RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7829
(511 letters)
>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate)
O-methyltransferase (PCMT).
Length = 210
Score = 181 bits (462), Expect = 2e-54
Identities = 81/206 (39%), Positives = 122/206 (59%), Gaps = 12/206 (5%)
Query: 67 DLVNHLRDIGKIRTERVAQAFYKVDRGNFANEE----PYQDVSASLGYAGVMNAPNQIAD 122
L+ +L++ G I +++VA+A VDR F E Y+D+ S+GY ++AP+ A
Sbjct: 5 ALIENLKNYGVIASDKVAEAMLAVDREEFVPESFKSYAYEDIPLSIGYGQTISAPHMHAM 64
Query: 123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGN 182
E L+L G +VL++GSGSGY T FA MVG G V+ +EHIPEL+E + RN+ K
Sbjct: 65 MLELLEL--KPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPELVEIARRNLEK-- 120
Query: 183 KDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMD 242
L V +V D R+G+ APYD I+ G E+P +++QLK+GGR++ P+GP +
Sbjct: 121 ---LGLENVIVVVGDGRQGWPEFAPYDAIHVGAAAPEIPEALIDQLKEGGRLVIPVGP-N 176
Query: 243 DFQKLTQIDRFHDNTLQKTDLFEVAY 268
Q L Q D+ +D ++ DL V +
Sbjct: 177 GNQVLQQFDKRNDGSVVIKDLEGVRF 202
Score = 71.2 bits (175), Expect = 3e-14
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 435 PHILDLC--YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI 492
PH+ + L L G +VLEIGSGSGYL A +VG G V +EH+ ++ + N+
Sbjct: 59 PHMHAMMLELLELKPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPELVEIARRNL 118
Query: 493 STNHID 498
++
Sbjct: 119 EKLGLE 124
Score = 69.7 bits (171), Expect = 1e-13
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 362 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN 421
H + L L L G +VLEIGSGSGYL A +VG G V +EH+ ++ + N+
Sbjct: 62 HAMMLELLELKPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPELVEIARRNLEKL 121
Query: 422 HID 424
++
Sbjct: 122 GLE 124
>gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate)
O-methyltransferase. This is an all-kingdom (but not
all species) full-length ortholog enzyme for repairing
aging proteins. Among the prokaryotes, the gene name is
pcm. Among eukaryotes, pimt [Protein fate, Protein
modification and repair].
Length = 215
Score = 151 bits (382), Expect = 8e-43
Identities = 67/198 (33%), Positives = 105/198 (53%), Gaps = 13/198 (6%)
Query: 68 LVNHLRDIGKIRTERVAQAFYKVDRGNFANEE----PYQDVSASLGYAGVMNAPNQIADA 123
L++ L + G I+++RV A V R F E Y D +GY ++AP+ +A
Sbjct: 10 LIDKLINEGYIKSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMM 69
Query: 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK 183
E L+L G KVL++G+GSGYQ V A +VG G V+ +E IPEL E + R + K
Sbjct: 70 TELLEL--KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK--- 124
Query: 184 DLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDD 243
L V ++ D +G+ P APYD IY ++P +++QLK+GG ++ P+G +
Sbjct: 125 --LGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAGPKIPEALIDQLKEGGILVMPVG--EY 180
Query: 244 FQKLTQIDRFHDNTLQKT 261
Q L + ++ + K
Sbjct: 181 LQVLKRAEKRGGEIIIKD 198
Score = 59.5 bits (144), Expect = 3e-10
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 427 ANETIEIIPHILDLC-YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIA 485
+TI + + L L G KVLEIG+GSGY A ++A +VG G V +E + ++A
Sbjct: 56 YGQTISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELA 115
Query: 486 IESIANIST 494
++ +
Sbjct: 116 EKAERRLRK 124
Score = 59.5 bits (144), Expect = 4e-10
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 368 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST 420
L L G KVLEIG+GSGY A ++A +VG G V +E + ++A ++ +
Sbjct: 72 LLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK 124
>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 209
Score = 131 bits (332), Expect = 1e-35
Identities = 73/205 (35%), Positives = 108/205 (52%), Gaps = 16/205 (7%)
Query: 68 LVNHLRDIGKIRTERVAQAFYKVDRGNFANEE----PYQDVSASLGYAGVMNAPNQIADA 123
LV LR G I ERV +AF V R F Y+D + +G ++AP+ +A
Sbjct: 6 LVERLRTEG-ITDERVLKAFLAVPRELFVPAAYKHLAYEDRALPIGCGQTISAPHMVARM 64
Query: 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK 183
+ L+L G +VL++G+GSGYQ V A +VG +V+ +E I EL E + RN+
Sbjct: 65 LQLLEL--KPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNL----- 114
Query: 184 DLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDD 243
+ L V + D +G+ EAPYD I EVP +L+QLK GGR++ P+G
Sbjct: 115 ETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPVGS-GP 173
Query: 244 FQKLTQIDRFHDNTLQKTDLFEVAY 268
Q+L +I + D ++ DLF V +
Sbjct: 174 AQRLLRITKDGDGNFERRDLFNVRF 198
Score = 53.0 bits (128), Expect = 5e-08
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIAN 428
L L G +VLEIG+GSGY A ++A LV G V +E IE +A + +++ +
Sbjct: 68 LELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIER-----IEELAEQARRNLETLGY 119
Query: 429 ETIEII 434
E + +
Sbjct: 120 ENVTVR 125
Score = 53.0 bits (128), Expect = 5e-08
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIAN 502
L L G +VLEIG+GSGY A ++A LV G V +E IE +A + +++ +
Sbjct: 68 LELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIER-----IEELAEQARRNLETLGY 119
Query: 503 ETIEII 508
E + +
Sbjct: 120 ENVTVR 125
>gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 212
Score = 127 bits (321), Expect = 5e-34
Identities = 68/205 (33%), Positives = 108/205 (52%), Gaps = 15/205 (7%)
Query: 68 LVNHLRDIGKIRTERVAQAFYKVDRGNF----ANEEPYQDVSASLGYAGVMNAPNQIADA 123
+ +R+ G I++++V A KV R F E Y D +GY ++A + +A
Sbjct: 10 IEELIRE-GYIKSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTISAIHMVAIM 68
Query: 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK 183
E L L +G KVL++G+GSGY V A +VG +GKV+ +E IPEL E + + + K
Sbjct: 69 CELLDLK--EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY 126
Query: 184 DLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDD 243
D V ++ D GY APYD IY ++P ++ QLK GG ++ P+G
Sbjct: 127 D-----NVEVIVGDGTLGYEENAPYDRIYVTAAGPDIPKPLIEQLKDGGIMVIPVG--SY 179
Query: 244 FQKLTQIDRFHDNTLQKTDLFEVAY 268
Q+L ++++ + + K L EVA+
Sbjct: 180 SQELIRVEKDNGK-IIKKKLGEVAF 203
Score = 52.3 bits (126), Expect = 9e-08
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIAN 428
L+L G KVLEIG+GSGY A ++A +VG +G V +E I +A + + +
Sbjct: 72 LDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIER-----IPELAEKAKKTLKKLGY 126
Query: 429 ETIEII 434
+ +E+I
Sbjct: 127 DNVEVI 132
Score = 52.3 bits (126), Expect = 9e-08
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIAN 502
L+L G KVLEIG+GSGY A ++A +VG +G V +E I +A + + +
Sbjct: 72 LDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIER-----IPELAEKAKKTLKKLGY 126
Query: 503 ETIEII 508
+ +E+I
Sbjct: 127 DNVEVI 132
>gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase;
Reviewed.
Length = 212
Score = 105 bits (264), Expect = 5e-26
Identities = 64/205 (31%), Positives = 100/205 (48%), Gaps = 17/205 (8%)
Query: 68 LVNHLRDIGKIRTERVAQAFYKVDRGNFANEE----PYQDVSASLGYAGVMNAPNQIADA 123
LV LR G I ERV +A R F E Y++ + +G ++ P +A
Sbjct: 12 LVLRLRAEG-ILDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYMVARM 70
Query: 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK 183
E L+L G +VL++G+GSGYQ V AH+V +V VE I L + R + +
Sbjct: 71 TELLEL--KPGDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQ--- 122
Query: 184 DLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDD 243
L V + D +G+ AP+D I E+P +L QLK+GG ++AP+G ++
Sbjct: 123 --LGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPEIPRALLEQLKEGGILVAPVGG-EE 179
Query: 244 FQKLTQIDRFHDNTLQKTDLFEVAY 268
Q LT++ + ++ L EV +
Sbjct: 180 QQLLTRVRK-RGGRFEREVLEEVRF 203
Score = 49.4 bits (119), Expect = 8e-07
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 14/82 (17%)
Query: 427 ANETIEIIPHI--LDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDI 484
+TI P++ L L G +VLEIG+GSGY A ++AHLV V +E + +
Sbjct: 57 CGQTISQ-PYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTL 112
Query: 485 AIE--------SIANISTNHID 498
E + N+S H D
Sbjct: 113 QWEAKRRLKQLGLHNVSVRHGD 134
Score = 49.0 bits (118), Expect = 1e-06
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 11/65 (16%)
Query: 368 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE--------SIANIS 419
L L G +VLEIG+GSGY A ++AHLV V +E + + E + N+S
Sbjct: 73 LLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVS 129
Query: 420 TNHID 424
H D
Sbjct: 130 VRHGD 134
>gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 205
Score = 91.8 bits (228), Expect = 2e-21
Identities = 60/189 (31%), Positives = 91/189 (48%), Gaps = 11/189 (5%)
Query: 68 LVNHLRDIGKIRTERVAQAFYKVDRGNFANEE----PYQDVSASLGYAGVMNAPNQIADA 123
LV L G I++ERV +A V R F E Y+D L ++AP+ +A
Sbjct: 5 LVEELVREGIIKSERVKKAMLSVPREEFVMPEYRMMAYEDRPLPLFAGATISAPHMVAMM 64
Query: 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK 183
E ++ G K+L++G+GSGYQ V A + GKV VE + EL + +NI +
Sbjct: 65 CELIEPR--PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIER--- 119
Query: 184 DLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDD 243
L G V + D + G AP+D I S +PS ++ QLK GG ++ P+
Sbjct: 120 -LGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIPSALVRQLKDGGVLVIPVEE-GV 177
Query: 244 FQKLTQIDR 252
Q L ++ +
Sbjct: 178 GQVLYKVVK 186
Score = 40.2 bits (94), Expect = 0.001
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 425 LIANETIEIIPHILD-LCYL-NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMM 482
L A TI PH++ +C L G K+LE+G+GSGY A + A + G V +E +
Sbjct: 49 LFAGATISA-PHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVK 107
Query: 483 DIAIESIANI 492
++AI + NI
Sbjct: 108 ELAIYAAQNI 117
Score = 38.3 bits (89), Expect = 0.005
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI 418
G K+LE+G+GSGY A + A + G V +E + ++AI + NI
Sbjct: 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNI 117
>gnl|CDD|234563 TIGR04364, methyltran_FxLD, methyltransferase, FxLD system.
Members of this family resemble occur regularly in the
vicinity of lantibiotic biosynthesis enzymes and their
probable target, the FxLD family of putative ribosomal
natural product precursor (TIGR04363). Members resemble
protein-L-isoaspartate O-methyltransferase (TIGR00080)
and a predicted methyltranserase, TIGR04188, of another
putative peptide modification system.
Length = 394
Score = 94.0 bits (234), Expect = 9e-21
Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 29/188 (15%)
Query: 67 DLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGV------------- 113
LV+ LR+ G IR+ RV AF V R FA P + A V
Sbjct: 7 ALVDELREDGVIRSPRVEAAFRTVPRHLFAPGAPLEKAYA--ANRAVVTKRDEDGAALSS 64
Query: 114 MNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEA 173
++AP+ A E + G +VL++GSG GY + A +VGP+G+V V+ ++ +
Sbjct: 65 VSAPHIQAMMLEQAGVE--PGMRVLEIGSG-GYNAALLAELVGPSGEVTTVDIDEDVTD- 120
Query: 174 SLRNISKGNKDLLDS---GRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKK 230
+ L + +V +V ADA G APYD I ++P L+QL
Sbjct: 121 -------RARACLAAAGYPQVTVVLADAEAGVPELAPYDRIIVTVGAWDIPPAWLDQLAP 173
Query: 231 GGRILAPI 238
GGR++ P+
Sbjct: 174 GGRLVVPL 181
Score = 47.4 bits (113), Expect = 1e-05
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 11/72 (15%)
Query: 335 ITTRDKYGRLVHG-SAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAH 393
+T RD+ G + SAP A +L+ + G +VLEIGSG GY A L+A
Sbjct: 52 VTKRDEDGAALSSVSAPH-------IQAMMLE--QAGVEPGMRVLEIGSG-GYNAALLAE 101
Query: 394 LVGPTGHVTGLE 405
LVGP+G VT ++
Sbjct: 102 LVGPSGEVTTVD 113
Score = 45.8 bits (109), Expect = 3e-05
Identities = 20/32 (62%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
Query: 448 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE 479
G +VLEIGSG GY A L+A LVGP+G VT ++
Sbjct: 83 GMRVLEIGSG-GYNAALLAELVGPSGEVTTVD 113
>gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 322
Score = 82.2 bits (203), Expect = 3e-17
Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 12/166 (7%)
Query: 80 TERVAQAFYKVDRGNFANEE-P----YQD-VSASLGYAGVMNAPNQIADAAENLK-LHLV 132
++ +A+AF +V R F + P Y+D V S + +Q + A ++ + L
Sbjct: 20 SDHIAKAFLEVPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVGLD 79
Query: 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVR 192
G +VL++G G+GY V + +VG G V+ VE+ ++ E + RN+ + L V
Sbjct: 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRR-----LGIENVI 134
Query: 193 IVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPI 238
V D G APYDVI+ V EVP QLK+GGR++ PI
Sbjct: 135 FVCGDGYYGVPEFAPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPI 180
Score = 43.7 bits (103), Expect = 1e-04
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 368 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEH 406
++ L +G +VLEIG G+GY A +M+ +VG G V +E+
Sbjct: 75 WVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEY 113
Score = 43.7 bits (103), Expect = 1e-04
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 442 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEH 480
++ L +G +VLEIG G+GY A +M+ +VG G V +E+
Sbjct: 75 WVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEY 113
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 65.4 bits (160), Expect = 3e-13
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 9/107 (8%)
Query: 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVR 192
GA+VLD+G G+G + + P +V GV+ PE++E + N R+
Sbjct: 1 PGARVLDIGCGTGS-LAIELARLFPGARVTGVDLSPEMLELARENAKLALGP-----RIT 54
Query: 193 IVEADAREGYLPEAPYDVIYYGGCVSEVP---SRVLNQLKKGGRILA 236
V+ DA + +D ++ GG ++ + + LK GGR++
Sbjct: 55 FVQGDAPDALDLLEGFDAVFIGGGGGDLLELLDALASLLKPGGRLVL 101
Score = 36.5 bits (85), Expect = 0.004
Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 22/101 (21%)
Query: 373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIANISTNHIDL---- 425
GA+VL+IG G+G LA + + P VTG++ M+++A E+ I
Sbjct: 1 PGARVLDIGCGTGSLA-IELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGD 59
Query: 426 --------------IANETIEIIPHILDLCYLNLHRGAKVL 452
+ +LD L G +++
Sbjct: 60 APDALDLLEGFDAVFIGGGGGDLLELLDALASLLKPGGRLV 100
Score = 36.5 bits (85), Expect = 0.005
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 447 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIANISTNHIDLI 500
GA+VL+IG G+G LA + + P VTG++ M+++A E+ I +
Sbjct: 1 PGARVLDIGCGTGSLA-IELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFV 56
>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].
Length = 187
Score = 61.1 bits (149), Expect = 7e-11
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
KL G ++ D+G+G+G T +A + GP+G+VI +E E +E RN ++
Sbjct: 29 KLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAAR-----FG 82
Query: 188 SGRVRIVEADAREGYLPEAPYDVIYYGGCVS--EVPSRVLNQLKKGGRILA 236
+ +VE DA E D I+ GG + E+ +LK GGR++A
Sbjct: 83 VDNLEVVEGDAPEALPDLPSPDAIFIGGGGNIEEILEAAWERLKPGGRLVA 133
Score = 35.3 bits (82), Expect = 0.041
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 351 DNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE 405
+ GP ++ I L L L G ++ +IG+G+G + A L GP+G V +E
Sbjct: 13 EGGPMTKEEI-RALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIE 65
Score = 34.1 bits (79), Expect = 0.087
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 437 ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE 479
L L L G ++ +IG+G+G + A L GP+G V +E
Sbjct: 24 ALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIE 65
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 57.4 bits (139), Expect = 3e-10
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE 195
+VLDLG G+G A GP +V GV+ P +E + + + D V +++
Sbjct: 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLAD-----NVEVLK 53
Query: 196 ADAREG-YLPEAPYDVIYYGG---CVSEVPSRVLNQ----LKKGGRILAPI 238
DA E + +DVI + E +R L + LK GG ++ +
Sbjct: 54 GDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLTL 104
Score = 33.6 bits (77), Expect = 0.048
Identities = 17/76 (22%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 376 KVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIANISTNHIDLI---ANE 429
+VL++G G+G LA +A G VTG++ +++A ++ A + ++++++ A E
Sbjct: 1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEE 58
Query: 430 TIEIIPHILDLCYLNL 445
D+ +
Sbjct: 59 LPPEADESFDVIISDP 74
Score = 32.4 bits (74), Expect = 0.12
Identities = 14/54 (25%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Query: 450 KVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIANISTNHIDLI 500
+VL++G G+G LA +A G VTG++ +++A ++ A + ++++++
Sbjct: 1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLADNVEVL 52
>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase;
Provisional.
Length = 198
Score = 58.7 bits (142), Expect = 5e-10
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
KL L G +LD+G G+G T + +VG TGKV V+ + I + RN K +L+
Sbjct: 35 KLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG--VLN 92
Query: 188 SGRVRIVEADAREGYLPEAP--YDVIYYGGCVSEVP---SRVLNQLKKGGRILA 236
+ +++ +A E L +D I+ GG ++ S +KKGGRI+
Sbjct: 93 --NIVLIKGEAPE-ILFTINEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVI 143
Score = 36.3 bits (84), Expect = 0.018
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 364 LDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEH---MMDIAIESIANIST 420
L L L L +G +L+IG G+G + + LVG TG V ++ +++ +
Sbjct: 31 LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV 90
Query: 421 -NHIDLIANETIEIIPHILD 439
N+I LI E EI+ I +
Sbjct: 91 LNNIVLIKGEAPEILFTINE 110
Score = 33.6 bits (77), Expect = 0.15
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 438 LDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE 479
L L L L +G +L+IG G+G + + LVG TG V ++
Sbjct: 31 LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVD 72
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This family
appears to be have methyltransferase activity.
Length = 151
Score = 54.4 bits (131), Expect = 6e-09
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 16/139 (11%)
Query: 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVR 192
G KVLDLG G+GY T + A +GP +V+G++ E IE +K N L V
Sbjct: 3 SGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIE-----KAKENAKKLGYENVE 57
Query: 193 IVEADARE---GYLPEAPYDVI------YYGGCVSEVPSRVLNQLKKGGRILA--PIGPM 241
++ D E L + +DV+ + +V ++ LK GG ++ P+
Sbjct: 58 FIQGDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVSDPVLLS 117
Query: 242 DDFQKLTQIDRFHDNTLQK 260
+ L ++R + L+
Sbjct: 118 ELPALLEDLERLYAGVLEG 136
Score = 44.4 bits (105), Expect = 2e-05
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH 422
L G KVL++G G+GYL ++A +GP V G++ + + AIE +
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGID-ISEEAIEKAKENAKKL 51
Score = 44.4 bits (105), Expect = 2e-05
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 445 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH 496
L G KVL++G G+GYL ++A +GP V G++ + + AIE +
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGID-ISEEAIEKAKENAKKL 51
>gnl|CDD|234492 TIGR04188, methyltr_grsp, methyltransferase, ATP-grasp peptide
maturase system. Members of this protein family are
predicted SAM-dependent methyltransferases that
regularly occur in the context of a putative peptide
modification ATP-grasp enzyme (TIGR04187, related to
enzymes of microviridin maturation) and a putative
ribosomal peptide modification target (TIGR04186).
Length = 363
Score = 56.6 bits (137), Expect = 1e-08
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
L + DG +VL++G+G+GY + H +G V VE P L + ++
Sbjct: 102 ALDVEDGHRVLEIGTGTGYSAALLCHRLG-DDNVTSVEVDPGLAARAASALA-------A 153
Query: 188 SG-RVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIG 239
+G +V D G+ P APYD I V VP L Q + GG IL +
Sbjct: 154 AGYAPTVVTGDGLLGHPPRAPYDRIIATCAVRRVPPAWLRQTRPGGVILTTLS 206
Score = 39.7 bits (93), Expect = 0.003
Identities = 17/37 (45%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE 405
L++ G +VLEIG+G+GY A L+ H +G +VT +E
Sbjct: 103 LDVEDGHRVLEIGTGTGYSAALLCHRLG-DDNVTSVE 138
Score = 39.7 bits (93), Expect = 0.003
Identities = 17/37 (45%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE 479
L++ G +VLEIG+G+GY A L+ H +G +VT +E
Sbjct: 103 LDVEDGHRVLEIGTGTGYSAALLCHRLG-DDNVTSVE 138
>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed.
Length = 272
Score = 55.3 bits (134), Expect = 2e-08
Identities = 35/93 (37%), Positives = 42/93 (45%), Gaps = 22/93 (23%)
Query: 103 DVSASLGY---------AGVMNA-----PNQIADAAENLKLHLVDGAKVLDLGSGSGYQT 148
D S SLGY G P +A LK G VLDLGSG G+
Sbjct: 41 DPSTSLGYSEEELAAVPEGANLGLGCGNPTALA----ELKP----GETVLDLGSGGGFDC 92
Query: 149 CVFAHMVGPTGKVIGVEHIPELIEASLRNISKG 181
+ A VGPTGKVIGV+ PE++ + N K
Sbjct: 93 FLAARRVGPTGKVIGVDMTPEMLAKARANARKA 125
Score = 40.7 bits (96), Expect = 0.001
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE 413
L G VL++GSG G+ L A VGPTG V G++ M +
Sbjct: 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVD-MTPEMLA 116
Score = 40.7 bits (96), Expect = 0.001
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 444 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE 487
L G VL++GSG G+ L A VGPTG V G++ M +
Sbjct: 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVD-MTPEMLA 116
>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and
related methyltransferases [Translation, ribosomal
structure and biogenesis].
Length = 256
Score = 55.0 bits (133), Expect = 2e-08
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
+L + G++VL+ G+GSG T A VGP G V E + + + N+S+ L D
Sbjct: 89 RLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF--GLGD 146
Query: 188 SGRVRIVEADAREGYLPEAPYDVI 211
RV + D REG E D +
Sbjct: 147 --RVTLKLGDVREGIDEE-DVDAV 167
Score = 47.3 bits (113), Expect = 6e-06
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS 419
+I+ L + G++VLE G+GSG L +A VGP GHVT E D A + N+S
Sbjct: 83 AGYIVA--RLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLS 140
Score = 46.9 bits (112), Expect = 1e-05
Identities = 23/52 (44%), Positives = 30/52 (57%)
Query: 442 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS 493
L + G++VLE G+GSG L +A VGP GHVT E D A + N+S
Sbjct: 89 RLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLS 140
>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase
(decarboxylating), CbiT subunit. This model recognizes
the CbiT methylase which is responsible, in part (along
with CbiE), for methylating precorrin-6y (or
cobalt-precorrin-6y) at both the 5 and 15 positions as
well as the concomitant decarbozylation at C-12. In many
organisms, this protein is fused to the CbiE subunit.
The fused protein, when found in organisms catalyzing
the oxidative version of the cobalamin biosynthesis
pathway, is called CobL [Biosynthesis of cofactors,
prosthetic groups, and carriers, Heme, porphyrin, and
cobalamin].
Length = 124
Score = 49.2 bits (118), Expect = 3e-07
Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 12/116 (10%)
Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
KL L G + D+G+G+G T A +V G+V +E PE +L I + N
Sbjct: 14 KLRLRPGDVLWDIGAGTGSVTIEAARLVPN-GRVYAIERNPE----ALDLIER-NLRRFG 67
Query: 188 SGRVRIVEADAREGY--LPEAPYDVIYYGGCVS---EVPSRVLNQLKKGGRILAPI 238
+ IVE DA E L P D ++ GG E+ V +L+ GGRI+
Sbjct: 68 VSNIVIVEGDAPEAPEDLLPDP-DAVFVGGSGGLLQEILEAVERRLRPGGRIVLNA 122
Score = 38.8 bits (91), Expect = 0.001
Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 6/102 (5%)
Query: 363 ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH 422
L L L L G + +IG+G+G + A LV G V +E E++ I N
Sbjct: 9 ALTLSKLRLRPGDVLWDIGAGTGSVTIEAARLVPN-GRVYAIER----NPEALDLIERNL 63
Query: 423 IDLIANETIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATL 464
+ I I+ +L + +G G L +
Sbjct: 64 RRFGVSN-IVIVEGDAPEAPEDLLPDPDAVFVGGSGGLLQEI 104
Score = 38.5 bits (90), Expect = 0.001
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 437 ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH 496
L L L L G + +IG+G+G + A LV G V +E E++ I N
Sbjct: 9 ALTLSKLRLRPGDVLWDIGAGTGSVTIEAARLVPN-GRVYAIER----NPEALDLIERNL 63
Query: 497 IDLIANETIEIIREF 511
+ I I+
Sbjct: 64 RRFGVSN-IVIVEGD 77
>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional.
Length = 241
Score = 48.8 bits (117), Expect = 2e-06
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDI 410
P R A +L L + G +VL++G G G A +A VGP G V G+ E M+ +
Sbjct: 2 PDFRRYRARTFEL--LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLAL 59
Query: 411 AIESIAN 417
A E A
Sbjct: 60 AKERAAG 66
Score = 48.4 bits (116), Expect = 3e-06
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 22/119 (18%)
Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
L + G +VLD+G G G A VGP G+V+G++ ++ + + + G
Sbjct: 15 LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALA-KERAAGL-----G 68
Query: 189 GRVRIVEADAREGYLPEAPYDVIYYGGCVS-------EVPSRVLNQ----LKKGGRILA 236
V V DA P+ +D S E P+R L + L+ GGR++
Sbjct: 69 PNVEFVRGDADGLPFPDGSFDA-----VRSDRVLQHLEDPARALAEIARVLRPGGRVVV 122
Score = 48.0 bits (115), Expect = 3e-06
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIAN 491
L + G +VL++G G G A +A VGP G V G+ E M+ +A E A
Sbjct: 15 LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG 66
>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 92
Score = 45.0 bits (107), Expect = 4e-06
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 19/104 (18%)
Query: 138 LDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD 197
LD+G G+G A G +V GV+ PE++ + + + V D
Sbjct: 1 LDVGCGTGLLAEALARRGG--ARVTGVDLSPEMLALARKR-----------APRKFVVGD 47
Query: 198 AREGYLPEAPYDVIYYGGCVSEV--PSRVLNQ----LKKGGRIL 235
A + P+ +DV+ + + P R L + LK GG+++
Sbjct: 48 AEDLPFPDESFDVVVSSLVLHHLPDPERALREIARVLKPGGKLV 91
Score = 31.1 bits (71), Expect = 0.29
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 378 LEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIP 435
L++G G+G LA +A G VTG+ D++ E +A E +P
Sbjct: 1 LDVGCGTGLLAEALARRGG--ARVTGV----DLSPEMLALARKRAPRKFVVGDAEDLP 52
Score = 30.7 bits (70), Expect = 0.36
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 452 LEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIA 485
L++G G+G LA +A G VTG+ M+ +A
Sbjct: 1 LDVGCGTGLLAEALARRGG--ARVTGVDLSPEMLALA 35
>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain. This family
contains methyltransferase domains.
Length = 117
Score = 45.5 bits (108), Expect = 5e-06
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI 193
G +VLD G+GSG + A GP +V+GVE PE + R ++ + RVR+
Sbjct: 1 GDRVLDPGAGSGA-FLLAAARAGPDARVVGVELDPEAAALARRRLAL----AGLAPRVRV 55
Query: 194 VEADARE-GYLPEAPYDVIY 212
V DARE LP+ +D++
Sbjct: 56 VVGDARELLELPDGSFDLVL 75
Score = 34.7 bits (80), Expect = 0.024
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 374 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE 405
G +VL+ G+GSG A GP V G+E
Sbjct: 1 GDRVLDPGAGSGAFLLAAARA-GPDARVVGVE 31
Score = 34.7 bits (80), Expect = 0.024
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 448 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE 479
G +VL+ G+GSG A GP V G+E
Sbjct: 1 GDRVLDPGAGSGAFLLAAARA-GPDARVVGVE 31
>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase.
MenG is a generic term for a methyltransferase that
catalyzes the last step in menaquinone biosynthesis; the
exact enzymatic activity differs for different MenG
because the menaquinone differ in their prenoid side
chains in different species. Members of this MenG
protein family are 2-heptaprenyl-1,4-naphthoquinone
methyltransferase, and are found together in operons
with the two subunits of the heptaprenyl diphosphate
synthase in Bacillus subtilis and related species
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 231
Score = 46.7 bits (111), Expect = 8e-06
Identities = 17/68 (25%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDL 425
+N+ G L++ G+ + +A VGP GHV GL E+M+ + + + + ++++L
Sbjct: 41 MNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVEL 100
Query: 426 IANETIEI 433
+ +E+
Sbjct: 101 VHGNAMEL 108
Score = 46.7 bits (111), Expect = 8e-06
Identities = 17/68 (25%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDL 499
+N+ G L++ G+ + +A VGP GHV GL E+M+ + + + + ++++L
Sbjct: 41 MNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVEL 100
Query: 500 IANETIEI 507
+ +E+
Sbjct: 101 VHGNAMEL 108
Score = 35.9 bits (83), Expect = 0.031
Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 6/106 (5%)
Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI 193
G LD+ G+ + A VGP G VIG++ ++ ++ + V +
Sbjct: 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLD-----FSENMLSVGRQKVKDAGLHNVEL 100
Query: 194 VEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIG 239
V +A E + +D + G + VP + L++ R++ P G
Sbjct: 101 VHGNAMELPFDDNSFDYVTIGFGLRNVPD-YMQVLREMYRVVKPGG 145
>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional.
Length = 188
Score = 44.1 bits (105), Expect = 4e-05
Identities = 39/138 (28%), Positives = 53/138 (38%), Gaps = 34/138 (24%)
Query: 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK 183
AEN G +VL++G+GSG V A KV+GV+ P +E + N N
Sbjct: 16 AENAVD--KKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNN- 69
Query: 184 DLLDSGRVRIVEADAREG--------------YLPEAPYDVI-------YYGG-CVSEVP 221
+ + V ++ +D E YLP + GG EV
Sbjct: 70 --IRNNGVEVIRSDLFEPFRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVI 127
Query: 222 SRVL----NQLKKGGRIL 235
R L LK GGRIL
Sbjct: 128 DRFLDEVGRYLKPGGRIL 145
Score = 34.5 bits (80), Expect = 0.060
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 12/65 (18%)
Query: 448 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIANISTNHIDLIANET 504
G +VLE+G+GSG +A + A V G++ + ++ A N N+I N
Sbjct: 24 GDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKC---NAKLNNIR---NNG 74
Query: 505 IEIIR 509
+E+IR
Sbjct: 75 VEVIR 79
Score = 33.3 bits (77), Expect = 0.18
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 374 GAKVLEIGSGSGYLATLMA 392
G +VLE+G+GSG +A + A
Sbjct: 24 GDRVLEVGTGSGIVAIVAA 42
>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family.
Length = 233
Score = 43.2 bits (102), Expect = 1e-04
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 15/110 (13%)
Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG--RV 191
G K LD+ G+G T + G +GKV+G++ +++ +G K + G +
Sbjct: 48 GNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLK-------EGEKKAKEEGKYNI 100
Query: 192 RIVEADAREGYLPEAPYDVIYYGGCVSEVPSR--VLNQ----LKKGGRIL 235
++ +A E + +D++ + P VL + LK GGR++
Sbjct: 101 EFLQGNAEELPFEDDSFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRVV 150
Score = 32.8 bits (75), Expect = 0.35
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDLI 426
RG K L++ G+G ++ G +G V GL E+M+ + +I+ +
Sbjct: 47 RGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKYNIEFL 103
Score = 32.8 bits (75), Expect = 0.35
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 447 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDLI 500
RG K L++ G+G ++ G +G V GL E+M+ + +I+ +
Sbjct: 47 RGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKYNIEFL 103
>gnl|CDD|201699 pfam01269, Fibrillarin, Fibrillarin.
Length = 229
Score = 42.9 bits (102), Expect = 1e-04
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 18/92 (19%)
Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIP----ELIEASLRNISKGNK 183
+ + G+KVL LG+ SG + +VGP G V VE P ELI N++K
Sbjct: 68 NIPIKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRELI-----NMAKKRP 122
Query: 184 DLLDSGRVRIVEADAR--EGYLPEAP-YDVIY 212
++ V I+E DAR + Y DVI+
Sbjct: 123 NI-----VPILE-DARHPQKYRMLVEMVDVIF 148
Score = 31.8 bits (73), Expect = 0.62
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEH 406
+ G+KVL +G+ SG + ++ +VGP G V +E
Sbjct: 71 IKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEF 106
Score = 31.8 bits (73), Expect = 0.62
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 445 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEH 480
+ G+KVL +G+ SG + ++ +VGP G V +E
Sbjct: 71 IKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEF 106
>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase,
release factor-specific. Members of this protein family
are HemK (PrmC), a protein once thought to be involved
in heme biosynthesis but now recognized to be a
protein-glutamine methyltransferase that modifies the
peptide chain release factors. All members of the seed
alignment are encoded next to the release factor 1 gene
(prfA) and confirmed by phylogenetic analysis. SIMBAL
analysis (manuscript in prep.) shows the motif
[LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers
specificity for the release factors rather than for
ribosomal protein L3 [Protein fate, Protein modification
and repair].
Length = 251
Score = 42.8 bits (102), Expect = 2e-04
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVR 192
+VLDLG+GSG A P +V V+ PE + +++ N L V
Sbjct: 87 GPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALA-----VARKNAARLGLDNVE 140
Query: 193 IVEADAREGYLPEAPYDVI 211
+++D E LP +D+I
Sbjct: 141 FLQSDWFEP-LPGGKFDLI 158
Score = 30.1 bits (69), Expect = 2.6
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 429 ETIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLA-TLMAHLVGPTGHVTGLEHMMDIAIE 487
ET E++ L+ +VL++G+GSG +A L P VT + DI+ E
Sbjct: 72 ETEELVEAALERL---KKGPLRVLDLGTGSGAIALALAKER--PDARVTAV----DISPE 122
Query: 488 SIA 490
++A
Sbjct: 123 ALA 125
Score = 28.6 bits (65), Expect = 6.4
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query: 354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLA-TLMAHLVGPTGHVTGLEHMMDIAI 412
P +E + L+ +VL++G+GSG +A L P VT + DI+
Sbjct: 71 PETEELVEAALERL---KKGPLRVLDLGTGSGAIALALAKER--PDARVTAV----DISP 121
Query: 413 ESIA 416
E++A
Sbjct: 122 EALA 125
>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis
methyltransferase; Reviewed.
Length = 239
Score = 42.4 bits (101), Expect = 3e-04
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIE-SIANISTNHID 424
L + G KVL++ G+G LA +A VG TG V GL E M+ + E + +++
Sbjct: 47 LGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVE 106
Query: 425 LIA 427
+
Sbjct: 107 FVQ 109
Score = 42.4 bits (101), Expect = 3e-04
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIE-SIANISTNHID 498
L + G KVL++ G+G LA +A VG TG V GL E M+ + E + +++
Sbjct: 47 LGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVE 106
Query: 499 LIA 501
+
Sbjct: 107 FVQ 109
Score = 39.4 bits (93), Expect = 0.002
Identities = 40/138 (28%), Positives = 54/138 (39%), Gaps = 40/138 (28%)
Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKG--------NKDL 185
G KVLDL G+G A VG TG+V+G++ S+G +DL
Sbjct: 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLD------------FSEGMLAVGREKLRDL 99
Query: 186 LDSGRVRIVEADAREGYLPEAPYDV--IYYG--------GCVSEVPSRVLNQLKKGGR-- 233
SG V V+ DA P+ +D I +G + E+ RV LK GGR
Sbjct: 100 GLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREM-YRV---LKPGGRLV 155
Query: 234 IL----APIGPMDDFQKL 247
IL P+
Sbjct: 156 ILEFSKPTNPPLKKAYDF 173
>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal
structure and biogenesis].
Length = 198
Score = 41.1 bits (97), Expect = 5e-04
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGR 190
++G VLDLG+G+G A + G + +V+ V+ PE +E + N + G
Sbjct: 43 DLEGKTVLDLGAGTGILAIGAALL-GAS-RVLAVDIDPEALEIARANAEELL------GD 94
Query: 191 VRIVEADAREGYLP 204
V V AD +
Sbjct: 95 VEFVVADVSDFRGK 108
>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function
prediction only].
Length = 219
Score = 41.2 bits (97), Expect = 6e-04
Identities = 17/88 (19%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLL 186
L L ++L++G+ GY A + G++ +E E E + N+++ +
Sbjct: 53 LLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG---V 109
Query: 187 DSGRVRIVEADAREGY--LPEAPYDVIY 212
D ++ DA + L + +D+++
Sbjct: 110 DDRIELLLGGDALDVLSRLLDGSFDLVF 137
Score = 31.5 bits (72), Expect = 0.78
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 331 TPGEITTRDKYGRLVHGSAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATL 390
P + +++ R + P + +L L L ++LEIG+ GY A
Sbjct: 24 PPALLAELEEFARE------NGVPIIDPETGALLRL-LARLSGPKRILEIGTAIGYSALW 76
Query: 391 MAHLVGPTGHVTGLEH 406
MA + G +T +E
Sbjct: 77 MALALPDDGRLTTIER 92
Score = 31.5 bits (72), Expect = 0.80
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 448 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEH 480
++LEIG+ GY A MA + G +T +E
Sbjct: 60 PKRILEIGTAIGYSALWMALALPDDGRLTTIER 92
>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 40.7 bits (96), Expect = 0.001
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 13/86 (15%)
Query: 418 ISTNHIDLIANETIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG 477
+S L I + L + G KVL++ G+G +A L+A VG G V G
Sbjct: 31 MSFGLHRLWRRALISL---------LGIKPGDKVLDVACGTGDMALLLAKSVGT-GEVVG 80
Query: 478 LEH---MMDIAIESIANISTNHIDLI 500
L+ M+++A E + +++ +
Sbjct: 81 LDISESMLEVAREKLKKKGVQNVEFV 106
Score = 40.3 bits (95), Expect = 0.001
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 20/112 (17%)
Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIE-ASLRNISKGNKDLLDSGRVR 192
G KVLD+ G+G + A VG G+V+G++ ++E A + KG ++ V
Sbjct: 52 GDKVLDVACGTGDMALLLAKSVGT-GEVVGLDISESMLEVAREKLKKKGVQN------VE 104
Query: 193 IVEADAREGYLPEAPYDVIYYGGCVSEVP---------SRVLNQLKKGGRIL 235
V DA P+ +D + + V RV LK GGR+L
Sbjct: 105 FVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRV---LKPGGRLL 153
Score = 39.9 bits (94), Expect = 0.002
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEH---MMDIAIESIANISTNHIDL 425
L + G KVL++ G+G +A L+A VG G V GL+ M+++A E + +++
Sbjct: 47 LGIKPGDKVLDVACGTGDMALLLAKSVGT-GEVVGLDISESMLEVAREKLKKKGVQNVEF 105
Query: 426 I 426
+
Sbjct: 106 V 106
>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors
[Translation, ribosomal structure and biogenesis].
Length = 280
Score = 40.4 bits (95), Expect = 0.001
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLL 186
L L L ++LDLG+GSG A GP +VI V+ P+ + + N +
Sbjct: 104 LALLLQLDKRILDLGTGSGAIAIALAKE-GPDAEVIAVDISPDALALARENA-----ERN 157
Query: 187 DSGRVRIVEADAREGYLPEAPYDVI 211
RV +V++D E +D+I
Sbjct: 158 GLVRVLVVQSDLFEPLRG--KFDLI 180
Score = 35.4 bits (82), Expect = 0.058
Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 15/95 (15%)
Query: 397 PTGHVTGLEHMMDIAIESIANISTNHIDLI-ANETIEIIPHILDLCYLNLHRGAKVLEIG 455
P ++ G + + + LI +T ++ L L L ++L++G
Sbjct: 68 PVAYILGSAEFGGLRFKVDEGV------LIPRPDTELLVEAALAL---LLQLDKRILDLG 118
Query: 456 SGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA 490
+GSG +A +A GP V + DI+ +++A
Sbjct: 119 TGSGAIAIALAK-EGPDAEVIAV----DISPDALA 148
Score = 29.2 bits (66), Expect = 4.2
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE 413
P +E + L L L ++L++G+GSG +A +A GP V + DI+ +
Sbjct: 94 PDTELLVEAALAL---LLQLDKRILDLGTGSGAIAIALAK-EGPDAEVIAV----DISPD 145
Query: 414 SIA 416
++A
Sbjct: 146 ALA 148
>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 154
Score = 38.2 bits (89), Expect = 0.003
Identities = 30/132 (22%), Positives = 43/132 (32%), Gaps = 38/132 (28%)
Query: 115 NAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTG-KVIGVEHIPELIEA 173
+A L L G +VLD+G G+G ++ G V GV
Sbjct: 4 QRERFLARLLARLLPRLKPGGRVLDIGCGTGI----LLRLLRERGFDVTGV--------- 50
Query: 174 SLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEV------PSRVLNQ 227
D + + DA + + YD+I EV P +L Q
Sbjct: 51 ----------DPSPAAVLIFSLFDAPDPAVLAGKYDLI----TAFEVLEHLPDPPALLQQ 96
Query: 228 ----LKKGGRIL 235
LK GG +L
Sbjct: 97 LRELLKPGGVLL 108
Score = 35.5 bits (82), Expect = 0.024
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 357 ERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIE 413
ER +A +L L G +VL+IG G+G L L+ G VTG++ + I
Sbjct: 6 ERFLARLLARLLPRLKPGGRVLDIGCGTGILLRLLRER-GF--DVTGVDPSPAAVLIFSL 62
Query: 414 SIANI---STNHIDLI-ANETIEIIPHILD 439
A DLI A E +E H+ D
Sbjct: 63 FDAPDPAVLAGKYDLITAFEVLE---HLPD 89
Score = 30.9 bits (70), Expect = 0.82
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 10/78 (12%)
Query: 436 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIANI 492
+L L G +VL+IG G+G L L+ G VTG++ + I A
Sbjct: 11 RLLARLLPRLKPGGRVLDIGCGTGILLRLLRER-GF--DVTGVDPSPAAVLIFSLFDAPD 67
Query: 493 ---STNHIDLI-ANETIE 506
DLI A E +E
Sbjct: 68 PAVLAGKYDLITAFEVLE 85
>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 97
Score = 36.6 bits (85), Expect = 0.004
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 12/106 (11%)
Query: 137 VLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG-RVRIVE 195
+LDLG G+G A V GV+ S + + L D G +VR V
Sbjct: 1 ILDLGCGTGRVLRALARAGPS--SVTGVD-------ISKEALELAKERLRDKGPKVRFVV 51
Query: 196 ADAREGYLPEAPYDVIY-YGGCVSEVPSRVLNQL-KKGGRILAPIG 239
ADAR+ E +D++ G + + + L L ++ R+L P G
Sbjct: 52 ADARDLPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 257
Score = 38.7 bits (87), Expect = 0.004
Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 14/146 (9%)
Query: 99 EPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPT 158
E Y ++ L ++ L L G VLD+G G+G + + A + G
Sbjct: 14 ELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLGVLDIGCGTG-RLALLARLGGRG 72
Query: 159 GKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVS 218
V+GV+ PE++ +++ + G V V ADA G LP +
Sbjct: 73 AYVVGVDLSPEMLA-----LARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLL 127
Query: 219 --------EVPSRVLNQLKKGGRILA 236
+ +L LK GGR++
Sbjct: 128 VLHLLPPAKALRELLRVLKPGGRLVL 153
Score = 34.1 bits (75), Expect = 0.14
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
Query: 404 LEHMMDIAIESIANISTNHIDLIANETIEIIPHILDLCYLNLHRGAK-VLEIGSGSGYLA 462
L + I + + +D E++ +L L L L G VL+IG G+G L
Sbjct: 4 LSAELLSRILELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLGVLDIGCGTGRL- 62
Query: 463 TLMAHLVGPTGHVTGLEH---MMDIAIESIANISTNHIDLIANETIEIIREF 511
L+A L G +V G++ M+ +A +D + + + + F
Sbjct: 63 ALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPF 114
Score = 33.3 bits (73), Expect = 0.22
Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 5/163 (3%)
Query: 339 DKYGRLVHGSAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPT 398
+ Y RL + E ++ L G VL+IG G+G L L+A L G
Sbjct: 14 ELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLGVLDIGCGTGRL-ALLARLGGRG 72
Query: 399 GHVTGLEH---MMDIAIESIANISTNHIDLIANETIEIIPHILDLCYLNLHRGAKVLEIG 455
+V G++ M+ +A +D + + + + D +L VL +
Sbjct: 73 AYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLHLL 132
Query: 456 SGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHID 498
+ L L+ L P G + + + D +E D
Sbjct: 133 PPAKALRELLRVLK-PGGRLVLSDLLRDGLLEGRLAALLGFGD 174
>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent
methyltransferase; Provisional.
Length = 275
Score = 38.2 bits (90), Expect = 0.006
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 13/86 (15%)
Query: 129 LHLVDGAKVLDLGSGSGYQTCV---FAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDL 185
L L + +VLDLG+GSG + A P +V V+ PE + + RN G
Sbjct: 104 LLLKEPLRVLDLGTGSG---AIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGA- 158
Query: 186 LDSGRVRIVEADAREGYLPEAPYDVI 211
RV ++ D E LP +D+I
Sbjct: 159 ----RVEFLQGDWFEP-LPGGRFDLI 179
>gnl|CDD|219979 pfam08704, GCD14, tRNA methyltransferase complex GCD14 subunit.
GCD14 is a subunit of the tRNA methyltransferase complex
and is required for 1-methyladenosine modification and
maturation of initiator methionyl-tRNA.
Length = 309
Score = 37.4 bits (87), Expect = 0.012
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 368 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHV 401
L L G+ V E G+GSG L+ +A V PTGH+
Sbjct: 97 MLELKPGSVVCESGTGSGSLSHAIARTVAPTGHL 130
Score = 37.4 bits (87), Expect = 0.012
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 442 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHV 475
L L G+ V E G+GSG L+ +A V PTGH+
Sbjct: 97 MLELKPGSVVCESGTGSGSLSHAIARTVAPTGHL 130
Score = 30.1 bits (68), Expect = 2.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVE 165
L L G+ V + G+GSG + A V PTG + E
Sbjct: 97 MLELKPGSVVCESGTGSGSLSHAIARTVAPTGHLYTFE 134
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional.
Length = 293
Score = 37.0 bits (86), Expect = 0.018
Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 32/106 (30%)
Query: 100 PYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTG 159
P++ A+ GV N + + G+KVL LG+ SG + +VGP G
Sbjct: 112 PFRSKLAAAIIGGVAN-------------IPIKPGSKVLYLGAASGTTVSHVSDLVGPEG 158
Query: 160 KVIGVE--HIP--ELIEASLR--NISKGNKDLLDSGRVRIVEADAR 199
V VE H +L + + NI V I+E DAR
Sbjct: 159 VVYAVEFSHRSGRDLTNMAKKRPNI------------VPIIE-DAR 191
Score = 32.4 bits (74), Expect = 0.48
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 374 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE 405
G+KVL +G+ SG + ++ LVGP G V +E
Sbjct: 133 GSKVLYLGAASGTTVSHVSDLVGPEGVVYAVE 164
Score = 32.4 bits (74), Expect = 0.48
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 448 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE 479
G+KVL +G+ SG + ++ LVGP G V +E
Sbjct: 133 GSKVLYLGAASGTTVSHVSDLVGPEGVVYAVE 164
>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 98
Score = 34.7 bits (80), Expect = 0.018
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 11/103 (10%)
Query: 138 LDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD 197
LD+G G+G P + GV+ P +EA+ ++ LLD+ RVR+ D
Sbjct: 1 LDIGCGTGTLLRALL-EALPGLEYTGVDISPAALEAAAERLAA--LGLLDAVRVRLDVLD 57
Query: 198 AREGYLPEAPYDVIYYGGCVS--EVPSRVLNQ----LKKGGRI 234
A + L +DV+ + P VL LK GG +
Sbjct: 58 AID--LDPGSFDVVVASNVLHHLADPRAVLRNLRRLLKPGGVL 98
Score = 28.1 bits (63), Expect = 3.8
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 452 LEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDLIANETIEII 508
L+IG G+G L + P TG+ ++ A E +A + + + ++ I
Sbjct: 1 LDIGCGTGTLLRALLEA-LPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAI 59
Query: 509 RE 510
Sbjct: 60 DL 61
Score = 28.1 bits (63), Expect = 3.8
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 378 LEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDLIANETIEII 434
L+IG G+G L + P TG+ ++ A E +A + + + ++ I
Sbjct: 1 LDIGCGTGTLLRALLEA-LPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAI 59
>gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA
(uracil-5-)-methyltransferase [Translation, ribosomal
structure and biogenesis].
Length = 432
Score = 36.9 bits (86), Expect = 0.022
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 136 KVLDLGSGSGYQTCVFA-HMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIV 194
+VLDL G G F + KV GVE PE +EA+ N + D V +
Sbjct: 296 RVLDLYCGVG----TFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGID-----NVEFI 346
Query: 195 EADARE 200
DA E
Sbjct: 347 AGDAEE 352
>gnl|CDD|222236 pfam13578, Methyltransf_24, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 105
Score = 34.6 bits (80), Expect = 0.025
Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 22/117 (18%)
Query: 138 LDLGSGSGYQTCVFAHMVGP--TGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE 195
+++G SG T A + G++ ++ P + N+ K RVR++
Sbjct: 1 VEIGVYSGVSTLWLAQALKDNGLGRLYSIDPWPG--AEAGANLRKAGLA----DRVRLLR 54
Query: 196 ADARE--GYLPEAPYDVIY------YGGCVSEVPSRVLNQLKKGGRILAPIGPMDDF 244
D+ E LP+ D+++ Y ++++ L L GG I+ D
Sbjct: 55 GDSLEALARLPDGSIDLLFIDGDHTYEAVLADLEL-WLPLLAPGGIIV-----FHDI 105
Score = 28.0 bits (63), Expect = 4.8
Identities = 10/66 (15%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 378 LEIGSGSGYLATLMAHLVGP--TGHVTGLEHMMDIAIESIANIS--TNHIDLIANETIEI 433
+EIG SG +A + G + ++ + + + + L+ +++E
Sbjct: 1 VEIGVYSGVSTLWLAQALKDNGLGRLYSIDPWPGAEAGANLRKAGLADRVRLLRGDSLEA 60
Query: 434 IPHILD 439
+ + D
Sbjct: 61 LARLPD 66
>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis
methyltransferases. This model represents a family of
methyltransferases involved in the biosynthesis of
menaquinone and ubiqinone. Some members such as the UbiE
enzyme from E. coli are believed to act in both
pathways, while others may act in only the menaquinone
pathway. These methyltransferases are members of the
UbiE/CoQ family of methyltransferases (pfam01209) which
also contains ubiquinone methyltransferases and other
methyltransferases. Members of this clade include a wide
distribution of bacteria and eukaryotes, but no archaea.
An outgroup for this clade is provided by the
phosphatidylethanolamine methyltransferase (EC 2.1.1.17)
from Rhodobacter sphaeroides. Note that a number of
non-orthologous genes which are members of pfam03737
have been erroneously annotated as MenG
methyltransferases [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 223
Score = 36.1 bits (84), Expect = 0.025
Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 21/112 (18%)
Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI 193
G KVLD+ G+G A GKV GV+ E++E K +
Sbjct: 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEV-------AKKKSELPLNIEF 92
Query: 194 VEADAREGYLPEAPYDVI----------YYGGCVSEVPSRVLNQLKKGGRIL 235
++ADA + +D + + E+ RV LK GGR++
Sbjct: 93 IQADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREM-YRV---LKPGGRLV 140
Score = 34.9 bits (81), Expect = 0.063
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAI---ESIANIS 419
+G KVL++ G+G LA +A G VTG+ M+++A E NI
Sbjct: 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIE 91
Score = 34.9 bits (81), Expect = 0.063
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 446 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAI---ESIANIS 493
+G KVL++ G+G LA +A G VTG+ M+++A E NI
Sbjct: 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIE 91
>gnl|CDD|217086 pfam02527, GidB, rRNA small subunit methyltransferase G. This is a
family of bacterial glucose inhibited division proteins
these are probably involved in the regulation of cell
devision. GidB has been shown to be a methyltransferase
G specific to the rRNA small subunit. Previously
identified as a glucose-inhibited division protein B
that appears to be present and in a single copy in all
complete eubacterial genomes so far sequenced. GidB
specifically methylates the N7 position of a guanosine
in 16S rRNA.
Length = 184
Score = 35.3 bits (82), Expect = 0.036
Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 13/108 (12%)
Query: 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNIS--KGNKDLLDSGR 190
KV D+GSG+G+ A + P K+ L+E+ L+ I+ + K L+
Sbjct: 48 IRIKVADVGSGAGFPGIPLA-IAFPDKKLT-------LLESLLKKINFLEELKKELNLEN 99
Query: 191 VRIVEADAREGYLPEAPYDVIYYG--GCVSEVPSRVLNQLKKGGRILA 236
V IV A A E Y E YDVI ++E+ L LK GG LA
Sbjct: 100 VTIVHARA-EEYQHEEQYDVITSRAVASLNELTEWALPLLKPGGYFLA 146
>gnl|CDD|227135 COG4798, COG4798, Predicted methyltransferase [General function
prediction only].
Length = 238
Score = 35.6 bits (82), Expect = 0.037
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGV 164
GA V+DL G GY T +F+ VGP GKV
Sbjct: 49 GATVIDLIPGGGYFTRIFSPAVGPKGKVYAY 79
Score = 31.3 bits (71), Expect = 0.97
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 366 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG 403
L + L GA V+++ G GY + + VGP G V
Sbjct: 41 LAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYA 78
Score = 31.3 bits (71), Expect = 0.97
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG 477
L + L GA V+++ G GY + + VGP G V
Sbjct: 41 LAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYA 78
>gnl|CDD|211555 TIGR00138, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase
GidB. GidB (glucose-inhibited division protein B)
appears to be present and in a single copy in nearly all
complete eubacterial genomes. It is missing only from
some obligate intracellular species of various lineages
(Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera,
etc.). GidB shows a methytransferase fold in its the
crystal structure, and acts as a 7-methylguanosine
(m(7)G) methyltransferase, apparently specific to 16S
rRNA [Protein synthesis, tRNA and rRNA base
modification].
Length = 181
Score = 34.9 bits (81), Expect = 0.047
Identities = 37/150 (24%), Positives = 61/150 (40%), Gaps = 15/150 (10%)
Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNIS--KGNKDLL 186
L +DG +V+D+GSG+G+ A + P K+ L+E++ + ++ + K L
Sbjct: 38 LEYLDGKRVIDIGSGAGFPGIPLA-IARPELKLT-------LLESNHKKVAFLREVKAEL 89
Query: 187 DSGRVRIVEADAREGYLPEAPYDVIYYG--GCVSEVPSRVLNQLKKGGRILAPIGPMDDF 244
V IV A E + E +D+I ++ + LN LK GG LA G
Sbjct: 90 GLNNVEIVNGRA-EDFQHEEQFDIITSRALASLNVLLELTLNLLKVGGYFLAYKGK-KYL 147
Query: 245 QKLTQIDRFHDNTLQKTDLFEVAYDAIMRK 274
++ + R L L R
Sbjct: 148 DEIEEAKR-KCQVLGVEPLEVPPLTGPDRH 176
Score = 30.7 bits (70), Expect = 1.2
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 423 IDLIANETIEII--PHILD-LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE 479
+L + +T E I HILD L L G +V++IGSG+G+ +A + P +T LE
Sbjct: 15 FNLTSIKTPEEIWERHILDSLALLEYLDGKRVIDIGSGAGFPGIPLA-IARPELKLTLLE 73
>gnl|CDD|215900 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase.
Length = 254
Score = 35.3 bits (82), Expect = 0.053
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 15/88 (17%)
Query: 118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
N+I D K +L + VL++G G G T A +V+ +E P L +
Sbjct: 19 NRIVD-----KANLQESDTVLEIGPGKGALTTELAKRA---KQVVAIEIDPRLAKRL--- 67
Query: 178 ISKGNKDLLDSGRVRIVEADAREGYLPE 205
+ L V +V D + P+
Sbjct: 68 ----QEKLALHPNVEVVHQDFLKFSFPK 91
Score = 29.5 bits (67), Expect = 3.8
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE 405
I I+D NL VLEIG G G L T +A V +E
Sbjct: 18 INRIVDK--ANLQESDTVLEIGPGKGALTTELAKRA---KQVVAIE 58
Score = 29.2 bits (66), Expect = 4.3
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 433 IIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE 479
+I I+D NL VLEIG G G L T +A V +E
Sbjct: 17 VINRIVDK--ANLQESDTVLEIGPGKGALTTELAKRA---KQVVAIE 58
>gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase.
Length = 261
Score = 35.3 bits (81), Expect = 0.055
Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPE-LIEASLRNISKGNKDLLDSGRVR 192
G +VLDL GSG + + VG GKV+G++ E L A+ R K + +
Sbjct: 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKN---IE 130
Query: 193 IVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMD--DFQKLTQ 249
+E DA + + +D I G + V R L +++ R+L P + DF K TQ
Sbjct: 131 WIEGDATDLPFDDCYFDAITMGYGLRNVVDR-LKAMQEMYRVLKPGSRVSILDFNKSTQ 188
Score = 32.9 bits (75), Expect = 0.28
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST 420
G +VL++ GSG LA L++ VG G V GL D + E +A ++
Sbjct: 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGL----DFSSEQLAVAAS 116
Score = 32.9 bits (75), Expect = 0.28
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 447 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST 494
G +VL++ GSG LA L++ VG G V GL D + E +A ++
Sbjct: 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGL----DFSSEQLAVAAS 116
>gnl|CDD|181354 PRK08287, PRK08287, cobalt-precorrin-6Y C(15)-methyltransferase;
Validated.
Length = 187
Score = 34.6 bits (80), Expect = 0.061
Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 27/137 (19%)
Query: 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA-NISTNHIDLIA 427
L LHR ++++G+G+G ++ + A L P+ VT +E D A+ I N
Sbjct: 27 LELHRAKHLIDVGAGTGSVS-IEAALQFPSLQVTAIERNPD-ALRLIKENR--QRFGC-- 80
Query: 428 NETIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATL----MAHLVGPTGHV-------- 475
I+IIP + L A + IG G L + +AHL P G +
Sbjct: 81 -GNIDIIPGEAP---IELPGKADAIFIGGSGGNLTAIIDWSLAHLH-PGGRLVLTFILLE 135
Query: 476 ---TGLEHMMDIAIESI 489
+ L H+ + +
Sbjct: 136 NLHSALAHLEKCGVSEL 152
Score = 33.8 bits (78), Expect = 0.097
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 17/113 (15%)
Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
KL L ++D+G+G+G + A + P+ +V +E P+ + N +
Sbjct: 26 KLELHRAKHLIDVGAGTG-SVSIEAALQFPSLQVTAIERNPDALRLIKENRQR-----FG 79
Query: 188 SGRVRIVEADAREGYLP---EAPYDVIYYGGC---VSEVPSRVLNQLKKGGRI 234
G + I+ G P D I+ GG ++ + L L GGR+
Sbjct: 80 CGNIDII-----PGEAPIELPGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRL 127
>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC. This enzyme,
which is found in biotin biosynthetic gene clusters in
proteobacteria, firmicutes, green-sulfur bacteria,
fusobacterium and bacteroides, is believed to carry out
an enzymatic step prior to the formation of pimeloyl-CoA
(although attribution of this annotation is not
traceable). The enzyme appears related to
methyltransferases by homology [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 240
Score = 34.2 bits (79), Expect = 0.12
Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 10/94 (10%)
Query: 358 RSIAHIL--DLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAI 412
R +A L L + A VL+IG G+GYL + P M+ A
Sbjct: 17 REMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKR-FPQAEFIANDISAGMLAQAK 75
Query: 413 ESI-ANISTNHIDLIANETIEIIPHILDLCYLNL 445
+ N+ D E + + DL NL
Sbjct: 76 TKLSENVQFICGDA---EKLPLEDSSFDLIVSNL 106
Score = 29.2 bits (66), Expect = 4.9
Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 17/115 (14%)
Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
+ + A VLD+G G+GY T P + I + ++ + +S+
Sbjct: 29 EKGIFIPASVLDIGCGTGYLTRALLKR-FPQAEFIANDISAGMLAQAKTKLSE------- 80
Query: 188 SGRVRIVEADAREGYLPEAPYDVIYYGGCV------SEVPSRVLNQLKKGGRILA 236
V+ + DA + L ++ +D+I + S+ S + LK GG +LA
Sbjct: 81 --NVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGG-LLA 132
>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain. This domain is
found in ribosomal RNA small subunit methyltransferase C
as well as other methyltransferases .
Length = 170
Score = 32.9 bits (76), Expect = 0.16
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 13/90 (14%)
Query: 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNI--SKG 181
+L L G KVLDLG G G A P +V +++ + R + ++
Sbjct: 24 LSHLPKPL--GGKVLDLGCGYGVLGAALAKR-SPDLEV-------TMVDINARALESARA 73
Query: 182 NKDLLDSGRVRIVEADAREGYLPEAPYDVI 211
N + +D + +D+I
Sbjct: 74 NLAANGLENGEVFWSDLYSA-VEPGKFDLI 102
Score = 32.5 bits (75), Expect = 0.24
Identities = 28/98 (28%), Positives = 37/98 (37%), Gaps = 23/98 (23%)
Query: 368 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDI---AIES---------I 415
+L G KVL++G G G L +A P VT M+DI A+ES +
Sbjct: 26 HLPKPLGGKVLDLGCGYGVLGAALA-KRSPDLEVT----MVDINARALESARANLAANGL 80
Query: 416 ANISTNHIDLIANETIEIIPHILDLCYLN--LHRGAKV 451
N DL + + P DL N H G
Sbjct: 81 ENGEVFWSDLYSA----VEPGKFDLIISNPPFHAGKAT 114
Score = 31.0 bits (71), Expect = 0.88
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 442 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDI---AIESI-ANISTNHI 497
+L G KVL++G G G L +A P VT M+DI A+ES AN++ N +
Sbjct: 26 HLPKPLGGKVLDLGCGYGVLGAALA-KRSPDLEVT----MVDINARALESARANLAANGL 80
Query: 498 DLI 500
+
Sbjct: 81 ENG 83
>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related
methyltransferases [Cell envelope biogenesis, outer
membrane].
Length = 283
Score = 33.4 bits (77), Expect = 0.22
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Query: 353 GPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMD 409
+ + IL+ L L G +L+IG G G LA A G V G+ E +
Sbjct: 54 EEAQRAKLDLILEK--LGLKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEEQLA 109
Query: 410 IAIESIANISTN-HIDLIA 427
A + IA ++++
Sbjct: 110 YAEKRIAARGLEDNVEVRL 128
Score = 33.4 bits (77), Expect = 0.24
Identities = 36/133 (27%), Positives = 47/133 (35%), Gaps = 24/133 (18%)
Query: 116 APNQIADAAENL-KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTG-KVIGVEHIPELIEA 173
Q A L KL L G +LD+G G G ++A G V+GV L E
Sbjct: 54 EEAQRAKLDLILEKLGLKPGMTLLDIGCGWGG-LAIYA--AEEYGVTVVGV----TLSEE 106
Query: 174 SLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVI-------YYGGCVSEVP---SR 223
L K V + D R+ E P+D I + G +
Sbjct: 107 QLAYAEKRIAARGLEDNVEVRLQDYRD---FEEPFDRIVSVGMFEHVG--KENYDDFFKK 161
Query: 224 VLNQLKKGGRILA 236
V LK GGR+L
Sbjct: 162 VYALLKPGGRMLL 174
Score = 32.6 bits (75), Expect = 0.35
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 436 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANI 492
IL+ L L G +L+IG G G LA A G V G+ E + A + IA
Sbjct: 63 LILEK--LGLKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEEQLAYAEKRIAAR 118
Query: 493 STN-HIDLIA 501
++++
Sbjct: 119 GLEDNVEVRL 128
>gnl|CDD|180961 PRK07402, PRK07402, precorrin-6B methylase; Provisional.
Length = 196
Score = 33.0 bits (76), Expect = 0.22
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 139 DLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA 198
D+G+G+G V A ++ P G+VI +E E++ N+ + N D V ++E A
Sbjct: 46 DIGAGTG-TIPVEAGLLCPKGRVIAIERDEEVV-----NLIRRNCDRFGVKNVEVIEGSA 99
Query: 199 REGY--LPEAPYDVIYYGG-CVSEVPSRVLNQLKKGGRILA 236
E L AP V GG + E+ V LK GGR++A
Sbjct: 100 PECLAQLAPAPDRVCIEGGRPIKEILQAVWQYLKPGGRLVA 140
>gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal
structure and biogenesis].
Length = 300
Score = 33.4 bits (77), Expect = 0.23
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 14/93 (15%)
Query: 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA----NISTNHID 424
L G KVL++G G G L L+ P +T ++D+ ++ N++ N ++
Sbjct: 154 LPPDLGGKVLDLGCGYGVLG-LVLAKKSPQAKLT----LVDVNARAVESARKNLAANGVE 208
Query: 425 L---IANETIEIIPHILDLCYLN--LHRGAKVL 452
A+ E + DL N H G V+
Sbjct: 209 NTEVWASNLYEPVEGKFDLIISNPPFHAGKAVV 241
Score = 32.2 bits (74), Expect = 0.51
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA----NISTNHID 498
L G KVL++G G G L L+ P +T ++D+ ++ N++ N ++
Sbjct: 154 LPPDLGGKVLDLGCGYGVLG-LVLAKKSPQAKLT----LVDVNARAVESARKNLAANGVE 208
Score = 29.5 bits (67), Expect = 4.3
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 14/91 (15%)
Query: 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNI--SKG 181
E L L G KVLDLG G G V A P K+ L++ + R + ++
Sbjct: 151 LETLPPDL--GGKVLDLGCGYGVLGLVLAK-KSPQAKL-------TLVDVNARAVESARK 200
Query: 182 NKDLLDSGRVRIVEADAREGYLPEAPYDVIY 212
N + ++ E E +D+I
Sbjct: 201 NLAANGVENTEVWASNLYEP--VEGKFDLII 229
>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function
prediction only].
Length = 248
Score = 32.6 bits (75), Expect = 0.41
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 13/81 (16%)
Query: 136 KVLDLGSGSGYQTCVFAHMV---GPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVR 192
++LDLG+G+G ++ K++GVE E E + RN++ L + R++
Sbjct: 47 RILDLGAGNG----ALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVA--LNPLEE--RIQ 98
Query: 193 IVEADAREGY--LPEAPYDVI 211
++EAD +E L A +D+I
Sbjct: 99 VIEADIKEFLKALVFASFDLI 119
>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation,
ribosomal structure and biogenesis].
Length = 300
Score = 32.7 bits (75), Expect = 0.43
Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 24/139 (17%)
Query: 134 GAKVLDLGSGSGYQTCVF---AHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGR 190
G VLD+G GSG + A +G KV+GV+ P+ +EA+ N +LL +
Sbjct: 163 GKTVLDVGCGSG----ILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGVELLV--Q 215
Query: 191 VRIVEADAREGYLPEAPYDVIY---YGGCVSEVPSRVLNQLKKGGR-ILAPIGPMDD--- 243
+ P+DVI + E+ + LK GGR IL+ I ++D
Sbjct: 216 AKGFLLLEV---PENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGI--LEDQAE 270
Query: 244 --FQKLTQIDRFHDNTLQK 260
+ Q L++
Sbjct: 271 SVAEAYEQAGFEVVEVLER 289
>gnl|CDD|128898 smart00650, rADc, Ribosomal RNA adenine dimethylases.
Length = 169
Score = 31.7 bits (73), Expect = 0.45
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 15/94 (15%)
Query: 118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
++I AA G VL++G G G T ++ +V +E P L LR
Sbjct: 3 DKIVRAANLRP-----GDTVLEIGPGKGALT---EELLERAKRVTAIEIDPRLAPR-LR- 52
Query: 178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVI 211
+ + + ++ DA + LP+ +
Sbjct: 53 -----EKFAAADNLTVIHGDALKFDLPKLQPYKV 81
>gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9
3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol
methylase; Provisional.
Length = 233
Score = 31.7 bits (73), Expect = 0.69
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 13/58 (22%)
Query: 433 IIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA 490
I H L G +VL++G G G L+ MA L VTG+ D + E+I
Sbjct: 40 IREHAGGL------FGKRVLDVGCGGGILSESMARL---GADVTGI----DASEENIE 84
Score = 30.9 bits (71), Expect = 1.4
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Query: 374 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA 416
G +VL++G G G L+ MA L VTG+ D + E+I
Sbjct: 49 GKRVLDVGCGGGILSESMARL---GADVTGI----DASEENIE 84
>gnl|CDD|237858 PRK14904, PRK14904, 16S rRNA methyltransferase B; Provisional.
Length = 445
Score = 32.0 bits (73), Expect = 0.79
Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 107 SLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEH 166
LG V N P Q A L L+ G+ VLDL + G ++ A ++ G++ V
Sbjct: 228 KLGLVSVQN-PTQ---ALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAV-- 281
Query: 167 IPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVI 211
+ L I + L + +E DAR + PE D I
Sbjct: 282 --DRYPQKLEKIRS-HASALGITIIETIEGDARS-FSPEEQPDAI 322
>gnl|CDD|237852 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Provisional.
Length = 258
Score = 31.4 bits (72), Expect = 0.81
Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 22/107 (20%)
Query: 115 NAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEAS 174
++I + AE DG VL++G G G T A KV +E P L E
Sbjct: 16 RVVDRIVEYAE-----DTDGDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEF- 66
Query: 175 LRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVP 221
LR+ +G V I+E DA + LPE + VS +P
Sbjct: 67 LRDDEI------AAGNVEIIEGDALKVDLPE-------FNKVVSNLP 100
Score = 29.1 bits (66), Expect = 4.6
Identities = 22/87 (25%), Positives = 29/87 (33%), Gaps = 21/87 (24%)
Query: 425 LIANETIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDI 484
LI + ++ I Y G VLEIG G G L +A
Sbjct: 12 LIDDRVVDRIVE-----YAEDTDGDPVLEIGPGKGALTDELAKRAKK-----------VY 55
Query: 485 AIE---SIANISTNHIDLIANETIEII 508
AIE +A + N +EII
Sbjct: 56 AIELDPRLAEFLRDDEIAAGN--VEII 80
Score = 28.7 bits (65), Expect = 7.1
Identities = 19/70 (27%), Positives = 23/70 (32%), Gaps = 16/70 (22%)
Query: 368 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE---SIANISTNHID 424
Y G VLEIG G G L +A AIE +A +
Sbjct: 24 YAEDTDGDPVLEIGPGKGALTDELAKRAKK-----------VYAIELDPRLAEFLRDDEI 72
Query: 425 LIANETIEII 434
N +EII
Sbjct: 73 AAGN--VEII 80
>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed.
Length = 250
Score = 31.3 bits (72), Expect = 1.0
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDI---AIE-SIANISTNHIDL 425
+ G VL++G GSG LA + A +G V + DI A+E + N N ++L
Sbjct: 116 LVLPGKTVLDVGCGSGILA-IAAAKLGAK-KVLAV----DIDPQAVEAARENAELNGVEL 169
Score = 31.3 bits (72), Expect = 1.0
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 444 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDI---AIE-SIANISTNHIDL 499
+ G VL++G GSG LA + A +G V + DI A+E + N N ++L
Sbjct: 116 LVLPGKTVLDVGCGSGILA-IAAAKLGAK-KVLAV----DIDPQAVEAARENAELNGVEL 169
>gnl|CDD|233415 TIGR01444, fkbM_fam, methyltransferase, FkbM family. Members of
this family are characterized by two well-conserved
short regions separated by a variable in both sequence
and length. The first of the two regions is found in a
large number of proteins outside this subfamily, a
number of which have been characterized as
methyltransferases. One member of the present family,
FkbM, was shown to be required for a specific
methylation in the biosynthesis of the immunosuppressant
FK506 in Streptomyces strain MA6548.
Length = 144
Score = 30.0 bits (68), Expect = 1.3
Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 10/110 (9%)
Query: 137 VLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD--------- 187
V+D+G+ G + FA G+VI E +P+ E N+ N +
Sbjct: 2 VIDVGANIGDFSLYFARKGAE-GRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR 60
Query: 188 SGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAP 237
G + +D G A EV L+ L + +
Sbjct: 61 DGELEFNVSDLNTGSSSLAADSSADRETESIEVEVVTLDDLVEEFGLDKV 110
>gnl|CDD|129571 TIGR00479, rumA, 23S rRNA (uracil-5-)-methyltransferase RumA. This
protein family was first proposed to be RNA
methyltransferases by homology to the TrmA family. The
member from E. coli has now been shown to act as the 23S
RNA methyltransferase for the conserved U1939. The gene
is now designated rumA and was previously designated
ygcA [Protein synthesis, tRNA and rRNA base
modification].
Length = 431
Score = 30.9 bits (70), Expect = 1.6
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 10/89 (11%)
Query: 96 ANEEPYQDVSASLGYAGVMNAPNQI-ADAAENLKLHLVDGA------KVLDLGSGSGYQT 148
A E P + S L ++ Q+ + E L ++ V+D G G T
Sbjct: 248 AGEGPIYEKSGDLSFSLSARDFFQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFT 307
Query: 149 CVFAHMVGPTGKVIGVEHIPELIEASLRN 177
A V+G+E +PE +E + +N
Sbjct: 308 LPLAKQAK---SVVGIEVVPESVEKAQQN 333
>gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase.
Length = 475
Score = 30.9 bits (70), Expect = 1.8
Identities = 37/122 (30%), Positives = 51/122 (41%), Gaps = 30/122 (24%)
Query: 128 KLHLVDGAKVLDLGSGSG----YQTCVF-AHMVGPTGKVIGVEHIPELIEASLRNISKGN 182
KL L G KVLD+G G G Y F H+VG I+ S+ IS
Sbjct: 261 KLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVG--------------IDLSVNMISFAL 306
Query: 183 KDLLDSGRVRIVE---ADAREGYLPEAPYDVIYYGGCVSEV---PS---RVLNQLKKGGR 233
+ + GR VE AD + P+ +DVIY + + P+ LK GG+
Sbjct: 307 ERAI--GRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGK 364
Query: 234 IL 235
+L
Sbjct: 365 VL 366
>gnl|CDD|133018 cd02537, GT8_Glycogenin, Glycogenin belongs the GT 8 family and
initiates the biosynthesis of glycogen. Glycogenin
initiates the biosynthesis of glycogen by incorporating
glucose residues through a self-glucosylation reaction
at a Tyr residue, and then acts as substrate for chain
elongation by glycogen synthase and branching enzyme. It
contains a conserved DxD motif and an N-terminal
beta-alpha-beta Rossmann-like fold that are common to
the nucleotide-binding domains of most
glycosyltransferases. The DxD motif is essential for
coordination of the catalytic divalent cation, most
commonly Mn2+. Glycogenin can be classified as a
retaining glycosyltransferase, based on the relative
anomeric stereochemistry of the substrate and product in
the reaction catalyzed. It is placed in
glycosyltransferase family 8 which includes
lipopolysaccharide glucose and galactose transferases
and galactinol synthases.
Length = 240
Score = 30.3 bits (69), Expect = 2.1
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 20/93 (21%)
Query: 218 SEVPSRVLNQLKKGGRILAPIGPMD--DFQKLTQIDRFHDNTLQKTDLFE-VAYDAIMRK 274
V L++ G I+ + P+D D L + RF D T K L+ YD K
Sbjct: 38 PGVSEESREALEEVGWIVREVEPIDPPDSANLLKRPRFKD-TYTKLRLWNLTEYD----K 92
Query: 275 ALQMDIHKFQMDPVDENLFTLMDKDSDELFSER 307
+ +D D TL+ ++ DELF
Sbjct: 93 VVFLD--------AD----TLVLRNIDELFDLP 113
>gnl|CDD|223813 COG0742, COG0742, N6-adenine-specific methylase [DNA replication,
recombination, and repair].
Length = 187
Score = 29.9 bits (68), Expect = 2.2
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 29/94 (30%)
Query: 132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPE------LIE--ASLRNISKGNK 183
++GA+VLDL +GSG +G+E + +E I K N
Sbjct: 42 IEGARVLDLFAGSG---------------ALGLEALSRGAARVVFVEKDRKAVKILKENL 86
Query: 184 DLLD-SGRVRIVEADAREGYLPEA----PYDVIY 212
L G R++ DA L + P+D+++
Sbjct: 87 KALGLEGEARVLRNDA-LRALKQLGTREPFDLVF 119
>gnl|CDD|235139 PRK03612, PRK03612, spermidine synthase; Provisional.
Length = 521
Score = 30.6 bits (70), Expect = 2.5
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 11/59 (18%)
Query: 163 GVEHI------PELIE--ASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAP--YDVI 211
VE + P + E + + N LD RV +V DA +L + +DVI
Sbjct: 320 DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAF-NWLRKLAEKFDVI 377
>gnl|CDD|220679 pfam10294, Methyltransf_16, Putative methyltransferase.
Length = 170
Score = 29.6 bits (67), Expect = 2.7
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 373 RGAKVLEIGSGSGYLATLMAHLVGPTG--HVTGLEHMMDIAIESIANISTNHID 424
G VLE+GSG+G L + L+ P +T LE +++ + NI N +
Sbjct: 44 SGLNVLELGSGTG-LVGIAVALLLPGASVTITDLEEAIELMKK---NIELNGLS 93
Score = 29.6 bits (67), Expect = 2.7
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 447 RGAKVLEIGSGSGYLATLMAHLVGPTG--HVTGLEHMMDIAIESIANISTNHID 498
G VLE+GSG+G L + L+ P +T LE +++ + NI N +
Sbjct: 44 SGLNVLELGSGTG-LVGIAVALLLPGASVTITDLEEAIELMKK---NIELNGLS 93
>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA).
This family consists of several Ribosomal protein L11
methyltransferase (EC:2.1.1.-) sequences.
Length = 294
Score = 29.9 bits (68), Expect = 2.7
Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 23/109 (21%)
Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI 193
G VLD+G GSG + A +G KV+GV+ P + A+ N + ++
Sbjct: 161 GETVLDVGCGSGILA-IAALKLGA-KKVVGVDIDPVAVRAAKENAELNGVEA------QL 212
Query: 194 VEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQL--------KKGGRI 234
+ LPE DV+ V+ + + L +L K GG +
Sbjct: 213 EVYLPGD--LPEGKADVV-----VANILADPLIELAPDIYALVKPGGYL 254
Score = 29.1 bits (66), Expect = 5.1
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Query: 374 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDI---AIE-SIANISTNHID 424
G VL++G GSG LA + A +G V G+ DI A+ + N N ++
Sbjct: 161 GETVLDVGCGSGILA-IAALKLGA-KKVVGV----DIDPVAVRAAKENAELNGVE 209
Score = 29.1 bits (66), Expect = 5.1
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Query: 448 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDI---AIE-SIANISTNHID 498
G VL++G GSG LA + A +G V G+ DI A+ + N N ++
Sbjct: 161 GETVLDVGCGSGILA-IAALKLGA-KKVVGV----DIDPVAVRAAKENAELNGVE 209
>gnl|CDD|237898 PRK15068, PRK15068, tRNA mo(5)U34 methyltransferase; Provisional.
Length = 322
Score = 30.2 bits (69), Expect = 2.8
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 6/28 (21%)
Query: 433 IIPHILDLCYLNLHRGAKVLEIGSGSGY 460
++PH+ L G VL++G G+GY
Sbjct: 114 VLPHLSPLK------GRTVLDVGCGNGY 135
>gnl|CDD|201880 pfam01596, Methyltransf_3, O-methyltransferase. Members of this
family are O-methyltransferases. The family includes
catechol o-methyltransferase, caffeoyl-CoA
O-methyltransferase and a family of bacterial
O-methyltransferases that may be involved in antibiotic
production.
Length = 204
Score = 29.6 bits (67), Expect = 3.0
Identities = 30/145 (20%), Positives = 57/145 (39%), Gaps = 20/145 (13%)
Query: 126 NLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDL 185
++ L L+ + L++G +GY A + GK+ + PE E L I K
Sbjct: 37 SMLLKLIGAKRTLEIGVFTGYSLLATALALPEDGKITACDIDPEAYEIGLPFIQKAGVAD 96
Query: 186 LDSGRV----RIVEADAREGYLPEAPYDVIYYGGCVSEVP---SRVLNQLKKG------- 231
S R+ +E ++ L E +D I+ S P R+L +K G
Sbjct: 97 KISFRLGDALPTLEELVKDKPLGE--FDFIFVDADKSNYPNYYERLLELVKVGGLIAIDN 154
Query: 232 ----GRILAPIGPMDDFQKLTQIDR 252
G++ P + ++ ++++
Sbjct: 155 TLWFGKVAEPDDEVPKTVRVRELNK 179
>gnl|CDD|222313 pfam13679, Methyltransf_32, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 143
Score = 28.7 bits (65), Expect = 3.9
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 428 NETIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLV---GPTGHVTGLE 479
E + ++ L+ V++ G+G GYL ++ +L+ V G++
Sbjct: 7 ERLAEFVEPLIK-EVLDKTGCITVVDHGAGKGYLGFILYYLLFKRKYGVRVVGID 60
>gnl|CDD|129413 TIGR00313, cobQ, cobyric acid synthase CobQ. [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 475
Score = 29.8 bits (67), Expect = 4.3
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 21/147 (14%)
Query: 59 KNEGTCQTDLVNHLRDIGKIRTERVAQAFY--KVDRGNFANEEPYQDVSASLGY-----A 111
K +G + ++ H R +G + Q +Y KVD A +E + ++ Y A
Sbjct: 76 KPKGNFTSQVIVHGRAVGDMN----YQEYYKNKVDFFLKAIKESLEILAREYDYVVIEGA 131
Query: 112 GVMNAPNQIADAAENLKL-HLVDGAKVL--DLGSGSGYQTCVFAHMVGPTGKVIGVEHIP 168
G N + N+++ L + +L D+ G VFA + G T K++ E+
Sbjct: 132 GSPAEINLLKRDLANMRIAELANADAILVADIDRGG-----VFASIYG-TLKLLP-ENWR 184
Query: 169 ELIEASLRNISKGNKDLLDSGRVRIVE 195
+LI+ + N +GN D+L SG ++ E
Sbjct: 185 KLIKGIVINKFRGNVDVLKSGIEKLEE 211
>gnl|CDD|237857 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional.
Length = 444
Score = 29.4 bits (67), Expect = 5.7
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 26/95 (27%)
Query: 88 YKVDRGNFANEEPY-------QDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDL 140
+++GN A + + QD S+ L +A A L G VLD
Sbjct: 214 LVIEKGNIAGTDLFKDGLITIQDESSML-----------VAPA-----LDPKGGDTVLDA 257
Query: 141 GSGSGYQTCVFAHMVGPTGKVIGV---EHIPELIE 172
+ G +T A ++ TGKV+ + EH +LIE
Sbjct: 258 CAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIE 292
>gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional.
Length = 223
Score = 28.9 bits (65), Expect = 6.0
Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 11/92 (11%)
Query: 120 IADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNIS 179
+ADA L G +VLDL +GSG A G V V+ + ++ N
Sbjct: 25 LADALA--AEGLGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNA- 79
Query: 180 KGNKDLLDSGRVRIVEADAREGYLPEAPYDVI 211
LL V + D + P+DV+
Sbjct: 80 -----LLAGVDVDVRRGDWARA-VEFRPFDVV 105
>gnl|CDD|235267 PRK04266, PRK04266, fibrillarin; Provisional.
Length = 226
Score = 28.7 bits (65), Expect = 6.5
Identities = 41/132 (31%), Positives = 53/132 (40%), Gaps = 43/132 (32%)
Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHM--VGPTGKVIGVEHIPELIEASLRNISKGNKDL 185
+ G+KVL LG+ SG T V +H+ + G V VE P +R +L
Sbjct: 67 NFPIKKGSKVLYLGAASG--TTV-SHVSDIVEEGVVYAVEFAPR----PMR-------EL 112
Query: 186 LDSGRVR--IVE--ADAR--EGYLP--EAPYDVIYYGGCVSEVPSRVLNQ---------- 227
L+ R I+ ADAR E Y E DVIY +V NQ
Sbjct: 113 LEVAEERKNIIPILADARKPERYAHVVE-KVDVIY-----QDVAQP--NQAEIAIDNAEF 164
Query: 228 -LKKGGRILAPI 238
LK GG +L I
Sbjct: 165 FLKDGGYLLLAI 176
>gnl|CDD|218885 pfam06080, DUF938, Protein of unknown function (DUF938). This
family consists of several hypothetical proteins from
both prokaryotes and eukaryotes. The function of this
family is unknown.
Length = 201
Score = 28.2 bits (63), Expect = 7.7
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 354 PSSERSIAHILD--LCYLNLHRGAKVLEIGSGSG----YLATLM 391
P++ER+ IL Y +VLEI SG+G + A L+
Sbjct: 5 PAAERNREPILSVLQSYFA-KTTERVLEIASGTGQHAVFFAPLL 47
>gnl|CDD|234958 PRK01544, PRK01544, bifunctional N5-glutamine
S-adenosyl-L-methionine-dependent methyltransferase/tRNA
(m7G46) methyltransferase; Reviewed.
Length = 506
Score = 28.7 bits (64), Expect = 7.8
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 373 RGAKVLEIGSGSGYLA-TLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETI 431
+ +LE+G+GSG +A +L+ L P +V DI++++I +N I + I
Sbjct: 138 KFLNILELGTGSGCIAISLLCEL--PNANVIA----TDISLDAIEVAKSNAIKYEVTDRI 191
Query: 432 EII 434
+II
Sbjct: 192 QII 194
Score = 28.7 bits (64), Expect = 7.8
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 447 RGAKVLEIGSGSGYLA-TLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETI 505
+ +LE+G+GSG +A +L+ L P +V DI++++I +N I + I
Sbjct: 138 KFLNILELGTGSGCIAISLLCEL--PNANVIA----TDISLDAIEVAKSNAIKYEVTDRI 191
Query: 506 EII 508
+II
Sbjct: 192 QII 194
>gnl|CDD|226623 COG4139, BtuC, ABC-type cobalamin transport system, permease
component [Coenzyme metabolism].
Length = 326
Score = 28.6 bits (64), Expect = 8.1
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 11/53 (20%)
Query: 433 IIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVG---------PTGHVT 476
+IPHIL LC L HR +L + +G A L+A +V P G VT
Sbjct: 259 VIPHILRLCGLTDHR--LLLPGCALAGASALLLADIVARLALASAELPIGVVT 309
>gnl|CDD|224017 COG1092, COG1092, Predicted SAM-dependent methyltransferases
[General function prediction only].
Length = 393
Score = 28.8 bits (65), Expect = 8.1
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
Query: 131 LVDGAKVLDLGSGSGYQTCVFA-HM-VGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
L G +VL+L S Y T F+ H +G +V V+ +E + N + N LD
Sbjct: 215 LAAGKRVLNLFS---Y-TGGFSVHAALGGASEVTSVDLSKRALEWARENA-ELNG--LDG 267
Query: 189 GRVRIVEADAREGYLPEA-----PYDVI 211
R R + D + +L +A +D+I
Sbjct: 268 DRHRFIVGDVFK-WLRKAERRGEKFDLI 294
>gnl|CDD|180749 PRK06920, dnaE, DNA polymerase III DnaE; Reviewed.
Length = 1107
Score = 28.6 bits (64), Expect = 9.8
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 170 LIEASL--RNISKGNKDLLDSGRVRIVEADAREGY---LPEAPYDVI 211
L EA L R +SK N+D+LD R V+ + GY E YD+I
Sbjct: 672 LGEADLLRRAVSKKNRDILDQERKHFVQGCLQNGYDETSAEKIYDLI 718
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.137 0.407
Gapped
Lambda K H
0.267 0.0829 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,534,297
Number of extensions: 2659739
Number of successful extensions: 2741
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2699
Number of HSP's successfully gapped: 194
Length of query: 511
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 410
Effective length of database: 6,457,848
Effective search space: 2647717680
Effective search space used: 2647717680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.1 bits)