned_cols=112 Identities=13% Similarity=0.224 Sum_probs=78.6
Q ss_pred HhhcCCCCCEEEEEcCCccHHHHHHHHHhCC---CceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEE--EEccCCCC
Q psy7829 127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGP---TGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI--VEADAREG 201 (511)
Q Consensus 127 l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~--~~~d~~~~ 201 (511)
+...+.++..++|+|||+|..+..|.+.+.+ ..+++++|+|.++++.+.+++... ..+.+++ +++|..+.
T Consensus 70 Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~-----~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 70 IAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG-----NFSHVRCAGLLGTYDDG 144 (319)
T ss_pred HHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc-----cCCCeEEEEEEecHHHH
Confidence 3334667889999999999998888877632 357999999999999999998821 3455555 88887643
Q ss_pred C---CC---CCCccEEEec-CCCCc--------hHHHHHh-hcccCcEEEEEEccCCC
Q psy7829 202 Y---LP---EAPYDVIYYG-GCVSE--------VPSRVLN-QLKKGGRILAPIGPMDD 243 (511)
Q Consensus 202 ~---~~---~~~fD~I~~~-~~~~~--------~~~~~~~-~LkpgG~l~~~~~~~~~ 243 (511)
. +. .....+++.- ..+.+ +++++.+ .|+|||.|++.++....
T Consensus 145 l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~ 202 (319)
T TIGR03439 145 LAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKD 202 (319)
T ss_pred HhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence 1 11 1335666543 33422 3477888 99999999997764443
No 369
>PRK03612 spermidine synthase; Provisional
Probab=98.02 E-value=4.3e-05 Score=80.01 Aligned_cols=123 Identities=12% Similarity=0.142 Sum_probs=81.1
Q ss_pred CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc----------ccccccccccccccccc---c
Q psy7829 370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI----------STNHIDLIANETIEIIP---H 436 (511)
Q Consensus 370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~----------~~~~v~~i~~d~~~~l~---~ 436 (511)
..+++++|||||||+|..+..+++. ++..+|+++|+|+++++.++++. ..++++++.+|+.+.+. .
T Consensus 294 ~~~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~ 372 (521)
T PRK03612 294 ASARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAE 372 (521)
T ss_pred hCCCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCC
Confidence 3456789999999999999998864 23379999999999999988842 23568888888766543 4
Q ss_pred cchhhhhcccCCcEEEEEc-CCccHHHHHHHHHhCCCcEEEEh-------HHHHHHHHHHHHhcCC
Q psy7829 437 ILDLCYLNLHRGAKVLEIG-SGSGYLATLMAHLVGPTGHVTGL-------EHMMDIAIESIANIST 494 (511)
Q Consensus 437 ~~d~i~~~l~~~~~vLD~~-~g~g~~~~~l~~~l~~~g~v~~~-------~~ml~~a~~~~~~~~~ 494 (511)
.+|.+..+...... -+.. --+-.+...+.+.|+|+|.++.. ...+....+.+++.|+
T Consensus 373 ~fDvIi~D~~~~~~-~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 373 KFDVIIVDLPDPSN-PALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred CCCEEEEeCCCCCC-cchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence 56666665432210 0000 00112345667889999998763 4444556666666554
No 370
>KOG2904|consensus
Probab=98.02 E-value=2.1e-05 Score=72.02 Aligned_cols=65 Identities=20% Similarity=0.336 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHHHhh-cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc
Q psy7829 354 PSSERSIAHILDLCY-LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS 419 (511)
Q Consensus 354 ~~~~~~~~~~~~~~~-~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~ 419 (511)
|.|.+-+..++.... .....+..+||+|||||.+++.+++.. |++.|+|||.+...++.+.+|..
T Consensus 128 pETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L-~~~~v~AiD~S~~Ai~La~eN~q 193 (328)
T KOG2904|consen 128 PETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGL-PQCTVTAIDVSKAAIKLAKENAQ 193 (328)
T ss_pred ccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcC-CCceEEEEeccHHHHHHHHHHHH
Confidence 678888877776511 122356789999999999999999998 57999999999877776666544
No 371
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.01 E-value=1e-05 Score=75.76 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=45.4
Q ss_pred CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----ccccccccc
Q psy7829 371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANE 429 (511)
Q Consensus 371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d 429 (511)
..++.+|||+|||+|.++..+++.. .+|+++|+++++++.++++... .++.+..+|
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d 120 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAGLAGNITFEVGD 120 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC
Confidence 4678899999999999999998764 6799999999999888776543 356666665
No 372
>KOG1663|consensus
Probab=98.00 E-value=1.4e-05 Score=71.58 Aligned_cols=106 Identities=18% Similarity=0.315 Sum_probs=72.8
Q ss_pred HHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----cccccccccccccccccc
Q psy7829 362 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANETIEIIPHI 437 (511)
Q Consensus 362 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d~~~~l~~~ 437 (511)
.++.. .+.+-.++++||||+=|||.++.+|..+.++|+|+++|++.+.++...+-.. ...|+++++.+.+.++.+
T Consensus 63 ~fl~~-li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l 141 (237)
T KOG1663|consen 63 QFLQM-LIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDEL 141 (237)
T ss_pred HHHHH-HHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHH
Confidence 44443 3566789999999999999999999999889999999999887776654433 344788998887776543
Q ss_pred --------chhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEE
Q psy7829 438 --------LDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVT 476 (511)
Q Consensus 438 --------~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~ 476 (511)
||.+|.+-.+..++ +.-..+.+.+++||-++
T Consensus 142 ~~~~~~~tfDfaFvDadK~nY~--------~y~e~~l~Llr~GGvi~ 180 (237)
T KOG1663|consen 142 LADGESGTFDFAFVDADKDNYS--------NYYERLLRLLRVGGVIV 180 (237)
T ss_pred HhcCCCCceeEEEEccchHHHH--------HHHHHHHhhcccccEEE
Confidence 34333332222211 23355567777755443
No 373
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.00 E-value=1.3e-05 Score=76.21 Aligned_cols=48 Identities=21% Similarity=0.283 Sum_probs=37.7
Q ss_pred CCCCCEEEEEeccccH----HHHHHHHHhC----CCcEEEEEcCCHHHHHHHHhhc
Q psy7829 371 LHRGAKVLEIGSGSGY----LATLMAHLVG----PTGHVTGLEHMMDIAIESIANI 418 (511)
Q Consensus 371 ~~~~~~vLdiG~G~G~----~~~~la~~~~----~~~~v~~id~~~~~~~~~~~~~ 418 (511)
..++.+|||+|||||. +++.+++..+ ++.+|+|+|+++++++.|+++.
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~ 152 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI 152 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence 3456799999999996 5566666543 2478999999999999988764
No 374
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.99 E-value=1.6e-05 Score=76.35 Aligned_cols=95 Identities=16% Similarity=0.228 Sum_probs=68.1
Q ss_pred HHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHH---HHhhccccccccccccccccccccc
Q psy7829 362 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE---SIANISTNHIDLIANETIEIIPHIL 438 (511)
Q Consensus 362 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~---~~~~~~~~~v~~i~~d~~~~l~~~~ 438 (511)
.++....+...++++|||+++|+|.-|..+|..++..+.|++.|++...+.. +.++++..++.++..|.....+...
T Consensus 74 S~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~ 153 (283)
T PF01189_consen 74 SQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKP 153 (283)
T ss_dssp HHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHH
T ss_pred cccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccc
Confidence 3333334678899999999999999999999999778999999999766654 5667778888777666544322211
Q ss_pred hhhhhcccCCcEEEEEcC-CccHH
Q psy7829 439 DLCYLNLHRGAKVLEIGS-GSGYL 461 (511)
Q Consensus 439 d~i~~~l~~~~~vLD~~~-g~g~~ 461 (511)
.. ..+..++|..| |+|.+
T Consensus 154 ~~-----~fd~VlvDaPCSg~G~i 172 (283)
T PF01189_consen 154 ES-----KFDRVLVDAPCSGLGTI 172 (283)
T ss_dssp TT-----TEEEEEEECSCCCGGGT
T ss_pred cc-----ccchhhcCCCccchhhh
Confidence 10 23456788888 78877
No 375
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.99 E-value=4.5e-05 Score=73.05 Aligned_cols=106 Identities=12% Similarity=0.095 Sum_probs=69.3
Q ss_pred CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-------ccccccccccccccc---cccchh
Q psy7829 371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-------TNHIDLIANETIEII---PHILDL 440 (511)
Q Consensus 371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-------~~~v~~i~~d~~~~l---~~~~d~ 440 (511)
.+.+.+||+||||+|.++..+++.. +..+++++|+++++++.+++.+. .++++++.+|+.+.+ +..+|.
T Consensus 70 ~~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDv 148 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDV 148 (270)
T ss_pred CCCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccE
Confidence 3456699999999999998887654 34789999999999888877653 245667777765544 234565
Q ss_pred hhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 441 CYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 441 i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
++.+....... ....-+-.+...+.+.|+|+|.++..
T Consensus 149 Ii~D~~~~~~~-~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 149 IIVDSTDPVGP-AETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEEeCCCCCCc-ccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 55443211100 00000223445677889999998865
No 376
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.99 E-value=4.5e-05 Score=72.70 Aligned_cols=94 Identities=21% Similarity=0.247 Sum_probs=75.3
Q ss_pred ccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeE
Q psy7829 113 VMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVR 192 (511)
Q Consensus 113 ~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~ 192 (511)
.+..+.+...+++.+. +.++..|||+|+|+|.+|..+++.. .+++++|+++.+++..++++.. .++++
T Consensus 12 FL~~~~~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~-------~~~~~ 79 (262)
T PF00398_consen 12 FLVDPNIADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFAS-------NPNVE 79 (262)
T ss_dssp EEEHHHHHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTT-------CSSEE
T ss_pred eeCCHHHHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhh-------cccce
Confidence 3457788889999887 6789999999999999999999986 4799999999999999987653 45899
Q ss_pred EEEccCCCCCCCC---CCccEEEecCCCC
Q psy7829 193 IVEADAREGYLPE---APYDVIYYGGCVS 218 (511)
Q Consensus 193 ~~~~d~~~~~~~~---~~fD~I~~~~~~~ 218 (511)
++.+|+....... .....|+++.++.
T Consensus 80 vi~~D~l~~~~~~~~~~~~~~vv~NlPy~ 108 (262)
T PF00398_consen 80 VINGDFLKWDLYDLLKNQPLLVVGNLPYN 108 (262)
T ss_dssp EEES-TTTSCGGGHCSSSEEEEEEEETGT
T ss_pred eeecchhccccHHhhcCCceEEEEEeccc
Confidence 9999997633221 3456888887773
No 377
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.98 E-value=2.1e-05 Score=73.68 Aligned_cols=113 Identities=24% Similarity=0.242 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc--cccccccccccc
Q psy7829 356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN--HIDLIANETIEI 433 (511)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~--~v~~i~~d~~~~ 433 (511)
++..+..+... ....++.+|||||||+|.++..+++.. .+++++|+++++++.+.+++... +++++..+..+.
T Consensus 33 ~~~~~~~l~~~--~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 107 (233)
T PRK05134 33 NPLRLNYIREH--AGGLFGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEEL 107 (233)
T ss_pred hHHHHHHHHHh--ccCCCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHh
Confidence 33444444443 345578899999999999999888753 68999999999988877665422 344444433222
Q ss_pred c---cccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 434 I---PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 434 l---~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
. ...+|.++... ++..-.....+...+.+.++|+|.++..
T Consensus 108 ~~~~~~~fD~Ii~~~-----~l~~~~~~~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 108 AAEHPGQFDVVTCME-----MLEHVPDPASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred hhhcCCCccEEEEhh-----HhhccCCHHHHHHHHHHHcCCCcEEEEE
Confidence 1 12333332210 0111113334456667778888887654
No 378
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.95 E-value=1.4e-05 Score=70.26 Aligned_cols=59 Identities=22% Similarity=0.298 Sum_probs=47.6
Q ss_pred CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccc
Q psy7829 370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEII 434 (511)
Q Consensus 370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l 434 (511)
-+++|.+|||+|||.|.+...|.+.- +..++|+|++++.+.++.++ .+.++++|.-+.+
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~r----Gv~Viq~Dld~gL 68 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVAR----GVSVIQGDLDEGL 68 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHHc----CCCEEECCHHHhH
Confidence 46789999999999999999887754 48999999999988877665 3677777754443
No 379
>PLN02672 methionine S-methyltransferase
Probab=97.95 E-value=8.9e-06 Score=90.07 Aligned_cols=72 Identities=17% Similarity=0.227 Sum_probs=57.4
Q ss_pred CCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc-------------------cccccccccccccc
Q psy7829 374 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST-------------------NHIDLIANETIEII 434 (511)
Q Consensus 374 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~-------------------~~v~~i~~d~~~~l 434 (511)
+.+|||+|||+|.+++.+++.. +..+|+++|+++++++.+.+|... .+++++++|..+.+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 5689999999999999999887 568999999999888887777653 35788888876655
Q ss_pred cc---cchhhhhccc
Q psy7829 435 PH---ILDLCYLNLH 446 (511)
Q Consensus 435 ~~---~~d~i~~~l~ 446 (511)
.. .+|.++.|.+
T Consensus 198 ~~~~~~fDlIVSNPP 212 (1082)
T PLN02672 198 RDNNIELDRIVGCIP 212 (1082)
T ss_pred cccCCceEEEEECCC
Confidence 32 4777777654
No 380
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.94 E-value=5.5e-05 Score=71.25 Aligned_cols=48 Identities=25% Similarity=0.358 Sum_probs=36.6
Q ss_pred HHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHH
Q psy7829 362 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE 413 (511)
Q Consensus 362 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~ 413 (511)
++... +.--.|.+|||||||.||.+..++... + ..|+|||.+.-...+
T Consensus 106 rl~p~--l~~L~gk~VLDIGC~nGY~~frM~~~G-A-~~ViGiDP~~lf~~Q 153 (315)
T PF08003_consen 106 RLLPH--LPDLKGKRVLDIGCNNGYYSFRMLGRG-A-KSVIGIDPSPLFYLQ 153 (315)
T ss_pred HHHhh--hCCcCCCEEEEecCCCcHHHHHHhhcC-C-CEEEEECCChHHHHH
Confidence 44443 433479999999999999999998775 3 789999998544443
No 381
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.93 E-value=8.4e-06 Score=71.48 Aligned_cols=40 Identities=30% Similarity=0.444 Sum_probs=35.5
Q ss_pred CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHH
Q psy7829 371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE 413 (511)
Q Consensus 371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~ 413 (511)
..++.+|||+|||+|.++..+++.. .+++++|+++.++..
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRG---FEVTGVDISPQMIEK 59 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTT---SEEEEEESSHHHHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhC---CEEEEEECCHHHHhh
Confidence 6789999999999999999996653 599999999998877
No 382
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.92 E-value=1.7e-05 Score=71.15 Aligned_cols=92 Identities=25% Similarity=0.364 Sum_probs=61.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC--------CC-
Q psy7829 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG--------YL- 203 (511)
Q Consensus 133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~--------~~- 203 (511)
.+.+|||+||++|+++..+.++.++.++|+|+|+.+. . ...++.++++|..+. ..
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~-------~~~~~~~i~~d~~~~~~~~~i~~~~~ 86 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------D-------PLQNVSFIQGDITNPENIKDIRKLLP 86 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------G-------S-TTEEBTTGGGEEEEHSHHGGGSHG
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc---------c-------cccceeeeecccchhhHHHhhhhhcc
Confidence 3489999999999999999998766789999999876 1 123566666665421 11
Q ss_pred -CCCCccEEEecCCCCc--------h---------HHHHHhhcccCcEEEEEEcc
Q psy7829 204 -PEAPYDVIYYGGCVSE--------V---------PSRVLNQLKKGGRILAPIGP 240 (511)
Q Consensus 204 -~~~~fD~I~~~~~~~~--------~---------~~~~~~~LkpgG~l~~~~~~ 240 (511)
....+|+|+++..... . +.-+.+.|+|||.+++-+..
T Consensus 87 ~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 87 ESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp TTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred ccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 1268999999984311 0 13445789999999987654
No 383
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.92 E-value=3.2e-05 Score=73.89 Aligned_cols=92 Identities=20% Similarity=0.252 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829 117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA 196 (511)
Q Consensus 117 p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~ 196 (511)
|-+...+++.|. ..++..++|.--|.|+.+..+.+.++ .++++|+|.++.+++.|++++.. ..+++.++++
T Consensus 6 PVll~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~-~~~li~~DrD~~a~~~a~~~l~~------~~~r~~~~~~ 76 (310)
T PF01795_consen 6 PVLLKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLP-NGRLIGIDRDPEALERAKERLKK------FDDRFIFIHG 76 (310)
T ss_dssp -TTHHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-T-T-EEEEEES-HHHHHHHHCCTCC------CCTTEEEEES
T ss_pred cccHHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCC-CCeEEEecCCHHHHHHHHHHHhh------ccceEEEEec
Confidence 457778888887 78889999999999999999999984 59999999999999999988775 2568999999
Q ss_pred cCCCC------CCCCCCccEEEecCCC
Q psy7829 197 DAREG------YLPEAPYDVIYYGGCV 217 (511)
Q Consensus 197 d~~~~------~~~~~~fD~I~~~~~~ 217 (511)
++.+. ......+|.|+.+..+
T Consensus 77 ~F~~l~~~l~~~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 77 NFSNLDEYLKELNGINKVDGILFDLGV 103 (310)
T ss_dssp -GGGHHHHHHHTTTTS-EEEEEEE-S-
T ss_pred cHHHHHHHHHHccCCCccCEEEEcccc
Confidence 87631 1123579999887554
No 384
>KOG3010|consensus
Probab=97.90 E-value=3.7e-05 Score=69.30 Aligned_cols=100 Identities=12% Similarity=0.116 Sum_probs=60.8
Q ss_pred CCCCCC-EEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc--cc--cccccccccccc--cccchhhh
Q psy7829 370 NLHRGA-KVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST--NH--IDLIANETIEII--PHILDLCY 442 (511)
Q Consensus 370 ~~~~~~-~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~--~~--v~~i~~d~~~~l--~~~~d~i~ 442 (511)
...++. .++|+|||+|..++.+|..+ .+|+|+|++++|++.+.+.... .+ ..+...+..+++ +...|++.
T Consensus 29 ~~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~ 105 (261)
T KOG3010|consen 29 SRTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLIT 105 (261)
T ss_pred hhCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeeh
Confidence 345555 89999999998899999987 7999999999999987765442 11 222333333333 33333332
Q ss_pred hcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 443 ~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
....-++ |..-.+-..+.+.|++.|.++++
T Consensus 106 ~Aqa~HW------Fdle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 106 AAQAVHW------FDLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred hhhhHHh------hchHHHHHHHHHHcCCCCCEEEE
Confidence 2211111 11223344556777777866665
No 385
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.90 E-value=3e-05 Score=69.78 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=48.1
Q ss_pred CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cc-ccccccccccccc
Q psy7829 372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TN-HIDLIANETIEII 434 (511)
Q Consensus 372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~-~v~~i~~d~~~~l 434 (511)
-++.+|||++||+|.+++.++.+.. .+|+++|.+...++.+++|+. .. +++++++|..+.+
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l 112 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRAL 112 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHH
Confidence 4689999999999999999998763 589999999877776666654 32 5678888875543
No 386
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.86 E-value=5.5e-05 Score=69.43 Aligned_cols=113 Identities=14% Similarity=0.110 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---------------
Q psy7829 355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS--------------- 419 (511)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~--------------- 419 (511)
.++..+..... +...++.+||+.|||.|..+.+||... -+|+|+|+++..++++.+..+
T Consensus 28 pnp~L~~~~~~---l~~~~~~rvLvPgCGkg~D~~~LA~~G---~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~ 101 (226)
T PRK13256 28 PNEFLVKHFSK---LNINDSSVCLIPMCGCSIDMLFFLSKG---VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYK 101 (226)
T ss_pred CCHHHHHHHHh---cCCCCCCeEEEeCCCChHHHHHHHhCC---CcEEEEecCHHHHHHHHHHcCCCcceecccccceec
Confidence 35555555433 455578899999999999999999765 789999999988888655321
Q ss_pred ccccccccccccccccccchhhhhcccCCcEEEEEcCC-------ccHHHHHHHHHhCCCcEEEEh
Q psy7829 420 TNHIDLIANETIEIIPHILDLCYLNLHRGAKVLEIGSG-------SGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 420 ~~~v~~i~~d~~~~l~~~~d~i~~~l~~~~~vLD~~~g-------~g~~~~~l~~~l~~~g~v~~~ 478 (511)
..+++++++|..+.-+.. ....+-+.|.|-+|= -...+..+.+.++|+|+++++
T Consensus 102 ~~~i~~~~gD~f~l~~~~-----~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 102 GDDIEIYVADIFNLPKIA-----NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred cCceEEEEccCcCCCccc-----cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 234566666655432100 001112335555431 112355677788999998887
No 387
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.86 E-value=0.00014 Score=67.11 Aligned_cols=49 Identities=20% Similarity=0.275 Sum_probs=38.0
Q ss_pred HHHHHHhhcCC-CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHH
Q psy7829 361 AHILDLCYLNL-HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE 413 (511)
Q Consensus 361 ~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~ 413 (511)
..++.. +.+ .++.+|||+|||||+++..+++.. . .+|+|+|++.++...
T Consensus 64 ~~~l~~--~~~~~~~~~vlDiG~gtG~~t~~l~~~g-a-~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 64 KEALEE--FNIDVKNKIVLDVGSSTGGFTDCALQKG-A-KEVYGVDVGYNQLAE 113 (228)
T ss_pred HHHHHh--cCCCCCCCEEEEcccCCCHHHHHHHHcC-C-CEEEEEeCCHHHHHH
Confidence 344444 444 368899999999999999999873 2 789999999866654
No 388
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.85 E-value=5.2e-05 Score=68.76 Aligned_cols=76 Identities=26% Similarity=0.305 Sum_probs=58.1
Q ss_pred EEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCC
Q psy7829 137 VLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGC 216 (511)
Q Consensus 137 vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~ 216 (511)
|.||||-.|++.+.|.+.. ...+++++|+++.-++.|+++++..+ ..++++++.+|..+...+....|.|++.++
T Consensus 1 vaDIGtDHgyLpi~L~~~~-~~~~~ia~DI~~gpL~~A~~~i~~~~----l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG-KAPKAIAVDINPGPLEKAKENIAKYG----LEDRIEVRLGDGLEVLKPGEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTT-----TTTEEEEE-SGGGG--GGG---EEEEEEE
T ss_pred CceeccchhHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcC----CcccEEEEECCcccccCCCCCCCEEEEecC
Confidence 6899999999999999985 66789999999999999999999986 467899999998876655344788877655
Q ss_pred C
Q psy7829 217 V 217 (511)
Q Consensus 217 ~ 217 (511)
-
T Consensus 76 G 76 (205)
T PF04816_consen 76 G 76 (205)
T ss_dssp -
T ss_pred C
Confidence 4
No 389
>KOG3045|consensus
Probab=97.84 E-value=7.4e-05 Score=67.84 Aligned_cols=91 Identities=18% Similarity=0.231 Sum_probs=67.1
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCC
Q psy7829 120 IADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAR 199 (511)
Q Consensus 120 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 199 (511)
+..+++.+.. ......|-|+|||-+.++. . ..-+|+.+|+.+ .|-+++.+|+.
T Consensus 168 ld~ii~~ik~-r~~~~vIaD~GCGEakiA~---~---~~~kV~SfDL~a--------------------~~~~V~~cDm~ 220 (325)
T KOG3045|consen 168 LDVIIRKIKR-RPKNIVIADFGCGEAKIAS---S---ERHKVHSFDLVA--------------------VNERVIACDMR 220 (325)
T ss_pred HHHHHHHHHh-CcCceEEEecccchhhhhh---c---cccceeeeeeec--------------------CCCceeecccc
Confidence 3456666652 2345689999999998775 1 233599999842 14567889998
Q ss_pred CCCCCCCCccEEEecCCC-----CchHHHHHhhcccCcEEEEE
Q psy7829 200 EGYLPEAPYDVIYYGGCV-----SEVPSRVLNQLKKGGRILAP 237 (511)
Q Consensus 200 ~~~~~~~~fD~I~~~~~~-----~~~~~~~~~~LkpgG~l~~~ 237 (511)
..+.++++.|++++..++ ..+..++.+.|+|||.+++.
T Consensus 221 ~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IA 263 (325)
T KOG3045|consen 221 NVPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIA 263 (325)
T ss_pred CCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEE
Confidence 877778999998876554 34568999999999999985
No 390
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.82 E-value=2.6e-06 Score=69.14 Aligned_cols=94 Identities=30% Similarity=0.452 Sum_probs=38.4
Q ss_pred EEEcCCccHHHHHHHHHhCCCc--eEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC--CCCCccEEEe
Q psy7829 138 LDLGSGSGYQTCVFAHMVGPTG--KVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL--PEAPYDVIYY 213 (511)
Q Consensus 138 LDiG~G~G~~~~~la~~~~~~~--~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD~I~~ 213 (511)
||+|+..|..+..+++.+.+.. +++++|..+. .+.+++.+++.+ ...+++++.+|..+... ..++||+|++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~----~~~~~~~~~g~s~~~l~~~~~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAG----LSDRVEFIQGDSPDFLPSLPDGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS-------------GG----G-BTEEEEES-THHHHHHHHH--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcC----CCCeEEEEEcCcHHHHHHcCCCCEEEEEE
Confidence 6999999999999998875544 7999999985 333344443322 34579999999864221 1368999999
Q ss_pred cCCC--Cc---hHHHHHhhcccCcEEEE
Q psy7829 214 GGCV--SE---VPSRVLNQLKKGGRILA 236 (511)
Q Consensus 214 ~~~~--~~---~~~~~~~~LkpgG~l~~ 236 (511)
+..= +. -...+.+.|+|||.+++
T Consensus 76 Dg~H~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 76 DGDHSYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp ES---HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 9752 22 23678889999999886
No 391
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.81 E-value=0.00026 Score=60.57 Aligned_cols=102 Identities=24% Similarity=0.407 Sum_probs=69.0
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCc
Q psy7829 132 VDGAKVLDLGSGSGYQTCVFAHMV---GPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPY 208 (511)
Q Consensus 132 ~~~~~vLDiG~G~G~~~~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 208 (511)
.+...|+|+|||.|+++..++..+ .+..+|+++|.++..++.++++.+..+.. ...++++..++...... ....
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~ 100 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSD--LEKRLSFIQGDIADESS-SDPP 100 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcch--hhccchhhccchhhhcc-cCCC
Confidence 567899999999999999999933 35679999999999999999988775310 12456677666543221 3556
Q ss_pred cEEEecCCCCchHHH-HHhhcccCcEEEE
Q psy7829 209 DVIYYGGCVSEVPSR-VLNQLKKGGRILA 236 (511)
Q Consensus 209 D~I~~~~~~~~~~~~-~~~~LkpgG~l~~ 236 (511)
++++.-..+-.+... +...++|+-..++
T Consensus 101 ~~~vgLHaCG~Ls~~~l~~~~~~~~~~l~ 129 (141)
T PF13679_consen 101 DILVGLHACGDLSDRALRLFIRPNARFLV 129 (141)
T ss_pred eEEEEeecccchHHHHHHHHHHcCCCEEE
Confidence 777766555544432 2333346555544
No 392
>KOG2198|consensus
Probab=97.80 E-value=0.00014 Score=69.92 Aligned_cols=104 Identities=21% Similarity=0.251 Sum_probs=77.4
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCC---CceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC----
Q psy7829 130 HLVDGAKVLDLGSGSGYQTCVFAHMVGP---TGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY---- 202 (511)
Q Consensus 130 ~~~~~~~vLDiG~G~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---- 202 (511)
.++|+.+|||+|+.+|.-++.+.+...+ .+.|++-|.++..+.......... ..+++.+...|+...+
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l-----~~~~~~v~~~~~~~~p~~~~ 226 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL-----PSPNLLVTNHDASLFPNIYL 226 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc-----CCcceeeecccceecccccc
Confidence 4789999999999999999999887743 347999999999888888777553 3445555555554211
Q ss_pred ---C--CCCCccEEEecCCCC-----------------------------chHHHHHhhcccCcEEEEEE
Q psy7829 203 ---L--PEAPYDVIYYGGCVS-----------------------------EVPSRVLNQLKKGGRILAPI 238 (511)
Q Consensus 203 ---~--~~~~fD~I~~~~~~~-----------------------------~~~~~~~~~LkpgG~l~~~~ 238 (511)
. ....||.|+++.+|. .++.+..++||+||++|.++
T Consensus 227 ~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198|consen 227 KDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred ccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence 1 224699999998871 12356789999999999874
No 393
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.80 E-value=3.5e-05 Score=77.04 Aligned_cols=106 Identities=18% Similarity=0.188 Sum_probs=64.3
Q ss_pred HHHHHHHHHhhcCCCC--CEEEEEcCCccHHHHHHHHHhCCCceEEEE-----eCCHHHHHHHHHHHhccCCCcCCCCCe
Q psy7829 119 QIADAAENLKLHLVDG--AKVLDLGSGSGYQTCVFAHMVGPTGKVIGV-----EHIPELIEASLRNISKGNKDLLDSGRV 191 (511)
Q Consensus 119 ~~~~~~~~l~~~~~~~--~~vLDiG~G~G~~~~~la~~~~~~~~v~~i-----D~~~~~~~~a~~~~~~~~~~~~~~~~v 191 (511)
....+.+.+......+ ..+||+|||+|.++..|..+. |+.+ |..+..++.|-++ +.+-+
T Consensus 101 Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~-----V~t~s~a~~d~~~~qvqfaleR---------Gvpa~ 166 (506)
T PF03141_consen 101 YIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERN-----VTTMSFAPNDEHEAQVQFALER---------GVPAM 166 (506)
T ss_pred HHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCC-----ceEEEcccccCCchhhhhhhhc---------Ccchh
Confidence 4444555554211223 258999999999999998863 4444 4445556665544 12111
Q ss_pred EEEEccCCCCCCCCCCccEEEecCCCC-c------hHHHHHhhcccCcEEEEEEc
Q psy7829 192 RIVEADAREGYLPEAPYDVIYYGGCVS-E------VPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 192 ~~~~~d~~~~~~~~~~fD~I~~~~~~~-~------~~~~~~~~LkpgG~l~~~~~ 239 (511)
--+.+.- ..+.+.+.||+|+|....- + ++-++-++|+|||+++.+-.
T Consensus 167 ~~~~~s~-rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 167 IGVLGSQ-RLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred hhhhccc-cccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCC
Confidence 1111221 2344568999999986652 1 23578999999999998643
No 394
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.80 E-value=0.00023 Score=67.10 Aligned_cols=100 Identities=24% Similarity=0.356 Sum_probs=63.9
Q ss_pred CCEEEEEcCCcc-HHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHh-ccCCCcCCCCCeEEEEccCCCCCCCCCCccEE
Q psy7829 134 GAKVLDLGSGSG-YQTCVFAHMVGPTGKVIGVEHIPELIEASLRNIS-KGNKDLLDSGRVRIVEADAREGYLPEAPYDVI 211 (511)
Q Consensus 134 ~~~vLDiG~G~G-~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 211 (511)
..+|+=||||+= ..++.+++..++...|+++|+++++++.+++-.. ..+ ...++.|+.+|.......-..||+|
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~----L~~~m~f~~~d~~~~~~dl~~~DvV 196 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG----LSKRMSFITADVLDVTYDLKEYDVV 196 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H----H-SSEEEEES-GGGG-GG----SEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc----ccCCeEEEecchhccccccccCCEE
Confidence 359999999974 5566777766677889999999999999998877 322 3567999999987543333679999
Q ss_pred EecCCCC-------chHHHHHhhcccCcEEEEE
Q psy7829 212 YYGGCVS-------EVPSRVLNQLKKGGRILAP 237 (511)
Q Consensus 212 ~~~~~~~-------~~~~~~~~~LkpgG~l~~~ 237 (511)
+...-.. .+...+.+.++||..+++-
T Consensus 197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp EE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred EEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 9876553 4678999999999999873
No 395
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.79 E-value=4.9e-05 Score=67.75 Aligned_cols=46 Identities=22% Similarity=0.147 Sum_probs=35.4
Q ss_pred cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhh
Q psy7829 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIAN 417 (511)
Q Consensus 369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~ 417 (511)
...-++.++||+|||.|..++.||+.. -.|+++|+++..+++..+.
T Consensus 26 ~~~~~~g~~LDlgcG~GRNalyLA~~G---~~VtAvD~s~~al~~l~~~ 71 (192)
T PF03848_consen 26 VPLLKPGKALDLGCGEGRNALYLASQG---FDVTAVDISPVALEKLQRL 71 (192)
T ss_dssp CTTS-SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHH
T ss_pred HhhcCCCcEEEcCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHH
Confidence 445567899999999999999999875 7999999998777654443
No 396
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.79 E-value=3.7e-05 Score=71.60 Aligned_cols=98 Identities=21% Similarity=0.268 Sum_probs=59.7
Q ss_pred CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc---cccccccccccccc---ccchhhhhccc
Q psy7829 373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN---HIDLIANETIEIIP---HILDLCYLNLH 446 (511)
Q Consensus 373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~---~v~~i~~d~~~~l~---~~~d~i~~~l~ 446 (511)
.+.+|||+|||+|.++..+++.. .+++++|+++.++..+.+++... ++.+...+..+... ..+|.++...
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~- 120 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCME- 120 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehh-
Confidence 47899999999999999888754 67999999999988877765432 35555554333221 2233322210
Q ss_pred CCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 447 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 447 ~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
++.....+-.+...+.+.++|+|.++..
T Consensus 121 ----~l~~~~~~~~~l~~~~~~L~~gG~l~i~ 148 (224)
T TIGR01983 121 ----VLEHVPDPQAFIRACAQLLKPGGILFFS 148 (224)
T ss_pred ----HHHhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 0111122333445566667777776543
No 397
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.78 E-value=0.00012 Score=58.32 Aligned_cols=55 Identities=24% Similarity=0.401 Sum_probs=40.6
Q ss_pred EEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHh---hccccccccccccccc
Q psy7829 376 KVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA---NISTNHIDLIANETIE 432 (511)
Q Consensus 376 ~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~---~~~~~~v~~i~~d~~~ 432 (511)
+|+|+|||+|..+..+++ . +..+++++|.+++....+.+ .....++.++..+..+
T Consensus 1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEE 58 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhh
Confidence 489999999999999887 2 45899999999887776652 2234456666655443
No 398
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.76 E-value=0.0001 Score=70.86 Aligned_cols=121 Identities=16% Similarity=0.194 Sum_probs=81.4
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccc---cccc-
Q psy7829 353 GPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHID---LIAN- 428 (511)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~---~i~~- 428 (511)
+...|+.+..+..+ ..+++|+.|||==||||.+.+.+.... .+++|.|++..|++.++.|++.-+++ +...
T Consensus 179 ~s~~P~lAR~mVNL--a~v~~G~~vlDPFcGTGgiLiEagl~G---~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~ 253 (347)
T COG1041 179 GSMDPRLARAMVNL--ARVKRGELVLDPFCGTGGILIEAGLMG---ARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVL 253 (347)
T ss_pred CCcCHHHHHHHHHH--hccccCCEeecCcCCccHHHHhhhhcC---ceEeecchHHHHHhhhhhhhhhhCcCceeEEEec
Confidence 45677888777777 788999999999999999999988554 89999999999999999998854432 3322
Q ss_pred ccccc-cc-ccchhhhhcccCCcEEEEEcCC----ccHHHHHHHHHhCCCcEEEEh
Q psy7829 429 ETIEI-IP-HILDLCYLNLHRGAKVLEIGSG----SGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 429 d~~~~-l~-~~~d~i~~~l~~~~~vLD~~~g----~g~~~~~l~~~l~~~g~v~~~ 478 (511)
|+... ++ ..+|.+..+.+-|...---+.+ .-.+...+.+.|+++|.++-.
T Consensus 254 Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~ 309 (347)
T COG1041 254 DATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA 309 (347)
T ss_pred ccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence 33221 22 2366666665544322101111 112244566778888877665
No 399
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.75 E-value=0.00018 Score=64.27 Aligned_cols=82 Identities=27% Similarity=0.392 Sum_probs=71.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV 210 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 210 (511)
++.+.++.||||-.+++.+.+.+.. +...+++.|+++..++.|.+++.+++ ..+++++.++|.......+..+|.
T Consensus 14 V~~~~~iaDIGsDHAYLp~~Lv~~~-~~~~~va~eV~~gpl~~a~~~v~~~~----l~~~i~vr~~dgl~~l~~~d~~d~ 88 (226)
T COG2384 14 VKQGARIADIGSDHAYLPIYLVKNN-PASTAVAGEVVPGPLESAIRNVKKNN----LSERIDVRLGDGLAVLELEDEIDV 88 (226)
T ss_pred HHcCCceeeccCchhHhHHHHHhcC-CcceEEEeecccCHHHHHHHHHHhcC----CcceEEEeccCCccccCccCCcCE
Confidence 4567779999999999999999985 78899999999999999999999987 677899999999776666568999
Q ss_pred EEecCCC
Q psy7829 211 IYYGGCV 217 (511)
Q Consensus 211 I~~~~~~ 217 (511)
|++.++-
T Consensus 89 ivIAGMG 95 (226)
T COG2384 89 IVIAGMG 95 (226)
T ss_pred EEEeCCc
Confidence 9887654
No 400
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.74 E-value=7.5e-05 Score=65.10 Aligned_cols=93 Identities=23% Similarity=0.284 Sum_probs=73.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEE
Q psy7829 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIY 212 (511)
Q Consensus 133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~ 212 (511)
.|.+|||+|+|+|..++..++.. ...|++.|+.+.....++-|++.+|. ++.+...|... ....||+|+
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~angv------~i~~~~~d~~g---~~~~~Dl~L 147 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANGV------SILFTHADLIG---SPPAFDLLL 147 (218)
T ss_pred ccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhccc------eeEEeeccccC---CCcceeEEE
Confidence 68999999999999999988875 45799999999999999999888753 68888888754 336799999
Q ss_pred ecCCCCc-----hHHHHHhhcccCcEEEE
Q psy7829 213 YGGCVSE-----VPSRVLNQLKKGGRILA 236 (511)
Q Consensus 213 ~~~~~~~-----~~~~~~~~LkpgG~l~~ 236 (511)
.+..+.. -+-.++..|+..|..++
T Consensus 148 agDlfy~~~~a~~l~~~~~~l~~~g~~vl 176 (218)
T COG3897 148 AGDLFYNHTEADRLIPWKDRLAEAGAAVL 176 (218)
T ss_pred eeceecCchHHHHHHHHHHHHHhCCCEEE
Confidence 8776632 11237777888887777
No 401
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.74 E-value=6.9e-05 Score=71.40 Aligned_cols=74 Identities=24% Similarity=0.336 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-ccccccccccccccc
Q psy7829 356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-TNHIDLIANETIEII 434 (511)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-~~~v~~i~~d~~~~l 434 (511)
.+..+.+++.. +.+.+++.|||||+|+|.+|..+++.. .+|+++|++..+++.-.+.+. .++++++++|..++-
T Consensus 15 ~~~~~~~Iv~~--~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~ 89 (262)
T PF00398_consen 15 DPNIADKIVDA--LDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWD 89 (262)
T ss_dssp HHHHHHHHHHH--HTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSC
T ss_pred CHHHHHHHHHh--cCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhhcccceeeecchhccc
Confidence 35777788887 677799999999999999999999887 899999999999988877765 788999999977643
No 402
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.73 E-value=7.5e-05 Score=66.61 Aligned_cols=96 Identities=21% Similarity=0.179 Sum_probs=63.0
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcE---------EEEEcCCHHHHHHHHhhccccc
Q psy7829 352 NGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGH---------VTGLEHMMDIAIESIANISTNH 422 (511)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~---------v~~id~~~~~~~~~~~~~~~~~ 422 (511)
.++..+..++.++.+ ...++++.|||--||+|.+.+..|... .+.. ++|+|++.++++.+++|+...+
T Consensus 9 ~a~L~~~lA~~ll~l--a~~~~~~~vlDP~CGsGtiliEaa~~~-~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag 85 (179)
T PF01170_consen 9 PAPLRPTLAAALLNL--AGWRPGDVVLDPFCGSGTILIEAALMG-ANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG 85 (179)
T ss_dssp STSS-HHHHHHHHHH--TT--TTS-EEETT-TTSHHHHHHHHHH-TTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHH--hCCCCCCEEeecCCCCCHHHHHHHHHh-hCcccccccccccEEecCCCHHHHHHHHHHHHhcc
Confidence 346677777777777 778899999999999999999998876 3344 8999999999988888776333
Q ss_pred ----cccccccccccc--cccchhhhhcccCCcE
Q psy7829 423 ----IDLIANETIEII--PHILDLCYLNLHRGAK 450 (511)
Q Consensus 423 ----v~~i~~d~~~~l--~~~~d~i~~~l~~~~~ 450 (511)
+++.+.|..+.. +..++.+..|++-|.+
T Consensus 86 ~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r 119 (179)
T PF01170_consen 86 VEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRR 119 (179)
T ss_dssp -CGGEEEEE--GGGGGGTTSBSCEEEEE--STTS
T ss_pred cCCceEEEecchhhcccccCCCCEEEECcchhhh
Confidence 456666654433 2345666666555543
No 403
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.73 E-value=0.00022 Score=68.01 Aligned_cols=108 Identities=19% Similarity=0.219 Sum_probs=81.6
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH--HhccCCCcCCCCCeEEEEccCCCCCC-CCCCc
Q psy7829 132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN--ISKGNKDLLDSGRVRIVEADAREGYL-PEAPY 208 (511)
Q Consensus 132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~--~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~f 208 (511)
+...+||-+|.|.|.....+.+. ....+++-+|++|.|++.++++ +...+.+.+..++++++..|+.+-.. ....|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 44568999999999999998875 2367999999999999999944 33333333567899999999875322 23689
Q ss_pred cEEEecCCCCch-----------HHHHHhhcccCcEEEEEEcc
Q psy7829 209 DVIYYGGCVSEV-----------PSRVLNQLKKGGRILAPIGP 240 (511)
Q Consensus 209 D~I~~~~~~~~~-----------~~~~~~~LkpgG~l~~~~~~ 240 (511)
|.|+.+.+-+.- ...+.+.|+++|.+++--+.
T Consensus 367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags 409 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGS 409 (508)
T ss_pred cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCC
Confidence 999998665332 25678899999999986543
No 404
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.72 E-value=2.9e-05 Score=67.16 Aligned_cols=68 Identities=19% Similarity=0.285 Sum_probs=48.4
Q ss_pred CEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----cccccccccccccccccc-----chhhhhcc
Q psy7829 375 AKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANETIEIIPHI-----LDLCYLNL 445 (511)
Q Consensus 375 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d~~~~l~~~-----~d~i~~~l 445 (511)
..|+|+.||.|..++.+|+.+ .+|++||+++..++.++.|.. ..+|+++++|..+.+... +|.++...
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 369999999999999999887 799999999877776666654 457999999977765432 46666544
No 405
>PRK04148 hypothetical protein; Provisional
Probab=97.71 E-value=0.00016 Score=60.26 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=42.1
Q ss_pred cCCCCCCEEEEEeccccH-HHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccccccccc
Q psy7829 369 LNLHRGAKVLEIGSGSGY-LATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETI 431 (511)
Q Consensus 369 ~~~~~~~~vLdiG~G~G~-~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~ 431 (511)
+....+.+|||||||+|. .+..|++. | ..|+++|++++.++.+.++. ++++.+|..
T Consensus 12 ~~~~~~~kileIG~GfG~~vA~~L~~~-G--~~ViaIDi~~~aV~~a~~~~----~~~v~dDlf 68 (134)
T PRK04148 12 YEKGKNKKIVELGIGFYFKVAKKLKES-G--FDVIVIDINEKAVEKAKKLG----LNAFVDDLF 68 (134)
T ss_pred cccccCCEEEEEEecCCHHHHHHHHHC-C--CEEEEEECCHHHHHHHHHhC----CeEEECcCC
Confidence 344467899999999997 88888754 3 79999999999888776653 455555543
No 406
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.71 E-value=0.00017 Score=71.60 Aligned_cols=132 Identities=18% Similarity=0.173 Sum_probs=92.7
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccc-----cccccccc
Q psy7829 357 ERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHI-----DLIANETI 431 (511)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v-----~~i~~d~~ 431 (511)
.++..+.+.- .++ |++|||+-|-||.+++.+|.... .+|++||.+...+..+.+|+..+++ .++++|..
T Consensus 205 qR~~R~~l~~---~~~-GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf 278 (393)
T COG1092 205 QRDNRRALGE---LAA-GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVF 278 (393)
T ss_pred hHHHHHHHhh---hcc-CCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHH
Confidence 3555555543 334 99999999999999999986542 5999999999888888888887664 68899988
Q ss_pred cccc------ccchhhhhcccC---CcEE-EEEcCCccHHHHHHHHHhCCCcEEEEh--------HHHHHHHHHHHHhcC
Q psy7829 432 EIIP------HILDLCYLNLHR---GAKV-LEIGSGSGYLATLMAHLVGPTGHVTGL--------EHMMDIAIESIANIS 493 (511)
Q Consensus 432 ~~l~------~~~d~i~~~l~~---~~~v-LD~~~g~g~~~~~l~~~l~~~g~v~~~--------~~ml~~a~~~~~~~~ 493 (511)
+++. ..+|.++.+++. +... -++.-+-..+.....+.|+|+|.++.+ +.+++...+.+...+
T Consensus 279 ~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~ 358 (393)
T COG1092 279 KWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAG 358 (393)
T ss_pred HHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcC
Confidence 8764 257777776542 1122 222333444555667788999998876 566666666666655
Q ss_pred C
Q psy7829 494 T 494 (511)
Q Consensus 494 ~ 494 (511)
.
T Consensus 359 ~ 359 (393)
T COG1092 359 R 359 (393)
T ss_pred C
Confidence 4
No 407
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.70 E-value=4e-05 Score=68.33 Aligned_cols=62 Identities=15% Similarity=0.249 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc
Q psy7829 354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST 420 (511)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~ 420 (511)
-..|...+.++.. +...+-.++||+|||||-.+..+-... .+++|+|+|..|++++.++-.+
T Consensus 108 Y~vP~~l~emI~~--~~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eKg~Y 169 (287)
T COG4976 108 YSVPELLAEMIGK--ADLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEKGLY 169 (287)
T ss_pred CccHHHHHHHHHh--ccCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhccch
Confidence 3577888888887 666678899999999999999987776 7999999999999998877543
No 408
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.69 E-value=6.2e-05 Score=68.37 Aligned_cols=54 Identities=24% Similarity=0.406 Sum_probs=42.1
Q ss_pred CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccc
Q psy7829 371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANET 430 (511)
Q Consensus 371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~ 430 (511)
++++.+|||+|||+|.++..+++..+ ..++++|+++++++.+.++ +++++.++.
T Consensus 11 i~~~~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~~----~~~~~~~d~ 64 (194)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVAR----GVNVIQGDL 64 (194)
T ss_pred cCCCCEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHHc----CCeEEEEEh
Confidence 35788999999999999998886643 6789999999988877542 355665554
No 409
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.68 E-value=0.00047 Score=58.57 Aligned_cols=75 Identities=19% Similarity=0.291 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccc
Q psy7829 354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIE 432 (511)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~ 432 (511)
|++...+++|... .+.+.|.-|||+|.|||.+|..+.+..-+...+++||.+.+.+..-.+... .+.++++|+..
T Consensus 31 PsSs~lA~~M~s~--I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p--~~~ii~gda~~ 105 (194)
T COG3963 31 PSSSILARKMASV--IDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP--GVNIINGDAFD 105 (194)
T ss_pred CCcHHHHHHHHhc--cCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC--Cccccccchhh
Confidence 5577888888876 888899999999999999998877766567899999999999987766654 45588887654
No 410
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.68 E-value=8e-05 Score=64.20 Aligned_cols=92 Identities=27% Similarity=0.296 Sum_probs=72.1
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEe
Q psy7829 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYY 213 (511)
Q Consensus 134 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~ 213 (511)
.+.+.|+|+|||.++...|+.. -+|++++.+|.....|++|+.-. +..|++++.+|+....+ ...|+|+|
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~-----g~~n~evv~gDA~~y~f--e~ADvvic 102 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVP-----GDVNWEVVVGDARDYDF--ENADVVIC 102 (252)
T ss_pred hhceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCC-----CCcceEEEecccccccc--cccceeHH
Confidence 3679999999999999888874 36999999999999999998664 46789999999986433 45688877
Q ss_pred cCCC--------CchHHHHHhhcccCcEEE
Q psy7829 214 GGCV--------SEVPSRVLNQLKKGGRIL 235 (511)
Q Consensus 214 ~~~~--------~~~~~~~~~~LkpgG~l~ 235 (511)
-.-- -.+...+.+.||-.+.++
T Consensus 103 EmlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 103 EMLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 4221 123367778899998885
No 411
>KOG1709|consensus
Probab=97.68 E-value=0.0007 Score=59.94 Aligned_cols=101 Identities=23% Similarity=0.307 Sum_probs=74.1
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC--CCCCCcc
Q psy7829 132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY--LPEAPYD 209 (511)
Q Consensus 132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD 209 (511)
.+|.+||+||-|-|.....+-++ .|.. =+.||.+++.++.-++..-. ..+||.+..+-.++.. .+++.||
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~-~p~~-H~IiE~hp~V~krmr~~gw~------ek~nViil~g~WeDvl~~L~d~~FD 171 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA-PPDE-HWIIEAHPDVLKRMRDWGWR------EKENVIILEGRWEDVLNTLPDKHFD 171 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc-CCcc-eEEEecCHHHHHHHHhcccc------cccceEEEecchHhhhccccccCcc
Confidence 57999999999999988887776 3544 45689999999887776433 4568888887655322 2357799
Q ss_pred EEEecCCC------CchHHHHHhhcccCcEEEEEEcc
Q psy7829 210 VIYYGGCV------SEVPSRVLNQLKKGGRILAPIGP 240 (511)
Q Consensus 210 ~I~~~~~~------~~~~~~~~~~LkpgG~l~~~~~~ 240 (511)
-|+.+.-- .++.+.+.++|||+|.+-+--+.
T Consensus 172 GI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~ 208 (271)
T KOG1709|consen 172 GIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGL 208 (271)
T ss_pred eeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCc
Confidence 99987542 23457889999999998774443
No 412
>KOG1271|consensus
Probab=97.67 E-value=0.00018 Score=61.84 Aligned_cols=73 Identities=18% Similarity=0.217 Sum_probs=48.5
Q ss_pred HHHHHHHHHhh-cCCCC-CCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHH---hhccccc-ccccccccc
Q psy7829 358 RSIAHILDLCY-LNLHR-GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESI---ANISTNH-IDLIANETI 431 (511)
Q Consensus 358 ~~~~~~~~~~~-~~~~~-~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~---~~~~~~~-v~~i~~d~~ 431 (511)
+.+..++.... .++.+ .++|||+|||.|.+...|++..- ++..+|+|.++..++.|. ++-+.+| |+|.+.|..
T Consensus 50 riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~ 128 (227)
T KOG1271|consen 50 RIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDIT 128 (227)
T ss_pred HHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeecc
Confidence 44444444311 22343 44999999999999999998753 377999999987776643 3334444 777666643
No 413
>KOG3191|consensus
Probab=97.63 E-value=0.0003 Score=60.61 Aligned_cols=57 Identities=25% Similarity=0.433 Sum_probs=45.3
Q ss_pred CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccc--ccccccc
Q psy7829 373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH--IDLIANE 429 (511)
Q Consensus 373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~--v~~i~~d 429 (511)
....++|||||||..+..+++..+|+....++|++++.++...+....+. +++++.|
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~td 101 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTD 101 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehh
Confidence 47789999999999999999999888999999999988886555444333 4455555
No 414
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.62 E-value=6.2e-05 Score=67.85 Aligned_cols=76 Identities=24% Similarity=0.277 Sum_probs=48.4
Q ss_pred CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccc----ccccccccccccc-ccchhhhhc
Q psy7829 370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH----IDLIANETIEIIP-HILDLCYLN 444 (511)
Q Consensus 370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~----v~~i~~d~~~~l~-~~~d~i~~~ 444 (511)
.+.++++|+|+.||.|++++.+|+.. ....|+|+|++++.++...+|+..++ +..+++|..+.++ ..+|.+.++
T Consensus 98 ~v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~ 176 (200)
T PF02475_consen 98 LVKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMN 176 (200)
T ss_dssp C--TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE-
T ss_pred cCCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEEC
Confidence 36789999999999999999999854 44789999999888887777666544 4566788776663 445544444
Q ss_pred cc
Q psy7829 445 LH 446 (511)
Q Consensus 445 l~ 446 (511)
++
T Consensus 177 lp 178 (200)
T PF02475_consen 177 LP 178 (200)
T ss_dssp -T
T ss_pred Ch
Confidence 43
No 415
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.61 E-value=0.00021 Score=61.34 Aligned_cols=59 Identities=27% Similarity=0.404 Sum_probs=50.2
Q ss_pred EEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC
Q psy7829 136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE 200 (511)
Q Consensus 136 ~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 200 (511)
.+||+|||.|..+..+++.. +.++++++|.++.+.+.++++++.++ .++++++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~-----~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNN-----LPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcC-----CCcEEEEEeeeeC
Confidence 38999999999999999885 77799999999999999999998764 3468888777643
No 416
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.59 E-value=0.00046 Score=65.74 Aligned_cols=100 Identities=16% Similarity=0.222 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhcC---CCCCEEEEEcCCccHH-HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhcc-CCCcCCCCCeEE
Q psy7829 119 QIADAAENLKLHL---VDGAKVLDLGSGSGYQ-TCVFAHMVGPTGKVIGVEHIPELIEASLRNISKG-NKDLLDSGRVRI 193 (511)
Q Consensus 119 ~~~~~~~~l~~~~---~~~~~vLDiG~G~G~~-~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~~~~~v~~ 193 (511)
...++.++|.... ....++||||||.-.+ .+..++.+ +.+++|.|+++..++.|+++++.+ + ..++|++
T Consensus 85 Yi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~--~W~fvaTdID~~sl~~A~~nv~~N~~----L~~~I~l 158 (299)
T PF05971_consen 85 YIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLY--GWSFVATDIDPKSLESARENVERNPN----LESRIEL 158 (299)
T ss_dssp HHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-----TTTEEE
T ss_pred HHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhc--CCeEEEecCCHHHHHHHHHHHHhccc----cccceEE
Confidence 3344555554211 1245899999998765 45555554 689999999999999999999998 4 5668888
Q ss_pred EEccCC----CCC-CCCCCccEEEecCCCCchHHHH
Q psy7829 194 VEADAR----EGY-LPEAPYDVIYYGGCVSEVPSRV 224 (511)
Q Consensus 194 ~~~d~~----~~~-~~~~~fD~I~~~~~~~~~~~~~ 224 (511)
+...-. ... .....||+.+|+++++.-.+++
T Consensus 159 ~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~s~~e~ 194 (299)
T PF05971_consen 159 RKQKNPDNIFDGIIQPNERFDFTMCNPPFYSSQEEA 194 (299)
T ss_dssp EE--ST-SSTTTSTT--S-EEEEEE-----SS----
T ss_pred EEcCCccccchhhhcccceeeEEecCCccccChhhh
Confidence 765422 211 1235799999999997655443
No 417
>KOG1269|consensus
Probab=97.57 E-value=0.00015 Score=71.44 Aligned_cols=108 Identities=20% Similarity=0.239 Sum_probs=83.4
Q ss_pred HHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCC
Q psy7829 125 ENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLP 204 (511)
Q Consensus 125 ~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 204 (511)
..+.+...++.+++|+|||.|..+..++... ...++|+|.++..+..+........ ...+-.++.+|+.+.+++
T Consensus 102 ~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~----l~~k~~~~~~~~~~~~fe 175 (364)
T KOG1269|consen 102 VALRESCFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAY----LDNKCNFVVADFGKMPFE 175 (364)
T ss_pred HHHhhcCcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHH----hhhhcceehhhhhcCCCC
Confidence 3444456788899999999999999998874 4579999999988877776655443 222344588888888778
Q ss_pred CCCccEEEecCCCCch------HHHHHhhcccCcEEEEEE
Q psy7829 205 EAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAPI 238 (511)
Q Consensus 205 ~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~ 238 (511)
++.||.+.+.....+. .+++++++||||.++...
T Consensus 176 dn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 176 DNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred ccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHH
Confidence 8999999887666544 378999999999998853
No 418
>PRK10742 putative methyltransferase; Provisional
Probab=97.57 E-value=0.00027 Score=65.16 Aligned_cols=92 Identities=16% Similarity=0.228 Sum_probs=69.3
Q ss_pred HHHHHhhcCCCCC--EEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCC-CcCC---CCCeEEEEc
Q psy7829 123 AAENLKLHLVDGA--KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK-DLLD---SGRVRIVEA 196 (511)
Q Consensus 123 ~~~~l~~~~~~~~--~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-~~~~---~~~v~~~~~ 196 (511)
++..+. +++|. +|||+-+|+|..+..++... ++|+++|.++.+....++++++... ..+. ..+++++++
T Consensus 78 l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~G---~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 78 VAKAVG--IKGDYLPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred HHHHhC--CCCCCCCEEEECCCCccHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 344443 67777 89999999999999999873 3599999999999999998887310 0011 257999999
Q ss_pred cCCCCCC-CCCCccEEEecCCCCc
Q psy7829 197 DAREGYL-PEAPYDVIYYGGCVSE 219 (511)
Q Consensus 197 d~~~~~~-~~~~fD~I~~~~~~~~ 219 (511)
|...... ...+||+|+.++++++
T Consensus 153 da~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 153 SSLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred cHHHHHhhCCCCCcEEEECCCCCC
Confidence 9865332 1247999999999965
No 419
>KOG2730|consensus
Probab=97.56 E-value=0.00011 Score=65.16 Aligned_cols=78 Identities=19% Similarity=0.172 Sum_probs=62.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC----CCCCc
Q psy7829 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL----PEAPY 208 (511)
Q Consensus 133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~f 208 (511)
....|+|.-||.|+.++.++..+. .|++||++|.-+..|++|++-.| ..++|+|++||+.+... ....+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~---~VisIdiDPikIa~AkhNaeiYG----I~~rItFI~GD~ld~~~~lq~~K~~~ 166 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP---YVIAIDIDPVKIACARHNAEVYG----VPDRITFICGDFLDLASKLKADKIKY 166 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC---eEEEEeccHHHHHHHhccceeec----CCceeEEEechHHHHHHHHhhhhhee
Confidence 566899999999999999998874 49999999999999999999987 35699999999874321 12346
Q ss_pred cEEEecCCC
Q psy7829 209 DVIYYGGCV 217 (511)
Q Consensus 209 D~I~~~~~~ 217 (511)
|+|+.+++.
T Consensus 167 ~~vf~sppw 175 (263)
T KOG2730|consen 167 DCVFLSPPW 175 (263)
T ss_pred eeeecCCCC
Confidence 777776654
No 420
>KOG4589|consensus
Probab=97.55 E-value=0.00018 Score=62.12 Aligned_cols=97 Identities=24% Similarity=0.320 Sum_probs=67.6
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc-cCCCCC-------
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA-DAREGY------- 202 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-d~~~~~------- 202 (511)
++|+++|||+||.+|.++...-++.+|++.|.|+|+-.- . ..+.++++++ |+.++.
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~---------~-------p~~Ga~~i~~~dvtdp~~~~ki~e 130 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI---------E-------PPEGATIIQGNDVTDPETYRKIFE 130 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec---------c-------CCCCcccccccccCCHHHHHHHHH
Confidence 678999999999999999999999999999999998421 1 1223556665 554211
Q ss_pred -CCCCCccEEEecCCCCc-----------------hHHHHHhhcccCcEEEEEEccCCC
Q psy7829 203 -LPEAPYDVIYYGGCVSE-----------------VPSRVLNQLKKGGRILAPIGPMDD 243 (511)
Q Consensus 203 -~~~~~fD~I~~~~~~~~-----------------~~~~~~~~LkpgG~l~~~~~~~~~ 243 (511)
.+....|+|+++..... .+.-....++|+|.+++-++....
T Consensus 131 ~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 131 ALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred hCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 13366899988754311 112234677899999997765443
No 421
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.55 E-value=0.00032 Score=64.59 Aligned_cols=111 Identities=15% Similarity=0.197 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHhhcCCC---CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccc
Q psy7829 356 SERSIAHILDLCYLNLH---RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIE 432 (511)
Q Consensus 356 ~~~~~~~~~~~~~~~~~---~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~ 432 (511)
+.....+++........ ...++||||+|.|..|..++..+ .+|++.|.+..|...-.+ .+.+++..+...
T Consensus 74 S~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~----kg~~vl~~~~w~ 146 (265)
T PF05219_consen 74 SEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSK----KGFTVLDIDDWQ 146 (265)
T ss_pred cHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHh----CCCeEEehhhhh
Confidence 44556566664222222 46789999999999999999998 789999999888554322 222333222222
Q ss_pred cccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 433 IIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 433 ~l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
..+..+|.|-. -.+||=|--+-.+...+.+.++|+|+++..
T Consensus 147 ~~~~~fDvIsc-----LNvLDRc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 147 QTDFKFDVISC-----LNVLDRCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred ccCCceEEEee-----hhhhhccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 11223443322 136777778888889999999999987543
No 422
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.55 E-value=0.00037 Score=69.76 Aligned_cols=61 Identities=20% Similarity=0.095 Sum_probs=48.2
Q ss_pred CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccc---cccccccccccc
Q psy7829 373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH---IDLIANETIEII 434 (511)
Q Consensus 373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~---v~~i~~d~~~~l 434 (511)
++.+|||++||+|..++.+|...+ ..+|+++|++++.++.+++|+..++ ++++++|....+
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l 120 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALL 120 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHH
Confidence 357899999999999999998774 2589999999998888888776544 446777765444
No 423
>KOG1122|consensus
Probab=97.51 E-value=0.00056 Score=66.75 Aligned_cols=88 Identities=15% Similarity=0.203 Sum_probs=66.4
Q ss_pred cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHH---HHHhhccccccccccccccccccccchhhhhcc
Q psy7829 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAI---ESIANISTNHIDLIANETIEIIPHILDLCYLNL 445 (511)
Q Consensus 369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~---~~~~~~~~~~v~~i~~d~~~~l~~~~d~i~~~l 445 (511)
+..++|.+|||+.+.+|.-|..+|..++..|.|+|.|.+...++ .+..+++..|..+.+.|..++-...+ ..
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~----~~- 311 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEF----PG- 311 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccccccc----Cc-
Confidence 67789999999999999999999999988999999998765555 56667778887777777665432221 11
Q ss_pred cCCcEEEEEcC-CccHH
Q psy7829 446 HRGAKVLEIGS-GSGYL 461 (511)
Q Consensus 446 ~~~~~vLD~~~-g~g~~ 461 (511)
..+...||..| |||.+
T Consensus 312 ~fDRVLLDAPCSGtgvi 328 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVI 328 (460)
T ss_pred ccceeeecCCCCCCccc
Confidence 23456778888 77766
No 424
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.49 E-value=0.00013 Score=67.12 Aligned_cols=56 Identities=25% Similarity=0.328 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHh
Q psy7829 355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA 416 (511)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~ 416 (511)
.+|..+.. +.. +..+++.+||..|||.|+...+||... -+|+|+|+++..++++.+
T Consensus 22 ~~p~L~~~-~~~--l~~~~~~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~ 77 (218)
T PF05724_consen 22 PNPALVEY-LDS--LALKPGGRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFE 77 (218)
T ss_dssp STHHHHHH-HHH--HTTSTSEEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHH
T ss_pred CCHHHHHH-HHh--cCCCCCCeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHH
Confidence 45666644 443 567888999999999999999999764 799999999998888743
No 425
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.49 E-value=0.00039 Score=60.51 Aligned_cols=103 Identities=27% Similarity=0.304 Sum_probs=63.7
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHH----HHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCC
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPEL----IEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEA 206 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~----~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 206 (511)
++++..|+|+=.|.|+++..++..+++.+.|+++-..+.. .+..+.+..... -...|++.+-.+..... ...
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e---~~~aN~e~~~~~~~A~~-~pq 121 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAARE---PVYANVEVIGKPLVALG-APQ 121 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhh---hhhhhhhhhCCcccccC-CCC
Confidence 7899999999999999999999999999999998543321 111111100000 02234554444443322 224
Q ss_pred CccEEEecCCCC-------------chHHHHHhhcccCcEEEEE
Q psy7829 207 PYDVIYYGGCVS-------------EVPSRVLNQLKKGGRILAP 237 (511)
Q Consensus 207 ~fD~I~~~~~~~-------------~~~~~~~~~LkpgG~l~~~ 237 (511)
..|+++.....+ .+...+++.|||||.+++.
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~ 165 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVE 165 (238)
T ss_pred cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEE
Confidence 455554433222 2337899999999999884
No 426
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.46 E-value=0.00074 Score=60.18 Aligned_cols=109 Identities=22% Similarity=0.287 Sum_probs=72.2
Q ss_pred EEEEEeccccHHHHHHHHHhCCCcEEEEEcCCH---HHHHHHHhhccccccccccccccc-cccccchhhhhcccCCcEE
Q psy7829 376 KVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMM---DIAIESIANISTNHIDLIANETIE-IIPHILDLCYLNLHRGAKV 451 (511)
Q Consensus 376 ~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~---~~~~~~~~~~~~~~v~~i~~d~~~-~l~~~~d~i~~~l~~~~~v 451 (511)
+++|||||.|.=++.+|-.. |+.+++-+|.+. ...+.....++.+|++++++...+ .....+|.+.+.-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRA------ 123 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARA------ 123 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEES------
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeeh------
Confidence 89999999999999998666 889999999884 555677888999999999876544 2333343332211
Q ss_pred EEEcCCccHHHHHHHHHhCCCcEEEEh-----HHHHHHHHHHHHhcCC
Q psy7829 452 LEIGSGSGYLATLMAHLVGPTGHVTGL-----EHMMDIAIESIANIST 494 (511)
Q Consensus 452 LD~~~g~g~~~~~l~~~l~~~g~v~~~-----~~ml~~a~~~~~~~~~ 494 (511)
-+....+.....+.++++|.++.. .+=++.+++.....+.
T Consensus 124 ---v~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~ 168 (184)
T PF02527_consen 124 ---VAPLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGL 168 (184)
T ss_dssp ---SSSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCE
T ss_pred ---hcCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCC
Confidence 122334445555667889998888 3334556666666554
No 427
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.45 E-value=0.0047 Score=56.50 Aligned_cols=119 Identities=18% Similarity=0.172 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEE
Q psy7829 116 APNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE 195 (511)
Q Consensus 116 ~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~ 195 (511)
......+++-.+...--.|.+||-+|=.- ..|++++.. +...+|+.+|+++..++..++.+++.| . +|+.+.
T Consensus 27 ~eT~~~Ra~~~~~~gdL~gk~il~lGDDD-LtSlA~al~-~~~~~I~VvDiDeRll~fI~~~a~~~g-----l-~i~~~~ 98 (243)
T PF01861_consen 27 PETTLRRAALMAERGDLEGKRILFLGDDD-LTSLALALT-GLPKRITVVDIDERLLDFINRVAEEEG-----L-PIEAVH 98 (243)
T ss_dssp HHHHHHHHHHHHHTT-STT-EEEEES-TT--HHHHHHHH-T--SEEEEE-S-HHHHHHHHHHHHHHT--------EEEE-
T ss_pred HHHHHHHHHHHHhcCcccCCEEEEEcCCc-HHHHHHHhh-CCCCeEEEEEcCHHHHHHHHHHHHHcC-----C-ceEEEE
Confidence 33445554444442223689999988332 345555544 355789999999999999999998865 3 399999
Q ss_pred ccCCCCCCC--CCCccEEEecCCCC-----chHHHHHhhcccCc-EEEEEEccCC
Q psy7829 196 ADAREGYLP--EAPYDVIYYGGCVS-----EVPSRVLNQLKKGG-RILAPIGPMD 242 (511)
Q Consensus 196 ~d~~~~~~~--~~~fD~I~~~~~~~-----~~~~~~~~~LkpgG-~l~~~~~~~~ 242 (511)
.|+..++++ .++||+++.+++.- -+..+..+.||..| ..++.+....
T Consensus 99 ~DlR~~LP~~~~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~ 153 (243)
T PF01861_consen 99 YDLRDPLPEELRGKFDVFFTDPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKE 153 (243)
T ss_dssp --TTS---TTTSS-BSEEEE---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT
T ss_pred ecccccCCHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCc
Confidence 999987765 38999999998873 23477788888766 6677666554
No 428
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.41 E-value=0.0012 Score=59.36 Aligned_cols=127 Identities=20% Similarity=0.322 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHh-hcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHH----HHhhccccccccccccc
Q psy7829 356 SERSIAHILDLC-YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE----SIANISTNHIDLIANET 430 (511)
Q Consensus 356 ~~~~~~~~~~~~-~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~----~~~~~~~~~v~~i~~d~ 430 (511)
..+..+.++.-. .+.+++|.+||-+|+++|...-.++..++++|.|+|+|.++...+. +.++ +|+--+..|+
T Consensus 55 RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DA 131 (229)
T PF01269_consen 55 RSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDA 131 (229)
T ss_dssp T-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-T
T ss_pred hhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccC
Confidence 445555554432 2678899999999999999999999999999999999998654443 3332 3444333333
Q ss_pred cc-----cccccchhhhhcccCCcEEEEEcC-CccHHH-HHHHHHhCCCcEEEEh------------HHHHHHHHHHHHh
Q psy7829 431 IE-----IIPHILDLCYLNLHRGAKVLEIGS-GSGYLA-TLMAHLVGPTGHVTGL------------EHMMDIAIESIAN 491 (511)
Q Consensus 431 ~~-----~l~~~~d~i~~~l~~~~~vLD~~~-g~g~~~-~~l~~~l~~~g~v~~~------------~~ml~~a~~~~~~ 491 (511)
.. .+-...|.++ .|+.- +...+. ......|+++|+++.. +.....-.+++++
T Consensus 132 r~P~~Y~~lv~~VDvI~---------~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~ 202 (229)
T PF01269_consen 132 RHPEKYRMLVEMVDVIF---------QDVAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKE 202 (229)
T ss_dssp TSGGGGTTTS--EEEEE---------EE-SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHC
T ss_pred CChHHhhcccccccEEE---------ecCCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHH
Confidence 21 1112334333 34432 122222 2333467999987755 3444555566666
Q ss_pred cCC
Q psy7829 492 IST 494 (511)
Q Consensus 492 ~~~ 494 (511)
.++
T Consensus 203 ~~~ 205 (229)
T PF01269_consen 203 EGF 205 (229)
T ss_dssp TTC
T ss_pred cCC
Confidence 555
No 429
>KOG2187|consensus
Probab=97.41 E-value=0.00031 Score=70.36 Aligned_cols=67 Identities=21% Similarity=0.352 Sum_probs=54.9
Q ss_pred cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccccccccccc
Q psy7829 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEIIPHIL 438 (511)
Q Consensus 369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~l~~~~ 438 (511)
+.++.+..+||+.||||.+++.+|+.+ .+|+|||++++.+.-|.+|.. ..|.+|+++-+.+.++.++
T Consensus 379 ~~l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~ 448 (534)
T KOG2187|consen 379 AGLPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLL 448 (534)
T ss_pred hCCCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhc
Confidence 778888999999999999999999988 899999999888777766654 6677899886555555443
No 430
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.39 E-value=0.0007 Score=65.19 Aligned_cols=86 Identities=23% Similarity=0.256 Sum_probs=62.6
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV 210 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 210 (511)
+.+|.++||+||++|.++..+.++. .+|++||..+- - ..+. ..++|.....|.....+..+.+|.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG---~~V~AVD~g~l-~----~~L~-------~~~~V~h~~~d~fr~~p~~~~vDw 273 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRG---MFVTAVDNGPM-A----QSLM-------DTGQVEHLRADGFKFRPPRKNVDW 273 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcC---CEEEEEechhc-C----Hhhh-------CCCCEEEEeccCcccCCCCCCCCE
Confidence 3589999999999999999999874 37999996542 1 1222 345899999998764433578999
Q ss_pred EEecCCCC--chHHHHHhhcccC
Q psy7829 211 IYYGGCVS--EVPSRVLNQLKKG 231 (511)
Q Consensus 211 I~~~~~~~--~~~~~~~~~Lkpg 231 (511)
++|+.... .+.+-+.++|..|
T Consensus 274 vVcDmve~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 274 LVCDMVEKPARVAELMAQWLVNG 296 (357)
T ss_pred EEEecccCHHHHHHHHHHHHhcC
Confidence 99997764 2345566666555
No 431
>PRK11524 putative methyltransferase; Provisional
Probab=97.38 E-value=0.0024 Score=61.65 Aligned_cols=224 Identities=13% Similarity=0.027 Sum_probs=0.0
Q ss_pred CCCCCeEEEEccCCCC--CCCCCCccEEEecCCCCc----------------------hHHHHHhhcccCcEEEEEEccC
Q psy7829 186 LDSGRVRIVEADAREG--YLPEAPYDVIYYGGCVSE----------------------VPSRVLNQLKKGGRILAPIGPM 241 (511)
Q Consensus 186 ~~~~~v~~~~~d~~~~--~~~~~~fD~I~~~~~~~~----------------------~~~~~~~~LkpgG~l~~~~~~~ 241 (511)
+...+.+++++|..+. ..++++||+|++++++.. .+.++.++|||||.+++.+...
T Consensus 4 ~~~~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~ 83 (284)
T PRK11524 4 FGNEAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTE 83 (284)
T ss_pred ccCCCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCch
Q ss_pred CCcceEEEEEEecCCeEEEEeecceEEEecccccccccccccccCccccccccccccchhhHHHHhhhhhccCCCcccCc
Q psy7829 242 DDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQMDPVDENLFTLMDKDSDELFSERVWELKQDPLYTTEK 321 (511)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~ 321 (511)
............ +......-.....-................+....-....-.......+........-......
T Consensus 84 ~~~~~~~~~~~~----f~~~~~iiW~k~~~~~~~~~~~~~~~e~i~~~~K~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 159 (284)
T PRK11524 84 NMPFIDLYCRKL----FTIKSRIVWSYDSSGVQAKKYFGSMYEPILMMVKDAKNYTFNGDAILVEAKTGAKRALIDYRKN 159 (284)
T ss_pred hhhHHHHHHhcC----cceEEEEEEEeCCCCCcccCcCCCCccEEEEEEcCcccccccHHHhcccccccchhcccccccc
Q ss_pred cccCCCCCCCCCceeeeccccccccCCCCCCCCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEE
Q psy7829 322 WIPQPPGYTTPGEITTRDKYGRLVHGSAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHV 401 (511)
Q Consensus 322 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v 401 (511)
..........++.+=....-............+-+.....+++.. --.+|+.|||--+|||..++++.+.. -+.
T Consensus 160 ~~~~~~~~~~~~~vw~~~~~~~~~~~~~~HPt~kP~~L~erlI~~---~S~~GD~VLDPF~GSGTT~~AA~~lg---R~~ 233 (284)
T PRK11524 160 PPQPYNTQKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILA---SSNPGDIVLDPFAGSFTTGAVAKASG---RKF 233 (284)
T ss_pred ccccCCCCCCCCCEEEeCCccccccccccCcccChHHHHHHHHHH---hCCCCCEEEECCCCCcHHHHHHHHcC---CCE
Q ss_pred EEEcCCHHHHHHHHhhcc
Q psy7829 402 TGLEHMMDIAIESIANIS 419 (511)
Q Consensus 402 ~~id~~~~~~~~~~~~~~ 419 (511)
+|+|++++.++.+.+++.
T Consensus 234 IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 234 IGIEINSEYIKMGLRRLD 251 (284)
T ss_pred EEEeCCHHHHHHHHHHHH
No 432
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.38 E-value=0.00022 Score=61.51 Aligned_cols=56 Identities=20% Similarity=0.317 Sum_probs=49.0
Q ss_pred CCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccccc
Q psy7829 374 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIE 432 (511)
Q Consensus 374 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~ 432 (511)
.+.+.|+|+|||.++..+|+.. .+|++||.++..++.+.+|+. ..|++++.+|+..
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~ 91 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARD 91 (252)
T ss_pred hhceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccc
Confidence 4789999999999999999886 799999999999999999864 5778999888644
No 433
>KOG2730|consensus
Probab=97.36 E-value=0.0002 Score=63.59 Aligned_cols=76 Identities=12% Similarity=0.061 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----cccccccccccc
Q psy7829 356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANETI 431 (511)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d~~ 431 (511)
+|+.++..+.......-....|+|.-||.|..++..|..+ ..|++||+|+..+..++.|++ .+.|+|++||.+
T Consensus 77 Tpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~l 153 (263)
T KOG2730|consen 77 TPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFL 153 (263)
T ss_pred ccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCCceeEEEechHH
Confidence 4555555555433333367889999999999999999887 799999999988888888877 356899999976
Q ss_pred ccc
Q psy7829 432 EII 434 (511)
Q Consensus 432 ~~l 434 (511)
+..
T Consensus 154 d~~ 156 (263)
T KOG2730|consen 154 DLA 156 (263)
T ss_pred HHH
Confidence 653
No 434
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.35 E-value=0.0025 Score=55.59 Aligned_cols=99 Identities=27% Similarity=0.374 Sum_probs=66.2
Q ss_pred EEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC--CCCCC-CCccEEEe
Q psy7829 137 VLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE--GYLPE-APYDVIYY 213 (511)
Q Consensus 137 vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~--~~~~~-~~fD~I~~ 213 (511)
++|+|||+|... .++........++++|+++.++..++..... . ....+.+...|... ..... ..||++..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 125 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-A----GLGLVDFVVADALGGVLPFEDSASFDLVIS 125 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c----CCCceEEEEeccccCCCCCCCCCceeEEee
Confidence 999999999987 4444432123789999999999885554322 1 11116788888765 22232 37999944
Q ss_pred cCCC-----CchHHHHHhhcccCcEEEEEEccC
Q psy7829 214 GGCV-----SEVPSRVLNQLKKGGRILAPIGPM 241 (511)
Q Consensus 214 ~~~~-----~~~~~~~~~~LkpgG~l~~~~~~~ 241 (511)
.... ......+.+.|+|+|.+++.....
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 126 LLVLHLLPPAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred eeehhcCCHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 3333 345578999999999999875543
No 435
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.34 E-value=0.0017 Score=62.09 Aligned_cols=84 Identities=23% Similarity=0.339 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEE
Q psy7829 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIY 212 (511)
Q Consensus 133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~ 212 (511)
...+|||+|||+|..+..+...++...+++++|.|+.|++.++.-+.... ....... ..+......+....|+|+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~----~~~~~~~-~~~~~~~~~~~~~~DLvi 107 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP----NNRNAEW-RRVLYRDFLPFPPDDLVI 107 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc----ccccchh-hhhhhcccccCCCCcEEE
Confidence 45689999999998887777777555679999999999999988766531 1111111 111111111123349999
Q ss_pred ecCCCCchH
Q psy7829 213 YGGCVSEVP 221 (511)
Q Consensus 213 ~~~~~~~~~ 221 (511)
++.++.++.
T Consensus 108 ~s~~L~EL~ 116 (274)
T PF09243_consen 108 ASYVLNELP 116 (274)
T ss_pred EehhhhcCC
Confidence 998886654
No 436
>KOG3115|consensus
Probab=97.27 E-value=0.00098 Score=58.48 Aligned_cols=115 Identities=15% Similarity=0.288 Sum_probs=72.5
Q ss_pred CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCH---HHHHHHHhhcc-------ccccccccccccccccccchhh-
Q psy7829 373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMM---DIAIESIANIS-------TNHIDLIANETIEIIPHILDLC- 441 (511)
Q Consensus 373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~---~~~~~~~~~~~-------~~~v~~i~~d~~~~l~~~~d~i- 441 (511)
..-.+.|||||.|.+.+.++..+ |+..++|+||.. +.++..++.++ ..|+.++..++...++..|..-
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgq 138 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQ 138 (249)
T ss_pred ccceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcc
Confidence 34568999999999999999998 889999999863 33333222222 6778888777777776543221
Q ss_pred ------------hhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcC
Q psy7829 442 ------------YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANIS 493 (511)
Q Consensus 442 ------------~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~ 493 (511)
+...+-.++++ +-.+....+-.++++|.++-+ .+.-+...+.+...+
T Consensus 139 Lskmff~fpdpHfk~~khk~rii-----~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e~hp 200 (249)
T KOG3115|consen 139 LSKMFFLFPDPHFKARKHKWRII-----TSTLLSEYAYVLREGGILYTITDVKELHEWMVKHLEEHP 200 (249)
T ss_pred cccceeecCChhHhhhhccceee-----chhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHHhCc
Confidence 11122233444 234566667778889988877 333333334444433
No 437
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.23 E-value=0.00046 Score=59.18 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=41.3
Q ss_pred EEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccc
Q psy7829 376 KVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIAN 428 (511)
Q Consensus 376 ~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~ 428 (511)
++||+|||.|+.+..+++.. +..+|+++|.++++....++++. ..++.+++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~ 55 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNA 55 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 48999999999999999876 66799999999988887776654 344565543
No 438
>KOG1331|consensus
Probab=97.22 E-value=0.00026 Score=65.72 Aligned_cols=94 Identities=23% Similarity=0.338 Sum_probs=73.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCe-EEEEccCCCCCCCCCCcc
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRV-RIVEADAREGYLPEAPYD 209 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~fD 209 (511)
...+..++|+|||.|-.... .|...+++.|++...+..+++. +. ....+|+...+....+||
T Consensus 43 ~~~gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~~l~~~ak~~------------~~~~~~~ad~l~~p~~~~s~d 105 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCTGLLGGAKRS------------GGDNVCRADALKLPFREESFD 105 (293)
T ss_pred cCCcceeeecccCCcccCcC-----CCcceeeecchhhhhccccccC------------CCceeehhhhhcCCCCCCccc
Confidence 34688999999999965421 2556789999999988877643 22 577788887776778999
Q ss_pred EEEecCCCCchH---------HHHHhhcccCcEEEEEEccC
Q psy7829 210 VIYYGGCVSEVP---------SRVLNQLKKGGRILAPIGPM 241 (511)
Q Consensus 210 ~I~~~~~~~~~~---------~~~~~~LkpgG~l~~~~~~~ 241 (511)
.+++....+++. +++.+.|+|||...+.+...
T Consensus 106 ~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 106 AALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred cchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 999999988774 67889999999988876543
No 439
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.20 E-value=0.001 Score=55.74 Aligned_cols=77 Identities=25% Similarity=0.354 Sum_probs=54.0
Q ss_pred eEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC--CCCCCCccEEEecCCC-----Cch----------HH
Q psy7829 160 KVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG--YLPEAPYDVIYYGGCV-----SEV----------PS 222 (511)
Q Consensus 160 ~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~I~~~~~~-----~~~----------~~ 222 (511)
+|+++|+.+++++.+++++++.+ ..+++++++.+-... +.+.+++|+++.|..+ +.+ .+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~----~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG----LEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-----GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcC----CCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence 59999999999999999999875 345799998765432 1122589999988654 111 26
Q ss_pred HHHhhcccCcEEEEEEcc
Q psy7829 223 RVLNQLKKGGRILAPIGP 240 (511)
Q Consensus 223 ~~~~~LkpgG~l~~~~~~ 240 (511)
.+.+.|+|||.+.+.+++
T Consensus 77 ~al~lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 77 AALELLKPGGIITIVVYP 94 (140)
T ss_dssp HHHHHEEEEEEEEEEE--
T ss_pred HHHHhhccCCEEEEEEeC
Confidence 789999999999998764
No 440
>KOG2361|consensus
Probab=97.17 E-value=0.00055 Score=61.88 Aligned_cols=126 Identities=13% Similarity=0.047 Sum_probs=70.7
Q ss_pred CEEEEEeccccHHHHHHHHHhCCC--cEEEEEcCCHHHHHHHHhhccc--ccccccccc----c-ccc-ccccchhhhhc
Q psy7829 375 AKVLEIGSGSGYLATLMAHLVGPT--GHVTGLEHMMDIAIESIANIST--NHIDLIANE----T-IEI-IPHILDLCYLN 444 (511)
Q Consensus 375 ~~vLdiG~G~G~~~~~la~~~~~~--~~v~~id~~~~~~~~~~~~~~~--~~v~~i~~d----~-~~~-l~~~~d~i~~~ 444 (511)
.+|||||||-|.....+.+.. |+ -+|++.|-++..++.-.++.+. .++.....| . ... -+..+|.+.+-
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~-~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTS-PNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hhheeeccCCCcccchhhhcC-CCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence 389999999999999988765 54 7899999998777765555442 222211111 1 000 01112221111
Q ss_pred ccCCcEEEEEcCCccHH-HHHHHHHhCCCcEEEEh-HHHHHHHHHHHHhcCC-CceEEEechHH
Q psy7829 445 LHRGAKVLEIGSGSGYL-ATLMAHLVGPTGHVTGL-EHMMDIAIESIANIST-NHIDLIANETI 505 (511)
Q Consensus 445 l~~~~~vLD~~~g~g~~-~~~l~~~l~~~g~v~~~-~~ml~~a~~~~~~~~~-~~i~~i~~d~~ 505 (511)
-.+..|+|+-... ...+.+.++|||.++.- =...+.++.+.++... ..-.+|.+|..
T Consensus 152 ----FvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT 211 (264)
T KOG2361|consen 152 ----FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGT 211 (264)
T ss_pred ----EEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCc
Confidence 0223345544333 34567778999988766 2223445555554443 34456777754
No 441
>KOG4300|consensus
Probab=97.16 E-value=0.00079 Score=59.33 Aligned_cols=93 Identities=19% Similarity=0.273 Sum_probs=55.6
Q ss_pred CEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---cccccc-ccccccccccc----ccchhhhhccc
Q psy7829 375 AKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHID-LIANETIEIIP----HILDLCYLNLH 446 (511)
Q Consensus 375 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~-~i~~d~~~~l~----~~~d~i~~~l~ 446 (511)
..|||+|||||..--..-. .|..+|+++|.++.|-+-+.+.+ ...+++ ++.+++.. ++ ...|.+...+
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~-l~~l~d~s~DtVV~Tl- 153 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGEN-LPQLADGSYDTVVCTL- 153 (252)
T ss_pred cceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhc-CcccccCCeeeEEEEE-
Confidence 3489999999997654421 26689999999866655433322 455566 66555432 22 2233222211
Q ss_pred CCcEEEEEcCC---ccHHHHHHHHHhCCCcEEEEh
Q psy7829 447 RGAKVLEIGSG---SGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 447 ~~~~vLD~~~g---~g~~~~~l~~~l~~~g~v~~~ 478 (511)
+| |. +-.....+.+.|+|+|+++-+
T Consensus 154 ----vL---CSve~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 154 ----VL---CSVEDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred ----EE---eccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 11 33 333456677788999998877
No 442
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.15 E-value=0.0011 Score=60.25 Aligned_cols=60 Identities=27% Similarity=0.339 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Q psy7829 353 GPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESI 415 (511)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~ 415 (511)
|...+..+..++.. +.+.+++.++|||||.|...+.+|...+ -.+++|||+++..+..+.
T Consensus 24 GEi~~~~~~~il~~--~~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~ 83 (205)
T PF08123_consen 24 GEISPEFVSKILDE--LNLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAE 83 (205)
T ss_dssp GGCHHHHHHHHHHH--TT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHH
T ss_pred eecCHHHHHHHHHH--hCCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHH
Confidence 35667778888887 7889999999999999999988887763 256999999976666543
No 443
>PLN02823 spermine synthase
Probab=97.15 E-value=0.0026 Score=62.35 Aligned_cols=103 Identities=14% Similarity=0.150 Sum_probs=69.5
Q ss_pred CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-------cccccccccccccccc---ccchh
Q psy7829 371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-------TNHIDLIANETIEIIP---HILDL 440 (511)
Q Consensus 371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-------~~~v~~i~~d~~~~l~---~~~d~ 440 (511)
.+...+||.||+|.|..+..+.+.. +..+|+.+|+++++++.+++.+. .++++++.+|+...+. ..+|.
T Consensus 101 ~~~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDv 179 (336)
T PLN02823 101 HPNPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDV 179 (336)
T ss_pred CCCCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccE
Confidence 3456799999999999999887654 34789999999999999888764 3568888888777654 23555
Q ss_pred hhhcccCCcEEEEEcCC----ccHHHH-HHHHHhCCCcEEEE
Q psy7829 441 CYLNLHRGAKVLEIGSG----SGYLAT-LMAHLVGPTGHVTG 477 (511)
Q Consensus 441 i~~~l~~~~~vLD~~~g----~g~~~~-~l~~~l~~~g~v~~ 477 (511)
++.+...... -+.. +-.+.. .+.+.|+|+|-++.
T Consensus 180 Ii~D~~dp~~---~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~ 218 (336)
T PLN02823 180 IIGDLADPVE---GGPCYQLYTKSFYERIVKPKLNPGGIFVT 218 (336)
T ss_pred EEecCCCccc---cCcchhhccHHHHHHHHHHhcCCCcEEEE
Confidence 5544321100 0000 112333 56678999998763
No 444
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.14 E-value=0.002 Score=62.61 Aligned_cols=106 Identities=21% Similarity=0.258 Sum_probs=70.9
Q ss_pred HHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccc----ccccccccccc
Q psy7829 358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH----IDLIANETIEI 433 (511)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~----v~~i~~d~~~~ 433 (511)
.+-.++..+ ..+|.+|||+-+|.|++|+.+|+... ..|+|+|++++.++...+|+..+. ++.+++|+.+.
T Consensus 177 ~ER~Rva~~----v~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev 250 (341)
T COG2520 177 TERARVAEL----VKEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREV 250 (341)
T ss_pred HHHHHHHhh----hcCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHh
Confidence 334455443 45699999999999999999998874 349999999998888888877555 55678887666
Q ss_pred ccc--cchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 434 IPH--ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 434 l~~--~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
.+. .+|.+.+++..+. -.+.....+.++++|.+.-.
T Consensus 251 ~~~~~~aDrIim~~p~~a---------~~fl~~A~~~~k~~g~iHyy 288 (341)
T COG2520 251 APELGVADRIIMGLPKSA---------HEFLPLALELLKDGGIIHYY 288 (341)
T ss_pred hhccccCCEEEeCCCCcc---------hhhHHHHHHHhhcCcEEEEE
Confidence 554 3555555544431 11223333556666655443
No 445
>KOG3178|consensus
Probab=97.14 E-value=0.0019 Score=62.07 Aligned_cols=91 Identities=18% Similarity=0.216 Sum_probs=71.3
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEe
Q psy7829 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYY 213 (511)
Q Consensus 134 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~ 213 (511)
-...+|+|.|.|..+..+...+ | ++-+++.+...+..++.++. +.|+.+-+|..+..+. -|+|++
T Consensus 178 v~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v~~~a~~~~---------~gV~~v~gdmfq~~P~---~daI~m 242 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFVLAAAPYLA---------PGVEHVAGDMFQDTPK---GDAIWM 242 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHHHhhhhhhc---------CCcceecccccccCCC---cCeEEE
Confidence 3679999999999999998876 5 38888888887777766653 2488889998876432 369998
Q ss_pred cCCCCc--------hHHHHHhhcccCcEEEEEEc
Q psy7829 214 GGCVSE--------VPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 214 ~~~~~~--------~~~~~~~~LkpgG~l~~~~~ 239 (511)
-..+++ +++++++.|+|||.+++.-.
T Consensus 243 kWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 243 KWILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred EeecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 877754 45899999999999998533
No 446
>KOG3115|consensus
Probab=97.11 E-value=0.0015 Score=57.38 Aligned_cols=106 Identities=13% Similarity=0.144 Sum_probs=73.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCC--cCCCCCeEEEEccCCCCCC---CCCC
Q psy7829 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKD--LLDSGRVRIVEADAREGYL---PEAP 207 (511)
Q Consensus 133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~v~~~~~d~~~~~~---~~~~ 207 (511)
..-.+.|||||-|.+...++..+ |+--+.|.||-....++.++++...... .-...|+.+...+.....+ ..++
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgq 138 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQ 138 (249)
T ss_pred ccceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcc
Confidence 34569999999999999999998 8889999999999989888887764210 0136678888887764222 2233
Q ss_pred ccEEEecCCCC--------------chHHHHHhhcccCcEEEEEEc
Q psy7829 208 YDVIYYGGCVS--------------EVPSRVLNQLKKGGRILAPIG 239 (511)
Q Consensus 208 fD~I~~~~~~~--------------~~~~~~~~~LkpgG~l~~~~~ 239 (511)
.+-.+...+-+ .+..+..-+|++||.++....
T Consensus 139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 34343333322 234567778999999987544
No 447
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.10 E-value=0.00075 Score=63.56 Aligned_cols=99 Identities=17% Similarity=0.309 Sum_probs=66.3
Q ss_pred cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccccccchhhhhcccCC
Q psy7829 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIPHILDLCYLNLHRG 448 (511)
Q Consensus 369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l~~~~d~i~~~l~~~ 448 (511)
....+..+|+|||.|+|.++..+++.. |+.+++..|. ++.++.+.+ .++++++.+|-.+.+|. .|.++..-
T Consensus 96 ~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~---~~rv~~~~gd~f~~~P~-~D~~~l~~--- 166 (241)
T PF00891_consen 96 FDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE---ADRVEFVPGDFFDPLPV-ADVYLLRH--- 166 (241)
T ss_dssp STTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH---TTTEEEEES-TTTCCSS-ESEEEEES---
T ss_pred ccccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc---ccccccccccHHhhhcc-ccceeeeh---
Confidence 566778899999999999999999998 8899999998 555555555 67788888887666665 44433211
Q ss_pred cEEE-EEcC-CccHHHHHHHHHhCCC--cEEEEh
Q psy7829 449 AKVL-EIGS-GSGYLATLMAHLVGPT--GHVTGL 478 (511)
Q Consensus 449 ~~vL-D~~~-g~g~~~~~l~~~l~~~--g~v~~~ 478 (511)
|| |+.- -.-.+...+++.++|+ |+|+.+
T Consensus 167 --vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 167 --VLHDWSDEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp --SGGGS-HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred --hhhhcchHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 00 0000 0112356677788987 998877
No 448
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.09 E-value=0.00056 Score=61.08 Aligned_cols=89 Identities=19% Similarity=0.314 Sum_probs=54.7
Q ss_pred CCCHHHHHHHHHHhhcCC--CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHH---HHhhccccc-ccccc
Q psy7829 354 PSSERSIAHILDLCYLNL--HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE---SIANISTNH-IDLIA 427 (511)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~--~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~---~~~~~~~~~-v~~i~ 427 (511)
|++.+.-..+... +.. -+|.+|||+-||||.+++.+..+.. .+|+.||.+.+.++. |.++++..+ +.++.
T Consensus 23 PT~drvrealFni--L~~~~~~g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~ 98 (183)
T PF03602_consen 23 PTTDRVREALFNI--LQPRNLEGARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIK 98 (183)
T ss_dssp SSSHHHHHHHHHH--HHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEE
T ss_pred CCcHHHHHHHHHH--hcccccCCCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHHhCCCcceeeec
Confidence 4455554444444 332 4799999999999999999888764 799999999766655 444455443 67777
Q ss_pred cccccccc------ccchhhhhccc
Q psy7829 428 NETIEIIP------HILDLCYLNLH 446 (511)
Q Consensus 428 ~d~~~~l~------~~~d~i~~~l~ 446 (511)
.|....+. ..+|.++.+.+
T Consensus 99 ~d~~~~l~~~~~~~~~fDiIflDPP 123 (183)
T PF03602_consen 99 GDAFKFLLKLAKKGEKFDIIFLDPP 123 (183)
T ss_dssp SSHHHHHHHHHHCTS-EEEEEE--S
T ss_pred cCHHHHHHhhcccCCCceEEEECCC
Confidence 77555442 34566655544
No 449
>PRK13699 putative methylase; Provisional
Probab=97.09 E-value=0.0029 Score=58.63 Aligned_cols=182 Identities=13% Similarity=0.053 Sum_probs=0.0
Q ss_pred CeEEEEccCCCC--CCCCCCccEEEecCCCC---------------------chHHHHHhhcccCcEEEEEEccCCCcce
Q psy7829 190 RVRIVEADAREG--YLPEAPYDVIYYGGCVS---------------------EVPSRVLNQLKKGGRILAPIGPMDDFQK 246 (511)
Q Consensus 190 ~v~~~~~d~~~~--~~~~~~fD~I~~~~~~~---------------------~~~~~~~~~LkpgG~l~~~~~~~~~~~~ 246 (511)
..+++++|..+. ..+++++|+|+.++|+. ....++.++|||||.+++..+.......
T Consensus 1 ~~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~~~~ 80 (227)
T PRK13699 1 MSRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVDRF 80 (227)
T ss_pred CCeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccHHHH
Q ss_pred EEEEEEecCCeEEEEeecceEEEecccccccccccccccCccccccccccccchhhHHHHhhhhhccCCCcccCccccCC
Q psy7829 247 LTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQMDPVDENLFTLMDKDSDELFSERVWELKQDPLYTTEKWIPQP 326 (511)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~i~~~ 326 (511)
...+.+. +..+....-+.+.-...+-......+..+-.....++
T Consensus 81 ~~al~~~-----------GF~l~~~IiW~K~~~~~~~~~~~~~E~i~~~~k~k~~------------------------- 124 (227)
T PRK13699 81 MAAWKNA-----------GFSVVGHLVFTKNYTSKAAYVGYRHECAYILAKGRPA------------------------- 124 (227)
T ss_pred HHHHHHC-----------CCEEeeEEEEECCCCCCCCCCccceeEEEEEECCCCC-------------------------
Q ss_pred CCCCCCCceeeeccccccccCCCCCCCCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcC
Q psy7829 327 PGYTTPGEITTRDKYGRLVHGSAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEH 406 (511)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~ 406 (511)
......++.+............+-+.+...+++.. ...+|+.|||--||||..+....+.. -+.+|+|+
T Consensus 125 -----~~~~~~~~v~~~~~~~~~~hp~~kP~~l~~~~i~~---~s~~g~~vlDpf~Gsgtt~~aa~~~~---r~~~g~e~ 193 (227)
T PRK13699 125 -----LPQNPLPDVLGWKYSGNRHHPTEKPVTSLQPLIES---FTHPNAIVLDPFAGSGSTCVAALQSG---RRYIGIEL 193 (227)
T ss_pred -----cccccCCCcccccCCCCCCCCCCCcHHHHHHHHHH---hCCCCCEEEeCCCCCCHHHHHHHHcC---CCEEEEec
Q ss_pred CHHHHHHHHhhc
Q psy7829 407 MMDIAIESIANI 418 (511)
Q Consensus 407 ~~~~~~~~~~~~ 418 (511)
+++..+.+.+++
T Consensus 194 ~~~y~~~~~~r~ 205 (227)
T PRK13699 194 LEQYHRAGQQRL 205 (227)
T ss_pred CHHHHHHHHHHH
No 450
>KOG1596|consensus
Probab=97.07 E-value=0.0016 Score=58.56 Aligned_cols=101 Identities=20% Similarity=0.341 Sum_probs=68.4
Q ss_pred cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCC----HHHHHHHHhhccccccccccccc----cccccccchh
Q psy7829 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHM----MDIAIESIANISTNHIDLIANET----IEIIPHILDL 440 (511)
Q Consensus 369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~----~~~~~~~~~~~~~~~v~~i~~d~----~~~l~~~~d~ 440 (511)
+-+++|.+||-+|+++|..--..+..+||.+.|+++|-+ .+++..|.++-. -|-+++... ...+-.+.|.
T Consensus 152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtN--iiPIiEDArhP~KYRmlVgmVDv 229 (317)
T KOG1596|consen 152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTN--IIPIIEDARHPAKYRMLVGMVDV 229 (317)
T ss_pred eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCC--ceeeeccCCCchheeeeeeeEEE
Confidence 577899999999999999999999999999999999976 344444443322 133333221 2223346777
Q ss_pred hhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 441 CYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 441 i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
+|.++.+....- .+++.....|+++|+++..
T Consensus 230 IFaDvaqpdq~R-------ivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 230 IFADVAQPDQAR-------IVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred EeccCCCchhhh-------hhhhhhhhhhccCCeEEEE
Confidence 777776554222 1245556678999998765
No 451
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.06 E-value=0.0081 Score=56.17 Aligned_cols=117 Identities=24% Similarity=0.305 Sum_probs=69.2
Q ss_pred HHHHHHHHHhhcCCCC-CEEEEEcCCcc--HHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEE
Q psy7829 119 QIADAAENLKLHLVDG-AKVLDLGSGSG--YQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE 195 (511)
Q Consensus 119 ~~~~~~~~l~~~~~~~-~~vLDiG~G~G--~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~ 195 (511)
+..+.+..+. -..| ..+||||||-- ...-.+|+...|+++|+-+|.+|-.+..++..+.... .....++.
T Consensus 55 Fl~RaVr~la--~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~-----~g~t~~v~ 127 (267)
T PF04672_consen 55 FLRRAVRYLA--EEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP-----RGRTAYVQ 127 (267)
T ss_dssp HHHHHHHHHH--CTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T-----TSEEEEEE
T ss_pred HHHHHHHHHH--HhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC-----CccEEEEe
Confidence 4445555554 2224 36999999953 3567788888899999999999999999999887632 12389999
Q ss_pred ccCCCCC---C---CCCCcc-----EEEecCCCCchH---------HHHHhhcccCcEEEEEEccCC
Q psy7829 196 ADAREGY---L---PEAPYD-----VIYYGGCVSEVP---------SRVLNQLKKGGRILAPIGPMD 242 (511)
Q Consensus 196 ~d~~~~~---~---~~~~fD-----~I~~~~~~~~~~---------~~~~~~LkpgG~l~~~~~~~~ 242 (511)
+|+.+.- . ..+-+| .++....++++. ..+.+.|.||.+|+++..+..
T Consensus 128 aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 128 ADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp --TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 9987421 0 012233 355555555543 678999999999999876543
No 452
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.03 E-value=0.0037 Score=55.10 Aligned_cols=76 Identities=20% Similarity=0.230 Sum_probs=56.9
Q ss_pred CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---c-ccccccccccccccc---ccc--chhhh
Q psy7829 372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---S-TNHIDLIANETIEII---PHI--LDLCY 442 (511)
Q Consensus 372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~-~~~v~~i~~d~~~~l---~~~--~d~i~ 442 (511)
-.|.++||+-+|||.+++.+..+.. .+++.||.+....+...+|+ + ..++.++..|+...+ ... ||.++
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVf 119 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVF 119 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEE
Confidence 5799999999999999999998875 89999999976666555554 4 355777777766443 233 78888
Q ss_pred hcccCCc
Q psy7829 443 LNLHRGA 449 (511)
Q Consensus 443 ~~l~~~~ 449 (511)
.+.+...
T Consensus 120 lDPPy~~ 126 (187)
T COG0742 120 LDPPYAK 126 (187)
T ss_pred eCCCCcc
Confidence 7766553
No 453
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.02 E-value=0.0015 Score=55.84 Aligned_cols=47 Identities=30% Similarity=0.543 Sum_probs=38.4
Q ss_pred CCCCEEEEEeccccHHHHHHHHHh---CCCcEEEEEcCCHHHHHHHHhhc
Q psy7829 372 HRGAKVLEIGSGSGYLATLMAHLV---GPTGHVTGLEHMMDIAIESIANI 418 (511)
Q Consensus 372 ~~~~~vLdiG~G~G~~~~~la~~~---~~~~~v~~id~~~~~~~~~~~~~ 418 (511)
.+..+|+|+|||-||++..++..+ .++.+|++||.+++..+.+.+..
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~ 73 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRA 73 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHH
Confidence 578899999999999999999833 35689999999987777655443
No 454
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.00 E-value=0.0023 Score=59.91 Aligned_cols=104 Identities=19% Similarity=0.279 Sum_probs=62.5
Q ss_pred CCCCEEEEEcCCccHHHH-HHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCC-Cc---------C-C------------
Q psy7829 132 VDGAKVLDLGSGSGYQTC-VFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK-DL---------L-D------------ 187 (511)
Q Consensus 132 ~~~~~vLDiG~G~G~~~~-~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-~~---------~-~------------ 187 (511)
..|.++||||||+-.... .+++.+ ..++..|.++...+..++-++..+. .| + +
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f---~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~l 131 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWF---EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKL 131 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTE---EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhh---cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHH
Confidence 357789999999865433 223333 3599999999888877655543210 00 0 0
Q ss_pred CCCe-EEEEccCCCCCCCC------CCccEEEecCCCCc----------hHHHHHhhcccCcEEEEEE
Q psy7829 188 SGRV-RIVEADAREGYLPE------APYDVIYYGGCVSE----------VPSRVLNQLKKGGRILAPI 238 (511)
Q Consensus 188 ~~~v-~~~~~d~~~~~~~~------~~fD~I~~~~~~~~----------~~~~~~~~LkpgG~l~~~~ 238 (511)
...| +++.+|..+..+-. .+||+|++...++. ..+++.++|||||.|++..
T Consensus 132 R~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 132 RRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp HHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred HHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 0113 47888988643211 24999998876632 2378999999999999853
No 455
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.99 E-value=0.0046 Score=56.13 Aligned_cols=111 Identities=20% Similarity=0.251 Sum_probs=73.6
Q ss_pred CCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCC---HHHHHHHHhhcccccccccccccccccccc--chhhhhcccCC
Q psy7829 374 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHM---MDIAIESIANISTNHIDLIANETIEIIPHI--LDLCYLNLHRG 448 (511)
Q Consensus 374 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~---~~~~~~~~~~~~~~~v~~i~~d~~~~l~~~--~d~i~~~l~~~ 448 (511)
+.+++|||+|.|.=++.+|-. .|+.+|+-+|.. ....+.....++.+|++++++.+.+.-+.. +|.+.+.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~-~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsR---- 142 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIA-FPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSR---- 142 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHh-ccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEee----
Confidence 689999999999999999844 488899999976 566677888999999999988554433221 3332211
Q ss_pred cEEEEEcCCccHHHHHHHHHhCCCcEEEEh-----HHHHHHHHHHHHhcCC
Q psy7829 449 AKVLEIGSGSGYLATLMAHLVGPTGHVTGL-----EHMMDIAIESIANIST 494 (511)
Q Consensus 449 ~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~-----~~ml~~a~~~~~~~~~ 494 (511)
.+ +....++......++++|.++.. .+-+..+++.....+.
T Consensus 143 --Av---a~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~ 188 (215)
T COG0357 143 --AV---ASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGG 188 (215)
T ss_pred --hc---cchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcC
Confidence 11 22333444555667888887544 4444555555555543
No 456
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=96.97 E-value=0.0065 Score=57.23 Aligned_cols=104 Identities=25% Similarity=0.280 Sum_probs=69.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhc---cC--------------------------C
Q psy7829 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISK---GN--------------------------K 183 (511)
Q Consensus 133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~---~~--------------------------~ 183 (511)
...+||--|||.|.++..+|... -.+.|.|.|-.|+-..+-.+.. .+ +
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G---~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLG---YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhcc---ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 35689999999999999999984 3699999999886544432221 00 0
Q ss_pred ----C--cCCCCCeEEEEccCCCCCCCC---CCccEEEecCCC---Cch---HHHHHhhcccCcEEEEEEcc
Q psy7829 184 ----D--LLDSGRVRIVEADAREGYLPE---APYDVIYYGGCV---SEV---PSRVLNQLKKGGRILAPIGP 240 (511)
Q Consensus 184 ----~--~~~~~~v~~~~~d~~~~~~~~---~~fD~I~~~~~~---~~~---~~~~~~~LkpgG~l~~~~~~ 240 (511)
. .....++....||+.+.+... ++||+|+...-+ +.+ .+.+.++||||| +.+-+|+
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG-~WIN~GP 203 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGG-YWINFGP 203 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCC-EEEecCC
Confidence 0 001235777888887655443 789999765322 223 378999999999 4455554
No 457
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.95 E-value=0.0024 Score=58.02 Aligned_cols=97 Identities=27% Similarity=0.261 Sum_probs=68.3
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeE-EEEccCCCCCCC--CCCc
Q psy7829 132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVR-IVEADAREGYLP--EAPY 208 (511)
Q Consensus 132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~-~~~~d~~~~~~~--~~~f 208 (511)
.++..+||+|+.||.++..+.+.. ..+|+++|.....+..--++ .+++. +...|+....+. .+..
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~kLR~----------d~rV~~~E~tN~r~l~~~~~~~~~ 145 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWKLRN----------DPRVIVLERTNVRYLTPEDFTEKP 145 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHhHhc----------CCcEEEEecCChhhCCHHHcccCC
Confidence 478899999999999999999985 46899999987655432221 23443 334454422111 2467
Q ss_pred cEEEecCCCC---chHHHHHhhcccCcEEEEEEcc
Q psy7829 209 DVIYYGGCVS---EVPSRVLNQLKKGGRILAPIGP 240 (511)
Q Consensus 209 D~I~~~~~~~---~~~~~~~~~LkpgG~l~~~~~~ 240 (511)
|+|+++.++- .++..+...++|++.++..+-+
T Consensus 146 d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~LvKP 180 (245)
T COG1189 146 DLIVIDVSFISLKLILPALLLLLKDGGDLVLLVKP 180 (245)
T ss_pred CeEEEEeehhhHHHHHHHHHHhcCCCceEEEEecc
Confidence 8999887764 3557889999999999886654
No 458
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.94 E-value=0.0011 Score=64.80 Aligned_cols=44 Identities=18% Similarity=0.162 Sum_probs=34.1
Q ss_pred CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc
Q psy7829 373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI 418 (511)
Q Consensus 373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~ 418 (511)
++.+|||+|||-|.-..-+...- . .+++|+|++.+.++++.++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i-~~~vg~Dis~~si~ea~~Ry 105 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-I-KHYVGIDISEESIEEARERY 105 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHH
T ss_pred CCCeEEEecCCCchhHHHHHhcC-C-CEEEEEeCCHHHHHHHHHHH
Confidence 78999999999999777765542 2 89999999999999888877
No 459
>KOG3987|consensus
Probab=96.92 E-value=0.00025 Score=62.22 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=71.6
Q ss_pred ccchhHHHHHHHHHHhh-cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCe
Q psy7829 113 VMNAPNQIADAAENLKL-HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRV 191 (511)
Q Consensus 113 ~~~~p~~~~~~~~~l~~-~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v 191 (511)
.+-++...++++..=.. .-..+.++||+|+|.|-++..++..+. +|++.|.|..|....++. +.
T Consensus 91 FifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~kk------------~y 155 (288)
T KOG3987|consen 91 FIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKKK------------NY 155 (288)
T ss_pred EEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhhc------------CC
Confidence 34455555554432211 112456899999999999999998874 499999999998776543 22
Q ss_pred EEEEccCCCCCCCCCCccEEEecCCCC------chHHHHHhhccc-CcEEEEEEc
Q psy7829 192 RIVEADAREGYLPEAPYDVIYYGGCVS------EVPSRVLNQLKK-GGRILAPIG 239 (511)
Q Consensus 192 ~~~~~d~~~~~~~~~~fD~I~~~~~~~------~~~~~~~~~Lkp-gG~l~~~~~ 239 (511)
.++.. .+....+-+||+|.|-..+. .+++.++.+|+| .|++++...
T Consensus 156 nVl~~--~ew~~t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLV 208 (288)
T KOG3987|consen 156 NVLTE--IEWLQTDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALV 208 (288)
T ss_pred ceeee--hhhhhcCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEE
Confidence 22211 11112235699998765542 345889999999 899888643
No 460
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.89 E-value=0.0096 Score=57.55 Aligned_cols=87 Identities=15% Similarity=0.212 Sum_probs=64.5
Q ss_pred CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccccccchhhhhcccCCcE
Q psy7829 371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIPHILDLCYLNLHRGAK 450 (511)
Q Consensus 371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l~~~~d~i~~~l~~~~~ 450 (511)
+.+|.++||+||++|..|-.+.+.. .+|+|||..+ + +..-...++|..++.+.....+. .-+.++.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG---~~V~AVD~g~-l---~~~L~~~~~V~h~~~d~fr~~p~-------~~~vDwv 274 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRG---MFVTAVDNGP-M---AQSLMDTGQVEHLRADGFKFRPP-------RKNVDWL 274 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcC---CEEEEEechh-c---CHhhhCCCCEEEEeccCcccCCC-------CCCCCEE
Confidence 4689999999999999999998774 6999999543 1 12224456788888877766553 1245678
Q ss_pred EEEEcCCccHHHHHHHHHhCC
Q psy7829 451 VLEIGSGSGYLATLMAHLVGP 471 (511)
Q Consensus 451 vLD~~~g~g~~~~~l~~~l~~ 471 (511)
+.|+.|-+-.++..+.+-+..
T Consensus 275 VcDmve~P~rva~lm~~Wl~~ 295 (357)
T PRK11760 275 VCDMVEKPARVAELMAQWLVN 295 (357)
T ss_pred EEecccCHHHHHHHHHHHHhc
Confidence 889999988888877776633
No 461
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.85 E-value=0.0058 Score=59.34 Aligned_cols=94 Identities=18% Similarity=0.244 Sum_probs=69.7
Q ss_pred cCCCCCEEEEEcCC-ccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc-CCCCCCCCCC
Q psy7829 130 HLVDGAKVLDLGSG-SGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD-AREGYLPEAP 207 (511)
Q Consensus 130 ~~~~~~~vLDiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~ 207 (511)
.++||.+|+=+|+| .|..+..+|+..+ ++|+++|.+++..+.|++.-.. .++... ......-.+.
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGAd-----------~~i~~~~~~~~~~~~~~ 229 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGAD-----------HVINSSDSDALEAVKEI 229 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhCCc-----------EEEEcCCchhhHHhHhh
Confidence 36799999999987 4568889999874 7899999999999998875222 223322 1110011134
Q ss_pred ccEEEecCCCCchHHHHHhhcccCcEEEEE
Q psy7829 208 YDVIYYGGCVSEVPSRVLNQLKKGGRILAP 237 (511)
Q Consensus 208 fD~I~~~~~~~~~~~~~~~~LkpgG~l~~~ 237 (511)
||+|+...+ ..-.....+.|++||++++.
T Consensus 230 ~d~ii~tv~-~~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 230 ADAIIDTVG-PATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred CcEEEECCC-hhhHHHHHHHHhcCCEEEEE
Confidence 999999988 77788999999999999983
No 462
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.84 E-value=0.0054 Score=56.48 Aligned_cols=92 Identities=13% Similarity=0.047 Sum_probs=63.9
Q ss_pred HHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC
Q psy7829 121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE 200 (511)
Q Consensus 121 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 200 (511)
..+.+.+...+.+..+|+|||||.=-++....... ++..++|+|++..+++.....+...+ .+.++...|...
T Consensus 93 d~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~------~~~~~~v~Dl~~ 165 (251)
T PF07091_consen 93 DEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLG------VPHDARVRDLLS 165 (251)
T ss_dssp HHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-------CEEEEEE-TTT
T ss_pred HHHHHHHHhcCCCCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhC------CCcceeEeeeec
Confidence 34455554456678899999999988888776553 67899999999999999999888743 467888889876
Q ss_pred CCCCCCCccEEEecCCCCch
Q psy7829 201 GYLPEAPYDVIYYGGCVSEV 220 (511)
Q Consensus 201 ~~~~~~~fD~I~~~~~~~~~ 220 (511)
..+ ....|+.+.--.++.+
T Consensus 166 ~~~-~~~~DlaLllK~lp~l 184 (251)
T PF07091_consen 166 DPP-KEPADLALLLKTLPCL 184 (251)
T ss_dssp SHT-TSEESEEEEET-HHHH
T ss_pred cCC-CCCcchhhHHHHHHHH
Confidence 543 3679999986555433
No 463
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.83 E-value=0.012 Score=61.06 Aligned_cols=101 Identities=13% Similarity=0.024 Sum_probs=71.9
Q ss_pred CcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCC---CceEEEEeCCHHHHHHHHHHHhccCCCcCC
Q psy7829 111 AGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGP---TGKVIGVEHIPELIEASLRNISKGNKDLLD 187 (511)
Q Consensus 111 ~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~ 187 (511)
|...+...+...+++.+. ..+..+|+|-.||+|.+....++.++. +..++|.|+++.....|+.|.--+|. .
T Consensus 166 GEfyTP~~v~~liv~~l~--~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi---~ 240 (489)
T COG0286 166 GEFYTPREVSELIVELLD--PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGI---E 240 (489)
T ss_pred CccCChHHHHHHHHHHcC--CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCC---C
Confidence 333444446666666665 457779999999999988887777643 36799999999999999999877652 1
Q ss_pred CCCeEEEEccCCCCC-C----CCCCccEEEecCCC
Q psy7829 188 SGRVRIVEADAREGY-L----PEAPYDVIYYGGCV 217 (511)
Q Consensus 188 ~~~v~~~~~d~~~~~-~----~~~~fD~I~~~~~~ 217 (511)
. ++....+|-...+ . ..+.||.|++++++
T Consensus 241 ~-~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf 274 (489)
T COG0286 241 G-DANIRHGDTLSNPKHDDKDDKGKFDFVIANPPF 274 (489)
T ss_pred c-cccccccccccCCcccccCCccceeEEEeCCCC
Confidence 1 4556666654322 2 23679999999887
No 464
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.82 E-value=0.0046 Score=59.41 Aligned_cols=96 Identities=18% Similarity=0.268 Sum_probs=66.2
Q ss_pred HHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc--ccccccccccccccc
Q psy7829 358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST--NHIDLIANETIEIIP 435 (511)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~--~~v~~i~~d~~~~l~ 435 (511)
-....+++. +.+.++..++|.=+|.|..|..+++.++ +++|+|+|.+++.+..+.+++.. .++.+++++-.....
T Consensus 7 Vll~Evl~~--L~~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~ 83 (305)
T TIGR00006 7 VLLDEVVEG--LNIKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFE 83 (305)
T ss_pred hhHHHHHHh--cCcCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHH
Confidence 345566776 7778999999999999999999999884 49999999999999888777652 357777665333211
Q ss_pred ccchhhhhcccCCcEEEEEcCCc
Q psy7829 436 HILDLCYLNLHRGAKVLEIGSGS 458 (511)
Q Consensus 436 ~~~d~i~~~l~~~~~vLD~~~g~ 458 (511)
. +... ..-.-++.++|+|+.+
T Consensus 84 ~-l~~~-~~~~vDgIl~DLGvSS 104 (305)
T TIGR00006 84 H-LDEL-LVTKIDGILVDLGVSS 104 (305)
T ss_pred H-HHhc-CCCcccEEEEeccCCH
Confidence 1 1100 0012456677777654
No 465
>KOG2198|consensus
Probab=96.81 E-value=0.011 Score=57.12 Aligned_cols=104 Identities=15% Similarity=0.210 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCC---CcEEEEEcCCHHHHHH---HHhhccccccccccccc
Q psy7829 357 ERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGP---TGHVTGLEHMMDIAIE---SIANISTNHIDLIANET 430 (511)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~---~~~v~~id~~~~~~~~---~~~~~~~~~v~~i~~d~ 430 (511)
-.+++.++--..+.++++++|||+++.+|.-|+.+.+.+-+ .|.|++-|.+...... ....+...++.+...++
T Consensus 139 rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~ 218 (375)
T KOG2198|consen 139 RQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDA 218 (375)
T ss_pred hhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccc
Confidence 34455555444589999999999999999999877766521 3699999998655554 33444445554444432
Q ss_pred cccccccc--hhh-hhcccCCcEEEEEcC-CccHH
Q psy7829 431 IEIIPHIL--DLC-YLNLHRGAKVLEIGS-GSGYL 461 (511)
Q Consensus 431 ~~~l~~~~--d~i-~~~l~~~~~vLD~~~-g~g~~ 461 (511)
.. .+... +.- ......+...+|+.| |-|.+
T Consensus 219 ~~-~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~ 252 (375)
T KOG2198|consen 219 SL-FPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTL 252 (375)
T ss_pred ee-ccccccccCchhhhhhcceeEEecccCCCccc
Confidence 22 22111 111 122344556778888 34443
No 466
>KOG2671|consensus
Probab=96.80 E-value=0.0028 Score=60.25 Aligned_cols=81 Identities=20% Similarity=0.155 Sum_probs=62.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHH-------HHHHHHhccCCCcCCCCCeEEEEccCCCC-C
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIE-------ASLRNISKGNKDLLDSGRVRIVEADAREG-Y 202 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~-------~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~ 202 (511)
.++|+-|+|--.|||.+....|+.. +.|+|.||+-.++. ..+.|+++.|. ...-+.++.+|.... +
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FG---a~viGtDIDyr~vragrg~~~si~aNFkQYg~---~~~fldvl~~D~sn~~~ 279 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFG---AYVIGTDIDYRTVRAGRGEDESIKANFKQYGS---SSQFLDVLTADFSNPPL 279 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhc---ceeeccccchheeecccCCCcchhHhHHHhCC---cchhhheeeecccCcch
Confidence 7899999999999999988877753 46999999987776 35577777652 222367888998753 3
Q ss_pred CCCCCccEEEecCCC
Q psy7829 203 LPEAPYDVIYYGGCV 217 (511)
Q Consensus 203 ~~~~~fD~I~~~~~~ 217 (511)
.....||.|+|+++.
T Consensus 280 rsn~~fDaIvcDPPY 294 (421)
T KOG2671|consen 280 RSNLKFDAIVCDPPY 294 (421)
T ss_pred hhcceeeEEEeCCCc
Confidence 345679999999887
No 467
>KOG1499|consensus
Probab=96.79 E-value=0.0019 Score=62.00 Aligned_cols=61 Identities=23% Similarity=0.394 Sum_probs=52.5
Q ss_pred ccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh--HHHHHHHHHHHHhcCC-CceEEEechHHHH
Q psy7829 445 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL--EHMMDIAIESIANIST-NHIDLIANETIEI 507 (511)
Q Consensus 445 l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~--~~ml~~a~~~~~~~~~-~~i~~i~~d~~~~ 507 (511)
+-.+..|||+|||||.+++..++.- .-+|+++ ..|.+.|++.+..+++ +.|+++++.++++
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi 121 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDI 121 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhC--cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEE
Confidence 3567899999999999999999873 3589999 9999999999999999 5699999987654
No 468
>KOG4589|consensus
Probab=96.72 E-value=0.0045 Score=53.69 Aligned_cols=36 Identities=28% Similarity=0.502 Sum_probs=33.7
Q ss_pred CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcC
Q psy7829 371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEH 406 (511)
Q Consensus 371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~ 406 (511)
++|+++|||+||.+|..+-.+-+.++|+|.|.|||+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDl 102 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDL 102 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEee
Confidence 468999999999999999999999999999999995
No 469
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.68 E-value=0.0074 Score=60.24 Aligned_cols=103 Identities=22% Similarity=0.274 Sum_probs=76.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC-CCCCCccEE
Q psy7829 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY-LPEAPYDVI 211 (511)
Q Consensus 133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~I 211 (511)
.+.+|||.=+|||.=++..+.......+|+.-|+|+++++..++|++.++. ..+++++.+.|+.... .....||+|
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~---~~~~~~v~~~DAn~ll~~~~~~fD~I 125 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGL---EDERIEVSNMDANVLLYSRQERFDVI 125 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT----SGCCEEEEES-HHHHHCHSTT-EEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccc---cCceEEEehhhHHHHhhhccccCCEE
Confidence 456899999999999999999865556899999999999999999998872 2226899999987533 234789999
Q ss_pred EecCCC--CchHHHHHhhcccCcEEEEEE
Q psy7829 212 YYGGCV--SEVPSRVLNQLKKGGRILAPI 238 (511)
Q Consensus 212 ~~~~~~--~~~~~~~~~~LkpgG~l~~~~ 238 (511)
=.++-- ..+++.+.+.++.||.|.+..
T Consensus 126 DlDPfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 126 DLDPFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp EE--SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCCCCccHhHHHHHHHhhcCCEEEEec
Confidence 876432 235588999999999999853
No 470
>KOG1975|consensus
Probab=96.68 E-value=0.0044 Score=58.53 Aligned_cols=107 Identities=16% Similarity=0.126 Sum_probs=61.7
Q ss_pred cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---------cccccccccccccc-----c
Q psy7829 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---------TNHIDLIANETIEI-----I 434 (511)
Q Consensus 369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---------~~~v~~i~~d~~~~-----l 434 (511)
.-.++++.++|+|||-|.-.+.+-+.. . +.++++||....+++++++.. .-.+.|+.+|-... +
T Consensus 113 ~y~~~~~~~~~LgCGKGGDLlKw~kAg-I-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~ 190 (389)
T KOG1975|consen 113 LYTKRGDDVLDLGCGKGGDLLKWDKAG-I-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLL 190 (389)
T ss_pred HHhccccccceeccCCcccHhHhhhhc-c-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhc
Confidence 355789999999999999988887654 3 799999998666666555443 11245666652211 1
Q ss_pred ---cccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829 435 ---PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 435 ---~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~ 478 (511)
+..||.+-.++.-+-..-+- .-.-.....+++.|+|||.++|.
T Consensus 191 e~~dp~fDivScQF~~HYaFete-e~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 191 EFKDPRFDIVSCQFAFHYAFETE-ESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred cCCCCCcceeeeeeeEeeeeccH-HHHHHHHHHHHhhcCCCcEEEEe
Confidence 11133322221110000000 00111234567889999999999
No 471
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=96.68 E-value=0.0019 Score=66.02 Aligned_cols=72 Identities=19% Similarity=0.319 Sum_probs=43.4
Q ss_pred CCEEEEEeccccHHHHHHHHHh---CCCcEEEEEcCCHHHHHHH--H-hhcc-cccccccccccccc-ccccchhhhhcc
Q psy7829 374 GAKVLEIGSGSGYLATLMAHLV---GPTGHVTGLEHMMDIAIES--I-ANIS-TNHIDLIANETIEI-IPHILDLCYLNL 445 (511)
Q Consensus 374 ~~~vLdiG~G~G~~~~~la~~~---~~~~~v~~id~~~~~~~~~--~-~~~~-~~~v~~i~~d~~~~-l~~~~d~i~~~l 445 (511)
+..|+|||||+|.++...++.. +...+|+|||.++...... + +..+ .+.|+++++|..+. ++...|.+++.+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl 266 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL 266 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence 5789999999999986665432 2347999999986544332 2 2223 35689999886554 233556555543
No 472
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.67 E-value=0.0039 Score=55.84 Aligned_cols=39 Identities=18% Similarity=0.414 Sum_probs=35.1
Q ss_pred CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCH
Q psy7829 370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMM 408 (511)
Q Consensus 370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~ 408 (511)
-++++.+|+|+|+.+|..+-.+++.+++++.|+++|+.+
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p 80 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP 80 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc
Confidence 346899999999999999999999998888899999864
No 473
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=96.63 E-value=0.0024 Score=56.60 Aligned_cols=49 Identities=29% Similarity=0.338 Sum_probs=34.9
Q ss_pred CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc
Q psy7829 370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST 420 (511)
Q Consensus 370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~ 420 (511)
....+.+|||+|||+|..++.+|+.. ...+|+..|.++ .....+.|+..
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~ 90 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIEL 90 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHT
T ss_pred hhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHh
Confidence 45578999999999999999999884 238999999987 55555555543
No 474
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.56 E-value=0.011 Score=52.91 Aligned_cols=37 Identities=24% Similarity=0.454 Sum_probs=31.4
Q ss_pred CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHH
Q psy7829 373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMD 409 (511)
Q Consensus 373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~ 409 (511)
.+.+|||+||++|.++..+.+..++.++|+|+|+.+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 3489999999999999999988756799999998755
No 475
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.55 E-value=0.018 Score=51.78 Aligned_cols=99 Identities=15% Similarity=0.222 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCccHHHHHHHH---HhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC--------
Q psy7829 133 DGAKVLDLGSGSGYQTCVFAH---MVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG-------- 201 (511)
Q Consensus 133 ~~~~vLDiG~G~G~~~~~la~---~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-------- 201 (511)
+++.|+|+|.-.|+.+..+|. .+++.++|+|+|++-..... +..+... ..++|++++||..+.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp----~~~rI~~i~Gds~d~~~~~~v~~ 105 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHP----MSPRITFIQGDSIDPEIVDQVRE 105 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG--------TTEEEEES-SSSTHHHHTSGS
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhcc----ccCceEEEECCCCCHHHHHHHHH
Confidence 467899999999998877765 44567899999996433221 1122211 246899999998632
Q ss_pred CCCCCCccEEEecCC--CCchH---HHHHhhcccCcEEEEE
Q psy7829 202 YLPEAPYDVIYYGGC--VSEVP---SRVLNQLKKGGRILAP 237 (511)
Q Consensus 202 ~~~~~~fD~I~~~~~--~~~~~---~~~~~~LkpgG~l~~~ 237 (511)
........+|+.+.. ..++. +.....+++|+++++.
T Consensus 106 ~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 106 LASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp S----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEET
T ss_pred hhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEE
Confidence 111133456665543 23443 5577899999999883
No 476
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.54 E-value=0.0044 Score=55.69 Aligned_cols=81 Identities=22% Similarity=0.290 Sum_probs=56.9
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC---CCCCccEE
Q psy7829 135 AKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL---PEAPYDVI 211 (511)
Q Consensus 135 ~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~I 211 (511)
.++|||||=+......-...+ .|+.||+++. .-.+.+.|+.+-+. +.+.||+|
T Consensus 53 lrlLEVGals~~N~~s~~~~f----dvt~IDLns~--------------------~~~I~qqDFm~rplp~~~~e~FdvI 108 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWF----DVTRIDLNSQ--------------------HPGILQQDFMERPLPKNESEKFDVI 108 (219)
T ss_pred ceEEeecccCCCCcccccCce----eeEEeecCCC--------------------CCCceeeccccCCCCCCcccceeEE
Confidence 589999998766554433333 4999999762 12456677765322 35789999
Q ss_pred EecCCCCchH---------HHHHhhcccCcE-----EEEEEc
Q psy7829 212 YYGGCVSEVP---------SRVLNQLKKGGR-----ILAPIG 239 (511)
Q Consensus 212 ~~~~~~~~~~---------~~~~~~LkpgG~-----l~~~~~ 239 (511)
.++.++..++ .++.+.|+|+|. |++...
T Consensus 109 s~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP 150 (219)
T PF11968_consen 109 SLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLP 150 (219)
T ss_pred EEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeC
Confidence 9988876554 788999999999 666443
No 477
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.40 E-value=0.0025 Score=60.82 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=69.6
Q ss_pred CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccc-----ccccccccccccc-----ccchhh
Q psy7829 372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH-----IDLIANETIEIIP-----HILDLC 441 (511)
Q Consensus 372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~-----v~~i~~d~~~~l~-----~~~d~i 441 (511)
..|.+|||+-|-||.+++.++.. |. .+|++||.+...++.+++|+..++ ++++..|..+.+. ..+|.+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g-GA-~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~I 199 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG-GA-KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLI 199 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT-TE-SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHC-CC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEE
Confidence 46899999999999999987753 32 589999999888888888776554 4567777665543 234544
Q ss_pred hhcccC---CcEEEEEcCCccHHHHHHHHHhCCCcEEEEh--------HHHHHHHHHHHHh
Q psy7829 442 YLNLHR---GAKVLEIGSGSGYLATLMAHLVGPTGHVTGL--------EHMMDIAIESIAN 491 (511)
Q Consensus 442 ~~~l~~---~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~--------~~ml~~a~~~~~~ 491 (511)
..+++. +..- +.-+-..+...+.+.++|+|.++.. +.+++..++...+
T Consensus 200 IlDPPsF~k~~~~--~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a~~ 258 (286)
T PF10672_consen 200 ILDPPSFAKSKFD--LERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAARE 258 (286)
T ss_dssp EE--SSEESSTCE--HHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHHHH
T ss_pred EECCCCCCCCHHH--HHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhCcc
Confidence 444321 1111 1111122344455677999988765 4455555555543
No 478
>PHA01634 hypothetical protein
Probab=96.35 E-value=0.0068 Score=49.05 Aligned_cols=49 Identities=12% Similarity=0.005 Sum_probs=43.0
Q ss_pred CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccc
Q psy7829 373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHI 423 (511)
Q Consensus 373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v 423 (511)
.+.+|+|||.+.|..+++++.... .+|+++|.++...+...+++...+|
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GA--K~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGA--SFVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCc--cEEEEeccCHHHHHHHHHHhhhhee
Confidence 589999999999999999997764 7999999999999988888776654
No 479
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.32 E-value=0.0044 Score=61.76 Aligned_cols=61 Identities=16% Similarity=0.144 Sum_probs=47.5
Q ss_pred CEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc---cccccccccccccc
Q psy7829 375 AKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN---HIDLIANETIEIIP 435 (511)
Q Consensus 375 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~---~v~~i~~d~~~~l~ 435 (511)
-+|||+.||+|..++.+++..+.-.+|+++|++++.++...+|+..+ +++++++|+...+.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~ 109 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLR 109 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHH
Confidence 58999999999999999987521268999999988888777777644 46677777655543
No 480
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.26 E-value=0.0072 Score=59.27 Aligned_cols=122 Identities=19% Similarity=0.227 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHh------CCCcEEEEEcCCHHHHHHHHhhcc-----ccccc
Q psy7829 356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLV------GPTGHVTGLEHMMDIAIESIANIS-----TNHID 424 (511)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~------~~~~~v~~id~~~~~~~~~~~~~~-----~~~v~ 424 (511)
||..+.+++.. .+...++.+|+|-+||+|.+...+.+.+ .+..+++|+|+++..+..+.-|+- ..+..
T Consensus 30 TP~~i~~l~~~-~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~ 108 (311)
T PF02384_consen 30 TPREIVDLMVK-LLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNIN 108 (311)
T ss_dssp --HHHHHHHHH-HHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCE
T ss_pred hHHHHHHHHHh-hhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccc
Confidence 55555554443 2577788899999999999998887643 245899999999888877665543 22233
Q ss_pred cccccccccc----cccchhhhhcccCCcE-EE------EE-------cCCcc--HHHHHHHHHhCCCcEEEEh
Q psy7829 425 LIANETIEII----PHILDLCYLNLHRGAK-VL------EI-------GSGSG--YLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 425 ~i~~d~~~~l----~~~~d~i~~~l~~~~~-vL------D~-------~~g~g--~~~~~l~~~l~~~g~v~~~ 478 (511)
+..+|.+... ...+|.++.+++-+.. .- +. .-+.. .+.....+.|+++|++..+
T Consensus 109 i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~I 182 (311)
T PF02384_consen 109 IIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAII 182 (311)
T ss_dssp EEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEE
Confidence 4455543322 2346777776655544 10 00 01111 2344556778899987666
No 481
>KOG1500|consensus
Probab=96.24 E-value=0.01 Score=56.26 Aligned_cols=59 Identities=25% Similarity=0.377 Sum_probs=50.8
Q ss_pred CCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh--HHHHHHHHHHHHhcCC-CceEEEechHHHH
Q psy7829 447 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL--EHMMDIAIESIANIST-NHIDLIANETIEI 507 (511)
Q Consensus 447 ~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~--~~ml~~a~~~~~~~~~-~~i~~i~~d~~~~ 507 (511)
.+..++|+|||.|.++...+..- ..+|+++ ++|.+.|++.++.+.+ ++|++|.|-.+++
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdi 238 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDI 238 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC--cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccc
Confidence 46689999999999998887763 3589999 9999999999999988 8999999887764
No 482
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.20 E-value=0.048 Score=48.23 Aligned_cols=59 Identities=27% Similarity=0.396 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHhh-cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHH
Q psy7829 354 PSSERSIAHILDLCY-LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE 413 (511)
Q Consensus 354 ~~~~~~~~~~~~~~~-~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~ 413 (511)
|--.+..+.++.=+. +.+++|++||-+|+.+|...-..+..++ .|.++++|.++...+.
T Consensus 56 p~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~re 115 (231)
T COG1889 56 PRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRE 115 (231)
T ss_pred cchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHH
Confidence 334455555554333 6889999999999999999999999996 7999999988555443
No 483
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.16 E-value=0.037 Score=52.84 Aligned_cols=99 Identities=14% Similarity=0.201 Sum_probs=73.1
Q ss_pred CCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-------ccccccccccccccccc---cchhhhh
Q psy7829 374 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-------TNHIDLIANETIEIIPH---ILDLCYL 443 (511)
Q Consensus 374 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-------~~~v~~i~~d~~~~l~~---~~d~i~~ 443 (511)
..+||-||-|.|..+..+.+.. +-.+++.+|++++.++.+++-+. .++++++.+|+.+.+.. .+|.|..
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 3699999999999999999876 56899999999999998887665 25578888887777652 4666555
Q ss_pred cccCCcEEEEEcCCc----cHHHHHHHHHhCCCcEEEEh
Q psy7829 444 NLHRGAKVLEIGSGS----GYLATLMAHLVGPTGHVTGL 478 (511)
Q Consensus 444 ~l~~~~~vLD~~~g~----g~~~~~l~~~l~~~g~v~~~ 478 (511)
+...+ .|.+. ..+-....+.|+++|-++.-
T Consensus 156 D~tdp-----~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 156 DSTDP-----VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred cCCCC-----CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 54433 13333 34455566778998888766
No 484
>KOG1562|consensus
Probab=96.16 E-value=0.011 Score=55.14 Aligned_cols=104 Identities=21% Similarity=0.190 Sum_probs=79.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC--CCCCc
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL--PEAPY 208 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~f 208 (511)
....++||-||-|-|......+++ ..-..+.-+|++...++..++.+.....+ ...++|.++.||...... ..++|
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~g-y~~~~v~l~iGDG~~fl~~~~~~~~ 196 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACG-YEGKKVKLLIGDGFLFLEDLKENPF 196 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcc-cCCCceEEEeccHHHHHHHhccCCc
Confidence 346788999999999998888777 45567899999999999999988764322 346789999999864221 35899
Q ss_pred cEEEecCCCCch----------HHHHHhhcccCcEEEE
Q psy7829 209 DVIYYGGCVSEV----------PSRVLNQLKKGGRILA 236 (511)
Q Consensus 209 D~I~~~~~~~~~----------~~~~~~~LkpgG~l~~ 236 (511)
|+|+.+..-+.. ...+.+.||++|+++.
T Consensus 197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~ 234 (337)
T KOG1562|consen 197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCT 234 (337)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 999976544322 2578899999999987
No 485
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.15 E-value=0.015 Score=53.37 Aligned_cols=86 Identities=30% Similarity=0.524 Sum_probs=49.4
Q ss_pred CCCC--CEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCC-cC---CCCCeEEEEccCCCCCC-
Q psy7829 131 LVDG--AKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKD-LL---DSGRVRIVEADAREGYL- 203 (511)
Q Consensus 131 ~~~~--~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~---~~~~v~~~~~d~~~~~~- 203 (511)
++++ .+|||.-+|-|.-+..+|.. | ++|+++|.||-+....+.-++++..+ .. ...+++++.+|..+...
T Consensus 71 lk~~~~~~VLDaTaGLG~Da~vlA~~-G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~ 147 (234)
T PF04445_consen 71 LKPGMRPSVLDATAGLGRDAFVLASL-G--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQ 147 (234)
T ss_dssp -BTTB---EEETT-TTSHHHHHHHHH-T----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCC
T ss_pred CCCCCCCEEEECCCcchHHHHHHHcc-C--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhh
Confidence 4555 48999999999999999965 3 37999999998776665443322100 00 12479999999886443
Q ss_pred CCCCccEEEecCCCCc
Q psy7829 204 PEAPYDVIYYGGCVSE 219 (511)
Q Consensus 204 ~~~~fD~I~~~~~~~~ 219 (511)
+..+||+|+.++++++
T Consensus 148 ~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 148 PDNSFDVVYFDPMFPE 163 (234)
T ss_dssp HSS--SEEEE--S---
T ss_pred cCCCCCEEEECCCCCC
Confidence 3578999999999864
No 486
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.15 E-value=0.052 Score=54.15 Aligned_cols=97 Identities=23% Similarity=0.284 Sum_probs=68.6
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc-cCCC---CCCCCC
Q psy7829 132 VDGAKVLDLGSGS-GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA-DARE---GYLPEA 206 (511)
Q Consensus 132 ~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-d~~~---~~~~~~ 206 (511)
.++.+|+=+|||+ |.++..+++..+ ..+|+.+|.++..++.|++.... +.+..... +... ......
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g~--------~~~~~~~~~~~~~~~~~~t~g~ 237 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGGA--------DVVVNPSEDDAGAEILELTGGR 237 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCCC--------eEeecCccccHHHHHHHHhCCC
Confidence 4555999999998 888888888874 57899999999999999885322 11111111 1100 111123
Q ss_pred CccEEEecCCCCchHHHHHhhcccCcEEEEE
Q psy7829 207 PYDVIYYGGCVSEVPSRVLNQLKKGGRILAP 237 (511)
Q Consensus 207 ~fD~I~~~~~~~~~~~~~~~~LkpgG~l~~~ 237 (511)
.+|+++-..........+.+.++|||.+++.
T Consensus 238 g~D~vie~~G~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 238 GADVVIEAVGSPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred CCCEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence 6999998777666678999999999999884
No 487
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.09 E-value=0.009 Score=53.19 Aligned_cols=104 Identities=15% Similarity=0.093 Sum_probs=59.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHhcc-------------------CC---------
Q psy7829 133 DGAKVLDLGSGSGYQTCVFAHMVGP-TGKVIGVEHIPELIEASLRNISKG-------------------NK--------- 183 (511)
Q Consensus 133 ~~~~vLDiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~-------------------~~--------- 183 (511)
.+-.++|-|||+|++...+.-..+. -..|++.|+++++++.|++|+.-. +.
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 3458999999999988877665432 246999999999999999887421 00
Q ss_pred ------C--cC-CCCCeEEEEccCCCCC-----CCCCCccEEEecCCCC---------------chHHHHHhhcccCcEE
Q psy7829 184 ------D--LL-DSGRVRIVEADAREGY-----LPEAPYDVIYYGGCVS---------------EVPSRVLNQLKKGGRI 234 (511)
Q Consensus 184 ------~--~~-~~~~v~~~~~d~~~~~-----~~~~~fD~I~~~~~~~---------------~~~~~~~~~LkpgG~l 234 (511)
. -. ......+.+.|++++- ......|+|+.+.++- .++..+...|-+++++
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV 210 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVV 210 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EE
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEE
Confidence 0 00 1234667888887521 1223469999987762 2347888999444444
Q ss_pred EE
Q psy7829 235 LA 236 (511)
Q Consensus 235 ~~ 236 (511)
++
T Consensus 211 ~v 212 (246)
T PF11599_consen 211 AV 212 (246)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 488
>KOG0024|consensus
Probab=96.03 E-value=0.044 Score=52.20 Aligned_cols=97 Identities=20% Similarity=0.287 Sum_probs=72.1
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC-----C---CC
Q psy7829 131 LVDGAKVLDLGSGS-GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA-----R---EG 201 (511)
Q Consensus 131 ~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-----~---~~ 201 (511)
.+.|.+||-+|+|+ |..+...|+.+| ..+|+.+|+++..++.|++ +. .+.+....... . +.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~-~G--------a~~~~~~~~~~~~~~~~~~v~~ 236 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK-FG--------ATVTDPSSHKSSPQELAELVEK 236 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH-hC--------CeEEeeccccccHHHHHHHHHh
Confidence 67899999999997 888889999985 5789999999999999998 32 22222222211 0 11
Q ss_pred CCCCCCccEEEecCCCCchHHHHHhhcccCcEEEEE
Q psy7829 202 YLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAP 237 (511)
Q Consensus 202 ~~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~l~~~ 237 (511)
......+|+.+.....+...+.....+++||.+++.
T Consensus 237 ~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlv 272 (354)
T KOG0024|consen 237 ALGKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVLV 272 (354)
T ss_pred hccccCCCeEEEccCchHHHHHHHHHhccCCEEEEe
Confidence 112245899998888887788899999999997664
No 489
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.00 E-value=0.021 Score=51.30 Aligned_cols=124 Identities=16% Similarity=0.193 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHH---hCCCcEEEEEcCCHHHH-HHHHhhcc-ccccccccccc
Q psy7829 356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHL---VGPTGHVTGLEHMMDIA-IESIANIS-TNHIDLIANET 430 (511)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~---~~~~~~v~~id~~~~~~-~~~~~~~~-~~~v~~i~~d~ 430 (511)
.|.+...+-++ +---+.+.|+|+|+-.|..++++|.. .++.++|++||++.... +.+.+... .++|++++||.
T Consensus 17 ~P~Dm~~~qel--i~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds 94 (206)
T PF04989_consen 17 YPQDMVAYQEL--IWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDS 94 (206)
T ss_dssp -HHHHHHHHHH--HHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-S
T ss_pred CHHHHHHHHHH--HHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCC
Confidence 34555444443 22235788999999999999998864 35679999999975443 33333322 36799999875
Q ss_pred cccccccchhhhhcccCC---cEEEEEc---CCccHHHHHHHHHhCCCcEEEEhHHHHH
Q psy7829 431 IEIIPHILDLCYLNLHRG---AKVLEIG---SGSGYLATLMAHLVGPTGHVTGLEHMMD 483 (511)
Q Consensus 431 ~~~l~~~~d~i~~~l~~~---~~vLD~~---~g~g~~~~~l~~~l~~~g~v~~~~~ml~ 483 (511)
.+. ..++.+..-.+.+ -.++|-- +-.-.....++..+.+|+.++.-+..++
T Consensus 95 ~d~--~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~ 151 (206)
T PF04989_consen 95 IDP--EIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIE 151 (206)
T ss_dssp SST--HHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHH
T ss_pred CCH--HHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEecccc
Confidence 431 1122221111222 2334333 2222334456677888766666533333
No 490
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.00 E-value=0.047 Score=49.20 Aligned_cols=103 Identities=15% Similarity=0.156 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhh----cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEE
Q psy7829 118 NQIADAAENLKL----HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI 193 (511)
Q Consensus 118 ~~~~~~~~~l~~----~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~ 193 (511)
....++.++|.. ...++.++||||.|.-.+=-.+..+. -..+.+|.|+++.+++.|+.++..+.. ....|++
T Consensus 59 dYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~e-YgwrfvGseid~~sl~sA~~ii~~N~~---l~~~I~l 134 (292)
T COG3129 59 DYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHE-YGWRFVGSEIDSQSLSSAKAIISANPG---LERAIRL 134 (292)
T ss_pred HHHHHHHHHHHhcCCCCCcCceEEEeeccCccccccccccee-ecceeecCccCHHHHHHHHHHHHcCcc---hhhheeE
Confidence 355556666653 12356689999988654322222211 246799999999999999999887620 2223555
Q ss_pred EEccCC----CCCC-CCCCccEEEecCCCCchHHHH
Q psy7829 194 VEADAR----EGYL-PEAPYDVIYYGGCVSEVPSRV 224 (511)
Q Consensus 194 ~~~d~~----~~~~-~~~~fD~I~~~~~~~~~~~~~ 224 (511)
....-. .+.. ..+.||.++|+++++.-.+.+
T Consensus 135 r~qk~~~~if~giig~nE~yd~tlCNPPFh~s~~da 170 (292)
T COG3129 135 RRQKDSDAIFNGIIGKNERYDATLCNPPFHDSAADA 170 (292)
T ss_pred EeccCccccccccccccceeeeEecCCCcchhHHHH
Confidence 443211 1111 246799999999998776544
No 491
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.99 E-value=0.039 Score=54.23 Aligned_cols=99 Identities=18% Similarity=0.155 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhC---C----------------------------Cc---
Q psy7829 354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVG---P----------------------------TG--- 399 (511)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~---~----------------------------~~--- 399 (511)
|.-+-.++.++.+ ..-.++..++|-=||||.+.+.+|.... | ..
T Consensus 174 pLketLAaAil~l--agw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~ 251 (381)
T COG0116 174 PLKETLAAAILLL--AGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRG 251 (381)
T ss_pred CchHHHHHHHHHH--cCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhc
Confidence 4445555556665 6777888999999999999999997752 1 11
Q ss_pred ----EEEEEcCCHHHHHHHHhhccc----cccccccccccccccc--cchhhhhcccCCcEEEEE
Q psy7829 400 ----HVTGLEHMMDIAIESIANIST----NHIDLIANETIEIIPH--ILDLCYLNLHRGAKVLEI 454 (511)
Q Consensus 400 ----~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~~~l~~--~~d~i~~~l~~~~~vLD~ 454 (511)
.++|+|++..+++.|+.|... .-|+|.+.|....-+. ..+.+..|++-|.++-+-
T Consensus 252 ~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~ 316 (381)
T COG0116 252 KELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSE 316 (381)
T ss_pred CccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCCh
Confidence 478999998888877666552 3367888876554444 677888888888776533
No 492
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.92 E-value=0.033 Score=48.81 Aligned_cols=38 Identities=32% Similarity=0.619 Sum_probs=35.9
Q ss_pred cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcC
Q psy7829 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEH 406 (511)
Q Consensus 369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~ 406 (511)
..+++|.+|+|+=.|.||+|..++..++|+|.|+++-.
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p 81 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVP 81 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecc
Confidence 78999999999999999999999999999999999954
No 493
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.92 E-value=0.012 Score=56.48 Aligned_cols=98 Identities=14% Similarity=0.208 Sum_probs=59.8
Q ss_pred HHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc--cccccccccccccccccc
Q psy7829 360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS--TNHIDLIANETIEIIPHI 437 (511)
Q Consensus 360 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~--~~~v~~i~~d~~~~l~~~ 437 (511)
...+++. +...++..++|.=-|.|..|..+.+.+ ++++|+|+|.|++++..+.+++. .+++.+++++-.+ +...
T Consensus 9 l~Evl~~--L~~~~~g~~vD~T~G~GGHS~aiL~~~-~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~-l~~~ 84 (310)
T PF01795_consen 9 LKEVLEA--LNPKPGGIYVDCTFGGGGHSKAILEKL-PNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN-LDEY 84 (310)
T ss_dssp HHHHHHH--HT--TT-EEEETT-TTSHHHHHHHHT--TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG-HHHH
T ss_pred HHHHHHh--hCcCCCceEEeecCCcHHHHHHHHHhC-CCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH-HHHH
Confidence 4455666 677899999999999999999999888 44999999999999999988887 4567777664322 2222
Q ss_pred chhhhhcccCCcEEEEEcCCccHH
Q psy7829 438 LDLCYLNLHRGAKVLEIGSGSGYL 461 (511)
Q Consensus 438 ~d~i~~~l~~~~~vLD~~~g~g~~ 461 (511)
..........++.++|+|+.+-.+
T Consensus 85 l~~~~~~~~~dgiL~DLGvSS~Ql 108 (310)
T PF01795_consen 85 LKELNGINKVDGILFDLGVSSMQL 108 (310)
T ss_dssp HHHTTTTS-EEEEEEE-S--HHHH
T ss_pred HHHccCCCccCEEEEccccCHHHh
Confidence 111101124567888998754333
No 494
>KOG4058|consensus
Probab=95.86 E-value=0.036 Score=46.17 Aligned_cols=108 Identities=22% Similarity=0.255 Sum_probs=73.8
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829 119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA 198 (511)
Q Consensus 119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 198 (511)
..+.++.++. .++..+.+|+|+|.|.+....++.. -...+|+|+++-.+.+++-+.-+.| ...+..|..-|+
T Consensus 60 Qv~nVLSll~--~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysrl~a~R~g----~~k~trf~Rkdl 131 (199)
T KOG4058|consen 60 QVENVLSLLR--GNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSRLHAWRAG----CAKSTRFRRKDL 131 (199)
T ss_pred HHHHHHHHcc--CCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHHHHHHHHh----cccchhhhhhhh
Confidence 3445566665 4566789999999999998888875 2347899999999999988776665 455788888887
Q ss_pred CCCCCCCCCccEEEecCC---CCchHHHHHhhcccCcEEEE
Q psy7829 199 REGYLPEAPYDVIYYGGC---VSEVPSRVLNQLKKGGRILA 236 (511)
Q Consensus 199 ~~~~~~~~~fD~I~~~~~---~~~~~~~~~~~LkpgG~l~~ 236 (511)
..... ..|.-+++..+ ++.+-.++..-+..+-.++.
T Consensus 132 wK~dl--~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vva 170 (199)
T KOG4058|consen 132 WKVDL--RDYRNVVIFGAESVMPDLEDKLRTELPANTRVVA 170 (199)
T ss_pred hhccc--cccceEEEeehHHHHhhhHHHHHhhCcCCCeEEE
Confidence 65322 33444433332 23333566666777777765
No 495
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=95.84 E-value=0.084 Score=47.46 Aligned_cols=50 Identities=26% Similarity=0.329 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhhcCCCCCC-EEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHH
Q psy7829 357 ERSIAHILDLCYLNLHRGA-KVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDI 410 (511)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~ 410 (511)
+..+..++.. -+.... +|||||||||..+..+|+.+ |.-.....|.+...
T Consensus 11 k~pIl~vL~~---~l~~~~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~ 61 (204)
T PF06080_consen 11 KDPILEVLKQ---YLPDSGTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNL 61 (204)
T ss_pred HhHHHHHHHH---HhCccCceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHH
Confidence 3445555554 234444 69999999999999999999 77888888987554
No 496
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.80 E-value=0.0022 Score=51.74 Aligned_cols=58 Identities=24% Similarity=0.460 Sum_probs=15.9
Q ss_pred EEEeccccHHHHHHHHHhCCCc--EEEEEcCCHH--HHHHHHhhcc-cccccccccccccccc
Q psy7829 378 LEIGSGSGYLATLMAHLVGPTG--HVTGLEHMMD--IAIESIANIS-TNHIDLIANETIEIIP 435 (511)
Q Consensus 378 LdiG~G~G~~~~~la~~~~~~~--~v~~id~~~~--~~~~~~~~~~-~~~v~~i~~d~~~~l~ 435 (511)
||+||..|+.++.+++.+.+++ +++++|..+. ..++..++.+ ..++++++++..+.++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~ 63 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLP 63 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHH
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHH
Confidence 6999999999999998875554 7999999874 3333333333 3458888887765544
No 497
>KOG1253|consensus
Probab=95.70 E-value=0.013 Score=58.66 Aligned_cols=104 Identities=16% Similarity=0.166 Sum_probs=83.9
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC----CCCCC
Q psy7829 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG----YLPEA 206 (511)
Q Consensus 131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~----~~~~~ 206 (511)
..++.+|||.=|++|.-++..|+..+.-.+|++.|.++..++..++|++.++ ..+.++..+.|+... .....
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~----v~~ive~~~~DA~~lM~~~~~~~~ 182 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG----VEDIVEPHHSDANVLMYEHPMVAK 182 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC----chhhcccccchHHHHHHhcccccc
Confidence 4567899999999999999999998666789999999999999999998875 344577788887521 12236
Q ss_pred CccEEEecC--CCCchHHHHHhhcccCcEEEEEE
Q psy7829 207 PYDVIYYGG--CVSEVPSRVLNQLKKGGRILAPI 238 (511)
Q Consensus 207 ~fD~I~~~~--~~~~~~~~~~~~LkpgG~l~~~~ 238 (511)
.||+|-.++ ....+++.+.+.++.||.|++..
T Consensus 183 ~FDvIDLDPyGs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 183 FFDVIDLDPYGSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ccceEecCCCCCccHHHHHHHHHhhcCCEEEEEe
Confidence 799998874 33557799999999999999864
No 498
>PRK10742 putative methyltransferase; Provisional
Probab=95.64 E-value=0.018 Score=53.27 Aligned_cols=77 Identities=18% Similarity=0.191 Sum_probs=55.5
Q ss_pred cCCCCCC--EEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHH---HHhhc------cc---cccccccccccccc
Q psy7829 369 LNLHRGA--KVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE---SIANI------ST---NHIDLIANETIEII 434 (511)
Q Consensus 369 ~~~~~~~--~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~---~~~~~------~~---~~v~~i~~d~~~~l 434 (511)
..+++|. +|||+=+|+|..++.+|... +.|+++|.++..+.. +.++. +. .+++++++|..+.+
T Consensus 82 vglk~g~~p~VLD~TAGlG~Da~~las~G---~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L 158 (250)
T PRK10742 82 VGIKGDYLPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL 158 (250)
T ss_pred hCCCCCCCCEEEECCCCccHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHH
Confidence 5667877 99999999999999999875 779999999655553 33332 11 45778888876665
Q ss_pred c---ccchhhhhcccCC
Q psy7829 435 P---HILDLCYLNLHRG 448 (511)
Q Consensus 435 ~---~~~d~i~~~l~~~ 448 (511)
. ..+|.++.+....
T Consensus 159 ~~~~~~fDVVYlDPMfp 175 (250)
T PRK10742 159 TDITPRPQVVYLDPMFP 175 (250)
T ss_pred hhCCCCCcEEEECCCCC
Confidence 4 3477777665433
No 499
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.59 E-value=0.053 Score=52.63 Aligned_cols=99 Identities=20% Similarity=0.251 Sum_probs=76.2
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCccEEE
Q psy7829 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPYDVIY 212 (511)
Q Consensus 134 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I~ 212 (511)
..+|+|.=+|+|.=++.++...+ ..+|+.-|+||.+++.+++|+..+. ..+...+..|+..... ....||+|=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~-~~~v~lNDisp~Avelik~Nv~~N~-----~~~~~v~n~DAN~lm~~~~~~fd~ID 126 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETG-VVKVVLNDISPKAVELIKENVRLNS-----GEDAEVINKDANALLHELHRAFDVID 126 (380)
T ss_pred CeEEeecccccchhHhhhhhhcC-ccEEEEccCCHHHHHHHHHHHHhcC-----cccceeecchHHHHHHhcCCCccEEe
Confidence 67899999999999999999874 3489999999999999999999872 3345666677754222 236799997
Q ss_pred ecCCC--CchHHHHHhhcccCcEEEEEE
Q psy7829 213 YGGCV--SEVPSRVLNQLKKGGRILAPI 238 (511)
Q Consensus 213 ~~~~~--~~~~~~~~~~LkpgG~l~~~~ 238 (511)
+++-- -.+.+.+.+.++.||.+.+..
T Consensus 127 iDPFGSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 127 IDPFGSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred cCCCCCCchHHHHHHHHhhcCCEEEEEe
Confidence 65322 234578888999999998853
No 500
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=95.55 E-value=0.021 Score=53.66 Aligned_cols=118 Identities=15% Similarity=0.214 Sum_probs=76.8
Q ss_pred cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-------ccccccccccccccccc----c
Q psy7829 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-------TNHIDLIANETIEIIPH----I 437 (511)
Q Consensus 369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-------~~~v~~i~~d~~~~l~~----~ 437 (511)
+..+...+||=||-|.|..+..+.+.- +-.+|+.+|++++.++.+++-+. .++++++.+|+...+.. .
T Consensus 72 ~~~~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~ 150 (246)
T PF01564_consen 72 LLHPNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEK 150 (246)
T ss_dssp HHSSST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-
T ss_pred hcCCCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCc
Confidence 344578999999999999999887654 34799999999998888776544 35688888887766543 4
Q ss_pred chhhhhcccCCcEEEEEcCCc----cHHHHHHHHHhCCCcEEEEh-------HHHHHHHHHHHHhc
Q psy7829 438 LDLCYLNLHRGAKVLEIGSGS----GYLATLMAHLVGPTGHVTGL-------EHMMDIAIESIANI 492 (511)
Q Consensus 438 ~d~i~~~l~~~~~vLD~~~g~----g~~~~~l~~~l~~~g~v~~~-------~~ml~~a~~~~~~~ 492 (511)
+|.+..++.... +.+. -.+-..+.+.|+|+|-++.- ...+....+.++..
T Consensus 151 yDvIi~D~~dp~-----~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~ 211 (246)
T PF01564_consen 151 YDVIIVDLTDPD-----GPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSV 211 (246)
T ss_dssp EEEEEEESSSTT-----SCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTT
T ss_pred ccEEEEeCCCCC-----CCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHh
Confidence 555544443211 1222 24456677888998887653 45555555555543
Done!