RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7829
(511 letters)
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl
homocysteine, protein repair; HET: SAH; 1.50A {Homo
sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Length = 226
Score = 220 bits (563), Expect = 3e-69
Identities = 88/202 (43%), Positives = 125/202 (61%)
Query: 67 DLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAEN 126
+L+++LR G I+T++V + DR ++A PY D S+G+ ++AP+ A A E
Sbjct: 11 ELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAPHMHAYALEL 70
Query: 127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLL 186
L L +GAK LD+GSGSG T FA MVG TGKVIG++HI EL++ S+ N+ K + LL
Sbjct: 71 LFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLL 130
Query: 187 DSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDDFQK 246
SGRV++V D R GY EAPYD I+ G VP +++QLK GGR++ P+GP Q
Sbjct: 131 SSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQM 190
Query: 247 LTQIDRFHDNTLQKTDLFEVAY 268
L Q D+ D +++ L V Y
Sbjct: 191 LEQYDKLQDGSIKMKPLMGVIY 212
Score = 75.7 bits (187), Expect = 7e-16
Identities = 26/74 (35%), Positives = 48/74 (64%)
Query: 361 AHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST 420
A+ L+L + LH GAK L++GSGSG L A +VG TG V G++H+ ++ +S+ N+
Sbjct: 65 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRK 124
Query: 421 NHIDLIANETIEII 434
+ L+++ ++++
Sbjct: 125 DDPTLLSSGRVQLV 138
Score = 74.9 bits (185), Expect = 1e-15
Identities = 27/78 (34%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
Query: 435 PHI----LDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA 490
PH+ L+L + LH GAK L++GSGSG L A +VG TG V G++H+ ++ +S+
Sbjct: 61 PHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVN 120
Query: 491 NISTNHIDLIANETIEII 508
N+ + L+++ ++++
Sbjct: 121 NVRKDDPTLLSSGRVQLV 138
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
methyltransferase, isomerization, protein repair,
S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
melanogaster} SCOP: c.66.1.7
Length = 227
Score = 216 bits (552), Expect = 1e-67
Identities = 78/207 (37%), Positives = 122/207 (58%), Gaps = 5/207 (2%)
Query: 67 DLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAEN 126
DL+ L+D G I ++ VAQA + DR +++ PY D +G ++AP+ A A E
Sbjct: 18 DLIRQLKDHGVIASDAVAQAMKETDRKHYSPRNPYMDAPQPIGGGVTISAPHMHAFALEY 77
Query: 127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTG-----KVIGVEHIPELIEASLRNISKG 181
L+ HL GA++LD+GSGSGY T F + G +++G+EH EL+ S N++
Sbjct: 78 LRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTD 137
Query: 182 NKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPM 241
++ +LDSG++ IVE D R+GY P APY+ I+ G + P+ ++NQL GGR++ P+GP
Sbjct: 138 DRSMLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVGPD 197
Query: 242 DDFQKLTQIDRFHDNTLQKTDLFEVAY 268
Q + Q D+ + ++ T L V Y
Sbjct: 198 GGSQYMQQYDKDANGKVEMTRLMGVMY 224
Score = 68.0 bits (167), Expect = 3e-13
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 361 AHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTG-----HVTGLEHMMDIAIESI 415
A L+ +L GA++L++GSGSGYL + G + G+EH ++ S
Sbjct: 72 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSK 131
Query: 416 ANISTNHIDLIANETIEII 434
AN++T+ ++ + + I+
Sbjct: 132 ANLNTDDRSMLDSGQLLIV 150
Score = 67.7 bits (166), Expect = 5e-13
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 435 PHI----LDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTG-----HVTGLEHMMDIA 485
PH+ L+ +L GA++L++GSGSGYL + G + G+EH ++
Sbjct: 68 PHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELV 127
Query: 486 IESIANISTNHIDLIANETIEII 508
S AN++T+ ++ + + I+
Sbjct: 128 RRSKANLNTDDRSMLDSGQLLIV 150
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A
methyltransferase; protein repair, isoaspartyl
formation, P. falciparum; HET: SAH; 2.00A {Plasmodium
falciparum}
Length = 227
Score = 199 bits (508), Expect = 3e-61
Identities = 59/210 (28%), Positives = 102/210 (48%), Gaps = 10/210 (4%)
Query: 67 DLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAEN 126
L+ +L+ G I + V +VDRG + E PY D + + ++AP+ A + +
Sbjct: 14 SLLENLKRRGIIDDDDVYNTMLQVDRGKYIKEIPYIDTPVYISHGVTISAPHMHALSLKR 73
Query: 127 LKLHLVDGAKVLDLGSGSGYQTCVFAH----MVGPTGKVIGVEHIPELIEASLRNISKGN 182
L L G++ +D+GSGSGY T A + VIG+E + +L+ SL NI +
Sbjct: 74 LINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDK 133
Query: 183 KDLLDSGRVRIVEADA----REGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPI 238
+LL +I+ + E +D I+ G SE+P +++ L + G+++ PI
Sbjct: 134 PELLKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASELPEILVDLLAENGKLIIPI 193
Query: 239 GPMDDFQKLTQIDRFHDNTLQKTDLFEVAY 268
D Q L +I + + + K LF+V +
Sbjct: 194 EE-DYTQVLYEITK-KNGKIIKDRLFDVCF 221
Score = 66.5 bits (163), Expect = 1e-12
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 361 AHILDLCYLNLHRGAKVLEIGSGSGYLATLMAH----LVGPTGHVTGLEHMMDIAIESIA 416
A L L G++ +++GSGSGYL MA L +V GLE + D+ S+
Sbjct: 68 ALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLE 127
Query: 417 NISTNHIDLIANETIEII 434
NI + +L+ + +II
Sbjct: 128 NIKRDKPELLKIDNFKII 145
Score = 65.3 bits (160), Expect = 3e-12
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 435 PHI----LDLCYLNLHRGAKVLEIGSGSGYLATLMAH----LVGPTGHVTGLEHMMDIAI 486
PH+ L L G++ +++GSGSGYL MA L +V GLE + D+
Sbjct: 64 PHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVN 123
Query: 487 ESIANISTNHIDLIANETIEII 508
S+ NI + +L+ + +II
Sbjct: 124 FSLENIKRDKPELLKIDNFKII 145
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann
methyltransferase, protein repair isomerization; HET:
SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB:
1jg2_A* 1jg3_A* 1jg4_A*
Length = 235
Score = 184 bits (470), Expect = 2e-55
Identities = 54/205 (26%), Positives = 103/205 (50%), Gaps = 14/205 (6%)
Query: 68 LVNHLRDIGKIRTERVAQAFYKVDRGNFANEE----PYQDVSASLGYAGVMNAPNQIADA 123
V L+ G IR++ V +AF K R ++ + D + ++AP+ +A
Sbjct: 24 TVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIM 83
Query: 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK 183
E +L G +L++G+GSG+ + + +V V +E IPEL+E + RN+ +
Sbjct: 84 LE--IANLKPGMNILEVGTGSGWNAALISEIVKT--DVYTIERIPELVEFAKRNLER--- 136
Query: 184 DLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDD 243
V ++ D +G+ P+APYDVI ++P ++ QLK GG+++ P+G
Sbjct: 137 --AGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYHL 194
Query: 244 FQKLTQIDRFHDNTLQKTDLFEVAY 268
+Q+L ++ + + ++ + VA+
Sbjct: 195 WQELLEVRK-TKDGIKIKNHGGVAF 218
Score = 62.3 bits (152), Expect = 3e-11
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 361 AHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI 418
A +L++ NL G +LE+G+GSG+ A L++ +V V +E + ++ + N+
Sbjct: 81 AIMLEI--ANLKPGMNILEVGTGSGWNAALISEIVKT--DVYTIERIPELVEFAKRNL 134
Score = 61.1 bits (149), Expect = 8e-11
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 435 PHI----LDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA 490
PH+ L++ NL G +LE+G+GSG+ A L++ +V V +E + ++ +
Sbjct: 77 PHMVAIMLEI--ANLKPGMNILEVGTGSGWNAALISEIVKT--DVYTIERIPELVEFAKR 132
Query: 491 NI 492
N+
Sbjct: 133 NL 134
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 184 bits (469), Expect = 2e-55
Identities = 67/206 (32%), Positives = 100/206 (48%), Gaps = 14/206 (6%)
Query: 67 DLVNHLRDIGKIRTERVAQAFYKVDRGNFANEE----PYQDVSASLGYAGVMNAPNQIAD 122
++ L G I+++RV A KV R F E Y D +GY ++A + +
Sbjct: 9 AVIEKLIREGYIKSKRVIDALLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIHMVGM 68
Query: 123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGN 182
E L L G KVL++G+G GY V A +VG G V+ +E IPEL E + R + K
Sbjct: 69 MCELLDLK--PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRK-- 124
Query: 183 KDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMD 242
L V ++ D GY P APYD IY ++P ++ QLK GG++L P+G
Sbjct: 125 ---LGYDNVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVG--R 179
Query: 243 DFQKLTQIDRFHDNTLQKTDLFEVAY 268
Q+L ++ + + D VA+
Sbjct: 180 YLQRLVLAEK-RGDEIIIKDCGPVAF 204
Score = 69.5 bits (171), Expect = 1e-13
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 361 AHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST 420
+ +L L+L G KVLEIG+G GY A + A +VG G V +E + ++A ++ +
Sbjct: 67 GMMCEL--LDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRK 124
Query: 421 NHID 424
D
Sbjct: 125 LGYD 128
Score = 68.3 bits (168), Expect = 2e-13
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 435 PHI----LDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA 490
H+ +L L+L G KVLEIG+G GY A + A +VG G V +E + ++A ++
Sbjct: 63 IHMVGMMCEL--LDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAER 120
Query: 491 NISTNHID 498
+ D
Sbjct: 121 TLRKLGYD 128
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 165 bits (420), Expect = 3e-48
Identities = 56/197 (28%), Positives = 88/197 (44%), Gaps = 20/197 (10%)
Query: 78 IRTERVAQAFYKVDRGNFANEE----PYQDVSASL--GYAGVMNAPNQIADAAENLKLHL 131
I+T+ +A+AF KVDR F E Y +L A N + L LH
Sbjct: 11 IKTQELAEAFNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNLGIFMLDELDLH- 69
Query: 132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRV 191
G KVL++G+G GY T + A +V KV+ VE ++ + + L +
Sbjct: 70 -KGQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKL-------LSYYNNI 118
Query: 192 RIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQID 251
+++ D GY E PYD + + + QLK+GG ++ PIG QKL ++
Sbjct: 119 KLILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIGV-GRVQKLYKVI 177
Query: 252 RFHDNTLQKTDLFEVAY 268
+ N+ +L EV +
Sbjct: 178 K-KGNSPSLENLGEVMF 193
Score = 59.6 bits (145), Expect = 2e-10
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 361 AHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS 419
+LD L+LH+G KVLEIG+G GY L+A +V V +E + + +S
Sbjct: 60 IFMLDE--LDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLS 113
Score = 58.4 bits (142), Expect = 6e-10
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS 493
L+LH+G KVLEIG+G GY L+A +V V +E + + +S
Sbjct: 66 LDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLS 113
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type
fold, S-adenosyl-L- methionine; HET: SAH; 1.80A
{Escherichia coli}
Length = 210
Score = 162 bits (412), Expect = 2e-47
Identities = 57/205 (27%), Positives = 97/205 (47%), Gaps = 18/205 (8%)
Query: 68 LVNHLRDIGKIRTERVAQAFYKVDRGNFANEE----PYQDVSASLGYAGVMNAPNQIADA 123
L++ LR G I+ E+V A V R F +E + +++ +G ++ P +A
Sbjct: 11 LLDQLRAQG-IQDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARM 69
Query: 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK 183
E L+L ++VL++G+GSGYQT + AH+V V VE I L + R +
Sbjct: 70 TELLELT--PQSRVLEIGTGSGYQTAILAHLVQ---HVCSVERIKGLQWQARRRLKN--- 121
Query: 184 DLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDD 243
LD V D +G+ AP+D I E+P+ ++ QL +GG ++ P+G ++
Sbjct: 122 --LDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVG--EE 177
Query: 244 FQKLTQIDRFHDNTLQKTDLFEVAY 268
Q L ++ R + V +
Sbjct: 178 HQYLKRVRR-RGGEFIIDTVEAVRF 201
Score = 55.3 bits (134), Expect = 6e-09
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 361 AHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST 420
A + +L L L ++VLEIG+GSGY ++AHLV HV +E + + ++ +
Sbjct: 67 ARMTEL--LELTPQSRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKN 121
Query: 421 NHID 424
+
Sbjct: 122 LDLH 125
Score = 54.5 bits (132), Expect = 1e-08
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHID 498
L L ++VLEIG+GSGY ++AHLV HV +E + + ++ + +
Sbjct: 73 LELTPQSRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKNLDLH 125
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 162 bits (413), Expect = 3e-46
Identities = 57/210 (27%), Positives = 92/210 (43%), Gaps = 18/210 (8%)
Query: 68 LVNHLRDIGKIRTERVAQAFYKVDRGNF-----ANEEPYQDVSASLGYAGVMN----APN 118
L L+ G ++ +A+AF ++ R F Y+D+ G P+
Sbjct: 5 LFWILKKYG--VSDHIAKAFLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPS 62
Query: 119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNI 178
+A E + L G +VL++G G+GY V + +VG G V+ VE+ ++ E + RN+
Sbjct: 63 LMALFMEWVGLD--KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNV 120
Query: 179 SKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPI 238
+ L V V D G +PYDVI+ V EVP QLK+GGR++ PI
Sbjct: 121 ER-----LGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPI 175
Query: 239 GPMDDFQKLTQIDRFHDNTLQKTDLFEVAY 268
++ + + D L E +
Sbjct: 176 NLKLSRRQPAFLFKKKDPYLVGNYKLETRF 205
Score = 67.5 bits (165), Expect = 1e-12
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 361 AHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS 419
A ++ + L +G +VLEIG G+GY A +M+ +VG G V +E+ I + N+
Sbjct: 65 ALFMEW--VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVE 121
Score = 67.5 bits (165), Expect = 2e-12
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 435 PHI----LDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA 490
P + ++ + L +G +VLEIG G+GY A +M+ +VG G V +E+ I +
Sbjct: 61 PSLMALFMEW--VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR 118
Query: 491 NIS 493
N+
Sbjct: 119 NVE 121
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 70.9 bits (174), Expect = 3e-14
Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 11/114 (9%)
Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
+ L +G VLD+G+G+G+ + MVG GKV ++ E++ + ++K
Sbjct: 32 EFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK--- 88
Query: 188 SGRVRIVEADAREGYLPEAPYDVIYYGGCVSEV--PSRVLNQ----LKKGGRIL 235
V +++++ + LP+ D I+ E+ P + L + K +
Sbjct: 89 --NVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLA 140
Score = 54.7 bits (132), Expect = 8e-09
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDL 425
L G VL++G+G+G+ ++ +VG G V + E M++ A E + + ++++
Sbjct: 33 FGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEV 92
Query: 426 I 426
+
Sbjct: 93 L 93
Score = 54.7 bits (132), Expect = 8e-09
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDL 499
L G VL++G+G+G+ ++ +VG G V + E M++ A E + + ++++
Sbjct: 33 FGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEV 92
Query: 500 I 500
+
Sbjct: 93 L 93
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 71.6 bits (175), Expect = 4e-14
Identities = 50/231 (21%), Positives = 74/231 (32%), Gaps = 16/231 (6%)
Query: 42 FPEGHWVI--PPPDNLNHFK-NEGTCQTDL--VNHLRDIGKIRTERVAQAFYKVDRGNFA 96
EG V+ P ++ TDL + IG+ +A F
Sbjct: 2 IREGDKVVLVDPRGKRYLITVSKRDFHTDLGILKLEEIIGR----NFGEAIKSHKGHEFK 57
Query: 97 NEEP-YQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMV 155
P D + + P A + G +++ G GSG T A++V
Sbjct: 58 ILRPRIVDYLDKMKRGPQIVHPKDAALIVAYAGIS--PGDFIVEAGVGSGALTLFLANIV 115
Query: 156 GPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGG 215
GP G+V+ E + + + NI D RV I D EG E VI
Sbjct: 116 GPEGRVVSYEIREDFAKLAWENIKWAGFD----DRVTIKLKDIYEGIEEENVDHVILDLP 171
Query: 216 CVSEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEV 266
V LK GG +A + +L + R + K V
Sbjct: 172 QPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTINV 222
Score = 50.4 bits (120), Expect = 4e-07
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 366 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIAN 417
+ Y + G ++E G GSG L +A++VGP G V E +A E+I
Sbjct: 86 VAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKW 140
Score = 50.4 bits (120), Expect = 4e-07
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIAN 491
+ Y + G ++E G GSG L +A++VGP G V E +A E+I
Sbjct: 86 VAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKW 140
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 70.9 bits (173), Expect = 2e-13
Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 15/122 (12%)
Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
++GA VLDLG G+G + + +VG GKVIGV+ + +E + + + + S
Sbjct: 79 DGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGS 138
Query: 189 GRVRIVE---------ADAREGYLPEAPYDVIYYGGCVSEVP--SRVLNQ----LKKGGR 233
V A A +P++ D++ + + + L+ GG
Sbjct: 139 PSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGE 198
Query: 234 IL 235
+
Sbjct: 199 LY 200
Score = 50.9 bits (121), Expect = 5e-07
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDL 499
GA VL++G G+G L + LVG G V G+ ++ +++A + + +
Sbjct: 79 DGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGS 138
Query: 500 IANETIEIIREF 511
+ + ++ F
Sbjct: 139 PSRSNVRFLKGF 150
Score = 50.5 bits (120), Expect = 7e-07
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIA 411
GA VL++G G+G L + LVG G V G+ ++ +++A
Sbjct: 79 DGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVA 124
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 65.9 bits (161), Expect = 7e-13
Identities = 27/114 (23%), Positives = 40/114 (35%), Gaps = 11/114 (9%)
Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
L + D+G GSG + P + E E E L N L
Sbjct: 20 ALAPKPHETLWDIGGGSGSIAIEWLRS-TPQTTAVCFEISEERRERILSNAIN-----LG 73
Query: 188 SGRVRIVEADAREGY--LPEAPYDVIY--YGGCVSEVPSRVLNQLKKGGRILAP 237
V+ A + +P+ P DVI+ G V + +L GGR++A
Sbjct: 74 VSDRIAVQQGAPRAFDDVPDNP-DVIFIGGGLTAPGVFAAAWKRLPVGGRLVAN 126
Score = 42.8 bits (101), Expect = 5e-05
Identities = 12/80 (15%), Positives = 21/80 (26%), Gaps = 4/80 (5%)
Query: 363 ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH 422
L + L + +IG GSG +A P E + ++N
Sbjct: 15 ALAISALAPKPHETLWDIGGGSGSIAIEWLRS-TPQTTAVCFEISEERRERILSNAINLG 73
Query: 423 ---IDLIANETIEIIPHILD 439
+ + D
Sbjct: 74 VSDRIAVQQGAPRAFDDVPD 93
Score = 42.1 bits (99), Expect = 1e-04
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Query: 437 ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH 496
L + L + +IG GSG +A P E + ++N
Sbjct: 15 ALAISALAPKPHETLWDIGGGSGSIAIEWLRS-TPQTTAVCFEISEERRERILSNAINLG 73
Query: 497 ID 498
+
Sbjct: 74 VS 75
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 68.1 bits (166), Expect = 7e-13
Identities = 41/232 (17%), Positives = 77/232 (33%), Gaps = 17/232 (7%)
Query: 28 IQNEDDFCRKDMDEFPEGHWVIPPPDNLNHF----KNEGTCQTDL--VNHLRDIGKIRTE 81
I + K D G V+ ++ + F + + T L ++ K E
Sbjct: 6 IHHHHHHVGKVADTLKPGDRVLLSFEDESEFLVDLEKDKKLHTHLGIIDLNEVFEKGPGE 65
Query: 82 RVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLG 141
+ + + D ++ + P + A L + +G +++D G
Sbjct: 66 IIRT---SAGKKGYILIPSLIDEIMNMKRRTQIVYPKDSSFIAMMLDVK--EGDRIIDTG 120
Query: 142 SGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG 201
GSG V A VG +GKV E E + + N++K + +VR +
Sbjct: 121 VGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG---- 176
Query: 202 YLPEAPYDVIYYG-GCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDR 252
E D ++ + LK GGR + Q+ + +
Sbjct: 177 -FDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQ 227
Score = 50.0 bits (119), Expect = 7e-07
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 366 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIAN 417
L++ G ++++ G GSG + ++A VG +G V E +A ++
Sbjct: 105 AMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTK 159
Score = 50.0 bits (119), Expect = 7e-07
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIAN 491
L++ G ++++ G GSG + ++A VG +G V E +A ++
Sbjct: 105 AMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTK 159
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 67.9 bits (165), Expect = 2e-12
Identities = 29/175 (16%), Positives = 55/175 (31%), Gaps = 11/175 (6%)
Query: 101 YQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGK 160
+D + + P I + ++ G VL+ GSGSG + + VG G+
Sbjct: 75 LEDYVVLMKRGTAITFPKDINMILSMMDIN--PGDTVLEAGSGSGGMSLFLSKAVGSQGR 132
Query: 161 VIGVEHIPELIEASLRNISK--------GNKDLLDSGRVRIVEADAREGYLPEAPYDVIY 212
VI E + + + +N ++ D+ + + +D +
Sbjct: 133 VISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVA 192
Query: 213 YG-GCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEV 266
LK GG + + +L R + L + EV
Sbjct: 193 LDMLNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCEKISEV 247
Score = 48.6 bits (115), Expect = 2e-06
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 366 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS 419
L ++++ G VLE GSGSG ++ ++ VG G V E D + N
Sbjct: 98 LSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYK 151
Score = 48.6 bits (115), Expect = 2e-06
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS 493
L ++++ G VLE GSGSG ++ ++ VG G V E D + N
Sbjct: 98 LSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYK 151
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 65.3 bits (159), Expect = 2e-12
Identities = 24/138 (17%), Positives = 51/138 (36%), Gaps = 20/138 (14%)
Query: 114 MNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEA 173
+ N + + + +K+ + +G V+D G+G T A +VG G+V G + + I
Sbjct: 3 LTIKNSLGQSHDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIAN 62
Query: 174 SLRNISKGNKDLLDSGRVRIVEADAREG-YLPEAPYDVIYYGGCVSEVP----------- 221
+ + ++ N RV +++ + + P + +
Sbjct: 63 TTKKLTDLN----LIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETT 118
Query: 222 ----SRVLNQLKKGGRIL 235
S+ + L GG I
Sbjct: 119 IQALSKAMELLVTGGIIT 136
Score = 49.9 bits (119), Expect = 3e-07
Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 9/95 (9%)
Query: 359 SIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESI 415
+H D + + G V++ G+G +A LVG G V G + + + +
Sbjct: 10 GQSH--DYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKL 67
Query: 416 ANI-STNHIDLI---ANETIEIIPHILDLCYLNLH 446
++ + + LI + I + NL
Sbjct: 68 TDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLG 102
Score = 49.5 bits (118), Expect = 5e-07
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 434 IPHILDLCY----LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESI 489
I + L + + + G V++ G+G +A LVG G V G DI ++I
Sbjct: 5 IKNSLGQSHDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGF----DIQDKAI 60
Query: 490 ANISTNHIDLIANETIEIIR 509
AN + DL + + +I+
Sbjct: 61 ANTTKKLTDLNLIDRVTLIK 80
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 63.9 bits (156), Expect = 5e-12
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 10/113 (8%)
Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
+D+G G+G T A +V ++ PE I + N+ +
Sbjct: 28 LAEPGKNDVAVDVGCGTGGVTLELAG---RVRRVYAIDRNPEAISTTEMNLQR----HGL 80
Query: 188 SGRVRIVEADAREGYLPEAPYDVIYYGGC---VSEVPSRVLNQLKKGGRILAP 237
V ++E DA E D+ GG + E+ + ++LK GGRI+
Sbjct: 81 GDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVT 133
Score = 38.1 bits (89), Expect = 0.002
Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 363 ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH 422
L +C + +++G G+G + +A V V ++ E+I+ N
Sbjct: 23 CLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAID----RNPEAISTTEMNL 75
Query: 423 IDLIANETIEIIP 435
+ + ++
Sbjct: 76 QRHGLGDNVTLME 88
Score = 38.1 bits (89), Expect = 0.003
Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 437 ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH 496
L +C + +++G G+G + +A V V ++ E+I+ N
Sbjct: 23 CLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAID----RNPEAISTTEMNL 75
Query: 497 IDLIANETIEIIR 509
+ + ++
Sbjct: 76 QRHGLGDNVTLME 88
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 62.7 bits (152), Expect = 3e-11
Identities = 33/220 (15%), Positives = 66/220 (30%), Gaps = 22/220 (10%)
Query: 39 MDEFPEGHWVIPPPDNLNHF---KNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNF 95
M+ F EG +V+ + + ++ + V V F
Sbjct: 1 MNSFKEGEYVLIRFGEKKFLRKLLPKQSLSVKK-------SVLKFDEVIGKPEGVKINGF 53
Query: 96 ANEEP--YQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAH 153
P + + + P A L L+ +VL+ G+GSG V +
Sbjct: 54 EVYRPTLEEIILLGFERKTQIIYPKDSFYIALKLNLN--KEKRVLEFGTGSGALLAVLSE 111
Query: 154 MVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYY 213
+ G VE + + +L+ V+ D ++ +PE + +
Sbjct: 112 VAGEVWTFEAVEEFYKTAQKNLKK-------FNLGKNVKFFNVDFKDAEVPEGIFHAAFV 164
Query: 214 -GGCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDR 252
+V L +G + + + KL +
Sbjct: 165 DVREPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIE 204
Score = 46.5 bits (110), Expect = 6e-06
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 366 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA------NIS 419
LNL++ +VLE G+GSG L +++ + G +E A +++ N+
Sbjct: 84 ALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVK 143
Query: 420 TNHIDLIANETIEIIPH 436
++D E E I H
Sbjct: 144 FFNVDFKDAEVPEGIFH 160
Score = 46.5 bits (110), Expect = 8e-06
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA------NIS 493
LNL++ +VLE G+GSG L +++ + G +E A +++ N+
Sbjct: 84 ALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVK 143
Query: 494 TNHIDL 499
++D
Sbjct: 144 FFNVDF 149
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 63.2 bits (153), Expect = 4e-11
Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 9/118 (7%)
Query: 127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLL 186
L+ HL G V + G + + P +++G+++ PE ++ + R +
Sbjct: 112 LQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALA-- 169
Query: 187 DSGRVRIVEADAREGYLP-EAPYDVIYYGGCVSEVP--SRVLNQLKKGGRILAPIGPM 241
G++ + DA + L YD++ G P +RV ++ + L P G +
Sbjct: 170 --GQITLHRQDAWK--LDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGAL 223
Score = 46.6 bits (110), Expect = 9e-06
Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 3/49 (6%)
Query: 371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIA 416
L G V + G + + P + G+ +D A A
Sbjct: 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAA 164
Score = 46.6 bits (110), Expect = 9e-06
Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 3/49 (6%)
Query: 445 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIA 490
L G V + G + + P + G+ +D A A
Sbjct: 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAA 164
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI,
tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Length = 258
Score = 62.4 bits (151), Expect = 4e-11
Identities = 35/162 (21%), Positives = 58/162 (35%), Gaps = 7/162 (4%)
Query: 101 YQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGK 160
++ + + P + L L G +VL+ G+GSG T A VG G
Sbjct: 66 LEEYLLHMKRSATPTYPKDASAMVTLLDLA--PGMRVLEAGTGSGGLTLFLARAVGEKGL 123
Query: 161 VIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYG-GCVSE 219
V E P + + RN+ + VR E L EA YD + +
Sbjct: 124 VESYEARPHHLAQAERNV----RAFWQVENVRFHLGKLEEAELEEAAYDGVALDLMEPWK 179
Query: 220 VPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKT 261
V + LK ++A + + +L + H L++
Sbjct: 180 VLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFRLERV 221
Score = 43.1 bits (101), Expect = 9e-05
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 366 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHID 424
+ L+L G +VLE G+GSG L +A VG G V E ++ N+
Sbjct: 89 VTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV 147
Score = 43.1 bits (101), Expect = 9e-05
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHID 498
+ L+L G +VLE G+GSG L +A VG G V E ++ N+
Sbjct: 89 VTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV 147
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 61.4 bits (149), Expect = 4e-11
Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 8/110 (7%)
Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
L G + D+G GSG + + G+ I +E + IE +NI
Sbjct: 50 ALAPRRGELLWDIGGGSGSVSVEWCL---AGGRAITIEPRADRIENIQKNIDT----YGL 102
Query: 188 SGRVRIVEADAREGYLPEAPYD-VIYYGGCVSEVPSRVLNQLKKGGRILA 236
S R+R V+ A + V GG + R+ L G RI+A
Sbjct: 103 SPRMRAVQGTAPAALADLPLPEAVFIGGGGSQALYDRLWEWLAPGTRIVA 152
Score = 34.4 bits (79), Expect = 0.049
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 7/72 (9%)
Query: 363 ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH 422
L L L RG + +IG GSG ++ G +E + I NI N
Sbjct: 45 ALTLAALAPRRGELLWDIGGGSGSVSVEWCL---AGGRAITIEPR----ADRIENIQKNI 97
Query: 423 IDLIANETIEII 434
+ + +
Sbjct: 98 DTYGLSPRMRAV 109
Score = 34.4 bits (79), Expect = 0.049
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 7/72 (9%)
Query: 437 ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH 496
L L L RG + +IG GSG ++ G +E + I NI N
Sbjct: 45 ALTLAALAPRRGELLWDIGGGSGSVSVEWCL---AGGRAITIEPR----ADRIENIQKNI 97
Query: 497 IDLIANETIEII 508
+ + +
Sbjct: 98 DTYGLSPRMRAV 109
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 61.1 bits (148), Expect = 6e-11
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
KL L D + D+G+GS + ++++ P G++ +E P+ + N+ K
Sbjct: 35 KLRLQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGFIRDNLKK-----FV 88
Query: 188 SGRVRIVEADAREGYLPEAPYDVIYYGGC---VSEVPSRVLNQLKKGGRILAPI 238
+ V +VEA A EG D ++ GG + E+ V +LK G I+
Sbjct: 89 ARNVTLVEAFAPEGLDDLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNA 142
Score = 35.3 bits (81), Expect = 0.025
Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 7/106 (6%)
Query: 363 ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH 422
+ L L L + +IG+GS ++ ++L+ P G + LE + + I N
Sbjct: 30 AVTLSKLRLQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERN----PQYLGFIRDNL 84
Query: 423 IDLIANETIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHL 468
+A + ++ +L +V IG G L ++ +
Sbjct: 85 KKFVAR-NVTLVEAFAPEGLDDLPDPDRVF-IGGSGGMLEEIIDAV 128
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 62.5 bits (151), Expect = 6e-11
Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 13/117 (11%)
Query: 123 AAENLKLHLVDGAKVLDLGSGSGYQTC-VFAHMVGPTGKVIGVEHIPELIEASLRNISKG 181
E G + + +G G T + +H+ G +V VE P++ E S + I
Sbjct: 112 KNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYG--MRVNVVEIEPDIAELSRKVIEGL 169
Query: 182 NKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSE---VPSRVLNQLKKGGRIL 235
D V ++ D + +DV+ V + + RI+
Sbjct: 170 GVD-----GVNVITGDETV--IDGLEFDVLMVAALAEPKRRVFRNIHRYVDTETRII 219
Score = 40.6 bits (94), Expect = 8e-04
Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 369 LNLHRGAKVLEIGSGSGYLAT-LMAHLVGPTGHVTGLEH---MMDIAIESIANISTNHID 424
RG + + IG G L L++H+ G V +E + +++ + I + + ++
Sbjct: 118 GRFRRGERAVFIGGGPLPLTGILLSHVYG--MRVNVVEIEPDIAELSRKVIEGLGVDGVN 175
Query: 425 LIANETIEIIPHILDLCYLNLHRGAKV 451
+I + I D+ + K
Sbjct: 176 VITGDETVIDGLEFDVLMVAALAEPKR 202
Score = 37.5 bits (86), Expect = 0.008
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 443 LNLHRGAKVLEIGSGSGYLAT-LMAHLVGPTGHVTGLEH 480
RG + + IG G L L++H+ G V +E
Sbjct: 118 GRFRRGERAVFIGGGPLPLTGILLSHVYG--MRVNVVEI 154
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 60.6 bits (147), Expect = 1e-10
Identities = 43/192 (22%), Positives = 74/192 (38%), Gaps = 14/192 (7%)
Query: 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK 183
A + L D AK+ D+G G+G QT A V G++ G++ P+ IE N K N
Sbjct: 37 AVSFINELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANC 94
Query: 184 DLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVP-SRVLNQ----LKKGGRILAPI 238
+ RV+ + D+I+ G + + R +N+ LKKGG I
Sbjct: 95 ----ADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSE 150
Query: 239 GPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQM--DPVDENLFTLM 296
++ +I+ F + + + M +A F + + E+ F
Sbjct: 151 ASWFTSERPAEIEDFWMDAYPEISVIP-TCIDKMERAGYTPTAHFILPENCWTEHYFAPQ 209
Query: 297 DKDSDELFSERV 308
D+ + E
Sbjct: 210 DEVRETFMKEHA 221
Score = 47.5 bits (113), Expect = 3e-06
Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 6/76 (7%)
Query: 345 VHGSAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 404
GP S + + L AK+ +IG G+G +A V G +TG+
Sbjct: 19 YFKLLKRQGPGSPEATRKAVSFI-NELTDDAKIADIGCGTGGQTLFLADYVK--GQITGI 75
Query: 405 ---EHMMDIAIESIAN 417
++I E+
Sbjct: 76 DLFPDFIEIFNENAVK 91
Score = 41.0 bits (96), Expect = 5e-04
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 444 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIAN 491
L AK+ +IG G+G +A V G +TG+ ++I E+
Sbjct: 43 ELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVK 91
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 60.0 bits (145), Expect = 3e-10
Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 12/114 (10%)
Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG---R 190
G K+L++G G G + V A VG +G V G++ I + + + LL R
Sbjct: 44 GEKILEIGCGQGDLSAVLADQVGSSGHVTGID-IASPDYGAPLTLGQAWNHLLAGPLGDR 102
Query: 191 VRIVEADAREGYL---PEAPYDVIYYGGCVSEVPS-----RVLNQLKKGGRILA 236
+ + L + +D + + S + + +
Sbjct: 103 LTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVD 156
Score = 52.0 bits (124), Expect = 1e-07
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIAN 417
+ G K+LEIG G G L+ ++A VG +GHVTG+ DIA
Sbjct: 39 WQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGI----DIASPDYGA 83
Score = 52.0 bits (124), Expect = 1e-07
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIAN 491
+ G K+LEIG G G L+ ++A VG +GHVTG+ DIA
Sbjct: 39 WQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGI----DIASPDYGA 83
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 60.0 bits (145), Expect = 3e-10
Identities = 24/153 (15%), Positives = 51/153 (33%), Gaps = 15/153 (9%)
Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
+ ++D G G GY V ++ K G++ L+ + D
Sbjct: 18 WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYD---- 73
Query: 189 GRVRIVEADAREGYLP-EAPYDVIY--YGGCVSEVPSRVLNQ----LKKGGRILAPIGPM 241
+E DA E + YD+ P +L + +KKGG+I+
Sbjct: 74 --SEFLEGDATE--IELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHW 129
Query: 242 DDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRK 274
+D + + + + +++ ++
Sbjct: 130 ISNMASYLLDGEKQSEFIQLGVLQKLFESDTQR 162
Score = 49.6 bits (118), Expect = 1e-06
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 368 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTN 421
+ + +++ G G GYL ++ L+ TG+ E ++ A E + +
Sbjct: 17 VWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYD 73
Score = 49.6 bits (118), Expect = 1e-06
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 442 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTN 495
+ + +++ G G GYL ++ L+ TG+ E ++ A E + +
Sbjct: 17 VWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYD 73
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 59.9 bits (145), Expect = 4e-10
Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 20/118 (16%)
Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
GAKVL+ G G G QT + A P ++ ++ PE +E + N K
Sbjct: 33 TVYPPGAKVLEAGCGIGAQTVILAKN-NPDAEITSIDISPESLEKARENTEKNGIK---- 87
Query: 189 GRVRIVEADAREGYLPEAPYDVIYYGGCVSEV------PSRVLNQ----LKKGGRILA 236
V+ ++A+ ++ +D I+ V V P L LK GG I
Sbjct: 88 -NVKFLQANIFSLPFEDSSFDHIF----VCFVLEHLQSPEEALKSLKKVLKPGGTITV 140
Score = 49.5 bits (118), Expect = 8e-07
Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 9/95 (9%)
Query: 337 TRDKYGRLVHGSAPDNGPSSERSIAHILDLCY--LNLHRGAKVLEIGSGSGYLATLMAHL 394
+ +Y VHG + + L + GAKVLE G G G ++A
Sbjct: 2 SLTEY---VHGYSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKN 58
Query: 395 VGPTGHVTGL---EHMMDIAIESIANISTNHIDLI 426
P +T + ++ A E+ ++ +
Sbjct: 59 -NPDAEITSIDISPESLEKARENTEKNGIKNVKFL 92
Score = 46.1 bits (109), Expect = 1e-05
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDL 499
GAKVLE G G G ++A P +T + ++ A E+ ++
Sbjct: 33 TVYPPGAKVLEAGCGIGAQTVILAKN-NPDAEITSIDISPESLEKARENTEKNGIKNVKF 91
Query: 500 I 500
+
Sbjct: 92 L 92
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 59.7 bits (144), Expect = 4e-10
Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 4/122 (3%)
Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
+ L G +L++G GSG + + + G + VE + ++ ++ N+ + D
Sbjct: 105 RCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNL----SEFYD 160
Query: 188 SGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKL 247
G VR +D + + VI ++ + +K G + D +K
Sbjct: 161 IGNVRTSRSDIADFISDQMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKT 220
Query: 248 TQ 249
Sbjct: 221 VL 222
Score = 48.9 bits (116), Expect = 1e-06
Identities = 16/99 (16%), Positives = 42/99 (42%), Gaps = 7/99 (7%)
Query: 360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIA 416
++I+ L G +LE+G GSG +++ + + + G +T +E + A+++++
Sbjct: 99 ASYIIM--RCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLS 156
Query: 417 NI--STNHIDLIANETIEIIPHILDLCYLNLHRGAKVLE 453
N ++ I + D ++ ++
Sbjct: 157 EFYDIGNVRTSRSDIADFISDQMYDAVIADIPDPWNHVQ 195
Score = 47.0 bits (111), Expect = 6e-06
Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIA------ 490
+ L G +LE+G GSG +++ + + + G +T +E + A+++++
Sbjct: 103 IMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIG 162
Query: 491 NISTNHIDL 499
N+ T+ D+
Sbjct: 163 NVRTSRSDI 171
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural
genomics, protein structure initiative; HET: SAM; 1.98A
{Mycobacterium tuberculosis} SCOP: c.66.1.13
Length = 280
Score = 59.8 bits (144), Expect = 5e-10
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI 193
GA+VL+ G+GSG T VGP G+VI E + E + RN+S D R+
Sbjct: 100 GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPD--NWRL 157
Query: 194 VEADAREGYLPEAPYDVIYYG-GCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQ 249
V +D + LP+ D EV V L GG ++ + + ++ +
Sbjct: 158 VVSDLADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVE 214
Score = 41.3 bits (96), Expect = 4e-04
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 366 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIA 416
+ ++ GA+VLE G+GSG L + VGP G V E + A +++
Sbjct: 92 VHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVS 145
Score = 41.3 bits (96), Expect = 4e-04
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIA 490
+ ++ GA+VLE G+GSG L + VGP G V E + A +++
Sbjct: 92 VHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVS 145
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 58.7 bits (142), Expect = 7e-10
Identities = 39/190 (20%), Positives = 75/190 (39%), Gaps = 14/190 (7%)
Query: 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK 183
A + +L + + + D+G G+G QT V A V G+V G++ + I+ RN +
Sbjct: 37 ALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGL 94
Query: 184 DLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVP-SRVLNQ----LKKGGRILAPI 238
RV + + D+I+ G + + R LN+ LKKGG +
Sbjct: 95 ----QNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSE 150
Query: 239 GPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQM--DPVDENLFTLM 296
++ +I+ F + + D A + KA + + F + + ++ FT
Sbjct: 151 CSWFTDERPAEINDFWMDAYPEIDTIP-NQVAKIHKAGYLPVATFILPENCWTDHYFTPK 209
Query: 297 DKDSDELFSE 306
++
Sbjct: 210 VAAQKIFLTK 219
Score = 48.7 bits (116), Expect = 2e-06
Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 9/90 (10%)
Query: 334 EITTRDKYGRL---VHGSAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATL 390
T D L + GP S L NL + + +IG G+G +
Sbjct: 5 NKTIHDFELNLICDFFSNMERQGPGSPEVTLKALSFI-DNLTEKSLIADIGCGTGGQTMV 63
Query: 391 MAHLVGPTGHVTGL---EHMMDIAIESIAN 417
+A V G VTGL +DI +
Sbjct: 64 LAGHVT--GQVTGLDFLSGFIDIFNRNARQ 91
Score = 40.6 bits (95), Expect = 6e-04
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 444 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIAN 491
NL + + +IG G+G ++A V G VTGL +DI +
Sbjct: 43 NLTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQ 91
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 57.4 bits (138), Expect = 1e-09
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 24/146 (16%)
Query: 110 YAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPE 169
+A V++ P+ L L +VL+ G G G F + + PE
Sbjct: 25 WARVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQA---ARWAAYDFSPE 81
Query: 170 LIEASLRNISKGNKDLLDSGRVRIVEADAREG--YLPEAPYDVIY----YGGCVSEVPSR 223
L++ + N + + E + + AP+ +I + +P
Sbjct: 82 LLKLARAN----------APHADVYEWNGKGELPAGLGAPFGLIVSRRGPTSVILRLP-E 130
Query: 224 VLNQLKKGGRILAPIGPMDDFQKLTQ 249
+ L GP + ++ +
Sbjct: 131 L---AAPDAHFLYV-GPRLNVPEVPE 152
Score = 40.0 bits (93), Expect = 9e-04
Identities = 16/125 (12%), Positives = 29/125 (23%), Gaps = 19/125 (15%)
Query: 371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDLIA 427
L +VLE G G G A ++ +A + + +
Sbjct: 46 LTPQTRVLEAGCGHGPDAARFGPQA---ARWAAYDFSPELLKLARANAPHADVYEWNGKG 102
Query: 428 NETIE--------IIPHILDLCYLNLHR----GAKVLEIGSGSGYLATLMAHLVGPTGHV 475
+ L L A L +G + + L +
Sbjct: 103 ELPAGLGAPFGLIVSRRGPTSVILRLPELAAPDAHFLYVG-PRLNVPEVPERLAAVGWDI 161
Query: 476 TGLEH 480
+H
Sbjct: 162 VAEDH 166
Score = 40.0 bits (93), Expect = 0.001
Identities = 9/61 (14%), Positives = 16/61 (26%), Gaps = 6/61 (9%)
Query: 445 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDLIA 501
L +VLE G G G A ++ +A + + +
Sbjct: 46 LTPQTRVLEAGCGHGPDAARFGPQA---ARWAAYDFSPELLKLARANAPHADVYEWNGKG 102
Query: 502 N 502
Sbjct: 103 E 103
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 56.7 bits (137), Expect = 4e-09
Identities = 33/141 (23%), Positives = 54/141 (38%), Gaps = 20/141 (14%)
Query: 108 LGYAGVMNAPNQIADAAENL------KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKV 161
GY A + DA + L L + G +VLD+G G G A +V
Sbjct: 30 FGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARD--VRV 87
Query: 162 IGVEHIPELIE-ASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEV 220
G+ + A+ R + G + RV ADA + +A +D ++ + +
Sbjct: 88 TGISISRPQVNQANARATAAGLAN-----RVTFSYADAMDLPFEDASFDAVWALESLHHM 142
Query: 221 PSR--VLNQ----LKKGGRIL 235
P R L + L+ GG +
Sbjct: 143 PDRGRALREMARVLRPGGTVA 163
Score = 40.1 bits (94), Expect = 8e-04
Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 18/93 (19%)
Query: 341 YGRLVHGSAPDN-GPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTG 399
+G A + +++R ++ L L++ G +VL++G G G A +A
Sbjct: 30 FGYWEDAGADVSVDDATDRLTDEMIAL--LDVRSGDRVLDVGCGIGKPAVRLATARD--V 85
Query: 400 HVTGLEHMMDIAIESIANISTNHIDLIANETIE 432
VTG+ +IS ++ AN
Sbjct: 86 RVTGI------------SISRPQVN-QANARAT 105
Score = 37.5 bits (87), Expect = 0.006
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 15/64 (23%)
Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIAN 502
L++ G +VL++G G G A +A VTG+ +IS ++ AN
Sbjct: 57 LDVRSGDRVLDVGCGIGKPAVRLATARD--VRVTGI------------SISRPQVN-QAN 101
Query: 503 ETIE 506
Sbjct: 102 ARAT 105
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 55.6 bits (134), Expect = 5e-09
Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 12/110 (10%)
Query: 132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRV 191
+ +D+GSG G + A + ++ + E +L+NI+ N + R+
Sbjct: 42 ITAGTCIDIGSGPGALSIALAKQSD--FSIRALDFSKHMNEIALKNIADANL----NDRI 95
Query: 192 RIVEADAREGYLPEAPYDVIYYGGCVSEVP--SRVLNQ----LKKGGRIL 235
+IV+ D + + D+I G V + + LK GG+
Sbjct: 96 QIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTY 145
Score = 43.2 bits (102), Expect = 7e-05
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIAN 417
++IGSG G L+ +A + L +HM +IA+++IA+
Sbjct: 43 TAGTCIDIGSGPGALSIALAKQSD--FSIRALDFSKHMNEIALKNIAD 88
Score = 43.2 bits (102), Expect = 7e-05
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 447 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIAN 491
++IGSG G L+ +A + L +HM +IA+++IA+
Sbjct: 43 TAGTCIDIGSGPGALSIALAKQSD--FSIRALDFSKHMNEIALKNIAD 88
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 55.9 bits (135), Expect = 6e-09
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 13/114 (11%)
Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
L + G ++LDLGSGSG C +A G G++ + R ++L
Sbjct: 31 VLRMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRA----EELGV 84
Query: 188 SGRVRIVEADAREGYLPEAPYDVI------YYGGCVSEVPSRVLNQLKKGGRIL 235
S RV + DA Y+ DV + G + + LK GG +L
Sbjct: 85 SERVHFIHNDAAG-YVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIML 137
Score = 48.6 bits (116), Expect = 1e-06
Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 7/82 (8%)
Query: 338 RDKYGRLVHGSAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGP 397
+ + + P +E A + + L + G ++L++GSGSG + A G
Sbjct: 3 IPRIFTISESEHRIHNPFTEEKYATLGRV--LRMKPGTRILDLGSGSGEMLCTWARDHG- 59
Query: 398 TGHVTGL---EHMMDIAIESIA 416
TG+ A
Sbjct: 60 -ITGTGIDMSSLFTAQAKRRAE 80
Score = 37.5 bits (87), Expect = 0.007
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Query: 436 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIA 490
+ + L + G ++L++GSGSG + A G TG+ A
Sbjct: 27 TLGRV--LRMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAE 80
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 54.1 bits (131), Expect = 8e-09
Identities = 27/137 (19%), Positives = 57/137 (41%), Gaps = 9/137 (6%)
Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
KL+L V+D+G GSG T A V ++++ IE + +N++K +
Sbjct: 30 KLNLNKDDVVVDVGCGSGGMTVEIAKRC---KFVYAIDYLDGAIEVTKQNLAK-----FN 81
Query: 188 SGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKL 247
+I++ A + L + ++ + GG + + KK I+A +++ K+
Sbjct: 82 IKNCQIIKGRAEDV-LDKLEFNKAFIGGTKNIEKIIEILDKKKINHIVANTIVLENAAKI 140
Query: 248 TQIDRFHDNTLQKTDLF 264
+ ++F
Sbjct: 141 INEFESRGYNVDAVNVF 157
Score = 35.7 bits (83), Expect = 0.017
Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 366 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESI-ANISTNHID 424
+ LNL++ V+++G GSG + +A V ++++ AIE N++ +I
Sbjct: 28 IGKLNLNKDDVVVDVGCGSGGMTVEIAKRC---KFVYAIDYLDG-AIEVTKQNLAKFNIK 83
Query: 425 ---LIANETIEIIPHI 437
+I +++ +
Sbjct: 84 NCQIIKGRAEDVLDKL 99
Score = 34.9 bits (81), Expect = 0.026
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESI-ANISTNHID 498
+ LNL++ V+++G GSG + +A V ++++ AIE N++ +I
Sbjct: 28 IGKLNLNKDDVVVDVGCGSGGMTVEIAKRC---KFVYAIDYLDG-AIEVTKQNLAKFNIK 83
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.6 bits (136), Expect = 1e-08
Identities = 72/383 (18%), Positives = 113/383 (29%), Gaps = 118/383 (30%)
Query: 42 FPEG----HWV-----IPPPDNLN---------------HFKNEGTCQTDLVNH--LRDI 75
F +G W+ P D L H+ T + LR
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV--TAKLLGFTPGELRSY 266
Query: 76 GKIRTER-----VAQAFYKVDRGN--FANEEPYQDVSASLGYAGVMNAPNQ------IAD 122
K T A A + D F + V +G PN + D
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGN 182
+ EN G + M+ + + E ++ ++K N
Sbjct: 327 SLEN----------------NEGVPS----PMLS----ISNLTQ--EQVQDY---VNKTN 357
Query: 183 KDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGR-ILAPIG-- 239
L +V I + + V+ G P + L L R AP G
Sbjct: 358 SHLPAGKQVEISLVNGAKNL-------VV--SG-----PPQSLYGLNLTLRKAKAPSGLD 403
Query: 240 ----PMDDFQKLTQIDRF-------HDNTLQK-TDLF--EVAYDAIMRKALQMDIHKFQM 285
P + +KL +RF H + L +DL ++ + + A + I +
Sbjct: 404 QSRIPFSE-RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY-- 460
Query: 286 DPVD-ENLFTLMDKDS----DELFSERV-WELKQDPLYTTEKWIPQ--PPGYTTPGEITT 337
D D +L L S D + V WE T I P G + G +T
Sbjct: 461 DTFDGSDLRVLSGSISERIVDCIIRLPVKWE-TTTQFKAT--HILDFGPGGASGLGVLTH 517
Query: 338 RDKYG---RLVHGSAPDNGPSSE 357
R+K G R++ D P +
Sbjct: 518 RNKDGTGVRVIVAGTLDINPDDD 540
Score = 55.4 bits (133), Expect = 3e-08
Identities = 95/522 (18%), Positives = 153/522 (29%), Gaps = 188/522 (36%)
Query: 55 LNHFKNEGTCQTD---LVNHL---RDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASL 108
L F+N D L L D ++T+ + + + + P+ S S
Sbjct: 88 LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI---TARIMAKRPFDKKSNS- 143
Query: 109 GYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSG----------YQTCVFAHMVGPT 158
A + A N +L + G G G+ YQT + +VG
Sbjct: 144 -------ALFR-AVGEGNAQLVAIFG------GQGNTDDYFEELRDLYQT--YHVLVGDL 187
Query: 159 GKVIGVEHIPELIEASL---RNISKGNKDLLDSGRVRIVEADAR--EGYLPEAPYDVIYY 213
K E + ELI +L + ++G L+ + + YL P
Sbjct: 188 IKFSA-ETLSELIRTTLDAEKVFTQG----LNILEW-LENPSNTPDKDYLLSIP------ 235
Query: 214 GGCVSEVPSRVLNQL-------KKGGRILAPIGPMDDFQKLTQI---------------- 250
+S P + QL K G P + T
Sbjct: 236 ---IS-CPLIGVIQLAHYVVTAKLLG--FTPGELRSYLKGATGHSQGLVTAVAIAETDSW 289
Query: 251 DRFHDNTLQK-TDLFEV---AYDAIMRKALQMDIHKFQMDPVD--ENLFTLMDKDSDELF 304
+ F + + T LF + Y+A +L I + D ++ E + + M
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE---DSLENNEGVPSPM-------L 339
Query: 305 SERVWELKQDPLYTTEKWIPQPPGYTTPGE---ITTRDKYGRLVHGSAPDN----GPSSE 357
S + L Q+ + + ++ + + G+ I+ LV+G N GP
Sbjct: 340 S--ISNLTQEQV---QDYVNKTNSHLPAGKQVEIS-------LVNG--AKNLVVSGPPQ- 384
Query: 358 RSIAHILDLCYLNLH-RGAKV----------------------LEIGSG--SGYLA---- 388
L LNL R AK L + S S L
Sbjct: 385 -------SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASD 437
Query: 389 TLMAHLVGPTGHVTGLEHMMDIAIESI----------ANISTNHIDLIANETIE------ 432
+ LV +V+ + I + +IS +D I ++
Sbjct: 438 LINKDLVK--NNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQ 495
Query: 433 -IIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTG 473
HILD G G SG L L TG
Sbjct: 496 FKATHILDF-------GP-----GGASG-LGVLTHRNKDGTG 524
Score = 50.0 bits (119), Expect = 2e-06
Identities = 86/454 (18%), Positives = 140/454 (30%), Gaps = 157/454 (34%)
Query: 92 RGNFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVF 151
+ F P + G+A A ++ AE LV K L GY
Sbjct: 34 QEQFNKILP----EPTEGFA----ADDEPTTPAE-----LV--GKFL------GY----V 68
Query: 152 AHMVGPTGKVIGVEHIPELIEASL----RNISKGNKD-------LLDSGRVRIVEADARE 200
+ +V P+ V +++ L +GN D LL +V+
Sbjct: 69 SSLVEPSK----VGQFDQVLNLCLTEFENCYLEGN-DIHALAAKLLQENDTTLVKT---- 119
Query: 201 GYLPEAPYDVI--YYGGCV-------SEVPSRVLNQLKKGGRILAPI----GPMDDFQKL 247
++I Y + + S + + +G L I G DD+
Sbjct: 120 -------KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY--- 169
Query: 248 TQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQMDPVDENLFTLMDKDSDELFSER 307
F + L+ DL++ Y ++ + E L L+ D
Sbjct: 170 -----FEE--LR--DLYQT-YHVLVGDLI---------KFSAETLSELIRTTLDA----- 205
Query: 308 VWELKQDPLYTT----EKWIPQPPGYTTPGEITTRDKYGRLVHGSAPDNGPSSE-RSIAH 362
+ ++T +W+ P TP + Y L+ S P + P +AH
Sbjct: 206 ------EKVFTQGLNILEWLENPS--NTPDK-----DY--LL--SIPISCPLIGVIQLAH 248
Query: 363 ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAI------ESIA 416
+ K+L G L ++L G TGH GL + +AI ES
Sbjct: 249 YVVTA--------KLLGFTPGE-----LRSYLKGATGHSQGL--VTAVAIAETDSWESFF 293
Query: 417 NISTNHIDL---IANETIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTG 473
I + I E P+ L LE G + M L
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPN----TSLPPSILEDSLENNEGV---PSPM--LS---- 340
Query: 474 HVTGLEHMMDIAIESIANISTNHIDLIANETIEI 507
++ L ++ N TN L A + +EI
Sbjct: 341 -ISNLTQE---QVQDYVN-KTNS-HLPAGKQVEI 368
Score = 49.7 bits (118), Expect = 2e-06
Identities = 53/306 (17%), Positives = 85/306 (27%), Gaps = 122/306 (39%)
Query: 16 RPGYS----QVYTEGDIQNEDDFCRKDMDEFPEGHWVIPPPDNLNHFKNEGTCQTDLVNH 71
R YS + +G ++ E F K+++E + L+
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIF--KEINEHSTSYTFRSEKGLLS--------------- 1727
Query: 72 LRDIGKIRTERVAQ--------AFYKV--DRGNFANEEPYQDVSA--SLG-Y------AG 112
T+ Q A ++ +G P A SLG Y A
Sbjct: 1728 -------ATQ-FTQPALTLMEKAAFEDLKSKGLI----PADATFAGHSLGEYAALASLAD 1775
Query: 113 VMNAPNQIADAAENLKL--HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPEL 170
VM+ I E + + A D S Y + A G E + +
Sbjct: 1776 VMS----IESLVEVVFYRGMTMQVAVPRDELGRSNYG--MIAINPGRVAASFSQEALQYV 1829
Query: 171 IEASLRNISKGNKDLLDSGRVRIVEADAREGY-LPEAPYDVIYYGGCVS--EVPSRVLNQ 227
+E + K L V IV Y + Y V G + + + VLN
Sbjct: 1830 VE----RVGKRTGWL-----VEIV------NYNVENQQY-VA--AGDLRALDTVTNVLNF 1871
Query: 228 LKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQMDP 287
+K LQK D+ E+ ++
Sbjct: 1872 IK----------------------------LQKIDIIELQ-------------KSLSLEE 1890
Query: 288 VDENLF 293
V+ +LF
Sbjct: 1891 VEGHLF 1896
Score = 47.0 bits (111), Expect = 1e-05
Identities = 50/379 (13%), Positives = 97/379 (25%), Gaps = 163/379 (43%)
Query: 175 LRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEV----PSR--VLNQL 228
L SK +D+ + AD + + YG + ++ P +
Sbjct: 1635 LYKTSKAAQDVWN-------RADN---HFKDT------YGFSILDIVINNPVNLTIHFGG 1678
Query: 229 KKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQMDPV 288
+KG RI +++ + FE D
Sbjct: 1679 EKGKRI------RENYSAMI---------------FETIVDG---------------KLK 1702
Query: 289 DENLFTLMDKDSDELFSERVWELKQDPLYTTEKWIPQP---------------PGYTTP- 332
E +F K+ +E + + ++ L T+ QP G
Sbjct: 1703 TEKIF----KEINEHSTSYTFRSEKGLLSATQ--FTQPALTLMEKAAFEDLKSKGLIPAD 1756
Query: 333 --------GEITTRDKYGRLVHGSAPDNGPSSERSIAHIL---DLCYLNLHRG---AKVL 378
GE Y L S+A ++ L + +RG +
Sbjct: 1757 ATFAGHSLGE------YAALA-------------SLADVMSIESLVEVVFYRGMTMQVAV 1797
Query: 379 EIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIPHIL 438
++A + P A++ + ++ + T
Sbjct: 1798 PRDELGRSNYGMIA--INPGRVAASFS---QEALQYV-------VERVGKRT-------- 1837
Query: 439 DLCYLNLHRGAKVLEI----GSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST 494
++EI Y+A G + L D + I
Sbjct: 1838 ----------GWLVEIVNYNVENQQYVA---------AGDLRAL----DTVTNVLNFIKL 1874
Query: 495 NHIDLIA---NETIEIIRE 510
ID+I + ++E +
Sbjct: 1875 QKIDIIELQKSLSLEEVEG 1893
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 55.1 bits (132), Expect = 1e-08
Identities = 27/218 (12%), Positives = 61/218 (27%), Gaps = 16/218 (7%)
Query: 117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLR 176
P+ + H + ++D+G G G T A + P ++IG + +I+ +
Sbjct: 22 PSDFYKMI--DEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEV 79
Query: 177 NISKGNKDLLDSGRVRIVEADA------REGYLPEAPYDVIYYGGC-----VSEVPSRVL 225
V + + + + D+I C +
Sbjct: 80 IKEGSPDTY---KNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAY 136
Query: 226 NQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQM 285
L+K G I F + D ++ R L+ + +
Sbjct: 137 ANLRKDGTIAIWGYADPIFPDYPEFDDLMIEVPYGKQGLGPYWEQPGRSRLRNMLKDSHL 196
Query: 286 DPVDENLFTLMDKDSDELFSERVWELKQDPLYTTEKWI 323
DP + + ++++ + K +
Sbjct: 197 DPELFHDIQVSYFCAEDVRDKVKLHQHTKKPLLIRKQV 234
Score = 40.0 bits (93), Expect = 0.001
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 6/68 (8%)
Query: 432 EIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIES 488
+ I + ++++G G G MA + P + G + M+ A
Sbjct: 24 DFYKMIDEYH---DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVI 80
Query: 489 IANISTNH 496
+
Sbjct: 81 KEGSPDTY 88
Score = 39.3 bits (91), Expect = 0.002
Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Query: 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIANISTNH 422
+ ++++G G G MA + P + G + M+ A +
Sbjct: 32 YHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTY 88
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 54.8 bits (132), Expect = 2e-08
Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 20/127 (15%)
Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
L+ G +LDLG G+G T A +V+G ++ +IE + +N
Sbjct: 53 LNPQPGEFILDLGCGTGQLTEKIAQ---SGAEVLGTDNAATMIEKARQN----------Y 99
Query: 189 GRVRIVEADAREGYLPEAPYDVIYYGGCVSEVP------SRVLNQLKKGGRILAPIGPMD 242
+ ADAR + + P D ++ + V + + LK GGR +A G
Sbjct: 100 PHLHFDVADARN-FRVDKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKG 158
Query: 243 DFQKLTQ 249
+ + + +
Sbjct: 159 NIKYILE 165
Score = 39.4 bits (92), Expect = 0.002
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIES 414
+ +L L LN G +L++G G+G L + V G M++ A ++
Sbjct: 44 QYGEDLLQL--LNPQPGEFILDLGCGTGQLT---EKIAQSGAEVLGTDNAATMIEKARQN 98
Query: 415 IANISTNHIDL 425
++ + D
Sbjct: 99 YPHLHFDVADA 109
Score = 39.4 bits (92), Expect = 0.002
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNH 496
L LN G +L++G G+G L + V G M++ A ++ ++ +
Sbjct: 50 LQLLNPQPGEFILDLGCGTGQLT---EKIAQSGAEVLGTDNAATMIEKARQNYPHLHFDV 106
Query: 497 IDL 499
D
Sbjct: 107 ADA 109
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 53.0 bits (127), Expect = 4e-08
Identities = 29/190 (15%), Positives = 63/190 (33%), Gaps = 19/190 (10%)
Query: 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK 183
+ ++ A+VLD+G G GY T + K +GV+ +I+ +
Sbjct: 44 IPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTG---YKAVGVDISEVMIQKGKERGEGPD- 99
Query: 184 DLLDSGRVRIVEADAREGYLPEAPYDVIY--YGGCVSEVPSRVLNQ----LKKGGRILAP 237
+ ++ D ++ I +E P R LN+ LK G
Sbjct: 100 -------LSFIKGDLSSLPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIA 152
Query: 238 IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKA--LQMDIHKFQMDPVDENLFTL 295
I + R + + + ++ ++++ +D V+E +
Sbjct: 153 ILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGVYKRGVNEKMLGQ 212
Query: 296 MDKDSDELFS 305
+ D + +
Sbjct: 213 LSTDLQQSLT 222
Score = 39.9 bits (93), Expect = 0.001
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 363 ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIE 413
I+ + + A+VL++G G GY ++ G+ E M+ E
Sbjct: 43 IIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTG---YKAVGVDISEVMIQKGKE 93
Score = 39.9 bits (93), Expect = 0.001
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 437 ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIE 487
I+ + + A+VL++G G GY ++ G+ E M+ E
Sbjct: 43 IIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTG---YKAVGVDISEVMIQKGKE 93
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann
superfamily, S-adenosyl-L-M (SAM) binding, nucleolus;
HET: SAM; 1.73A {Aeropyrum pernix}
Length = 233
Score = 52.8 bits (126), Expect = 5e-08
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 14/118 (11%)
Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
+L + +G ++L LG SG + ++GP G++ GVE P ++ L + + +
Sbjct: 72 ELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMR-DLLTVVRDRR---- 126
Query: 188 SGRVRIVEADAR--EGYLPEAPY-DVIYYGGCVSEVPSRVLNQ----LKKGGRILAPI 238
+ + DAR E Y D +Y E + V+ L+ GG +L I
Sbjct: 127 --NIFPILGDARFPEKYRHLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMAI 182
Score = 41.2 bits (96), Expect = 4e-04
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 368 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEH---MMDIAIESIANISTNHID 424
L + G ++L +G SG A+ M+ ++GP G + G+E +M + + N
Sbjct: 72 ELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLT-VVRDRRNIFP 130
Query: 425 LIANET 430
++ +
Sbjct: 131 ILGDAR 136
Score = 41.2 bits (96), Expect = 4e-04
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 442 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEH---MMDIAIESIANISTNHID 498
L + G ++L +G SG A+ M+ ++GP G + G+E +M + + N
Sbjct: 72 ELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLT-VVRDRRNIFP 130
Query: 499 LIANET 504
++ +
Sbjct: 131 ILGDAR 136
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 50.0 bits (120), Expect = 2e-07
Identities = 22/166 (13%), Positives = 54/166 (32%), Gaps = 37/166 (22%)
Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
+ ++D G G+G+ K+ ++ ++
Sbjct: 12 NIFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEKFD-------- 60
Query: 188 SGRVRIVEADAREGYLPEAPYDVIYYGGCVSEV--PSRVLNQ----LKKGGRIL------ 235
I +D +E +P+ D I + ++ V+++ LK GR++
Sbjct: 61 ---SVITLSDPKE--IPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRK 115
Query: 236 --APIGP-----MDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRK 274
IGP MD+ + F ++ + + ++++
Sbjct: 116 ENTGIGPPLSIRMDEKDYMGWFSNFV--VEKRFNPTPYHFGLVLKR 159
Score = 42.7 bits (101), Expect = 5e-05
Identities = 5/56 (8%), Positives = 18/56 (32%), Gaps = 6/56 (10%)
Query: 366 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANI 418
L + + +++ G G+G+ + + + + E ++
Sbjct: 10 LPNIFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEKFDSV 62
Score = 42.7 bits (101), Expect = 5e-05
Identities = 5/56 (8%), Positives = 18/56 (32%), Gaps = 6/56 (10%)
Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANI 492
L + + +++ G G+G+ + + + + E ++
Sbjct: 10 LPNIFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEKFDSV 62
>3ll7_A Putative methyltransferase; methytransferase, structural genomics,
MCSG, PSI-2, protein initiative; HET: MSE; 1.80A
{Porphyromonas gingivalis}
Length = 410
Score = 52.1 bits (124), Expect = 2e-07
Identities = 32/135 (23%), Positives = 44/135 (32%), Gaps = 25/135 (18%)
Query: 130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG 189
+ +G KV+DL G G + I +E E A+ NI L +
Sbjct: 90 FIREGTKVVDLTGGLGIDFIALMSKA---SQGIYIERNDETAVAARHNIPLL---LNEGK 143
Query: 190 RVRIVEADAREGYLPEAP---YDVIY---------------YGGCVSEVPSRVLNQLKKG 231
V I+ D +E YLP D IY C ++ L
Sbjct: 144 DVNILTGDFKE-YLPLIKTFHPDYIYVDPARRSGADKRVYAIADCEPDLIPLATELLPFC 202
Query: 232 GRILAPIGPMDDFQK 246
ILA + PM D
Sbjct: 203 SSILAKLSPMIDLWD 217
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 50.7 bits (121), Expect = 2e-07
Identities = 22/134 (16%), Positives = 45/134 (33%), Gaps = 17/134 (12%)
Query: 119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNI 178
+I L ++ KVLDL G G + + +V+GV+ ++I +
Sbjct: 24 RIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYA 80
Query: 179 SKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVP--------SRVLNQLKK 230
+ V + DAR+ + +D + + + V LK
Sbjct: 81 KSRESN------VEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKP 134
Query: 231 GGRILAPIGPMDDF 244
G+ + + +
Sbjct: 135 SGKFIMYFTDLREL 148
Score = 44.5 bits (105), Expect = 3e-05
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 411 AIESIANISTNHIDLIANETIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVG 470
+ + + D+ + E I + L + + KVL++ G G + L+
Sbjct: 2 GFKEYYRVFPTYTDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG- 60
Query: 471 PTGHVTGL---EHMMDIAIE 487
V G+ E M+ A E
Sbjct: 61 --FEVVGVDISEDMIRKARE 78
Score = 41.0 bits (96), Expect = 4e-04
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Query: 352 NGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMM 408
N I + L + + KVL++ G G + L+ V G+ E M+
Sbjct: 17 NSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMI 73
Query: 409 DIAIE 413
A E
Sbjct: 74 RKARE 78
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 51.4 bits (123), Expect = 2e-07
Identities = 22/116 (18%), Positives = 33/116 (28%), Gaps = 14/116 (12%)
Query: 127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIE-ASLRNISKGNKDL 185
+ L AK LDLG+G G G + + P + N G D
Sbjct: 76 MTGVLQRQAKGLDLGAGYGGAARFLVRKFGV--SIDCLNIAPVQNKRNEEYNNQAGLAD- 132
Query: 186 LDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSR------VLNQLKKGGRIL 235
+ + E + YD I+ P + LK G +
Sbjct: 133 ----NITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMA 184
Score = 38.3 bits (89), Expect = 0.005
Identities = 18/88 (20%), Positives = 25/88 (28%), Gaps = 20/88 (22%)
Query: 347 GSAPDNGPSSERSIAHILDLC-----YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHV 401
D E S+ L L R AK L++G+G G A + G +
Sbjct: 51 KEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV--SI 108
Query: 402 TGLEHMMDIAIESIANISTNHIDLIANE 429
L NI+ E
Sbjct: 109 DCL------------NIAPVQNK-RNEE 123
Score = 36.7 bits (85), Expect = 0.014
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 15/61 (24%)
Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIAN 502
L R AK L++G+G G A + G + L NI+
Sbjct: 78 GVLQRQAKGLDLGAGYGGAARFLVRKFGV--SIDCL------------NIAPVQNK-RNE 122
Query: 503 E 503
E
Sbjct: 123 E 123
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 50.2 bits (120), Expect = 4e-07
Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 25/120 (20%)
Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
+ L + +KVLD+GSG G G G++ ++ + +S N
Sbjct: 50 DIELNENSKVLDIGSGLGGGCMYINEKYGA--HTHGIDICSNIVNMANERVSGNN----- 102
Query: 188 SGRVRIVEADAREGYLPEAPYDVIY------------YGGCVSEVPSRVLNQLKKGGRIL 235
++ D PE +D+IY + + LK G +L
Sbjct: 103 --KIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKC-YKW---LKPTGTLL 156
Score = 39.8 bits (93), Expect = 0.001
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 17/76 (22%)
Query: 354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE 413
+ IL + L+ +KVL+IGSG G + G H G+
Sbjct: 38 SGGLEATKKILSD--IELNENSKVLDIGSGLGGGCMYINEKYGA--HTHGI--------- 84
Query: 414 SIANISTNHIDLIANE 429
+I +N ++ +ANE
Sbjct: 85 ---DICSNIVN-MANE 96
Score = 37.5 bits (87), Expect = 0.007
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 17/73 (23%)
Query: 431 IEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA 490
+E IL + L+ +KVL+IGSG G + G H G+
Sbjct: 41 LEATKKILSD--IELNENSKVLDIGSGLGGGCMYINEKYGA--HTHGI------------ 84
Query: 491 NISTNHIDLIANE 503
+I +N ++ +ANE
Sbjct: 85 DICSNIVN-MANE 96
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 50.3 bits (120), Expect = 5e-07
Identities = 35/171 (20%), Positives = 68/171 (39%), Gaps = 21/171 (12%)
Query: 76 GKIRTERVAQAFYKV-DRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDG 134
G +RT V +RG + Y + +A Y ++ + ++A E
Sbjct: 27 GPVRTPHADVLLASVGERGVLC--DFYDEGAADT-YRDLIQDADGTSEAREFATRTGPVS 83
Query: 135 AKVLDLGSGSGYQTCVFAHMVGPTG-KVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI 193
VL+L +G G T F + G +V +E ++ A + +++ D+ D R +
Sbjct: 84 GPVLELAAGMGRLTFPFLDL----GWEVTALELSTSVLAAFRKRLAEAPADVRD--RCTL 137
Query: 194 VEADAREGYLPEAPYDVIY-YGGCVSEVP--------SRVLNQLKKGGRIL 235
V+ D L + + + G ++E+ + V L+ GG+ L
Sbjct: 138 VQGDMSAFALDK-RFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFL 187
Score = 32.2 bits (73), Expect = 0.34
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 8/55 (14%)
Query: 363 ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGH-VTGL---EHMMDIAIE 413
+ VLE+ +G G L L G VT L ++ +
Sbjct: 72 AREFATRTGPVSGPVLELAAGMGRLTFPFLDL----GWEVTALELSTSVLAAFRK 122
Score = 32.2 bits (73), Expect = 0.34
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 8/55 (14%)
Query: 437 ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGH-VTGL---EHMMDIAIE 487
+ VLE+ +G G L L G VT L ++ +
Sbjct: 72 AREFATRTGPVSGPVLELAAGMGRLTFPFLDL----GWEVTALELSTSVLAAFRK 122
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 50.3 bits (119), Expect = 6e-07
Identities = 33/174 (18%), Positives = 57/174 (32%), Gaps = 11/174 (6%)
Query: 127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLL 186
LK G VLDLG G+ T A GP+ +++G++ LI ++ +NI + L
Sbjct: 40 LKPEWFRGRDVLDLGCNVGHLTLSIACKWGPS-RMVGLDIDSRLIHSARQNIRHYLSEEL 98
Query: 187 DSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDDFQK 246
+ EG P+ + P+ D
Sbjct: 99 RLPPQTLEGDPGAEGEEGTTTVRKRSC------FPASLTASRGPIAAPQVPLDGADTSVF 152
Query: 247 LTQIDRFHDNTLQKTDLFEVA----YDAIMRKALQMDIHKFQMDPVDENLFTLM 296
+ N + D A YD ++ +L +H D + +F +
Sbjct: 153 PNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRI 206
Score = 37.2 bits (85), Expect = 0.009
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHID 424
RG VL++G G+L +A GP+ + GL+ + + NI +
Sbjct: 43 EWFRGRDVLDLGCNVGHLTLSIACKWGPS-RMVGLDIDSRLIHSARQNIRHYLSE 96
Score = 37.2 bits (85), Expect = 0.009
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 444 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHID 498
RG VL++G G+L +A GP+ + GL+ + + NI +
Sbjct: 43 EWFRGRDVLDLGCNVGHLTLSIACKWGPS-RMVGLDIDSRLIHSARQNIRHYLSE 96
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.4 bits (122), Expect = 6e-07
Identities = 61/430 (14%), Positives = 127/430 (29%), Gaps = 125/430 (29%)
Query: 24 TEGDIQNEDDFCRK-DMDEFPEGHWVIPPPDNLN--------HFKNEGTCQTDLVNHLRD 74
E ++ + D + ++ K++ LV L +
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV--LLN 252
Query: 75 IGKIRTERVAQAFY---KV-----DRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAEN 126
+ + + AF K+ + +SA+ ++ + E
Sbjct: 253 V---QNAKAWNAFNLSCKILLTTRFKQVT------DFLSAATTTHISLDHHSMTLTPDEV 303
Query: 127 LKLHLVDGAKVLDLG---------SGSGYQTCVFAHMV--GPTG----KVIGVEHIPELI 171
L L K LD + + + + A + G K + + + +I
Sbjct: 304 KSL-L---LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 172 EASLRNISKGNKDLLDSGRVRIVEADAREGY-----LPEA---PYDV--IYYGGCVSEVP 221
E+SL ++L+ A+ R+ + P + P + + + +
Sbjct: 360 ESSL--------NVLEP-------AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 222 SRVLNQLKKGGRILAPIGP-----------MDDFQKLTQIDRFHDNTLQKTDLFEVAYDA 270
V+N+L K L P ++ KL H + + Y+
Sbjct: 405 MVVVNKLHK--YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH-------YN- 454
Query: 271 IMRKALQMDIHKFQMDPVDENLFT-----LMDKDSDELFSERVWELKQDPLYTTEKWIPQ 325
I + D +D+ ++ L + + E + + ++ +++ Q
Sbjct: 455 IPKT---FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL----FRM--VFLDFRFLEQ 505
Query: 326 -----PPGYTTPGEI--TTRD--KYGRLVHGSAPDNGPSSERSIAHILDL---CYLNLHR 373
+ G I T + Y + DN P ER + ILD NL
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYIC----DNDPKYERLVNAILDFLPKIEENLIC 561
Query: 374 G--AKVLEIG 381
+L I
Sbjct: 562 SKYTDLLRIA 571
Score = 44.5 bits (104), Expect = 9e-05
Identities = 83/619 (13%), Positives = 171/619 (27%), Gaps = 179/619 (28%)
Query: 21 QVYTEGDI--QNEDDFCR----KDMDEFPEGHWVIPPPDNLNHFKNEGT--CQTDLVNHL 72
Y DI ED F KD+ + P+ ++ + ++H T L
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKS--ILSKEE-IDHIIMSKDAVSGTLR---L 67
Query: 73 RDIGKIRTERVAQAFYK-VDRGNFA---------NEEPYQDVSASLGYAGVMNAPNQI-- 120
+ E + Q F + V R N+ +P + + NQ+
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 121 ------ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAH-MVGPTGKVIGVEHIPELIEA 173
L+ L L+L V ++G +GK +
Sbjct: 128 KYNVSRLQPYLKLRQAL------LELRPAKN----VLIDGVLG-SGKTW-------VALD 169
Query: 174 SLRN-------------ISKGN----KDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGC 216
+ ++ N + +L+ + + + D + ++
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 217 VSEVPSRVLNQLKKGGR---ILAPIGPMDDFQKLTQIDRFHDN---TLQKTDLFEVAYDA 270
+ R+L + K +L + Q + F + L T +V D
Sbjct: 230 IQAELRRLL-KSKPYENCLLVL------LNVQNAKAWNAF-NLSCKILLTTRFKQVT-DF 280
Query: 271 IMRKALQMDIHKFQMDPVDENLFTLMDKDSDELFSERV---------------------- 308
+ +D + TL + L + +
Sbjct: 281 L-------SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 309 WELKQDPLYTTEKW-----------IPQPPGYTTPGEITTRDKYGRLVHGSA--PDN--- 352
E +D L T + W I P E R + RL + P +
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY--RKMFDRL----SVFPPSAHI 387
Query: 353 ---------GPSSERSIAHILDLC--YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHV 401
+ + +++ Y + + K I S YL + H
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 402 TGLEH--------MMDIAIESIANISTNHI-----DLIANETIEIIPHILDLCYLNLH-R 447
+ ++H D+ + +HI ++ E + + + +L+
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV----FLDFRFL 503
Query: 448 GAKVLEIGS---GSGYLATLMAHLVGPTGHVT----GLEHMMDIAIESIANISTN----- 495
K+ + SG + + L ++ E +++ ++ + I N
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563
Query: 496 HIDLI----ANETIEIIRE 510
+ DL+ E I E
Sbjct: 564 YTDLLRIALMAEDEAIFEE 582
Score = 39.1 bits (90), Expect = 0.003
Identities = 51/258 (19%), Positives = 89/258 (34%), Gaps = 56/258 (21%)
Query: 238 IGPMD-DFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKAL---QMDIHKFQMDPVDEN-- 291
G ++ + + F D + D +V D + + L ++D H
Sbjct: 11 TGEHQYQYKDILSV--FEDAFVDNFDCKDVQ-D-MPKSILSKEEID-HIIMSKDAVSGTL 65
Query: 292 -LF-TLMDKDSD--ELFSERVWELKQDPLYTTEKWI-------PQPPGYTTPGEITTRDK 340
LF TL+ K + + F E V L+ + Y K++ + P T I RD+
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEV--LRIN--Y---KFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 341 YGRLVHGSAPDNGPSSERSIAHILDL--CYLNLHRGAKVLEIG-SGSG--YLA--TLMAH 393
A N + L L L L VL G GSG ++A +++
Sbjct: 119 LYNDNQVFAKYNVSRLQ----PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 394 LVGPTGHVTGLEHMMDIAIE--SIANISTNHIDLIANETIEIIPHILD--LCYLNLHRGA 449
++ MD I ++ N ++ L E ++ + + +D + H
Sbjct: 175 ---------KVQCKMDFKIFWLNLKNCNSPETVL---EMLQKLLYQIDPNWTSRSDHSSN 222
Query: 450 KVLEIGSGSGYLATLMAH 467
L I S L L+
Sbjct: 223 IKLRIHSIQAELRRLLKS 240
Score = 34.1 bits (77), Expect = 0.13
Identities = 56/447 (12%), Positives = 121/447 (27%), Gaps = 145/447 (32%)
Query: 1 MTTKLIEKTTTNLVYRPGYSQ--VYTEGDIQNEDD--FCRKDMDEFPEGHWVIPPPDN-- 54
M KL+ + N R +S IQ E K + V+ N
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP---YENCLLVL---LNVQ 254
Query: 55 ----LNHFKNEGTCQTDLVNHLRDIG-----------KIRTERVAQAFYKVD-RGNFAN- 97
N F +C+ L+ R I + + + +
Sbjct: 255 NAKAWNAF--NLSCKI-LLT-TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 98 ------EEPYQDVSASLGYAGVMNAPNQIADAAENLKLHL--------VDGAKVLDLGSG 143
+ P + ++ + P +++ AE+++ L V+ K+ +
Sbjct: 311 LDCRPQDLPREVLTTN---------PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 144 S-----------GYQTC-VFAHMVGPTGKVIGV------EHIPELIEASLRNIS---KGN 182
S + VF ++ + + ++ L S K
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 183 K-------DLLDSGRV----------RIVEA-DAREGYLPE---APYDVIYYGGCVSEVP 221
K + +V IV+ + + + + PY Y+
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF-------- 473
Query: 222 SRVLNQLKKGGRILAPIGPMDDFQKLTQI--D-RFHDNTLQKTDLFEVAYDAIMRKALQM 278
+ + G L I + + D RF + ++ A +I+ Q+
Sbjct: 474 ---YSHI---GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 279 DIHKFQMDPVDENLFTLMDKDSDELFSERVWELKQDPLYTTEKWIPQPPGYTTPGEITTR 338
+K + D+D + V + ++P+ E
Sbjct: 528 KFYKPYI------------CDNDPKYERLVNAI--------LDFLPK------IEENLIC 561
Query: 339 DKYGRLVH-GSAPDNGP---SSERSIA 361
KY L+ ++ + + +
Sbjct: 562 SKYTDLLRIALMAEDEAIFEEAHKQVQ 588
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 49.0 bits (117), Expect = 1e-06
Identities = 21/126 (16%), Positives = 46/126 (36%), Gaps = 17/126 (13%)
Query: 118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
+ + ++ + +LDLG+G+G + P V+ +++E
Sbjct: 29 DDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLE----- 82
Query: 178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVP--------SRVLNQLK 229
+ +V+ +EAD + Y E YD++ + + R + LK
Sbjct: 83 --IAKNRFRGNLKVKYIEADYSK-YDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILK 139
Query: 230 KGGRIL 235
+ G +
Sbjct: 140 ESGIFI 145
Score = 35.9 bits (83), Expect = 0.017
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDI 410
P + + + +L++G+G+G L+ + P T + E M++I
Sbjct: 26 PCFDDFYGVSVSIA-SVDTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEI 83
Query: 411 AIESIAN 417
A
Sbjct: 84 AKNRFRG 90
Score = 35.5 bits (82), Expect = 0.026
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 444 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIAN 491
+L++G+G+G L+ + P T + E M++IA
Sbjct: 41 VDTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRG 90
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 48.4 bits (115), Expect = 2e-06
Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 23/128 (17%)
Query: 117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIE-ASL 175
+ A AA VL+L SG+GY T + + +V ++ E+I A
Sbjct: 30 MDSAAPAALERLRAGNIRGDVLELASGTGYWTRHLSGLA---DRVTALDGSAEMIAEAGR 86
Query: 176 RNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVP--------SRVLNQ 227
+ V + D + + P+ +D +++ ++ VP V +
Sbjct: 87 HGLD----------NVEFRQQDLFD-WTPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSA 135
Query: 228 LKKGGRIL 235
+ GG +
Sbjct: 136 VAPGGVVE 143
Score = 35.3 bits (81), Expect = 0.025
Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 7/78 (8%)
Query: 337 TRDKYGRLVHGSAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVG 396
Y P + + L+ + VLE+ SG+GY ++ L
Sbjct: 11 QLSYYRARASEYDATFVPYMDSAAPAALER-LRAGNIRGDVLELASGTGYWTRHLSGLA- 68
Query: 397 PTGHVTGL---EHMMDIA 411
VT L M+ A
Sbjct: 69 --DRVTALDGSAEMIAEA 84
Score = 34.9 bits (80), Expect = 0.038
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIA 485
+ VLE+ SG+GY ++ L VT L M+ A
Sbjct: 42 RAGNIRGDVLELASGTGYWTRHLSGLA---DRVTALDGSAEMIAEA 84
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 48.7 bits (116), Expect = 2e-06
Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 12/84 (14%)
Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
+ L DLG G G T + + G++ +++E +
Sbjct: 29 VPLERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADR----------L 77
Query: 189 GRVRIVEADAREGYLPEAPYDVIY 212
+AD + P D++Y
Sbjct: 78 PNTNFGKADLAT-WKPAQKADLLY 100
Score = 39.8 bits (93), Expect = 0.001
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 366 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNH 422
L + L R ++G G G L+ +TG+ + M++ A + + N +
Sbjct: 26 LAQVPLERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADRLPNTNFGK 84
Query: 423 IDL 425
DL
Sbjct: 85 ADL 87
Score = 39.8 bits (93), Expect = 0.001
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNH 496
L + L R ++G G G L+ +TG+ + M++ A + + N +
Sbjct: 26 LAQVPLERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADRLPNTNFGK 84
Query: 497 IDL 499
DL
Sbjct: 85 ADL 87
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 48.3 bits (115), Expect = 2e-06
Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI 193
++ DLG+G+G A + +V E E+ E + R++ + S R+ +
Sbjct: 37 ACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAF-SARIEV 94
Query: 194 VEADARE-------GYLPEAPYDVI 211
+EAD LP+ + +
Sbjct: 95 LEADVTLRAKARVEAGLPDEHFHHV 119
Score = 39.9 bits (93), Expect = 0.001
Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 10/92 (10%)
Query: 368 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIANISTNHID 424
+ R ++ ++G+G+G +A + VT E M + A S+
Sbjct: 31 LVADDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAFS 89
Query: 425 LIANETIEIIPHILDLCYLNLHRGAKVLEIGS 456
IE++ D+ R L
Sbjct: 90 ----ARIEVLE--ADVTLRAKARVEAGLPDEH 115
Score = 39.9 bits (93), Expect = 0.001
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 442 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIANISTNHID 498
+ R ++ ++G+G+G +A + VT E M + A S+
Sbjct: 31 LVADDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAFS 89
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 46.8 bits (111), Expect = 3e-06
Identities = 22/141 (15%), Positives = 43/141 (30%), Gaps = 25/141 (17%)
Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI 193
VLD G+G G K G+E ++ + + N ++ I
Sbjct: 24 DKTVLDCGAGGDLPPLSIFVEDG--YKTYGIEISDLQLKKAENFSRENNF------KLNI 75
Query: 194 VEADAREGYLPEAPYDVIY------------YGGCVSEVPSRVLNQLKKGGRILAPIGPM 241
+ D R+ + +Y + E+ RV LK GG
Sbjct: 76 SKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEI-KRV---LKPGGLACINFLTT 131
Query: 242 DDFQKLTQIDRFHDNTLQKTD 262
D + + ++ + + +
Sbjct: 132 KDE-RYNKGEKIGEGEFLQLE 151
Score = 34.5 bits (79), Expect = 0.053
Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 10/63 (15%)
Query: 354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDI 410
P R + + + VL+ G+G + G G+ + +
Sbjct: 9 PQLYRFLKYCN-----ESNLDKTVLDCGAGGDLPPLSIFVEDG--YKTYGIEISDLQLKK 61
Query: 411 AIE 413
A
Sbjct: 62 AEN 64
Score = 34.5 bits (79), Expect = 0.054
Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 6/57 (10%)
Query: 434 IPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIE 487
+ L C + VL+ G+G + G G+ + + A
Sbjct: 11 LYRFLKYC-NESNLDKTVLDCGAGGDLPPLSIFVEDG--YKTYGIEISDLQLKKAEN 64
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 47.2 bits (112), Expect = 4e-06
Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 21/127 (16%)
Query: 119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNI 178
QIA A + + L+LG G+G + I ++ ++E + I
Sbjct: 25 QIATAMASAVHPKGEEPVFLELGVGTGRIALPLI---ARGYRYIALDADAAMLEVFRQKI 81
Query: 179 SKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVP---------SRVLNQLK 229
+ + +V++V+ADAR LP+ + VP RV LK
Sbjct: 82 AGVD------RKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRV---LK 132
Query: 230 KGGRILA 236
GG +L
Sbjct: 133 PGGALLE 139
Score = 37.6 bits (87), Expect = 0.007
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 6/44 (13%)
Query: 371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIA 411
LE+G G+G +A L+ L M+++
Sbjct: 37 KGEEPVFLELGVGTGRIA---LPLIARGYRYIALDADAAMLEVF 77
Score = 37.6 bits (87), Expect = 0.007
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 6/44 (13%)
Query: 445 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIA 485
LE+G G+G +A L+ L M+++
Sbjct: 37 KGEEPVFLELGVGTGRIA---LPLIARGYRYIALDADAAMLEVF 77
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 47.0 bits (112), Expect = 5e-06
Identities = 31/200 (15%), Positives = 60/200 (30%), Gaps = 32/200 (16%)
Query: 125 ENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTG-KVIGVEHIPELIEASLRNISKGNK 183
E + + LDL G+G T V+ E++ +
Sbjct: 29 EKCVENNLVFDDYLDLACGTGNLTENLCPK----FKNTWAVDLSQEMLSEAENKFRSQGL 84
Query: 184 DLLDSGRVRIVEADAREGYLPEAPYDVIYYGGC----------VSEVPSRVLNQLKKGGR 233
R+ D + +D+I + + V N LK+GG
Sbjct: 85 K------PRLACQDISNLNINR-KFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGV 137
Query: 234 ILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQMDPVDENLF 293
+ I ++ + F+ + + +E ++ + M I F D +
Sbjct: 138 FIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFED---DLVSMYISFFV---RDGEFY 191
Query: 294 TLMDKDSDELFSERVWELKQ 313
K DE ER ++ +
Sbjct: 192 ----KRFDEEHEERAYKEED 207
Score = 34.3 bits (79), Expect = 0.057
Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 8/61 (13%)
Query: 357 ERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGH-VTGL---EHMMDIAI 412
++ I++ C N L++ G+G L + + + M+ A
Sbjct: 21 KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK----FKNTWAVDLSQEMLSEAE 76
Query: 413 E 413
Sbjct: 77 N 77
Score = 33.9 bits (78), Expect = 0.094
Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 8/55 (14%)
Query: 437 ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGH-VTGL---EHMMDIAIE 487
I++ C N L++ G+G L + + + M+ A
Sbjct: 27 IIEKCVENNLVFDDYLDLACGTGNLTENLCPK----FKNTWAVDLSQEMLSEAEN 77
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 46.4 bits (110), Expect = 5e-06
Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 19/115 (16%)
Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTG-KVIGVEHIPELIEASLRNISKGNKDLLD 187
+ + K+L L G G C A + G +V V + S ++K + +
Sbjct: 25 ANQIPQGKILCLAEGEGRNACFLASL----GYEVTAV-------DQSSVGLAKAKQLAQE 73
Query: 188 SG-RVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSR------VLNQLKKGGRIL 235
G ++ V+++ + + ++ I C R V LK GG +
Sbjct: 74 KGVKITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFI 128
Score = 29.8 bits (67), Expect = 1.4
Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 12/66 (18%)
Query: 368 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGH-VTG-------LEHMMDIAIESIANIS 419
N K+L + G G A +A L G+ VT L +A E I+
Sbjct: 24 VANQIPQGKILCLAEGEGRNACFLASL----GYEVTAVDQSSVGLAKAKQLAQEKGVKIT 79
Query: 420 TNHIDL 425
T +L
Sbjct: 80 TVQSNL 85
Score = 29.8 bits (67), Expect = 1.4
Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 12/66 (18%)
Query: 442 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGH-VTG-------LEHMMDIAIESIANIS 493
N K+L + G G A +A L G+ VT L +A E I+
Sbjct: 24 VANQIPQGKILCLAEGEGRNACFLASL----GYEVTAVDQSSVGLAKAKQLAQEKGVKIT 79
Query: 494 TNHIDL 499
T +L
Sbjct: 80 TVQSNL 85
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 46.1 bits (109), Expect = 7e-06
Identities = 14/101 (13%), Positives = 32/101 (31%), Gaps = 1/101 (0%)
Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
L + +V+DLG G G + ++ GV+ +E + + +
Sbjct: 24 ALKQSNARRVIDLGCGQGNLLKILLKD-SFFEQITGVDVSYRSLEIAQERLDRLRLPRNQ 82
Query: 188 SGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQL 228
R+++++ YD + + L
Sbjct: 83 WERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAF 123
Score = 36.8 bits (85), Expect = 0.009
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 368 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA 416
L +V+++G G G L ++ +TG+ D++ S+
Sbjct: 24 ALKQSNARRVIDLGCGQGNLLKILLKD-SFFEQITGV----DVSYRSLE 67
Score = 36.8 bits (85), Expect = 0.009
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 442 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA 490
L +V+++G G G L ++ +TG+ D++ S+
Sbjct: 24 ALKQSNARRVIDLGCGQGNLLKILLKD-SFFEQITGV----DVSYRSLE 67
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 46.0 bits (109), Expect = 8e-06
Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 10/119 (8%)
Query: 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVR 192
GA +LD+GS Y G I E + +++++N+ +++
Sbjct: 15 QGAILLDVGSDHAYLPI-ELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGL----KEKIQ 69
Query: 193 IVEADAREGYLPEAPYDVIYYGG----CVSEVPSRVLNQLKKGGR-ILAPIGPMDDFQK 246
+ A+ + VI G ++ + L +L R IL P DD +
Sbjct: 70 VRLANGLAAFEETDQVSVITIAGMGGRLIARILEEGLGKLANVERLILQPNNREDDLRI 128
Score = 35.6 bits (82), Expect = 0.024
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESI 415
S+R + + +GA +L++GS YL + G E + ++
Sbjct: 3 SKR-LELVASFV----SQGAILLDVGSDHAYLPIELVER-GQIKSAIAGEVVEGPYQSAV 56
Query: 416 ANISTNHID 424
N+ + +
Sbjct: 57 KNVEAHGLK 65
Score = 34.5 bits (79), Expect = 0.048
Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 445 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHID 498
+ +GA +L++GS YL + G E + ++ N+ + +
Sbjct: 13 VSQGAILLDVGSDHAYLPIELVER-GQIKSAIAGEVVEGPYQSAVKNVEAHGLK 65
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 46.2 bits (109), Expect = 9e-06
Identities = 25/154 (16%), Positives = 48/154 (31%), Gaps = 12/154 (7%)
Query: 85 QAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGS 144
+ +Y + P VS LG ++ + L ++ LD G+G
Sbjct: 47 KGWYG-KALEYWRTVP-ATVSGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGI 104
Query: 145 GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLP 204
G T + +E + ++E + ++L + + A LP
Sbjct: 105 GRITKNLLTKLY--ATTDLLEPVKHMLEEA-------KRELAGMPVGKFILASMETATLP 155
Query: 205 EAPYDVIYYGGCVSEVPSRVLNQ-LKKGGRILAP 237
YD+I + + K + L P
Sbjct: 156 PNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTP 189
Score = 29.3 bits (65), Expect = 2.9
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 366 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIANISTNH 422
+ L H ++ L+ G+G G + + + LE HM++ A +A +
Sbjct: 86 IASLPGHGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGMPVGK 143
Query: 423 IDLIANETIEIIPHILDL 440
L + ET + P+ DL
Sbjct: 144 FILASMETATLPPNTYDL 161
Score = 28.5 bits (63), Expect = 5.1
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIAN 491
+ L H ++ L+ G+G G + + + LE HM++ A +A
Sbjct: 86 IASLPGHGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAG 138
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
transferase; 1.90A {Geobacter sulfurreducens pca}
Length = 210
Score = 45.6 bits (109), Expect = 1e-05
Identities = 22/157 (14%), Positives = 46/157 (29%), Gaps = 44/157 (28%)
Query: 136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE 195
V+ G G G + FA + + +V+ ++ + +E + R + RV +
Sbjct: 59 LVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLI----DRVELQV 114
Query: 196 ADAREGYLPEAPYDVI-----------YYGGCVSEVPSRVLNQLKKGGRILAPIGPMDDF 244
D + D++ R+ L K ++A
Sbjct: 115 GDPLGIAAGQRDIDILFMDCDVFNGADVL--------ERMNRCLAKNALLIA-------- 158
Query: 245 QKLTQIDRFHDNTLQKTDLFEVAYDAI---MRKALQM 278
N L++ + E D +R+
Sbjct: 159 ----------VNALRRGSVAESHEDPETAALREFNHH 185
Score = 40.6 bits (96), Expect = 5e-04
Identities = 9/65 (13%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Query: 376 KVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESI--ANISTNHIDLIANET 430
V+ G G G + A + + V ++ ++ A + + + ++L +
Sbjct: 59 LVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLI-DRVELQVGDP 117
Query: 431 IEIIP 435
+ I
Sbjct: 118 LGIAA 122
Score = 40.2 bits (95), Expect = 7e-04
Identities = 9/70 (12%), Positives = 23/70 (32%), Gaps = 9/70 (12%)
Query: 450 KVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESI--ANISTNHIDLI---A 501
V+ G G G + A + + V ++ ++ A + + + ++L
Sbjct: 59 LVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLI-DRVELQVGDP 117
Query: 502 NETIEIIREF 511
R+
Sbjct: 118 LGIAAGQRDI 127
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 45.6 bits (108), Expect = 1e-05
Identities = 30/137 (21%), Positives = 46/137 (33%), Gaps = 24/137 (17%)
Query: 110 YAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTG-KVIGVEHIP 168
+ + A N I A + GAK+LD G G G + G V+G + P
Sbjct: 23 WRNLAAAGNDIYGEARLIDAMAPRGAKILDAGCGQGRIGGYLSKQ----GHDVLGTDLDP 78
Query: 169 ELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCV-----SEVPSR 223
LI+ + ++ R V D + E +D+I G V +
Sbjct: 79 ILIDYAKQDFP----------EARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREP 128
Query: 224 VLNQ----LKKGGRILA 236
L L GR +
Sbjct: 129 ALANIHRALGADGRAVI 145
Score = 34.4 bits (79), Expect = 0.043
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 373 RGAKVLEIGSGSGYLATLMAHLVGPTGH-VTGL---EHMMDIAIESIANI 418
RGAK+L+ G G G + ++ GH V G ++D A +
Sbjct: 46 RGAKILDAGCGQGRIGGYLSKQ----GHDVLGTDLDPILIDYAKQDFPEA 91
Score = 34.4 bits (79), Expect = 0.043
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 447 RGAKVLEIGSGSGYLATLMAHLVGPTGH-VTGL---EHMMDIAIESIANI 492
RGAK+L+ G G G + ++ GH V G ++D A +
Sbjct: 46 RGAKILDAGCGQGRIGGYLSKQ----GHDVLGTDLDPILIDYAKQDFPEA 91
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 45.6 bits (108), Expect = 1e-05
Identities = 32/198 (16%), Positives = 65/198 (32%), Gaps = 41/198 (20%)
Query: 98 EEPYQDVSASLGYAGVMNAPNQIADAAEN-LKLHL---VDGAKVLDLGSGSGYQTCVFAH 153
+ Y GY+ + + + AAE + V G +++DLG G G+
Sbjct: 4 QNIYDQPDFFAGYSQLGRSIEGLDGAAEWPALRAMLPEVGGLRIVDLGCGFGWFCRWAHE 63
Query: 154 MVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIY- 212
V+G++ +++ + + + AD + +LP+ +D+ Y
Sbjct: 64 H--GASYVLGLDLSEKMLARA--------RAAGPDTGITYERADLDKLHLPQDSFDLAYS 113
Query: 213 ---------YGGCVSEVPSRVLNQLKKGGR-ILAPIGPM------------DDFQKLTQI 250
V + L GG + + P+ + ++ I
Sbjct: 114 SLALHYVEDVARLFRTV-HQA---LSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPI 169
Query: 251 DRFHDNTLQKTDLFEVAY 268
DR+ +KTD
Sbjct: 170 DRYLVEGPRKTDWLAKGV 187
Score = 34.0 bits (78), Expect = 0.071
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 435 PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIA 485
P + + L G +++++G G G+ +V GL E M+ A
Sbjct: 33 PALRAM--LPEVGGLRIVDLGCGFGWFCRWAHEH--GASYVLGLDLSEKMLARA 82
Score = 33.2 bits (76), Expect = 0.14
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIA 411
G +++++G G G+ +V GL E M+ A
Sbjct: 42 VGGLRIVDLGCGFGWFCRWAHEH--GASYVLGLDLSEKMLARA 82
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.25A {Corynebacterium glutamicum}
Length = 221
Score = 44.6 bits (106), Expect = 3e-05
Identities = 8/80 (10%), Positives = 28/80 (35%), Gaps = 6/80 (7%)
Query: 366 LCYLNLHRGAK-VLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESI--ANIS 419
L G+ + I +G + + + + +T ++ A A S
Sbjct: 48 LAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYS 107
Query: 420 TNHIDLIANETIEIIPHILD 439
+ + + + ++++ + +
Sbjct: 108 PSRVRFLLSRPLDVMSRLAN 127
Score = 43.1 bits (102), Expect = 8e-05
Identities = 12/119 (10%), Positives = 34/119 (28%), Gaps = 17/119 (14%)
Query: 128 KLHLVDGAK-VLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLL 186
+G+ + + +G + + + ++ E + +
Sbjct: 50 ATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAG---Y 106
Query: 187 DSGRVRIVEADARE--GYLPEAPYDVIY-------YGGCVSEVPSRVLNQLKKGGRILA 236
RVR + + + L Y +++ V L++GG ++
Sbjct: 107 SPSRVRFLLSRPLDVMSRLANDSYQLVFGQVSPMDLKALVDA----AWPLLRRGGALVL 161
Score = 42.7 bits (101), Expect = 1e-04
Identities = 8/78 (10%), Positives = 26/78 (33%), Gaps = 6/78 (7%)
Query: 440 LCYLNLHRGAK-VLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESI--ANIS 493
L G+ + I +G + + + + +T ++ A A S
Sbjct: 48 LAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYS 107
Query: 494 TNHIDLIANETIEIIREF 511
+ + + + ++++
Sbjct: 108 PSRVRFLLSRPLDVMSRL 125
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 44.8 bits (106), Expect = 3e-05
Identities = 17/80 (21%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI 193
K++DL SG+G + + K++GVE L + + R+++ ++ I
Sbjct: 50 KGKIIDLCSGNGIIPLLLSTR--TKAKIVGVEIQERLADMAKRSVAYNQL----EDQIEI 103
Query: 194 VEADARE--GYLPEAPYDVI 211
+E D ++ +P+ D++
Sbjct: 104 IEYDLKKITDLIPKERADIV 123
Score = 38.6 bits (90), Expect = 0.003
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIA-NISTNHIDLI 426
R K++++ SG+G + L++ + G+E + D+A S+A N + I++I
Sbjct: 48 IRKGKIIDLCSGNGIIPLLLSTR--TKAKIVGVEIQERLADMAKRSVAYNQLEDQIEII 104
Score = 38.6 bits (90), Expect = 0.003
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 446 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIA-NISTNHIDLI 500
R K++++ SG+G + L++ + G+E + D+A S+A N + I++I
Sbjct: 48 IRKGKIIDLCSGNGIIPLLLSTR--TKAKIVGVEIQERLADMAKRSVAYNQLEDQIEII 104
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA,
2'-O-methylation, coiled-coil, methyltransfer binding,
rRNA processing; HET: SAM; 2.60A {Sulfolobus
solfataricus} PDB: 3id5_B* 3pla_E*
Length = 232
Score = 44.3 bits (104), Expect = 4e-05
Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 14/117 (11%)
Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
+ G KVL LG+ SG + ++ GK GVE P ++ L +++ ++
Sbjct: 72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVR-ELLLVAQRRPNI--- 127
Query: 189 GRVRIVEADAR--EGYLPEAP-YDVIYYGGCVSEVPSRVLNQ----LKKGGRILAPI 238
++ DAR + Y DV+Y + + LK G +L I
Sbjct: 128 --FPLLA-DARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVI 181
Score = 31.6 bits (71), Expect = 0.48
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEH 406
+ +G KVL +G+ SG + ++ ++ G G+E
Sbjct: 72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEF 109
Score = 31.6 bits (71), Expect = 0.48
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEH 480
+ +G KVL +G+ SG + ++ ++ G G+E
Sbjct: 72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEF 109
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 44.0 bits (104), Expect = 4e-05
Identities = 19/146 (13%), Positives = 41/146 (28%), Gaps = 25/146 (17%)
Query: 101 YQDVSASLGYAGVMNAPNQIADAAENLKLHLVD--GAKVLDLGSGSGYQTCVFAHMVGPT 158
Y + ++ D L +LD+GSG+G T H+
Sbjct: 9 YSSPTFD--AEALLGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWT---GHLASLG 63
Query: 159 GKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVS 218
++ G+E L+E + + V + + + +
Sbjct: 64 HQIEGLEPATRLVELARQT----------HPSVTFHHGTITDLSDSPKRWAGLLAWYSLI 113
Query: 219 EVP--------SRVLNQLKKGGRILA 236
+ + ++ GG +L
Sbjct: 114 HMGPGELPDALVALRMAVEDGGGLLM 139
Score = 33.2 bits (76), Expect = 0.12
Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 8/94 (8%)
Query: 336 TTRDKYGRLVHGSAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLV 395
Y + G + + +L++GSG+G +A L
Sbjct: 4 DVSKAYSSPTFDAEALLGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASL- 62
Query: 396 GPTGH-VTGL---EHMMDIAIESIANISTNHIDL 425
GH + GL ++++A ++ +++ +H +
Sbjct: 63 ---GHQIEGLEPATRLVELARQTHPSVTFHHGTI 93
Score = 33.2 bits (76), Expect = 0.13
Identities = 13/64 (20%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGH-VTGL---EHMMDIAIESIANISTN 495
+ +L++GSG+G +A L GH + GL ++++A ++ +++ +
Sbjct: 34 IEPWATGVDGVILDVGSGTGRWTGHLASL----GHQIEGLEPATRLVELARQTHPSVTFH 89
Query: 496 HIDL 499
H +
Sbjct: 90 HGTI 93
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 44.3 bits (105), Expect = 4e-05
Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 21/132 (15%)
Query: 114 MNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTG-KVIGVEHIPELIE 172
+ + + + G ++ D+G G+G T + A +V GV+ E++E
Sbjct: 14 LMQDVPYPEWVAWVLEQVEPGKRIADIGCGTGTATLLLAD-----HYEVTGVDLSEEMLE 68
Query: 173 ASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPS---------R 223
+ + N+ V D RE LPE + ++ + +
Sbjct: 69 IAQEKAMETNRH------VDFWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDS 122
Query: 224 VLNQLKKGGRIL 235
L GG++L
Sbjct: 123 AARLLTDGGKLL 134
Score = 32.4 bits (74), Expect = 0.26
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
Query: 370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGH-VTGL---EHMMDIAIE 413
+ G ++ +IG G+G L+A + VTG+ E M++IA E
Sbjct: 30 QVEPGKRIADIGCGTGTATLLLAD-----HYEVTGVDLSEEMLEIAQE 72
Score = 32.4 bits (74), Expect = 0.26
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
Query: 444 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGH-VTGL---EHMMDIAIE 487
+ G ++ +IG G+G L+A + VTG+ E M++IA E
Sbjct: 30 QVEPGKRIADIGCGTGTATLLLAD-----HYEVTGVDLSEEMLEIAQE 72
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 43.8 bits (103), Expect = 5e-05
Identities = 17/115 (14%), Positives = 40/115 (34%), Gaps = 8/115 (6%)
Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
L V+ KV+DLG G G + ++ GV+ ++E + + +
Sbjct: 24 VLKSVNAKKVIDLGCGEGNLLSLLLKD-KSFEQITGVDVSYSVLERAKDRLKIDRLPEMQ 82
Query: 188 SGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPS-------RVLNQLKKGGRIL 235
R+ + ++ + YD + + +VL + + ++
Sbjct: 83 RKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVI 137
Score = 36.9 bits (85), Expect = 0.009
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 368 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA 416
L KV+++G G G L +L+ +TG+ D++ +
Sbjct: 24 VLKSVNAKKVIDLGCGEGNLLSLLLKD-KSFEQITGV----DVSYSVLE 67
Score = 36.9 bits (85), Expect = 0.009
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 442 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA 490
L KV+++G G G L +L+ +TG+ D++ +
Sbjct: 24 VLKSVNAKKVIDLGCGEGNLLSLLLKD-KSFEQITGV----DVSYSVLE 67
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 43.3 bits (102), Expect = 5e-05
Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 24/125 (19%)
Query: 127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLL 186
L L D + V+D G+G T A G + KV + + + + + +S +
Sbjct: 16 LAEVLDDESIVVDATMGNGNDTAFLA---GLSKKVYAFDVQEQALGKTSQRLSDLGIE-- 70
Query: 187 DSGRVRIVEADARE----------------GYLPEAPYDVIYYGGCVSEVPSRVLNQLKK 230
++ GYLP A VI E ++L++L+
Sbjct: 71 ---NTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEV 127
Query: 231 GGRIL 235
GGR+
Sbjct: 128 GGRLA 132
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 43.6 bits (103), Expect = 6e-05
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 18/110 (16%)
Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG--RV 191
+VLD+G+G+G+ F+ V + IGV+ E++E + + G V
Sbjct: 22 EHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVE-------VASSFAQEKGVENV 71
Query: 192 RIVEADAREGYLPEAPYDVIY--YGGCVSEVPSRVLNQ----LKKGGRIL 235
R + A P+ +D+I Y + + + LK+ GR L
Sbjct: 72 RFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFL 121
Score = 41.7 bits (98), Expect = 2e-04
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDL 425
+VL+IG+G+G+ A + V G+ + M+++A ++
Sbjct: 17 AECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRF 73
Query: 426 I 426
Sbjct: 74 Q 74
Score = 41.7 bits (98), Expect = 2e-04
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDL 499
+VL+IG+G+G+ A + V G+ + M+++A ++
Sbjct: 17 AECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRF 73
Query: 500 I 500
Sbjct: 74 Q 74
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 43.3 bits (102), Expect = 8e-05
Identities = 29/179 (16%), Positives = 60/179 (33%), Gaps = 26/179 (14%)
Query: 127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLL 186
L+ +L + +VLDLG G+G + +V+ V+ E++E +
Sbjct: 48 LEEYLKNPCRVLDLGGGTGKWSLFLQERG---FEVVLVDPSKEMLEVAREK--------- 95
Query: 187 DSGRVRIVEADAREGYLPEAPYD-VIYYGGCVSEV--PSRVLNQ----LKKGGRILAPIG 239
G +VEA A + P ++ V+ G +S V + ++ L G ++A
Sbjct: 96 --GVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIA--- 150
Query: 240 PMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQMDPVDENLFTLMDK 298
T + + + + + + P D + +
Sbjct: 151 --TVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPEDLDSLEGFET 207
Score = 35.2 bits (81), Expect = 0.039
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIA 411
L +VL++G G+G + + V + + M+++A
Sbjct: 52 LKNPCRVLDLGGGTGKWSLFLQERG---FEVVLVDPSKEMLEVA 92
Score = 35.2 bits (81), Expect = 0.039
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 445 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIA 485
L +VL++G G+G + + V + + M+++A
Sbjct: 52 LKNPCRVLDLGGGTGKWSLFLQERG---FEVVLVDPSKEMLEVA 92
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 44.1 bits (103), Expect = 8e-05
Identities = 31/167 (18%), Positives = 51/167 (30%), Gaps = 17/167 (10%)
Query: 80 TERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLD 139
+ Q Y + Y+ S Y + +A + +K+ D +D
Sbjct: 125 LRHILQQVYNHSVTDPEKLNNYEPFS-PEVYGETS--FDLVAQMIDEIKMT--DDDLFVD 179
Query: 140 LGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDL----LDSGRVRIVE 195
LGSG G Q + GVE + + + K + +
Sbjct: 180 LGSGVG-QVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER 238
Query: 196 ADAREGYLPE--APYDVIY-----YGGCVSEVPSRVLNQLKKGGRIL 235
D E A VI+ +G V +K+GGRI+
Sbjct: 239 GDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIV 285
Score = 32.1 bits (72), Expect = 0.46
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 335 ITTRDKYGRLVHGSAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHL 394
+T +K S G +S +A ++D + +++GSG G + +A
Sbjct: 137 VTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEI--KMTDDDLFVDLGSGVGQVVLQVAAA 194
Query: 395 VGPTGHVTGLEHM 407
H G+E
Sbjct: 195 TN-CKHHYGVEKA 206
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics,
structural genomics consortium, SGC; HET: MTA; 1.82A
{Homo sapiens}
Length = 233
Score = 42.7 bits (100), Expect = 1e-04
Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 14/118 (11%)
Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
++H+ GAKVL LG+ SG + +VGP G V VE L N++K ++
Sbjct: 72 QIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGR-DLINLAKKRTNI-- 128
Query: 188 SGRVRIVEADAR--EGYLPEAP-YDVIYYGGCVSEVPSRVLNQ----LKKGGRILAPI 238
+ ++E DAR Y DVI+ + V L+ GG + I
Sbjct: 129 ---IPVIE-DARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISI 182
Score = 32.7 bits (74), Expect = 0.19
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEH 406
S+ + A + + +++ GAKVL +G+ SG + ++ +VGP G V +E
Sbjct: 60 SKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEF 110
Score = 32.3 bits (73), Expect = 0.23
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEH 480
+ +++ GAKVL +G+ SG + ++ +VGP G V +E
Sbjct: 70 VDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEF 110
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 43.0 bits (101), Expect = 1e-04
Identities = 24/135 (17%), Positives = 48/135 (35%), Gaps = 27/135 (20%)
Query: 110 YAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPE 169
Y+ +I +A NL L+L G+ + D+G+G+G + A+ V VE
Sbjct: 12 YSQTRVPDIRIVNAIINL-LNLPKGSVIADIGAGTGGYSVALANQG---LFVYAVEPSIV 67
Query: 170 LIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVP-------- 221
+ + ++ + +V A LP+ D + +
Sbjct: 68 MRQQAVVH-----------PQVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQE 116
Query: 222 -SRVLNQLKKGGRIL 235
R+ ++ G +L
Sbjct: 117 MQRI---IRDGTIVL 128
Score = 37.6 bits (87), Expect = 0.007
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDI 410
R + I++L LNL +G+ + +IG+G+G + L V +E M
Sbjct: 17 VPDIRIVNAIINL--LNLPKGSVIADIGAGTGGYS---VALANQGLFVYAVEPSIVMRQQ 71
Query: 411 A 411
A
Sbjct: 72 A 72
Score = 36.4 bits (84), Expect = 0.016
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 432 EIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIA 485
I+ I++L LNL +G+ + +IG+G+G + L V +E M A
Sbjct: 21 RIVNAIINL--LNLPKGSVIADIGAGTGGYS---VALANQGLFVYAVEPSIVMRQQA 72
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 42.6 bits (100), Expect = 1e-04
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 12/120 (10%)
Query: 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISK-GNKDLLDSGRV 191
GA++LD+GS Y M G I E + +++L+N+S+ G ++
Sbjct: 21 KGARLLDVGSDHAYLPIFLLQM-GYCDFAIAGEVVNGPYQSALKNVSEHGLTS-----KI 74
Query: 192 RIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVL----NQLKKGGR-ILAPIGPMDDFQK 246
+ A+ + D I G + + +L ++L+ +L P DD +K
Sbjct: 75 DVRLANGLSAFEEADNIDTITICGMGGRLIADILNNDIDKLQHVKTLVLQPNNREDDLRK 134
Score = 34.1 bits (78), Expect = 0.065
Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESI 415
S+R + + + +GA++L++GS YL + + G E + ++
Sbjct: 9 SKR-LQKVANYV----PKGARLLDVGSDHAYLPIFLLQM-GYCDFAIAGEVVNGPYQSAL 62
Query: 416 ANISTNH 422
N+S +
Sbjct: 63 KNVSEHG 69
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA
binding, structural genomics, BSGC structure funded by
NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB:
2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Length = 227
Score = 42.7 bits (100), Expect = 1e-04
Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 14/117 (11%)
Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
+ G VL LG SG + +VG GK+ G+E P ++ L I + +
Sbjct: 69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLR-ELVPIVEERR----- 122
Query: 189 GRVRIVEADAR--EGYLPEAP-YDVIYYGGCVSEVPSRVLNQ----LKKGGRILAPI 238
+ + DA E Y P DVI+ +++ LK+GG + +
Sbjct: 123 -NIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAV 178
Score = 32.3 bits (73), Expect = 0.28
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEH 406
+ G VL +G SG A+ ++ +VG G + G+E
Sbjct: 69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEF 106
Score = 32.3 bits (73), Expect = 0.28
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEH 480
+ G VL +G SG A+ ++ +VG G + G+E
Sbjct: 69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEF 106
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing,
snoRNP, structural genomics, BSGC structure funded by
NIH; 1.60A {Methanocaldococcus jannaschii} SCOP:
c.66.1.3 PDB: 1g8s_A
Length = 230
Score = 42.8 bits (100), Expect = 1e-04
Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 15/117 (12%)
Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
+ + +K+L LG+ +G T + G V +E+ P ++ L + ++
Sbjct: 70 MPIKRDSKILYLGASAGT-TPSHVADIADKGIVYAIEYAPRIMR-ELLDACAEREN---- 123
Query: 189 GRVRIVEADAR--EGYLPEAP-YDVIYYGGCVSEVPSRVLNQ----LKKGGRILAPI 238
+ + DA + Y DVIY ++ LKKGG + I
Sbjct: 124 --IIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAI 178
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 42.5 bits (100), Expect = 1e-04
Identities = 22/122 (18%), Positives = 36/122 (29%), Gaps = 31/122 (25%)
Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
+ VL+ G G+G T V G+E E+ + +
Sbjct: 40 DVVNKSFGNVLEFGVGTGNLTNKLLLAG---RTVYGIEPSREMRMIAKEKL--------- 87
Query: 188 SGRVRIVEADAREGYLPEAPYDVIYYGGCVS---------EVPSRVLNQ----LKKGGRI 234
I E D + D I VS + + + + L KGG+I
Sbjct: 88 PKEFSITEGDFLS-FEVPTSIDTI-----VSTYAFHHLTDDEKNVAIAKYSQLLNKGGKI 141
Query: 235 LA 236
+
Sbjct: 142 VF 143
Score = 39.1 bits (91), Expect = 0.002
Identities = 17/76 (22%), Positives = 22/76 (28%), Gaps = 9/76 (11%)
Query: 339 DKYGRLVHGSAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPT 398
Y V G IL+ + VLE G G+G L +
Sbjct: 14 HTYDSFVQGEDIQYKEVFAH-YEDILED--VVNKSFGNVLEFGVGTGNLTNKLLLAG--- 67
Query: 399 GHVTGL---EHMMDIA 411
V G+ M IA
Sbjct: 68 RTVYGIEPSREMRMIA 83
Score = 38.3 bits (89), Expect = 0.003
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 6/49 (12%)
Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIA 485
L + VLE G G+G L + V G+ M IA
Sbjct: 38 LEDVVNKSFGNVLEFGVGTGNLTNKLLLAG---RTVYGIEPSREMRMIA 83
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 42.5 bits (100), Expect = 1e-04
Identities = 26/142 (18%), Positives = 47/142 (33%), Gaps = 34/142 (23%)
Query: 114 MNAPNQIADAAE-NLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIE 172
++ A +E L+ + +++G G+G P IGVE + E
Sbjct: 27 WFLVHRFAYLSELQAVKCLLPEGRGVEIGVGTG-------RFAVPLKIKIGVEPSERMAE 79
Query: 173 -ASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVP---------S 222
A R + +++ A L + +D + V
Sbjct: 80 IARKRGV-------------FVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAY 126
Query: 223 RVLNQLKKGGRILAPIGPMDDF 244
R+ LKKGG ++ I + F
Sbjct: 127 RI---LKKGGYLIVGIVDRESF 145
Score = 33.6 bits (77), Expect = 0.10
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 10/46 (21%)
Query: 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIA 411
L + +EIG G+G A + G+E M +IA
Sbjct: 43 KCLLPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIA 81
Score = 33.6 bits (77), Expect = 0.10
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 10/46 (21%)
Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIA 485
L + +EIG G+G A + G+E M +IA
Sbjct: 43 KCLLPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIA 81
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 42.5 bits (100), Expect = 1e-04
Identities = 28/196 (14%), Positives = 62/196 (31%), Gaps = 27/196 (13%)
Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTG-KVIGVEHIPELIEASLRNISKGNKDLL 186
+ + +VLDL G+G T A G +V+G++ E++ + R + N
Sbjct: 36 EDAKREVRRVLDLACGTGIPTLELAER----GYEVVGLDLHEEMLRVARRKAKERNLK-- 89
Query: 187 DSGRVRIVEADAREGYLPEAPYDVIYYGGC---------VSEVPSRVLNQLKKGGRILAP 237
+ ++ D E +D + + ++ S+V LK GG +
Sbjct: 90 ----IEFLQGDVLEIAFKN-EFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144
Query: 238 IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQMDPVDENLFTLMD 297
+ + +K + + + L+ + P E
Sbjct: 145 FPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQKLRFKRLVQILRPNGE------V 198
Query: 298 KDSDELFSERVWELKQ 313
K ++ ++
Sbjct: 199 KAFLVDDELNIYTPRE 214
Score = 32.9 bits (75), Expect = 0.17
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 9/68 (13%)
Query: 351 DNGPSSERSIAHILDLC-YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGH-VTGL---E 405
+ I + ++ +VL++ G+G +A G+ V GL E
Sbjct: 18 RRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER----GYEVVGLDLHE 73
Query: 406 HMMDIAIE 413
M+ +A
Sbjct: 74 EMLRVARR 81
Score = 32.5 bits (74), Expect = 0.29
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 8/52 (15%)
Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGH-VTGL---EHMMDIAIE 487
+VL++ G+G +A G+ V GL E M+ +A
Sbjct: 34 FKEDAKREVRRVLDLACGTGIPTLELAER----GYEVVGLDLHEEMLRVARR 81
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH;
1.37A {Mesembryanthemum crystallinum}
Length = 237
Score = 41.9 bits (99), Expect = 2e-04
Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 30/119 (25%)
Query: 136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE 195
K +++G +GY + A + GK+ ++ E E L I K + ++ +E
Sbjct: 73 KTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVE----HKINFIE 128
Query: 196 ADARE-------GYLPEAPYDVI-----------YYGGCVSEVPSRVLNQLKKGGRILA 236
+DA G E YD Y+ R++ +K GG +
Sbjct: 129 SDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYH--------ERLMKLVKVGGIVAY 179
Score = 41.5 bits (98), Expect = 3e-04
Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 5/101 (4%)
Query: 343 RLVHGSAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVT 402
R + S PD+ S+ ++ L L K +E+G +GY L A + G +T
Sbjct: 41 REANESHPDSYMSTSPLAGQLMSFV-LKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKIT 99
Query: 403 GLE---HMMDIAIESIANISTNH-IDLIANETIEIIPHILD 439
++ +I + I H I+ I ++ + + ++L
Sbjct: 100 AIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQ 140
Score = 39.2 bits (92), Expect = 0.002
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIANISTNH-ID 498
L L K +E+G +GY L A + G +T ++ +I + I H I+
Sbjct: 66 LKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKIN 125
Query: 499 LIANETIEIIREF 511
I ++ + +
Sbjct: 126 FIESDAMLALDNL 138
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase,
transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Length = 232
Score = 41.8 bits (99), Expect = 2e-04
Identities = 22/114 (19%), Positives = 47/114 (41%), Gaps = 26/114 (22%)
Query: 136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE 195
+L++G+ GY + FA + V +E +I+ + +N++ + + +VRI+E
Sbjct: 74 NILEIGTAIGYSSMQFASI-SDDIHVTTIERNETMIQYAKQNLATYHFE----NQVRIIE 128
Query: 196 ADARE--GYLPEAPYDVI-----------YYGGCVSEVPSRVLNQLKKGGRILA 236
+A E + + YD+I ++ LK G ++
Sbjct: 129 GNALEQFENVNDKVYDMIFIDAAKAQSKKFF--------EIYTPLLKHQGLVIT 174
Score = 38.8 bits (91), Expect = 0.002
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 376 KVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESI--ANISTNHIDLIANET 430
+LEIG+ GY + A + HVT +E M+ A +++ + N + +I
Sbjct: 74 NILEIGTAIGYSSMQFASI-SDDIHVTTIERNETMIQYAKQNLATYHFE-NQVRIIEGNA 131
Query: 431 IEIIPHILD 439
+E ++ D
Sbjct: 132 LEQFENVND 140
Score = 37.6 bits (88), Expect = 0.005
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 450 KVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESI--ANISTNHIDLI---A 501
+LEIG+ GY + A + HVT +E M+ A +++ + N + +I A
Sbjct: 74 NILEIGTAIGYSSMQFASI-SDDIHVTTIERNETMIQYAKQNLATYHFE-NQVRIIEGNA 131
Query: 502 NETIEIIRE 510
E E + +
Sbjct: 132 LEQFENVND 140
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium; 1.88A {Klebsiella pneumoniae subsp}
Length = 248
Score = 41.9 bits (99), Expect = 2e-04
Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 26/115 (22%)
Query: 136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE 195
++L++G+ GY T A + G+++ +E + + N+ D RV + E
Sbjct: 66 RILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVD----QRVTLRE 121
Query: 196 ADARE---GYLPEAPYDVI-----------YYGGCVSEVPSRVLNQLKKGGRILA 236
A + +D+I Y L + G I+
Sbjct: 122 GPALQSLESLGECPAFDLIFIDADKPNNPHYL--------RWALRYSRPGTLIIG 168
Score = 37.3 bits (87), Expect = 0.007
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 376 KVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESI--ANISTNHIDLIANET 430
++LEIG+ GY MA + G + LE H +A E++ A + + L
Sbjct: 66 RILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVD-QRVTLREGPA 124
Query: 431 IEIIPHILD 439
++ + + +
Sbjct: 125 LQSLESLGE 133
Score = 37.3 bits (87), Expect = 0.007
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 450 KVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESI--ANISTNHIDLI---A 501
++LEIG+ GY MA + G + LE H +A E++ A + + L A
Sbjct: 66 RILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVD-QRVTLREGPA 124
Query: 502 NETIEIIRE 510
+++E + E
Sbjct: 125 LQSLESLGE 133
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta
with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB:
3dul_A*
Length = 223
Score = 41.4 bits (98), Expect = 2e-04
Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 30/118 (25%)
Query: 136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE 195
+L++G+ GY T A + G+V+ +E + + + NI + N + RV +
Sbjct: 61 NILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLN----DRVEVRT 116
Query: 196 ADAREGYLPE------APYDVI-----------YYGGCVSEVPSRVLNQLKKGGRILA 236
A + L + P+D I Y+ L + G I+
Sbjct: 117 GLALD-SLQQIENEKYEPFDFIFIDADKQNNPAYF--------EWALKLSRPGTVIIG 165
Score = 38.4 bits (90), Expect = 0.003
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 376 KVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESI--ANISTNHIDLIANET 430
+LEIG+ GY +A + G V LE DIA +I AN++ + +++
Sbjct: 61 NILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLN-DRVEVRTGLA 119
Query: 431 IEIIPHILD 439
++ + I +
Sbjct: 120 LDSLQQIEN 128
Score = 36.4 bits (85), Expect = 0.013
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 450 KVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESI--ANISTNHIDLI---A 501
+LEIG+ GY +A + G V LE DIA +I AN++ + +++ A
Sbjct: 61 NILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLN-DRVEVRTGLA 119
Query: 502 NETIEIIRE 510
++++ I
Sbjct: 120 LDSLQQIEN 128
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 41.3 bits (97), Expect = 3e-04
Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 27/136 (19%)
Query: 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIA---IESIANISTNH 422
L+ + LEIG +G +A +T + + A + ++IS
Sbjct: 47 LSSGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWSHISWAA 103
Query: 423 IDL------------IANETIEIIPHILDLCYLN--LHRGAKVLEIGSGSGYLATLMAHL 468
D+ + E + ++ D+ + + K+L G G +
Sbjct: 104 TDILQFSTAELFDLIVVAEVLY---YLEDMTQMRTAIDNMVKMLAPG-GHLVFGSARDAT 159
Query: 469 VGPTGHVTGLEHMMDI 484
GHV G E ++ I
Sbjct: 160 CRRWGHVAGAETVITI 175
Score = 37.9 bits (88), Expect = 0.004
Identities = 16/116 (13%), Positives = 35/116 (30%), Gaps = 28/116 (24%)
Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI 193
+ L++G +G T + ++ I+ R I + + +
Sbjct: 52 VSNGLEIGCAAGAFT---EKLAPHCKRLTV-------IDVMPRAIGRACQRTKRWSHISW 101
Query: 194 VEADAREGYLPEAPYDVIYYGGCVSEV----PS---------RVLNQLKKGGRILA 236
D + +D+I V+EV ++ L GG ++
Sbjct: 102 AATDI-LQFSTAELFDLI----VVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVF 152
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 42.5 bits (99), Expect = 3e-04
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 1/84 (1%)
Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIE-ASLRNISKGNKDLLD 187
+ + ++D G GSG +IGV+ P+ + A+ K NK+ +
Sbjct: 717 IRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACN 776
Query: 188 SGRVRIVEADAREGYLPEAPYDVI 211
+ + E D+
Sbjct: 777 VKSATLYDGSILEFDSRLHDVDIG 800
Score = 38.3 bits (88), Expect = 0.007
Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 368 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA 416
++ + +++ G GSG L + + G+ DI+ + +A
Sbjct: 716 HIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGV----DISPKGLA 760
Score = 38.3 bits (88), Expect = 0.007
Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 442 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA 490
++ + +++ G GSG L + + G+ DI+ + +A
Sbjct: 716 HIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGV----DISPKGLA 760
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 41.8 bits (98), Expect = 3e-04
Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 16/116 (13%)
Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
L + VLDLG G G+ A KV+G++ ++ + R S
Sbjct: 40 LPDFNQKTVLDLGCGFGWHCIYAAEH--GAKKVLGIDLSERMLTEAKRK--------TTS 89
Query: 189 GRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPS--RVLNQ----LKKGGRILAPI 238
V + + + Y+V+ + + S + + LK G + +
Sbjct: 90 PVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSV 145
Score = 34.5 bits (79), Expect = 0.052
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 10/82 (12%)
Query: 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIE--SIANISTNHI 423
L VL++G G G+ A V G+ E M+ A + +
Sbjct: 40 LPDFNQKTVLDLGCGFGWHCIYAAEH--GAKKVLGIDLSERMLTEAKRKTTSPVVCYEQK 97
Query: 424 DLIANETIEIIPHILDLCYLNL 445
+ E I I P ++ +L
Sbjct: 98 AI---EDIAIEPDAYNVVLSSL 116
Score = 34.1 bits (78), Expect = 0.085
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 7/54 (12%)
Query: 435 PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIA 485
+ + L VL++G G G+ A V G+ E M+ A
Sbjct: 34 HELKKM--LPDFNQKTVLDLGCGFGWHCIYAAEH--GAKKVLGIDLSERMLTEA 83
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 41.1 bits (97), Expect = 3e-04
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 9/88 (10%)
Query: 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK 183
EN+ + +LDLG G G A + I+ + NI N
Sbjct: 45 VENVVVDK--DDDILDLGCGYGVIGIALAD---EVKSTTMADINRRAIKLAKENIKLNN- 98
Query: 184 DLLDSGRVRIVEADAREGYLPEAPYDVI 211
LD+ +R+V +D E + + Y+ I
Sbjct: 99 --LDNYDIRVVHSDLYEN-VKDRKYNKI 123
Score = 32.3 bits (74), Expect = 0.26
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 14/73 (19%)
Query: 368 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDI---AIESI-ANISTNHI 423
+ + + +L++G G G + +A V T M DI AI+ NI N++
Sbjct: 47 NVVVDKDDDILDLGCGYGVIGIALADEV---KSTT----MADINRRAIKLAKENIKLNNL 99
Query: 424 DLIANETIEIIPH 436
D N I ++
Sbjct: 100 D---NYDIRVVHS 109
Score = 31.9 bits (73), Expect = 0.34
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 14/71 (19%)
Query: 442 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDI---AIESI-ANISTNHI 497
+ + + +L++G G G + +A V T M DI AI+ NI N++
Sbjct: 47 NVVVDKDDDILDLGCGYGVIGIALADEV---KSTT----MADINRRAIKLAKENIKLNNL 99
Query: 498 DLIANETIEII 508
D N I ++
Sbjct: 100 D---NYDIRVV 107
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 40.9 bits (96), Expect = 3e-04
Identities = 25/129 (19%), Positives = 40/129 (31%), Gaps = 24/129 (18%)
Query: 116 APNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTG-KVIGVEHIPELIEAS 174
+++ +A + +K K LDLG G+G + A G V + I
Sbjct: 20 THSEVLEAVKVVK-----PGKTLDLGCGNGRNSLYLAAN----GYDVDAWDKNAMSIANV 70
Query: 175 LRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGC--------VSEVPSRVLN 226
R S N D + D + YD I + + + +
Sbjct: 71 ERIKSIENLD-----NLHTRVVDLNN-LTFDRQYDFILSTVVLMFLEAKTIPGLIANMQR 124
Query: 227 QLKKGGRIL 235
K GG L
Sbjct: 125 CTKPGGYNL 133
Score = 30.1 bits (68), Expect = 1.1
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 13/74 (17%)
Query: 435 PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGH-VTGL---EHMMDIAIESIA 490
H L + + + K L++G G+G + +A G+ V + +
Sbjct: 20 THSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN----GYDVDAWDKNAMSIANVERIKS 75
Query: 491 -----NISTNHIDL 499
N+ T +DL
Sbjct: 76 IENLDNLHTRVVDL 89
Score = 29.8 bits (67), Expect = 1.5
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 13/69 (18%)
Query: 366 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGH-VTGL---EHMMDIAIESIA----- 416
L + + + K L++G G+G + +A G+ V + +
Sbjct: 25 LEAVKVVKPGKTLDLGCGNGRNSLYLAAN----GYDVDAWDKNAMSIANVERIKSIENLD 80
Query: 417 NISTNHIDL 425
N+ T +DL
Sbjct: 81 NLHTRVVDL 89
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 41.4 bits (97), Expect = 3e-04
Identities = 27/115 (23%), Positives = 40/115 (34%), Gaps = 23/115 (20%)
Query: 130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG 189
L GAK+L+LG G+GYQ G V + PEL + R +
Sbjct: 40 ELPAGAKILELGCGAGYQAEAMLAA-GF--DVDATDGSPELAAEASRRL----------- 85
Query: 190 RVRIVEADAREGYLPEAPYDVIYYGGCVSEVP--------SRVLNQLKKGGRILA 236
+ + + YD ++ C+ VP + LK GG A
Sbjct: 86 GRPVRTMLFHQLDAID-AYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYA 139
Score = 35.6 bits (82), Expect = 0.024
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 8/45 (17%)
Query: 371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGH-VTGL---EHMMDIA 411
L GAK+LE+G G+GY A M G V + A
Sbjct: 41 LPAGAKILELGCGAGYQAEAMLAA----GFDVDATDGSPELAAEA 81
Score = 35.6 bits (82), Expect = 0.024
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 8/45 (17%)
Query: 445 LHRGAKVLEIGSGSGYLATLMAHLVGPTGH-VTGL---EHMMDIA 485
L GAK+LE+G G+GY A M G V + A
Sbjct: 41 LPAGAKILELGCGAGYQAEAMLAA----GFDVDATDGSPELAAEA 81
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 41.7 bits (98), Expect = 3e-04
Identities = 13/75 (17%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
Query: 355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIA 411
+ +A ++ + L +VL++ +G G++A A V V E ++ +A
Sbjct: 21 AKGSDLAKLMQI--AALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVA 75
Query: 412 IESIANISTNHIDLI 426
I ++ +
Sbjct: 76 RAFIEGNGHQQVEYV 90
Score = 41.3 bits (97), Expect = 4e-04
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDL 499
L +VL++ +G G++A A V V E ++ +A I ++
Sbjct: 33 AALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQQVEY 89
Query: 500 I 500
+
Sbjct: 90 V 90
Score = 39.8 bits (93), Expect = 0.001
Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 26/119 (21%)
Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
L +VLD+ +G G+ FA V KV+ + ++++ + +
Sbjct: 33 AALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILK-------VARAFIEGN 82
Query: 189 G--RVRIVEADAREGYLPEAPYDVIY----------YGGCVSEVPSRVLNQLKKGGRIL 235
G +V V+ DA + + + ++ VSE RV LKKGG++L
Sbjct: 83 GHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEA-YRV---LKKGGQLL 137
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure
initiative, NEW research center for structural genomics,
nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Length = 233
Score = 41.5 bits (98), Expect = 3e-04
Identities = 24/162 (14%), Positives = 53/162 (32%), Gaps = 45/162 (27%)
Query: 136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE 195
++L++G+ GY A + P ++ +E E + +++ + R+ ++
Sbjct: 57 RILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKALGLE----SRIELLF 111
Query: 196 ADARE---GYLPEAPYDVI-----------YYGGCVSEVPSRVLNQLKKGGRILAPIGPM 241
DA + +DV+ ++ ++ GG IL+
Sbjct: 112 GDALQLGEKLELYPLFDVLFIDAAKGQYRRFF--------DMYSPMVRPGGLILS----- 158
Query: 242 DDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKF 283
DN L + + E + K L I +
Sbjct: 159 -------------DNVLFRGLVAETDIEHKRHKQLATKIDTY 187
Score = 35.7 bits (83), Expect = 0.023
Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 376 KVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESI--ANISTNHIDLIANET 430
++LEIG+ GY A MA P + +E + A + + + + I+L+ +
Sbjct: 57 RILEIGTAIGYSAIRMA-QALPEATIVSIERDERRYEEAHKHVKALGLE-SRIELLFGDA 114
Query: 431 IEIIPHI 437
+++ +
Sbjct: 115 LQLGEKL 121
Score = 35.7 bits (83), Expect = 0.024
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Query: 450 KVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESI--ANISTNHIDLI---A 501
++LEIG+ GY A MA P + +E + A + + + + I+L+ A
Sbjct: 57 RILEIGTAIGYSAIRMA-QALPEATIVSIERDERRYEEAHKHVKALGLE-SRIELLFGDA 114
Query: 502 NETIE 506
+ E
Sbjct: 115 LQLGE 119
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A
{Synechocystis SP}
Length = 232
Score = 41.1 bits (97), Expect = 4e-04
Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 29/118 (24%)
Query: 136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE 195
+VL++G GY A + P G++I + P + + K ++ +
Sbjct: 75 QVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVA----EKISLRL 130
Query: 196 ADARE------GYLPEAPYDVI-----------YYGGCVSEVPSRVLNQLKKGGRILA 236
A P +D+I YY LN L++GG ++
Sbjct: 131 GPALATLEQLTQGKPLPEFDLIFIDADKRNYPRYY--------EIGLNLLRRGGLMVI 180
Score = 39.6 bits (93), Expect = 0.001
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 376 KVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESI--ANISTNHIDLIANET 430
+VLEIG GY A MA + P G + + + IA + A ++ I L
Sbjct: 75 QVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVA-EKISLRLGPA 133
Query: 431 IEIIPHILD 439
+ + +
Sbjct: 134 LATLEQLTQ 142
Score = 37.3 bits (87), Expect = 0.007
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 450 KVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESI--ANISTNHIDLIANET 504
+VLEIG GY A MA + P G + + + IA + A ++ I L
Sbjct: 75 QVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVA-EKISLRLGPA 133
Query: 505 IEIIREF 511
+ + +
Sbjct: 134 LATLEQL 140
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 41.4 bits (97), Expect = 4e-04
Identities = 28/208 (13%), Positives = 64/208 (30%), Gaps = 35/208 (16%)
Query: 118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTG-KVIGVEHIPELIEASLR 176
+ AD A ++ H A +LD+ G+G A V G+E +++ + R
Sbjct: 35 REAADLAALVRRHSPKAASLLDVACGTGMHLRHLADS----FGTVEGLELSADMLAIARR 90
Query: 177 NISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIY-YGGCVSEVPS---------RVLN 226
+ D R+ L + + + + R
Sbjct: 91 RNP----------DAVLHHGDMRDFSLGR-RFSAVTCMFSSIGHLAGQAELDAALERFAA 139
Query: 227 QLKKGGR-ILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQM 285
+ G ++ P ++F + T + V++ + +A ++++H
Sbjct: 140 HVLPDGVVVVEPWWFPENFTPGYVAAGTVEAG--GTTVTRVSHSSREGEATRIEVHYLVA 197
Query: 286 DPVDENLFTLMDKDSDELFSERVWELKQ 313
P +E ++ +Q
Sbjct: 198 GPDRG------ITHHEESHRITLFTREQ 219
Score = 36.0 bits (83), Expect = 0.022
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 8/80 (10%)
Query: 350 PDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGH-VTGL---E 405
G R A + L + + A +L++ G+G +A V GL
Sbjct: 27 QGKGKDYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADS----FGTVEGLELSA 82
Query: 406 HMMDIAIESIANISTNHIDL 425
M+ IA + +H D+
Sbjct: 83 DMLAIARRRNPDAVLHHGDM 102
Score = 33.7 bits (77), Expect = 0.10
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 437 ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGH-VTGL---EHMMDIAIESIANI 492
+ L + + A +L++ G+G +A V GL M+ IA +
Sbjct: 40 LAALVRRHSPKAASLLDVACGTGMHLRHLADS----FGTVEGLELSADMLAIARRRNPDA 95
Query: 493 STNHIDL 499
+H D+
Sbjct: 96 VLHHGDM 102
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 40.9 bits (96), Expect = 4e-04
Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 23/134 (17%)
Query: 112 GVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELI 171
G + + Q+ D A L + +VLDLG G G+ A + +GV+ L+
Sbjct: 31 GAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRG---IEAVGVDGDRTLV 87
Query: 172 EASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEV-----PSRVLN 226
+A+ + A YD+I C + +L+
Sbjct: 88 DAARAA-------GAGEVHLASYAQLAEAKVPVGKDYDLI----CANFALLHQDIIELLS 136
Query: 227 Q----LKKGGRILA 236
L GG ++
Sbjct: 137 AMRTLLVPGGALVI 150
Score = 35.9 bits (83), Expect = 0.016
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 351 DNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHM 407
S R + L + + +VL++G G G+L +A G+ +
Sbjct: 30 HGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRG---IEAVGVDGDRTL 86
Query: 408 MDIA 411
+D A
Sbjct: 87 VDAA 90
Score = 34.8 bits (80), Expect = 0.038
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 8/54 (14%)
Query: 435 PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIA 485
IL + + +VL++G G G+L +A G+ ++D A
Sbjct: 42 QAILLA--ILGRQPERVLDLGCGEGWLLRALADRG---IEAVGVDGDRTLVDAA 90
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 41.0 bits (96), Expect = 4e-04
Identities = 17/120 (14%), Positives = 39/120 (32%), Gaps = 12/120 (10%)
Query: 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISK-GNKDLLDSGRV 191
++ D+GS Y C FA I E + +++ + + G + ++
Sbjct: 21 KNERIADIGSDHAYLPC-FAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTE-----QI 74
Query: 192 RIVEADAREGYLPEAPYDVIYYGG----CVSEVPSRVLNQLKKGGR-ILAPIGPMDDFQK 246
+ + + + D I G + + +L + IL P ++
Sbjct: 75 DVRKGNGLAVIEKKDAIDTIVIAGMGGTLIRTILEEGAAKLAGVTKLILQPNIAAWQLRE 134
Score = 32.5 bits (74), Expect = 0.23
Identities = 12/99 (12%), Positives = 28/99 (28%), Gaps = 13/99 (13%)
Query: 373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIE 432
+ ++ +IGS YL ++ + + ++ E
Sbjct: 21 KNERIADIGSDHAYLPCFAVKN-QTASFA----IAGEVVDGPFQSAQKQ---VRSSGLTE 72
Query: 433 IIPHILD--LCYLNLHRGAKVLEIGSGSGYLATLMAHLV 469
I L + + I +G TL+ ++
Sbjct: 73 QIDVRKGNGLAVIEKKDAIDTIVI---AGMGGTLIRTIL 108
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Length = 354
Score = 41.3 bits (97), Expect = 5e-04
Identities = 26/115 (22%), Positives = 38/115 (33%), Gaps = 19/115 (16%)
Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI 193
G +VLD +GSG A +GPT V + + + + +R
Sbjct: 204 GMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-----WIRF 258
Query: 194 VEADAREGYLPEAPYDVIY----YG---GCVSEVPS-------RVLNQLKKGGRI 234
+ ADAR D I +G G + L L GGR+
Sbjct: 259 LRADARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRV 313
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase,
PSI, protei structure initiative; HET: MSE; 2.05A
{Escherichia coli} SCOP: c.66.1.46
Length = 202
Score = 40.6 bits (96), Expect = 5e-04
Identities = 21/124 (16%), Positives = 41/124 (33%), Gaps = 38/124 (30%)
Query: 130 HLVDGAKVLDL--GSGS--------GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNIS 179
++ A+ LD GSG+ +E + L
Sbjct: 51 PVIVDAQCLDCFAGSGALGLEALSRYAAGATL------------IEMDRAVS-QQLIK-- 95
Query: 180 KGNKDLLDSGRVRIVEADAREGYL--PEAPYDVIY----YGGCVSEVPSRVLNQLKKGGR 233
N L +G R+V ++A +L P+++++ + + +N L+ G
Sbjct: 96 --NLATLKAGNARVVNSNAMS-FLAQKGTPHNIVFVDPPFR---RGLLEETINLLEDNG- 148
Query: 234 ILAP 237
LA
Sbjct: 149 WLAD 152
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella
burnetii}
Length = 225
Score = 40.7 bits (96), Expect = 5e-04
Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 29/118 (24%)
Query: 136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE 195
KV+D+G+ +GY + G +I + + + K ++ +
Sbjct: 67 KVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLS----DKIGLRL 122
Query: 196 ADARE------GYLPEAPYDVI-----------YYGGCVSEVPSRVLNQLKKGGRILA 236
+ A++ YD+I YY L L++GG I
Sbjct: 123 SPAKDTLAELIHAGQAWQYDLIYIDADKANTDLYY--------EESLKLLREGGLIAV 172
Score = 39.9 bits (94), Expect = 9e-04
Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 376 KVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESI--ANISTNHIDLIANET 430
KV++IG+ +GY A M + G + + +A E A +S + I L +
Sbjct: 67 KVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLS-DKIGLRLSPA 125
Query: 431 IEIIPHILD 439
+ + ++
Sbjct: 126 KDTLAELIH 134
Score = 37.6 bits (88), Expect = 0.004
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 450 KVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESI--ANISTNHIDLIANET 504
KV++IG+ +GY A M + G + + +A E A +S + I L +
Sbjct: 67 KVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLS-DKIGLRLSPA 125
Query: 505 IEIIREF 511
+ + E
Sbjct: 126 KDTLAEL 132
>2avd_A Catechol-O-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens}
SCOP: c.66.1.1
Length = 229
Score = 40.8 bits (96), Expect = 5e-04
Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 29/118 (24%)
Query: 136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE 195
K LDLG+ +GY A + G+V+ E + E + + ++ +
Sbjct: 72 KALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE----HKIDLRL 127
Query: 196 ADARE------GYLPEAPYDVI-----------YYGGCVSEVPSRVLNQLKKGGRILA 236
A E +DV YY R L L+ GG +
Sbjct: 128 KPALETLDELLAAGEAGTFDVAVVDADKENCSAYY--------ERCLQLLRPGGILAV 177
Score = 38.5 bits (90), Expect = 0.003
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 376 KVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIANISTNH-IDLIANETI 431
K L++G+ +GY A +A + G V E ++ H IDL +
Sbjct: 72 KALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPAL 131
Query: 432 EIIPHILD 439
E + +L
Sbjct: 132 ETLDELLA 139
Score = 36.2 bits (84), Expect = 0.014
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 450 KVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIANISTNH-IDLIANETI 505
K L++G+ +GY A +A + G V E ++ H IDL +
Sbjct: 72 KALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPAL 131
Query: 506 EIIREF 511
E + E
Sbjct: 132 ETLDEL 137
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 40.8 bits (95), Expect = 6e-04
Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 16/130 (12%)
Query: 115 NAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEAS 174
N + +L ++D G+G QT + +VIG++ +E +
Sbjct: 38 NVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFF---PRVIGLDVSKSALEIA 94
Query: 175 LRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCV-----SEVPSRVLNQ-- 227
+ + N R+ + + D Y E +
Sbjct: 95 AKENTAANISY----RLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLR 150
Query: 228 --LKKGGRIL 235
L K G +
Sbjct: 151 ILLGKQGAMY 160
Score = 38.5 bits (89), Expect = 0.003
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIA 411
ER++ L L + +++ G+G ++ V GL + ++IA
Sbjct: 39 VERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFF---PRVIGLDVSKSALEIA 94
Score = 35.0 bits (80), Expect = 0.035
Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 6/51 (11%)
Query: 438 LDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIA 485
L L + +++ G+G ++ V GL + ++IA
Sbjct: 47 LPRFELLFNPELPLIDFACGNGTQTKFLSQFF---PRVIGLDVSKSALEIA 94
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 40.4 bits (94), Expect = 6e-04
Identities = 16/120 (13%), Positives = 35/120 (29%), Gaps = 16/120 (13%)
Query: 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK 183
+ + + L G G G+ A P V+G++ + +
Sbjct: 57 VHLVDTSSLPLGRALVPGCGGGHDVVAMA---SPERFVVGLDISESALAKANET----YG 109
Query: 184 DLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVP--------SRVLNQLKKGGRIL 235
+ V+ D + P +D+I+ + + LK G ++
Sbjct: 110 SSPKAEYFSFVKEDVFT-WRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELI 168
Score = 27.3 bits (60), Expect = 9.8
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 435 PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGH-VTGLEHMMDIAIE 487
P I+ L + + L G G G+ MA V GL+ + + A+
Sbjct: 54 PLIVHLVDTSSLPLGRALVPGCGGGHDVVAMASP----ERFVVGLD-ISESALA 102
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification;
HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A*
3b3g_A 2v74_B* 2v7e_A
Length = 348
Score = 41.1 bits (96), Expect = 6e-04
Identities = 37/178 (20%), Positives = 57/178 (32%), Gaps = 24/178 (13%)
Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
VLD+G GSG FA G K+ VE A + K N +
Sbjct: 46 HTDFKDKIVLDVGCGSGI-LSFFAAQAGAR-KIYAVEASTMAQHA--EVLVKSNN---LT 98
Query: 189 GRVRIVEADAREGYLPEAPYDVI--------YYGGCVSEVPSRVLNQLKKGGRILAP--- 237
R+ ++ E LPE D+I + + E LK G + P
Sbjct: 99 DRIVVIPGKVEEVSLPE-QVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMF-PTIG 156
Query: 238 ---IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQMDPVDENL 292
+ P D ++L N + V A+ A+ + +D D +
Sbjct: 157 DVHLAPFTD-EQLYMEQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRI 213
Score = 28.1 bits (62), Expect = 8.0
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 447 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIE 506
+ VL++G GSG L+ A G + +E +A + + +N++ + I
Sbjct: 50 KDKIVLDVGCGSGILS-FFAAQAGAR-KIYAVE-ASTMAQHAEVLVKSNNLT----DRIV 102
Query: 507 IIR 509
+I
Sbjct: 103 VIP 105
Score = 27.7 bits (61), Expect = 9.1
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIE 432
+ VL++G GSG L+ A G + +E +A + + +N++ + I
Sbjct: 50 KDKIVLDVGCGSGILS-FFAAQAGAR-KIYAVE-ASTMAQHAEVLVKSNNLT----DRIV 102
Query: 433 IIP 435
+IP
Sbjct: 103 VIP 105
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, regulator,
mRNA processing; 2.55A {Rattus norvegicus}
Length = 480
Score = 41.3 bits (96), Expect = 7e-04
Identities = 39/183 (21%), Positives = 59/183 (32%), Gaps = 34/183 (18%)
Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
VLD+G GSG FA G K+ VE A + K N +
Sbjct: 154 HTDFKDKIVLDVGCGSGI-LSFFAAQAGAR-KIYAVEASTMAQHA--EVLVKSNN---LT 206
Query: 189 GRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVL-------------NQLKKGGRIL 235
R+ ++ E LPE D+I +SE +L LK G +
Sbjct: 207 DRIVVIPGKVEEVSLPE-QVDII-----ISEPMGYMLFNERMLESYLHAKKYLKPSGNMF 260
Query: 236 AP------IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQMDPVD 289
P + P D ++L N + V A+ A+ + +D D
Sbjct: 261 -PTIGDVHLAPFTD-EQLYMEQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFD 318
Query: 290 ENL 292
+
Sbjct: 319 IRI 321
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold,
protein-cofactor-substrate complex; HET: SAH FRE; 2.70A
{Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Length = 247
Score = 40.4 bits (95), Expect = 8e-04
Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 376 KVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIANISTNH-IDLIANETI 431
+EIG +GY A + G + ++ ++ + I +H ID +
Sbjct: 82 NTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPAL 141
Query: 432 EIIPHILD 439
++ ++
Sbjct: 142 PVLDEMIK 149
Score = 40.0 bits (94), Expect = 8e-04
Identities = 23/119 (19%), Positives = 39/119 (32%), Gaps = 30/119 (25%)
Query: 136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE 195
+++G +GY A + GK++ ++ E E L I K D ++ E
Sbjct: 82 NTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD----HKIDFRE 137
Query: 196 ADARE-------GYLPEAPYDVI-----------YYGGCVSEVPSRVLNQLKKGGRILA 236
A YD I Y+ R+++ +K GG I
Sbjct: 138 GPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYH--------KRLIDLVKVGGVIGY 188
Score = 38.9 bits (91), Expect = 0.002
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 450 KVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIANISTNH-IDLIANETI 505
+EIG +GY A + G + ++ ++ + I +H ID +
Sbjct: 82 NTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPAL 141
Query: 506 EIIREF 511
++ E
Sbjct: 142 PVLDEM 147
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 40.0 bits (93), Expect = 8e-04
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLL 186
L+ L ++L LG G+ + P V V++ ++ A +
Sbjct: 36 LEPELRPEDRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYA------- 86
Query: 187 DSGRVRIVEADAREGYLPEAPYDVIYYGGC 216
++R D R+ P A +DV+ G
Sbjct: 87 HVPQLRWETMDVRKLDFPSASFDVVLEKGT 116
Score = 32.3 bits (73), Expect = 0.28
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Query: 435 PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST 494
L L ++L +G G+ L+ + P +VT + D + +A +
Sbjct: 30 SSFRALLEPELRPEDRILVLGCGNSALSYELFLGGFP--NVTSV----DYSSVVVAAMQA 83
Query: 495 NHIDL 499
+ +
Sbjct: 84 CYAHV 88
Score = 31.5 bits (71), Expect = 0.47
Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 361 AHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST 420
+ L L ++L +G G+ L+ + P +VT + D + +A +
Sbjct: 30 SSFRALLEPELRPEDRILVLGCGNSALSYELFLGGFP--NVTSV----DYSSVVVAAMQA 83
Query: 421 NHIDL 425
+ +
Sbjct: 84 CYAHV 88
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase,
usnRNA, snoRNA, telomerase, cytoplasm,
methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo
sapiens} PDB: 3egi_A*
Length = 241
Score = 40.0 bits (93), Expect = 8e-04
Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 10/97 (10%)
Query: 117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLR 176
P +IA+ V+D G G T FA +VI ++ P I +
Sbjct: 62 PEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARN 118
Query: 177 NISK-GNKDLLDSGRVRIVEADAREGYLPEAPYDVIY 212
N G D ++ + D DV++
Sbjct: 119 NAEVYGIAD-----KIEFICGDFLL-LASFLKADVVF 149
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 40.3 bits (94), Expect = 0.001
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
L +++DLG G+G P KV+ V+ P + +S N+ + LD
Sbjct: 218 LPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALD- 275
Query: 189 GRVRIVEADAREGYLPEAPYDVI 211
R + +A G + ++ +
Sbjct: 276 -RCEFMINNALSG-VEPFRFNAV 296
Score = 31.0 bits (70), Expect = 0.80
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
Query: 368 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDI---AIESI-ANISTNHI 423
+L + +++++G G+G + + P V +D A+ S N+ TN
Sbjct: 217 HLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVV----FVDESPMAVASSRLNVETNMP 271
Query: 424 DLIANETI 431
+ +
Sbjct: 272 EALDRCEF 279
Score = 31.0 bits (70), Expect = 0.80
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
Query: 442 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDI---AIESI-ANISTNHI 497
+L + +++++G G+G + + P V +D A+ S N+ TN
Sbjct: 217 HLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVV----FVDESPMAVASSRLNVETNMP 271
Query: 498 DLIANETI 505
+ +
Sbjct: 272 EALDRCEF 279
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH;
2.30A {Leptospira interrogans}
Length = 239
Score = 39.6 bits (93), Expect = 0.001
Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 376 KVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESI--ANISTNHIDLIANET 430
+++EIG+ +GY + A + G + + ++A + + N I L
Sbjct: 63 RIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLE-NKIFLKLGSA 121
Query: 431 IEIIPHILD 439
+E + ++D
Sbjct: 122 LETLQVLID 130
Score = 38.5 bits (90), Expect = 0.003
Identities = 19/129 (14%), Positives = 43/129 (33%), Gaps = 40/129 (31%)
Query: 136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE 195
+++++G+ +GY + FA + GK++ + E + + + + ++ +
Sbjct: 63 RIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLE----NKIFLKL 118
Query: 196 ADARE-----------------GYLPEAPYDVI-----------YYGGCVSEVPSRVLNQ 227
A E + D+ YY +L
Sbjct: 119 GSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYY--------PLILKL 170
Query: 228 LKKGGRILA 236
LK GG ++A
Sbjct: 171 LKPGGLLIA 179
Score = 37.3 bits (87), Expect = 0.006
Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 450 KVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESI--ANISTNHIDLIANET 504
+++EIG+ +GY + A + G + + ++A + + N I L
Sbjct: 63 RIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLE-NKIFLKLGSA 121
Query: 505 IEIIREF 511
+E ++
Sbjct: 122 LETLQVL 128
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 39.4 bits (92), Expect = 0.001
Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 27/118 (22%)
Query: 127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPE-LIEASLRNISKGNKDL 185
LK L G +L++G+G+GY + + +GVE L R
Sbjct: 30 LKGLLPPGESLLEVGAGTGYWLRRLPY-----PQKVGVEPSEAMLAVGRRR--------- 75
Query: 186 LDSGRVRIVEADAREGYLP--EAPYDVIYYGGCVSEV--PSRVLNQ----LKKGGRIL 235
+ V A LP +DV+ + V RVL + L+ GG ++
Sbjct: 76 --APEATWVRAWGEA--LPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALV 129
Score = 34.8 bits (80), Expect = 0.043
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIA 411
G +LE+G+G+GY + + G+ E M+ +
Sbjct: 36 PGESLLEVGAGTGYWLRRLPY-----PQKVGVEPSEAMLAVG 72
Score = 34.8 bits (80), Expect = 0.043
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 447 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIA 485
G +LE+G+G+GY + + G+ E M+ +
Sbjct: 36 PGESLLEVGAGTGYWLRRLPY-----PQKVGVEPSEAMLAVG 72
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 38.6 bits (90), Expect = 0.001
Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 10/115 (8%)
Query: 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK 183
+ L+ ++ VLDLG+ +G T V+ + +E+ R +
Sbjct: 14 MDALEREGLEMKIVLDLGTSTGVITEQLRKR----NTVVSTDLNIRALESH-RGGNLVRA 68
Query: 184 DLLDS---GRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRIL 235
DLL S V +V + Y+P+ +I G EV R ++ + G L
Sbjct: 69 DLLCSINQESVDVVVFN--PPYVPDTDDPIIGGGYLGREVIDRFVDAVTVGMLYL 121
Score = 30.1 bits (68), Expect = 1.1
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 11/59 (18%)
Query: 373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDI---AIESIANISTNHIDLIAN 428
VL++G+ +G + + V D+ A+ES + DL+ +
Sbjct: 23 EMKIVLDLGTSTGVITEQLR----KRNTVVST----DLNIRALESHRGGNLVRADLLCS 73
Score = 30.1 bits (68), Expect = 1.1
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 11/59 (18%)
Query: 447 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDI---AIESIANISTNHIDLIAN 502
VL++G+ +G + + V D+ A+ES + DL+ +
Sbjct: 23 EMKIVLDLGTSTGVITEQLR----KRNTVVST----DLNIRALESHRGGNLVRADLLCS 73
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Length = 242
Score = 39.2 bits (92), Expect = 0.001
Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 29/118 (24%)
Query: 136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE 195
KVL+LG+ +GY + + G+VI + + + + ++ ++++
Sbjct: 63 KVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQE----HKIKLRL 118
Query: 196 ADARE------GYLPEAPYDVI-----------YYGGCVSEVPSRVLNQLKKGGRILA 236
A + E +D I YY L + G I
Sbjct: 119 GPALDTLHSLLNEGGEHQFDFIFIDADKTNYLNYY--------ELALKLVTPKGLIAI 168
Score = 39.2 bits (92), Expect = 0.002
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 376 KVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIANISTNH-IDLIANETI 431
KVLE+G+ +GY A M+ + G V + A H I L +
Sbjct: 63 KVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPAL 122
Query: 432 EIIPHILD 439
+ + +L+
Sbjct: 123 DTLHSLLN 130
Score = 37.3 bits (87), Expect = 0.008
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 450 KVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIANISTNH-IDLIANETI 505
KVLE+G+ +GY A M+ + G V + A H I L +
Sbjct: 63 KVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPAL 122
Query: 506 EIIREF 511
+ +
Sbjct: 123 DTLHSL 128
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 39.0 bits (91), Expect = 0.002
Identities = 14/120 (11%), Positives = 38/120 (31%), Gaps = 26/120 (21%)
Query: 127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTG-KVIGVEHIPELIEASLRNISKGNKDL 185
++ + + +LD+ G+G F G+E +++ + + +
Sbjct: 34 VRSRTPEASSLLDVACGTGTHLEHFTKE----FGDTAGLELSEDMLTHARKRLP------ 83
Query: 186 LDSGRVRIVEADAREGYLPEAPYDVIY-YGGCVSEVPS---------RVLNQLKKGGRIL 235
+ + D R+ L + + V + + L+ GG ++
Sbjct: 84 ----DATLHQGDMRDFRLGR-KFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVV 138
Score = 35.1 bits (81), Expect = 0.033
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 8/73 (10%)
Query: 357 ERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGH-VTGL---EHMMDIAI 412
+ I DL + +L++ G+G GL E M+ A
Sbjct: 24 AAEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKE----FGDTAGLELSEDMLTHAR 79
Query: 413 ESIANISTNHIDL 425
+ + + + + D+
Sbjct: 80 KRLPDATLHQGDM 92
Score = 34.7 bits (80), Expect = 0.049
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 8/67 (11%)
Query: 437 ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGH-VTGL---EHMMDIAIESIANI 492
I DL + +L++ G+G GL E M+ A + + +
Sbjct: 30 IADLVRSRTPEASSLLDVACGTGTHLEHFTKE----FGDTAGLELSEDMLTHARKRLPDA 85
Query: 493 STNHIDL 499
+ + D+
Sbjct: 86 TLHQGDM 92
>1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics
hypothetical protein, structure 2 function project, S2F,
TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP:
c.66.1.14
Length = 244
Score = 38.7 bits (89), Expect = 0.002
Identities = 27/187 (14%), Positives = 69/187 (36%), Gaps = 14/187 (7%)
Query: 113 VMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFA-HMVGPTGKVIGVEHIPELI 171
V N I + + + V DLG G T ++ P K+IG+++ ++
Sbjct: 38 VPGYSNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMV 97
Query: 172 EASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVP------SRVL 225
E ++I+ + ++ V I+ D R + A ++ + +++
Sbjct: 98 ERCRQHIAAYHSEI----PVEILCNDIRHVEIKNASMVILNFTLQFLPPEDRIALLTKIY 153
Query: 226 NQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQM 285
L G ++ + K+ + + ++ + + + R AL+ + +
Sbjct: 154 EGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALE---NVMRT 210
Query: 286 DPVDENL 292
D ++ +
Sbjct: 211 DSIETHK 217
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 38.3 bits (89), Expect = 0.003
Identities = 22/131 (16%), Positives = 39/131 (29%), Gaps = 30/131 (22%)
Query: 117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTG-KVIGVEHIPELIEASL 175
+ + +L+LGS G F + + VE E I +
Sbjct: 26 FDVMHPFMVRAFTPFFRPGNLLELGSFKGD----FTSRLQEHFNDITCVEASEEAISHAQ 81
Query: 176 RNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEV------PSRVLNQ-- 227
+ G + + + E YD I ++ V P +L +
Sbjct: 82 GRLKDG---------ITYIHSRF-EDAQLPRRYDNI----VLTHVLEHIDDPVALLKRIN 127
Query: 228 ---LKKGGRIL 235
L +GGR+
Sbjct: 128 DDWLAEGGRLF 138
Score = 33.7 bits (77), Expect = 0.11
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 7/69 (10%)
Query: 368 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGH-VTGLEHMMDIAIESIANISTNHIDLI 426
+ R +LE+GS G + + + +T +E + AI + I I
Sbjct: 37 FTPFFRPGNLLELGSFKGDFTSRLQEH----FNDITCVE-ASEEAISHAQGRLKDGITYI 91
Query: 427 ANETIEIIP 435
+ E
Sbjct: 92 -HSRFEDAQ 99
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 38.8 bits (90), Expect = 0.004
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK 183
E L V G +VLDLG+G G T A +V+GVE + + + +
Sbjct: 224 QERLGPEGVRGRQVLDLGAGYGALTLPLAR---MGAEVVGVEDDLASVLSLQKGLEANA- 279
Query: 184 DLLDSGRVRIVEADAREGYLPEAPYDVI 211
+ + + +D E EA +D+I
Sbjct: 280 -----LKAQALHSDVDEALTEEARFDII 302
Score = 31.1 bits (70), Expect = 0.83
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 7/79 (8%)
Query: 347 GSAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEH 406
D S + + + RG +VL++G+G G L +A V G+E
Sbjct: 209 AGKVDPA--SLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLAR---MGAEVVGVED 263
Query: 407 MMDIAIES-IANISTNHID 424
+ ++ S + N +
Sbjct: 264 DLA-SVLSLQKGLEANALK 281
Score = 30.7 bits (69), Expect = 1.3
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 434 IPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIES-IANI 492
+ + + RG +VL++G+G G L +A V G+E + ++ S +
Sbjct: 220 LEALQERLGPEGVRGRQVLDLGAGYGALTLPLAR---MGAEVVGVEDDLA-SVLSLQKGL 275
Query: 493 STNHID 498
N +
Sbjct: 276 EANALK 281
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 37.4 bits (87), Expect = 0.006
Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 29/121 (23%)
Query: 127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTG-KVIGVEHIPELIEASLRNISKGNKDL 185
LK + +VLD+G SG + G +V G+E PE E + K +
Sbjct: 26 LKHIKKEWKEVLDIGCSSGA----LGAAIKENGTRVSGIEAFPEAAEQA---KEKLDH-- 76
Query: 186 LDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEV------PSRVLNQ----LKKGGRIL 235
V + + + + E +D + + +V P V+ + +K+ G IL
Sbjct: 77 -----VVLGDIETMDMPYEEEQFDCVIF----GDVLEHLFDPWAVIEKVKPYIKQNGVIL 127
Query: 236 A 236
A
Sbjct: 128 A 128
Score = 36.3 bits (84), Expect = 0.014
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIANISTNHID 424
+VL+IG SG L + G V+G+E + A E + ++ I+
Sbjct: 32 EWKEVLDIGCSSGALGAAIKEN-GT--RVSGIEAFPEAAEQAKEKLDHVVLGDIE 83
Score = 36.3 bits (84), Expect = 0.014
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 447 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIANISTNHID 498
+VL+IG SG L + G V+G+E + A E + ++ I+
Sbjct: 32 EWKEVLDIGCSSGALGAAIKEN-GT--RVSGIEAFPEAAEQAKEKLDHVVLGDIE 83
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet,
methyltransferase fold, structura genomics, transferase;
HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Length = 207
Score = 36.6 bits (84), Expect = 0.008
Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRV 191
++G V DLG+G+G + + +VI VE E ++ + N+ + G+
Sbjct: 48 IEGKVVADLGAGTGVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGE------FKGKF 99
Query: 192 RIVEADAREGYLPEAPYDVIYY 213
++ D E + D++
Sbjct: 100 KVFIGDVSE---FNSRVDIVIM 118
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding,
RNA methylase, RSMD, SAM-fold, RNA methyltransferase;
1.90A {Mycobacterium tuberculosis}
Length = 189
Score = 36.4 bits (85), Expect = 0.009
Identities = 23/122 (18%), Positives = 35/122 (28%), Gaps = 35/122 (28%)
Query: 132 VDGAKVLDL--GSGS--------GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKG 181
+ G VLDL GSG+ G + +F VE RNI
Sbjct: 43 LTGLAVLDLYAGSGALGLEALSRGAASVLF------------VESDQRSAAVIARNI--- 87
Query: 182 NKDLLDSGRVRIVEADAREGYL--PEAPYDVIY----YGGCVSEVPSRVLNQLKKGGRIL 235
+ L + +P D++ Y ++V +L L G
Sbjct: 88 --EALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPYNVDSADVD-AILAALGTNG-WT 143
Query: 236 AP 237
Sbjct: 144 RE 145
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase
S-adenosly-L-methionine dependent methyltransfer
posttranslational modification; 1.59A {Thermus
thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A
2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A*
3egv_A* 3cjt_A*
Length = 254
Score = 36.9 bits (86), Expect = 0.010
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 24/94 (25%)
Query: 125 ENLKLHLVDGAKVLDLGSGSGYQTCV---FAHMVGPTGKVIGVEHIPELIEASLRNISKG 181
+ L HL G KVLDLG+GSG V A +G GK +GV+ P ++ + N +
Sbjct: 112 KALARHLRPGDKVLDLGTGSG----VLAIAAEKLG--GKALGVDIDPMVLPQAEANAKR- 164
Query: 182 NKDLLDSGRVRIVEADAREGYLPE----APYDVI 211
N V EG L P+D++
Sbjct: 165 NG----------VRPRFLEGSLEAALPFGPFDLL 188
Score = 29.2 bits (66), Expect = 2.7
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
Query: 370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDI---AIE-SIANISTNHID 424
+L G KVL++G+GSG LA + A +G G G +DI + + AN N +
Sbjct: 117 HLRPGDKVLDLGTGSGVLA-IAAEKLG--GKALG----VDIDPMVLPQAEANAKRNGVR 168
Score = 29.2 bits (66), Expect = 2.7
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
Query: 444 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDI---AIE-SIANISTNHID 498
+L G KVL++G+GSG LA + A +G G G +DI + + AN N +
Sbjct: 117 HLRPGDKVLDLGTGSGVLA-IAAEKLG--GKALG----VDIDPMVLPQAEANAKRNGVR 168
>2esr_A Methyltransferase; structural genomics, hypothetical protein,
streptococcus PYO PSI, protein structure initiative;
HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Length = 177
Score = 36.0 bits (84), Expect = 0.010
Identities = 22/123 (17%), Positives = 36/123 (29%), Gaps = 35/123 (28%)
Query: 130 HLVDGAKVLDL--GSGS--------GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNIS 179
+G +VLDL GSG G V VE + NI
Sbjct: 28 PYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVL------------VEKNRKAQAIIQDNII 75
Query: 180 KGNKDLLDSGRVRIVEADA-REGYLPEAPYDVIY----YGGCVSEVPSRVLNQLKKGGRI 234
R +++ +A R +D+++ Y E + L +
Sbjct: 76 M----TKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPYA---KETIVATIEALAAKN-L 127
Query: 235 LAP 237
L+
Sbjct: 128 LSE 130
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 36.9 bits (85), Expect = 0.011
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 351 DNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGH-VTGL---EH 406
D + A +L L L H +VL++ G+G + ++ G VT + +
Sbjct: 37 DTRSRTAEYKAWLLGL--LRQHGCHRVLDVACGTGVDSIMLVEE----GFSVTSVDASDK 90
Query: 407 MMDIAIESIAN 417
M+ A++ N
Sbjct: 91 MLKYALKERWN 101
Score = 35.4 bits (81), Expect = 0.036
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 442 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGH-VTGL---EHMMDIAIESIAN 491
L H +VL++ G+G + ++ G VT + + M+ A++ N
Sbjct: 52 LLRQHGCHRVLDVACGTGVDSIMLVEE----GFSVTSVDASDKMLKYALKERWN 101
Score = 33.5 bits (76), Expect = 0.14
Identities = 26/210 (12%), Positives = 57/210 (27%), Gaps = 30/210 (14%)
Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTG-KVIGVEHIPELIEASLRNISKGNKDLLD 187
L +VLD+ G+G + + G V V+ ++++ +L+ K+
Sbjct: 53 LRQHGCHRVLDVACGTGVDSIMLVEE----GFSVTSVDASDKMLKYALKERWNRRKE-PA 107
Query: 188 SGRVRIVEADAREGYL---PEAPYDVIY----------YGGCVSEVPSRVLNQ----LKK 230
+ I EA+ +D + L ++
Sbjct: 108 FDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP 167
Query: 231 GGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQMDPVDE 290
GG ++ D N K+DL + +++ + + +
Sbjct: 168 GGLLVIDHRNYDYILSTGCAPPGK-NIYYKSDLTKDITTSVLTVNNKAHMVTL------D 220
Query: 291 NLFTLMDKDSDELFSERVWELKQDPLYTTE 320
+ D + L P
Sbjct: 221 YTVQVPGAGRDGAPGFSKFRLSYYPHCLAS 250
>2b3t_A Protein methyltransferase HEMK; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Length = 276
Score = 36.7 bits (86), Expect = 0.013
Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 13/88 (14%)
Query: 127 LKLHLVDGAKVLDLGSGSGYQTCV---FAHMVGPTGKVIGVEHIPELIEASLRNISKGNK 183
L ++LDLG+G+G + A P ++I V+ +P+ + +++ N
Sbjct: 103 LARLPEQPCRILDLGTGTG---AIALALASER-PDCEIIAVDRMPDAVS-----LAQRNA 153
Query: 184 DLLDSGRVRIVEADAREGYLPEAPYDVI 211
L + I+++D L + +I
Sbjct: 154 QHLAIKNIHILQSDWFSA-LAGQQFAMI 180
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 36.3 bits (83), Expect = 0.015
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 137 VLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPE-LIEASLRNISKGNKDLLDSGRVRIVE 195
+DLG+G G A IG++ + E L + S + I K +K L V V
Sbjct: 28 HIDLGTGDGRNIYKLAIN-DQNTFYIGIDPVKENLFDISKKIIKKPSKGGLS--NVVFVI 84
Query: 196 ADAREGYLPEA 206
A A LP
Sbjct: 85 AAAES--LPFE 93
Score = 29.8 bits (66), Expect = 1.8
Identities = 15/110 (13%), Positives = 35/110 (31%), Gaps = 13/110 (11%)
Query: 377 VLEIGSGSGYLATLMAHLVGPTGHVTG-------LEHMMDIAIESIANISTNHIDLIANE 429
+++G+G G +A G L + I+ + +++ +
Sbjct: 28 HIDLGTGDGRNIYKLAIN-DQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFV-IA 85
Query: 430 TIEIIPHIL----DLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHV 475
E +P L D + G + + + + + +A L H
Sbjct: 86 AAESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHF 135
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 36.0 bits (83), Expect = 0.017
Identities = 20/127 (15%), Positives = 41/127 (32%), Gaps = 24/127 (18%)
Query: 118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTG-KVIGVEHIPELIEASLR 176
+ + +VLD+G G G F + G + IGV+ ++I+
Sbjct: 26 ELVKARLRRYIPYFKGCRRVLDIGCGRGE----FLELCKEEGIESIGVDINEDMIKFCEG 81
Query: 177 NISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIY--------YGGCVSEVPSRVLNQL 228
+ D ++ LP+ D + + E+ S +++
Sbjct: 82 KFNVVKSDAIEY-----------LKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKM 130
Query: 229 KKGGRIL 235
K I+
Sbjct: 131 KYSSYIV 137
Score = 32.2 bits (73), Expect = 0.31
Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTG-HVTGLEH---MMDIA-----------IES 414
+VL+IG G G L G G++ M+ IE
Sbjct: 38 YFKGCRRVLDIGCGRGEFLELCKEE----GIESIGVDINEDMIKFCEGKFNVVKSDAIEY 93
Query: 415 IANISTNHIDLI-ANETIE-----IIPHILDLCYLNLHRGAKVL 452
+ ++ ++D + + +E + +L LCY + + ++
Sbjct: 94 LKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIV 137
Score = 29.5 bits (66), Expect = 2.3
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 8/63 (12%)
Query: 444 NLHRGAKVLEIGSGSGYLATLMAHLVGPTG-HVTGLEH---MMDIAIESIANISTNHIDL 499
+VL+IG G G L G G++ M+ + ++ I+
Sbjct: 38 YFKGCRRVLDIGCGRGEFLELCKEE----GIESIGVDINEDMIKFCEGKFNVVKSDAIEY 93
Query: 500 IAN 502
+ +
Sbjct: 94 LKS 96
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural
genomics, riken structural genomics/proteomics in RSGI;
HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Length = 392
Score = 36.0 bits (82), Expect = 0.024
Identities = 18/77 (23%), Positives = 23/77 (29%), Gaps = 3/77 (3%)
Query: 123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGN 182
E L L KV D S SG + F K + + IE N N
Sbjct: 42 GLEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNN 101
Query: 183 KDLLDSGRVRIVEADAR 199
+ R I +A
Sbjct: 102 ---IPEDRYEIHGMEAN 115
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics,
PSI-2, protein structure initiative; 2.30A {Haemophilus
influenzae} SCOP: c.66.1.46
Length = 201
Score = 35.2 bits (82), Expect = 0.026
Identities = 15/125 (12%), Positives = 38/125 (30%), Gaps = 36/125 (28%)
Query: 130 HLVDGAKVLDL--GSGS--------GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNIS 179
+ ++ LD GSGS + F +E + +N+
Sbjct: 50 PYIHQSECLDGFAGSGSLGFEALSRQAKKVTF------------LELDKTVANQLKKNLQ 97
Query: 180 KGNKDLLDSGRVRIVEADAR---EGYLPEAPYDVIY----YGGCVSEVPSRVLNQLKKGG 232
S + ++ + + + +DV++ + + + ++ L +
Sbjct: 98 TLK---CSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPFH---FNLAEQAISLLCENN 151
Query: 233 RILAP 237
L P
Sbjct: 152 -WLKP 155
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics,
PSI-2, protein structure initiative; HET: SAH; 2.00A
{Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A
2pkw_A
Length = 258
Score = 35.5 bits (81), Expect = 0.026
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 8/86 (9%)
Query: 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPE----LIEASLRNISKGNKDLLDS 188
V+D +G G V A + +V +E P L + R +
Sbjct: 88 YLPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQ 144
Query: 189 GRVRIVEADAREGYL-PEAPYDVIYY 213
R++++ A + V+Y
Sbjct: 145 ERLQLIHASSLTALTDITPRPQVVYL 170
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural
genomics, protein structure initiative, pyrococc
furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Length = 230
Score = 35.2 bits (82), Expect = 0.029
Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 12/88 (13%)
Query: 127 LKLHLVDGAKVLDLGSGSGYQTCV---FAHMVGPTGKVIGVEHIPELIEASLRNISKGNK 183
LK L G L++G+G + A KV E E E + RNI +
Sbjct: 49 LKTFLRGGEVALEIGTGHT---AMMALMAEKF-FNCKVTATEVDEEFFEYARRNI----E 100
Query: 184 DLLDSGRVRIVEADAREGYLPEAPYDVI 211
+ R+ +G + E +DVI
Sbjct: 101 RNNSNVRLVKSNGGIIKG-VVEGTFDVI 127
Score = 28.7 bits (65), Expect = 4.1
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 9/58 (15%)
Query: 371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA----NISTNHID 424
L G LEIG+G + LMA VT ++ E NI N+ +
Sbjct: 53 LRGGEVALEIGTGHTAMMALMAEKF-FNCKVTAT----EVDEEFFEYARRNIERNNSN 105
Score = 28.7 bits (65), Expect = 4.1
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 9/58 (15%)
Query: 445 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA----NISTNHID 498
L G LEIG+G + LMA VT ++ E NI N+ +
Sbjct: 53 LRGGEVALEIGTGHTAMMALMAEKF-FNCKVTAT----EVDEEFFEYARRNIERNNSN 105
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 35.8 bits (83), Expect = 0.030
Identities = 26/169 (15%), Positives = 57/169 (33%), Gaps = 28/169 (16%)
Query: 78 IRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKV 137
+ A + + E V + + +M P Q+ A+ + + ++ KV
Sbjct: 117 VLKGGTA-----ISSEGTLSPEHPVWVQFAKAMSPMMANPAQLI--AQLVNENKIEPLKV 169
Query: 138 LDLGSGSGYQTCVFAHMVG---PTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIV 194
LD+ + G +F V P ++ GV+ ++E + N + R +
Sbjct: 170 LDISASHG----LFGIAVAQHNPNAEIFGVD-WASVLEVAKENARIQG----VASRYHTI 220
Query: 195 EADAREGYLPEAPYDVIYYGGCVSEVP--------SRVLNQLKKGGRIL 235
A E YD++ + ++ L G+++
Sbjct: 221 AGSAFEVDYGN-DYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVI 268
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 35.1 bits (81), Expect = 0.031
Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 12/115 (10%)
Query: 130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG 189
+L + ++LD+G GSG + A V G++ E I + + G
Sbjct: 27 YLQEDDEILDIGCGSGKISLELASKG---YSVTGIDINSEAIRLAETAARSPGLNQKTGG 83
Query: 190 RVRIVEADAREGYLPEAPYDVIYYGGCVSEVP-----SRVLNQ----LKKGGRIL 235
+ +A ++ +D ++ VP SR++ + LK G +
Sbjct: 84 KAEFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLY 138
Score = 33.2 bits (76), Expect = 0.13
Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 354 PSSERSIAH--ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMM 408
S + + + + + L ++L+IG GSG ++ +A VTG+ +
Sbjct: 9 VSGKNIPSSLDLYPIIHNYLQEDDEILDIGCGSGKISLELASKG---YSVTGIDINSEAI 65
Query: 409 DIA 411
+A
Sbjct: 66 RLA 68
Score = 32.8 bits (75), Expect = 0.16
Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 424 DLIANETIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EH 480
+ ++ + I + + + L ++L+IG GSG ++ +A VTG+
Sbjct: 7 EKVSGKNIPSSLDLYPIIHNYLQEDDEILDIGCGSGKISLELASKG---YSVTGIDINSE 63
Query: 481 MMDIA 485
+ +A
Sbjct: 64 AIRLA 68
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump
domain, tRNA methyltransferase; HET: SAM; 1.95A
{Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Length = 373
Score = 35.6 bits (82), Expect = 0.032
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 123 AAENLKLHLVDGAKVLDLGSGSGYQTCVF-AHMVGPTGKVIGVEHIPELIEASLRNISKG 181
A ++L +DG VLD GSG T + + +G++IG+E + + + N
Sbjct: 207 ANAMIELAELDGGSVLDPMCGSG--TILIELALRRYSGEIIGIEKYRKHLIGAEMNALAA 264
Query: 182 NKDLLDSGRVRIVEADAREGYLPEAPYDVI 211
+++ ++ DA + D
Sbjct: 265 GVL----DKIKFIQGDATQLSQYVDSVDFA 290
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 35.4 bits (81), Expect = 0.037
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 16/115 (13%)
Query: 130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG 189
H+ VLD+G G+G +FA G KV+GV+ L +A +I + NK
Sbjct: 61 HIFKDKVVLDVGCGTGI-LSMFAAKAGAK-KVLGVDQSEILYQA--MDIIRLNK---LED 113
Query: 190 RVRIVEADAREGYLPEAPYDVI---------YYGGCVSEVPSRVLNQLKKGGRIL 235
+ +++ E +LP DVI + + V L KGG +
Sbjct: 114 TITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168
Score = 30.0 bits (67), Expect = 1.9
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHM--MDIAIESI-ANISTNHIDLIAN- 428
+ VL++G G+G L+ + A G V G++ + A++ I N + I LI
Sbjct: 64 KDKVVLDVGCGTGILS-MFAAKAGAK-KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGK 121
Query: 429 -ETIEIIPHILDLC 441
E + + +D+
Sbjct: 122 IEEVHLPVEKVDVI 135
Score = 29.3 bits (65), Expect = 3.0
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 447 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHM--MDIAIESI-ANISTNHIDLI 500
+ VL++G G+G L+ + A G V G++ + A++ I N + I LI
Sbjct: 64 KDKVVLDVGCGTGILS-MFAAKAGAK-KVLGVDQSEILYQAMDIIRLNKLEDTITLI 118
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 34.9 bits (80), Expect = 0.045
Identities = 37/206 (17%), Positives = 61/206 (29%), Gaps = 26/206 (12%)
Query: 70 NHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKL 129
H D+ K + +K R + E Q A L + I +
Sbjct: 24 RHQFDMAKEGYVNLLPVQHKRSRDPGDSAEMMQARRAFLDAGHYQPLRDAIVAQL--RER 81
Query: 130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIE-ASLRNISKGNKDLLDS 188
VLD+G G GY T FA P G++ I+ A+ R
Sbjct: 82 LDDKATAVLDIGCGEGYYTHAFAD-ALPEITTFGLDVSKVAIKAAAKRY----------- 129
Query: 189 GRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRV---LNQLKKGGRIL----APIGPM 241
+V A + + D I P + +K GG ++ P M
Sbjct: 130 PQVTFCVASSHRLPFSDTSMDAI----IRIYAPCKAEELARVVKPGGWVITATPGPRHLM 185
Query: 242 DDFQKLTQIDRFHDNTLQKTDLFEVA 267
+ + H ++ + F +
Sbjct: 186 ELKGLIYNEVHLHAPHAEQLEGFTLQ 211
Score = 28.0 bits (62), Expect = 7.7
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 435 PHILDLCYLNL-HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA 490
I+ L + VL+IG G GY A P GL D++ +I
Sbjct: 72 DAIVAQLRERLDDKATAVLDIGCGEGYYTHAFAD-ALPEITTFGL----DVSKVAIK 123
Score = 27.6 bits (61), Expect = 8.5
Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 6/56 (10%)
Query: 362 HILDLCYLNL-HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA 416
I+ L + VL+IG G GY A P GL D++ +I
Sbjct: 73 AIVAQLRERLDDKATAVLDIGCGEGYYTHAFAD-ALPEITTFGL----DVSKVAIK 123
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation,
transferase transferase inhibitor complex; HET: SAH;
1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A*
3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A*
1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A*
3s68_A* 2zlb_A 2zth_A* ...
Length = 221
Score = 34.2 bits (79), Expect = 0.059
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 361 AHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESI-- 415
I+D + + + VLE+G+ GY A MA L+ P + +E I + +
Sbjct: 47 GQIMDAV-IREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNF 105
Query: 416 ANISTNHIDLIANETIEIIPHILD 439
A + + + ++ + ++IP +
Sbjct: 106 AGLQ-DKVTILNGASQDLIPQLKK 128
Score = 33.1 bits (76), Expect = 0.13
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 450 KVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESI--ANISTNHIDLI---A 501
VLE+G+ GY A MA L+ P + +E I + + A + + + ++ +
Sbjct: 61 LVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQ-DKVTILNGAS 119
Query: 502 NETIEIIRE 510
+ I +++
Sbjct: 120 QDLIPQLKK 128
Score = 33.1 bits (76), Expect = 0.16
Identities = 12/65 (18%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE 195
VL+LG+ GY A ++ P +++ +E P+ + + ++ +V I+
Sbjct: 61 LVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQ----DKVTILN 116
Query: 196 ADARE 200
+++
Sbjct: 117 GASQD 121
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 34.4 bits (79), Expect = 0.063
Identities = 22/120 (18%), Positives = 34/120 (28%), Gaps = 21/120 (17%)
Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIE-ASLRNISKGNKDLLDSGRVR 192
++D G G G + G +V GV + + R D VR
Sbjct: 118 DDTLVDAGCGRGGSMVMAHRRFGS--RVEGVTLSAAQADFGNRRARELRIDD-----HVR 170
Query: 193 IVEADAREGYLPEAPYDVIY---------YGGCVSEVPSRVLNQLKKGGRILAPIGPMDD 243
+ + + + SE SR LK GGR + G +
Sbjct: 171 SRVCNMLDTPFDKGAVTASWNNESTMYVDLHDLFSEH-SRF---LKVGGRYVTITGCWNP 226
Score = 31.8 bits (72), Expect = 0.53
Identities = 10/77 (12%), Positives = 18/77 (23%), Gaps = 16/77 (20%)
Query: 356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESI 415
++D +++ G G G + G V G+
Sbjct: 101 ESAQAEFLMDHL-GQAGPDDTLVDAGCGRGGSMVMAHRRFGS--RVEGV----------- 146
Query: 416 ANISTNHIDLIANETIE 432
+S D N
Sbjct: 147 -TLSAAQADF-GNRRAR 161
Score = 29.8 bits (67), Expect = 2.2
Identities = 10/71 (14%), Positives = 18/71 (25%), Gaps = 16/71 (22%)
Query: 436 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN 495
++D +++ G G G + G V G+ +S
Sbjct: 107 FLMDHL-GQAGPDDTLVDAGCGRGGSMVMAHRRFGS--RVEGV------------TLSAA 151
Query: 496 HIDLIANETIE 506
D N
Sbjct: 152 QADF-GNRRAR 161
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 34.3 bits (78), Expect = 0.065
Identities = 17/115 (14%), Positives = 30/115 (26%), Gaps = 15/115 (13%)
Query: 136 KVLDLGSGSGYQTCVF-----AHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGR 190
K+L +G G+G A G VE E I ++K +
Sbjct: 55 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFA 114
Query: 191 VRIVEAD----AREGYLPEAPYDVIYYGGCVSEVP------SRVLNQLKKGGRIL 235
+ +D I+ + V + L ++L
Sbjct: 115 WHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKML 169
Score = 33.5 bits (76), Expect = 0.14
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 9/70 (12%)
Query: 432 EIIPHILDLCYLNLHRGAKVLEIGSGSGY-----LATLMAHLVGPTGHVTGLE---HMMD 483
+ +P I+ + K+L IG G+G L+ + A G + +E +
Sbjct: 38 KKLPGIIGRIG-DTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIA 96
Query: 484 IAIESIANIS 493
E +A S
Sbjct: 97 KYKELVAKTS 106
Score = 32.4 bits (73), Expect = 0.27
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 9/71 (12%)
Query: 357 ERSIAHILDLCYLNLHRGAKVLEIGSGSGY-----LATLMAHLVGPTGHVTGLE---HMM 408
++ + I+ + K+L IG G+G L+ + A G + +E +
Sbjct: 37 DKKLPGIIGRIG-DTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQI 95
Query: 409 DIAIESIANIS 419
E +A S
Sbjct: 96 AKYKELVAKTS 106
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural
genomics, PSI, protein structure initiative; HET: MSE;
1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Length = 187
Score = 33.7 bits (78), Expect = 0.083
Identities = 20/127 (15%), Positives = 37/127 (29%), Gaps = 39/127 (30%)
Query: 130 HLVDGAKVLDL--GSGS--------GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNIS 179
DG LDL GSG G + +E ++ NI+
Sbjct: 41 PYFDGGMALDLYSGSGGLAIEAVSRGMDKSIC------------IEKNFAALKVIKENIA 88
Query: 180 KGNKDLLDSGRVRIVEADAREGYL-----PEAPYDVI-----YYGGCVSEVPSRVLNQ-- 227
+ + + + DA L + +D++ Y + ++L +
Sbjct: 89 I----TKEPEKFEVRKMDANR-ALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQL 143
Query: 228 LKKGGRI 234
L I
Sbjct: 144 LTNEAVI 150
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 34.3 bits (79), Expect = 0.093
Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 14/109 (12%)
Query: 368 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDI---AIES-IANISTNHI 423
L H KVL++G G+G L+ A P +T + D+ A+E+ A ++ N +
Sbjct: 191 TLTPHTKGKVLDVGCGAGVLSVAFARH-SPKIRLT----LCDVSAPAVEASRATLAANGV 245
Query: 424 D--LIANETIEIIPHILDLCYLN--LHRGAKVLEIGSGSGYLATLMAHL 468
+ + A+ + D+ N H G + + + + + HL
Sbjct: 246 EGEVFASNVFSEVKGRFDMIISNPPFHDGMQT-SLDAAQTLIRGAVRHL 293
Score = 31.2 bits (71), Expect = 0.77
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI 193
KVLD+G G+G + FA P ++ + +EAS ++ +
Sbjct: 197 KGKVLDVGCGAGVLSVAFA-RHSPKIRLTLCDVSAPAVEASRATLAANG------VEGEV 249
Query: 194 VEADAREGYLPEAPYDVI 211
++ + +D+I
Sbjct: 250 FASNVFSE--VKGRFDMI 265
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 33.8 bits (77), Expect = 0.11
Identities = 29/198 (14%), Positives = 54/198 (27%), Gaps = 23/198 (11%)
Query: 293 FTLMDKDSDELFSERVWELKQDPLYTTEKWIPQPPGYTTPGEITTRDKYGRLVHGSAPDN 352
F + ++ D + P PQ
Sbjct: 46 FYELTENGDVIAEHIFTPESHIPFVE-----PQAWHRVEALSDDLECTL-GFYCKKEDYF 99
Query: 353 GPSSERSIAHILDLCYLNLHRGAKVLEIGSGSG----YLATLMAHLVGPTGHVTGLEHMM 408
+ H + + KVL++G G G YL+ L + + + +
Sbjct: 100 SKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLN 159
Query: 409 DIAIESIANISTNHIDLIA---NETIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLM 465
+ + NIST D+ A E + I + +LN R +++ M
Sbjct: 160 ETKEKENLNISTALYDINAANIQENYDFIVSTVVFMFLNRERVPSIIK----------NM 209
Query: 466 AHLVGPTGHVTGLEHMMD 483
G+ + M
Sbjct: 210 KEHTNVGGYNLIVAAMST 227
Score = 33.8 bits (77), Expect = 0.12
Identities = 22/116 (18%), Positives = 33/116 (28%), Gaps = 20/116 (17%)
Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTG-KVIGVEHIPELIEASLRNISKGNKDLLD 187
++ KVLDLG G G + + + G V +H I L +
Sbjct: 116 AKIISPCKVLDLGCGQGRNSLYLSLL----GYDVTSWDHNENSIAF-LNETKEKENL--- 167
Query: 188 SGRVRIVEADAREGYLPEAPYDVIYYGGC--------VSEVPSRVLNQLKKGGRIL 235
+ D + E YD I V + + GG L
Sbjct: 168 --NISTALYDINAANIQE-NYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNL 220
Score = 31.1 bits (70), Expect = 0.74
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 435 PHILDLCYLNLHRGAKVLEIGSGSG----YLATLMAHLVGPTGHVTGLEHMMDIAIESIA 490
H + + KVL++G G G YL+ L + + + + + +
Sbjct: 108 IHGDVVDAAKIISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENL 167
Query: 491 NISTNHIDL 499
NIST D+
Sbjct: 168 NISTALYDI 176
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 1.80A
{Neisseria gonorrhoeae}
Length = 258
Score = 33.6 bits (76), Expect = 0.11
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 10/93 (10%)
Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPEL---IEASLRNISKGNKD 184
++ V D +G G + V A + V E P + + +R +
Sbjct: 78 AVNHTAHPTVWDATAGLGRDSFVLASLG---LTVTAFEQHPAVACLLSDGIRRALLNPET 134
Query: 185 LLDSGRVRIVEADAREGYL----PEAPYDVIYY 213
+ R+ + +A E + D++Y
Sbjct: 135 QDTAARINLHFGNAAEQMPALVKTQGKPDIVYL 167
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Length = 349
Score = 33.9 bits (77), Expect = 0.11
Identities = 39/142 (27%), Positives = 54/142 (38%), Gaps = 23/142 (16%)
Query: 130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG 189
HL VLD+GSG+G C+FA G KVIG+E I I K NK
Sbjct: 63 HLFKDKVVLDVGSGTGI-LCMFAAKAGAR-KVIGIECSS--ISDYAVKIVKANK---LDH 115
Query: 190 RVRIVEADAREGYLPEAPYDVI---------YYGGCVSEVPSRVLNQLKKGGRILAP--- 237
V I++ E LP D+I +Y ++ V L G I P
Sbjct: 116 VVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF-PDRA 174
Query: 238 ---IGPMDDFQKLTQIDRFHDN 256
+ ++D Q + +N
Sbjct: 175 TLYVTAIEDRQYKDYKIHWWEN 196
Score = 29.3 bits (65), Expect = 3.2
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 447 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIE 506
+ VL++GSG+G L + A G V G+E I+ ++ + N +D +
Sbjct: 66 KDKVVLDVGSGTGILC-MFAAKAGAR-KVIGIE-CSSISDYAVKIVKANKLD----HVVT 118
Query: 507 IIR 509
II+
Sbjct: 119 IIK 121
Score = 29.3 bits (65), Expect = 3.6
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE--HMMDIAIESI-ANISTNHIDLIAN- 428
+ VL++GSG+G L + A G V G+E + D A++ + AN + + +I
Sbjct: 66 KDKVVLDVGSGTGILC-MFAAKAGAR-KVIGIECSSISDYAVKIVKANKLDHVVTIIKGK 123
Query: 429 -ETIEIIPHILDLC 441
E +E+ +D+
Sbjct: 124 VEEVELPVEKVDII 137
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure initiative;
1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Length = 200
Score = 33.1 bits (75), Expect = 0.12
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISK 180
+ G V+D G+G+G ++++G V + P+ IE + RN
Sbjct: 45 YNDGNIGGRSVIDAGTGNGIL-ACGSYLLGA-ESVTAFDIDPDAIETAKRNCGG 96
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA
PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Length = 375
Score = 33.5 bits (76), Expect = 0.13
Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 20/107 (18%)
Query: 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGR 190
L +G +DLG+ G T V V++ P + SL + G+
Sbjct: 209 LANGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGP--MAQSLMDT----------GQ 253
Query: 191 VRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAP 237
V + D + + + V ++ + + L
Sbjct: 254 VTWLREDGFKFRPTRSNISWM-----VCDMVEKPAKVAALMAQWLVN 295
>1ws6_A Methyltransferase; structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.50A {Thermus
thermophilus} SCOP: c.66.1.46
Length = 171
Score = 32.9 bits (76), Expect = 0.13
Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 35/128 (27%)
Query: 127 LKLHLVDGAKVLDL--GSGS--------GYQTCVFAHMVGPTGKVIGVEHIPELIEASLR 176
L+L + LD GSG+ G++ V VE PE +
Sbjct: 35 LRLRYPRRGRFLDPFAGSGAVGLEAASEGWE-AVL------------VEKDPEAVRLLKE 81
Query: 177 NISKGNKDLLDSGRVRIVEADAREGYL--PEAPYDVIY----YGGCVSEVPSRVLNQ--L 228
N+ + RV + + + V + Y ++ + +L +
Sbjct: 82 NVRR----TGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYAMDLAALFGELLASGLV 137
Query: 229 KKGGRILA 236
+ GG +
Sbjct: 138 EAGGLYVL 145
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein
structure initiative; HET: MSE; 1.47A {Corynebacterium
glutamicum atcc 13032}
Length = 317
Score = 33.4 bits (76), Expect = 0.15
Identities = 26/97 (26%), Positives = 33/97 (34%), Gaps = 10/97 (10%)
Query: 119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCV-FAHMVGPTGKVIGVEHIPELIEASLRN 177
IA A D +K+ G G T + V P + VE EL S
Sbjct: 73 WIATGARAFIDAHQDASKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREW 132
Query: 178 ISKGNKDLLDSGRVRIVEADAREGYL---PEAPYDVI 211
D+ + RV+I DAR A DVI
Sbjct: 133 F-----DIPRAPRVKIRVDDARM-VAESFTPASRDVI 163
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification
enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus
jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Length = 336
Score = 33.3 bits (76), Expect = 0.19
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 122 DAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKG 181
+ + V+D+ +G G + + K+ ++ P IE +NI K
Sbjct: 184 GERARIMKKVSLNDVVVDMFAGVGPFSIACKNAK----KIYAIDINPHAIELLKKNI-KL 238
Query: 182 NKDLLDSGRVRIVEADARE 200
NK ++ + +D RE
Sbjct: 239 NK---LEHKIIPILSDVRE 254
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold,
beta-barrel, symmetric arginine dimethylase, SAM
binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB:
3ua4_A
Length = 745
Score = 33.4 bits (75), Expect = 0.22
Identities = 22/113 (19%), Positives = 30/113 (26%), Gaps = 17/113 (15%)
Query: 120 IADAAENLKLHLVDGAKVLDLGSGSG------------YQTCVFAHMVGPTGKVIGVEHI 167
+ A ++L + LG G G Y K+ VE
Sbjct: 396 VVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKN 455
Query: 168 PELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEV 220
P I N RV I+E+D R VSE+
Sbjct: 456 PNAIVTLKYM----NVRTWK-RRVTIIESDMRSLPGIAKDRGFEQPDIIVSEL 503
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent
methyltransferase fold, trans; HET: SAM; 2.00A
{Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB:
2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Length = 318
Score = 32.6 bits (75), Expect = 0.24
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTG-HVTGL 404
+ LD L+L G +L+IG G G T M V +V GL
Sbjct: 79 VDLNLDK--LDLKPGMTLLDIGCGWG---TTMRRAVERFDVNVIGL 119
Score = 31.8 bits (73), Expect = 0.51
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 436 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTG-HVTGL 478
LD L+L G +L+IG G G T M V +V GL
Sbjct: 81 LNLDK--LDLKPGMTLLDIGCGWG---TTMRRAVERFDVNVIGL 119
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 32.7 bits (75), Expect = 0.25
Identities = 23/112 (20%), Positives = 36/112 (32%), Gaps = 21/112 (18%)
Query: 136 KVLDLGSGSGYQTCVFAHMVG---PTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVR 192
V+DL G G + V P + +P +A+ + I + GRV
Sbjct: 182 TVIDLAGGHG----TYLAQVLRRHPQLTGQIWD-LPTTRDAARKTIHAHD----LGGRVE 232
Query: 193 IVEADAREGYLPEAP-YDVIYYG--------GCVSEVPSRVLNQLKKGGRIL 235
E + + E DV+ EV +K GG +L
Sbjct: 233 FFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALL 284
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP:
c.66.1.56
Length = 409
Score = 32.8 bits (74), Expect = 0.25
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Query: 129 LHLVDGAKVLDLGSGSGYQTCVFA-HMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
L D K++D G+ G G +V +E ++ + + D
Sbjct: 222 LRFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR-YTDTNF 280
Query: 188 SGRVRIVEA 196
+ R+ +
Sbjct: 281 ASRITVHGC 289
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral
enzyme structure; HET: SFG; 1.90A {Wesselsbron virus}
PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Length = 300
Score = 32.6 bits (74), Expect = 0.27
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 18/89 (20%)
Query: 128 KLHLVDGAKVLDLGSGSG---YQTCVFAHMVGPTGKVIGVE--HIPELIEASLRNISKGN 182
+ +L +VLDLG G G Y ++ G +G+E P ++ NI K
Sbjct: 76 RGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVK-- 133
Query: 183 KDLLDSGRVRIVEADAREGYLPEAPYDVI 211
+ + +P P D +
Sbjct: 134 -----------FKDKSNVFTMPTEPSDTL 151
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Length = 313
Score = 32.6 bits (73), Expect = 0.29
Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 4/101 (3%)
Query: 120 IADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIE-ASLR-N 177
I + E ++ VLDLG G G + K++ + ++ R
Sbjct: 21 IGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKG--RINKLVCTDIADVSVKQCQQRYE 78
Query: 178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVS 218
K +D + AD+ + L + D S
Sbjct: 79 DMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICS 119
Score = 30.7 bits (68), Expect = 1.1
Identities = 16/82 (19%), Positives = 24/82 (29%), Gaps = 6/82 (7%)
Query: 360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS 419
I L+ R VL++G G G G + DIA S+
Sbjct: 21 IGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKK--GRINKLVCT----DIADVSVKQCQ 74
Query: 420 TNHIDLIANETIEIIPHILDLC 441
+ D+ E I +
Sbjct: 75 QRYEDMKNRRDSEYIFSAEFIT 96
Score = 29.5 bits (65), Expect = 2.3
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 6/67 (8%)
Query: 433 IIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI 492
+I L+ R VL++G G G G + DIA S+
Sbjct: 20 LIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKK--GRINKLVCT----DIADVSVKQC 73
Query: 493 STNHIDL 499
+ D+
Sbjct: 74 QQRYEDM 80
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 32.4 bits (73), Expect = 0.30
Identities = 26/142 (18%), Positives = 48/142 (33%), Gaps = 19/142 (13%)
Query: 127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIE-ASLRNISKGNKDL 185
++L+ G VLDLG G G + G+ GV+ I A +R + +
Sbjct: 58 IRLYTKRGDSVLDLGCGKGGDLLKYER--AGIGEYYGVDIAEVSINDARVRARNMKRRF- 114
Query: 186 LDSGRVRIVEADAREGYL-PEAPYDVIYYGGCVSEVPS----------RVLNQLKKGGRI 234
+V D+ ++ +DVI S + L+ GG
Sbjct: 115 ----KVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYF 170
Query: 235 LAPIGPMDDFQKLTQIDRFHDN 256
+ + D + + R ++
Sbjct: 171 IMTVPSRDVILERYKQGRMSND 192
Score = 32.4 bits (73), Expect = 0.31
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 366 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIE 413
L L RG VL++G G G G G+ E ++ A
Sbjct: 57 LIRLYTKRGDSVLDLGCGKGGDLLKYER--AGIGEYYGVDIAEVSINDARV 105
Score = 32.4 bits (73), Expect = 0.31
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIE 487
L L RG VL++G G G G G+ E ++ A
Sbjct: 57 LIRLYTKRGDSVLDLGCGKGGDLLKYER--AGIGEYYGVDIAEVSINDARV 105
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Escherichia coli} SCOP: c.66.1.20
Length = 207
Score = 31.9 bits (73), Expect = 0.31
Identities = 27/166 (16%), Positives = 59/166 (35%), Gaps = 37/166 (22%)
Query: 120 IADAAENLKLHLVD---------GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPEL 170
+ D E L H++D G + +D+G+G G + +V P L
Sbjct: 43 VRDPNEMLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLS-IVRPEAHFT-------L 94
Query: 171 IEASLRNIS--KGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVS-------EVP 221
+++ + + + + L + V++ E + E P+D + +S ++
Sbjct: 95 LDSLGKRVRFLRQVQHELKLENIEPVQSRV-EEFPSEPPFDGV-----ISRAFASLNDMV 148
Query: 222 SRVLNQLKKGGRILAPIGP-----MDDFQKLTQIDRFHDNTLQKTD 262
S + + GR A G + + Q++ + D
Sbjct: 149 SWCHHLPGEQGRFYALKGQMPEDEIALLPEEYQVESVVKLQVPALD 194
Score = 31.1 bits (71), Expect = 0.53
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 422 HIDLIANETIE--IIPHILD-LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478
+L + ++ HILD + +G + +++G+G G ++ +V P H T L
Sbjct: 37 AYNLTSVRDPNEMLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLS-IVRPEAHFTLL 95
Query: 479 E 479
+
Sbjct: 96 D 96
Score = 29.2 bits (66), Expect = 2.2
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 362 HILD-LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE 405
HILD + +G + +++G+G G ++ +V P H T L+
Sbjct: 53 HILDSIVVAPYLQGERFIDVGTGPGLPGIPLS-IVRPEAHFTLLD 96
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Length = 274
Score = 32.2 bits (73), Expect = 0.34
Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 9/66 (13%)
Query: 137 VLDLGSGSGYQTCV--FAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIV 194
LDLGSG A V P +V+ V+ P ++ G L +
Sbjct: 81 FLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLT-------HGRALLAKDPNTAVF 133
Query: 195 EADARE 200
AD R+
Sbjct: 134 TADVRD 139
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand
complex, cytoplasm, lipid synthesis, methyltransferase;
HET: D22; 2.39A {Mycobacterium tuberculosis} PDB:
1kpi_A*
Length = 302
Score = 32.2 bits (74), Expect = 0.38
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 404
LD LNL G +L+IG G G +V GL
Sbjct: 61 RKLALDK--LNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGL 101
Score = 31.0 bits (71), Expect = 0.79
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 436 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478
LD LNL G +L+IG G G +V GL
Sbjct: 63 LALDK--LNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGL 101
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine
methyltransferase, methylation; HET: SAH; 2.61A
{Arabidopsis thaliana}
Length = 376
Score = 32.1 bits (72), Expect = 0.41
Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG 189
H +G VLD+G+GSG A G KV VE A R + K N
Sbjct: 60 HHFEGKTVLDVGTGSGILAIWSAQA-GAR-KVYAVEATKMADHA--RALVKANN---LDH 112
Query: 190 RVRIVEADAREGYLPEAPYDVI 211
V ++E + LPE DVI
Sbjct: 113 IVEVIEGSVEDISLPE-KVDVI 133
Score = 29.4 bits (65), Expect = 3.1
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEH--MMDIAIESI-ANISTNHIDLIANE 429
G VL++G+GSG LA A G V +E M D A + AN + +++I
Sbjct: 63 EGKTVLDVGTGSGILAIWSAQA-GAR-KVYAVEATKMADHARALVKANNLDHIVEVIEGS 120
Query: 430 TIEI-IPHILDLC 441
+I +P +D+
Sbjct: 121 VEDISLPEKVDVI 133
Score = 29.4 bits (65), Expect = 3.3
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 447 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIE 506
G VL++G+GSG LA A G V +E +A + A + N++D +E
Sbjct: 63 EGKTVLDVGTGSGILAIWSAQA-GAR-KVYAVE-ATKMADHARALVKANNLD----HIVE 115
Query: 507 IIR 509
+I
Sbjct: 116 VIE 118
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1;
mixed alpha beta fold, structural genomics, PSI; HET:
SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP:
c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Length = 287
Score = 31.8 bits (73), Expect = 0.42
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 404
I L L L G +L++G G G +V GL
Sbjct: 53 IDLALGK--LGLQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGL 93
Score = 31.0 bits (71), Expect = 0.90
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 436 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478
L L L G +L++G G G +V GL
Sbjct: 55 LALGK--LGLQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGL 93
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine
synthase, riken STR genomics/proteomics initiative,
RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB:
3anx_A*
Length = 314
Score = 31.9 bits (73), Expect = 0.46
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 163 GVEHI------PELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAP--YDVI 211
VE EL+E + R++ + ++ D R +V DAR YL YDV+
Sbjct: 100 TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARA-YLERTEERYDVV 155
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine, RNA metabolism, mRNA
processing, methyltransferase, poxvirus; HET: SAH; 2.70A
{Vaccinia virus}
Length = 302
Score = 31.7 bits (71), Expect = 0.49
Identities = 24/191 (12%), Positives = 58/191 (30%), Gaps = 20/191 (10%)
Query: 120 IADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIE-ASLRNI 178
I+ L + KVL + G+G + + G ++ + + I + R
Sbjct: 35 ISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFY--GEIALLVATDPDADAIARGNERYN 92
Query: 179 SKGNKDLLDSGRVRIVEADAR--------EGYLPEAPYDVIYYGGCV---------SEVP 221
+ + ++ R +++I + + + V
Sbjct: 93 KLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVM 152
Query: 222 SRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIH 281
+ + GG++L D KLT F + + ++ + I + +
Sbjct: 153 NNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDRIVVYNP 212
Query: 282 KFQMDPVDENL 292
P+ E +
Sbjct: 213 STMSTPMTEYI 223
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 31.3 bits (71), Expect = 0.52
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 7/72 (9%)
Query: 234 ILAPIGPMDDFQKLTQI----DRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQMDPVD 289
+ + D K D D TL + DL + + + + + +M +
Sbjct: 89 VFSDTATPDI--KSHYAFRIFDFDDDGTLNREDLSRLV-NCLTGEGEDTRLSASEMKQLI 145
Query: 290 ENLFTLMDKDSD 301
+N+ D D D
Sbjct: 146 DNILEESDIDRD 157
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase,
rossmann fold, polyamine biosynthesis, spermidine
biosynthesis, transferase; 2.90A {Escherichia coli} PDB:
3o4f_A
Length = 294
Score = 31.5 bits (72), Expect = 0.52
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 9/57 (15%)
Query: 163 GVEHI------PELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAP--YDVI 211
VE I ++ + + N D R ++V D ++ + +DVI
Sbjct: 106 NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVN-FVNQTSQTFDVI 161
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM
MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB:
1nv9_A* 1vq1_A* 1sg9_A*
Length = 284
Score = 31.3 bits (72), Expect = 0.60
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 15/84 (17%)
Query: 133 DGAKVLDLGSGSGYQTCV---FAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD-S 188
V D+G+GSG + A V + + +E I++ N + S
Sbjct: 123 GIKTVADIGTGSG---AIGVSVAKF--SDAIVFATDVSSKAVE-----IARKNAERHGVS 172
Query: 189 GRVRIVEADAREGYLPE-APYDVI 211
R + + + E + + A ++I
Sbjct: 173 DRFFVRKGEFLEPFKEKFASIEMI 196
Score = 28.6 bits (65), Expect = 4.3
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 366 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA 416
L + + V +IG+GSG + +A V D++ +++
Sbjct: 116 LELIRKYGIKTVADIGTGSGAIGVSVAKF--SDAIVFAT----DVSSKAVE 160
Score = 28.6 bits (65), Expect = 4.3
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA 490
L + + V +IG+GSG + +A V D++ +++
Sbjct: 116 LELIRKYGIKTVADIGTGSGAIGVSVAKF--SDAIVFAT----DVSSKAVE 160
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain,
beta-barrel, mixed alpha-beta, hexamer; 2.90A
{Saccharomyces cerevisiae} SCOP: c.66.1.6
Length = 328
Score = 31.6 bits (71), Expect = 0.63
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG 189
L VLD+G G+G +FA G VIGV+ + A + + + N S
Sbjct: 35 DLFKDKIVLDVGCGTGI-LSMFAAKHGAK-HVIGVDMSSIIEMA--KELVELNG---FSD 87
Query: 190 RVRIVEADAREGYLPEAPYDVI 211
++ ++ + +LP D+I
Sbjct: 88 KITLLRGKLEDVHLPFPKVDII 109
Score = 28.1 bits (62), Expect = 7.5
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 444 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANE 503
+L + VL++G G+G L+ + A G HV G++ M I + + N +
Sbjct: 35 DLFKDKIVLDVGCGTGILS-MFAAKHGAK-HVIGVD-MSSIIEMAKELVELNGFS----D 87
Query: 504 TIEIIR 509
I ++R
Sbjct: 88 KITLLR 93
>3giw_A Protein of unknown function DUF574; rossmann-fold protein,
structural genomics, joint center for structural
genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces
avermitilis} PDB: 3go4_A*
Length = 277
Score = 31.0 bits (70), Expect = 0.70
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 138 LDLGSGSGYQTCV--FAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE 195
LD+G+G + A V P +V+ V++ P ++ S + + GR VE
Sbjct: 83 LDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLS-QGLLAST----PEGRTAYVE 137
Query: 196 ADARE 200
AD +
Sbjct: 138 ADMLD 142
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine,
methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A
{Escherichia coli}
Length = 369
Score = 30.7 bits (70), Expect = 1.2
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 6/56 (10%)
Query: 123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNI 178
A + K +L+L G+G + A +V+ E + A+ NI
Sbjct: 206 ALDVTKG---SKGDLLELYCGNGNFSLALARNFD---RVLATEIAKPSVAAAQYNI 255
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase,
SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus
delbrueckii subsp}
Length = 205
Score = 30.2 bits (69), Expect = 1.2
Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 15/90 (16%)
Query: 125 ENLKLHLVDGAKVLDLGSGSGYQTCV---FAHMVGPTGKVIGVEHIPELIEASLRNISKG 181
++ +V V D+G+GSG + AH +G V+ + E + A+ N +
Sbjct: 52 LGIERAMVKPLTVADVGTGSG----ILAIAAHKLGA-KSVLATDISDESMTAAEENAAL- 105
Query: 182 NKDLLDSGRVRIVEADAREGYLPEAPYDVI 211
N + + + + +D+I
Sbjct: 106 N----GIYDIALQKTSLLAD--VDGKFDLI 129
Score = 29.9 bits (68), Expect = 1.5
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDI---AIE-SIANISTNHID 424
+ + V ++G+GSG LA + AH +G V DI ++ + N + N I
Sbjct: 57 AMVKPLTVADVGTGSGILA-IAAHKLGA-KSVLA----TDISDESMTAAEENAALNGIY 109
Score = 29.9 bits (68), Expect = 1.5
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 444 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDI---AIE-SIANISTNHID 498
+ + V ++G+GSG LA + AH +G V DI ++ + N + N I
Sbjct: 57 AMVKPLTVADVGTGSGILA-IAAHKLGA-KSVLA----TDISDESMTAAEENAALNGIY 109
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA
methyltransferase, translation, cytoplasm, rRNA
processing; HET: HIC SAM AMP; 1.50A {Thermus
thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Length = 249
Score = 29.7 bits (67), Expect = 1.8
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 15/68 (22%)
Query: 422 HIDLIANETIE--IIPHILD----LCYLNLHRGAKVLEIGSGSGY----LATLMAHLVGP 471
++L A E ++ H LD L +VL++G+G+G+ L +V P
Sbjct: 49 KVNLTALRGEEEVVVKHFLDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLK-----IVRP 103
Query: 472 TGHVTGLE 479
+ ++
Sbjct: 104 ELELVLVD 111
Score = 28.2 bits (63), Expect = 5.4
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 13/52 (25%)
Query: 362 HILD----LCYLNLHRGAKVLEIGSGSGY----LATLMAHLVGPTGHVTGLE 405
H LD L +VL++G+G+G+ L +V P + ++
Sbjct: 65 HFLDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLK-----IVRPELELVLVD 111
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock
proteins, 23S ribosomal RNA; HET: SAM; 1.50A
{Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Length = 180
Score = 29.0 bits (66), Expect = 2.2
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 134 GAKVLDLGS--GSGYQTCVFAHMVGPTGKVIGV 164
G V+DLG+ G Q +G G++I
Sbjct: 23 GMTVVDLGAAPGGWSQ--YVVTQIGGKGRIIAC 53
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding,
tRNA methyltransferase, S-adenosyl-L-methionine, iron,
4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi}
PDB: 2vs1_A*
Length = 425
Score = 29.8 bits (68), Expect = 2.5
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 123 AAENL---KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
A NL LV+G K+LD+ SG G A V G + IE + RN
Sbjct: 277 QAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKRGF---NVKGFDSNEFAIEMARRN 331
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative,
structural genomics, methyltransferase fold, PSI; 1.60A
{Bacillus subtilis} SCOP: c.66.1.20
Length = 240
Score = 29.2 bits (66), Expect = 2.6
Identities = 11/61 (18%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 425 LIANETIE--IIPHILD----LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 478
L + + + H D Y++ ++ + ++G+G+G+ + + + P HVT +
Sbjct: 42 LTSITEKKEVYLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIK-ICFPHLHVTIV 100
Query: 479 E 479
+
Sbjct: 101 D 101
Score = 29.2 bits (66), Expect = 2.8
Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 362 HILD----LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE 405
H D Y++ ++ + ++G+G+G+ + + + P HVT ++
Sbjct: 55 HFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIK-ICFPHLHVTIVD 101
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin,
halogenase, biosynthetic protein; HET: DSU AKG; 1.60A
{Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A*
2fcv_A*
Length = 313
Score = 29.3 bits (65), Expect = 3.0
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 342 GRLVHGSAPDNGPSSERSIAHIL 364
L+H S P +G S E +
Sbjct: 234 STLMHASYPHSGESQEMRMGFAS 256
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 28.9 bits (64), Expect = 3.0
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 377 VLEIGSGSGYLATLMAH------LVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANET 430
VL++G+G G +A +V + +E + A A ++ + T
Sbjct: 31 VLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYL-WAT 89
Query: 431 IEIIPHILDLCYLN 444
E +P + + L+
Sbjct: 90 AERLPPLSGVGELH 103
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP
binding, binding, capsid protein; HET: GTA SAH; 1.45A
{Yellow fever virus} PDB: 3evb_A* 3evc_A* 3evd_A*
3eve_A* 3eva_A*
Length = 277
Score = 29.2 bits (65), Expect = 3.1
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 126 NLKLHLVDGAKVLDLGSGSG---YQTCVFAHMVGPTGKVIGV 164
+ + ++ +V+DLG G G Y + G G +G
Sbjct: 67 HERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGR 108
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification,
iron-sulfur cluster, RNA processing; 1.95A {Escherichia
coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Length = 433
Score = 29.4 bits (67), Expect = 3.3
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
L + +VLDL G G T A V+GVE +P L+E +N
Sbjct: 282 LDVQPEDRVLDLFCGMGNFTLPLATQAA---SVVGVEGVPALVEKGQQN 327
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A
{Burkholderia pseudomallei} PDB: 2x3y_A
Length = 198
Score = 28.4 bits (64), Expect = 4.0
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 407 MMDIAIESIANISTNHIDLIAN-----ETIEIIPHILDLCYLNLHRGAKVLEIGSG 457
M + + I N ++A + + + D C ++ +G KVL G+G
Sbjct: 2 MENRELTYITNSIAEAQRVMAAMLADERLLATVRKVADACIASIAQGGKVLLAGNG 57
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 28.4 bits (63), Expect = 4.4
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 250 IDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQMDPVD-----ENLFTLMDKDSD 301
D + T+ K ++ E+ AI + D+ D E ++ K+ D
Sbjct: 116 YDVDGNGTISKNEVLEI-VMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDD 171
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet;
adenosine dimethyltransferase, rRNA modification,
transferase, translation; 2.10A {Escherichia coli} SCOP:
c.66.1.24 PDB: 4adv_V 3tpz_A
Length = 252
Score = 28.6 bits (65), Expect = 4.5
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 15/84 (17%)
Query: 115 NAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEAS 174
+ I A K G ++++G G T + ++ +E +L
Sbjct: 8 FVIDSIVSAINPQK-----GQAMVEIGPGLAALT---EPVGERLDQLTVIELDRDLAAR- 58
Query: 175 LRNISKGNKDLLDSGRVRIVEADA 198
L+ ++ I + DA
Sbjct: 59 LQTH------PFLGPKLTIYQQDA 76
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog,
methyltransferase, structural genomics, NPPSFA; HET:
SFG; 2.55A {Pyrococcus horikoshii}
Length = 450
Score = 28.4 bits (64), Expect = 5.9
Identities = 25/157 (15%), Positives = 55/157 (35%), Gaps = 34/157 (21%)
Query: 67 DLVNHLRDIGKIRTER---VAQAFYKVDRGNFANEEPY-------QDVSASLGYAGVMNA 116
+++ L + G + R V NF + Q+ ++++
Sbjct: 200 EVIGELEEDG-VEVVRSERVPTILKIKGPYNFDTSSAFNEGKIIVQEEASAV-------- 250
Query: 117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLR 176
A+ L G V+DL + G +T A ++ GK+ ++ + ++
Sbjct: 251 ------ASIVLDPK--PGETVVDLAAAPGGKTTHLAELMKNKGKIYAF----DVDKMRMK 298
Query: 177 NISKGNKDLLDSGRVRIVEADARE--GYLPEAPYDVI 211
+ K + V+ + DAR+ + E D +
Sbjct: 299 RL-KDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKV 334
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces
cerevisiae}
Length = 1219
Score = 28.7 bits (64), Expect = 5.9
Identities = 8/30 (26%), Positives = 9/30 (30%)
Query: 138 LDLGSGSGYQTCVFAHMVGPTGKVIGVEHI 167
L G G + A V G I I
Sbjct: 521 LTCGQGRFGADAIIAVYVNRKGDFIRDYKI 550
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces
cerevisiae}
Length = 1030
Score = 28.3 bits (63), Expect = 6.8
Identities = 8/30 (26%), Positives = 9/30 (30%)
Query: 138 LDLGSGSGYQTCVFAHMVGPTGKVIGVEHI 167
L G G + A V G I I
Sbjct: 524 LTCGQGRFGADAIIAVYVNRKGDFIRDYKI 553
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 27.9 bits (62), Expect = 6.8
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 251 DRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQMDPVDENLFTLMDKDSD 301
D D TL + DL + + + + + +M + +N+ D D D
Sbjct: 139 DFDDDGTLNREDLSRL-VNCLTGEGEDTRLSASEMKQLIDNILEESDIDRD 188
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target
base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET:
5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27
d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A*
2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Length = 421
Score = 28.1 bits (62), Expect = 7.1
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 432 EIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE 479
E++ ++ L RG +VLE G G G+E
Sbjct: 26 EVVDFMVSL--AEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVE 71
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific;
structural genomics, PSI-biology; 2.55A
{Alicyclobacillus acidocaldarius subsp}
Length = 215
Score = 27.9 bits (63), Expect = 7.2
Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 17/85 (20%)
Query: 134 GAKVLDLGSGSGYQTCV---FAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGR 190
G +V+D+G+GSG C+ A P V V+ + + +++ N +
Sbjct: 31 GTRVIDVGTGSG---CIAVSIALAC-PGVSVTAVDLSMDALA-----VARRNAERFG-AV 80
Query: 191 VRIVEADAREGYLPEA----PYDVI 211
V AD E + A P+ I
Sbjct: 81 VDWAAADGIEWLIERAERGRPWHAI 105
Score = 27.5 bits (62), Expect = 8.4
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 429 ETIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLA-TLMAHLVGPTGHVTGLEHMMDIAIE 487
+T ++ + + G +V+++G+GSG +A ++ P VT + D++++
Sbjct: 13 DTEVLVEEAIR-FLKRMPSGTRVIDVGTGSGCIAVSIALAC--PGVSVTAV----DLSMD 65
Query: 488 SIA 490
++A
Sbjct: 66 ALA 68
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle
structural genomics center for infectio disease; 1.75A
{Burkholderia pseudomallei}
Length = 279
Score = 27.9 bits (63), Expect = 7.4
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 433 IIPHILDLCYLNLHRGAKVLEIGSGSGYL-ATLMAHLVGPTGHVTGLE 479
+I I+ + RG +++EIG G G L ++A L P + +E
Sbjct: 30 VIDAIVAA--IRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVE 75
>2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR
{Saccharomyces cerevisiae}
Length = 136
Score = 26.9 bits (59), Expect = 8.0
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 10/74 (13%)
Query: 168 PELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYY----GGCVSEVPSR 223
PEL+E + + +D + + + L A Y+ ++Y + P +
Sbjct: 22 PELVENTKAQAASKKVKFVDQFLINKLNDGSIT--LENAKYETVHYLTPEAQTDIKFPKK 79
Query: 224 VLNQ----LKKGGR 233
+++ LK G
Sbjct: 80 LISVLADSLKPNGS 93
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A
{Escherichia coli} PDB: 2i22_A 1x94_A
Length = 212
Score = 27.7 bits (62), Expect = 8.0
Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 10/71 (14%)
Query: 405 EHMMDIAIESIANISTNHIDLIAN-----ETIEIIPHILDLCYLNLHRGAKVLEIGSGSG 459
HM + I N + +AN I I L + G KVL G+G
Sbjct: 19 SHMYQ---DLIRNELNEAAETLANFLKDDANIHAIQRAAVLLADSFKAGGKVLSCGNGGS 75
Query: 460 YLATLMAHLVG 470
H
Sbjct: 76 --HCDAMHFAE 84
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A
{Francisella tularensis subsp}
Length = 201
Score = 27.3 bits (61), Expect = 8.8
Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Query: 406 HMMDIAIESIANISTNHIDL---IANETIEIIPHILDLCYLNLHRGAKVLEIGSG-SGYL 461
+ M ++ I + + I AN I L G KVL G+G SG +
Sbjct: 2 NAMTS-LDKINSYFESSIQAKIETANALPPAIAQAAKAMVSCLENGGKVLVCGNGSSGVI 60
Query: 462 ATLMA-HLVGP 471
A L+
Sbjct: 61 AQHFTSKLLNH 71
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.407
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,139,779
Number of extensions: 524976
Number of successful extensions: 1791
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1682
Number of HSP's successfully gapped: 471
Length of query: 511
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 413
Effective length of database: 3,965,535
Effective search space: 1637765955
Effective search space used: 1637765955
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.0 bits)