BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7830
(364 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S-
Adenosyl Homocysteine
pdb|1KR5|A Chain A, Crystal Structure Of Human L-Isoaspartyl Methyltransferase
Length = 226
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 103/206 (50%), Gaps = 9/206 (4%)
Query: 62 SYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYI 121
S+++ + L++ ++ +V E A R+ + P + D P + Q + P
Sbjct: 8 SHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNP---YMDSPQSIGFQATISAPHMH 64
Query: 122 ARCLEQLVDHLQNGSRVLDIGSGQGYM-ATAKEWLSSVRQLL----LPETLNNSLKNIKI 176
A LE L D L G++ LD+GSG G + A + +++ + E +++S+ N++
Sbjct: 65 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRK 124
Query: 177 SRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGN 236
P LL S ++ ++ D R G+AE PYD I GA V + ++ QLKP GR++ PVG
Sbjct: 125 DDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGP 184
Query: 237 V-WRQNLSVIDKGPDGSISSKILRRV 261
Q L DK DGSI K L V
Sbjct: 185 AGGNQMLEQYDKLQDGSIKMKPLMGV 210
>pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With
S-Adenosyl-L- Homocysteine
Length = 227
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 88/200 (44%), Gaps = 14/200 (7%)
Query: 65 DFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARC 124
D + LK+ ++ V +A R + P+ + D P V + P A
Sbjct: 18 DLIRQLKDHGVIASDAVAQAMKETDRKHY---SPRNPYMDAPQPIGGGVTISAPHMHAFA 74
Query: 125 LEQLVDHLQNGSRVLDIGSGQGYMAT-------AKEWLSSVRQLLL---PETLNNSLKNI 174
LE L DHL+ G+R+LD+GSG GY+ AK + R + + E + S N+
Sbjct: 75 LEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANL 134
Query: 175 KISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPV 234
+L S L + D R G+ PY+ I GA + +++QL GR++ PV
Sbjct: 135 NTDDRSMLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPV 194
Query: 235 G-NVWRQNLSVIDKGPDGSI 253
G + Q + DK +G +
Sbjct: 195 GPDGGSQYMQQYDKDANGKV 214
>pdb|2PBF|A Chain A, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
pdb|2PBF|B Chain B, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
Length = 227
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 96/199 (48%), Gaps = 16/199 (8%)
Query: 62 SYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYI 121
++ LE LK R +++ V V R +I P + D P ++ V + P
Sbjct: 11 NHKSLLENLKRRGIIDDDDVYNTMLQVDRGKYIKEIP---YIDTPVYISHGVTISAPHMH 67
Query: 122 ARCLEQLVDHLQNGSRVLDIGSGQGY----MATAKEWLSSVRQLLL-----PETLNNSLK 172
A L++L++ L+ GSR +D+GSG GY MA L + ++ + +N SL+
Sbjct: 68 ALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLE 127
Query: 173 NIKISRPDLLQSKTLEFILKDARWGHAEG----GPYDVIFFGAGTTEVSKTILSQLKPNG 228
NIK +P+LL+ + I K+ + E G +D I GA +E+ + ++ L NG
Sbjct: 128 NIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASELPEILVDLLAENG 187
Query: 229 RIVAPVGNVWRQNLSVIDK 247
+++ P+ + Q L I K
Sbjct: 188 KLIIPIEEDYTQVLYEITK 206
>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase
pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransferase
Length = 317
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 2/117 (1%)
Query: 118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNNSLKNIKIS 177
PS +A +E + L G RVL+IG G GY A + + L++ + + I
Sbjct: 61 PSLMALFMEWV--GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR 118
Query: 178 RPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPV 234
+ L + + F+ D +G E PYDVIF G EV +T +QLK GR++ P+
Sbjct: 119 NVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPI 175
>pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosylmethionine
pdb|1JG3|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG3|B Chain B, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG2|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With Adenosine
pdb|1JG1|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosyl-L-Homocysteine
Length = 235
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 88/186 (47%), Gaps = 17/186 (9%)
Query: 67 LEGLKERKLLNHPRVEEAFYAVRRADFINVK-PKFGFCDIPYAFANQVVMEPPSYIARCL 125
+E LK ++ VE AF R + K K+ D P + P +A L
Sbjct: 25 VEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIML 84
Query: 126 EQLVDHLQNGSRVLDIGSGQGYMAT-----AKEWLSSVRQLLLPETLNNSLKNIKISRPD 180
E + +L+ G +L++G+G G+ A K + ++ ++ PE + + +N++ +
Sbjct: 85 E--IANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERI--PELVEFAKRNLERA--- 137
Query: 181 LLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVG--NVW 238
K + IL D G PYDVI AG ++ + ++ QLK G+++ PVG ++W
Sbjct: 138 --GVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYHLW 195
Query: 239 RQNLSV 244
++ L V
Sbjct: 196 QELLEV 201
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 14/191 (7%)
Query: 66 FLEGLKERKLLNHPRVEEAFYAVRRADFINVKPK-FGFCDIPYAFANQVVMEPPSYIARC 124
+E L + RV +A V R +F+ K + + D P + +
Sbjct: 10 VIEKLIREGYIKSKRVIDALLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIHMVGMM 69
Query: 125 LEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLL-----LPETLNNSLKNIKISRP 179
E L L+ G +VL+IG+G GY A + L+ +PE + + ++
Sbjct: 70 CELL--DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLR---- 123
Query: 180 DLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNVWR 239
L + I+ D G+ PYD I+ A ++ + ++ QLK G+++ PVG +
Sbjct: 124 -KLGYDNVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVGR-YL 181
Query: 240 QNLSVIDKGPD 250
Q L + +K D
Sbjct: 182 QRLVLAEKRGD 192
>pdb|3LBF|A Chain A, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|B Chain B, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|C Chain C, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|D Chain D, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
Length = 210
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 75/175 (42%), Gaps = 22/175 (12%)
Query: 68 EGLKERKLLNHPRVEEAFYAVRRADFINVK-PKFGFCDIPYAFANQVVMEPPSYIARCLE 126
+G+++ ++LN A AV R F++ + + +I + P +AR E
Sbjct: 18 QGIQDEQVLN------ALAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARMTE 71
Query: 127 QLVDHLQNGSRVLDIGSGQGY----MATAKEWLSSVRQLL-LPETLNNSLKNIKISRPDL 181
L L SRVL+IG+G GY +A + + SV ++ L LKN+ DL
Sbjct: 72 LL--ELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNL-----DL 124
Query: 182 LQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGN 236
T D G P+D I A E+ +++QL G +V PVG
Sbjct: 125 HNVSTRH---GDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGE 176
>pdb|1VBF|A Chain A, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|B Chain B, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|C Chain C, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|D Chain D, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
Length = 231
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 10/127 (7%)
Query: 132 LQNGSRVLDIGSGQGY-MATAKEWLSSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFI 190
L G +VL+IG+G GY A E + V + + E N + L ++ I
Sbjct: 68 LHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKXYNYASKL------LSYYNNIKLI 121
Query: 191 LKDARWGHAEGGPYD-VIFFGAGTTEVSKTILSQLKPNGRIVAPVGNVWRQNL-SVIDKG 248
L D G+ E PYD V+ + T + K QLK G + P+G Q L VI KG
Sbjct: 122 LGDGTLGYEEEKPYDRVVVWATAPTLLCKP-YEQLKEGGIXILPIGVGRVQKLYKVIKKG 180
Query: 249 PDGSISS 255
S+ +
Sbjct: 181 NSPSLEN 187
>pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|C Chain C, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|E Chain E, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|G Chain G, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|I Chain I, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|K Chain K, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|M Chain M, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|O Chain O, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
Length = 254
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 17/90 (18%)
Query: 124 CLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSS------VRQLLLPETLNNSLKNIKIS 177
L+ L HL+ G +VLD+G+G G +A A E L + ++LP+ N+ +N
Sbjct: 110 ALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRN--GV 167
Query: 178 RPDLLQSKTLEFILKDARWGHAEGGPYDVI 207
RP L+ +LE L GP+D++
Sbjct: 168 RPRFLEG-SLEAALPF--------GPFDLL 188
>pdb|1UFK|A Chain A, Crystal Structure Of Tt0836
pdb|2NXE|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXE|B Chain B, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXJ|A Chain A, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXJ|B Chain B, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXN|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With Ribosomal Protein L11
pdb|2NXC|A Chain A, Apo-Form Of T. Thermophilus Ribosomal Protein L11
Methyltransferase (Prma)
pdb|3CJQ|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|D Chain D, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|G Chain G, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJR|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Ribosomal Protein L11 (k39a) And Inhibitor
Sinefungin.
pdb|3EGV|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Trimethylated Ribosomal Protein L11
pdb|2ZBP|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Methionine
pdb|2ZBQ|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Homocysteine
pdb|2ZBR|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-adenosyl-ornithine
Length = 254
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 17/90 (18%)
Query: 124 CLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSS------VRQLLLPETLNNSLKNIKIS 177
L+ L HL+ G +VLD+G+G G +A A E L + ++LP+ N+ +N
Sbjct: 110 ALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRN--GV 167
Query: 178 RPDLLQSKTLEFILKDARWGHAEGGPYDVI 207
RP L+ +LE L GP+D++
Sbjct: 168 RPRFLEG-SLEAALPF--------GPFDLL 188
>pdb|3E9S|A Chain A, A New Class Of Papain-Like ProteaseDEUBIQUITINASE
Inhibitors Blocks Sars Virus Replication
Length = 318
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 76 LNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARCLEQLVDH--LQ 133
N P ++EA+Y R D N FC + A++N+ V E + + L+ H L+
Sbjct: 130 FNAPALQEAYYRARAGDAAN------FCALILAYSNKTVGELGD-VRETMTHLLQHANLE 182
Query: 134 NGSRVLDI 141
+ RVL++
Sbjct: 183 SAKRVLNV 190
>pdb|3MJ5|A Chain A, Severe Acute Respiratory Syndrome-Coronavirus Papain-Like
Protease Inhibitors: Design, Synthesis, Protein-Ligand
X-Ray Structure And Biological Evaluation
pdb|3MJ5|B Chain B, Severe Acute Respiratory Syndrome-Coronavirus Papain-Like
Protease Inhibitors: Design, Synthesis, Protein-Ligand
X-Ray Structure And Biological Evaluation
Length = 316
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 76 LNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARCLEQLVDH--LQ 133
N P ++EA+Y R D N FC + A++N+ V E + + L+ H L+
Sbjct: 128 FNAPALQEAYYRARAGDAAN------FCALILAYSNKTVGELGD-VRETMTHLLQHANLE 180
Query: 134 NGSRVLDI 141
+ RVL++
Sbjct: 181 SAKRVLNV 188
>pdb|2FE8|A Chain A, Sars Coronavirus Papain-Like Protease: Structure Of A
Viral Deubiquitinating Enzyme
pdb|2FE8|B Chain B, Sars Coronavirus Papain-Like Protease: Structure Of A
Viral Deubiquitinating Enzyme
pdb|2FE8|C Chain C, Sars Coronavirus Papain-Like Protease: Structure Of A
Viral Deubiquitinating Enzyme
Length = 315
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 76 LNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARCLEQLVDH--LQ 133
N P ++EA+Y R D N FC + A++N+ V E + + L+ H L+
Sbjct: 128 FNAPALQEAYYRARAGDAAN------FCALILAYSNKTVGELGD-VRETMTHLLQHANLE 180
Query: 134 NGSRVLDI 141
+ RVL++
Sbjct: 181 SAKRVLNV 188
>pdb|4AYN|A Chain A, Structure Of The C-Terminal Barrel Of Neisseria
Meningitidis Fhbp Variant 2
pdb|4AYN|B Chain B, Structure Of The C-Terminal Barrel Of Neisseria
Meningitidis Fhbp Variant 2
Length = 267
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 150 TAKEWLSSVRQLLLPETLNNSLKNIKISRPDL-LQSKTLEFILKDARWGHAEGGPYDVIF 208
T K+ + L PE +N++++ +L K+ IL D R+G E G Y +
Sbjct: 177 TKKQGYGRIEHLKTPE------QNVELASAELKADEKSHAVILGDTRYGSEEKGTYHLAL 230
Query: 209 FGAGTTEVSKTILSQLKPNGRIVAPVGNVWRQ 240
FG E++ + +++ V +G +Q
Sbjct: 231 FGDRAQEIAGSATVKIREK---VHEIGIAGKQ 259
>pdb|2Y7S|A Chain A, Structure Of A Designed Meningococcal Antigen (Factor H
Binding Protein, Mutant G1) Inducing Broad Protective
Immunity
pdb|2Y7S|B Chain B, Structure Of A Designed Meningococcal Antigen (Factor H
Binding Protein, Mutant G1) Inducing Broad Protective
Immunity
Length = 256
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 150 TAKEWLSSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF 209
T K+ + L PE LN L + +I + D K+ IL D R+G E G Y + F
Sbjct: 166 TKKQGNGKIEHLKSPE-LNVELASAEI-KAD---GKSHAVILGDVRYGSEEKGSYSLGIF 220
Query: 210 GAGTTEVS 217
G EV+
Sbjct: 221 GGRAQEVA 228
>pdb|4AYI|D Chain D, Structure Of A Complex Between Ccps 6 And 7 Of Human
Complement Factor H And Neisseria Meningitidis Fhbp
Variant 3 Wild Type
Length = 270
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 165 ETLNNSLKNIKISRPDL-LQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQ 223
E L +N++++ +L K+ IL D R+G E G Y + FG E++ + +
Sbjct: 189 EHLKTLEQNVELAAAELKADEKSHAVILGDTRYGSEEKGTYHLALFGDRAQEIAGSATVK 248
Query: 224 LKPNGRIVAPVGNVWRQ 240
+ G V +G +Q
Sbjct: 249 I---GEKVHEIGIAGKQ 262
>pdb|4AYM|C Chain C, Structure Of A Complex Between Ccps 6 And 7 Of Human
Complement Factor H And Neisseria Meningitidis Fhbp
Variant 3 P106a Mutant
pdb|4AYM|D Chain D, Structure Of A Complex Between Ccps 6 And 7 Of Human
Complement Factor H And Neisseria Meningitidis Fhbp
Variant 3 P106a Mutant
Length = 270
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 165 ETLNNSLKNIKISRPDL-LQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQ 223
E L +N++++ +L K+ IL D R+G E G Y + FG E++ + +
Sbjct: 189 EHLKTLEQNVELAAAELKADEKSHAVILGDTRYGSEEKGTYHLALFGDRAQEIAGSATVK 248
Query: 224 LKPNGRIVAPVGNVWRQ 240
+ G V +G +Q
Sbjct: 249 I---GEKVHEIGIAGKQ 262
>pdb|3UKL|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
Length = 510
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 82 EEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARCLEQLVD 130
E+ +Y +R ++ + ++ +PY F N + M P +C++ ++D
Sbjct: 82 EDDWYTHQRISYVRCQGQW----VPYPFQNNISMLPKEEQVKCIDGMID 126
>pdb|3UKH|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
Length = 519
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 82 EEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARCLEQLVD 130
E+ +Y +R ++ + ++ +PY F N + M P +C++ ++D
Sbjct: 82 EDDWYTHQRISYVRCQGQW----VPYPFQNNISMLPKEEQVKCIDGMID 126
>pdb|3UKQ|A Chain A, Crystal Structure Of R327k Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKQ|B Chain B, Crystal Structure Of R327k Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKQ|C Chain C, Crystal Structure Of R327k Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKQ|D Chain D, Crystal Structure Of R327k Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
Length = 510
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 82 EEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARCLEQLVD 130
E+ +Y +R ++ + ++ +PY F N + M P +C++ ++D
Sbjct: 82 EDDWYTHQRISYVRCQGQW----VPYPFQNNISMLPKEEQVKCIDGMID 126
>pdb|3UKP|A Chain A, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|B Chain B, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|C Chain C, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|D Chain D, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|E Chain E, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|F Chain F, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|G Chain G, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|H Chain H, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
Length = 509
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 82 EEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARCLEQLVD 130
E+ +Y +R ++ + ++ +PY F N + M P +C++ ++D
Sbjct: 82 EDDWYTHQRISYVRCQGQW----VPYPFQNNISMLPKEEQVKCIDGMID 126
>pdb|3UKK|A Chain A, Crystal Structure Of R182k-Udp-Galactopuranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKK|B Chain B, Crystal Structure Of R182k-Udp-Galactopuranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKK|C Chain C, Crystal Structure Of R182k-Udp-Galactopuranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKK|D Chain D, Crystal Structure Of R182k-Udp-Galactopuranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
Length = 517
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 82 EEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARCLEQLVD 130
E+ +Y +R ++ + ++ +PY F N + M P +C++ ++D
Sbjct: 82 EDDWYTHQRISYVRCQGQW----VPYPFQNNISMLPKEEQVKCIDGMID 126
>pdb|3UTE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTE|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTE|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTF|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTF|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTG|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTG|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTG|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTG|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTH|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate Udp-Galp
In Reduced State
pdb|3UTH|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate Udp-Galp
In Reduced State
pdb|3UTH|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate Udp-Galp
In Reduced State
pdb|3UTH|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate Udp-Galp
In Reduced State
pdb|4GDC|A Chain A, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDC|B Chain B, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDC|C Chain C, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDC|D Chain D, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDD|A Chain A, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDD|B Chain B, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDD|C Chain C, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDD|D Chain D, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDE|A Chain A, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
pdb|4GDE|B Chain B, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
pdb|4GDE|C Chain C, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
pdb|4GDE|D Chain D, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
Length = 513
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 82 EEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARCLEQLVD 130
E+ +Y +R ++ + ++ +PY F N + M P +C++ ++D
Sbjct: 86 EDDWYTHQRISYVRCQGQW----VPYPFQNNISMLPKEEQVKCIDGMID 130
>pdb|2L3Y|A Chain A, Solution Structure Of Mouse Il-6
Length = 190
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 114 VMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNNSLKN 173
++E SY+ L D+ ++ +RVL + + + + + + +++LP ++N+L
Sbjct: 96 LLEYHSYLEYMKNNLKDNKKDKARVLQRDT-ETLIHIFNQEVKDLHKIVLPTPISNALLT 154
Query: 174 IKI-SRPDLLQSKTLEFILK 192
K+ S+ + L++KT++FILK
Sbjct: 155 DKLESQKEWLRTKTIQFILK 174
>pdb|1G8S|A Chain A, Methanococcus Jannaschii Fibrillarin Pre-Rrna Processing
Protein
Length = 230
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 164 PETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSK 218
P+ N ++ + + D+ Q E ++K+A+W +GG Y +I A + +V+K
Sbjct: 134 PQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGG-YGMIAIKARSIDVTK 187
>pdb|1FBN|A Chain A, Crystal Structure Of A Fibrillarin Homologue From
Methanococcus Jannaschii, A Hyperthermophile, At 1.6 A
Length = 230
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 164 PETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSK 218
P+ N ++ + + D+ Q E ++K+A+W +GG Y I A + +V+K
Sbjct: 134 PQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGG-YGXIAIKARSIDVTK 187
>pdb|4A18|J Chain J, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 1
pdb|4A1B|J Chain J, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 3.
pdb|4A1D|J Chain J, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 4.
pdb|4A19|J Chain J, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 2
Length = 248
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Query: 89 RRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYM 148
RR F N FC + A+ V ++ + +LV H+ V+ G G
Sbjct: 6 RRCQFENSNDIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIP----VIHTSIG-GTR 60
Query: 149 ATAKEWLSSVRQLLLPETLN-NSLKNIKISRPDLLQSKTLE 188
+ + LL+P T N N L+NI+ S PD ++ + +E
Sbjct: 61 IVGRVTCGNKNGLLVPNTCNDNELRNIRNSLPDNVRVRRIE 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,684,141
Number of Sequences: 62578
Number of extensions: 437640
Number of successful extensions: 1058
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1041
Number of HSP's gapped (non-prelim): 30
length of query: 364
length of database: 14,973,337
effective HSP length: 100
effective length of query: 264
effective length of database: 8,715,537
effective search space: 2300901768
effective search space used: 2300901768
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)