Query psy7830
Match_columns 364
No_of_seqs 590 out of 3129
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 19:58:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7830.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7830hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01135 PCMT: Protein-L-isoas 100.0 3.6E-34 7.9E-39 259.2 19.3 201 62-269 1-207 (209)
2 COG2518 Pcm Protein-L-isoaspar 100.0 6.1E-34 1.3E-38 253.6 20.4 198 64-269 4-204 (209)
3 PRK13942 protein-L-isoaspartat 100.0 6.7E-30 1.5E-34 232.8 23.3 200 62-270 5-210 (212)
4 PRK13944 protein-L-isoaspartat 100.0 4.3E-29 9.4E-34 226.3 23.0 198 63-267 2-205 (205)
5 TIGR00080 pimt protein-L-isoas 100.0 7.9E-29 1.7E-33 226.2 23.4 203 60-271 4-212 (215)
6 KOG1661|consensus 100.0 8.1E-28 1.7E-32 211.4 17.2 216 60-275 7-235 (237)
7 PRK00312 pcm protein-L-isoaspa 100.0 3.9E-26 8.4E-31 207.9 23.8 201 60-269 6-209 (212)
8 COG2264 PrmA Ribosomal protein 99.9 5.9E-27 1.3E-31 220.0 12.8 217 11-236 25-265 (300)
9 PF06325 PrmA: Ribosomal prote 99.9 8.2E-25 1.8E-29 207.3 8.3 212 13-236 25-261 (295)
10 PRK13943 protein-L-isoaspartat 99.9 5.5E-22 1.2E-26 190.7 22.6 197 63-269 7-216 (322)
11 TIGR00406 prmA ribosomal prote 99.9 8E-21 1.7E-25 180.9 14.3 209 12-236 23-261 (288)
12 PRK00517 prmA ribosomal protei 99.7 9.4E-17 2E-21 149.9 12.0 144 76-235 51-214 (250)
13 COG2226 UbiE Methylase involve 99.6 1E-15 2.3E-20 140.6 12.1 101 132-237 49-159 (238)
14 PF12847 Methyltransf_18: Meth 99.6 3E-15 6.5E-20 121.7 11.9 96 134-234 1-111 (112)
15 PF01209 Ubie_methyltran: ubiE 99.6 2.3E-15 4.9E-20 139.0 11.9 107 123-236 38-155 (233)
16 PRK10258 biotin biosynthesis p 99.6 5E-16 1.1E-20 144.8 6.5 189 120-333 30-232 (251)
17 PRK14903 16S rRNA methyltransf 99.6 3.6E-15 7.7E-20 149.5 10.0 178 45-237 157-369 (431)
18 PRK00107 gidB 16S rRNA methylt 99.6 8.5E-15 1.8E-19 130.7 11.3 111 132-248 43-159 (187)
19 COG2242 CobL Precorrin-6B meth 99.6 5.1E-14 1.1E-18 123.5 14.6 119 112-237 14-138 (187)
20 TIGR00446 nop2p NOL1/NOP2/sun 99.6 5.6E-15 1.2E-19 139.0 9.0 167 55-237 2-202 (264)
21 PF13847 Methyltransf_31: Meth 99.6 5.2E-14 1.1E-18 121.3 12.4 98 133-236 2-112 (152)
22 TIGR02469 CbiT precorrin-6Y C5 99.5 1.3E-13 2.8E-18 113.6 14.2 111 118-235 5-123 (124)
23 PLN02233 ubiquinone biosynthes 99.5 7.2E-14 1.6E-18 131.3 14.2 103 132-237 71-185 (261)
24 PLN02244 tocopherol O-methyltr 99.5 7.2E-14 1.6E-18 136.2 14.4 111 119-235 100-224 (340)
25 PRK14901 16S rRNA methyltransf 99.5 1.3E-14 2.8E-19 145.8 9.3 186 34-236 148-386 (434)
26 PF08241 Methyltransf_11: Meth 99.5 3.6E-14 7.8E-19 111.0 9.7 86 139-232 1-95 (95)
27 PF05175 MTS: Methyltransferas 99.5 9.8E-14 2.1E-18 122.1 13.0 110 120-237 19-143 (170)
28 TIGR02752 MenG_heptapren 2-hep 99.5 1.5E-13 3.2E-18 126.4 13.6 108 122-236 35-153 (231)
29 PRK10901 16S rRNA methyltransf 99.5 3.8E-14 8.3E-19 142.1 10.3 175 42-236 162-374 (427)
30 PRK08287 cobalt-precorrin-6Y C 99.5 3.2E-13 7E-18 120.4 14.8 114 112-234 11-131 (187)
31 TIGR00138 gidB 16S rRNA methyl 99.5 1.3E-13 2.8E-18 122.6 11.9 99 134-238 42-146 (181)
32 COG2230 Cfa Cyclopropane fatty 99.5 1.1E-13 2.4E-18 129.6 11.6 131 120-265 60-202 (283)
33 PRK11207 tellurite resistance 99.5 2.4E-13 5.2E-18 122.5 13.2 103 123-233 21-133 (197)
34 PTZ00098 phosphoethanolamine N 99.5 2.1E-13 4.6E-18 128.3 13.3 108 120-236 40-158 (263)
35 COG2227 UbiG 2-polyprenyl-3-me 99.5 3.4E-14 7.4E-19 128.9 7.5 100 133-238 58-165 (243)
36 PRK14902 16S rRNA methyltransf 99.5 6.6E-14 1.4E-18 141.2 9.9 174 46-236 173-381 (444)
37 PLN02396 hexaprenyldihydroxybe 99.5 1.8E-13 4E-18 131.8 12.5 102 133-238 130-239 (322)
38 PRK14103 trans-aconitate 2-met 99.5 1.4E-13 3E-18 128.8 11.3 101 121-236 18-128 (255)
39 TIGR00563 rsmB ribosomal RNA s 99.5 7E-14 1.5E-18 140.3 9.6 178 42-237 156-371 (426)
40 PRK14904 16S rRNA methyltransf 99.5 1.3E-13 2.8E-18 139.0 10.5 185 34-237 150-380 (445)
41 PRK01683 trans-aconitate 2-met 99.5 4E-13 8.8E-18 125.7 12.2 104 120-236 19-132 (258)
42 PRK11036 putative S-adenosyl-L 99.5 5.4E-13 1.2E-17 124.9 13.0 101 133-237 43-152 (255)
43 TIGR03533 L3_gln_methyl protei 99.5 1E-12 2.3E-17 124.9 14.5 132 101-237 86-254 (284)
44 COG4106 Tam Trans-aconitate me 99.5 1.6E-13 3.4E-18 122.1 8.1 96 132-238 28-133 (257)
45 PRK15451 tRNA cmo(5)U34 methyl 99.5 8E-13 1.7E-17 123.2 13.4 109 120-234 42-164 (247)
46 PRK00377 cbiT cobalt-precorrin 99.5 8.9E-13 1.9E-17 118.8 12.9 117 114-236 22-147 (198)
47 PF02353 CMAS: Mycolic acid cy 99.5 4.8E-13 1E-17 126.3 11.6 107 120-235 50-167 (273)
48 TIGR00477 tehB tellurite resis 99.5 7.4E-13 1.6E-17 119.1 12.3 103 122-233 20-132 (195)
49 PRK07402 precorrin-6B methylas 99.4 1.6E-12 3.5E-17 116.9 14.0 119 112-237 20-145 (196)
50 PRK11873 arsM arsenite S-adeno 99.4 9.5E-13 2.1E-17 124.2 13.0 98 132-234 75-183 (272)
51 TIGR01177 conserved hypothetic 99.4 2.1E-12 4.5E-17 125.4 14.6 116 115-237 165-297 (329)
52 PRK00121 trmB tRNA (guanine-N( 99.4 1.1E-12 2.5E-17 118.6 10.7 101 133-238 39-160 (202)
53 PRK11805 N5-glutamine S-adenos 99.4 2.9E-12 6.2E-17 123.1 14.0 132 101-237 98-266 (307)
54 PLN02336 phosphoethanolamine N 99.4 1.9E-12 4.2E-17 131.6 13.5 109 120-236 254-371 (475)
55 PRK14966 unknown domain/N5-glu 99.4 3.6E-12 7.8E-17 125.6 14.8 140 92-238 207-385 (423)
56 PRK15001 SAM-dependent 23S rib 99.4 2.5E-12 5.5E-17 126.2 13.5 109 121-235 217-341 (378)
57 TIGR00537 hemK_rel_arch HemK-r 99.4 4.4E-12 9.5E-17 112.3 13.7 105 123-237 10-143 (179)
58 PF13659 Methyltransf_26: Meth 99.4 5.8E-13 1.2E-17 109.1 7.4 97 135-235 1-116 (117)
59 PRK15068 tRNA mo(5)U34 methylt 99.4 3.5E-12 7.6E-17 123.3 13.1 104 123-234 113-226 (322)
60 PRK12335 tellurite resistance 99.4 4.4E-12 9.5E-17 120.8 13.3 103 123-234 111-223 (287)
61 TIGR02072 BioC biotin biosynth 99.4 4.7E-12 1E-16 116.1 13.1 109 120-237 19-138 (240)
62 PRK04266 fibrillarin; Provisio 99.4 4.8E-12 1E-16 116.3 13.0 109 118-235 55-177 (226)
63 TIGR00740 methyltransferase, p 99.4 6.4E-12 1.4E-16 116.4 13.9 98 132-235 51-162 (239)
64 TIGR03534 RF_mod_PrmC protein- 99.4 7.6E-12 1.6E-16 116.1 14.0 99 133-237 86-220 (251)
65 KOG1270|consensus 99.4 1.2E-12 2.7E-17 119.7 8.4 98 135-238 90-199 (282)
66 PRK14967 putative methyltransf 99.4 1.1E-11 2.5E-16 113.7 14.8 98 132-236 34-161 (223)
67 PRK11088 rrmA 23S rRNA methylt 99.4 4.8E-12 1E-16 119.6 12.4 94 133-237 84-184 (272)
68 PRK11933 yebU rRNA (cytosine-C 99.4 1.1E-12 2.4E-17 132.1 8.0 178 42-237 25-245 (470)
69 TIGR03704 PrmC_rel_meth putati 99.4 1E-11 2.2E-16 116.1 13.8 129 101-238 51-220 (251)
70 TIGR00091 tRNA (guanine-N(7)-) 99.4 4.2E-12 9.1E-17 114.1 10.8 101 133-238 15-136 (194)
71 TIGR00452 methyltransferase, p 99.4 7.8E-12 1.7E-16 120.1 12.9 98 132-234 119-225 (314)
72 PRK08317 hypothetical protein; 99.4 1.4E-11 2.9E-16 112.9 14.0 107 122-236 9-126 (241)
73 PRK09489 rsmC 16S ribosomal RN 99.4 1E-11 2.2E-16 120.9 13.8 106 121-236 185-305 (342)
74 COG0144 Sun tRNA and rRNA cyto 99.4 2.7E-12 5.9E-17 125.6 9.7 188 34-237 53-291 (355)
75 PRK11705 cyclopropane fatty ac 99.3 9.3E-12 2E-16 123.1 13.4 103 121-236 156-269 (383)
76 TIGR00536 hemK_fam HemK family 99.3 1.4E-11 3.1E-16 117.1 13.8 133 101-238 79-248 (284)
77 PF13649 Methyltransf_25: Meth 99.3 2.3E-12 5E-17 103.2 6.7 85 138-228 1-101 (101)
78 COG2813 RsmC 16S RNA G1207 met 99.3 1E-11 2.3E-16 116.7 11.9 105 122-235 148-267 (300)
79 PF03848 TehB: Tellurite resis 99.3 1.6E-11 3.4E-16 109.6 12.5 104 122-234 20-133 (192)
80 PRK14968 putative methyltransf 99.3 3E-11 6.5E-16 107.0 14.1 109 122-236 13-150 (188)
81 COG2890 HemK Methylase of poly 99.3 1.9E-11 4.2E-16 115.8 13.6 130 101-238 77-242 (280)
82 PLN02490 MPBQ/MSBQ methyltrans 99.3 1.3E-11 2.9E-16 119.5 12.7 94 133-234 112-215 (340)
83 PF13489 Methyltransf_23: Meth 99.3 8.3E-12 1.8E-16 107.4 9.9 101 122-237 10-118 (161)
84 KOG1540|consensus 99.3 1.7E-11 3.8E-16 111.6 12.3 108 125-236 93-216 (296)
85 PLN02781 Probable caffeoyl-CoA 99.3 1E-11 2.2E-16 114.8 11.1 107 121-232 56-176 (234)
86 COG2519 GCD14 tRNA(1-methylade 99.3 1.6E-11 3.5E-16 112.4 12.1 119 112-238 74-199 (256)
87 PF05401 NodS: Nodulation prot 99.3 1.4E-11 3E-16 109.1 11.0 94 134-235 43-147 (201)
88 PRK01544 bifunctional N5-gluta 99.3 1.4E-11 3E-16 126.0 12.6 133 100-238 79-273 (506)
89 PRK09328 N5-glutamine S-adenos 99.3 4E-11 8.7E-16 113.0 14.4 129 102-237 75-241 (275)
90 COG4123 Predicted O-methyltran 99.3 2.4E-11 5.3E-16 112.0 11.8 111 123-238 34-174 (248)
91 PF08242 Methyltransf_12: Meth 99.3 8.4E-13 1.8E-17 105.2 1.7 87 139-230 1-99 (99)
92 smart00828 PKS_MT Methyltransf 99.3 2.5E-11 5.4E-16 111.1 11.3 95 136-235 1-105 (224)
93 smart00650 rADc Ribosomal RNA 99.3 4.6E-11 1E-15 104.9 12.1 105 122-235 3-114 (169)
94 TIGR03840 TMPT_Se_Te thiopurin 99.3 6.8E-11 1.5E-15 107.8 13.5 103 133-235 33-153 (213)
95 PRK06922 hypothetical protein; 99.3 4.2E-11 9.1E-16 123.3 13.4 97 133-235 417-538 (677)
96 PRK10909 rsmD 16S rRNA m(2)G96 99.3 9.1E-11 2E-15 105.8 14.1 112 120-237 40-162 (199)
97 TIGR03587 Pse_Me-ase pseudamin 99.3 7.5E-11 1.6E-15 106.9 13.3 99 122-234 32-142 (204)
98 PRK05785 hypothetical protein; 99.3 5.5E-11 1.2E-15 109.4 12.3 92 123-227 40-140 (226)
99 TIGR02021 BchM-ChlM magnesium 99.3 9.2E-11 2E-15 107.2 13.5 106 120-232 41-156 (219)
100 PRK14121 tRNA (guanine-N(7)-)- 99.3 6.5E-11 1.4E-15 116.0 13.0 110 122-238 112-239 (390)
101 PF07021 MetW: Methionine bios 99.2 2.6E-11 5.6E-16 107.2 9.1 96 131-238 10-113 (193)
102 PRK00216 ubiE ubiquinone/menaq 99.2 1.1E-10 2.4E-15 107.1 13.7 110 120-235 39-159 (239)
103 PLN02336 phosphoethanolamine N 99.2 1E-10 2.2E-15 119.0 12.5 104 122-234 27-142 (475)
104 PRK13168 rumA 23S rRNA m(5)U19 99.2 1.1E-10 2.4E-15 117.8 12.5 109 122-238 287-404 (443)
105 PLN03075 nicotianamine synthas 99.2 2.5E-10 5.4E-15 108.2 14.1 99 133-235 122-234 (296)
106 PF08704 GCD14: tRNA methyltra 99.2 1.6E-10 3.4E-15 107.2 12.4 121 112-238 20-150 (247)
107 TIGR01934 MenG_MenH_UbiE ubiqu 99.2 2.3E-10 5E-15 103.9 13.0 105 122-235 29-144 (223)
108 smart00138 MeTrc Methyltransfe 99.2 1.3E-10 2.8E-15 109.4 11.3 103 134-236 99-244 (264)
109 TIGR01983 UbiG ubiquinone bios 99.2 3.8E-10 8.3E-15 103.1 14.0 114 118-236 27-151 (224)
110 PRK03522 rumB 23S rRNA methylu 99.2 1.2E-10 2.6E-15 112.4 11.2 118 116-238 153-278 (315)
111 PTZ00146 fibrillarin; Provisio 99.2 1.9E-10 4.1E-15 108.7 12.0 109 120-235 117-238 (293)
112 TIGR02716 C20_methyl_CrtF C-20 99.2 2.7E-10 5.9E-15 109.4 13.1 105 121-234 138-254 (306)
113 PF01189 Nol1_Nop2_Fmu: NOL1/N 99.2 1.6E-11 3.5E-16 116.6 4.5 175 43-236 2-221 (283)
114 PLN02672 methionine S-methyltr 99.2 4.1E-10 9E-15 122.5 15.5 138 100-238 82-282 (1082)
115 PRK00811 spermidine synthase; 99.2 1.7E-10 3.7E-15 109.7 11.1 105 133-237 75-194 (283)
116 PRK13255 thiopurine S-methyltr 99.2 4.5E-10 9.7E-15 102.8 13.3 101 132-232 35-153 (218)
117 PRK15128 23S rRNA m(5)C1962 me 99.2 2.9E-10 6.2E-15 112.8 12.8 102 133-237 219-342 (396)
118 PRK04457 spermidine synthase; 99.2 3.2E-10 7E-15 106.6 12.4 100 133-236 65-179 (262)
119 KOG1271|consensus 99.2 1.8E-10 4E-15 100.0 9.4 117 122-243 49-190 (227)
120 COG4122 Predicted O-methyltran 99.1 4.2E-10 9.1E-15 102.2 12.1 107 121-232 47-164 (219)
121 PRK05134 bifunctional 3-demeth 99.1 5.2E-10 1.1E-14 103.0 12.7 99 132-236 46-153 (233)
122 PRK11188 rrmJ 23S rRNA methylt 99.1 2.5E-10 5.4E-15 103.9 10.3 90 132-237 49-168 (209)
123 COG2263 Predicted RNA methylas 99.1 4.3E-10 9.4E-15 98.7 11.3 93 113-214 23-119 (198)
124 PLN02476 O-methyltransferase 99.1 3.7E-10 8E-15 106.4 11.7 107 121-232 106-226 (278)
125 PF01596 Methyltransf_3: O-met 99.1 2E-10 4.3E-15 104.0 8.5 109 120-233 32-154 (205)
126 PRK06202 hypothetical protein; 99.1 5.5E-10 1.2E-14 103.0 11.6 92 133-234 59-166 (232)
127 PRK07580 Mg-protoporphyrin IX 99.1 1.1E-09 2.3E-14 100.5 13.5 89 120-215 48-139 (230)
128 PRK11783 rlmL 23S rRNA m(2)G24 99.1 4.1E-10 8.9E-15 119.6 11.9 102 133-237 537-659 (702)
129 cd02440 AdoMet_MTases S-adenos 99.1 1.2E-09 2.6E-14 85.1 11.4 92 137-233 1-103 (107)
130 PLN02366 spermidine synthase 99.1 7.7E-10 1.7E-14 106.2 12.2 103 133-237 90-209 (308)
131 KOG1541|consensus 99.1 6.6E-10 1.4E-14 99.4 10.5 110 117-238 33-164 (270)
132 TIGR03438 probable methyltrans 99.1 9.6E-10 2.1E-14 105.5 12.5 113 121-237 50-180 (301)
133 PHA03412 putative methyltransf 99.1 7.8E-10 1.7E-14 101.3 10.8 109 112-236 31-164 (241)
134 KOG2904|consensus 99.1 2.9E-09 6.3E-14 98.1 14.1 139 91-236 104-287 (328)
135 PF08003 Methyltransf_9: Prote 99.1 1.3E-09 2.7E-14 102.7 12.0 107 122-236 105-221 (315)
136 TIGR00479 rumA 23S rRNA (uraci 99.1 9.5E-10 2.1E-14 110.6 11.5 116 117-238 273-400 (431)
137 TIGR00438 rrmJ cell division p 99.1 7.5E-10 1.6E-14 98.8 9.5 89 132-236 30-148 (188)
138 TIGR02081 metW methionine bios 99.1 9.8E-10 2.1E-14 98.6 10.2 94 131-236 10-111 (194)
139 PLN02585 magnesium protoporphy 99.1 2E-09 4.2E-14 103.7 12.8 93 120-215 129-224 (315)
140 TIGR02085 meth_trns_rumB 23S r 99.1 9.5E-10 2.1E-14 108.6 10.9 126 107-238 203-338 (374)
141 KOG4300|consensus 99.1 5.7E-10 1.2E-14 98.8 8.3 96 136-236 78-184 (252)
142 PHA03411 putative methyltransf 99.0 1.4E-09 3.1E-14 101.8 11.2 89 111-214 45-137 (279)
143 PRK00274 ksgA 16S ribosomal RN 99.0 1.3E-09 2.9E-14 103.0 10.4 101 114-224 24-126 (272)
144 TIGR00417 speE spermidine synt 99.0 1.4E-09 3.1E-14 102.7 10.5 102 134-236 72-188 (270)
145 TIGR00755 ksgA dimethyladenosi 99.0 3.2E-09 7E-14 99.3 12.5 105 114-229 11-121 (253)
146 PTZ00338 dimethyladenosine tra 99.0 1.5E-09 3.2E-14 103.7 10.3 105 112-224 15-122 (294)
147 PRK01581 speE spermidine synth 99.0 2.6E-09 5.7E-14 103.6 11.6 105 133-237 149-271 (374)
148 PLN02589 caffeoyl-CoA O-methyl 99.0 3E-09 6.6E-14 98.9 11.4 106 122-232 68-188 (247)
149 PRK14896 ksgA 16S ribosomal RN 99.0 3.1E-09 6.6E-14 99.8 11.5 91 114-215 11-103 (258)
150 PF01170 UPF0020: Putative RNA 99.0 5.8E-09 1.2E-13 92.6 12.3 117 113-236 9-152 (179)
151 PRK13256 thiopurine S-methyltr 99.0 9.8E-09 2.1E-13 94.1 13.0 104 133-236 42-165 (226)
152 KOG3420|consensus 99.0 1.7E-09 3.8E-14 90.6 7.1 100 109-214 21-125 (185)
153 PRK03612 spermidine synthase; 99.0 2.2E-09 4.8E-14 110.3 9.4 105 133-237 296-418 (521)
154 PF02390 Methyltransf_4: Putat 98.9 4.8E-09 1E-13 94.4 9.9 99 135-238 18-137 (195)
155 COG1041 Predicted DNA modifica 98.9 8.2E-09 1.8E-13 99.0 11.8 114 116-236 181-312 (347)
156 PRK05031 tRNA (uracil-5-)-meth 98.9 3.8E-09 8.2E-14 103.9 9.5 118 116-238 187-324 (362)
157 TIGR00095 RNA methyltransferas 98.9 1E-08 2.2E-13 91.8 11.5 100 133-236 48-161 (189)
158 TIGR02143 trmA_only tRNA (urac 98.9 4.3E-09 9.2E-14 103.2 9.4 118 116-238 178-315 (353)
159 COG4976 Predicted methyltransf 98.9 5E-10 1.1E-14 100.7 2.6 110 116-237 109-228 (287)
160 COG1092 Predicted SAM-dependen 98.9 9E-09 2E-13 101.3 10.7 107 128-238 212-340 (393)
161 PF05724 TPMT: Thiopurine S-me 98.9 2E-08 4.3E-13 91.9 10.9 115 117-234 23-155 (218)
162 KOG2899|consensus 98.8 1.1E-08 2.3E-13 92.9 8.7 101 132-234 56-209 (288)
163 COG4262 Predicted spermidine s 98.8 2E-08 4.3E-13 95.9 10.6 215 100-334 258-496 (508)
164 COG2265 TrmA SAM-dependent met 98.8 1.7E-08 3.6E-13 101.1 10.0 117 116-238 273-400 (432)
165 PF03291 Pox_MCEL: mRNA cappin 98.8 2.4E-08 5.1E-13 96.8 10.3 105 134-238 62-190 (331)
166 PF03602 Cons_hypoth95: Conser 98.8 1.4E-08 3.1E-13 90.4 8.0 121 112-237 20-156 (183)
167 COG3963 Phospholipid N-methylt 98.8 3.7E-08 8E-13 84.7 9.8 122 102-236 19-158 (194)
168 PRK04338 N(2),N(2)-dimethylgua 98.8 3.7E-08 7.9E-13 97.4 11.3 112 120-237 44-161 (382)
169 COG0220 Predicted S-adenosylme 98.8 3.4E-08 7.4E-13 90.7 10.2 98 136-238 50-168 (227)
170 PF02475 Met_10: Met-10+ like- 98.8 2.5E-08 5.4E-13 89.9 9.0 97 130-231 97-199 (200)
171 KOG1122|consensus 98.8 2.7E-08 5.8E-13 96.7 9.2 100 132-236 239-373 (460)
172 PF10672 Methyltrans_SAM: S-ad 98.8 2.9E-08 6.2E-13 94.1 9.3 103 133-238 122-242 (286)
173 KOG1975|consensus 98.8 3.9E-08 8.4E-13 92.7 9.6 106 132-238 115-241 (389)
174 PLN02823 spermine synthase 98.7 9.3E-08 2E-12 92.8 11.6 102 134-236 103-222 (336)
175 COG0030 KsgA Dimethyladenosine 98.7 1.3E-07 2.8E-12 88.0 11.2 102 115-225 13-117 (259)
176 PRK11727 23S rRNA mA1618 methy 98.7 8.5E-08 1.8E-12 92.4 10.0 77 134-214 114-200 (321)
177 KOG3010|consensus 98.7 3.3E-08 7.1E-13 89.8 6.5 98 133-234 31-136 (261)
178 COG2521 Predicted archaeal met 98.7 2.1E-08 4.5E-13 90.6 5.1 104 132-238 132-249 (287)
179 PF02384 N6_Mtase: N-6 DNA Met 98.7 1E-07 2.2E-12 91.7 9.6 121 112-237 26-186 (311)
180 KOG1499|consensus 98.7 8.9E-08 1.9E-12 91.6 8.9 97 132-233 58-166 (346)
181 COG0742 N6-adenine-specific me 98.7 5.2E-07 1.1E-11 79.8 13.2 131 102-237 9-157 (187)
182 KOG0820|consensus 98.6 1.6E-07 3.5E-12 86.7 9.8 98 110-215 35-135 (315)
183 PF05185 PRMT5: PRMT5 arginine 98.6 2.1E-07 4.6E-12 93.7 11.1 92 135-231 187-294 (448)
184 PF10294 Methyltransf_16: Puta 98.6 3.2E-07 6.9E-12 81.0 10.8 102 132-236 43-158 (173)
185 PRK04148 hypothetical protein; 98.6 5.1E-07 1.1E-11 75.9 10.9 92 133-236 15-111 (134)
186 PF05219 DREV: DREV methyltran 98.6 3.4E-07 7.3E-12 84.6 10.6 90 134-237 94-191 (265)
187 COG2520 Predicted methyltransf 98.6 2.7E-07 5.9E-12 89.1 10.2 102 132-237 186-292 (341)
188 PRK00536 speE spermidine synth 98.6 4.5E-07 9.7E-12 84.9 11.2 102 133-238 71-175 (262)
189 PF05958 tRNA_U5-meth_tr: tRNA 98.6 1.6E-07 3.4E-12 92.1 8.5 118 116-238 177-314 (352)
190 PF00891 Methyltransf_2: O-met 98.6 4.3E-07 9.3E-12 84.1 10.8 88 132-234 98-199 (241)
191 PLN02232 ubiquinone biosynthes 98.5 3.5E-07 7.7E-12 79.6 9.0 77 158-236 1-83 (160)
192 COG0421 SpeE Spermidine syntha 98.5 4.3E-07 9.3E-12 86.0 10.2 101 136-237 78-193 (282)
193 TIGR00478 tly hemolysin TlyA f 98.5 2.4E-07 5.2E-12 85.2 8.1 96 133-236 74-173 (228)
194 PF06080 DUF938: Protein of un 98.5 4.6E-07 1E-11 81.3 9.4 104 124-232 14-139 (204)
195 TIGR02987 met_A_Alw26 type II 98.5 9.2E-07 2E-11 91.2 12.7 98 111-213 3-122 (524)
196 PF01564 Spermine_synth: Sperm 98.5 5.9E-07 1.3E-11 83.8 10.0 104 133-238 75-195 (246)
197 KOG3191|consensus 98.5 1.6E-06 3.5E-11 75.7 11.7 97 135-238 44-172 (209)
198 KOG1500|consensus 98.5 5.9E-07 1.3E-11 85.1 9.1 98 134-237 177-285 (517)
199 KOG2915|consensus 98.5 1.3E-06 2.8E-11 80.8 10.9 109 120-234 93-209 (314)
200 COG0116 Predicted N6-adenine-s 98.5 2.1E-06 4.7E-11 83.6 13.0 122 109-237 168-347 (381)
201 TIGR00308 TRM1 tRNA(guanine-26 98.5 9.1E-07 2E-11 87.2 10.5 126 101-236 16-149 (374)
202 KOG2361|consensus 98.5 1.9E-07 4.1E-12 84.9 5.2 96 137-238 74-187 (264)
203 PF02527 GidB: rRNA small subu 98.5 9.6E-07 2.1E-11 78.6 9.3 96 137-238 51-152 (184)
204 PF09445 Methyltransf_15: RNA 98.4 3.4E-07 7.3E-12 79.7 5.7 72 137-213 2-79 (163)
205 PRK00050 16S rRNA m(4)C1402 me 98.4 6E-07 1.3E-11 85.5 6.6 87 118-213 5-100 (296)
206 PRK01544 bifunctional N5-gluta 98.4 1.8E-06 4E-11 88.5 10.0 100 134-238 347-466 (506)
207 PRK11783 rlmL 23S rRNA m(2)G24 98.3 5.1E-06 1.1E-10 88.6 13.5 122 112-238 169-351 (702)
208 PF05891 Methyltransf_PK: AdoM 98.3 1.9E-06 4E-11 77.9 8.6 98 135-237 56-164 (218)
209 KOG1663|consensus 98.3 6.1E-06 1.3E-10 74.8 11.5 105 122-232 62-181 (237)
210 KOG2940|consensus 98.3 2.5E-07 5.4E-12 83.5 2.5 108 124-238 62-178 (325)
211 PF00398 RrnaAD: Ribosomal RNA 98.3 3.9E-06 8.4E-11 79.0 10.5 100 114-222 12-119 (262)
212 COG4076 Predicted RNA methylas 98.3 1.6E-06 3.5E-11 76.0 6.2 91 135-232 33-133 (252)
213 PF05148 Methyltransf_8: Hypot 98.3 3.6E-06 7.9E-11 75.5 8.4 95 122-237 61-161 (219)
214 PRK10611 chemotaxis methyltran 98.2 9E-06 1.9E-10 77.3 11.2 102 135-236 116-264 (287)
215 PF01739 CheR: CheR methyltran 98.2 6.8E-06 1.5E-10 74.0 9.8 103 134-236 31-177 (196)
216 PF08123 DOT1: Histone methyla 98.2 4.9E-06 1.1E-10 75.4 8.4 113 117-231 27-155 (205)
217 KOG2187|consensus 98.2 6.4E-06 1.4E-10 82.4 9.1 113 118-237 369-493 (534)
218 COG3897 Predicted methyltransf 98.2 5.8E-06 1.3E-10 73.1 7.7 95 133-238 78-181 (218)
219 TIGR00006 S-adenosyl-methyltra 98.1 2.1E-05 4.7E-10 75.1 10.1 88 118-213 6-102 (305)
220 KOG2198|consensus 98.1 1.6E-05 3.4E-10 76.8 9.1 101 132-237 153-299 (375)
221 COG0357 GidB Predicted S-adeno 98.1 1.4E-05 3E-10 72.7 7.9 96 135-236 68-170 (215)
222 COG1352 CheR Methylase of chem 98.0 7.9E-05 1.7E-09 70.1 12.9 101 135-235 97-242 (268)
223 TIGR03439 methyl_EasF probable 98.0 7.8E-05 1.7E-09 72.0 13.0 110 122-236 64-199 (319)
224 PF01269 Fibrillarin: Fibrilla 98.0 6E-05 1.3E-09 68.4 11.1 110 119-235 57-179 (229)
225 PF01728 FtsJ: FtsJ-like methy 98.0 1.5E-05 3.3E-10 70.5 6.7 100 122-237 7-142 (181)
226 PF12147 Methyltransf_20: Puta 98.0 0.00017 3.7E-09 67.8 13.8 100 134-238 135-253 (311)
227 COG0293 FtsJ 23S rRNA methylas 98.0 7.2E-05 1.6E-09 67.3 10.6 101 122-238 31-163 (205)
228 KOG3045|consensus 97.9 4.5E-05 9.8E-10 70.3 8.6 94 121-237 168-267 (325)
229 PF03141 Methyltransf_29: Puta 97.9 1.7E-05 3.6E-10 79.5 5.8 92 137-238 120-223 (506)
230 PF13679 Methyltransf_32: Meth 97.9 0.00012 2.6E-09 62.3 9.9 98 133-234 24-131 (141)
231 PF04816 DUF633: Family of unk 97.8 0.00013 2.9E-09 66.1 10.1 95 138-236 1-103 (205)
232 COG0500 SmtA SAM-dependent met 97.7 0.00056 1.2E-08 55.7 11.4 96 138-238 52-159 (257)
233 PF13578 Methyltransf_24: Meth 97.7 1.5E-05 3.2E-10 64.1 1.7 90 139-233 1-104 (106)
234 PRK11760 putative 23S rRNA C24 97.7 0.00015 3.4E-09 69.9 8.9 84 132-227 209-296 (357)
235 PRK10742 putative methyltransf 97.7 0.00012 2.7E-09 67.7 7.5 90 124-215 78-176 (250)
236 COG1889 NOP1 Fibrillarin-like 97.6 0.00063 1.4E-08 60.7 10.2 130 100-236 37-182 (231)
237 COG1189 Predicted rRNA methyla 97.6 0.00097 2.1E-08 61.1 11.7 95 133-237 78-181 (245)
238 COG2384 Predicted SAM-dependen 97.6 0.00044 9.5E-09 62.6 9.0 101 128-232 10-118 (226)
239 PF03059 NAS: Nicotianamine sy 97.6 0.0011 2.4E-08 62.6 12.0 97 136-236 122-232 (276)
240 PF01795 Methyltransf_5: MraW 97.5 0.00031 6.7E-09 67.3 8.2 88 118-213 6-103 (310)
241 PF09243 Rsm22: Mitochondrial 97.5 0.00069 1.5E-08 64.2 9.8 96 134-236 33-141 (274)
242 TIGR01444 fkbM_fam methyltrans 97.4 0.00039 8.4E-09 58.6 7.0 54 137-195 1-58 (143)
243 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.4 0.0011 2.5E-08 61.9 10.4 104 133-236 55-201 (256)
244 COG0275 Predicted S-adenosylme 97.4 0.00099 2.1E-08 63.1 9.9 85 118-210 9-103 (314)
245 PF05971 Methyltransf_10: Prot 97.4 0.0014 3E-08 62.6 10.7 77 135-215 103-189 (299)
246 KOG1269|consensus 97.3 0.00055 1.2E-08 67.2 6.6 107 125-235 101-216 (364)
247 COG0286 HsdM Type I restrictio 97.3 0.003 6.5E-08 64.7 12.1 120 112-237 166-329 (489)
248 KOG1331|consensus 97.2 0.0003 6.5E-09 65.9 4.2 92 132-236 43-145 (293)
249 KOG2730|consensus 97.2 0.00037 8.1E-09 62.9 4.6 74 134-212 94-174 (263)
250 COG1064 AdhP Zn-dependent alco 97.2 0.0013 2.8E-08 63.7 8.6 93 132-236 164-261 (339)
251 KOG3987|consensus 97.2 0.00017 3.6E-09 64.5 2.0 109 114-236 91-209 (288)
252 KOG1709|consensus 97.1 0.0041 8.9E-08 56.1 10.0 97 133-236 100-208 (271)
253 KOG1596|consensus 97.1 0.0021 4.5E-08 58.9 7.6 95 131-236 153-263 (317)
254 PF01861 DUF43: Protein of unk 97.0 0.023 5E-07 52.4 14.1 113 120-238 30-153 (243)
255 PF02005 TRM: N2,N2-dimethylgu 97.0 0.0013 2.8E-08 65.1 6.5 100 134-236 49-156 (377)
256 KOG4589|consensus 97.0 0.0026 5.7E-08 56.2 7.3 91 132-238 67-188 (232)
257 PF11599 AviRa: RRNA methyltra 97.0 0.001 2.2E-08 60.0 4.7 101 134-234 51-214 (246)
258 PF07942 N2227: N2227-like pro 96.9 0.0087 1.9E-07 56.4 10.9 102 134-236 56-203 (270)
259 KOG3115|consensus 96.9 0.0034 7.3E-08 56.2 7.3 104 134-237 60-186 (249)
260 KOG2671|consensus 96.9 0.0025 5.4E-08 61.2 6.6 118 114-236 190-356 (421)
261 PF07091 FmrO: Ribosomal RNA m 96.9 0.011 2.4E-07 54.7 10.7 109 121-237 92-211 (251)
262 KOG2352|consensus 96.8 0.0075 1.6E-07 60.6 10.1 99 131-235 44-162 (482)
263 KOG3178|consensus 96.8 0.0046 9.9E-08 59.7 8.3 88 136-235 179-276 (342)
264 COG1063 Tdh Threonine dehydrog 96.8 0.012 2.6E-07 57.7 10.9 96 132-235 166-270 (350)
265 PF04672 Methyltransf_19: S-ad 96.7 0.02 4.4E-07 53.7 11.5 110 120-238 55-194 (267)
266 PF06962 rRNA_methylase: Putat 96.7 0.0078 1.7E-07 51.0 7.9 79 156-238 1-96 (140)
267 KOG1562|consensus 96.7 0.0054 1.2E-07 57.9 7.1 101 133-236 120-238 (337)
268 KOG0024|consensus 96.6 0.0098 2.1E-07 56.9 8.7 95 132-235 167-274 (354)
269 PF11968 DUF3321: Putative met 96.6 0.0048 1E-07 55.9 6.0 96 122-237 33-152 (219)
270 COG4798 Predicted methyltransf 96.6 0.0071 1.5E-07 53.8 6.9 99 132-234 46-166 (238)
271 PF01555 N6_N4_Mtase: DNA meth 96.5 0.007 1.5E-07 54.6 7.0 54 116-172 176-231 (231)
272 PRK11524 putative methyltransf 96.4 0.0091 2E-07 56.8 7.4 55 119-176 196-252 (284)
273 cd00315 Cyt_C5_DNA_methylase C 96.4 0.0095 2.1E-07 56.5 7.1 68 137-215 2-74 (275)
274 PF04445 SAM_MT: Putative SAM- 96.2 0.019 4E-07 53.0 7.7 84 132-215 71-163 (234)
275 PF04989 CmcI: Cephalosporin h 96.1 0.04 8.6E-07 49.8 9.3 111 116-234 16-147 (206)
276 PRK09880 L-idonate 5-dehydroge 96.1 0.024 5.2E-07 55.0 8.6 93 132-233 167-265 (343)
277 KOG4058|consensus 96.1 0.025 5.4E-07 48.2 7.2 106 121-232 61-170 (199)
278 PRK13699 putative methylase; P 96.0 0.025 5.5E-07 52.0 7.6 55 119-176 151-207 (227)
279 PHA01634 hypothetical protein 96.0 0.04 8.6E-07 45.8 7.7 44 133-176 27-73 (156)
280 COG1867 TRM1 N2,N2-dimethylgua 95.9 0.051 1.1E-06 53.0 9.5 124 100-237 27-157 (380)
281 cd08230 glucose_DH Glucose deh 95.8 0.039 8.4E-07 53.8 8.7 92 132-233 170-268 (355)
282 KOG0822|consensus 95.6 0.039 8.5E-07 55.9 7.5 94 136-234 369-478 (649)
283 KOG3201|consensus 95.5 0.013 2.9E-07 50.6 3.3 103 134-238 29-144 (201)
284 COG3129 Predicted SAM-dependen 95.4 0.065 1.4E-06 49.1 7.5 99 120-221 60-171 (292)
285 cd08254 hydroxyacyl_CoA_DH 6-h 95.3 0.11 2.5E-06 49.5 9.6 93 132-233 163-262 (338)
286 PRK09424 pntA NAD(P) transhydr 95.2 0.1 2.2E-06 53.7 9.4 94 133-235 163-286 (509)
287 cd08283 FDH_like_1 Glutathione 95.0 0.14 3.1E-06 50.6 9.5 95 132-234 182-306 (386)
288 COG5459 Predicted rRNA methyla 94.9 0.081 1.7E-06 51.3 7.1 98 135-238 114-229 (484)
289 TIGR02822 adh_fam_2 zinc-bindi 94.9 0.27 5.8E-06 47.5 11.0 87 132-233 163-253 (329)
290 cd08237 ribitol-5-phosphate_DH 94.8 0.14 3E-06 49.7 8.8 86 132-233 161-255 (341)
291 TIGR00497 hsdM type I restrict 94.7 0.31 6.7E-06 50.2 11.5 122 112-236 195-357 (501)
292 KOG1501|consensus 94.7 0.086 1.9E-06 52.4 6.8 52 137-192 69-123 (636)
293 cd05188 MDR Medium chain reduc 94.7 0.12 2.7E-06 47.2 7.7 95 132-234 132-232 (271)
294 PF03141 Methyltransf_29: Puta 94.7 0.042 9.1E-07 55.6 4.7 88 136-236 367-469 (506)
295 TIGR03366 HpnZ_proposed putati 94.3 0.22 4.9E-06 46.8 8.7 93 132-234 118-218 (280)
296 KOG1099|consensus 94.2 0.075 1.6E-06 48.6 4.8 87 135-237 42-166 (294)
297 TIGR01202 bchC 2-desacetyl-2-h 94.2 0.26 5.7E-06 47.1 9.0 83 133-233 143-230 (308)
298 KOG2360|consensus 93.8 0.13 2.8E-06 50.4 5.9 101 100-214 188-295 (413)
299 cd00401 AdoHcyase S-adenosyl-L 93.8 0.37 8E-06 48.4 9.4 85 132-233 199-288 (413)
300 PF00145 DNA_methylase: C-5 cy 93.6 0.095 2.1E-06 50.0 4.7 67 137-215 2-73 (335)
301 PTZ00357 methyltransferase; Pr 93.3 0.36 7.9E-06 50.7 8.5 93 137-229 703-830 (1072)
302 TIGR03451 mycoS_dep_FDH mycoth 93.3 0.63 1.4E-05 45.3 10.0 93 132-233 174-275 (358)
303 COG1565 Uncharacterized conser 93.2 0.33 7.2E-06 47.4 7.7 75 102-176 35-131 (370)
304 KOG1253|consensus 93.2 0.091 2E-06 53.0 3.9 101 132-236 107-218 (525)
305 PF00107 ADH_zinc_N: Zinc-bind 93.1 0.24 5.2E-06 40.6 5.8 83 144-237 1-92 (130)
306 cd08281 liver_ADH_like1 Zinc-d 93.0 0.3 6.4E-06 48.0 7.3 93 132-233 189-289 (371)
307 PLN02586 probable cinnamyl alc 92.9 0.52 1.1E-05 46.1 8.8 92 132-233 181-277 (360)
308 TIGR00675 dcm DNA-methyltransf 92.8 0.16 3.4E-06 49.2 4.9 67 138-215 1-71 (315)
309 COG0270 Dcm Site-specific DNA 92.7 0.56 1.2E-05 45.6 8.6 71 135-215 3-79 (328)
310 cd08239 THR_DH_like L-threonin 92.6 0.4 8.7E-06 46.1 7.5 93 132-233 161-261 (339)
311 TIGR00561 pntA NAD(P) transhyd 92.5 0.36 7.7E-06 49.7 7.2 95 133-236 162-287 (511)
312 PLN02740 Alcohol dehydrogenase 92.5 0.79 1.7E-05 45.2 9.5 92 132-232 196-298 (381)
313 KOG1227|consensus 92.4 0.058 1.2E-06 51.2 1.2 91 134-229 194-290 (351)
314 TIGR03201 dearomat_had 6-hydro 92.2 1.1 2.3E-05 43.6 9.9 93 132-233 164-271 (349)
315 KOG2793|consensus 91.9 0.92 2E-05 42.3 8.5 99 134-234 86-199 (248)
316 PLN02827 Alcohol dehydrogenase 91.8 1.2 2.6E-05 44.0 9.9 92 132-232 191-293 (378)
317 PF02636 Methyltransf_28: Puta 91.8 0.56 1.2E-05 43.7 7.1 78 136-218 20-110 (252)
318 KOG2352|consensus 91.8 0.28 6E-06 49.6 5.3 101 132-237 293-419 (482)
319 cd08255 2-desacetyl-2-hydroxye 91.8 1 2.3E-05 41.7 9.0 91 132-234 95-190 (277)
320 cd08232 idonate-5-DH L-idonate 91.7 0.91 2E-05 43.5 8.8 91 134-233 165-261 (339)
321 PF07757 AdoMet_MTase: Predict 91.6 0.3 6.4E-06 39.5 4.3 44 120-163 42-89 (112)
322 COG1568 Predicted methyltransf 91.6 0.93 2E-05 42.8 8.1 100 133-238 151-264 (354)
323 PF10354 DUF2431: Domain of un 91.5 0.86 1.9E-05 39.9 7.6 93 141-238 3-129 (166)
324 TIGR02825 B4_12hDH leukotriene 91.4 2.1 4.5E-05 40.9 10.8 92 132-233 136-236 (325)
325 PLN02514 cinnamyl-alcohol dehy 91.3 1.2 2.6E-05 43.5 9.2 92 132-232 178-273 (357)
326 KOG2078|consensus 91.2 0.16 3.5E-06 50.4 2.9 65 131-198 246-312 (495)
327 PRK10309 galactitol-1-phosphat 91.0 0.84 1.8E-05 44.1 7.8 93 132-233 158-259 (347)
328 KOG2798|consensus 90.9 0.9 2E-05 43.6 7.5 51 120-170 130-188 (369)
329 TIGR02818 adh_III_F_hyde S-(hy 90.9 1.7 3.6E-05 42.6 9.8 93 132-233 183-286 (368)
330 PRK10458 DNA cytosine methylas 90.7 0.82 1.8E-05 46.7 7.6 40 135-174 88-130 (467)
331 PLN03154 putative allyl alcoho 90.7 1.2 2.7E-05 43.3 8.6 92 132-232 156-256 (348)
332 PF07279 DUF1442: Protein of u 90.6 2.3 5E-05 38.7 9.5 105 122-232 30-146 (218)
333 PF03492 Methyltransf_7: SAM d 90.5 0.95 2.1E-05 44.2 7.5 22 133-154 15-36 (334)
334 PF10237 N6-adenineMlase: Prob 90.2 4.7 0.0001 35.1 10.8 106 118-238 9-127 (162)
335 PF05711 TylF: Macrocin-O-meth 90.0 2.7 5.8E-05 39.3 9.7 97 135-234 75-212 (248)
336 cd08300 alcohol_DH_class_III c 89.7 2.9 6.2E-05 40.9 10.3 93 132-233 184-287 (368)
337 cd08245 CAD Cinnamyl alcohol d 89.6 3.6 7.8E-05 39.1 10.8 92 132-234 160-256 (330)
338 cd08277 liver_alcohol_DH_like 89.6 1 2.2E-05 44.1 7.0 93 132-233 182-285 (365)
339 TIGR02819 fdhA_non_GSH formald 89.5 1.1 2.4E-05 44.6 7.3 91 132-233 183-298 (393)
340 cd08242 MDR_like Medium chain 89.4 2.6 5.7E-05 39.9 9.6 85 132-232 153-243 (319)
341 cd08234 threonine_DH_like L-th 89.3 2.2 4.7E-05 40.7 9.0 91 132-233 157-256 (334)
342 COG1062 AdhC Zn-dependent alco 89.2 3.7 7.9E-05 40.0 10.1 101 124-237 177-288 (366)
343 PLN02178 cinnamyl-alcohol dehy 89.1 2 4.3E-05 42.4 8.7 91 133-233 177-272 (375)
344 cd05285 sorbitol_DH Sorbitol d 89.0 5.4 0.00012 38.3 11.6 92 132-233 160-264 (343)
345 PLN02668 indole-3-acetate carb 89.0 1.7 3.7E-05 43.2 8.1 19 135-153 64-82 (386)
346 PF06859 Bin3: Bicoid-interact 88.9 0.36 7.9E-06 39.1 2.7 34 203-236 1-46 (110)
347 KOG2651|consensus 88.8 1.3 2.7E-05 43.7 6.7 40 133-172 152-194 (476)
348 COG2933 Predicted SAM-dependen 88.7 1.5 3.2E-05 41.2 6.8 70 132-213 209-280 (358)
349 cd05278 FDH_like Formaldehyde 88.0 4 8.7E-05 39.1 9.9 93 132-233 165-266 (347)
350 cd08285 NADP_ADH NADP(H)-depen 87.9 4.4 9.6E-05 39.1 10.2 92 132-232 164-264 (351)
351 PRK01747 mnmC bifunctional tRN 87.9 1.2 2.6E-05 47.5 6.7 101 134-234 57-206 (662)
352 COG0686 Ald Alanine dehydrogen 87.7 1.3 2.8E-05 42.6 5.9 93 136-237 169-271 (371)
353 cd08261 Zn_ADH7 Alcohol dehydr 87.7 1.4 2.9E-05 42.3 6.4 93 131-232 156-256 (337)
354 PF02254 TrkA_N: TrkA-N domain 87.6 4.3 9.3E-05 32.4 8.4 83 143-237 4-99 (116)
355 cd08295 double_bond_reductase_ 87.6 7.1 0.00015 37.5 11.4 93 132-233 149-250 (338)
356 cd08298 CAD2 Cinnamyl alcohol 87.6 4.1 8.8E-05 38.7 9.6 86 132-232 165-254 (329)
357 TIGR00936 ahcY adenosylhomocys 87.5 3.2 7E-05 41.6 9.0 86 132-234 192-282 (406)
358 cd08301 alcohol_DH_plants Plan 87.3 4.7 0.0001 39.3 10.1 93 132-233 185-288 (369)
359 COG4301 Uncharacterized conser 87.2 6.1 0.00013 36.9 9.8 102 132-237 76-196 (321)
360 cd08294 leukotriene_B4_DH_like 87.2 5.8 0.00012 37.6 10.4 92 132-233 141-240 (329)
361 cd08231 MDR_TM0436_like Hypoth 87.1 7.2 0.00016 37.7 11.3 93 132-233 175-279 (361)
362 cd08293 PTGR2 Prostaglandin re 87.0 2.8 6E-05 40.3 8.1 92 132-232 150-252 (345)
363 cd08296 CAD_like Cinnamyl alco 86.5 2.4 5.3E-05 40.6 7.5 93 132-233 161-258 (333)
364 PF03269 DUF268: Caenorhabditi 86.3 0.51 1.1E-05 41.0 2.3 37 202-238 62-115 (177)
365 COG4627 Uncharacterized protei 85.9 0.22 4.7E-06 42.9 -0.2 42 197-238 41-90 (185)
366 cd08236 sugar_DH NAD(P)-depend 85.9 3.4 7.3E-05 39.6 8.1 92 132-233 157-257 (343)
367 KOG2920|consensus 85.8 0.78 1.7E-05 43.3 3.4 61 104-168 89-153 (282)
368 PRK11524 putative methyltransf 85.7 1.1 2.3E-05 42.7 4.4 52 185-236 7-82 (284)
369 COG0863 DNA modification methy 84.6 3.6 7.7E-05 38.8 7.5 55 122-176 210-266 (302)
370 cd08278 benzyl_alcohol_DH Benz 84.1 4.7 0.0001 39.3 8.3 91 132-233 184-284 (365)
371 COG3510 CmcI Cephalosporin hyd 84.0 4 8.7E-05 36.6 6.8 109 116-236 53-182 (237)
372 PLN02494 adenosylhomocysteinas 83.9 3.3 7.2E-05 42.2 7.1 87 132-235 251-342 (477)
373 COG0604 Qor NADPH:quinone redu 83.5 4.4 9.6E-05 39.3 7.7 105 122-237 131-244 (326)
374 cd08238 sorbose_phosphate_red 83.3 11 0.00023 37.6 10.5 102 132-235 173-289 (410)
375 TIGR00518 alaDH alanine dehydr 83.2 1.8 3.9E-05 42.8 4.9 92 134-234 166-267 (370)
376 cd05281 TDH Threonine dehydrog 83.1 18 0.00039 34.7 11.8 92 132-233 161-261 (341)
377 KOG0023|consensus 82.7 2 4.4E-05 41.4 4.8 98 132-237 179-282 (360)
378 PRK08306 dipicolinate synthase 82.3 8.6 0.00019 36.8 9.0 87 134-234 151-241 (296)
379 cd08240 6_hydroxyhexanoate_dh_ 82.2 15 0.00033 35.2 10.9 90 132-232 173-272 (350)
380 PLN02702 L-idonate 5-dehydroge 82.0 7.2 0.00016 37.9 8.6 92 132-232 179-283 (364)
381 COG1748 LYS9 Saccharopine dehy 82.0 3.3 7.2E-05 41.2 6.2 71 136-215 2-80 (389)
382 PF12692 Methyltransf_17: S-ad 81.9 2 4.4E-05 36.8 3.9 99 123-233 16-133 (160)
383 PRK10083 putative oxidoreducta 81.8 9.5 0.00021 36.4 9.3 93 132-233 158-258 (339)
384 PRK05476 S-adenosyl-L-homocyst 81.7 4.9 0.00011 40.5 7.4 85 133-234 210-299 (425)
385 PRK15001 SAM-dependent 23S rib 81.0 16 0.00034 36.4 10.6 107 122-236 33-144 (378)
386 TIGR00692 tdh L-threonine 3-de 81.0 22 0.00048 34.0 11.6 93 132-233 159-260 (340)
387 PF03686 UPF0146: Uncharacteri 80.8 3.8 8.2E-05 34.1 5.1 87 134-236 13-104 (127)
388 cd08233 butanediol_DH_like (2R 80.4 4.5 9.8E-05 39.0 6.5 93 132-233 170-271 (351)
389 COG1255 Uncharacterized protei 80.4 18 0.00038 29.8 8.7 87 133-236 13-104 (129)
390 cd08263 Zn_ADH10 Alcohol dehyd 79.9 16 0.00035 35.5 10.3 92 132-234 185-287 (367)
391 cd05279 Zn_ADH1 Liver alcohol 79.9 12 0.00027 36.4 9.5 92 132-233 181-284 (365)
392 KOG2539|consensus 79.5 2.4 5.3E-05 42.8 4.3 101 135-237 201-318 (491)
393 cd05283 CAD1 Cinnamyl alcohol 79.3 14 0.0003 35.4 9.5 91 132-233 167-262 (337)
394 cd08265 Zn_ADH3 Alcohol dehydr 79.1 19 0.0004 35.4 10.5 93 131-233 200-306 (384)
395 PRK09422 ethanol-active dehydr 79.1 8 0.00017 36.9 7.7 92 132-233 160-260 (338)
396 PRK05786 fabG 3-ketoacyl-(acyl 78.8 23 0.0005 31.6 10.4 93 134-234 4-135 (238)
397 COG2961 ComJ Protein involved 78.6 18 0.00039 33.8 9.3 108 116-232 72-193 (279)
398 cd05284 arabinose_DH_like D-ar 78.5 15 0.00034 34.9 9.6 90 132-233 165-265 (340)
399 cd08286 FDH_like_ADH2 formalde 78.4 22 0.00047 34.1 10.6 91 132-232 164-264 (345)
400 cd08243 quinone_oxidoreductase 78.1 14 0.00031 34.4 9.0 92 132-233 140-237 (320)
401 KOG0821|consensus 78.0 5.9 0.00013 36.3 5.9 68 120-195 38-108 (326)
402 cd08279 Zn_ADH_class_III Class 77.9 27 0.00058 33.9 11.2 91 132-233 180-281 (363)
403 PRK09496 trkA potassium transp 76.9 49 0.0011 33.1 13.0 107 117-236 213-332 (453)
404 KOG2782|consensus 76.8 0.89 1.9E-05 41.4 0.4 91 118-215 29-130 (303)
405 PRK05396 tdh L-threonine 3-deh 75.2 14 0.00031 35.3 8.3 95 132-235 161-264 (341)
406 PRK13699 putative methylase; P 75.0 3.7 8E-05 37.7 3.9 48 188-235 3-73 (227)
407 cd08284 FDH_like_2 Glutathione 74.3 37 0.0008 32.3 11.0 90 132-233 165-265 (344)
408 PRK08324 short chain dehydroge 74.2 20 0.00043 38.5 9.8 71 134-212 421-507 (681)
409 PRK07533 enoyl-(acyl carrier p 74.0 23 0.00049 32.6 9.1 72 134-212 9-97 (258)
410 KOG1098|consensus 73.6 2.6 5.7E-05 43.9 2.7 35 131-165 41-80 (780)
411 cd08235 iditol_2_DH_like L-idi 73.1 35 0.00076 32.4 10.5 92 132-234 163-265 (343)
412 cd08262 Zn_ADH8 Alcohol dehydr 72.4 33 0.00072 32.6 10.1 93 132-233 159-263 (341)
413 cd08299 alcohol_DH_class_I_II_ 71.9 39 0.00085 33.0 10.7 91 132-233 188-291 (373)
414 cd08270 MDR4 Medium chain dehy 71.6 54 0.0012 30.4 11.2 86 134-234 132-222 (305)
415 PRK03659 glutathione-regulated 71.5 15 0.00032 38.9 7.9 89 136-238 401-502 (601)
416 KOG1198|consensus 71.5 8.8 0.00019 37.7 5.8 98 131-237 154-259 (347)
417 KOG3924|consensus 70.3 9.7 0.00021 37.8 5.7 116 117-234 177-308 (419)
418 PF11899 DUF3419: Protein of u 69.9 13 0.00028 37.0 6.7 49 125-175 28-78 (380)
419 cd08241 QOR1 Quinone oxidoredu 69.9 18 0.00039 33.5 7.5 92 132-233 137-237 (323)
420 PRK05708 2-dehydropantoate 2-r 69.8 32 0.0007 32.9 9.3 93 136-234 3-104 (305)
421 cd08269 Zn_ADH9 Alcohol dehydr 69.8 76 0.0017 29.4 11.8 91 132-233 127-228 (312)
422 cd08297 CAD3 Cinnamyl alcohol 69.7 26 0.00056 33.4 8.7 94 132-234 163-265 (341)
423 PRK08945 putative oxoacyl-(acy 69.3 17 0.00038 32.8 7.1 74 133-212 10-101 (247)
424 PF02086 MethyltransfD12: D12 68.7 7.6 0.00016 35.8 4.6 52 121-174 9-62 (260)
425 cd08287 FDH_like_ADH3 formalde 68.5 29 0.00063 33.1 8.8 92 132-233 166-267 (345)
426 KOG1201|consensus 68.4 21 0.00046 34.2 7.4 73 134-213 37-124 (300)
427 PRK07889 enoyl-(acyl carrier p 68.4 24 0.00052 32.4 7.9 70 134-212 6-94 (256)
428 COG5379 BtaA S-adenosylmethion 68.1 17 0.00037 34.8 6.6 45 132-176 61-107 (414)
429 KOG2912|consensus 68.0 15 0.00032 35.7 6.2 70 139-213 107-188 (419)
430 cd01078 NAD_bind_H4MPT_DH NADP 67.8 30 0.00064 30.5 8.0 93 134-235 27-129 (194)
431 PRK06079 enoyl-(acyl carrier p 67.5 36 0.00077 31.1 8.8 70 134-212 6-92 (252)
432 PRK08594 enoyl-(acyl carrier p 67.3 38 0.00083 31.1 9.0 70 134-211 6-95 (257)
433 PTZ00075 Adenosylhomocysteinas 67.0 11 0.00025 38.4 5.7 83 133-234 252-341 (476)
434 PRK05562 precorrin-2 dehydroge 66.3 38 0.00082 31.1 8.5 91 133-237 23-119 (223)
435 PRK07806 short chain dehydroge 66.0 59 0.0013 29.2 9.9 94 134-234 5-134 (248)
436 cd08260 Zn_ADH6 Alcohol dehydr 65.9 67 0.0014 30.6 10.7 92 132-232 163-262 (345)
437 PF05050 Methyltransf_21: Meth 65.7 10 0.00022 31.8 4.5 34 140-173 1-42 (167)
438 PRK05808 3-hydroxybutyryl-CoA 65.1 7 0.00015 36.8 3.6 94 137-235 5-119 (282)
439 PRK06128 oxidoreductase; Provi 65.0 49 0.0011 31.1 9.4 93 134-233 54-190 (300)
440 cd05289 MDR_like_2 alcohol deh 65.0 32 0.00069 31.7 8.1 91 132-234 142-238 (309)
441 PRK08703 short chain dehydroge 64.9 29 0.00063 31.2 7.6 56 134-195 5-66 (239)
442 PRK06522 2-dehydropantoate 2-r 64.8 53 0.0011 30.8 9.6 93 136-234 1-100 (304)
443 PRK07066 3-hydroxybutyryl-CoA 64.3 16 0.00036 35.4 6.0 130 136-269 8-154 (321)
444 TIGR02356 adenyl_thiF thiazole 64.1 21 0.00045 32.0 6.3 30 134-163 20-54 (202)
445 PF05206 TRM13: Methyltransfer 64.0 14 0.00031 34.7 5.3 35 132-166 16-59 (259)
446 cd08246 crotonyl_coA_red croto 63.7 56 0.0012 32.0 9.9 96 132-233 191-314 (393)
447 cd08256 Zn_ADH2 Alcohol dehydr 63.3 54 0.0012 31.4 9.5 91 132-233 172-273 (350)
448 cd01483 E1_enzyme_family Super 62.7 70 0.0015 26.5 9.0 37 202-238 88-124 (143)
449 cd08273 MDR8 Medium chain dehy 62.3 74 0.0016 29.9 10.2 92 132-234 137-233 (331)
450 cd05286 QOR2 Quinone oxidoredu 62.3 58 0.0012 30.0 9.3 90 132-233 134-234 (320)
451 PRK09496 trkA potassium transp 62.3 73 0.0016 31.9 10.6 86 136-234 1-99 (453)
452 cd08274 MDR9 Medium chain dehy 62.2 55 0.0012 31.2 9.3 88 132-232 175-271 (350)
453 TIGR01470 cysG_Nterm siroheme 62.1 85 0.0019 28.2 10.0 91 134-238 8-104 (205)
454 PF00106 adh_short: short chai 61.8 55 0.0012 27.3 8.3 70 137-213 2-90 (167)
455 PRK08265 short chain dehydroge 61.8 51 0.0011 30.2 8.7 69 134-212 5-89 (261)
456 PRK06940 short chain dehydroge 61.7 46 0.001 30.9 8.5 69 137-213 4-86 (275)
457 cd05288 PGDH Prostaglandin deh 61.3 39 0.00084 31.8 8.0 90 132-232 143-242 (329)
458 PRK07417 arogenate dehydrogena 61.1 43 0.00093 31.5 8.2 84 137-236 2-92 (279)
459 PRK03562 glutathione-regulated 60.8 36 0.00077 36.2 8.3 90 136-237 401-501 (621)
460 PRK07984 enoyl-(acyl carrier p 60.7 88 0.0019 28.9 10.2 72 134-212 5-93 (262)
461 PRK06500 short chain dehydroge 60.7 59 0.0013 29.1 8.8 69 134-212 5-89 (249)
462 TIGR02817 adh_fam_1 zinc-bindi 60.3 48 0.001 31.4 8.5 90 135-233 149-246 (336)
463 PRK07819 3-hydroxybutyryl-CoA 60.1 19 0.00041 34.2 5.5 96 136-236 6-123 (286)
464 PRK08415 enoyl-(acyl carrier p 60.1 73 0.0016 29.7 9.5 72 134-212 4-92 (274)
465 cd05213 NAD_bind_Glutamyl_tRNA 59.9 52 0.0011 31.6 8.6 91 133-237 176-275 (311)
466 PRK13771 putative alcohol dehy 59.8 34 0.00074 32.4 7.4 90 132-233 160-254 (334)
467 cd08267 MDR1 Medium chain dehy 59.8 88 0.0019 29.0 10.1 92 132-234 141-240 (319)
468 PRK10669 putative cation:proto 59.5 46 0.00099 34.7 8.8 87 136-236 418-517 (558)
469 PTZ00354 alcohol dehydrogenase 58.9 1.5E+02 0.0032 27.7 11.7 90 132-232 138-238 (334)
470 PRK07774 short chain dehydroge 58.8 51 0.0011 29.6 8.1 72 134-212 5-92 (250)
471 PRK07109 short chain dehydroge 58.5 93 0.002 30.0 10.2 72 134-212 7-94 (334)
472 PF01262 AlaDh_PNT_C: Alanine 58.4 2.1 4.6E-05 37.2 -1.2 40 134-173 19-62 (168)
473 PRK08251 short chain dehydroge 58.3 57 0.0012 29.3 8.3 73 135-212 2-90 (248)
474 PRK08159 enoyl-(acyl carrier p 57.9 92 0.002 28.9 9.8 72 134-212 9-97 (272)
475 PRK12744 short chain dehydroge 57.7 72 0.0016 29.0 8.9 72 134-212 7-98 (257)
476 COG4017 Uncharacterized protei 57.7 20 0.00043 32.3 4.7 81 133-230 43-126 (254)
477 cd01492 Aos1_SUMO Ubiquitin ac 57.2 51 0.0011 29.4 7.6 94 135-235 21-142 (197)
478 PRK07102 short chain dehydroge 57.1 47 0.001 29.8 7.5 70 136-211 2-84 (243)
479 KOG1197|consensus 56.9 70 0.0015 30.3 8.3 93 131-232 143-243 (336)
480 PRK06249 2-dehydropantoate 2-r 56.8 47 0.001 31.7 7.8 94 134-233 4-105 (313)
481 cd08244 MDR_enoyl_red Possible 56.8 93 0.002 29.0 9.8 92 132-234 140-241 (324)
482 cd08276 MDR7 Medium chain dehy 56.1 1.1E+02 0.0025 28.5 10.3 92 132-233 158-258 (336)
483 KOG0022|consensus 55.9 22 0.00048 34.5 5.1 90 132-232 190-292 (375)
484 cd08289 MDR_yhfp_like Yhfp put 55.6 56 0.0012 30.7 8.0 90 134-234 146-243 (326)
485 cd08258 Zn_ADH4 Alcohol dehydr 55.4 90 0.0019 29.4 9.4 32 202-233 232-263 (306)
486 PRK00066 ldh L-lactate dehydro 55.1 60 0.0013 31.3 8.2 98 133-237 4-125 (315)
487 PRK06701 short chain dehydroge 55.1 58 0.0013 30.6 8.0 71 134-211 45-132 (290)
488 PF02826 2-Hacid_dh_C: D-isome 54.8 15 0.00033 32.1 3.7 80 134-232 35-125 (178)
489 COG0287 TyrA Prephenate dehydr 54.5 53 0.0012 31.2 7.5 82 136-231 4-95 (279)
490 cd08282 PFDH_like Pseudomonas 54.3 31 0.00068 33.6 6.2 92 132-232 174-283 (375)
491 PRK07326 short chain dehydroge 54.2 55 0.0012 29.1 7.4 70 134-211 5-90 (237)
492 PF08484 Methyltransf_14: C-me 54.2 34 0.00073 29.7 5.7 99 122-235 55-160 (160)
493 TIGR00027 mthyl_TIGR00027 meth 54.1 1.9E+02 0.0041 27.0 11.7 99 136-236 83-199 (260)
494 PRK06603 enoyl-(acyl carrier p 54.0 1.1E+02 0.0024 28.0 9.6 72 134-212 7-95 (260)
495 PRK07502 cyclohexadienyl dehyd 53.4 65 0.0014 30.6 8.1 86 136-236 7-101 (307)
496 PRK09260 3-hydroxybutyryl-CoA 53.2 26 0.00056 33.1 5.2 96 137-236 3-119 (288)
497 cd01491 Ube1_repeat1 Ubiquitin 52.8 66 0.0014 30.7 7.9 95 135-238 19-140 (286)
498 PRK07904 short chain dehydroge 52.3 61 0.0013 29.6 7.5 74 132-211 5-95 (253)
499 PRK08217 fabG 3-ketoacyl-(acyl 52.3 60 0.0013 29.0 7.4 72 134-212 4-91 (253)
500 PRK06484 short chain dehydroge 52.0 86 0.0019 32.0 9.3 69 134-212 268-352 (520)
No 1
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=100.00 E-value=3.6e-34 Score=259.24 Aligned_cols=201 Identities=34% Similarity=0.471 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCcc-ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEE
Q psy7830 62 SYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPK-FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLD 140 (364)
Q Consensus 62 ~~~~l~~~l~~~~~~~~~~~~~a~~~v~R~~~~p~~~~-~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLD 140 (364)
+++.|+++|++.|.+.|+.+.++|+.+||+.|+|..++ .+|.|.+++++.|+++++|+++++++++|. +++|++|||
T Consensus 1 ~~~~lv~~l~~~g~v~~~~v~~A~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L~--l~pg~~VLe 78 (209)
T PF01135_consen 1 SNKALVDNLIRPGDVTDPRVLDAFRAVPREDFVPPAFRDLAYEDRPLPIGCGQTISAPSMVARMLEALD--LKPGDRVLE 78 (209)
T ss_dssp CHHHHHHHHHHTTSS-SHHHHHHHHHS-GGGCSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTT--C-TT-EEEE
T ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHhCCHHHhCchhhhcCCCCCCCeeecceeechHHHHHHHHHHHHh--cCCCCEEEE
Confidence 36789999999999999999999999999999999766 899999999999999999999999999998 999999999
Q ss_pred ECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChHH
Q psy7830 141 IGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTE 215 (364)
Q Consensus 141 iGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~ 215 (364)
||||+||.+..++.+ +|+++|+++.+++.|++++.. ++..|+.++.+|....++..++||+|+++..+..
T Consensus 79 IGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~-----~~~~nv~~~~gdg~~g~~~~apfD~I~v~~a~~~ 153 (209)
T PF01135_consen 79 IGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLAR-----LGIDNVEVVVGDGSEGWPEEAPFDRIIVTAAVPE 153 (209)
T ss_dssp ES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHH-----HTTHSEEEEES-GGGTTGGG-SEEEEEESSBBSS
T ss_pred ecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHH-----hccCceeEEEcchhhccccCCCcCEEEEeeccch
Confidence 999999999999987 699999999999999999998 3456999999999888777789999999999999
Q ss_pred HHHHHHhccCCCcEEEEEEcCCCcceEEEEEecCCCceeEEEeeceeEEeccCc
Q psy7830 216 VSKTILSQLKPNGRIVAPVGNVWRQNLSVIDKGPDGSISSKILRRVSSDFLCNL 269 (364)
Q Consensus 216 l~~~l~~~LkpGG~Lvi~~~~~~~~~l~~~~~~~~g~~~~~~l~~~~f~~l~~~ 269 (364)
++..+.++||+||+||+++.....+.+.++.|..++.++.+.++.++|+|+.+.
T Consensus 154 ip~~l~~qL~~gGrLV~pi~~~~~~~l~~~~k~~~g~~~~~~~~~~~fvpl~~~ 207 (209)
T PF01135_consen 154 IPEALLEQLKPGGRLVAPIGQGGSQRLVRITKKGDGEFSREELFPVRFVPLVGG 207 (209)
T ss_dssp --HHHHHTEEEEEEEEEEESSSSSEEEEEEEEETTTEEEEEEEEEE---B-BSC
T ss_pred HHHHHHHhcCCCcEEEEEEccCCceEEEEEEEeCCCcEEEEEEeeEEEEeccCC
Confidence 999999999999999999999778999999999989999999999999999865
No 2
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-34 Score=253.63 Aligned_cols=198 Identities=32% Similarity=0.432 Sum_probs=186.2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCcc-ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEEC
Q psy7830 64 ADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPK-FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIG 142 (364)
Q Consensus 64 ~~l~~~l~~~~~~~~~~~~~a~~~v~R~~~~p~~~~-~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiG 142 (364)
+.|.++|...+ +.++.++++|..+||+.|+|..++ .+|.|..++++.|+++|+|+++++++++|. ++++++|||||
T Consensus 4 ~~l~~~lr~~~-i~~~~v~~A~~~vPRe~FVp~~~~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~--~~~g~~VLEIG 80 (209)
T COG2518 4 RMLVERLRTEG-ITDERVLKAFLAVPRELFVPAAYKHLAYEDRALPIGCGQTISAPHMVARMLQLLE--LKPGDRVLEIG 80 (209)
T ss_pred HHHHHHHHHcC-CCcHHHHHHHHhCCHHhccCchhhcccccCCcccCCCCceecCcHHHHHHHHHhC--CCCCCeEEEEC
Confidence 34777777776 567999999999999999998876 899999999999999999999999999998 89999999999
Q ss_pred CCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChHHHHHHH
Q psy7830 143 SGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTI 220 (364)
Q Consensus 143 cGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~l~~~l 220 (364)
|||||.++.+++. +|+++|+++...+.|++|++. ++..||.++++|....+++.++||+|++++....+++.+
T Consensus 81 tGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~-----lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP~~L 155 (209)
T COG2518 81 TGSGYQAAVLARLVGRVVSIERIEELAEQARRNLET-----LGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVPEAL 155 (209)
T ss_pred CCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHH-----cCCCceEEEECCcccCCCCCCCcCEEEEeeccCCCCHHH
Confidence 9999999999999 999999999999999999999 667889999999999998889999999999999999999
Q ss_pred HhccCCCcEEEEEEcCCCcceEEEEEecCCCceeEEEeeceeEEeccCc
Q psy7830 221 LSQLKPNGRIVAPVGNVWRQNLSVIDKGPDGSISSKILRRVSSDFLCNL 269 (364)
Q Consensus 221 ~~~LkpGG~Lvi~~~~~~~~~l~~~~~~~~g~~~~~~l~~~~f~~l~~~ 269 (364)
.++||+||+|+++++....+.+.++.|.+++.+..+.+++++|+|+.+.
T Consensus 156 l~QL~~gGrlv~PvG~~~~q~l~~~~k~~~~~~~~~~l~~v~~vPl~~~ 204 (209)
T COG2518 156 LDQLKPGGRLVIPVGSGPAQRLLRITKDGDGNFERRDLFNVRFVPLVGG 204 (209)
T ss_pred HHhcccCCEEEEEEccCCcEEEEEEEEcCCCcEEEeeeccceeeecCCc
Confidence 9999999999999998889999999999999999999999999999873
No 3
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.97 E-value=6.7e-30 Score=232.79 Aligned_cols=200 Identities=28% Similarity=0.412 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCcc-ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEE
Q psy7830 62 SYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPK-FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLD 140 (364)
Q Consensus 62 ~~~~l~~~l~~~~~~~~~~~~~a~~~v~R~~~~p~~~~-~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLD 140 (364)
.++.|+++|.+.|.+.|+.++++|+.+||+.|+|.... .+|.|.+++++.|+++++|.+++++++.+. ++++++|||
T Consensus 5 ~~~~~v~~l~~~~~v~~~~v~~a~~~v~R~~fvp~~~~~~ay~d~~~~~~~g~~~~~p~~~~~~~~~l~--~~~g~~VLd 82 (212)
T PRK13942 5 EKRRVIEELIREGYIKSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTISAIHMVAIMCELLD--LKEGMKVLE 82 (212)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHcCCHhhcCCchhhhcCcCCCCccCCCCCEeCcHHHHHHHHHHcC--CCCcCEEEE
Confidence 34779999999999999999999999999999999765 899999999999999999999999999997 789999999
Q ss_pred ECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChHH
Q psy7830 141 IGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTE 215 (364)
Q Consensus 141 iGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~ 215 (364)
+|||+|+++..+++. +|+++|+++.+++.++++++. .+..+++++.+|+...+...++||+|+++...++
T Consensus 83 IG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~-----~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~ 157 (212)
T PRK13942 83 IGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKK-----LGYDNVEVIVGDGTLGYEENAPYDRIYVTAAGPD 157 (212)
T ss_pred ECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH-----cCCCCeEEEECCcccCCCcCCCcCEEEECCCccc
Confidence 999999999888765 899999999999999999987 3456899999999876665678999999999999
Q ss_pred HHHHHHhccCCCcEEEEEEcCCCcceEEEEEecCCCceeEEEeeceeEEeccCcc
Q psy7830 216 VSKTILSQLKPNGRIVAPVGNVWRQNLSVIDKGPDGSISSKILRRVSSDFLCNLE 270 (364)
Q Consensus 216 l~~~l~~~LkpGG~Lvi~~~~~~~~~l~~~~~~~~g~~~~~~l~~~~f~~l~~~~ 270 (364)
+++.+.+.|||||+|+++++.. .+.+..+.|.. +.++.+.++.+.|+|+.+..
T Consensus 158 ~~~~l~~~LkpgG~lvi~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~~~ 210 (212)
T PRK13942 158 IPKPLIEQLKDGGIMVIPVGSY-SQELIRVEKDN-GKIIKKKLGEVAFVPLIGKN 210 (212)
T ss_pred chHHHHHhhCCCcEEEEEEcCC-CcEEEEEEEEC-CEEEEEEeccEEEEecccCC
Confidence 9999999999999999999875 67888888864 67889999999999998754
No 4
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.97 E-value=4.3e-29 Score=226.35 Aligned_cols=198 Identities=21% Similarity=0.306 Sum_probs=175.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCcc-ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEE
Q psy7830 63 YADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPK-FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDI 141 (364)
Q Consensus 63 ~~~l~~~l~~~~~~~~~~~~~a~~~v~R~~~~p~~~~-~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDi 141 (364)
++.|++++.+.|.+.|+.++++|+.+||+.|+|..++ .+|.|.+++++.+++++.|.+++.+++.+. ++++++|||+
T Consensus 2 ~~~lv~~~~~~~~v~~~~v~~a~~~vpR~~fv~~~~~~~ay~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VLDi 79 (205)
T PRK13944 2 AKRLVEELVREGIIKSERVKKAMLSVPREEFVMPEYRMMAYEDRPLPLFAGATISAPHMVAMMCELIE--PRPGMKILEV 79 (205)
T ss_pred HHHHHHHHHHcCCcCCHHHHHHHHhCCHhHcCChhHHhcCccCCCcccCCCCEechHHHHHHHHHhcC--CCCCCEEEEE
Confidence 3569999999998999999999999999999998765 899999999999999999999999999987 6889999999
Q ss_pred CCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChHHH
Q psy7830 142 GSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEV 216 (364)
Q Consensus 142 GcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~l 216 (364)
|||+|+.+..+++. +|+++|+++.+++.|++|+..+. + ..+++++.+|+....+..++||+|+++....++
T Consensus 80 G~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~---~-~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~ 155 (205)
T PRK13944 80 GTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG---Y-WGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTI 155 (205)
T ss_pred CcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC---C-CCcEEEEECCcccCCccCCCccEEEEccCcchh
Confidence 99999999888764 89999999999999999998722 1 136999999998765555789999999999999
Q ss_pred HHHHHhccCCCcEEEEEEcCCCcceEEEEEecCCCceeEEEeeceeEEecc
Q psy7830 217 SKTILSQLKPNGRIVAPVGNVWRQNLSVIDKGPDGSISSKILRRVSSDFLC 267 (364)
Q Consensus 217 ~~~l~~~LkpGG~Lvi~~~~~~~~~l~~~~~~~~g~~~~~~l~~~~f~~l~ 267 (364)
++++.++|+|||+|++++.....+.+..++|.. +.++.+.++.+.|+|++
T Consensus 156 ~~~l~~~L~~gG~lvi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~pl~ 205 (205)
T PRK13944 156 PSALVRQLKDGGVLVIPVEEGVGQVLYKVVKRG-EKVEKRAITYVLFVPLR 205 (205)
T ss_pred hHHHHHhcCcCcEEEEEEcCCCceEEEEEEEeC-CEEEEEEeceEEEEecC
Confidence 999999999999999999877677888888864 56888999999999984
No 5
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.97 E-value=7.9e-29 Score=226.19 Aligned_cols=203 Identities=26% Similarity=0.395 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCcc-ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEE
Q psy7830 60 TRSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPK-FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRV 138 (364)
Q Consensus 60 ~~~~~~l~~~l~~~~~~~~~~~~~a~~~v~R~~~~p~~~~-~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~V 138 (364)
..++++|+++|.+.+.+.|+.+.++|+.+||+.|+|..+. .+|.|.+++++.++++++|.+++.+++.+. ++++.+|
T Consensus 4 ~~~~~~~v~~~~~~~~v~~~~v~~a~~~v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~V 81 (215)
T TIGR00080 4 ESQKKALIDKLINEGYIKSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLE--LKPGMKV 81 (215)
T ss_pred hHHHHHHHHHHHhcCCcCCHHHHHHHHhCChhhhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhC--CCCcCEE
Confidence 3467889999999998999999999999999999998655 799999999999999999999999999997 7899999
Q ss_pred EEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccCh
Q psy7830 139 LDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGT 213 (364)
Q Consensus 139 LDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~ 213 (364)
||+|||+|+++..+++. +|+++|+++.+++.|++++.. .+.++++++.+|+........+||+|+++...
T Consensus 82 LDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~-----~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~ 156 (215)
T TIGR00080 82 LEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK-----LGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAG 156 (215)
T ss_pred EEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-----CCCCCeEEEECCcccCCcccCCCCEEEEcCCc
Confidence 99999999999999877 499999999999999999988 44568999999998765545689999999989
Q ss_pred HHHHHHHHhccCCCcEEEEEEcCCCcceEEEEEecCCCceeEEEeeceeEEeccCccc
Q psy7830 214 TEVSKTILSQLKPNGRIVAPVGNVWRQNLSVIDKGPDGSISSKILRRVSSDFLCNLEY 271 (364)
Q Consensus 214 ~~l~~~l~~~LkpGG~Lvi~~~~~~~~~l~~~~~~~~g~~~~~~l~~~~f~~l~~~~~ 271 (364)
.++++.+.+.|+|||+|+++++. ..+.+..+.|. ++.+....++.+.|+|+.....
T Consensus 157 ~~~~~~~~~~L~~gG~lv~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~pl~~~~~ 212 (215)
T TIGR00080 157 PKIPEALIDQLKEGGILVMPVGE-YLQVLKRAEKR-GGEIIIKDVEPVAFVPLVGGEG 212 (215)
T ss_pred ccccHHHHHhcCcCcEEEEEEcC-CceEEEEEEEe-CCEEEEEEeeeEEEEeCCCCcc
Confidence 99999999999999999999987 67777777775 5668889999999999987654
No 6
>KOG1661|consensus
Probab=99.96 E-value=8.1e-28 Score=211.45 Aligned_cols=216 Identities=33% Similarity=0.494 Sum_probs=194.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCcc-ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEE
Q psy7830 60 TRSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPK-FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRV 138 (364)
Q Consensus 60 ~~~~~~l~~~l~~~~~~~~~~~~~a~~~v~R~~~~p~~~~-~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~V 138 (364)
..++++|++.|.+.++++.+.++++|+.++|..|.|..++ +.|.|.+..+|.+.++|.|++.+.++++|..+++||.+.
T Consensus 7 gs~n~~LId~L~~~~~Ir~~~v~~A~~a~dR~dy~p~~~~~n~y~d~pq~~G~n~~iSAp~mha~~le~L~~~L~pG~s~ 86 (237)
T KOG1661|consen 7 GSDNDDLIDNLRENKIIRTRRVEQAMRATDRSDYAPRSERTNPYMDSPQKIGYNLTISAPHMHATALEYLDDHLQPGASF 86 (237)
T ss_pred CcchHHHHHHHHhcchhHHHHHHHHHHhhchhhccccccccCCCCCCccccCCceEEcchHHHHHHHHHHHHhhccCcce
Confidence 3467899999999999999999999999999999999766 899999999999999999999999999999999999999
Q ss_pred EEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcC-----CCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830 139 LDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISR-----PDLLQSKTLEFILKDARWGHAEGGPYDVI 207 (364)
Q Consensus 139 LDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~-----~~~l~~~~v~~~~~D~~~~~~~~~~fD~I 207 (364)
||+|+||||++..++.+ .++|||..++.++.+++|+.... ...+...++.++.+|......+..+||.|
T Consensus 87 LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~YDaI 166 (237)
T KOG1661|consen 87 LDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPYDAI 166 (237)
T ss_pred eecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCcceE
Confidence 99999999999998866 45999999999999999998732 11234467899999999998888999999
Q ss_pred EEccChHHHHHHHHhccCCCcEEEEEEcCCC-cceEEEEEecCCCceeEEEeeceeEEeccCcccccCC
Q psy7830 208 FFGAGTTEVSKTILSQLKPNGRIVAPVGNVW-RQNLSVIDKGPDGSISSKILRRVSSDFLCNLEYQLHP 275 (364)
Q Consensus 208 i~~~~~~~l~~~l~~~LkpGG~Lvi~~~~~~-~~~l~~~~~~~~g~~~~~~l~~~~f~~l~~~~~~~~~ 275 (364)
++.+..+.+++++.++|++||+|+++.+..+ .|.+..+.+..+|....+.++.+.|+|+.....++..
T Consensus 167 hvGAaa~~~pq~l~dqL~~gGrllip~~~~~~~q~~~~~dk~~~gki~~~~~f~v~yvPlt~~~~q~~~ 235 (237)
T KOG1661|consen 167 HVGAAASELPQELLDQLKPGGRLLIPVGQDGGTQYLRQIDKNEDGKIKLRTLFSVRYVPLTSRESQPSR 235 (237)
T ss_pred EEccCccccHHHHHHhhccCCeEEEeecccCceeEEEeecccccCceeeeEeeceEEEeccccccccCC
Confidence 9999999999999999999999999999754 7888888898889999999999999999988765543
No 7
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.95 E-value=3.9e-26 Score=207.86 Aligned_cols=201 Identities=26% Similarity=0.342 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCcc-ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEE
Q psy7830 60 TRSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPK-FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRV 138 (364)
Q Consensus 60 ~~~~~~l~~~l~~~~~~~~~~~~~a~~~v~R~~~~p~~~~-~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~V 138 (364)
...++.|++++...+ +.++.+.++|+.++|+.|+|..+. .+|.|..++++.++.+++|.+++++++.+. ++++++|
T Consensus 6 ~~~~~~~v~~l~~~~-~~~~~~~~a~~~~~r~~f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~--~~~~~~V 82 (212)
T PRK00312 6 SERFARLVLRLRAEG-ILDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLE--LKPGDRV 82 (212)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHcCCHhHcCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcC--CCCCCEE
Confidence 356888999998887 889999999999999999997654 789999999999999999999999999887 7889999
Q ss_pred EEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChHHH
Q psy7830 139 LDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEV 216 (364)
Q Consensus 139 LDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~l 216 (364)
||+|||+|+++..+++. +|+++|+++.+++.+++++.+ .+..++++..+|........++||+|+++..++++
T Consensus 83 LeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~-----~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~ 157 (212)
T PRK00312 83 LEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQ-----LGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPEI 157 (212)
T ss_pred EEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHH-----CCCCceEEEECCcccCCCcCCCcCEEEEccCchhh
Confidence 99999999999988877 999999999999999999987 33467999999987655445789999999999999
Q ss_pred HHHHHhccCCCcEEEEEEcCCCcceEEEEEecCCCceeEEEeeceeEEeccCc
Q psy7830 217 SKTILSQLKPNGRIVAPVGNVWRQNLSVIDKGPDGSISSKILRRVSSDFLCNL 269 (364)
Q Consensus 217 ~~~l~~~LkpGG~Lvi~~~~~~~~~l~~~~~~~~g~~~~~~l~~~~f~~l~~~ 269 (364)
++.+.+.|+|||+++++++....+.+..+.+ .++.+..+.++.+.|+|+...
T Consensus 158 ~~~l~~~L~~gG~lv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~ 209 (212)
T PRK00312 158 PRALLEQLKEGGILVAPVGGEEQQLLTRVRK-RGGRFEREVLEEVRFVPLVKG 209 (212)
T ss_pred hHHHHHhcCCCcEEEEEEcCCCceEEEEEEE-cCCeEEEEEEccEEEEecCCC
Confidence 9999999999999999998555677777777 466788899999999998754
No 8
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=5.9e-27 Score=220.04 Aligned_cols=217 Identities=20% Similarity=0.153 Sum_probs=166.3
Q ss_pred eeeeeEEEEEec-CCCCCCCCCCCCCCCCCcceeeccCCCccchhhhcccHHHHHHHHHH-H-HHcCCCCCHHHH-----
Q psy7830 11 ERCVLAVFFILV-SRGQGWKPDPGMPIEPPPDLRSEMYDEDNENEENFFYTRSYADFLEG-L-KERKLLNHPRVE----- 82 (364)
Q Consensus 11 ~~~~~~~~~~~~-~~~~~~ep~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~-l-~~~~~~~~~~~~----- 82 (364)
|--|.+|+++|. .+++.|+|-.+++++|....+.++|....+...........-...+. . .....+.+++|.
T Consensus 25 e~G~~~v~~eD~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~DW~~~wk~ 104 (300)
T COG2264 25 EAGAVGVAIEDAKLDTPSFEPVFGEPRLWDGVKVKALFPADTDLALLLAELEALLALLELFAHVIEQEEDEEDWEREWKK 104 (300)
T ss_pred hcCcceeeeecccccCcccccccCCCcccccceeEeeecccchHHHHHHHHHHHhcccccccceeEeecChHHHHHHHHh
Confidence 335789999999 58999999999999999999999999987654332211110000000 0 112234577774
Q ss_pred --HHHHhCCCCCccCCCcc--------ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHH
Q psy7830 83 --EAFYAVRRADFINVKPK--------FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAK 152 (364)
Q Consensus 83 --~a~~~v~R~~~~p~~~~--------~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~l 152 (364)
.|++...|.+++|+|.. ..-.|++++||+|.|+ ++..|+++|.++.++|.+|||+|||||.+++++
T Consensus 105 ~~~P~rig~~f~I~Psw~~~~~~~~~~~i~lDPGlAFGTG~Hp----TT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa 180 (300)
T COG2264 105 YFHPVRIGERFVIVPSWREYPEPSDELNIELDPGLAFGTGTHP----TTSLCLEALEKLLKKGKTVLDVGCGSGILAIAA 180 (300)
T ss_pred cCCcEEeeeeEEECCCCccCCCCCCceEEEEccccccCCCCCh----hHHHHHHHHHHhhcCCCEEEEecCChhHHHHHH
Confidence 45677888999999974 3567999999999999 999999999999999999999999999999999
Q ss_pred Hcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChH---HHHHHHHhccCC
Q psy7830 153 EWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTT---EVSKTILSQLKP 226 (364)
Q Consensus 153 a~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~---~l~~~l~~~Lkp 226 (364)
+++ +|+|+|+||.+++.|++|+..|. +.. .++....+..... ..++||+|++|...+ .+.+.+.+.|||
T Consensus 181 ~kLGA~~v~g~DiDp~AV~aa~eNa~~N~---v~~-~~~~~~~~~~~~~-~~~~~DvIVANILA~vl~~La~~~~~~lkp 255 (300)
T COG2264 181 AKLGAKKVVGVDIDPQAVEAARENARLNG---VEL-LVQAKGFLLLEVP-ENGPFDVIVANILAEVLVELAPDIKRLLKP 255 (300)
T ss_pred HHcCCceEEEecCCHHHHHHHHHHHHHcC---Cch-hhhcccccchhhc-ccCcccEEEehhhHHHHHHHHHHHHHHcCC
Confidence 999 89999999999999999999865 221 1223333333222 236899999999765 467899999999
Q ss_pred CcEEEEEEcC
Q psy7830 227 NGRIVAPVGN 236 (364)
Q Consensus 227 GG~Lvi~~~~ 236 (364)
||++++|=--
T Consensus 256 gg~lIlSGIl 265 (300)
T COG2264 256 GGRLILSGIL 265 (300)
T ss_pred CceEEEEeeh
Confidence 9999997643
No 9
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.91 E-value=8.2e-25 Score=207.31 Aligned_cols=212 Identities=21% Similarity=0.160 Sum_probs=116.9
Q ss_pred eeeEEEEEecC---CCCCCCCCCCCCCCCCcceeeccCCCccchhhhcccHHH-HHHHHHHHHHcCCCCCHHHHH-----
Q psy7830 13 CVLAVFFILVS---RGQGWKPDPGMPIEPPPDLRSEMYDEDNENEENFFYTRS-YADFLEGLKERKLLNHPRVEE----- 83 (364)
Q Consensus 13 ~~~~~~~~~~~---~~~~~ep~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~----- 83 (364)
-+.+|..+|.. ++++|||.++..+.|....+.++|+...+...+...... ...+...-.....+.+++|..
T Consensus 25 G~~gv~~ed~~~~~~~~~~e~~~~~~~~~~~~~v~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~dW~~~Wk~~ 104 (295)
T PF06325_consen 25 GANGVEIEDPDLLDEEPIFEPDPDEEPLWDEVRVKAYFPEDEDIEELLAALRELLENLGEIEIEIEEIEEEDWEEAWKKY 104 (295)
T ss_dssp ---------------------------------------------------------------EEEE--HHCHHHHHHHH
T ss_pred CCCEEEEEeccccccCcccccCCCCcccccCceEEEEeCCCcChHHHHHHHHHHhhccCCCceEEEEeccccchHHHHhc
Confidence 35677888887 889999999988889999999999987655543322111 111111112333456677744
Q ss_pred --HHHhCCCCCccCCCcc--------ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHH
Q psy7830 84 --AFYAVRRADFINVKPK--------FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKE 153 (364)
Q Consensus 84 --a~~~v~R~~~~p~~~~--------~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la 153 (364)
|+...+|.+++|+|.. ..+.|++++||+|.|. ++..|+++|..+..+|++|||+|||||.+++.++
T Consensus 105 ~~P~~vg~~~~I~P~w~~~~~~~~~~~I~idPg~AFGTG~H~----TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~ 180 (295)
T PF06325_consen 105 FKPIRVGDRLVIVPSWEEYPEPPDEIVIEIDPGMAFGTGHHP----TTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAA 180 (295)
T ss_dssp ---EEECTTEEEEETT----SSTTSEEEEESTTSSS-SSHCH----HHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHH
T ss_pred CccEEECCcEEEECCCcccCCCCCcEEEEECCCCcccCCCCH----HHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHH
Confidence 4556778899999864 4578999999999999 9999999999989999999999999999999999
Q ss_pred cc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChHH---HHHHHHhccCCC
Q psy7830 154 WL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTE---VSKTILSQLKPN 227 (364)
Q Consensus 154 ~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~---l~~~l~~~LkpG 227 (364)
++ +|+|+|+||.+++.|++|+..|. +.. ++.+. ...+.. .++||+|++|....- +.+.+.+.|+||
T Consensus 181 klGA~~v~a~DiDp~Av~~a~~N~~~N~---~~~-~~~v~--~~~~~~--~~~~dlvvANI~~~vL~~l~~~~~~~l~~~ 252 (295)
T PF06325_consen 181 KLGAKKVVAIDIDPLAVEAARENAELNG---VED-RIEVS--LSEDLV--EGKFDLVVANILADVLLELAPDIASLLKPG 252 (295)
T ss_dssp HTTBSEEEEEESSCHHHHHHHHHHHHTT----TT-CEEES--CTSCTC--CS-EEEEEEES-HHHHHHHHHHCHHHEEEE
T ss_pred HcCCCeEEEecCCHHHHHHHHHHHHHcC---CCe-eEEEE--Eecccc--cccCCEEEECCCHHHHHHHHHHHHHhhCCC
Confidence 98 89999999999999999999865 432 55442 211221 378999999998764 557888999999
Q ss_pred cEEEEEEcC
Q psy7830 228 GRIVAPVGN 236 (364)
Q Consensus 228 G~Lvi~~~~ 236 (364)
|+|++|=--
T Consensus 253 G~lIlSGIl 261 (295)
T PF06325_consen 253 GYLILSGIL 261 (295)
T ss_dssp EEEEEEEEE
T ss_pred CEEEEcccc
Confidence 999997643
No 10
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.90 E-value=5.5e-22 Score=190.66 Aligned_cols=197 Identities=26% Similarity=0.352 Sum_probs=164.0
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCcc--ccccCCCcee-cCC---CccChHHHHHHHHHHHhccCCCCC
Q psy7830 63 YADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPK--FGFCDIPYAF-ANQ---VVMEPPSYIARCLEQLVDHLQNGS 136 (364)
Q Consensus 63 ~~~l~~~l~~~~~~~~~~~~~a~~~v~R~~~~p~~~~--~~y~d~~l~i-g~g---~~~s~P~~~a~~l~~L~~~l~~g~ 136 (364)
++.|++.+...| +.| .++++|..+||+.|+|..+. .+|.|..+++ .+| +++++|.+.+.+++.+. +++++
T Consensus 7 ~~~lv~~l~~~g-v~d-~vl~a~~~vpRe~Fvp~~~~~~~aY~D~~l~~~~~g~~~~~~~~p~l~a~ll~~L~--i~~g~ 82 (322)
T PRK13943 7 REKLFWILKKYG-ISD-HIAKAFLEVPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKGM 82 (322)
T ss_pred HHHHHHHHHHcC-CcH-HHHHHHHcCCHHHcCCcchhhhhccCCCcccccCCCcccccCCcHHHHHHHHHhcC--CCCCC
Confidence 467999998888 667 99999999999999998752 6899998876 555 57889999999999886 78899
Q ss_pred EEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEcc
Q psy7830 137 RVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGA 211 (364)
Q Consensus 137 ~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~ 211 (364)
+|||+|||+|+++..+++. .|+++|+++.+++.|++++.. .+.+++.++.+|+.......++||+|+++.
T Consensus 83 ~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~-----~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~ 157 (322)
T PRK13943 83 RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRR-----LGIENVIFVCGDGYYGVPEFAPYDVIFVTV 157 (322)
T ss_pred EEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHH-----cCCCcEEEEeCChhhcccccCCccEEEECC
Confidence 9999999999999999875 599999999999999999987 334689999999876655556899999999
Q ss_pred ChHHHHHHHHhccCCCcEEEEEEcCC--CcceEEEEEecCCCceeEEEeeceeEEeccCc
Q psy7830 212 GTTEVSKTILSQLKPNGRIVAPVGNV--WRQNLSVIDKGPDGSISSKILRRVSSDFLCNL 269 (364)
Q Consensus 212 ~~~~l~~~l~~~LkpGG~Lvi~~~~~--~~~~l~~~~~~~~g~~~~~~l~~~~f~~l~~~ 269 (364)
....++..+.+.|+|||+++++.... ..+......+. ++.+.....+.++|++..+.
T Consensus 158 g~~~ip~~~~~~LkpgG~Lvv~~~~~l~~~~~~~~~~r~-~~~~~~~~~~~~~~l~~~G~ 216 (322)
T PRK13943 158 GVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKK-DPYLVGNYKLETRFIKAGGN 216 (322)
T ss_pred chHHhHHHHHHhcCCCCEEEEEeCCccCCCCceEEEEec-CCCceEEEEEEeeEEcccch
Confidence 88889999999999999999988653 34455555555 44477778888889888654
No 11
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.85 E-value=8e-21 Score=180.88 Aligned_cols=209 Identities=20% Similarity=0.133 Sum_probs=153.3
Q ss_pred eeeeEEEEEecCCCCCCCC-CCCCCCCCCcceeeccCCCccchhhhcccHHHHHHHHHHH--------HHcCCCCCHHHH
Q psy7830 12 RCVLAVFFILVSRGQGWKP-DPGMPIEPPPDLRSEMYDEDNENEENFFYTRSYADFLEGL--------KERKLLNHPRVE 82 (364)
Q Consensus 12 ~~~~~~~~~~~~~~~~~ep-~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l--------~~~~~~~~~~~~ 82 (364)
--|.+|+++|..+.+.|+| .|+..+.|......+.|.......+ ......... .....+.+++|.
T Consensus 23 ~g~~gv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~dW~ 96 (288)
T TIGR00406 23 AGAVGVTFEDDKDTIYFEPHLPGEKRLWGNLDVIALFDAETDMNN------SVIPLLEAFCLDLGRNHKIEFDEFSKDWE 96 (288)
T ss_pred cCCCEEEEEcCCCCceecCCCCCCccEEEEEEeeccCcccchHHH------HHHHHHHhcccCCCcceeEEeecchhhHH
Confidence 3478999999999888988 7787777877777777765431110 000111000 111123367775
Q ss_pred HHH-------HhCCCCCccCCCcc--------ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccH
Q psy7830 83 EAF-------YAVRRADFINVKPK--------FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGY 147 (364)
Q Consensus 83 ~a~-------~~v~R~~~~p~~~~--------~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~ 147 (364)
+.. ...+|.+++|+|.. ....|++++||+|.|. ++..|++++.....++++|||+|||+|+
T Consensus 97 ~~w~~~~~p~~~g~~~~i~p~w~~~~~~~~~~~i~ldpg~aFgtG~h~----tt~l~l~~l~~~~~~g~~VLDvGcGsG~ 172 (288)
T TIGR00406 97 RAWKDNFHPVQFGKRFWICPSWRDVPSDEDALIIMLDPGLAFGTGTHP----TTSLCLEWLEDLDLKDKNVIDVGCGSGI 172 (288)
T ss_pred HHHHHhCCCEEEcCeEEEECCCcCCCCCCCcEEEEECCCCcccCCCCH----HHHHHHHHHHhhcCCCCEEEEeCCChhH
Confidence 554 45567888888743 4568999999999999 8889999888777889999999999999
Q ss_pred HHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChH---HHHHHHH
Q psy7830 148 MATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTT---EVSKTIL 221 (364)
Q Consensus 148 ~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~---~l~~~l~ 221 (364)
++..+++. +|+++|+|+.+++.|++|+..+. +. .++.+...+.... ..++||+|++|...+ .+++.+.
T Consensus 173 lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~---~~-~~~~~~~~~~~~~--~~~~fDlVvan~~~~~l~~ll~~~~ 246 (288)
T TIGR00406 173 LSIAALKLGAAKVVGIDIDPLAVESARKNAELNQ---VS-DRLQVKLIYLEQP--IEGKADVIVANILAEVIKELYPQFS 246 (288)
T ss_pred HHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC---CC-cceEEEecccccc--cCCCceEEEEecCHHHHHHHHHHHH
Confidence 99888876 89999999999999999998743 22 3566666653322 246899999998776 4668899
Q ss_pred hccCCCcEEEEEEcC
Q psy7830 222 SQLKPNGRIVAPVGN 236 (364)
Q Consensus 222 ~~LkpGG~Lvi~~~~ 236 (364)
+.|||||+++++...
T Consensus 247 ~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 247 RLVKPGGWLILSGIL 261 (288)
T ss_pred HHcCCCcEEEEEeCc
Confidence 999999999987543
No 12
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.70 E-value=9.4e-17 Score=149.93 Aligned_cols=144 Identities=22% Similarity=0.223 Sum_probs=112.5
Q ss_pred CCCHHHHHHHH-------hCCCCCccCCCcc-------ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEE
Q psy7830 76 LNHPRVEEAFY-------AVRRADFINVKPK-------FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDI 141 (364)
Q Consensus 76 ~~~~~~~~a~~-------~v~R~~~~p~~~~-------~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDi 141 (364)
+.+++|..... ..+|..+.|+|.. ....|++++||+|.|. ++..|++.+.....++.+|||+
T Consensus 51 ~~~~dw~~~w~~~~~p~~~g~~~~i~p~~~~~~~~~~~~i~i~p~~afgtg~h~----tt~~~l~~l~~~~~~~~~VLDi 126 (250)
T PRK00517 51 VEDEDWEREWKKYFHPIRIGDRLWIVPSWEDPPDPDEINIELDPGMAFGTGTHP----TTRLCLEALEKLVLPGKTVLDV 126 (250)
T ss_pred cCchhHHHHHHHHCCCEEEcCCEEEECCCcCCCCCCeEEEEECCCCccCCCCCH----HHHHHHHHHHhhcCCCCEEEEe
Confidence 56777766543 4456777787753 3457899999999998 7888888888767889999999
Q ss_pred CCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChH---H
Q psy7830 142 GSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTT---E 215 (364)
Q Consensus 142 GcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~---~ 215 (364)
|||+|++++.+++. +|+++|+|+.+++.|++|+..+. +. .++.+..+| .+||+|++|...+ .
T Consensus 127 GcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~---~~-~~~~~~~~~--------~~fD~Vvani~~~~~~~ 194 (250)
T PRK00517 127 GCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNG---VE-LNVYLPQGD--------LKADVIVANILANPLLE 194 (250)
T ss_pred CCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC---CC-ceEEEccCC--------CCcCEEEEcCcHHHHHH
Confidence 99999999988877 69999999999999999998743 21 234333322 2799999987655 3
Q ss_pred HHHHHHhccCCCcEEEEEEc
Q psy7830 216 VSKTILSQLKPNGRIVAPVG 235 (364)
Q Consensus 216 l~~~l~~~LkpGG~Lvi~~~ 235 (364)
+++.+.+.|||||+++++-.
T Consensus 195 l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 195 LAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred HHHHHHHhcCCCcEEEEEEC
Confidence 56789999999999999753
No 13
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.65 E-value=1e-15 Score=140.58 Aligned_cols=101 Identities=23% Similarity=0.294 Sum_probs=89.1
Q ss_pred CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830 132 LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI 207 (364)
Q Consensus 132 l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I 207 (364)
..+|.+|||+|||||-++..+++. +|+++|+|+.|++.+++++.. .+..+++++.+|++++++++++||+|
T Consensus 49 ~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~-----~~~~~i~fv~~dAe~LPf~D~sFD~v 123 (238)
T COG2226 49 IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKK-----KGVQNVEFVVGDAENLPFPDNSFDAV 123 (238)
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhc-----cCccceEEEEechhhCCCCCCccCEE
Confidence 458999999999999999999988 999999999999999999987 23346999999999999999999999
Q ss_pred EEccChHH------HHHHHHhccCCCcEEEEEEcCC
Q psy7830 208 FFGAGTTE------VSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 208 i~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
.+...+++ .++++.|+|||||++++-.-..
T Consensus 124 t~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~ 159 (238)
T COG2226 124 TISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK 159 (238)
T ss_pred EeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 98877754 6899999999999988765443
No 14
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.63 E-value=3e-15 Score=121.66 Aligned_cols=96 Identities=30% Similarity=0.397 Sum_probs=78.9
Q ss_pred CCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC-CCCCCCCCCeeEEE
Q psy7830 134 NGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA-RWGHAEGGPYDVIF 208 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~-~~~~~~~~~fD~Ii 208 (364)
|+.+|||+|||+|.++..+++. +|+++|+|+.+++.+++++.... . .++++++++|+ .... ..++||+|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~-~~~i~~~~~d~~~~~~-~~~~~D~v~ 75 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG---L-SDRITFVQGDAEFDPD-FLEPFDLVI 75 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT---T-TTTEEEEESCCHGGTT-TSSCEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC---C-CCCeEEEECccccCcc-cCCCCCEEE
Confidence 6889999999999999999993 99999999999999999995411 1 36999999999 3222 245799999
Q ss_pred Ecc-ChH---------HHHHHHHhccCCCcEEEEEE
Q psy7830 209 FGA-GTT---------EVSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 209 ~~~-~~~---------~l~~~l~~~LkpGG~Lvi~~ 234 (364)
++. ..+ .+++.+.+.|+|||++++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 76 CSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp ECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 988 322 24789999999999999864
No 15
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.63 E-value=2.3e-15 Score=138.99 Aligned_cols=107 Identities=24% Similarity=0.309 Sum_probs=79.5
Q ss_pred HHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830 123 RCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG 197 (364)
Q Consensus 123 ~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~ 197 (364)
.+++.+. ..+|.+|||+|||||.++..+++. +|+++|+|+.|++.|++++.. .+..+++++++|+.++
T Consensus 38 ~~~~~~~--~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~-----~~~~~i~~v~~da~~l 110 (233)
T PF01209_consen 38 KLIKLLG--LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKR-----EGLQNIEFVQGDAEDL 110 (233)
T ss_dssp HHHHHHT----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHH-----TT--SEEEEE-BTTB-
T ss_pred HHHhccC--CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHh-----hCCCCeeEEEcCHHHh
Confidence 3445444 678999999999999999998875 899999999999999999887 2235999999999999
Q ss_pred CCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcC
Q psy7830 198 HAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 198 ~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
+.++++||+|.+...++. .++++.++|||||++++....
T Consensus 111 p~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~ 155 (233)
T PF01209_consen 111 PFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFS 155 (233)
T ss_dssp -S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeecc
Confidence 888899999998777653 678999999999999875543
No 16
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.62 E-value=5e-16 Score=144.85 Aligned_cols=189 Identities=14% Similarity=0.044 Sum_probs=124.7
Q ss_pred HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830 120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG 197 (364)
Q Consensus 120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~ 197 (364)
+...+++.+. ..++.+|||+|||+|.++..++.. +|+++|+|+.|++.++++.. ...++++|+...
T Consensus 30 ~a~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~----------~~~~~~~d~~~~ 97 (251)
T PRK10258 30 SADALLAMLP--QRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA----------ADHYLAGDIESL 97 (251)
T ss_pred HHHHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC----------CCCEEEcCcccC
Confidence 4455555554 245789999999999999988877 99999999999999988742 346788998877
Q ss_pred CCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcCCC-cceEEEEEecCCCceeEEEeeceeEEeccCcc
Q psy7830 198 HAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGNVW-RQNLSVIDKGPDGSISSKILRRVSSDFLCNLE 270 (364)
Q Consensus 198 ~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~~~-~~~l~~~~~~~~g~~~~~~l~~~~f~~l~~~~ 270 (364)
+..+++||+|+++..+++ ++.++.+.|||||.++++....+ ..++...+...++..+ ...|.+.....
T Consensus 98 ~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~~~~~~~-----~~~~~~~~~l~ 172 (251)
T PRK10258 98 PLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERPH-----ANRFLPPDAIE 172 (251)
T ss_pred cCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHHhccCCc-----cccCCCHHHHH
Confidence 665678999999988765 57899999999999999886543 2222211111111111 12333333322
Q ss_pred cccCCCCCCCccCCCccccceecCCCCCCC-----CCccccCCCCcccCCCCCCCccccCCCChhhhh
Q psy7830 271 YQLHPDVFPQPLNTSAEDTYTKMFPPPPGV-----RPRAVTFPLSSQERSPGNGSTKKYEFLPESTED 333 (364)
Q Consensus 271 ~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 333 (364)
..+.. +.... ..+..+..|+++... ..|++.... .+..+..+++.++++.+.|..
T Consensus 173 ~~l~~--~~~~~---~~~~~~~~f~~~~~~l~~lk~~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 232 (251)
T PRK10258 173 QALNG--WRYQH---HIQPITLWFDDALSAMRSLKGIGATHLHE---GRDPRILTRSQLQRLQLAWPQ 232 (251)
T ss_pred HHHHh--CCcee---eeeEEEEECCCHHHHHHHHHHhCCCCCCC---CCCCCCCcHHHHHHHHHhccc
Confidence 21222 22111 245577778887653 267766643 345667888888887777654
No 17
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.59 E-value=3.6e-15 Score=149.52 Aligned_cols=178 Identities=18% Similarity=0.116 Sum_probs=123.4
Q ss_pred ccCCCccchhhhcccHHHHHHHHHHHHHcCCCCCHHHHHHH-HhCCCCCccCCCccccccCCCceecCCCccChHHHHHH
Q psy7830 45 EMYDEDNENEENFFYTRSYADFLEGLKERKLLNHPRVEEAF-YAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIAR 123 (364)
Q Consensus 45 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~a~-~~v~R~~~~p~~~~~~y~d~~l~ig~g~~~s~P~~~a~ 123 (364)
+++..++...|+|+.+.+++++.+.|.+.|....+.-..+. ..++... .+.+....|.++.+.+++.+++ ++..
T Consensus 157 ~~~~~~~~~~RvN~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~Qd~~s~----~~~~ 231 (431)
T PRK14903 157 WNQEPLPTMLRVNSLAITREEVIKILAEEGTEAVPGKHSPFSLIVRKLG-VNMNDSRVIKDGLATVQGESSQ----IVPL 231 (431)
T ss_pred HhcCCCCeeEEeeCCcCCHHHHHHHHHHCCCeeEECCCCCceEEEcCCC-CCcccChHHHCCeEEEECHHHH----HHHH
Confidence 33444555568899888888898888777732111111000 0111100 0111114677777777765443 3332
Q ss_pred HHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC
Q psy7830 124 CLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH 198 (364)
Q Consensus 124 ~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~ 198 (364)
.+. +.+|.+|||+|||+|+.+..++.. +|+++|+++.+++.+++|+++ .+..++++..+|+....
T Consensus 232 ---~l~--~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r-----~g~~~v~~~~~Da~~l~ 301 (431)
T PRK14903 232 ---LME--LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKR-----LKLSSIEIKIADAERLT 301 (431)
T ss_pred ---HhC--CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH-----cCCCeEEEEECchhhhh
Confidence 333 688999999999999999988875 899999999999999999988 44567999999987654
Q ss_pred -CCCCCeeEEEEccChH----------------------------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830 199 -AEGGPYDVIFFGAGTT----------------------------EVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 199 -~~~~~fD~Ii~~~~~~----------------------------~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
...++||.|+++.+|. .++..+.+.|||||+|+.++.+-
T Consensus 302 ~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 302 EYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred hhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 2246799999988772 14678889999999999988764
No 18
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.59 E-value=8.5e-15 Score=130.73 Aligned_cols=111 Identities=23% Similarity=0.229 Sum_probs=91.3
Q ss_pred CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830 132 LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI 207 (364)
Q Consensus 132 l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I 207 (364)
++++.+|||+|||+|..+..++.. +|+++|+++.+++.|+++++.+ +.++++++.+|+.+... .++||+|
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~-----~l~~i~~~~~d~~~~~~-~~~fDlV 116 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAEL-----GLKNVTVVHGRAEEFGQ-EEKFDVV 116 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHc-----CCCCEEEEeccHhhCCC-CCCccEE
Confidence 456899999999999999988864 9999999999999999999883 34579999999987655 5689999
Q ss_pred EEccC--hHHHHHHHHhccCCCcEEEEEEcCCCcceEEEEEec
Q psy7830 208 FFGAG--TTEVSKTILSQLKPNGRIVAPVGNVWRQNLSVIDKG 248 (364)
Q Consensus 208 i~~~~--~~~l~~~l~~~LkpGG~Lvi~~~~~~~~~l~~~~~~ 248 (364)
+++.. .+.+++.+.+.|||||++++..+.....++..+.+.
T Consensus 117 ~~~~~~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~ 159 (187)
T PRK00107 117 TSRAVASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKA 159 (187)
T ss_pred EEccccCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHh
Confidence 99754 357888999999999999999877654444444443
No 19
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.57 E-value=5.1e-14 Score=123.53 Aligned_cols=119 Identities=26% Similarity=0.290 Sum_probs=104.0
Q ss_pred CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE
Q psy7830 112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL 187 (364)
Q Consensus 112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v 187 (364)
|.-++.+.+-+..+..|. +.+|++++|||||||..++.++.. +|+++|.++++++..++|+++ ++.+|+
T Consensus 14 ~~p~TK~EIRal~ls~L~--~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~-----fg~~n~ 86 (187)
T COG2242 14 GGPMTKEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAAR-----FGVDNL 86 (187)
T ss_pred CCCCcHHHHHHHHHHhhC--CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHH-----hCCCcE
Confidence 445788888899999998 899999999999999999999944 999999999999999999999 667899
Q ss_pred EEEEcCCCCCCCCCCCeeEEEEccC--hHHHHHHHHhccCCCcEEEEEEcCC
Q psy7830 188 EFILKDARWGHAEGGPYDVIFFGAG--TTEVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 188 ~~~~~D~~~~~~~~~~fD~Ii~~~~--~~~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
+++.+|+.+......+||.||.... .+.+++.+...|||||+||+..-.-
T Consensus 87 ~vv~g~Ap~~L~~~~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 87 EVVEGDAPEALPDLPSPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred EEEeccchHhhcCCCCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEeecH
Confidence 9999999876654447999999776 3578999999999999999987654
No 20
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.57 E-value=5.6e-15 Score=139.03 Aligned_cols=167 Identities=21% Similarity=0.193 Sum_probs=116.8
Q ss_pred hhcccHHHHHHHHHHHHHcCCCCCHHHHHH-HHhCCCCCccCCCccccccCCCceecCCCccChHHHHHHHHHHHhccCC
Q psy7830 55 ENFFYTRSYADFLEGLKERKLLNHPRVEEA-FYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQ 133 (364)
Q Consensus 55 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~a-~~~v~R~~~~p~~~~~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~ 133 (364)
|+|+.+.+++++.+.|.+.|....+ +..+ ...+.....- ......|.++.+.+++.+++ ++.. .|. ++
T Consensus 2 RvN~lk~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~G~~~~qd~~s~----~~~~---~l~--~~ 70 (264)
T TIGR00446 2 RVNTLKISVADLLQRLENRGVTLIP-WCEEGFFEVNESPLP-IGSTPEYLSGLYYIQEASSM----IPPL---ALE--PD 70 (264)
T ss_pred eecCCCCCHHHHHHHHHhCCCceee-cCCCceEEEeCCCCC-cccChhHhCCeEEEECHHHH----HHHH---HhC--CC
Confidence 6788888899999998887742211 1100 0011100000 00014577777777765443 3333 233 68
Q ss_pred CCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830 134 NGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF 208 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii 208 (364)
+|.+|||+|||+|..+..++.. .|+++|+++.+++.+++|+++ .+..++.+...|+.......+.||+|+
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~-----~g~~~v~~~~~D~~~~~~~~~~fD~Vl 145 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINR-----CGVLNVAVTNFDGRVFGAAVPKFDAIL 145 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH-----cCCCcEEEecCCHHHhhhhccCCCEEE
Confidence 8999999999999999988775 899999999999999999988 334689999999876543345799999
Q ss_pred EccChH----------------------------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830 209 FGAGTT----------------------------EVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 209 ~~~~~~----------------------------~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
++.+|. .++..+.++|||||+|+.++-+-
T Consensus 146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 987653 15678889999999999887654
No 21
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.55 E-value=5.2e-14 Score=121.26 Aligned_cols=98 Identities=26% Similarity=0.329 Sum_probs=83.0
Q ss_pred CCCCEEEEECCCccHHHHHHH-cc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC--CCCCCee
Q psy7830 133 QNGSRVLDIGSGQGYMATAKE-WL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH--AEGGPYD 205 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la-~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~--~~~~~fD 205 (364)
+.+.+|||+|||+|.++..++ .. +++|+|+++.+++.|+++++. .+.+++++.++|+.+.. .. +.||
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~-----~~~~ni~~~~~d~~~l~~~~~-~~~D 75 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKE-----LGLDNIEFIQGDIEDLPQELE-EKFD 75 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHH-----TTSTTEEEEESBTTCGCGCSS-TTEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccc-----ccccccceEEeehhccccccC-CCee
Confidence 467899999999999999999 33 999999999999999999887 34569999999999854 22 6899
Q ss_pred EEEEccChHH------HHHHHHhccCCCcEEEEEEcC
Q psy7830 206 VIFFGAGTTE------VSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 206 ~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
+|+++.++++ +++.+.+.|++||++++....
T Consensus 76 ~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 76 IIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999877643 678999999999999987654
No 22
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.55 E-value=1.3e-13 Score=113.61 Aligned_cols=111 Identities=25% Similarity=0.298 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC
Q psy7830 118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD 193 (364)
Q Consensus 118 P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D 193 (364)
..+...+++.+. +.++.+|||+|||+|..+..+++. +|+++|+++.+++.+++++.. .+..+++++.+|
T Consensus 5 ~~~~~~~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~~~~ 77 (124)
T TIGR02469 5 REVRALTLSKLR--LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARR-----FGVSNIVIVEGD 77 (124)
T ss_pred HHHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHH-----hCCCceEEEecc
Confidence 345566677665 567889999999999999999875 899999999999999999887 334578999988
Q ss_pred CCCCC-CCCCCeeEEEEccCh---HHHHHHHHhccCCCcEEEEEEc
Q psy7830 194 ARWGH-AEGGPYDVIFFGAGT---TEVSKTILSQLKPNGRIVAPVG 235 (364)
Q Consensus 194 ~~~~~-~~~~~fD~Ii~~~~~---~~l~~~l~~~LkpGG~Lvi~~~ 235 (364)
+.... ....+||.|++.... ..+++.+.+.|||||.+++.+.
T Consensus 78 ~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 78 APEALEDSLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred ccccChhhcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEec
Confidence 76432 223589999987644 3478999999999999998763
No 23
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.55 E-value=7.2e-14 Score=131.30 Aligned_cols=103 Identities=23% Similarity=0.227 Sum_probs=85.1
Q ss_pred CCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHh-cCCCCCCCCCEEEEEcCCCCCCCCCCCee
Q psy7830 132 LQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKI-SRPDLLQSKTLEFILKDARWGHAEGGPYD 205 (364)
Q Consensus 132 l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~-~~~~~l~~~~v~~~~~D~~~~~~~~~~fD 205 (364)
+.++.+|||+|||+|.++..+++. +|+|+|+|++|++.|+++... .. ...++++++++|+...+.++++||
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~---~~~~~i~~~~~d~~~lp~~~~sfD 147 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK---SCYKNIEWIEGDATDLPFDDCYFD 147 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh---ccCCCeEEEEcccccCCCCCCCEe
Confidence 678999999999999999888763 899999999999999887542 10 113589999999998877778999
Q ss_pred EEEEccChHH------HHHHHHhccCCCcEEEEEEcCC
Q psy7830 206 VIFFGAGTTE------VSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 206 ~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
+|+++..+++ ++.++.++|||||++++.....
T Consensus 148 ~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 148 AITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred EEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence 9998877654 5789999999999999876543
No 24
>PLN02244 tocopherol O-methyltransferase
Probab=99.55 E-value=7.2e-14 Score=136.17 Aligned_cols=111 Identities=19% Similarity=0.214 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhccC-----CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEE
Q psy7830 119 SYIARCLEQLVDHL-----QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFI 190 (364)
Q Consensus 119 ~~~a~~l~~L~~~l-----~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~ 190 (364)
.+...+++++. + .++.+|||||||+|.++..+++. +|+|+|+++.+++.+++++.... + .++++++
T Consensus 100 ~~~~~~l~~~~--~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g---~-~~~v~~~ 173 (340)
T PLN02244 100 RMIEESLAWAG--VPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQG---L-SDKVSFQ 173 (340)
T ss_pred HHHHHHHHhcC--CCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcC---C-CCceEEE
Confidence 35556666654 3 57889999999999999999875 99999999999999999887622 1 2479999
Q ss_pred EcCCCCCCCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEc
Q psy7830 191 LKDARWGHAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVG 235 (364)
Q Consensus 191 ~~D~~~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~ 235 (364)
.+|+.+.+..+++||+|++....++ ++.++.++|||||++++...
T Consensus 174 ~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 174 VADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred EcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9999887766789999999877654 56899999999999998764
No 25
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.54 E-value=1.3e-14 Score=145.84 Aligned_cols=186 Identities=17% Similarity=0.087 Sum_probs=125.9
Q ss_pred CCCCCCcceeeccCC-------------CccchhhhcccHHHHHHHHHHHHHcCCCCCHH-HHHHHHhCCC--CCccCCC
Q psy7830 34 MPIEPPPDLRSEMYD-------------EDNENEENFFYTRSYADFLEGLKERKLLNHPR-VEEAFYAVRR--ADFINVK 97 (364)
Q Consensus 34 ~~~~w~~~~~~~l~~-------------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~a~~~v~R--~~~~p~~ 97 (364)
..|.|--.++...|+ .+....|+|+.+.+++.+.+.|...|....+. +......++. ..+...
T Consensus 148 s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~- 226 (434)
T PRK14901 148 SFPDWLVKLWLEWLGLEEAEQLCKWFNQPPSLDLRINPLRTSLEEVQAALAEAGITATPIPGLPQGLRLTGNPGSIRQL- 226 (434)
T ss_pred CCcHHHHHHHHHHhCHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHCCCceEECCCCCCeEEecCCCCccccC-
Confidence 346675444444444 44445588998888888988887777422111 1100011111 001101
Q ss_pred ccccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHH
Q psy7830 98 PKFGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLK 172 (364)
Q Consensus 98 ~~~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~ 172 (364)
..|.++.+.+++..+. .+...+. +++|++|||+|||+|+.+..++.. +|+++|+++.+++.+++
T Consensus 227 --~~f~~g~~~~qd~~s~-------l~~~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~ 295 (434)
T PRK14901 227 --PGYEEGWWTVQDRSAQ-------LVAPLLD--PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQE 295 (434)
T ss_pred --hHHhCCeEEEECHHHH-------HHHHHhC--CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHH
Confidence 3456666666654322 2333343 678999999999999999988875 79999999999999999
Q ss_pred HHHhcCCCCCCCCCEEEEEcCCCCCC----CCCCCeeEEEEccChH----------------------------HHHHHH
Q psy7830 173 NIKISRPDLLQSKTLEFILKDARWGH----AEGGPYDVIFFGAGTT----------------------------EVSKTI 220 (364)
Q Consensus 173 ~~~~~~~~~l~~~~v~~~~~D~~~~~----~~~~~fD~Ii~~~~~~----------------------------~l~~~l 220 (364)
|+++ .+..+++++.+|+.... ...++||.|+++.+|. .++.++
T Consensus 296 n~~r-----~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a 370 (434)
T PRK14901 296 NAQR-----LGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESL 370 (434)
T ss_pred HHHH-----cCCCeEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHH
Confidence 9988 44568999999987654 2235799999987652 256788
Q ss_pred HhccCCCcEEEEEEcC
Q psy7830 221 LSQLKPNGRIVAPVGN 236 (364)
Q Consensus 221 ~~~LkpGG~Lvi~~~~ 236 (364)
.+.|||||+||.++-.
T Consensus 371 ~~~lkpgG~lvystcs 386 (434)
T PRK14901 371 APLLKPGGTLVYATCT 386 (434)
T ss_pred HHhcCCCCEEEEEeCC
Confidence 9999999999987744
No 26
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.54 E-value=3.6e-14 Score=110.99 Aligned_cols=86 Identities=30% Similarity=0.350 Sum_probs=73.7
Q ss_pred EEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChHH
Q psy7830 139 LDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTE 215 (364)
Q Consensus 139 LDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~ 215 (364)
||+|||+|..+..+++. +|+++|+++.+++.++++... .++.+..+|+..++.++++||+|+++..+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~--------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~ 72 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN--------EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHH 72 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT--------STEEEEESBTTSSSS-TT-EEEEEEESHGGG
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc--------cCchheeehHHhCccccccccccccccceee
Confidence 89999999999999887 999999999999999998755 3577999999999888899999999988865
Q ss_pred ------HHHHHHhccCCCcEEEE
Q psy7830 216 ------VSKTILSQLKPNGRIVA 232 (364)
Q Consensus 216 ------l~~~l~~~LkpGG~Lvi 232 (364)
+++++.++|||||++++
T Consensus 73 ~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 73 LEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccCHHHHHHHHHHHcCcCeEEeC
Confidence 57899999999999986
No 27
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.54 E-value=9.8e-14 Score=122.10 Aligned_cols=110 Identities=22% Similarity=0.299 Sum_probs=88.4
Q ss_pred HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC
Q psy7830 120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR 195 (364)
Q Consensus 120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~ 195 (364)
.+..+++.+.. .++.+|||+|||+|.++..+++. +|+++|+++.+++.+++|+..+. ..+++++..|..
T Consensus 19 ~t~lL~~~l~~--~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~-----~~~v~~~~~d~~ 91 (170)
T PF05175_consen 19 GTRLLLDNLPK--HKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNG-----LENVEVVQSDLF 91 (170)
T ss_dssp HHHHHHHHHHH--HTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTT-----CTTEEEEESSTT
T ss_pred HHHHHHHHHhh--ccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC-----cccccccccccc
Confidence 34567777774 37889999999999999999987 69999999999999999999844 345999999987
Q ss_pred CCCCCCCCeeEEEEccChH-----------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830 196 WGHAEGGPYDVIFFGAGTT-----------EVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 196 ~~~~~~~~fD~Ii~~~~~~-----------~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
.... .++||+|++|.+++ .+.....+.|||||.+++.....
T Consensus 92 ~~~~-~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~ 143 (170)
T PF05175_consen 92 EALP-DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSH 143 (170)
T ss_dssp TTCC-TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred cccc-ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecC
Confidence 6554 57899999998763 35678899999999998766543
No 28
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.52 E-value=1.5e-13 Score=126.45 Aligned_cols=108 Identities=17% Similarity=0.242 Sum_probs=88.3
Q ss_pred HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830 122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW 196 (364)
Q Consensus 122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~ 196 (364)
..++..+. ++++.+|||+|||+|..+..+++. +|+++|+++.+++.+++++... +.++++++.+|+..
T Consensus 35 ~~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~v~~~~~d~~~ 107 (231)
T TIGR02752 35 KDTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA-----GLHNVELVHGNAME 107 (231)
T ss_pred HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc-----CCCceEEEEechhc
Confidence 44555554 678999999999999999888754 8999999999999999998762 24689999999987
Q ss_pred CCCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcC
Q psy7830 197 GHAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 197 ~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
.....++||+|+++..+++ +++++.+.|+|||++++....
T Consensus 108 ~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 153 (231)
T TIGR02752 108 LPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETS 153 (231)
T ss_pred CCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECC
Confidence 6655678999998766543 678899999999999876543
No 29
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.52 E-value=3.8e-14 Score=142.15 Aligned_cols=175 Identities=21% Similarity=0.178 Sum_probs=121.1
Q ss_pred eeeccCCCccchhhhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCC--c--cccccCCCceecCCCccCh
Q psy7830 42 LRSEMYDEDNENEENFFYTRSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVK--P--KFGFCDIPYAFANQVVMEP 117 (364)
Q Consensus 42 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~a~~~v~R~~~~p~~--~--~~~y~d~~l~ig~g~~~s~ 117 (364)
++.+++..++...|+|..+.+++++.+.|...|.-..+. ...+-...++.. . ...|.++.+.+++.+++
T Consensus 162 ~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~G~~~iQd~~s~-- 234 (427)
T PRK10901 162 ILAANNQRPPMWLRVNRRHHSRDAYLALLAEAGIEAFPH-----AVGPDAIRLETPVPVHQLPGFAEGWVSVQDAAAQ-- 234 (427)
T ss_pred HHHHcCCCCCeEEEEcCCCCCHHHHHHHHHhCCCceeec-----CCCCCeEEECCCCCcccCchhhCceEEEECHHHH--
Confidence 444555555666688988888888888887766321110 001111111111 0 03566676777765433
Q ss_pred HHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC
Q psy7830 118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD 193 (364)
Q Consensus 118 P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D 193 (364)
. +...+. +.+|++|||+|||+|..+..++.. +|+++|+++.+++.+++|+++ .+. +++++++|
T Consensus 235 --~---~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~-----~g~-~~~~~~~D 301 (427)
T PRK10901 235 --L---AATLLA--PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQR-----LGL-KATVIVGD 301 (427)
T ss_pred --H---HHHHcC--CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHH-----cCC-CeEEEEcC
Confidence 3 333444 678999999999999999998876 899999999999999999988 233 47899999
Q ss_pred CCCCCC--CCCCeeEEEEccChH----------------------------HHHHHHHhccCCCcEEEEEEcC
Q psy7830 194 ARWGHA--EGGPYDVIFFGAGTT----------------------------EVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 194 ~~~~~~--~~~~fD~Ii~~~~~~----------------------------~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
+..... ..++||.|+++.++. .++..+.+.|||||++++++..
T Consensus 302 ~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 302 ARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred cccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 876432 245799999887652 2567888999999999988854
No 30
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.52 E-value=3.2e-13 Score=120.43 Aligned_cols=114 Identities=24% Similarity=0.322 Sum_probs=91.7
Q ss_pred CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE
Q psy7830 112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL 187 (364)
Q Consensus 112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v 187 (364)
...++.+.+.+.+++.+. +.++.+|||+|||+|.++..+++. +|+++|+++.+++.+++|+..+ +..++
T Consensus 11 ~~~~~~~~~r~~~~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~-----~~~~i 83 (187)
T PRK08287 11 KVPMTKEEVRALALSKLE--LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRF-----GCGNI 83 (187)
T ss_pred CCCCchHHHHHHHHHhcC--CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh-----CCCCe
Confidence 344566666677777776 678899999999999999988875 8999999999999999998873 23579
Q ss_pred EEEEcCCCCCCCCCCCeeEEEEccC---hHHHHHHHHhccCCCcEEEEEE
Q psy7830 188 EFILKDARWGHAEGGPYDVIFFGAG---TTEVSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 188 ~~~~~D~~~~~~~~~~fD~Ii~~~~---~~~l~~~l~~~LkpGG~Lvi~~ 234 (364)
+++.+|..... .++||+|+++.. +..+++.+.+.|+|||++++..
T Consensus 84 ~~~~~d~~~~~--~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 84 DIIPGEAPIEL--PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred EEEecCchhhc--CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEE
Confidence 99999875322 357999998764 3457788999999999999865
No 31
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.51 E-value=1.3e-13 Score=122.58 Aligned_cols=99 Identities=21% Similarity=0.165 Sum_probs=82.8
Q ss_pred CCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830 134 NGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF 209 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~ 209 (364)
++.+|||+|||+|.++..++.. +|+++|+++.+++.+++++++ .+.++++++.+|+.+... .++||+|++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~-----~~~~~i~~i~~d~~~~~~-~~~fD~I~s 115 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAE-----LGLNNVEIVNGRAEDFQH-EEQFDVITS 115 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH-----hCCCCeEEEecchhhccc-cCCccEEEe
Confidence 4889999999999999988754 899999999999999999887 334579999999987533 468999999
Q ss_pred ccC--hHHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830 210 GAG--TTEVSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 210 ~~~--~~~l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
+.. ...+.+.+.++|+|||++++..+...
T Consensus 116 ~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 146 (181)
T TIGR00138 116 RALASLNVLLELTLNLLKVGGYFLAYKGKKY 146 (181)
T ss_pred hhhhCHHHHHHHHHHhcCCCCEEEEEcCCCc
Confidence 862 24567888999999999999877654
No 32
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.51 E-value=1.1e-13 Score=129.62 Aligned_cols=131 Identities=25% Similarity=0.176 Sum_probs=101.7
Q ss_pred HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCC-CEEEEEcCCC
Q psy7830 120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSK-TLEFILKDAR 195 (364)
Q Consensus 120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~-~v~~~~~D~~ 195 (364)
....+++.|. +++|++|||||||.|.+++.+|+. +|+|+++|++..+.+++++.. .+.. ++++...|..
T Consensus 60 k~~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~-----~gl~~~v~v~l~d~r 132 (283)
T COG2230 60 KLDLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAA-----RGLEDNVEVRLQDYR 132 (283)
T ss_pred HHHHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHH-----cCCCcccEEEecccc
Confidence 4566666665 899999999999999999999998 999999999999999999888 3333 8999999987
Q ss_pred CCCCCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEcCCCcceEEEEEecCCCceeEEEeeceeEEe
Q psy7830 196 WGHAEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVGNVWRQNLSVIDKGPDGSISSKILRRVSSDF 265 (364)
Q Consensus 196 ~~~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~~~~~~~l~~~~~~~~g~~~~~~l~~~~f~~ 265 (364)
+.. ++||.|++...+++ .++.+.+.|+|||++++.......+... ....+..+.+++..+.|
T Consensus 133 d~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-----~~~~~i~~yiFPgG~lP 202 (283)
T COG2230 133 DFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-----RFPDFIDKYIFPGGELP 202 (283)
T ss_pred ccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-----cchHHHHHhCCCCCcCC
Confidence 664 45999999999876 5689999999999999877554321111 12234445556655555
No 33
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.50 E-value=2.4e-13 Score=122.47 Aligned_cols=103 Identities=17% Similarity=0.127 Sum_probs=82.9
Q ss_pred HHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC
Q psy7830 123 RCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE 200 (364)
Q Consensus 123 ~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~ 200 (364)
.+++.+. ..++.+|||+|||+|..+..+++. +|+++|+|+.+++.+++++... +..++++...|+.....
T Consensus 21 ~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~-----~~~~v~~~~~d~~~~~~- 92 (197)
T PRK11207 21 EVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAE-----NLDNLHTAVVDLNNLTF- 92 (197)
T ss_pred HHHHhcc--cCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc-----CCCcceEEecChhhCCc-
Confidence 3445544 456789999999999999999988 9999999999999999988772 23578899999876544
Q ss_pred CCCeeEEEEccChH--------HHHHHHHhccCCCcEEEEE
Q psy7830 201 GGPYDVIFFGAGTT--------EVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 201 ~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~ 233 (364)
.++||+|+++..++ .++..+.++|||||++++.
T Consensus 93 ~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 93 DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 35799999987754 3567999999999996553
No 34
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.50 E-value=2.1e-13 Score=128.26 Aligned_cols=108 Identities=20% Similarity=0.180 Sum_probs=88.6
Q ss_pred HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830 120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW 196 (364)
Q Consensus 120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~ 196 (364)
.+..+++.+. +.++.+|||+|||+|..+..++.. +|+++|+++.+++.++++... ..++.+..+|+..
T Consensus 40 ~~~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-------~~~i~~~~~D~~~ 110 (263)
T PTZ00098 40 ATTKILSDIE--LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-------KNKIEFEANDILK 110 (263)
T ss_pred HHHHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-------CCceEEEECCccc
Confidence 4566777765 789999999999999999888765 999999999999999988643 2479999999887
Q ss_pred CCCCCCCeeEEEEccChH--------HHHHHHHhccCCCcEEEEEEcC
Q psy7830 197 GHAEGGPYDVIFFGAGTT--------EVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 197 ~~~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
.+..+++||+|++...+. .+++++.++|||||++++....
T Consensus 111 ~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 111 KDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred CCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 665567899999865432 3678999999999999987643
No 35
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.50 E-value=3.4e-14 Score=128.94 Aligned_cols=100 Identities=19% Similarity=0.191 Sum_probs=86.4
Q ss_pred CCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEc
Q psy7830 133 QNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFG 210 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~ 210 (364)
-+|.+|||+|||-|.++..+|+. +|+|+|+++.+++.|+..+..+. -++.+.+..++++....++||+|+|.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~g------v~i~y~~~~~edl~~~~~~FDvV~cm 131 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESG------VNIDYRQATVEDLASAGGQFDVVTCM 131 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcc------ccccchhhhHHHHHhcCCCccEEEEh
Confidence 37999999999999999999999 99999999999999999887732 14667777777666555799999999
Q ss_pred cChHH------HHHHHHhccCCCcEEEEEEcCCC
Q psy7830 211 AGTTE------VSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 211 ~~~~~------l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
-+++| ++..+.+++||||.++++..+..
T Consensus 132 EVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 132 EVLEHVPDPESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred hHHHccCCHHHHHHHHHHHcCCCcEEEEeccccC
Confidence 98887 56789999999999999998865
No 36
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.50 E-value=6.6e-14 Score=141.15 Aligned_cols=174 Identities=19% Similarity=0.164 Sum_probs=118.6
Q ss_pred cCCCccchhhhcccHHHHHHHHHHHHHcCCCCCHH-HHHHHHhCCCCCccCCCccccccCCCceecCCCccChHHHHHHH
Q psy7830 46 MYDEDNENEENFFYTRSYADFLEGLKERKLLNHPR-VEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARC 124 (364)
Q Consensus 46 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~a~~~v~R~~~~p~~~~~~y~d~~l~ig~g~~~s~P~~~a~~ 124 (364)
++..+....|+|..+.+++.+.+.|.+.|....+. |..-...++...+... ..|.++.+.+++.++. ++
T Consensus 173 ~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~G~~~~qd~~s~----lv--- 242 (444)
T PRK14902 173 LNEPPKASIRVNTLKISVEELIEKLEEEGYEVEESLLSPEALVIEKGNIAGT---DLFKDGLITIQDESSM----LV--- 242 (444)
T ss_pred cCCCCCeEEEEcCCCCCHHHHHHHHHHcCceeEEcCCCCCeEEEeCCCcccC---hHHhCceEEEEChHHH----HH---
Confidence 33344445588888777788888887776321111 1100011111111111 3567777777765433 33
Q ss_pred HHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC
Q psy7830 125 LEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA 199 (364)
Q Consensus 125 l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~ 199 (364)
...+. +.++.+|||+|||+|..+..+++. +|+++|+++.+++.+++|+++ .+..+++++.+|+.....
T Consensus 243 ~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~-----~g~~~v~~~~~D~~~~~~ 315 (444)
T PRK14902 243 APALD--PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKR-----LGLTNIETKALDARKVHE 315 (444)
T ss_pred HHHhC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-----cCCCeEEEEeCCcccccc
Confidence 33333 578899999999999999988874 899999999999999999988 334579999999876532
Q ss_pred C-CCCeeEEEEccChH----------------------------HHHHHHHhccCCCcEEEEEEcC
Q psy7830 200 E-GGPYDVIFFGAGTT----------------------------EVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 200 ~-~~~fD~Ii~~~~~~----------------------------~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
. .++||+|+++.++. .++..+.+.|||||+|+.++..
T Consensus 316 ~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 316 KFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred hhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 1 25799999987642 2567888999999999987654
No 37
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.50 E-value=1.8e-13 Score=131.84 Aligned_cols=102 Identities=18% Similarity=0.246 Sum_probs=86.1
Q ss_pred CCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEc
Q psy7830 133 QNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFG 210 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~ 210 (364)
.++.+|||||||+|.++..+++. +|+|+|+++++++.|+++..... . ..+++++++|+.+....+++||+|++.
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~---~-~~~i~~~~~dae~l~~~~~~FD~Vi~~ 205 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDP---V-TSTIEYLCTTAEKLADEGRKFDAVLSL 205 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---c-ccceeEEecCHHHhhhccCCCCEEEEh
Confidence 46789999999999999999887 99999999999999998865421 1 247999999988766556789999998
Q ss_pred cChHH------HHHHHHhccCCCcEEEEEEcCCC
Q psy7830 211 AGTTE------VSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 211 ~~~~~------l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
.+++| +++++.++|||||.+++.+.+..
T Consensus 206 ~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 206 EVIEHVANPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred hHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 88876 57899999999999999987653
No 38
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.49 E-value=1.4e-13 Score=128.85 Aligned_cols=101 Identities=18% Similarity=0.148 Sum_probs=83.5
Q ss_pred HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830 121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW 196 (364)
Q Consensus 121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~ 196 (364)
...+++.+. ..++.+|||+|||+|.++..+++. +|+|+|+|+.|++.|+++ +++++.+|+..
T Consensus 18 ~~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------------~~~~~~~d~~~ 83 (255)
T PRK14103 18 FYDLLARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------------GVDARTGDVRD 83 (255)
T ss_pred HHHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------------CCcEEEcChhh
Confidence 355666665 567899999999999999998875 899999999999998652 57788999876
Q ss_pred CCCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcC
Q psy7830 197 GHAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 197 ~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
.. ..++||+|+++..+++ +++++.+.|||||++++.+..
T Consensus 84 ~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 84 WK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred CC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 64 3578999999998876 467899999999999998654
No 39
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.49 E-value=7e-14 Score=140.27 Aligned_cols=178 Identities=19% Similarity=0.126 Sum_probs=120.2
Q ss_pred eeeccCCCccchhhhcccHHHHHHHHHHHHHcCCCCCHH-H-HHHHHhCCCC-CccCCCccccccCCCceecCCCccChH
Q psy7830 42 LRSEMYDEDNENEENFFYTRSYADFLEGLKERKLLNHPR-V-EEAFYAVRRA-DFINVKPKFGFCDIPYAFANQVVMEPP 118 (364)
Q Consensus 42 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~-~~a~~~v~R~-~~~p~~~~~~y~d~~l~ig~g~~~s~P 118 (364)
++.+++..+....|+|+.+.+++++.+.+.+.|....+. + -..+. ++.. .+... ..|.++.+.+++.+++
T Consensus 156 ~l~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~G~~~~Qd~~s~--- 228 (426)
T TIGR00563 156 ICEANNQRPPMWLRINRTKHSRDEWLALLAEAGMKGFPHDLAPDAVR-LETPAAVHAL---PGFEEGWVTVQDASAQ--- 228 (426)
T ss_pred HHHHhCCCCCeEEEEcCCcCCHHHHHHHHHhcCCceeeCCCCCCeEE-ECCCCCcccC---chhhCCeEEEECHHHH---
Confidence 444555556666799999888888888887777432211 0 00110 1100 01000 3566777777765433
Q ss_pred HHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCC-CEEEEEcC
Q psy7830 119 SYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSK-TLEFILKD 193 (364)
Q Consensus 119 ~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~-~v~~~~~D 193 (364)
.+...+. +.+|.+|||+|||+|+.+..+++. +|+++|+++.+++.+++|+++. +.. ++.+..+|
T Consensus 229 ----~~~~~L~--~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~-----g~~~~v~~~~~d 297 (426)
T TIGR00563 229 ----WVATWLA--PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRL-----GLTIKAETKDGD 297 (426)
T ss_pred ----HHHHHhC--CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHc-----CCCeEEEEeccc
Confidence 3344444 678999999999999999998875 8999999999999999999882 223 34446667
Q ss_pred CCCCCC--CCCCeeEEEEccChH----------------------------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830 194 ARWGHA--EGGPYDVIFFGAGTT----------------------------EVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 194 ~~~~~~--~~~~fD~Ii~~~~~~----------------------------~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
...... ..++||.|+++.+|. .++.++.+.|||||+|++++-+-
T Consensus 298 ~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 298 GRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 654332 346799999876542 25678889999999999988653
No 40
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.48 E-value=1.3e-13 Score=139.03 Aligned_cols=185 Identities=21% Similarity=0.079 Sum_probs=123.0
Q ss_pred CCCCCCcceeeccCCC-------------ccchhhhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCccc
Q psy7830 34 MPIEPPPDLRSEMYDE-------------DNENEENFFYTRSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKF 100 (364)
Q Consensus 34 ~~~~w~~~~~~~l~~~-------------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~a~~~v~R~~~~p~~~~~ 100 (364)
..|.|-..++...|+. +....|+|..+.+++++.+.+...|....+.-...+ .+.. .+... ..
T Consensus 150 s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~-~~~~~--~~ 225 (445)
T PRK14904 150 SHPEWLLERWIARYGEERTEAMLSYNNQAPLFGFRINRLKTTPEKFLAAPADASVTFEKSGLPNF-FLSK-DFSLF--EP 225 (445)
T ss_pred CCCHHHHHHHHHHhChHHHHHHHHHhCCCCCceeEeCCCCCCHHHHHHHHHhCCCceEEcCcceE-EEec-ccccc--Ch
Confidence 4566766666665553 333458888877888888877666532111000000 0110 01100 02
Q ss_pred cccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHH
Q psy7830 101 GFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIK 175 (364)
Q Consensus 101 ~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~ 175 (364)
.|.++.+.+++.++ ......+. +.+|.+|||+|||+|+.+..++.. +|+++|+++.+++.+++|++
T Consensus 226 ~~~~G~~~vqd~~s-------~l~~~~l~--~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~ 296 (445)
T PRK14904 226 FLKLGLVSVQNPTQ-------ALACLLLN--PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHAS 296 (445)
T ss_pred HHhCcEEEEeCHHH-------HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHH
Confidence 44555555544322 23333443 578999999999999999888764 89999999999999999998
Q ss_pred hcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChH----------------------------HHHHHHHhccCCC
Q psy7830 176 ISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTT----------------------------EVSKTILSQLKPN 227 (364)
Q Consensus 176 ~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~----------------------------~l~~~l~~~LkpG 227 (364)
+ .+..+++++++|+..... .++||+|+++.+|. .++..+.+.||||
T Consensus 297 ~-----~g~~~v~~~~~Da~~~~~-~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg 370 (445)
T PRK14904 297 A-----LGITIIETIEGDARSFSP-EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPG 370 (445)
T ss_pred H-----hCCCeEEEEeCccccccc-CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 8 344689999999877643 46899999876541 2567888999999
Q ss_pred cEEEEEEcCC
Q psy7830 228 GRIVAPVGNV 237 (364)
Q Consensus 228 G~Lvi~~~~~ 237 (364)
|+|++++.+-
T Consensus 371 G~lvystcs~ 380 (445)
T PRK14904 371 GVLVYATCSI 380 (445)
T ss_pred cEEEEEeCCC
Confidence 9999988664
No 41
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.47 E-value=4e-13 Score=125.67 Aligned_cols=104 Identities=19% Similarity=0.204 Sum_probs=85.7
Q ss_pred HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC
Q psy7830 120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR 195 (364)
Q Consensus 120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~ 195 (364)
....+++.+. +.++.+|||+|||+|.++..++.. +|+++|+++.+++.++++. +++.++.+|+.
T Consensus 19 ~~~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----------~~~~~~~~d~~ 86 (258)
T PRK01683 19 PARDLLARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----------PDCQFVEADIA 86 (258)
T ss_pred HHHHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC----------CCCeEEECchh
Confidence 3455566554 567899999999999999988875 8999999999999998864 36888999987
Q ss_pred CCCCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcC
Q psy7830 196 WGHAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 196 ~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
.... ..+||+|+++..+++ +++++.+.|||||.+++.+..
T Consensus 87 ~~~~-~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 87 SWQP-PQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred ccCC-CCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 6543 458999999988865 578999999999999997644
No 42
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.47 E-value=5.4e-13 Score=124.88 Aligned_cols=101 Identities=27% Similarity=0.269 Sum_probs=84.2
Q ss_pred CCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC-CCCCCeeEEEE
Q psy7830 133 QNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH-AEGGPYDVIFF 209 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~-~~~~~fD~Ii~ 209 (364)
.++.+|||+|||+|.++..+++. +|+++|+++.|++.|++++.... + .++++++++|+.+.. ...++||+|++
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g---~-~~~v~~~~~d~~~l~~~~~~~fD~V~~ 118 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKG---V-SDNMQFIHCAAQDIAQHLETPVDLILF 118 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC---C-ccceEEEEcCHHHHhhhcCCCCCEEEe
Confidence 45789999999999999999988 99999999999999999987621 1 247999999987653 23468999999
Q ss_pred ccChHH------HHHHHHhccCCCcEEEEEEcCC
Q psy7830 210 GAGTTE------VSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 210 ~~~~~~------l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
+.++++ ++.++.++|||||++++...+.
T Consensus 119 ~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 119 HAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred hhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 988765 4689999999999999876554
No 43
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.46 E-value=1e-12 Score=124.91 Aligned_cols=132 Identities=21% Similarity=0.288 Sum_probs=99.6
Q ss_pred cccCCCceecCCCccChHHHHHHHHHHHhccC--CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHH
Q psy7830 101 GFCDIPYAFANQVVMEPPSYIARCLEQLVDHL--QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNI 174 (364)
Q Consensus 101 ~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l--~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~ 174 (364)
.|....+.++.+..+.+|.+...+...+...+ .++.+|||+|||+|.++..+++. +|+++|+|+.+++.|++|+
T Consensus 86 ~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~ 165 (284)
T TIGR03533 86 WFAGLEFYVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINI 165 (284)
T ss_pred eecCcEEEECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 34455667777888877766555544443222 34679999999999999999875 8999999999999999999
Q ss_pred HhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccCh-------------------------------HHHHHHHHhc
Q psy7830 175 KISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGT-------------------------------TEVSKTILSQ 223 (364)
Q Consensus 175 ~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~-------------------------------~~l~~~l~~~ 223 (364)
..+. + ..+++++.+|+..... ..+||+|++|.++ ..++..+.+.
T Consensus 166 ~~~~---~-~~~i~~~~~D~~~~~~-~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~ 240 (284)
T TIGR03533 166 ERHG---L-EDRVTLIQSDLFAALP-GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADH 240 (284)
T ss_pred HHcC---C-CCcEEEEECchhhccC-CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 8732 2 1479999999865432 3579999998543 1245677889
Q ss_pred cCCCcEEEEEEcCC
Q psy7830 224 LKPNGRIVAPVGNV 237 (364)
Q Consensus 224 LkpGG~Lvi~~~~~ 237 (364)
|+|||++++.++..
T Consensus 241 L~~gG~l~~e~g~~ 254 (284)
T TIGR03533 241 LNENGVLVVEVGNS 254 (284)
T ss_pred cCCCCEEEEEECcC
Confidence 99999999988753
No 44
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.46 E-value=1.6e-13 Score=122.07 Aligned_cols=96 Identities=22% Similarity=0.256 Sum_probs=85.4
Q ss_pred CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830 132 LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI 207 (364)
Q Consensus 132 l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I 207 (364)
+.+-.+|.|+|||+|..|..++++ .|+|+|-|++|++.|++++ ++++|..+|+....+ ..++|++
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl----------p~~~f~~aDl~~w~p-~~~~dll 96 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL----------PDATFEEADLRTWKP-EQPTDLL 96 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC----------CCCceecccHhhcCC-CCccchh
Confidence 456789999999999999999998 9999999999999998765 689999999988765 4689999
Q ss_pred EEccChHH------HHHHHHhccCCCcEEEEEEcCCC
Q psy7830 208 FFGAGTTE------VSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 208 i~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
++|.++++ ++..+...|.|||.|.+.+++..
T Consensus 97 faNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~ 133 (257)
T COG4106 97 FANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNL 133 (257)
T ss_pred hhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCcc
Confidence 99999987 56789999999999999998754
No 45
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.46 E-value=8e-13 Score=123.21 Aligned_cols=109 Identities=16% Similarity=0.150 Sum_probs=85.4
Q ss_pred HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHc---c---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC
Q psy7830 120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEW---L---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD 193 (364)
Q Consensus 120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~---~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D 193 (364)
+...+...+...+.++.+|||+|||+|..+..+++ . +|+++|+|+.|++.|++++.... . ..+++++++|
T Consensus 42 ~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~---~-~~~v~~~~~d 117 (247)
T PRK15451 42 IISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK---A-PTPVDVIEGD 117 (247)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC---C-CCCeEEEeCC
Confidence 33333334443457889999999999999988775 1 99999999999999999987621 1 2479999999
Q ss_pred CCCCCCCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEE
Q psy7830 194 ARWGHAEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 194 ~~~~~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~ 234 (364)
+...+. ..+|+|+++..+++ +++++.+.|||||.+++..
T Consensus 118 ~~~~~~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 118 IRDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hhhCCC--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 887654 35899998876643 6789999999999999875
No 46
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.45 E-value=8.9e-13 Score=118.78 Aligned_cols=117 Identities=24% Similarity=0.266 Sum_probs=91.6
Q ss_pred ccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEE
Q psy7830 114 VMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLE 188 (364)
Q Consensus 114 ~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~ 188 (364)
.++...+.+..+..+. +.++.+|||+|||+|.++..+++. +|+++|+++.+++.+++|+..+. + ..++.
T Consensus 22 ~~t~~~~r~~~l~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g---~-~~~v~ 95 (198)
T PRK00377 22 PMTKEEIRALALSKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG---V-LNNIV 95 (198)
T ss_pred CCCHHHHHHHHHHHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC---C-CCCeE
Confidence 3555556566666665 789999999999999999887653 89999999999999999988721 1 35899
Q ss_pred EEEcCCCCCCCC-CCCeeEEEEccC---hHHHHHHHHhccCCCcEEEEEEcC
Q psy7830 189 FILKDARWGHAE-GGPYDVIFFGAG---TTEVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 189 ~~~~D~~~~~~~-~~~fD~Ii~~~~---~~~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
++.+|..+.... .+.||.|+++.. ...+++.+.+.|||||++++....
T Consensus 96 ~~~~d~~~~l~~~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (198)
T PRK00377 96 LIKGEAPEILFTINEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAIL 147 (198)
T ss_pred EEEechhhhHhhcCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEeec
Confidence 999998754322 357999999654 456788999999999999986543
No 47
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.45 E-value=4.8e-13 Score=126.28 Aligned_cols=107 Identities=29% Similarity=0.271 Sum_probs=81.8
Q ss_pred HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830 120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW 196 (364)
Q Consensus 120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~ 196 (364)
.+..+++.+. +++|++|||||||.|.++..+++. +|+|+.+|++..+.+++++.+.. + .+++++...|..+
T Consensus 50 k~~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~g---l-~~~v~v~~~D~~~ 123 (273)
T PF02353_consen 50 KLDLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAG---L-EDRVEVRLQDYRD 123 (273)
T ss_dssp HHHHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCST---S-SSTEEEEES-GGG
T ss_pred HHHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcC---C-CCceEEEEeeccc
Confidence 4555666665 789999999999999999999988 99999999999999999998822 2 2479999999876
Q ss_pred CCCCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEc
Q psy7830 197 GHAEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVG 235 (364)
Q Consensus 197 ~~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~ 235 (364)
.. .+||.|++...+++ +++.+.++|||||++++...
T Consensus 124 ~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 124 LP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTI 167 (273)
T ss_dssp ------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred cC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEec
Confidence 53 38999999877765 57899999999999998653
No 48
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.45 E-value=7.4e-13 Score=119.10 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=80.6
Q ss_pred HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC
Q psy7830 122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA 199 (364)
Q Consensus 122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~ 199 (364)
..+++.+. ..++.+|||+|||+|.++..+++. +|+++|+|+.+++.+++++..+. . ++.+...|+.....
T Consensus 20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~-----~-~v~~~~~d~~~~~~ 91 (195)
T TIGR00477 20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKAREN-----L-PLRTDAYDINAAAL 91 (195)
T ss_pred HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhC-----C-CceeEeccchhccc
Confidence 45555554 445679999999999999999988 99999999999999999876622 2 47777788754433
Q ss_pred CCCCeeEEEEccChH--------HHHHHHHhccCCCcEEEEE
Q psy7830 200 EGGPYDVIFFGAGTT--------EVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 200 ~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~ 233 (364)
.++||+|+++..++ .+++.+.+.|||||++++.
T Consensus 92 -~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 92 -NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred -cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 35799999876653 3667999999999996654
No 49
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.45 E-value=1.6e-12 Score=116.85 Aligned_cols=119 Identities=23% Similarity=0.249 Sum_probs=92.3
Q ss_pred CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE
Q psy7830 112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL 187 (364)
Q Consensus 112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v 187 (364)
|..++++.+-..+++.+. +.++.+|||+|||+|.++..+++. +|+++|+++.+++.+++|++. .+..++
T Consensus 20 ~~p~t~~~v~~~l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~-----~~~~~v 92 (196)
T PRK07402 20 GIPLTKREVRLLLISQLR--LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDR-----FGVKNV 92 (196)
T ss_pred CCCCCHHHHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-----hCCCCe
Confidence 445666666666777775 678999999999999999988754 899999999999999999987 334589
Q ss_pred EEEEcCCCCCCCC-CCCeeEEEEcc--ChHHHHHHHHhccCCCcEEEEEEcCC
Q psy7830 188 EFILKDARWGHAE-GGPYDVIFFGA--GTTEVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 188 ~~~~~D~~~~~~~-~~~fD~Ii~~~--~~~~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
+++.+|+...... ...+|.|+... ....+++.+.+.|+|||++++.....
T Consensus 93 ~~~~~d~~~~~~~~~~~~d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 93 EVIEGSAPECLAQLAPAPDRVCIEGGRPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred EEEECchHHHHhhCCCCCCEEEEECCcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 9999998642211 13467776643 34578899999999999999987654
No 50
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.44 E-value=9.5e-13 Score=124.21 Aligned_cols=98 Identities=27% Similarity=0.322 Sum_probs=83.1
Q ss_pred CCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeE
Q psy7830 132 LQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDV 206 (364)
Q Consensus 132 l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~ 206 (364)
++++.+|||+|||+|..+..+++. +|+++|+++.+++.|+++... .+..++++..+|+...+..+++||+
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~-----~g~~~v~~~~~d~~~l~~~~~~fD~ 149 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARK-----AGYTNVEFRLGEIEALPVADNSVDV 149 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHH-----cCCCCEEEEEcchhhCCCCCCceeE
Confidence 678999999999999988766654 699999999999999999877 3346899999999876655678999
Q ss_pred EEEccCh------HHHHHHHHhccCCCcEEEEEE
Q psy7830 207 IFFGAGT------TEVSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 207 Ii~~~~~------~~l~~~l~~~LkpGG~Lvi~~ 234 (364)
|+++..+ ..+++++.++|||||+++++.
T Consensus 150 Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 150 IISNCVINLSPDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred EEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 9998754 347889999999999999864
No 51
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.43 E-value=2.1e-12 Score=125.39 Aligned_cols=116 Identities=16% Similarity=0.073 Sum_probs=95.3
Q ss_pred cChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830 115 MEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK 192 (364)
Q Consensus 115 ~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~ 192 (364)
...|.+...++.... +++|++|||+|||+|.+++.++.. +++|+|+++.|++.+++|++. .+..++.+..+
T Consensus 165 ~l~~~la~~~~~l~~--~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~-----~g~~~i~~~~~ 237 (329)
T TIGR01177 165 SMDPKLARAMVNLAR--VTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEH-----YGIEDFFVKRG 237 (329)
T ss_pred CCCHHHHHHHHHHhC--CCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHH-----hCCCCCeEEec
Confidence 346667677766654 688999999999999999887766 999999999999999999987 33456889999
Q ss_pred CCCCCCCCCCCeeEEEEccCh---------------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830 193 DARWGHAEGGPYDVIFFGAGT---------------TEVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 193 D~~~~~~~~~~fD~Ii~~~~~---------------~~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
|+.+.+...++||+|++|.++ ..++..+.+.|||||++++.+.+.
T Consensus 238 D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 238 DATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred chhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 998876555789999998653 346788899999999999988764
No 52
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.41 E-value=1.1e-12 Score=118.58 Aligned_cols=101 Identities=20% Similarity=0.193 Sum_probs=83.0
Q ss_pred CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC-CCCC--CCCCCee
Q psy7830 133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA-RWGH--AEGGPYD 205 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~-~~~~--~~~~~fD 205 (364)
.++.+|||+|||+|..+..+++. +|+++|+++.+++.+++++..+ +.++++++++|+ .... ...++||
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~-----~~~~v~~~~~d~~~~l~~~~~~~~~D 113 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE-----GLTNLRLLCGDAVEVLLDMFPDGSLD 113 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc-----CCCCEEEEecCHHHHHHHHcCccccc
Confidence 46789999999999999998875 8999999999999999998773 236899999998 5433 3356899
Q ss_pred EEEEccCh--------------HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830 206 VIFFGAGT--------------TEVSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 206 ~Ii~~~~~--------------~~l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
+|+++.+. ..+++++.+.|||||++++......
T Consensus 114 ~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~ 160 (202)
T PRK00121 114 RIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG 160 (202)
T ss_pred eEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH
Confidence 99987542 3478999999999999999876543
No 53
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.41 E-value=2.9e-12 Score=123.12 Aligned_cols=132 Identities=21% Similarity=0.298 Sum_probs=98.7
Q ss_pred cccCCCceecCCCccChHHHHHHHHHHHhccCC--CCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHH
Q psy7830 101 GFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQ--NGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNI 174 (364)
Q Consensus 101 ~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~--~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~ 174 (364)
.|....+.++.+..+++|.+...+...+...++ +..+|||+|||+|.++..++.. +|+++|+|+.+++.|++|+
T Consensus 98 ~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~ 177 (307)
T PRK11805 98 WFCGLEFYVDERVLVPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINI 177 (307)
T ss_pred eEcCcEEEECCCCcCCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH
Confidence 344556667777777777765555544432222 2368999999999999998875 8999999999999999999
Q ss_pred HhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccCh-------------------------------HHHHHHHHhc
Q psy7830 175 KISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGT-------------------------------TEVSKTILSQ 223 (364)
Q Consensus 175 ~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~-------------------------------~~l~~~l~~~ 223 (364)
..+. + ..+++++.+|+.+..+ .++||+|++|.++ ..++..+.+.
T Consensus 178 ~~~~---l-~~~i~~~~~D~~~~l~-~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~ 252 (307)
T PRK11805 178 ERHG---L-EDRVTLIESDLFAALP-GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDY 252 (307)
T ss_pred HHhC---C-CCcEEEEECchhhhCC-CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHh
Confidence 8732 2 1469999999865433 3579999998543 1245778889
Q ss_pred cCCCcEEEEEEcCC
Q psy7830 224 LKPNGRIVAPVGNV 237 (364)
Q Consensus 224 LkpGG~Lvi~~~~~ 237 (364)
|+|||++++.++..
T Consensus 253 L~pgG~l~~E~g~~ 266 (307)
T PRK11805 253 LTEDGVLVVEVGNS 266 (307)
T ss_pred cCCCCEEEEEECcC
Confidence 99999999988764
No 54
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.41 E-value=1.9e-12 Score=131.59 Aligned_cols=109 Identities=20% Similarity=0.220 Sum_probs=89.3
Q ss_pred HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830 120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW 196 (364)
Q Consensus 120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~ 196 (364)
.+..+++.+. +.++.+|||+|||+|..+..+++. +|+|+|+|+.+++.|+++... . ..++++..+|+..
T Consensus 254 ~te~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~-----~-~~~v~~~~~d~~~ 325 (475)
T PLN02336 254 TTKEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIG-----R-KCSVEFEVADCTK 325 (475)
T ss_pred HHHHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhc-----C-CCceEEEEcCccc
Confidence 3455666665 577899999999999999888875 899999999999999988754 1 1479999999887
Q ss_pred CCCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcC
Q psy7830 197 GHAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 197 ~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
....+++||+|++...+.+ +++++.+.|||||++++....
T Consensus 326 ~~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 326 KTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred CCCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 6655578999999877654 678999999999999987643
No 55
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.41 E-value=3.6e-12 Score=125.64 Aligned_cols=140 Identities=19% Similarity=0.187 Sum_probs=105.3
Q ss_pred CccCCCcc---ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCH
Q psy7830 92 DFINVKPK---FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLP 164 (364)
Q Consensus 92 ~~~p~~~~---~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~ 164 (364)
.-.|-.|- ..|.+..+.+..+..+.+|.+ ..+++.+...+.++.+|||+|||+|.++..+++. +|+++|+|+
T Consensus 207 ~gePlqYIlG~~~F~G~~f~V~p~vLIPRpeT-E~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~ 285 (423)
T PRK14966 207 NGEPVAYILGVREFYGRRFAVNPNVLIPRPET-EHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISP 285 (423)
T ss_pred cCCCceeEeeeeeecCcEEEeCCCccCCCccH-HHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCH
Confidence 44455442 456677778888888888876 4455555444567789999999999999988754 899999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC-CCCCCeeEEEEccChH-----------------------------
Q psy7830 165 ETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH-AEGGPYDVIFFGAGTT----------------------------- 214 (364)
Q Consensus 165 ~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~-~~~~~fD~Ii~~~~~~----------------------------- 214 (364)
.+++.|++|++.+. .+++++.+|..+.. +..++||+|++|.+.-
T Consensus 286 ~ALe~AreNa~~~g------~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~ 359 (423)
T PRK14966 286 PALETARKNAADLG------ARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSC 359 (423)
T ss_pred HHHHHHHHHHHHcC------CcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHH
Confidence 99999999998732 37999999986532 2235799999987651
Q ss_pred --HHHHHHHhccCCCcEEEEEEcCCC
Q psy7830 215 --EVSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 215 --~l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
.+.+.+.+.|+|||.+++.++...
T Consensus 360 yr~Ii~~a~~~LkpgG~lilEiG~~Q 385 (423)
T PRK14966 360 IRTLAQGAPDRLAEGGFLLLEHGFDQ 385 (423)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECccH
Confidence 134566789999999999887753
No 56
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.41 E-value=2.5e-12 Score=126.22 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=86.4
Q ss_pred HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCC-CCCEEEEEcCCC
Q psy7830 121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQ-SKTLEFILKDAR 195 (364)
Q Consensus 121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~-~~~v~~~~~D~~ 195 (364)
+..+++.+.. ..+.+|||+|||+|.+++.+++. +|+++|+|+.+++.+++|++.+. .. ..++++...|+.
T Consensus 217 trllL~~lp~--~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~---~~~~~~v~~~~~D~l 291 (378)
T PRK15001 217 ARFFMQHLPE--NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNM---PEALDRCEFMINNAL 291 (378)
T ss_pred HHHHHHhCCc--ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---cccCceEEEEEcccc
Confidence 3556666652 33569999999999999999876 99999999999999999998743 11 247899999986
Q ss_pred CCCCCCCCeeEEEEccChH-----------HHHHHHHhccCCCcEEEEEEc
Q psy7830 196 WGHAEGGPYDVIFFGAGTT-----------EVSKTILSQLKPNGRIVAPVG 235 (364)
Q Consensus 196 ~~~~~~~~fD~Ii~~~~~~-----------~l~~~l~~~LkpGG~Lvi~~~ 235 (364)
.... ..+||+|++|.+++ .++..+.+.|+|||.|++...
T Consensus 292 ~~~~-~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 292 SGVE-PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred ccCC-CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 5432 35899999998864 256788899999999998763
No 57
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.40 E-value=4.4e-12 Score=112.33 Aligned_cols=105 Identities=22% Similarity=0.280 Sum_probs=83.9
Q ss_pred HHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC
Q psy7830 123 RCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE 200 (364)
Q Consensus 123 ~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~ 200 (364)
.+.+.+. ..++.+|||+|||+|.++..++.. +|+++|+++.+++.+++|+..+. .+++++.+|.....
T Consensus 10 ~l~~~l~--~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~~~-- 79 (179)
T TIGR00537 10 LLEANLR--ELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNN------VGLDVVMTDLFKGV-- 79 (179)
T ss_pred HHHHHHH--hcCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcC------CceEEEEccccccc--
Confidence 3444444 356689999999999999999988 79999999999999999987732 26889999986643
Q ss_pred CCCeeEEEEccCh---------------------------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830 201 GGPYDVIFFGAGT---------------------------TEVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 201 ~~~fD~Ii~~~~~---------------------------~~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
.++||+|++|.++ ..+++++.++|||||++++.....
T Consensus 80 ~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 80 RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 3589999998664 235678889999999999876543
No 58
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.40 E-value=5.8e-13 Score=109.10 Aligned_cols=97 Identities=27% Similarity=0.303 Sum_probs=79.5
Q ss_pred CCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC--CCCCCeeEEEE
Q psy7830 135 GSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH--AEGGPYDVIFF 209 (364)
Q Consensus 135 g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~--~~~~~fD~Ii~ 209 (364)
|.+|||+|||+|.++..+++. +++++|+++..++.+++++.... + .++++++++|..+.. ...++||+|++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~---~-~~~~~~~~~D~~~~~~~~~~~~~D~Iv~ 76 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNG---L-DDRVEVIVGDARDLPEPLPDGKFDLIVT 76 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCT---T-TTTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHcc---C-CceEEEEECchhhchhhccCceeEEEEE
Confidence 568999999999999988876 99999999999999999998832 1 257999999987654 34578999999
Q ss_pred ccChH--------------HHHHHHHhccCCCcEEEEEEc
Q psy7830 210 GAGTT--------------EVSKTILSQLKPNGRIVAPVG 235 (364)
Q Consensus 210 ~~~~~--------------~l~~~l~~~LkpGG~Lvi~~~ 235 (364)
|.++. .+++.+.++|||||.+++.++
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 98764 257899999999999998764
No 59
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.39 E-value=3.5e-12 Score=123.34 Aligned_cols=104 Identities=23% Similarity=0.167 Sum_probs=81.9
Q ss_pred HHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCC-CCCEEEEEcCCCCCC
Q psy7830 123 RCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQ-SKTLEFILKDARWGH 198 (364)
Q Consensus 123 ~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~-~~~v~~~~~D~~~~~ 198 (364)
.++..+. ...|.+|||||||+|+++..++.. .|+|+|+|+.++..++..... .+ ..++.++.+|+...+
T Consensus 113 ~l~~~l~--~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~-----~~~~~~i~~~~~d~e~lp 185 (322)
T PRK15068 113 RVLPHLS--PLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKL-----LGNDQRAHLLPLGIEQLP 185 (322)
T ss_pred HHHHhhC--CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHh-----cCCCCCeEEEeCCHHHCC
Confidence 3344443 246889999999999999999876 799999999998765543222 11 247999999998776
Q ss_pred CCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEE
Q psy7830 199 AEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 199 ~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~ 234 (364)
. .++||+|++...++| +++++++.|+|||.+++..
T Consensus 186 ~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 186 A-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred C-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 6 678999999877754 6789999999999999874
No 60
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.39 E-value=4.4e-12 Score=120.82 Aligned_cols=103 Identities=18% Similarity=0.182 Sum_probs=81.6
Q ss_pred HHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC
Q psy7830 123 RCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE 200 (364)
Q Consensus 123 ~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~ 200 (364)
.+++.+. ..++.+|||+|||+|..+..+++. +|+|+|+|+.+++.+++++..+. . ++++...|+.....
T Consensus 111 ~~~~~~~--~~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~-----l-~v~~~~~D~~~~~~- 181 (287)
T PRK12335 111 EVLEAVQ--TVKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKEN-----L-NIRTGLYDINSASI- 181 (287)
T ss_pred HHHHHhh--ccCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC-----C-ceEEEEechhcccc-
Confidence 3444443 233459999999999999999987 99999999999999999987732 3 78888888866544
Q ss_pred CCCeeEEEEccChH--------HHHHHHHhccCCCcEEEEEE
Q psy7830 201 GGPYDVIFFGAGTT--------EVSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 201 ~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~~ 234 (364)
.++||+|+++..++ .+++++.+.|+|||++++..
T Consensus 182 ~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 182 QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 56899999987654 35789999999999977643
No 61
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.39 E-value=4.7e-12 Score=116.11 Aligned_cols=109 Identities=22% Similarity=0.227 Sum_probs=87.2
Q ss_pred HHHHHHHHHhccC-CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC
Q psy7830 120 YIARCLEQLVDHL-QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA 194 (364)
Q Consensus 120 ~~a~~l~~L~~~l-~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~ 194 (364)
+...+++.+.... ..+.+|||+|||+|.++..+++. +++++|+++.+++.++++.. +++.++.+|+
T Consensus 19 ~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~---------~~~~~~~~d~ 89 (240)
T TIGR02072 19 MAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS---------ENVQFICGDA 89 (240)
T ss_pred HHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC---------CCCeEEecch
Confidence 4455666655322 34579999999999999999876 78999999999999987652 3788999999
Q ss_pred CCCCCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcCC
Q psy7830 195 RWGHAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 195 ~~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
...+..+++||+|+++..+++ ++.++.+.|+|||.+++.....
T Consensus 90 ~~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 90 EKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred hhCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 877655678999999887754 6789999999999999987543
No 62
>PRK04266 fibrillarin; Provisional
Probab=99.38 E-value=4.8e-12 Score=116.31 Aligned_cols=109 Identities=20% Similarity=0.221 Sum_probs=84.5
Q ss_pred HHHHHHHHHH---HhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEE
Q psy7830 118 PSYIARCLEQ---LVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFI 190 (364)
Q Consensus 118 P~~~a~~l~~---L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~ 190 (364)
+.+.+.++.. +. +++|.+|||+|||+|.++..+++. +|+++|+++.|++.+.+++.. ..|+.++
T Consensus 55 ~~~~~~ll~~~~~l~--i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~-------~~nv~~i 125 (226)
T PRK04266 55 SKLAAAILKGLKNFP--IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE-------RKNIIPI 125 (226)
T ss_pred cchHHHHHhhHhhCC--CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh-------cCCcEEE
Confidence 3355555553 33 679999999999999999999886 799999999999988877654 2489999
Q ss_pred EcCCCCCC---CCCCCeeEEEEccChHH----HHHHHHhccCCCcEEEEEEc
Q psy7830 191 LKDARWGH---AEGGPYDVIFFGAGTTE----VSKTILSQLKPNGRIVAPVG 235 (364)
Q Consensus 191 ~~D~~~~~---~~~~~fD~Ii~~~~~~~----l~~~l~~~LkpGG~Lvi~~~ 235 (364)
.+|+.... .-.++||+|+++....+ ++.++.+.|||||++++.+.
T Consensus 126 ~~D~~~~~~~~~l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 126 LADARKPERYAHVVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred ECCCCCcchhhhccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 99986421 11246999998765432 46899999999999999754
No 63
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.38 E-value=6.4e-12 Score=116.38 Aligned_cols=98 Identities=15% Similarity=0.160 Sum_probs=80.4
Q ss_pred CCCCCEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCee
Q psy7830 132 LQNGSRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYD 205 (364)
Q Consensus 132 l~~g~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD 205 (364)
+.++.+|||+|||+|..+..+++. +|+|+|+++.|++.|++++.... . ..+++++.+|+..... ..+|
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~---~-~~~v~~~~~d~~~~~~--~~~d 124 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH---S-EIPVEILCNDIRHVEI--KNAS 124 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC---C-CCCeEEEECChhhCCC--CCCC
Confidence 467889999999999999888763 79999999999999999987621 1 2479999999987654 3589
Q ss_pred EEEEccChHH--------HHHHHHhccCCCcEEEEEEc
Q psy7830 206 VIFFGAGTTE--------VSKTILSQLKPNGRIVAPVG 235 (364)
Q Consensus 206 ~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~ 235 (364)
+|+++..+++ +++++.+.|||||.++++..
T Consensus 125 ~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 125 MVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred EEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 9988877654 56899999999999998753
No 64
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.38 E-value=7.6e-12 Score=116.13 Aligned_cols=99 Identities=25% Similarity=0.292 Sum_probs=80.8
Q ss_pred CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830 133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF 208 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii 208 (364)
..+.+|||+|||+|.++..++.. +++++|+++.+++.+++++..+ +.++++++.+|+.... ..++||+|+
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-----~~~~~~~~~~d~~~~~-~~~~fD~Vi 159 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL-----GLDNVTFLQSDWFEPL-PGGKFDLIV 159 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCeEEEEECchhccC-cCCceeEEE
Confidence 34569999999999999999875 8999999999999999999872 3457999999987643 346899999
Q ss_pred EccChH--------------------------------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830 209 FGAGTT--------------------------------EVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 209 ~~~~~~--------------------------------~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
+|.++. .+++.+.+.|+|||.+++..+..
T Consensus 160 ~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~ 220 (251)
T TIGR03534 160 SNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYD 220 (251)
T ss_pred ECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECcc
Confidence 976532 24567888999999999987543
No 65
>KOG1270|consensus
Probab=99.38 E-value=1.2e-12 Score=119.74 Aligned_cols=98 Identities=21% Similarity=0.286 Sum_probs=79.2
Q ss_pred CCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCC----CEEEEEcCCCCCCCCCCCeeEEE
Q psy7830 135 GSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSK----TLEFILKDARWGHAEGGPYDVIF 208 (364)
Q Consensus 135 g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~----~v~~~~~D~~~~~~~~~~fD~Ii 208 (364)
|++|||+|||.|.++..|++. .|+|+|++++|++.|++...... .-.. ++++...|++.. .+.||.|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP---~~~~~~~y~l~~~~~~~E~~---~~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDP---VLEGAIAYRLEYEDTDVEGL---TGKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCc---hhccccceeeehhhcchhhc---ccccceee
Confidence 689999999999999999999 99999999999999999843321 1112 356666666544 34699999
Q ss_pred EccChHHH------HHHHHhccCCCcEEEEEEcCCC
Q psy7830 209 FGAGTTEV------SKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 209 ~~~~~~~l------~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
|..+++|+ +..+.+.|||||+|+++..+..
T Consensus 164 csevleHV~dp~~~l~~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 164 CSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRT 199 (282)
T ss_pred eHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhh
Confidence 99998875 5788899999999999997764
No 66
>PRK14967 putative methyltransferase; Provisional
Probab=99.37 E-value=1.1e-11 Score=113.66 Aligned_cols=98 Identities=20% Similarity=0.241 Sum_probs=80.0
Q ss_pred CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830 132 LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF 208 (364)
Q Consensus 132 l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii 208 (364)
+.++.+|||+|||+|.++..+++. +|+++|+++.+++.+++|+..+. .++.++.+|+.... ..++||+|+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~------~~~~~~~~d~~~~~-~~~~fD~Vi 106 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAG------VDVDVRRGDWARAV-EFRPFDVVV 106 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhC------CeeEEEECchhhhc-cCCCeeEEE
Confidence 567899999999999999998876 89999999999999999987732 26888899986643 346899999
Q ss_pred EccCh---------------------------HHHHHHHHhccCCCcEEEEEEcC
Q psy7830 209 FGAGT---------------------------TEVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 209 ~~~~~---------------------------~~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
+|.++ +.+++.+.++||+||++++....
T Consensus 107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 98542 23567788999999999986544
No 67
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.37 E-value=4.8e-12 Score=119.60 Aligned_cols=94 Identities=16% Similarity=0.197 Sum_probs=78.3
Q ss_pred CCCCEEEEECCCccHHHHHHHcc-------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCee
Q psy7830 133 QNGSRVLDIGSGQGYMATAKEWL-------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYD 205 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la~~-------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD 205 (364)
..+.+|||+|||+|+++..+++. .++|+|+|+.+++.|+++. +++.+..+|+...+..+++||
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----------~~~~~~~~d~~~lp~~~~sfD 153 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----------PQVTFCVASSHRLPFADQSLD 153 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----------CCCeEEEeecccCCCcCCcee
Confidence 35578999999999999888754 4899999999999998753 468899999988777678999
Q ss_pred EEEEccChHHHHHHHHhccCCCcEEEEEEcCC
Q psy7830 206 VIFFGAGTTEVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 206 ~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
+|++... ....+++.+.|||||++++.....
T Consensus 154 ~I~~~~~-~~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 154 AIIRIYA-PCKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred EEEEecC-CCCHHHHHhhccCCCEEEEEeCCC
Confidence 9998654 445688999999999999877654
No 68
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.36 E-value=1.1e-12 Score=132.13 Aligned_cols=178 Identities=17% Similarity=0.097 Sum_probs=126.7
Q ss_pred eeeccCCCccchhhhcccHHHHHHHHHHHHHcCCCCCH-HHHHHHHhCCCCCccCC--------CccccccCCCceecCC
Q psy7830 42 LRSEMYDEDNENEENFFYTRSYADFLEGLKERKLLNHP-RVEEAFYAVRRADFINV--------KPKFGFCDIPYAFANQ 112 (364)
Q Consensus 42 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~a~~~v~R~~~~p~--------~~~~~y~d~~l~ig~g 112 (364)
.+.++...+....|+|+++.+.+++.+.+.+.|....+ .| .+...++.. .....|..+.+.+++-
T Consensus 25 ~l~a~~~~~~~~lRvN~lK~~~~~~~~~L~~~g~~~~~~p~------~~~g~~~~~~~~~~~~~~~~~~~~~G~~yvQd~ 98 (470)
T PRK11933 25 FIAACQRPLRRSIRVNTLKISVADFLQLMAPYGWTLTPIPW------CEEGFWIERDDEDALPLGNTAEHLSGLFYIQEA 98 (470)
T ss_pred HHHHcCCCCCeEEEEcCCcCCHHHHHHHHHhCCCceeECCC------CCceEEEecCccccCCcccChHHHCCcEEEECH
Confidence 44555555566679999998888888888776632111 11 111111110 0013566677777766
Q ss_pred CccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE
Q psy7830 113 VVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL 187 (364)
Q Consensus 113 ~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v 187 (364)
+++ +++.++.. . +++|++|||+|||+|..|.+++.. .|+++|+++..++..++|+++ ++..|+
T Consensus 99 sS~----l~~~~L~~-~--~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r-----~G~~nv 166 (470)
T PRK11933 99 SSM----LPVAALFA-D--DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISR-----CGVSNV 166 (470)
T ss_pred HHH----HHHHHhcc-C--CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH-----cCCCeE
Confidence 554 43433311 2 689999999999999999999876 899999999999999999999 556789
Q ss_pred EEEEcCCCCCCC-CCCCeeEEEEccChHH----------------------------HHHHHHhccCCCcEEEEEEcCC
Q psy7830 188 EFILKDARWGHA-EGGPYDVIFFGAGTTE----------------------------VSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 188 ~~~~~D~~~~~~-~~~~fD~Ii~~~~~~~----------------------------l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
.+...|...... ..+.||.|+++.+|.. ++....++|||||+||.++-+-
T Consensus 167 ~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 167 ALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred EEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 999999875421 1357999999988852 5678889999999999998763
No 69
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.36 E-value=1e-11 Score=116.10 Aligned_cols=129 Identities=15% Similarity=0.123 Sum_probs=91.8
Q ss_pred cccCCCceecCCCccChHHHHHHHHHHHhccC---CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHH
Q psy7830 101 GFCDIPYAFANQVVMEPPSYIARCLEQLVDHL---QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKN 173 (364)
Q Consensus 101 ~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l---~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~ 173 (364)
.|.+..+.++.+..+.++.+ ..+++.+...+ ..+.+|||+|||+|.++..+++. +|+++|+|+.+++.|++|
T Consensus 51 ~f~g~~~~v~~~vf~pr~~T-e~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N 129 (251)
T TIGR03704 51 EFCGLRIAVDPGVFVPRRRT-EFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRN 129 (251)
T ss_pred eEcCeEEEECCCCcCCCccH-HHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 44455566666666544443 33343332222 23458999999999999998864 899999999999999999
Q ss_pred HHhcCCCCCCCCCEEEEEcCCCCCCCC--CCCeeEEEEccChH--------------------------------HHHHH
Q psy7830 174 IKISRPDLLQSKTLEFILKDARWGHAE--GGPYDVIFFGAGTT--------------------------------EVSKT 219 (364)
Q Consensus 174 ~~~~~~~~l~~~~v~~~~~D~~~~~~~--~~~fD~Ii~~~~~~--------------------------------~l~~~ 219 (364)
+..+ +++++.+|+.+.... .++||+|++|.++. .++..
T Consensus 130 ~~~~--------~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~ 201 (251)
T TIGR03704 130 LADA--------GGTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAG 201 (251)
T ss_pred HHHc--------CCEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHH
Confidence 8762 247888998654321 25799999997652 24456
Q ss_pred HHhccCCCcEEEEEEcCCC
Q psy7830 220 ILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 220 l~~~LkpGG~Lvi~~~~~~ 238 (364)
+.+.|||||++++..+...
T Consensus 202 a~~~L~~gG~l~l~~~~~~ 220 (251)
T TIGR03704 202 APDWLAPGGHLLVETSERQ 220 (251)
T ss_pred HHHhcCCCCEEEEEECcch
Confidence 6789999999999887643
No 70
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.36 E-value=4.2e-12 Score=114.11 Aligned_cols=101 Identities=17% Similarity=0.102 Sum_probs=83.4
Q ss_pred CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC---CCCCCee
Q psy7830 133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH---AEGGPYD 205 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~---~~~~~fD 205 (364)
....+|||||||+|.++..++.. .|+|+|+++.+++.|++++... +..|++++.+|+.... ..++.+|
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~-----~l~ni~~i~~d~~~~~~~~~~~~~~d 89 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKL-----GLKNLHVLCGDANELLDKFFPDGSLS 89 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHh-----CCCCEEEEccCHHHHHHhhCCCCcee
Confidence 35569999999999999999876 8999999999999999998772 3469999999987542 2345899
Q ss_pred EEEEccChH--------------HHHHHHHhccCCCcEEEEEEcCCC
Q psy7830 206 VIFFGAGTT--------------EVSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 206 ~Ii~~~~~~--------------~l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
.|+++.+.+ .++..+.+.|||||.|++......
T Consensus 90 ~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~ 136 (194)
T TIGR00091 90 KVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEP 136 (194)
T ss_pred EEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence 999986542 478899999999999999886653
No 71
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.35 E-value=7.8e-12 Score=120.10 Aligned_cols=98 Identities=20% Similarity=0.057 Sum_probs=77.3
Q ss_pred CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830 132 LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF 208 (364)
Q Consensus 132 l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii 208 (364)
..+|++|||+|||+|+++..++.. .|+|+|+|+.|+..++...... ....++.+...++.+.+. ...||+|+
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~----~~~~~v~~~~~~ie~lp~-~~~FD~V~ 193 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLL----DNDKRAILEPLGIEQLHE-LYAFDTVF 193 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHh----ccCCCeEEEECCHHHCCC-CCCcCEEE
Confidence 357899999999999999888776 7999999999988754322210 012478888888877654 35899999
Q ss_pred EccChHH------HHHHHHhccCCCcEEEEEE
Q psy7830 209 FGAGTTE------VSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 209 ~~~~~~~------l~~~l~~~LkpGG~Lvi~~ 234 (364)
++.++.| .+.++++.|||||.|++..
T Consensus 194 s~gvL~H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 194 SMGVLYHRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EcchhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 9988765 5789999999999999875
No 72
>PRK08317 hypothetical protein; Provisional
Probab=99.35 E-value=1.4e-11 Score=112.89 Aligned_cols=107 Identities=26% Similarity=0.262 Sum_probs=86.8
Q ss_pred HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830 122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW 196 (364)
Q Consensus 122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~ 196 (364)
..+++.+. +.++.+|||+|||+|.++..++.. +++++|+++.+++.++++.... ..++.+..+|+..
T Consensus 9 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~------~~~~~~~~~d~~~ 80 (241)
T PRK08317 9 ARTFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL------GPNVEFVRGDADG 80 (241)
T ss_pred HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC------CCceEEEeccccc
Confidence 44555554 678899999999999999888764 8999999999999999884331 2579999999877
Q ss_pred CCCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcC
Q psy7830 197 GHAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 197 ~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
.....++||+|+++..+++ +++++.+.|||||.+++....
T Consensus 81 ~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 81 LPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred CCCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 6555678999999877654 678999999999999987644
No 73
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.35 E-value=1e-11 Score=120.92 Aligned_cols=106 Identities=16% Similarity=0.203 Sum_probs=84.4
Q ss_pred HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830 121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW 196 (364)
Q Consensus 121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~ 196 (364)
+..+++.+.. ....+|||+|||+|.++..+++. +|+++|+++.+++.++++++.+. + ..+++..|+..
T Consensus 185 t~lLl~~l~~--~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~---l---~~~~~~~D~~~ 256 (342)
T PRK09489 185 SQLLLSTLTP--HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG---L---EGEVFASNVFS 256 (342)
T ss_pred HHHHHHhccc--cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---C---CCEEEEccccc
Confidence 4566776652 34558999999999999999876 89999999999999999998843 2 35677788765
Q ss_pred CCCCCCCeeEEEEccChH-----------HHHHHHHhccCCCcEEEEEEcC
Q psy7830 197 GHAEGGPYDVIFFGAGTT-----------EVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 197 ~~~~~~~fD~Ii~~~~~~-----------~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
.. .++||+|++|.+++ .++..+.+.|||||.|++....
T Consensus 257 ~~--~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 257 DI--KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred cc--CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 32 46899999998875 3567889999999999987644
No 74
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=2.7e-12 Score=125.56 Aligned_cols=188 Identities=22% Similarity=0.214 Sum_probs=134.5
Q ss_pred CCCCCCcceeeccCCCc-------------cchhhhcccHHHHHHHHHHHHHcCCCCCHH-HHHHHHhCCCCCccCCCcc
Q psy7830 34 MPIEPPPDLRSEMYDED-------------NENEENFFYTRSYADFLEGLKERKLLNHPR-VEEAFYAVRRADFINVKPK 99 (364)
Q Consensus 34 ~~~~w~~~~~~~l~~~~-------------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~a~~~v~R~~~~p~~~~ 99 (364)
..|.|-...+...|+.. ....|+|+++.+.+.+.+.|...+....+. +......+.+..-+...
T Consensus 53 ~~p~w~~~~~~~~~~~~~~~~~~~a~~~~~~~~~Rvn~lk~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~-- 130 (355)
T COG0144 53 SHPEWLVEKLPDALGEDEAEAIAAALLRPPPRSLRVNTLKADVEELLEALEEAGVLDEKPWVLDEVLRIEASGPIGRL-- 130 (355)
T ss_pred cCcHHHHHHHHHHcChHHHHHHHHHcCCCCCeeEEEcCccCCHHHHHHHHhhcccccccCCccccEEEecCCCCcccC--
Confidence 44556666666555554 334488888888999888887766433332 11111111111111111
Q ss_pred ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHH
Q psy7830 100 FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKN 173 (364)
Q Consensus 100 ~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~ 173 (364)
..|.++.+.+|+-+++ +.+.+++ .++|.+|||+++++|..|.+++.+ .|+++|+++..++..++|
T Consensus 131 ~~~~~G~~~vQd~sS~----l~a~~L~-----p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~n 201 (355)
T COG0144 131 PEFAEGLIYVQDEASQ----LPALVLD-----PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLREN 201 (355)
T ss_pred hhhhceEEEEcCHHHH----HHHHHcC-----CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHH
Confidence 3688888888887666 5554443 789999999999999999999988 379999999999999999
Q ss_pred HHhcCCCCCCCCCEEEEEcCCCCCC---CCCCCeeEEEEccChHH----------------------------HHHHHHh
Q psy7830 174 IKISRPDLLQSKTLEFILKDARWGH---AEGGPYDVIFFGAGTTE----------------------------VSKTILS 222 (364)
Q Consensus 174 ~~~~~~~~l~~~~v~~~~~D~~~~~---~~~~~fD~Ii~~~~~~~----------------------------l~~~l~~ 222 (364)
+++ +|..|+.+...|..... ...++||.|+++.+|.. ++....+
T Consensus 202 l~R-----lG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~ 276 (355)
T COG0144 202 LKR-----LGVRNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALK 276 (355)
T ss_pred HHH-----cCCCceEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 999 66788888888876443 22235999999998842 5678889
Q ss_pred ccCCCcEEEEEEcCC
Q psy7830 223 QLKPNGRIVAPVGNV 237 (364)
Q Consensus 223 ~LkpGG~Lvi~~~~~ 237 (364)
.|||||+||.++-+-
T Consensus 277 ~lk~GG~LVYSTCS~ 291 (355)
T COG0144 277 LLKPGGVLVYSTCSL 291 (355)
T ss_pred hcCCCCEEEEEccCC
Confidence 999999999998663
No 75
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.35 E-value=9.3e-12 Score=123.07 Aligned_cols=103 Identities=25% Similarity=0.212 Sum_probs=83.7
Q ss_pred HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830 121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG 197 (364)
Q Consensus 121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~ 197 (364)
...+++.+. ++++++|||||||+|.++..+++. +|+|+|+|+.+++.|++++.. .++++...|....
T Consensus 156 ~~~l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~--------l~v~~~~~D~~~l 225 (383)
T PRK11705 156 LDLICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG--------LPVEIRLQDYRDL 225 (383)
T ss_pred HHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc--------CeEEEEECchhhc
Confidence 344555554 678999999999999999998875 899999999999999998743 2588888887654
Q ss_pred CCCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEcC
Q psy7830 198 HAEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 198 ~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
.++||.|++...+++ +++.+.++|||||++++....
T Consensus 226 ---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 226 ---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred ---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 368999998876654 568899999999999997644
No 76
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.34 E-value=1.4e-11 Score=117.12 Aligned_cols=133 Identities=23% Similarity=0.314 Sum_probs=95.3
Q ss_pred cccCCCceecCCCccChHHHHHHHHHHHhcc--CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHH
Q psy7830 101 GFCDIPYAFANQVVMEPPSYIARCLEQLVDH--LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNI 174 (364)
Q Consensus 101 ~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~--l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~ 174 (364)
.|.+..+.+..+..+.+|.+-..+-..+... ..++.+|||+|||+|.++..++.. +|+++|+|+.+++.|++|+
T Consensus 79 ~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~ 158 (284)
T TIGR00536 79 EFYGLEFFVNEHVLIPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENA 158 (284)
T ss_pred eEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 3445556666677676665433322222211 122369999999999999999875 8999999999999999999
Q ss_pred HhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccCh-------------------------------HHHHHHHHhc
Q psy7830 175 KISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGT-------------------------------TEVSKTILSQ 223 (364)
Q Consensus 175 ~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~-------------------------------~~l~~~l~~~ 223 (364)
..+. + ..+++++.+|..+... ..+||+|++|.+. ..++..+.+.
T Consensus 159 ~~~~---~-~~~v~~~~~d~~~~~~-~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~ 233 (284)
T TIGR00536 159 EKNQ---L-EHRVEFIQSNLFEPLA-GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDY 233 (284)
T ss_pred HHcC---C-CCcEEEEECchhccCc-CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 8732 1 1359999999876432 2479999998433 1245677889
Q ss_pred cCCCcEEEEEEcCCC
Q psy7830 224 LKPNGRIVAPVGNVW 238 (364)
Q Consensus 224 LkpGG~Lvi~~~~~~ 238 (364)
|+|||.+++.++...
T Consensus 234 L~~gG~l~~e~g~~q 248 (284)
T TIGR00536 234 LKPNGFLVCEIGNWQ 248 (284)
T ss_pred ccCCCEEEEEECccH
Confidence 999999999998753
No 77
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.33 E-value=2.3e-12 Score=103.23 Aligned_cols=85 Identities=24% Similarity=0.348 Sum_probs=68.2
Q ss_pred EEEECCCccHHHHHHHcc-------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEc
Q psy7830 138 VLDIGSGQGYMATAKEWL-------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFG 210 (364)
Q Consensus 138 VLDiGcGsG~~a~~la~~-------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~ 210 (364)
|||+|||+|..+..+.+. +++++|+|+.|++.++++.... + .+++++++|+.++....++||+|++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~-----~-~~~~~~~~D~~~l~~~~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED-----G-PKVRFVQADARDLPFSDGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT-----T-TTSEEEESCTTCHHHHSSSEEEEEE-
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc-----C-CceEEEECCHhHCcccCCCeeEEEEc
Confidence 799999999999888743 8999999999999999998762 1 28999999998876656799999994
Q ss_pred cC-hH--------HHHHHHHhccCCCc
Q psy7830 211 AG-TT--------EVSKTILSQLKPNG 228 (364)
Q Consensus 211 ~~-~~--------~l~~~l~~~LkpGG 228 (364)
.. ++ .+++++.++|||||
T Consensus 75 ~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 75 GLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 43 43 36789999999998
No 78
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=1e-11 Score=116.69 Aligned_cols=105 Identities=20% Similarity=0.227 Sum_probs=86.7
Q ss_pred HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830 122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG 197 (364)
Q Consensus 122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~ 197 (364)
..+++.|. ...+.+|||+|||.|.+++.+++. +++.+|+|..+++.+++|+..|. ..+..+...|..+.
T Consensus 148 ~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~-----~~~~~v~~s~~~~~ 220 (300)
T COG2813 148 RLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANG-----VENTEVWASNLYEP 220 (300)
T ss_pred HHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcC-----CCccEEEEeccccc
Confidence 56667666 344559999999999999999988 99999999999999999999854 24546777777655
Q ss_pred CCCCCCeeEEEEccChH-----------HHHHHHHhccCCCcEEEEEEc
Q psy7830 198 HAEGGPYDVIFFGAGTT-----------EVSKTILSQLKPNGRIVAPVG 235 (364)
Q Consensus 198 ~~~~~~fD~Ii~~~~~~-----------~l~~~l~~~LkpGG~Lvi~~~ 235 (364)
.. ++||.|++|.+++ .++....+.|++||.|.+...
T Consensus 221 v~--~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 221 VE--GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cc--ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 43 3899999999985 367888999999999998776
No 79
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.33 E-value=1.6e-11 Score=109.59 Aligned_cols=104 Identities=17% Similarity=0.147 Sum_probs=79.9
Q ss_pred HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC
Q psy7830 122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA 199 (364)
Q Consensus 122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~ 199 (364)
..+++.+. ..++.++||+|||.|..+..||+. .|+++|+|+..++.+++.++... . +|++.+.|+.....
T Consensus 20 s~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~-----l-~i~~~~~Dl~~~~~ 91 (192)
T PF03848_consen 20 SEVLEAVP--LLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEG-----L-DIRTRVADLNDFDF 91 (192)
T ss_dssp HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-------TEEEEE-BGCCBS-
T ss_pred HHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcC-----c-eeEEEEecchhccc
Confidence 44555544 335679999999999999999999 99999999999999988776622 2 59999999877655
Q ss_pred CCCCeeEEEEccChH--------HHHHHHHhccCCCcEEEEEE
Q psy7830 200 EGGPYDVIFFGAGTT--------EVSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 200 ~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~~ 234 (364)
+ +.||+|++..++. .+.+.+.+.++|||++++..
T Consensus 92 ~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 92 P-EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred c-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 3 6899999865553 36788899999999988744
No 80
>PRK14968 putative methyltransferase; Provisional
Probab=99.33 E-value=3e-11 Score=107.00 Aligned_cols=109 Identities=26% Similarity=0.333 Sum_probs=85.0
Q ss_pred HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC
Q psy7830 122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA 199 (364)
Q Consensus 122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~ 199 (364)
..+++.+. ..++.+|||+|||+|+++..++.. +|+++|+++.+++.+++++..+. +...++.++.+|..+...
T Consensus 13 ~~l~~~~~--~~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~---~~~~~~~~~~~d~~~~~~ 87 (188)
T PRK14968 13 FLLAENAV--DKKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNN---IRNNGVEVIRSDLFEPFR 87 (188)
T ss_pred HHHHHhhh--ccCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcC---CCCcceEEEecccccccc
Confidence 44555555 467889999999999999999888 99999999999999999987632 211128899999876443
Q ss_pred CCCCeeEEEEccCh---------------------------HHHHHHHHhccCCCcEEEEEEcC
Q psy7830 200 EGGPYDVIFFGAGT---------------------------TEVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 200 ~~~~fD~Ii~~~~~---------------------------~~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
...||+|++|.++ ..+++.+.+.|||||.+++....
T Consensus 88 -~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 88 -GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred -ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 3479999987653 22568888999999999887654
No 81
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=1.9e-11 Score=115.83 Aligned_cols=130 Identities=19% Similarity=0.235 Sum_probs=96.4
Q ss_pred cccCCCceecCCCccChHHHHHHHHHHHhccCCCCC-EEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHH
Q psy7830 101 GFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGS-RVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIK 175 (364)
Q Consensus 101 ~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~-~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~ 175 (364)
.|..-.+.+..+..+++|.+...+-..+. ...... +|||+|||||.+++.+++. +|+|+|+|+.+++.|++|+.
T Consensus 77 ~f~gl~~~v~~~vliPr~dTe~Lve~~l~-~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~ 155 (280)
T COG2890 77 EFGGLRFKVDEGVLIPRPDTELLVEAALA-LLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAE 155 (280)
T ss_pred eecceeeeeCCCceecCCchHHHHHHHHH-hhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHH
Confidence 34445556667778888877443333221 122233 7999999999999999987 89999999999999999999
Q ss_pred hcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccCh---H----------------------------HHHHHHHhcc
Q psy7830 176 ISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGT---T----------------------------EVSKTILSQL 224 (364)
Q Consensus 176 ~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~---~----------------------------~l~~~l~~~L 224 (364)
.+. ..++.++.+|...... ++||+|++|.++ . .++..+.+.|
T Consensus 156 ~~~-----l~~~~~~~~dlf~~~~--~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l 228 (280)
T COG2890 156 RNG-----LVRVLVVQSDLFEPLR--GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDIL 228 (280)
T ss_pred HcC-----CccEEEEeeecccccC--CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHc
Confidence 843 3567777777655433 489999999775 1 1456788899
Q ss_pred CCCcEEEEEEcCCC
Q psy7830 225 KPNGRIVAPVGNVW 238 (364)
Q Consensus 225 kpGG~Lvi~~~~~~ 238 (364)
+|||.+++..+...
T Consensus 229 ~~~g~l~le~g~~q 242 (280)
T COG2890 229 KPGGVLILEIGLTQ 242 (280)
T ss_pred CCCcEEEEEECCCc
Confidence 99999999998654
No 82
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.32 E-value=1.3e-11 Score=119.53 Aligned_cols=94 Identities=17% Similarity=0.082 Sum_probs=79.7
Q ss_pred CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830 133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF 208 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii 208 (364)
.++.+|||+|||+|.++..+++. +|+++|+++.|++.++++... .+++++.+|+.+....+++||+|+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~--------~~i~~i~gD~e~lp~~~~sFDvVI 183 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--------KECKIIEGDAEDLPFPTDYADRYV 183 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc--------cCCeEEeccHHhCCCCCCceeEEE
Confidence 46889999999999999888764 899999999999999987542 478899999987766567899999
Q ss_pred EccChHH------HHHHHHhccCCCcEEEEEE
Q psy7830 209 FGAGTTE------VSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 209 ~~~~~~~------l~~~l~~~LkpGG~Lvi~~ 234 (364)
++..+++ +++++.+.|||||++++..
T Consensus 184 s~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 184 SAGSIEYWPDPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred EcChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 9877653 6789999999999998754
No 83
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.32 E-value=8.3e-12 Score=107.39 Aligned_cols=101 Identities=29% Similarity=0.336 Sum_probs=76.7
Q ss_pred HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC
Q psy7830 122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA 199 (364)
Q Consensus 122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~ 199 (364)
...+..+.+...++.+|||+|||+|.++..+++. +|+++|+++.+++. . ++.....+......
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~------~---------~~~~~~~~~~~~~~ 74 (161)
T PF13489_consen 10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK------R---------NVVFDNFDAQDPPF 74 (161)
T ss_dssp HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH------T---------TSEEEEEECHTHHC
T ss_pred HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh------h---------hhhhhhhhhhhhhc
Confidence 3344444433578899999999999999999877 99999999999988 2 12222222222233
Q ss_pred CCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcCC
Q psy7830 200 EGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 200 ~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
..++||+|+++..+++ +++.+.++|||||++++.+...
T Consensus 75 ~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 75 PDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred cccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 4578999999999876 5789999999999999998764
No 84
>KOG1540|consensus
Probab=99.32 E-value=1.7e-11 Score=111.64 Aligned_cols=108 Identities=21% Similarity=0.215 Sum_probs=86.7
Q ss_pred HHHHhccCCCCCEEEEECCCccHHHHHHHcc----------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC
Q psy7830 125 LEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA 194 (364)
Q Consensus 125 l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~ 194 (364)
..+|. ..+++++||++||||-++..+.+. +|+.+|++|+|+..++++..+.. ......+.++++|+
T Consensus 93 v~~L~--p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~--l~~~~~~~w~~~dA 168 (296)
T KOG1540|consen 93 VSKLG--PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRP--LKASSRVEWVEGDA 168 (296)
T ss_pred hhccC--CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcC--CCcCCceEEEeCCc
Confidence 44444 567899999999999999888765 79999999999999999987622 01223599999999
Q ss_pred CCCCCCCCCeeEEEEccCh------HHHHHHHHhccCCCcEEEEEEcC
Q psy7830 195 RWGHAEGGPYDVIFFGAGT------TEVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 195 ~~~~~~~~~fD~Ii~~~~~------~~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
+++++++.+||...+...+ +..+++++++|||||++.+-..+
T Consensus 169 E~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFs 216 (296)
T KOG1540|consen 169 EDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFS 216 (296)
T ss_pred ccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEcc
Confidence 9999988999998765544 34678999999999998864433
No 85
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.32 E-value=1e-11 Score=114.85 Aligned_cols=107 Identities=22% Similarity=0.248 Sum_probs=85.1
Q ss_pred HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC
Q psy7830 121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR 195 (364)
Q Consensus 121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~ 195 (364)
...++..+.. ..++.+|||+|||+|+.++.++.. +|+++|+++++++.|++|++.+. +. ++++++.+|+.
T Consensus 56 ~g~~L~~l~~-~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g---l~-~~i~~~~gda~ 130 (234)
T PLN02781 56 EGLFLSMLVK-IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG---VD-HKINFIQSDAL 130 (234)
T ss_pred HHHHHHHHHH-HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CC-CcEEEEEccHH
Confidence 3555555553 556889999999999998887764 99999999999999999998833 32 57999999987
Q ss_pred CCCC------CCCCeeEEEEccC---hHHHHHHHHhccCCCcEEEE
Q psy7830 196 WGHA------EGGPYDVIFFGAG---TTEVSKTILSQLKPNGRIVA 232 (364)
Q Consensus 196 ~~~~------~~~~fD~Ii~~~~---~~~l~~~l~~~LkpGG~Lvi 232 (364)
+... ..++||+|+++.. +..+.+.+.+.|+|||++++
T Consensus 131 ~~L~~l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 131 SALDQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred HHHHHHHhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 6422 1358999999964 34577889999999999886
No 86
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=1.6e-11 Score=112.43 Aligned_cols=119 Identities=21% Similarity=0.250 Sum_probs=100.3
Q ss_pred CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCC-
Q psy7830 112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSK- 185 (364)
Q Consensus 112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~- 185 (364)
+..+-.|.-.+.++..+. +.+|++|||.|.|||.++..++.. +|+++|+.++.++.|++|++. .+..
T Consensus 74 ~tQiIyPKD~~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~-----~~l~d 146 (256)
T COG2519 74 RTQIIYPKDAGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSE-----FGLGD 146 (256)
T ss_pred CCceecCCCHHHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHH-----hcccc
Confidence 334444555677888887 899999999999999999999964 999999999999999999998 2223
Q ss_pred CEEEEEcCCCCCCCCCCCeeEEEEccChHH-HHHHHHhccCCCcEEEEEEcCCC
Q psy7830 186 TLEFILKDARWGHAEGGPYDVIFFGAGTTE-VSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 186 ~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~-l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
++.+..+|+.+...++ .||.|+.+.+-+| .++.+.+.|||||.+++-+++-.
T Consensus 147 ~v~~~~~Dv~~~~~~~-~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 147 RVTLKLGDVREGIDEE-DVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred ceEEEecccccccccc-ccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 4999999998876644 8999999998876 78999999999999998877653
No 87
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.31 E-value=1.4e-11 Score=109.14 Aligned_cols=94 Identities=17% Similarity=0.220 Sum_probs=73.1
Q ss_pred CCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEcc
Q psy7830 134 NGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGA 211 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~ 211 (364)
.-.++||+|||.|.++..|+.+ +++++|+++.+++.|++++.. .++|++.+.|+...++ .++||+|++..
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~-------~~~V~~~~~dvp~~~P-~~~FDLIV~SE 114 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG-------LPHVEWIQADVPEFWP-EGRFDLIVLSE 114 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT--------SSEEEEES-TTT----SS-EEEEEEES
T ss_pred ccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC-------CCCeEEEECcCCCCCC-CCCeeEEEEeh
Confidence 3468999999999999999999 999999999999999999865 4699999999987765 47999999876
Q ss_pred ChH---------HHHHHHHhccCCCcEEEEEEc
Q psy7830 212 GTT---------EVSKTILSQLKPNGRIVAPVG 235 (364)
Q Consensus 212 ~~~---------~l~~~l~~~LkpGG~Lvi~~~ 235 (364)
.+. .+...+.+.|+|||.||+-..
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 653 256788899999999998653
No 88
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.31 E-value=1.4e-11 Score=125.98 Aligned_cols=133 Identities=14% Similarity=0.177 Sum_probs=99.7
Q ss_pred ccccCCCceecCCCccChHHHHHHHHHHHhccC--------------------------CCCCEEEEECCCccHHHHHHH
Q psy7830 100 FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHL--------------------------QNGSRVLDIGSGQGYMATAKE 153 (364)
Q Consensus 100 ~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l--------------------------~~g~~VLDiGcGsG~~a~~la 153 (364)
..|....+.++.+..+++|.+- .+++++...+ .++.+|||+|||+|.+++.++
T Consensus 79 ~~F~g~~f~V~~~VLIPRpeTE-~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la 157 (506)
T PRK01544 79 KEFYSREFIVNKHVLIPRSDTE-VLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLL 157 (506)
T ss_pred CEEcCcEEEeCCCcccCCCcHH-HHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHH
Confidence 4677788889999999999873 3333332111 134689999999999999887
Q ss_pred cc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChH---------------
Q psy7830 154 WL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTT--------------- 214 (364)
Q Consensus 154 ~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~--------------- 214 (364)
.. +|+++|+|+.+++.|++|+..+. + .+++.++.+|+..... .++||+|++|.++-
T Consensus 158 ~~~p~~~v~avDis~~al~~A~~N~~~~~---l-~~~v~~~~~D~~~~~~-~~~fDlIvsNPPYi~~~~~~~l~~~v~~~ 232 (506)
T PRK01544 158 CELPNANVIATDISLDAIEVAKSNAIKYE---V-TDRIQIIHSNWFENIE-KQKFDFIVSNPPYISHSEKSEMAIETINY 232 (506)
T ss_pred HHCCCCeEEEEECCHHHHHHHHHHHHHcC---C-ccceeeeecchhhhCc-CCCccEEEECCCCCCchhhhhcCchhhcc
Confidence 54 89999999999999999987732 2 1479999999765332 35799999986531
Q ss_pred -----------------HHHHHHHhccCCCcEEEEEEcCCC
Q psy7830 215 -----------------EVSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 215 -----------------~l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
.+++.+.+.|+|||.+++.++...
T Consensus 233 EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q 273 (506)
T PRK01544 233 EPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQ 273 (506)
T ss_pred CcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCch
Confidence 134567789999999999886543
No 89
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.30 E-value=4e-11 Score=113.03 Aligned_cols=129 Identities=24% Similarity=0.322 Sum_probs=93.0
Q ss_pred ccCCCceecCCCccChHHHHHHHHHHHhc--cCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHH
Q psy7830 102 FCDIPYAFANQVVMEPPSYIARCLEQLVD--HLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIK 175 (364)
Q Consensus 102 y~d~~l~ig~g~~~s~P~~~a~~l~~L~~--~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~ 175 (364)
|.+..+.++.+..+++|.+ ..+++.+.. ...++.+|||+|||+|.++..++.. +|+++|+++.+++.+++|+.
T Consensus 75 f~~~~~~~~~~~lipr~~t-e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 75 FWGLDFKVSPGVLIPRPET-EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred EcCcEEEECCCceeCCCCc-HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence 4444555555655555544 333333321 1356789999999999999998876 89999999999999999987
Q ss_pred hcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChH--------------------------------HHHHHHHhc
Q psy7830 176 ISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTT--------------------------------EVSKTILSQ 223 (364)
Q Consensus 176 ~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~--------------------------------~l~~~l~~~ 223 (364)
. ....++.++.+|...... .++||+|++|.++. .+++.+.+.
T Consensus 154 ~-----~~~~~i~~~~~d~~~~~~-~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~ 227 (275)
T PRK09328 154 H-----GLGARVEFLQGDWFEPLP-GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRY 227 (275)
T ss_pred h-----CCCCcEEEEEccccCcCC-CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHh
Confidence 3 113589999999865433 46899999986541 134566699
Q ss_pred cCCCcEEEEEEcCC
Q psy7830 224 LKPNGRIVAPVGNV 237 (364)
Q Consensus 224 LkpGG~Lvi~~~~~ 237 (364)
|+|||++++..+..
T Consensus 228 Lk~gG~l~~e~g~~ 241 (275)
T PRK09328 228 LKPGGWLLLEIGYD 241 (275)
T ss_pred cccCCEEEEEECch
Confidence 99999999977653
No 90
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.29 E-value=2.4e-11 Score=111.96 Aligned_cols=111 Identities=18% Similarity=0.236 Sum_probs=89.0
Q ss_pred HHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC
Q psy7830 123 RCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH 198 (364)
Q Consensus 123 ~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~ 198 (364)
.+|..... +....+|||+|||+|.+++.++.+ ++++||+++.+.+.|++|++.|. + .++++++++|+....
T Consensus 34 iLL~~~~~-~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~---l-~~ri~v~~~Di~~~~ 108 (248)
T COG4123 34 ILLAAFAP-VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNP---L-EERIQVIEADIKEFL 108 (248)
T ss_pred HHHHhhcc-cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCc---c-hhceeEehhhHHHhh
Confidence 34444432 455889999999999999999988 89999999999999999998743 2 368999999998765
Q ss_pred CC--CCCeeEEEEccChH------------------------HHHHHHHhccCCCcEEEEEEcCCC
Q psy7830 199 AE--GGPYDVIFFGAGTT------------------------EVSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 199 ~~--~~~fD~Ii~~~~~~------------------------~l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
.. ..+||+|+||.++. .+.+...++||+||.+.+......
T Consensus 109 ~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~er 174 (248)
T COG4123 109 KALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPER 174 (248)
T ss_pred hcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHH
Confidence 33 24699999997762 145678899999999999887654
No 91
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.29 E-value=8.4e-13 Score=105.18 Aligned_cols=87 Identities=21% Similarity=0.196 Sum_probs=56.3
Q ss_pred EEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC--CCCeeEEEEccC
Q psy7830 139 LDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE--GGPYDVIFFGAG 212 (364)
Q Consensus 139 LDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~--~~~fD~Ii~~~~ 212 (364)
||+|||+|.++..++.. +++++|+|+.|++.+++++... ...+......+..+.... .++||+|++..+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~v 75 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAEL-----GNDNFERLRFDVLDLFDYDPPESFDLVVASNV 75 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHC-----T---EEEEE--SSS---CCC----SEEEEE-T
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc-----CCcceeEEEeecCChhhcccccccceehhhhh
Confidence 79999999999887765 9999999999999998888772 223444444443332211 258999999988
Q ss_pred hHH------HHHHHHhccCCCcEE
Q psy7830 213 TTE------VSKTILSQLKPNGRI 230 (364)
Q Consensus 213 ~~~------l~~~l~~~LkpGG~L 230 (364)
+++ +++++.++|||||+|
T Consensus 76 l~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 76 LHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp TS--S-HHHHHHHHTTT-TSS-EE
T ss_pred HhhhhhHHHHHHHHHHHcCCCCCC
Confidence 876 467999999999986
No 92
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.28 E-value=2.5e-11 Score=111.08 Aligned_cols=95 Identities=21% Similarity=0.199 Sum_probs=78.2
Q ss_pred CEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEcc
Q psy7830 136 SRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGA 211 (364)
Q Consensus 136 ~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~ 211 (364)
.+|||+|||+|..+..+++. +|+++|+|+.+++.+++++.... + .++++++..|....+. .++||+|++..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g---l-~~~i~~~~~d~~~~~~-~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG---L-QGRIRIFYRDSAKDPF-PDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC---C-CcceEEEecccccCCC-CCCCCEeehHH
Confidence 37999999999999888865 89999999999999999987621 1 2478999999865543 35899999877
Q ss_pred ChHH------HHHHHHhccCCCcEEEEEEc
Q psy7830 212 GTTE------VSKTILSQLKPNGRIVAPVG 235 (364)
Q Consensus 212 ~~~~------l~~~l~~~LkpGG~Lvi~~~ 235 (364)
.+++ +++++.+.|||||++++...
T Consensus 76 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 76 VIHHIKDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHHhCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 6654 67899999999999998764
No 93
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.27 E-value=4.6e-11 Score=104.87 Aligned_cols=105 Identities=13% Similarity=0.051 Sum_probs=82.3
Q ss_pred HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC
Q psy7830 122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA 199 (364)
Q Consensus 122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~ 199 (364)
..+++.+. +.++.+|||+|||+|.++..+++. +|+++|+++.+++.+++++.. .++++++.+|+.....
T Consensus 3 ~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~-------~~~v~ii~~D~~~~~~ 73 (169)
T smart00650 3 DKIVRAAN--LRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA-------ADNLTVIHGDALKFDL 73 (169)
T ss_pred HHHHHhcC--CCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc-------CCCEEEEECchhcCCc
Confidence 45566665 577889999999999999999988 999999999999999998754 2489999999988765
Q ss_pred CCCCeeEEEEccChHH---HHHHHHhc--cCCCcEEEEEEc
Q psy7830 200 EGGPYDVIFFGAGTTE---VSKTILSQ--LKPNGRIVAPVG 235 (364)
Q Consensus 200 ~~~~fD~Ii~~~~~~~---l~~~l~~~--LkpGG~Lvi~~~ 235 (364)
.+..||.|++|.+++. ++..+.+. +.++|.+++...
T Consensus 74 ~~~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 74 PKLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred cccCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHH
Confidence 5556999999988763 44444432 346777776654
No 94
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.27 E-value=6.8e-11 Score=107.79 Aligned_cols=103 Identities=16% Similarity=0.089 Sum_probs=75.8
Q ss_pred CCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhc-CC------CCCCCCCEEEEEcCCCCCCCC-CC
Q psy7830 133 QNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKIS-RP------DLLQSKTLEFILKDARWGHAE-GG 202 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~-~~------~~l~~~~v~~~~~D~~~~~~~-~~ 202 (364)
.++.+|||+|||.|..+..+|.+ .|+|+|+|+.+++.+.+..... .. +.....+++++++|+.+.... .+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 57789999999999999999999 9999999999999864422110 00 000124799999999876542 35
Q ss_pred CeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEc
Q psy7830 203 PYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVG 235 (364)
Q Consensus 203 ~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~ 235 (364)
+||.|+-...+.+ .++.+.++|||||++++...
T Consensus 113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred CcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 7999886655433 56789999999998666543
No 95
>PRK06922 hypothetical protein; Provisional
Probab=99.27 E-value=4.2e-11 Score=123.27 Aligned_cols=97 Identities=23% Similarity=0.245 Sum_probs=79.4
Q ss_pred CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC--CCCCCeeE
Q psy7830 133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH--AEGGPYDV 206 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~--~~~~~fD~ 206 (364)
.++.+|||+|||+|..+..+++. +|+|+|+|+.|++.|+++..... .++.++++|+...+ ..+++||+
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g------~~ie~I~gDa~dLp~~fedeSFDv 490 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG------RSWNVIKGDAINLSSSFEKESVDT 490 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC------CCeEEEEcchHhCccccCCCCEEE
Confidence 46889999999999999888764 99999999999999998875521 36888999987654 34578999
Q ss_pred EEEccChHH-------------------HHHHHHhccCCCcEEEEEEc
Q psy7830 207 IFFGAGTTE-------------------VSKTILSQLKPNGRIVAPVG 235 (364)
Q Consensus 207 Ii~~~~~~~-------------------l~~~l~~~LkpGG~Lvi~~~ 235 (364)
|+++..+++ +++++.+.|||||++++..+
T Consensus 491 VVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 491 IVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 998865543 45788999999999999764
No 96
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.27 E-value=9.1e-11 Score=105.76 Aligned_cols=112 Identities=15% Similarity=0.102 Sum_probs=83.6
Q ss_pred HHHHHHHHHhccCCCCCEEEEECCCccHHHHHH-Hcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830 120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAK-EWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW 196 (364)
Q Consensus 120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~l-a~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~ 196 (364)
+...+++++.. ..++.+|||+|||+|.+++.+ ++. +|+++|+++.+++.+++|++.+ +..+++++.+|+..
T Consensus 40 v~e~l~~~l~~-~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~-----~~~~v~~~~~D~~~ 113 (199)
T PRK10909 40 VRETLFNWLAP-VIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATL-----KAGNARVVNTNALS 113 (199)
T ss_pred HHHHHHHHHhh-hcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHh-----CCCcEEEEEchHHH
Confidence 44445666642 346789999999999999864 444 9999999999999999999883 34589999999875
Q ss_pred CCC-CCCCeeEEEEccChH-----HHHHHHHh--ccCCCcEEEEEEcCC
Q psy7830 197 GHA-EGGPYDVIFFGAGTT-----EVSKTILS--QLKPNGRIVAPVGNV 237 (364)
Q Consensus 197 ~~~-~~~~fD~Ii~~~~~~-----~l~~~l~~--~LkpGG~Lvi~~~~~ 237 (364)
... ...+||+|++|.++. .+++.+.. .|+|+|.++++....
T Consensus 114 ~l~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 114 FLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred HHhhcCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 432 234699999999952 23444443 378999999987653
No 97
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.26 E-value=7.5e-11 Score=106.87 Aligned_cols=99 Identities=12% Similarity=0.095 Sum_probs=72.8
Q ss_pred HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830 122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG 197 (364)
Q Consensus 122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~ 197 (364)
..+.+.+. .+.++.+|||+|||+|..+..+++. +++|+|+|+.+++.|+++. +++.+..+|+..
T Consensus 32 ~~~~~~l~-~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~----------~~~~~~~~d~~~- 99 (204)
T TIGR03587 32 AMFARALN-RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL----------PNINIIQGSLFD- 99 (204)
T ss_pred HHHHHHHH-hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC----------CCCcEEEeeccC-
Confidence 33333333 3567889999999999999988764 8999999999999998864 356778888877
Q ss_pred CCCCCCeeEEEEccChHHH--------HHHHHhccCCCcEEEEEE
Q psy7830 198 HAEGGPYDVIFFGAGTTEV--------SKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 198 ~~~~~~fD~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi~~ 234 (364)
+..+++||+|+++..++++ ++++.+.+ ++.+++..
T Consensus 100 ~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 100 PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 4456789999999888663 24444444 44555544
No 98
>PRK05785 hypothetical protein; Provisional
Probab=99.26 E-value=5.5e-11 Score=109.43 Aligned_cols=92 Identities=12% Similarity=0.099 Sum_probs=73.8
Q ss_pred HHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC
Q psy7830 123 RCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA 199 (364)
Q Consensus 123 ~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~ 199 (364)
.+++.+..+..++.+|||+|||+|.++..+++. +|+|+|+|++|++.|+++. .++++|+...+.
T Consensus 40 ~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~-------------~~~~~d~~~lp~ 106 (226)
T PRK05785 40 ELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD-------------DKVVGSFEALPF 106 (226)
T ss_pred HHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc-------------ceEEechhhCCC
Confidence 344444433346789999999999999998876 8999999999999987631 246788888877
Q ss_pred CCCCeeEEEEccChHH------HHHHHHhccCCC
Q psy7830 200 EGGPYDVIFFGAGTTE------VSKTILSQLKPN 227 (364)
Q Consensus 200 ~~~~fD~Ii~~~~~~~------l~~~l~~~LkpG 227 (364)
.+++||+|+++..+++ .++++.++|||.
T Consensus 107 ~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 107 RDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred CCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence 7789999999887764 678999999994
No 99
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.25 E-value=9.2e-11 Score=107.16 Aligned_cols=106 Identities=16% Similarity=0.128 Sum_probs=80.9
Q ss_pred HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830 120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG 197 (364)
Q Consensus 120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~ 197 (364)
+...+++++.....++.+|||+|||+|.++..++.. +|+|+|+++.+++.|++++.... . ..++.+.++|+...
T Consensus 41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~---~-~~~i~~~~~d~~~~ 116 (219)
T TIGR02021 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRD---V-AGNVEFEVNDLLSL 116 (219)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---C-CCceEEEECChhhC
Confidence 456667776532456889999999999999999887 99999999999999999987622 1 14799999998765
Q ss_pred CCCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEE
Q psy7830 198 HAEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVA 232 (364)
Q Consensus 198 ~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi 232 (364)
. ++||+|++...+.+ ++.++.+.+++++.+.+
T Consensus 117 ~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 117 C---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred C---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3 68999998766543 35667777776655544
No 100
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.25 E-value=6.5e-11 Score=116.05 Aligned_cols=110 Identities=20% Similarity=0.214 Sum_probs=90.1
Q ss_pred HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830 122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG 197 (364)
Q Consensus 122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~ 197 (364)
..+++.+. ...+..+||||||+|.++..+|.. .++|+|+++.+++.+.+++.. .+..|+.++.+|+...
T Consensus 112 ~~~~~~~~--~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~-----~gL~NV~~i~~DA~~l 184 (390)
T PRK14121 112 DNFLDFIS--KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIEL-----LNLKNLLIINYDARLL 184 (390)
T ss_pred HHHHHHhc--CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHH-----cCCCcEEEEECCHHHh
Confidence 34555554 345679999999999999999987 899999999999999999877 3357999999998643
Q ss_pred --CCCCCCeeEEEEccChH------------HHHHHHHhccCCCcEEEEEEcCCC
Q psy7830 198 --HAEGGPYDVIFFGAGTT------------EVSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 198 --~~~~~~fD~Ii~~~~~~------------~l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
...++++|.|+++.+.+ .++..+.+.|+|||.+.+.+....
T Consensus 185 l~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~ 239 (390)
T PRK14121 185 LELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSEL 239 (390)
T ss_pred hhhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHH
Confidence 23457899999988764 468899999999999999886654
No 101
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.25 E-value=2.6e-11 Score=107.18 Aligned_cols=96 Identities=19% Similarity=0.267 Sum_probs=79.6
Q ss_pred cCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC--CCCCCee
Q psy7830 131 HLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH--AEGGPYD 205 (364)
Q Consensus 131 ~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~--~~~~~fD 205 (364)
.+++|.+|||+|||.|.+...|.+. +.+|+|++++.+..+.++ .+.++++|+.... +++++||
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r------------Gv~Viq~Dld~gL~~f~d~sFD 77 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR------------GVSVIQGDLDEGLADFPDQSFD 77 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc------------CCCEEECCHHHhHhhCCCCCcc
Confidence 3679999999999999999998876 899999999998877653 5678999987654 4568999
Q ss_pred EEEEccChHHHH---HHHHhccCCCcEEEEEEcCCC
Q psy7830 206 VIFFGAGTTEVS---KTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 206 ~Ii~~~~~~~l~---~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
.|+.+..++++. .-+.++|+-|...+++.++-+
T Consensus 78 ~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVsFPNFg 113 (193)
T PF07021_consen 78 YVILSQTLQAVRRPDEVLEEMLRVGRRAIVSFPNFG 113 (193)
T ss_pred EEehHhHHHhHhHHHHHHHHHHHhcCeEEEEecChH
Confidence 999999998753 346677888999999998864
No 102
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.25 E-value=1.1e-10 Score=107.10 Aligned_cols=110 Identities=23% Similarity=0.283 Sum_probs=86.2
Q ss_pred HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC
Q psy7830 120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA 194 (364)
Q Consensus 120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~ 194 (364)
....++..+. ..++.+|||+|||+|..+..++.. +++++|+++.+++.+++++.... . ..++.+..+|+
T Consensus 39 ~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~---~-~~~~~~~~~d~ 112 (239)
T PRK00216 39 WRRKTIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG---L-SGNVEFVQGDA 112 (239)
T ss_pred HHHHHHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc---c-ccCeEEEeccc
Confidence 3345566555 457889999999999999888764 89999999999999999876521 1 24789999998
Q ss_pred CCCCCCCCCeeEEEEccChH------HHHHHHHhccCCCcEEEEEEc
Q psy7830 195 RWGHAEGGPYDVIFFGAGTT------EVSKTILSQLKPNGRIVAPVG 235 (364)
Q Consensus 195 ~~~~~~~~~fD~Ii~~~~~~------~l~~~l~~~LkpGG~Lvi~~~ 235 (364)
.......+.||+|+++..++ .++..+.+.|+|||++++...
T Consensus 113 ~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 113 EALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred ccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 87665557899998876543 467899999999999987543
No 103
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.21 E-value=1e-10 Score=118.97 Aligned_cols=104 Identities=18% Similarity=0.192 Sum_probs=81.8
Q ss_pred HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC--C
Q psy7830 122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW--G 197 (364)
Q Consensus 122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~--~ 197 (364)
..+++.+. ..++.+|||+|||+|.++..+++. +|+|+|+++.+++.+++.... .++++++++|+.. .
T Consensus 27 ~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~-------~~~i~~~~~d~~~~~~ 97 (475)
T PLN02336 27 PEILSLLP--PYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGH-------YKNVKFMCADVTSPDL 97 (475)
T ss_pred hHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhcc-------CCceEEEEeccccccc
Confidence 44455554 346789999999999999999987 999999999999887653221 2589999999863 3
Q ss_pred CCCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEE
Q psy7830 198 HAEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 198 ~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~ 234 (364)
+...++||+|+++.++++ ++.++.+.|||||++++..
T Consensus 98 ~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 98 NISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred CCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 334578999999887654 5678999999999999864
No 104
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.21 E-value=1.1e-10 Score=117.81 Aligned_cols=109 Identities=20% Similarity=0.215 Sum_probs=85.5
Q ss_pred HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC-
Q psy7830 122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH- 198 (364)
Q Consensus 122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~- 198 (364)
..+++++. +.++.+|||+|||+|.+++.+++. +|+|+|+|+.+++.|++|+..+. ..+++++.+|+.+..
T Consensus 287 ~~vl~~l~--~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~-----~~~v~~~~~d~~~~l~ 359 (443)
T PRK13168 287 ARALEWLD--PQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNG-----LDNVTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHhc--CCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEEeChHHhhh
Confidence 34444443 467889999999999999999987 99999999999999999998733 458999999986532
Q ss_pred ---CCCCCeeEEEEccChH---HHHHHHHhccCCCcEEEEEEcCCC
Q psy7830 199 ---AEGGPYDVIFFGAGTT---EVSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 199 ---~~~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
..+++||+|++|.+.. .+++.+.+ ++|++.+++++.+..
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvSCnp~t 404 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRAGAAEVMQALAK-LGPKRIVYVSCNPAT 404 (443)
T ss_pred hhhhhcCCCCEEEECcCCcChHHHHHHHHh-cCCCeEEEEEeChHH
Confidence 1235799999997754 44444444 689999999997764
No 105
>PLN03075 nicotianamine synthase; Provisional
Probab=99.21 E-value=2.5e-10 Score=108.17 Aligned_cols=99 Identities=18% Similarity=0.142 Sum_probs=77.0
Q ss_pred CCCCEEEEECCCccHHH-HHHH-cc----eEEEEeCCHHHHHHHHHHHHh-cCCCCCCCCCEEEEEcCCCCCCCCCCCee
Q psy7830 133 QNGSRVLDIGSGQGYMA-TAKE-WL----SSVRQLLLPETLNNSLKNIKI-SRPDLLQSKTLEFILKDARWGHAEGGPYD 205 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a-~~la-~~----~V~~vDis~~~l~~a~~~~~~-~~~~~l~~~~v~~~~~D~~~~~~~~~~fD 205 (364)
.++.+|+|||||+|.++ +.++ .. +++++|+|+++++.|++++.. .. + .++++|..+|+.+.....+.||
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~g---L-~~rV~F~~~Da~~~~~~l~~FD 197 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPD---L-SKRMFFHTADVMDVTESLKEYD 197 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccC---c-cCCcEEEECchhhcccccCCcC
Confidence 37789999999988554 3333 22 799999999999999999854 21 2 2479999999987643346899
Q ss_pred EEEEccCh-------HHHHHHHHhccCCCcEEEEEEc
Q psy7830 206 VIFFGAGT-------TEVSKTILSQLKPNGRIVAPVG 235 (364)
Q Consensus 206 ~Ii~~~~~-------~~l~~~l~~~LkpGG~Lvi~~~ 235 (364)
+|++.... ..+++.+.+.|+|||.+++...
T Consensus 198 lVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 198 VVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred EEEEecccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 99998421 2478999999999999998774
No 106
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.20 E-value=1.6e-10 Score=107.24 Aligned_cols=121 Identities=21% Similarity=0.241 Sum_probs=92.7
Q ss_pred CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC
Q psy7830 112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKT 186 (364)
Q Consensus 112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~ 186 (364)
.+-+--|.-.+.++.++. +.||++|||.|.|||.++..+++. +|+.+|+.++.++.|++|++... + .++
T Consensus 20 rtQIiYpkD~~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g---l-~~~ 93 (247)
T PF08704_consen 20 RTQIIYPKDISYILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG---L-DDN 93 (247)
T ss_dssp SS----HHHHHHHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT---C-CTT
T ss_pred CcceeeCchHHHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC---C-CCC
Confidence 444555666788888888 899999999999999999999976 99999999999999999999832 2 258
Q ss_pred EEEEEcCCCCCCCC---CCCeeEEEEccChHH-HHHHHHhcc-CCCcEEEEEEcCCC
Q psy7830 187 LEFILKDARWGHAE---GGPYDVIFFGAGTTE-VSKTILSQL-KPNGRIVAPVGNVW 238 (364)
Q Consensus 187 v~~~~~D~~~~~~~---~~~fD~Ii~~~~~~~-l~~~l~~~L-kpGG~Lvi~~~~~~ 238 (364)
+++...|+....+. ...+|.|+.+.+-+| .++.+.+.| |+||++++-.+.-.
T Consensus 94 v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ie 150 (247)
T PF08704_consen 94 VTVHHRDVCEEGFDEELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFSPCIE 150 (247)
T ss_dssp EEEEES-GGCG--STT-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEESSHH
T ss_pred ceeEecceecccccccccCcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCHH
Confidence 99999998643221 257999999999887 788999999 89999998887754
No 107
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.20 E-value=2.3e-10 Score=103.90 Aligned_cols=105 Identities=24% Similarity=0.309 Sum_probs=83.9
Q ss_pred HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830 122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW 196 (364)
Q Consensus 122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~ 196 (364)
..+++.+. ..++.+|||+|||+|..+..+++. +++++|+++.+++.++++... ..++++..+|+.+
T Consensus 29 ~~~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~-------~~~i~~~~~d~~~ 99 (223)
T TIGR01934 29 RRAVKLIG--VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL-------PLNIEFIQADAEA 99 (223)
T ss_pred HHHHHHhc--cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc-------CCCceEEecchhc
Confidence 44555554 357899999999999999988866 799999999999999988642 2478899999887
Q ss_pred CCCCCCCeeEEEEccChH------HHHHHHHhccCCCcEEEEEEc
Q psy7830 197 GHAEGGPYDVIFFGAGTT------EVSKTILSQLKPNGRIVAPVG 235 (364)
Q Consensus 197 ~~~~~~~fD~Ii~~~~~~------~l~~~l~~~LkpGG~Lvi~~~ 235 (364)
.....++||+|+++..++ .+++.+.+.|+|||++++...
T Consensus 100 ~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 100 LPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 665456899998876543 467899999999999997543
No 108
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.19 E-value=1.3e-10 Score=109.41 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=75.5
Q ss_pred CCCEEEEECCCccH----HHHHHHc--------c-eEEEEeCCHHHHHHHHHHHHh-----cCC------------C--C
Q psy7830 134 NGSRVLDIGSGQGY----MATAKEW--------L-SSVRQLLLPETLNNSLKNIKI-----SRP------------D--L 181 (364)
Q Consensus 134 ~g~~VLDiGcGsG~----~a~~la~--------~-~V~~vDis~~~l~~a~~~~~~-----~~~------------~--~ 181 (364)
++.+|+|+|||+|. +++.+++ . +|+|+|+|+.|++.|++..-. +.. + .
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 4444443 2 799999999999999985411 000 0 0
Q ss_pred C---CCCCEEEEEcCCCCCCCCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEcC
Q psy7830 182 L---QSKTLEFILKDARWGHAEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 182 l---~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
+ -..+|+|.+.|+.+.++..++||+|++..++.+ +++++.+.|+|||+|++....
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSE 244 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECcc
Confidence 0 013689999999887655678999999776643 678999999999999975544
No 109
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.19 E-value=3.8e-10 Score=103.06 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHhcc--CCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC
Q psy7830 118 PSYIARCLEQLVDH--LQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD 193 (364)
Q Consensus 118 P~~~a~~l~~L~~~--l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D 193 (364)
+..+..+.+.+..+ ...+.+|||+|||+|.++..+++. +++++|+++.+++.+++++.... ..++++...|
T Consensus 27 ~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~-----~~~~~~~~~d 101 (224)
T TIGR01983 27 PLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDP-----LLKIEYRCTS 101 (224)
T ss_pred HHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEeCC
Confidence 33445556655532 124789999999999999988877 99999999999999999887622 2368888888
Q ss_pred CCCCCCC-CCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcC
Q psy7830 194 ARWGHAE-GGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 194 ~~~~~~~-~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
+...... .++||+|+++..+++ ++..+.+.|++||.+++....
T Consensus 102 ~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 102 VEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred HHHhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 7765433 368999998766653 678999999999999987654
No 110
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.19 E-value=1.2e-10 Score=112.39 Aligned_cols=118 Identities=13% Similarity=0.072 Sum_probs=88.0
Q ss_pred ChHHHHHHHHHHHhccC--CCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830 116 EPPSYIARCLEQLVDHL--QNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL 191 (364)
Q Consensus 116 s~P~~~a~~l~~L~~~l--~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~ 191 (364)
..+.....+++.+.+.+ .++.+|||+|||+|.++..++.. +|+|+|+++.+++.|++|++.+. .++++++.
T Consensus 153 ~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~-----l~~v~~~~ 227 (315)
T PRK03522 153 TNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELG-----LTNVQFQA 227 (315)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEE
Confidence 34444455444333222 35789999999999999999988 99999999999999999998833 46899999
Q ss_pred cCCCCCCC-CCCCeeEEEEccChHHHH---HHHHhccCCCcEEEEEEcCCC
Q psy7830 192 KDARWGHA-EGGPYDVIFFGAGTTEVS---KTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 192 ~D~~~~~~-~~~~fD~Ii~~~~~~~l~---~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
+|+..... ..+.||+|++|.+...+. ..+...++|++++++++.+..
T Consensus 228 ~D~~~~~~~~~~~~D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t 278 (315)
T PRK03522 228 LDSTQFATAQGEVPDLVLVNPPRRGIGKELCDYLSQMAPRFILYSSCNAQT 278 (315)
T ss_pred cCHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHcCCCeEEEEECCccc
Confidence 99876432 235799999997754322 233444688999999998865
No 111
>PTZ00146 fibrillarin; Provisional
Probab=99.18 E-value=1.9e-10 Score=108.68 Aligned_cols=109 Identities=19% Similarity=0.205 Sum_probs=80.4
Q ss_pred HHHHHHHHHhcc-CCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC
Q psy7830 120 YIARCLEQLVDH-LQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD 193 (364)
Q Consensus 120 ~~a~~l~~L~~~-l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D 193 (364)
+.+.++.-+... ++++++|||+|||+|+++..++.. .|+++|+++.+.+...+.+.. .+||.++..|
T Consensus 117 laa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-------r~NI~~I~~D 189 (293)
T PTZ00146 117 LAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-------RPNIVPIIED 189 (293)
T ss_pred HHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-------cCCCEEEECC
Confidence 445554444322 689999999999999999999987 799999999876555544433 1488999999
Q ss_pred CCCCC---CCCCCeeEEEEccChHH----HHHHHHhccCCCcEEEEEEc
Q psy7830 194 ARWGH---AEGGPYDVIFFGAGTTE----VSKTILSQLKPNGRIVAPVG 235 (364)
Q Consensus 194 ~~~~~---~~~~~fD~Ii~~~~~~~----l~~~l~~~LkpGG~Lvi~~~ 235 (364)
+.... ...+.||+|+++....+ +..++.+.|||||.+++.+.
T Consensus 190 a~~p~~y~~~~~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ik 238 (293)
T PTZ00146 190 ARYPQKYRMLVPMVDVIFADVAQPDQARIVALNAQYFLKNGGHFIISIK 238 (293)
T ss_pred ccChhhhhcccCCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEEEe
Confidence 86421 11357999999876432 45678899999999999643
No 112
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.18 E-value=2.7e-10 Score=109.41 Aligned_cols=105 Identities=19% Similarity=0.197 Sum_probs=82.1
Q ss_pred HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830 121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW 196 (364)
Q Consensus 121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~ 196 (364)
...+++.+. +.++.+|||+|||+|.++..+++. +++++|. +.+++.+++++.... + .++++++.+|+..
T Consensus 138 ~~~l~~~~~--~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~g---l-~~rv~~~~~d~~~ 210 (306)
T TIGR02716 138 IQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG---V-ADRMRGIAVDIYK 210 (306)
T ss_pred HHHHHHHcC--CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCC---c-cceEEEEecCccC
Confidence 344555554 577889999999999999999877 8999997 799999999988722 1 2479999999875
Q ss_pred CCCCCCCeeEEEEccChH--------HHHHHHHhccCCCcEEEEEE
Q psy7830 197 GHAEGGPYDVIFFGAGTT--------EVSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 197 ~~~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~~ 234 (364)
... ..+|+|++...++ .+++++.+.|+|||++++..
T Consensus 211 ~~~--~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 211 ESY--PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred CCC--CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 433 2479987655443 36789999999999999865
No 113
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=99.18 E-value=1.6e-11 Score=116.62 Aligned_cols=175 Identities=21% Similarity=0.142 Sum_probs=125.1
Q ss_pred eeccCCCccchhhhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCCC--CccCCCc----cccccCCCceecCCCccC
Q psy7830 43 RSEMYDEDNENEENFFYTRSYADFLEGLKERKLLNHPRVEEAFYAVRRA--DFINVKP----KFGFCDIPYAFANQVVME 116 (364)
Q Consensus 43 ~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~a~~~v~R~--~~~p~~~----~~~y~d~~l~ig~g~~~s 116 (364)
+.+.+..++...|+|+.+.+++++.+.|.+.|....+. ...+-. ....... ...|.++.+.+++.+++
T Consensus 2 l~~~n~~~~~~iRvN~~k~~~~~~~~~L~~~g~~~~~~-----~~~~~~~~~~~~~~~~i~~l~~~~~G~~~vQd~sS~- 75 (283)
T PF01189_consen 2 LEANNCPPPVTIRVNTLKISREELLEELEEEGIQLEPI-----PRSPDALRVIGKSPYSICSLPEFKNGLFYVQDESSQ- 75 (283)
T ss_dssp HHHCTS--GEEEEE-TTTSSHHHHHHHHHHTTHEEEEE-----TSTTCEEEEEEECSSCGGGSHHHHTTSEEEHHHHHH-
T ss_pred ccccCCCCCeEEEECcCcCCHHHHHHHHhhcccceEEc-----ccccchhccccccccchhhchhhhCCcEEecccccc-
Confidence 34566677778899999999999999998887321110 000000 0011111 04677888888776544
Q ss_pred hHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830 117 PPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL 191 (364)
Q Consensus 117 ~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~ 191 (364)
+.+..+ . ..+|.+|||+++|+|..+..++.. .|++.|+++..+...++|+++ +|..++.+..
T Consensus 76 ---l~~~~L---~--~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r-----~g~~~v~~~~ 142 (283)
T PF01189_consen 76 ---LVALAL---D--PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKR-----LGVFNVIVIN 142 (283)
T ss_dssp ---HHHHHH---T--TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHH-----TT-SSEEEEE
T ss_pred ---cccccc---c--ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHh-----cCCceEEEEe
Confidence 444333 3 689999999999999999999887 899999999999999999999 5667899988
Q ss_pred cCCCCCC--CCCCCeeEEEEccChHH----------------------------HHHHHHhcc----CCCcEEEEEEcC
Q psy7830 192 KDARWGH--AEGGPYDVIFFGAGTTE----------------------------VSKTILSQL----KPNGRIVAPVGN 236 (364)
Q Consensus 192 ~D~~~~~--~~~~~fD~Ii~~~~~~~----------------------------l~~~l~~~L----kpGG~Lvi~~~~ 236 (364)
.|..... .....||.|+++.+|.. ++....+.+ ||||+||.++-+
T Consensus 143 ~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 143 ADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp SHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred eccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 8876542 11236999999988732 567888999 999999999855
No 114
>PLN02672 methionine S-methyltransferase
Probab=99.17 E-value=4.1e-10 Score=122.46 Aligned_cols=138 Identities=15% Similarity=0.098 Sum_probs=102.6
Q ss_pred ccccCCCceecCCCccChHHHHHHHHHHHhccCC---CCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHH
Q psy7830 100 FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQ---NGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLK 172 (364)
Q Consensus 100 ~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~---~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~ 172 (364)
..|....+.++.+..+++|.+. .+++.|..+.. ++.+|||+|||+|.+++.+++. +|+++|+|+.+++.|++
T Consensus 82 ~~F~~l~~~V~p~VLIPRpeTE-~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~ 160 (1082)
T PLN02672 82 RNRKKLTMMEIPSIFIPEDWSF-TFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWI 160 (1082)
T ss_pred EEecCCceeeCCCcccCchhHH-HHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence 4566677788889999999874 44555543211 2468999999999999999875 89999999999999999
Q ss_pred HHHhcCCCC-----------CCCCCEEEEEcCCCCCCCC-CCCeeEEEEccChH--------------------------
Q psy7830 173 NIKISRPDL-----------LQSKTLEFILKDARWGHAE-GGPYDVIFFGAGTT-------------------------- 214 (364)
Q Consensus 173 ~~~~~~~~~-----------l~~~~v~~~~~D~~~~~~~-~~~fD~Ii~~~~~~-------------------------- 214 (364)
|+..|.-.. ...++++++.+|....... ..+||+|++|.+.-
T Consensus 161 Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p 240 (1082)
T PLN02672 161 NLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSN 240 (1082)
T ss_pred HHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCc
Confidence 998742000 0124799999998765432 23699999986630
Q ss_pred ------------------HHHHHHHhccCCCcEEEEEEcCCC
Q psy7830 215 ------------------EVSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 215 ------------------~l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
.+.....+.|+|||.+++.++...
T Consensus 241 ~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q 282 (1082)
T PLN02672 241 YCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRP 282 (1082)
T ss_pred cccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccH
Confidence 133566679999999999998765
No 115
>PRK00811 spermidine synthase; Provisional
Probab=99.17 E-value=1.7e-10 Score=109.68 Aligned_cols=105 Identities=21% Similarity=0.176 Sum_probs=81.9
Q ss_pred CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC-CCCCeeEE
Q psy7830 133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA-EGGPYDVI 207 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~-~~~~fD~I 207 (364)
....+||++|||+|..+..+++. +|+++|+|+.+++.|++.+..........++++++.+|+..... ..++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45679999999999999988876 89999999999999999886511001234689999999876543 24689999
Q ss_pred EEccCh----------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830 208 FFGAGT----------TEVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 208 i~~~~~----------~~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
+++..- ..+.+.+.+.|+|||++++.....
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~ 194 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSP 194 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 997532 235678999999999999876553
No 116
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.17 E-value=4.5e-10 Score=102.79 Aligned_cols=101 Identities=15% Similarity=0.037 Sum_probs=74.7
Q ss_pred CCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhc-C------CCCCCCCCEEEEEcCCCCCCCCC-
Q psy7830 132 LQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKIS-R------PDLLQSKTLEFILKDARWGHAEG- 201 (364)
Q Consensus 132 l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~-~------~~~l~~~~v~~~~~D~~~~~~~~- 201 (364)
+.++.+|||+|||.|..+..||.. +|+|+|+++.+++.+.+..... . .......+|++.++|+.+.....
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 456789999999999999999999 9999999999999874321110 0 00011247999999998775432
Q ss_pred CCeeEEEEccChHH--------HHHHHHhccCCCcEEEE
Q psy7830 202 GPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVA 232 (364)
Q Consensus 202 ~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi 232 (364)
+.||.|+-...+.+ ....+.++|+|||++++
T Consensus 115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 57999986555433 46889999999997554
No 117
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.16 E-value=2.9e-10 Score=112.81 Aligned_cols=102 Identities=21% Similarity=0.221 Sum_probs=80.9
Q ss_pred CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC----CCCCee
Q psy7830 133 QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA----EGGPYD 205 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~----~~~~fD 205 (364)
.+|.+|||+|||+|.+++.++.. +|+++|+|+.+++.|++|+..|. ++..+++++.+|+.+... ..++||
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ng---l~~~~v~~i~~D~~~~l~~~~~~~~~fD 295 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNK---LDLSKAEFVRDDVFKLLRTYRDRGEKFD 295 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCCcEEEEEccHHHHHHHHHhcCCCCC
Confidence 46889999999999999876554 89999999999999999998854 333479999999876532 235799
Q ss_pred EEEEccCh---------------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830 206 VIFFGAGT---------------TEVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 206 ~Ii~~~~~---------------~~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
+|++|.+. ..+.....++|+|||.|+......
T Consensus 296 lVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~ 342 (396)
T PRK15128 296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSG 342 (396)
T ss_pred EEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 99999764 123456789999999999766543
No 118
>PRK04457 spermidine synthase; Provisional
Probab=99.16 E-value=3.2e-10 Score=106.62 Aligned_cols=100 Identities=17% Similarity=0.165 Sum_probs=79.5
Q ss_pred CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC-CCCeeEE
Q psy7830 133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE-GGPYDVI 207 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~-~~~fD~I 207 (364)
.++.+|||||||+|.++..+++. +|+++|+++++++.|++++.... ..++++++.+|+.+.... .++||+|
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~----~~~rv~v~~~Da~~~l~~~~~~yD~I 140 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE----NGERFEVIEADGAEYIAVHRHSTDVI 140 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC----CCCceEEEECCHHHHHHhCCCCCCEE
Confidence 45679999999999999988776 89999999999999999875411 125899999998654322 3579999
Q ss_pred EEccCh----------HHHHHHHHhccCCCcEEEEEEcC
Q psy7830 208 FFGAGT----------TEVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 208 i~~~~~----------~~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
+++..- ..+++.+.+.|+|||++++.+..
T Consensus 141 ~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 141 LVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred EEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 986421 35778999999999999986543
No 119
>KOG1271|consensus
Probab=99.15 E-value=1.8e-10 Score=100.04 Aligned_cols=117 Identities=17% Similarity=0.174 Sum_probs=88.0
Q ss_pred HHHHHHHhccCC-----C-CCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEE
Q psy7830 122 ARCLEQLVDHLQ-----N-GSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFI 190 (364)
Q Consensus 122 a~~l~~L~~~l~-----~-g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~ 190 (364)
.++++||.++.. . ..+|||+|||+|.+...|++. ..+|+|.++.+++.|+..+++.. .+| |+|.
T Consensus 49 ~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~-----~~n~I~f~ 123 (227)
T KOG1271|consen 49 ERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG-----FSNEIRFQ 123 (227)
T ss_pred HHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC-----CCcceeEE
Confidence 556666654432 2 339999999999999999987 69999999999999988777732 344 9999
Q ss_pred EcCCCCCCCCCCCeeEEEEccChH--------------HHHHHHHhccCCCcEEEEEEcCCCcceEE
Q psy7830 191 LKDARWGHAEGGPYDVIFFGAGTT--------------EVSKTILSQLKPNGRIVAPVGNVWRQNLS 243 (364)
Q Consensus 191 ~~D~~~~~~~~~~fD~Ii~~~~~~--------------~l~~~l~~~LkpGG~Lvi~~~~~~~~~l~ 243 (364)
+.|+.......++||+|+--..+. -.+..+.++|+|||+++|..-+....++.
T Consensus 124 q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv 190 (227)
T KOG1271|consen 124 QLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELV 190 (227)
T ss_pred EeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHH
Confidence 999987654457899886332221 13567889999999999988876654443
No 120
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.15 E-value=4.2e-10 Score=102.23 Aligned_cols=107 Identities=26% Similarity=0.327 Sum_probs=85.8
Q ss_pred HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE-cCC
Q psy7830 121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL-KDA 194 (364)
Q Consensus 121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~-~D~ 194 (364)
+..++..|.. ..+..+|||||++.||.+++++.. +++++|+++++.+.|++|+++.. + .++|+++. +|+
T Consensus 47 ~g~~L~~L~~-~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag---~-~~~i~~~~~gda 121 (219)
T COG4122 47 TGALLRLLAR-LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG---V-DDRIELLLGGDA 121 (219)
T ss_pred HHHHHHHHHH-hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC---C-cceEEEEecCcH
Confidence 3555555553 567889999999999999999987 79999999999999999999922 2 23588888 587
Q ss_pred CCCCC--CCCCeeEEEEccCh---HHHHHHHHhccCCCcEEEE
Q psy7830 195 RWGHA--EGGPYDVIFFGAGT---TEVSKTILSQLKPNGRIVA 232 (364)
Q Consensus 195 ~~~~~--~~~~fD~Ii~~~~~---~~l~~~l~~~LkpGG~Lvi 232 (364)
.+... ..++||+||.+..- ...++.+.++|+|||.+|+
T Consensus 122 l~~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 122 LDVLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred HHHHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEE
Confidence 65443 25799999998765 4577889999999999986
No 121
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.14 E-value=5.2e-10 Score=103.00 Aligned_cols=99 Identities=20% Similarity=0.194 Sum_probs=80.1
Q ss_pred CCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC-CCCCeeEEE
Q psy7830 132 LQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA-EGGPYDVIF 208 (364)
Q Consensus 132 l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~-~~~~fD~Ii 208 (364)
..++.+|||+|||+|.++..+++. +|+++|+++.+++.+++++.... .++.+...|...... ..++||+|+
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~~~~~fD~Ii 119 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESG------LKIDYRQTTAEELAAEHPGQFDVVT 119 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcC------CceEEEecCHHHhhhhcCCCccEEE
Confidence 457889999999999999988877 99999999999999999886622 257788888765531 246899999
Q ss_pred EccChH------HHHHHHHhccCCCcEEEEEEcC
Q psy7830 209 FGAGTT------EVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 209 ~~~~~~------~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
++..++ .++..+.+.|+|||++++....
T Consensus 120 ~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 120 CMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred EhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 876554 3678999999999999987654
No 122
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.14 E-value=2.5e-10 Score=103.86 Aligned_cols=90 Identities=18% Similarity=0.175 Sum_probs=70.9
Q ss_pred CCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC--------
Q psy7830 132 LQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH-------- 198 (364)
Q Consensus 132 l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~-------- 198 (364)
++++.+|||+|||+|.++..+++. +|+++|+++ + .. .++++++++|+....
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~~-------~~~v~~i~~D~~~~~~~~~i~~~ 112 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------DP-------IVGVDFLQGDFRDELVLKALLER 112 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------cC-------CCCcEEEecCCCChHHHHHHHHH
Confidence 578999999999999999888775 799999998 1 11 247899999988742
Q ss_pred CCCCCeeEEEEccCh-----------------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830 199 AEGGPYDVIFFGAGT-----------------TEVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 199 ~~~~~fD~Ii~~~~~-----------------~~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
...++||+|+++... ..++..+.+.|||||.+++.+...
T Consensus 113 ~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 113 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 235689999997632 235688999999999999966543
No 123
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=4.3e-10 Score=98.67 Aligned_cols=93 Identities=23% Similarity=0.256 Sum_probs=74.2
Q ss_pred CccChHHHHHHHHHHHh-ccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEE
Q psy7830 113 VVMEPPSYIARCLEQLV-DHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLE 188 (364)
Q Consensus 113 ~~~s~P~~~a~~l~~L~-~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~ 188 (364)
|..+.+.+++.++.... .-.-.|.+|+|+|||||.+++..+-+ +|+|+|+|+++++.+++|+.++. .+++
T Consensus 23 QY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~------g~v~ 96 (198)
T COG2263 23 QYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL------GDVE 96 (198)
T ss_pred ecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC------CceE
Confidence 44455556666665553 11246778999999999999888877 99999999999999999998832 4899
Q ss_pred EEEcCCCCCCCCCCCeeEEEEccChH
Q psy7830 189 FILKDARWGHAEGGPYDVIFFGAGTT 214 (364)
Q Consensus 189 ~~~~D~~~~~~~~~~fD~Ii~~~~~~ 214 (364)
++.+|+... .+++|.++.|.++-
T Consensus 97 f~~~dv~~~---~~~~dtvimNPPFG 119 (198)
T COG2263 97 FVVADVSDF---RGKFDTVIMNPPFG 119 (198)
T ss_pred EEEcchhhc---CCccceEEECCCCc
Confidence 999999766 35799999998873
No 124
>PLN02476 O-methyltransferase
Probab=99.14 E-value=3.7e-10 Score=106.40 Aligned_cols=107 Identities=20% Similarity=0.256 Sum_probs=86.1
Q ss_pred HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC
Q psy7830 121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR 195 (364)
Q Consensus 121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~ 195 (364)
...++..+.. ..+..+|||+|||+|+.+++++.. +|+++|.+++.++.|++++++.. +. ++|+++.+|+.
T Consensus 106 ~g~lL~~L~~-~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG---l~-~~I~li~GdA~ 180 (278)
T PLN02476 106 QAQLLAMLVQ-ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG---VS-HKVNVKHGLAA 180 (278)
T ss_pred HHHHHHHHHH-hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CC-CcEEEEEcCHH
Confidence 3555665553 556889999999999999999874 89999999999999999999832 22 58999999986
Q ss_pred CCCCC------CCCeeEEEEccChH---HHHHHHHhccCCCcEEEE
Q psy7830 196 WGHAE------GGPYDVIFFGAGTT---EVSKTILSQLKPNGRIVA 232 (364)
Q Consensus 196 ~~~~~------~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi 232 (364)
+.... .++||+|+.+..-. ..++.+.++|+|||.+++
T Consensus 181 e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 181 ESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred HHHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 54321 25899999998764 456788899999999886
No 125
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.12 E-value=2e-10 Score=104.02 Aligned_cols=109 Identities=28% Similarity=0.344 Sum_probs=84.7
Q ss_pred HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC
Q psy7830 120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA 194 (364)
Q Consensus 120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~ 194 (364)
....++..+.. .....+||||||++||.+++++.. +|+++|++++..+.|++++++.. + .++|+++.+|+
T Consensus 32 ~~g~lL~~l~~-~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag---~-~~~I~~~~gda 106 (205)
T PF01596_consen 32 ETGQLLQMLVR-LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG---L-DDRIEVIEGDA 106 (205)
T ss_dssp HHHHHHHHHHH-HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT---G-GGGEEEEES-H
T ss_pred HHHHHHHHHHH-hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC---C-CCcEEEEEecc
Confidence 34566666653 456679999999999999999975 99999999999999999998822 2 25899999998
Q ss_pred CCCCC----C--CCCeeEEEEccChH---HHHHHHHhccCCCcEEEEE
Q psy7830 195 RWGHA----E--GGPYDVIFFGAGTT---EVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 195 ~~~~~----~--~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~ 233 (364)
.+... . .++||+|+.+..-. ..++.+.++|+|||.+++-
T Consensus 107 ~~~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 107 LEVLPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp HHHHHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred HhhHHHHHhccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEc
Confidence 65321 1 25799999998764 3567788999999999863
No 126
>PRK06202 hypothetical protein; Provisional
Probab=99.12 E-value=5.5e-10 Score=103.00 Aligned_cols=92 Identities=16% Similarity=0.078 Sum_probs=68.4
Q ss_pred CCCCEEEEECCCccHHHHHHHcc--------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCe
Q psy7830 133 QNGSRVLDIGSGQGYMATAKEWL--------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPY 204 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la~~--------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~f 204 (364)
.++.+|||+|||+|.++..+++. +|+|+|+++.|++.|+++... .++++...++......+++|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~--------~~~~~~~~~~~~l~~~~~~f 130 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR--------PGVTFRQAVSDELVAEGERF 130 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc--------CCCeEEEEecccccccCCCc
Confidence 56789999999999998887641 899999999999999887543 34566666554444345789
Q ss_pred eEEEEccChHH--------HHHHHHhccCCCcEEEEEE
Q psy7830 205 DVIFFGAGTTE--------VSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 205 D~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~ 234 (364)
|+|+++..+++ +++++.+.++ |.+++..
T Consensus 131 D~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 131 DVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred cEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEec
Confidence 99999988765 4567777777 4444443
No 127
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.12 E-value=1.1e-09 Score=100.46 Aligned_cols=89 Identities=18% Similarity=0.195 Sum_probs=68.5
Q ss_pred HHHHHHHHHhcc-CCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830 120 YIARCLEQLVDH-LQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW 196 (364)
Q Consensus 120 ~~a~~l~~L~~~-l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~ 196 (364)
+...+++++... ..++.+|||+|||+|.++..+++. +|+++|+++.+++.|++++.... . ..++.+..+|...
T Consensus 48 ~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~---~-~~~i~~~~~d~~~ 123 (230)
T PRK07580 48 MRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAG---L-AGNITFEVGDLES 123 (230)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC---C-ccCcEEEEcCchh
Confidence 445566666521 356789999999999999999877 99999999999999999887622 1 1478999999432
Q ss_pred CCCCCCCeeEEEEccChHH
Q psy7830 197 GHAEGGPYDVIFFGAGTTE 215 (364)
Q Consensus 197 ~~~~~~~fD~Ii~~~~~~~ 215 (364)
..++||+|++...+++
T Consensus 124 ---~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 124 ---LLGRFDTVVCLDVLIH 139 (230)
T ss_pred ---ccCCcCEEEEcchhhc
Confidence 2468999998877643
No 128
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.11 E-value=4.1e-10 Score=119.56 Aligned_cols=102 Identities=18% Similarity=0.191 Sum_probs=83.4
Q ss_pred CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC-CCCeeEEE
Q psy7830 133 QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE-GGPYDVIF 208 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~-~~~fD~Ii 208 (364)
.+|.+|||+|||+|.+++.++.. +|+++|+|+.+++.|++|+..|. +...+++++++|+.+.... ..+||+|+
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng---~~~~~v~~i~~D~~~~l~~~~~~fDlIi 613 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNG---LSGRQHRLIQADCLAWLKEAREQFDLIF 613 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCccceEEEEccHHHHHHHcCCCcCEEE
Confidence 45889999999999999999976 79999999999999999998854 3324799999998754321 35899999
Q ss_pred EccCh-----------------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830 209 FGAGT-----------------TEVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 209 ~~~~~-----------------~~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
+|.+. ..+...+.++|+|||.++++....
T Consensus 614 lDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~ 659 (702)
T PRK11783 614 IDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR 659 (702)
T ss_pred ECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 98763 235677889999999999877654
No 129
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.10 E-value=1.2e-09 Score=85.13 Aligned_cols=92 Identities=25% Similarity=0.249 Sum_probs=74.6
Q ss_pred EEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC-CCCCeeEEEEccC
Q psy7830 137 RVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA-EGGPYDVIFFGAG 212 (364)
Q Consensus 137 ~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~-~~~~fD~Ii~~~~ 212 (364)
+|+|+|||+|..+..++.. +++++|+++.+++.+++....+ ...++.++..|..+... ..++||+|+++.+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-----LADNVEVLKGDAEELPPEADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc-----cccceEEEEcChhhhccccCCceEEEEEccc
Confidence 4899999999999988874 9999999999999998644331 23578999999877653 3468999999887
Q ss_pred hH-------HHHHHHHhccCCCcEEEEE
Q psy7830 213 TT-------EVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 213 ~~-------~l~~~l~~~LkpGG~Lvi~ 233 (364)
++ .+++.+.+.|++||.+++.
T Consensus 76 ~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 63 3668888999999999976
No 130
>PLN02366 spermidine synthase
Probab=99.10 E-value=7.7e-10 Score=106.16 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=81.8
Q ss_pred CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHh-cCCCCCCCCCEEEEEcCCCCCCCC--CCCee
Q psy7830 133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKI-SRPDLLQSKTLEFILKDARWGHAE--GGPYD 205 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~-~~~~~l~~~~v~~~~~D~~~~~~~--~~~fD 205 (364)
....+||+||||.|..+..+++. +|+.+|+|+.+++.+++.+.. +. .+..++++++.+|+...... .++||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~--~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAV--GFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhcc--ccCCCceEEEEChHHHHHhhccCCCCC
Confidence 45789999999999999999876 899999999999999998765 11 13356899999998654322 35799
Q ss_pred EEEEccCh----------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830 206 VIFFGAGT----------TEVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 206 ~Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
+|+++... ..+.+.+.+.|+|||+++....+.
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~ 209 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESM 209 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCc
Confidence 99997543 236788999999999998766543
No 131
>KOG1541|consensus
Probab=99.09 E-value=6.6e-10 Score=99.35 Aligned_cols=110 Identities=23% Similarity=0.203 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHhccCCC--CCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830 117 PPSYIARCLEQLVDHLQN--GSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK 192 (364)
Q Consensus 117 ~P~~~a~~l~~L~~~l~~--g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~ 192 (364)
+-.+..++++.|. ++. ..-|||||||||..+..+... ..+|+|||+.|++.|.++--+ -.++.+
T Consensus 33 Q~em~eRaLELLa--lp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~e----------gdlil~ 100 (270)
T KOG1541|consen 33 QAEMAERALELLA--LPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELE----------GDLILC 100 (270)
T ss_pred hHHHHHHHHHHhh--CCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhh----------cCeeee
Confidence 4447899999987 555 567999999999999988877 899999999999999873211 236777
Q ss_pred CCCCC-CCCCCCeeEEEEccChHH-----------------HHHHHHhccCCCcEEEEEEcCCC
Q psy7830 193 DARWG-HAEGGPYDVIFFGAGTTE-----------------VSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 193 D~~~~-~~~~~~fD~Ii~~~~~~~-----------------l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
|+-.. ++..+.||-+|+..+++| +...++..|++|++.|+..-+..
T Consensus 101 DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen 164 (270)
T KOG1541|consen 101 DMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPEN 164 (270)
T ss_pred ecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccc
Confidence 77543 455689999988776655 34578899999999999887655
No 132
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.09 E-value=9.6e-10 Score=105.47 Aligned_cols=113 Identities=17% Similarity=0.127 Sum_probs=79.2
Q ss_pred HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC
Q psy7830 121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR 195 (364)
Q Consensus 121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~ 195 (364)
.......+...+.++.+|||+|||+|..+..+++. +|+++|+|++|++.+++++.... ..-++.++++|+.
T Consensus 50 l~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~----p~~~v~~i~gD~~ 125 (301)
T TIGR03438 50 LERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY----PQLEVHGICADFT 125 (301)
T ss_pred HHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC----CCceEEEEEEccc
Confidence 34444444444567889999999999999888755 79999999999999999876521 1125777899987
Q ss_pred CCCCCCC-----CeeEEEEccChH--------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830 196 WGHAEGG-----PYDVIFFGAGTT--------EVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 196 ~~~~~~~-----~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
+...... ...+++++..+. .+++.+.+.|+|||.+++.+...
T Consensus 126 ~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 126 QPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred chhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 5321111 223444433322 36789999999999999877543
No 133
>PHA03412 putative methyltransferase; Provisional
Probab=99.08 E-value=7.8e-10 Score=101.32 Aligned_cols=109 Identities=13% Similarity=0.066 Sum_probs=79.7
Q ss_pred CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-------eEEEEeCCHHHHHHHHHHHHhcCCCCCCC
Q psy7830 112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-------SSVRQLLLPETLNNSLKNIKISRPDLLQS 184 (364)
Q Consensus 112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-------~V~~vDis~~~l~~a~~~~~~~~~~~l~~ 184 (364)
|+..+.+.++..+... ...+.+|||+|||+|.++..+++. +|+++|+++.+++.|++|.
T Consensus 31 GqFfTP~~iAr~~~i~----~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~---------- 96 (241)
T PHA03412 31 GAFFTPIGLARDFTID----ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV---------- 96 (241)
T ss_pred CccCCCHHHHHHHHHh----ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc----------
Confidence 6666666665555422 234779999999999999988752 8999999999999999875
Q ss_pred CCEEEEEcCCCCCCCCCCCeeEEEEccChH------------------HHHHHHHhccCCCcEEEEEEcC
Q psy7830 185 KTLEFILKDARWGHAEGGPYDVIFFGAGTT------------------EVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 185 ~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~------------------~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
.++.++.+|+..... +++||+|++|.++. .++....+++++|+ +|++...
T Consensus 97 ~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~ILP~~~ 164 (241)
T PHA03412 97 PEATWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGT-FIIPQMS 164 (241)
T ss_pred cCCEEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCE-EEeCccc
Confidence 357888999875543 46899999998763 14456666555555 5766544
No 134
>KOG2904|consensus
Probab=99.07 E-value=2.9e-09 Score=98.12 Aligned_cols=139 Identities=15% Similarity=0.157 Sum_probs=99.8
Q ss_pred CCccCCCccccccCCCceecCCCccChHHHH---HHHHHHHhcc-CCCCCEEEEECCCccHHHHHHHcc----eEEEEeC
Q psy7830 91 ADFINVKPKFGFCDIPYAFANQVVMEPPSYI---ARCLEQLVDH-LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLL 162 (364)
Q Consensus 91 ~~~~p~~~~~~y~d~~l~ig~g~~~s~P~~~---a~~l~~L~~~-l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDi 162 (364)
..++-++ .|.|-.+....|..+.+|.+- ..+++.+.+. ...+..+||+|||+|.++..+++. +|+++|.
T Consensus 104 QYIlg~~---~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~ 180 (328)
T KOG2904|consen 104 QYILGSQ---PFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDV 180 (328)
T ss_pred hheeccC---ccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEec
Confidence 3444444 677777888889999999763 3333333211 124557999999999999988876 9999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC----CCC-CCCCCeeEEEEccChHH----------------------
Q psy7830 163 LPETLNNSLKNIKISRPDLLQSKTLEFILKDAR----WGH-AEGGPYDVIFFGAGTTE---------------------- 215 (364)
Q Consensus 163 s~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~----~~~-~~~~~fD~Ii~~~~~~~---------------------- 215 (364)
|+.++..|.+|+.+.. + ..++.++.-++. ... ...+++|++++|.++-.
T Consensus 181 S~~Ai~La~eN~qr~~---l-~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdG 256 (328)
T KOG2904|consen 181 SKAAIKLAKENAQRLK---L-SGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDG 256 (328)
T ss_pred cHHHHHHHHHHHHHHh---h-cCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhcc
Confidence 9999999999999832 2 246777754433 222 22478999999977611
Q ss_pred ----------HHHHHHhccCCCcEEEEEEcC
Q psy7830 216 ----------VSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 216 ----------l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
+..-..++|+|||.+.+....
T Consensus 257 g~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~ 287 (328)
T KOG2904|consen 257 GLEGYDNLVHYWLLATRMLQPGGFEQLELVE 287 (328)
T ss_pred ccchhHHHHHHHHhhHhhcccCCeEEEEecc
Confidence 234667899999999999874
No 135
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.07 E-value=1.3e-09 Score=102.71 Aligned_cols=107 Identities=21% Similarity=0.135 Sum_probs=76.4
Q ss_pred HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEcCCCCC
Q psy7830 122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILKDARWG 197 (364)
Q Consensus 122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~D~~~~ 197 (364)
.++...+. .-.|.+|||||||+||.+..++.. .|+|+|.++...-+.+--..- ++.+. +.+...-++++
T Consensus 105 ~rl~p~l~--~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~-----lg~~~~~~~lplgvE~L 177 (315)
T PF08003_consen 105 DRLLPHLP--DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHF-----LGQDPPVFELPLGVEDL 177 (315)
T ss_pred HHHHhhhC--CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHH-----hCCCccEEEcCcchhhc
Confidence 44444443 246899999999999999999888 899999998876664332111 22223 33332334444
Q ss_pred CCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcC
Q psy7830 198 HAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 198 ~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
+. .+.||+|++-+++.| .+..+++.|++||.||+.+..
T Consensus 178 p~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlv 221 (315)
T PF08003_consen 178 PN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLV 221 (315)
T ss_pred cc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEee
Confidence 44 578999999988865 578999999999999987643
No 136
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.06 E-value=9.5e-10 Score=110.63 Aligned_cols=116 Identities=20% Similarity=0.262 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHhcc--CCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830 117 PPSYIARCLEQLVDH--LQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK 192 (364)
Q Consensus 117 ~P~~~a~~l~~L~~~--l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~ 192 (364)
.+.....+++.+.+. +.++.+|||+|||+|.+++.+++. +|+++|+++.+++.|++|+..+. ..|++++.+
T Consensus 273 N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~-----~~nv~~~~~ 347 (431)
T TIGR00479 273 NSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNG-----IANVEFLAG 347 (431)
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhC-----CCceEEEeC
Confidence 344444444443332 457789999999999999999987 99999999999999999998743 468999999
Q ss_pred CCCCCCC----CCCCeeEEEEccCh----HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830 193 DARWGHA----EGGPYDVIFFGAGT----TEVSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 193 D~~~~~~----~~~~fD~Ii~~~~~----~~l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
|+.+... ...+||+|+++.+- ..+++.+. .++|++.+++++.+..
T Consensus 348 d~~~~l~~~~~~~~~~D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyvsc~p~t 400 (431)
T TIGR00479 348 TLETVLPKQPWAGQIPDVLLLDPPRKGCAAEVLRTII-ELKPERIVYVSCNPAT 400 (431)
T ss_pred CHHHHHHHHHhcCCCCCEEEECcCCCCCCHHHHHHHH-hcCCCEEEEEcCCHHH
Confidence 9865321 23469999998764 34555544 4889999999876543
No 137
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.06 E-value=7.5e-10 Score=98.82 Aligned_cols=89 Identities=22% Similarity=0.245 Sum_probs=68.6
Q ss_pred CCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC--------
Q psy7830 132 LQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH-------- 198 (364)
Q Consensus 132 l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~-------- 198 (364)
+++|.+|||+|||+|.++..++.. +|+++|+++.+ . .++++++++|+.+..
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~-------~~~i~~~~~d~~~~~~~~~l~~~ 93 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------P-------IENVDFIRGDFTDEEVLNKIRER 93 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------c-------CCCceEEEeeCCChhHHHHHHHH
Confidence 578999999999999999888765 69999999864 1 136788888876532
Q ss_pred CCCCCeeEEEEccCh-----------------HHHHHHHHhccCCCcEEEEEEcC
Q psy7830 199 AEGGPYDVIFFGAGT-----------------TEVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 199 ~~~~~fD~Ii~~~~~-----------------~~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
...++||+|+++... ..++..+.+.|+|||++++....
T Consensus 94 ~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 94 VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred hCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 224579999987531 24677889999999999986543
No 138
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.05 E-value=9.8e-10 Score=98.58 Aligned_cols=94 Identities=16% Similarity=0.209 Sum_probs=70.5
Q ss_pred cCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC-C-CCCCCee
Q psy7830 131 HLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG-H-AEGGPYD 205 (364)
Q Consensus 131 ~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~-~-~~~~~fD 205 (364)
.++++.+|||+|||+|.++..++.. .++++|+++++++.++++ +++++.+|+... . ..+++||
T Consensus 10 ~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~------------~~~~~~~d~~~~l~~~~~~sfD 77 (194)
T TIGR02081 10 LIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR------------GVNVIQGDLDEGLEAFPDKSFD 77 (194)
T ss_pred hcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc------------CCeEEEEEhhhcccccCCCCcC
Confidence 3567889999999999999888765 789999999999887641 466778887652 1 3346899
Q ss_pred EEEEccChHHH---HHHHHhccCCCcEEEEEEcC
Q psy7830 206 VIFFGAGTTEV---SKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 206 ~Ii~~~~~~~l---~~~l~~~LkpGG~Lvi~~~~ 236 (364)
+|+++..++++ ...+.++++++|.++++++.
T Consensus 78 ~Vi~~~~l~~~~d~~~~l~e~~r~~~~~ii~~p~ 111 (194)
T TIGR02081 78 YVILSQTLQATRNPEEILDEMLRVGRHAIVSFPN 111 (194)
T ss_pred EEEEhhHhHcCcCHHHHHHHHHHhCCeEEEEcCC
Confidence 99999888764 23344556667777777654
No 139
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.05 E-value=2e-09 Score=103.69 Aligned_cols=93 Identities=17% Similarity=0.130 Sum_probs=69.7
Q ss_pred HHHHHHHHHhcc-CCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830 120 YIARCLEQLVDH-LQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW 196 (364)
Q Consensus 120 ~~a~~l~~L~~~-l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~ 196 (364)
++..+++++... ..++.+|||+|||+|.++..+++. +|+|+|+|+.|++.+++++........+..++++...|+..
T Consensus 129 ~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~ 208 (315)
T PLN02585 129 TVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES 208 (315)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh
Confidence 556677777532 135789999999999999999988 99999999999999999986521000112468888888754
Q ss_pred CCCCCCCeeEEEEccChHH
Q psy7830 197 GHAEGGPYDVIFFGAGTTE 215 (364)
Q Consensus 197 ~~~~~~~fD~Ii~~~~~~~ 215 (364)
. +++||+|++...+.|
T Consensus 209 l---~~~fD~Vv~~~vL~H 224 (315)
T PLN02585 209 L---SGKYDTVTCLDVLIH 224 (315)
T ss_pred c---CCCcCEEEEcCEEEe
Confidence 3 468999998776644
No 140
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.05 E-value=9.5e-10 Score=108.61 Aligned_cols=126 Identities=10% Similarity=0.040 Sum_probs=92.6
Q ss_pred ceecCCC-ccChHHHHHHHHHHHhccC--CCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCC
Q psy7830 107 YAFANQV-VMEPPSYIARCLEQLVDHL--QNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDL 181 (364)
Q Consensus 107 l~ig~g~-~~s~P~~~a~~l~~L~~~l--~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~ 181 (364)
+.+..++ ....+...+.+++.+...+ .++.+|||+|||+|.+++.++.. +|+++|+++.+++.|++|++.+.
T Consensus 203 ~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~--- 279 (374)
T TIGR02085 203 LVIRPQSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLG--- 279 (374)
T ss_pred EEECCCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcC---
Confidence 4444443 3344455555555444322 35789999999999999999877 99999999999999999998843
Q ss_pred CCCCCEEEEEcCCCCCCCC-CCCeeEEEEccChHH----HHHHHHhccCCCcEEEEEEcCCC
Q psy7830 182 LQSKTLEFILKDARWGHAE-GGPYDVIFFGAGTTE----VSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 182 l~~~~v~~~~~D~~~~~~~-~~~fD~Ii~~~~~~~----l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
.++++++.+|+...... ..+||+|++|.+... +++.+. .++|++.++++..+..
T Consensus 280 --~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G~~~~~l~~l~-~~~p~~ivyvsc~p~T 338 (374)
T TIGR02085 280 --LDNLSFAALDSAKFATAQMSAPELVLVNPPRRGIGKELCDYLS-QMAPKFILYSSCNAQT 338 (374)
T ss_pred --CCcEEEEECCHHHHHHhcCCCCCEEEECCCCCCCcHHHHHHHH-hcCCCeEEEEEeCHHH
Confidence 45899999998654321 246999999988653 334443 4799999999998765
No 141
>KOG4300|consensus
Probab=99.05 E-value=5.7e-10 Score=98.84 Aligned_cols=96 Identities=20% Similarity=0.238 Sum_probs=77.2
Q ss_pred CEEEEECCCccHHHHHHHc--c-eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEE-EEEcCCCCCC-CCCCCeeEEEEc
Q psy7830 136 SRVLDIGSGQGYMATAKEW--L-SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLE-FILKDARWGH-AEGGPYDVIFFG 210 (364)
Q Consensus 136 ~~VLDiGcGsG~~a~~la~--~-~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~-~~~~D~~~~~-~~~~~fD~Ii~~ 210 (364)
..|||+|||||..-...-. . +|+++|.++.|-+.+.+.+.++. ..++. |+.++.++++ .++++||.|++.
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k-----~~~~~~fvva~ge~l~~l~d~s~DtVV~T 152 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK-----PLQVERFVVADGENLPQLADGSYDTVVCT 152 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc-----CcceEEEEeechhcCcccccCCeeeEEEE
Confidence 3579999999987766553 2 99999999999999999887732 24666 8999998877 357899999876
Q ss_pred cCh------HHHHHHHHhccCCCcEEEEEEcC
Q psy7830 211 AGT------TEVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 211 ~~~------~~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
..+ ...+.++.++|||||++++..-.
T Consensus 153 lvLCSve~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 153 LVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred EEEeccCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 544 34789999999999999986644
No 142
>PHA03411 putative methyltransferase; Provisional
Probab=99.05 E-value=1.4e-09 Score=101.78 Aligned_cols=89 Identities=17% Similarity=0.130 Sum_probs=68.2
Q ss_pred CCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC
Q psy7830 111 NQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKT 186 (364)
Q Consensus 111 ~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~ 186 (364)
.|++.+.+.++...+ +. ...+.+|||+|||+|.++..++.. +|+++|+++.+++.+++++ ++
T Consensus 45 ~G~FfTP~~i~~~f~--~~--~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~----------~~ 110 (279)
T PHA03411 45 SGAFFTPEGLAWDFT--ID--AHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL----------PE 110 (279)
T ss_pred ceeEcCCHHHHHHHH--hc--cccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----------cC
Confidence 466665555543332 22 345679999999999999888664 8999999999999998864 36
Q ss_pred EEEEEcCCCCCCCCCCCeeEEEEccChH
Q psy7830 187 LEFILKDARWGHAEGGPYDVIFFGAGTT 214 (364)
Q Consensus 187 v~~~~~D~~~~~~~~~~fD~Ii~~~~~~ 214 (364)
++++.+|+..... ..+||+|++|.++.
T Consensus 111 v~~v~~D~~e~~~-~~kFDlIIsNPPF~ 137 (279)
T PHA03411 111 AEWITSDVFEFES-NEKFDVVISNPPFG 137 (279)
T ss_pred CEEEECchhhhcc-cCCCcEEEEcCCcc
Confidence 8899999987653 36899999998874
No 143
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.03 E-value=1.3e-09 Score=103.01 Aligned_cols=101 Identities=13% Similarity=0.029 Sum_probs=78.9
Q ss_pred ccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830 114 VMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL 191 (364)
Q Consensus 114 ~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~ 191 (364)
....+.++..+++.+. +.++.+|||+|||+|.++..+++. +|+++|+|+.+++.+++++.. ++++++.
T Consensus 24 fl~~~~i~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~--------~~v~~i~ 93 (272)
T PRK00274 24 FLIDENILDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE--------DNLTIIE 93 (272)
T ss_pred cCCCHHHHHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc--------CceEEEE
Confidence 3456667888888876 678899999999999999999988 999999999999999887632 5899999
Q ss_pred cCCCCCCCCCCCeeEEEEccChHHHHHHHHhcc
Q psy7830 192 KDARWGHAEGGPYDVIFFGAGTTEVSKTILSQL 224 (364)
Q Consensus 192 ~D~~~~~~~~~~fD~Ii~~~~~~~l~~~l~~~L 224 (364)
+|+......+-.+|.|++|.++.--.+-+.+.|
T Consensus 94 ~D~~~~~~~~~~~~~vv~NlPY~iss~ii~~~l 126 (272)
T PRK00274 94 GDALKVDLSELQPLKVVANLPYNITTPLLFHLL 126 (272)
T ss_pred ChhhcCCHHHcCcceEEEeCCccchHHHHHHHH
Confidence 999876543212589999988754333344444
No 144
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.02 E-value=1.4e-09 Score=102.66 Aligned_cols=102 Identities=20% Similarity=0.175 Sum_probs=78.6
Q ss_pred CCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC-CCCeeEEE
Q psy7830 134 NGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE-GGPYDVIF 208 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~-~~~fD~Ii 208 (364)
.+.+||++|||+|..+..+++. +|+++|+++.+++.+++++.... ..+..++++++.+|+...... .++||+|+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~-~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLA-GSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhc-ccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 4459999999999999888765 89999999999999999875511 013346789999998653322 36899999
Q ss_pred EccC----------hHHHHHHHHhccCCCcEEEEEEcC
Q psy7830 209 FGAG----------TTEVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 209 ~~~~----------~~~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
++.. ....++.+.+.|+|||++++....
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~ 188 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSES 188 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 8765 234567899999999999987544
No 145
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.02 E-value=3.2e-09 Score=99.29 Aligned_cols=105 Identities=22% Similarity=0.171 Sum_probs=84.7
Q ss_pred ccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830 114 VMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL 191 (364)
Q Consensus 114 ~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~ 191 (364)
++..+.++..+++.+. ..++.+|||+|||+|.++..+++. .|+++|+|+.+++.+++++.. .++++++.
T Consensus 11 fl~d~~i~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~-------~~~v~v~~ 81 (253)
T TIGR00755 11 FLIDESVIQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL-------YERLEVIE 81 (253)
T ss_pred cCCCHHHHHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc-------CCcEEEEE
Confidence 4567778888998876 678899999999999999999988 999999999999999987643 25899999
Q ss_pred cCCCCCCCCCCCee---EEEEccChHHHHHHHHhcc-CCCcE
Q psy7830 192 KDARWGHAEGGPYD---VIFFGAGTTEVSKTILSQL-KPNGR 229 (364)
Q Consensus 192 ~D~~~~~~~~~~fD---~Ii~~~~~~~l~~~l~~~L-kpGG~ 229 (364)
+|+...+.. .|| +|++|.+++...+.+.+++ .+|+.
T Consensus 82 ~D~~~~~~~--~~d~~~~vvsNlPy~i~~~il~~ll~~~~~~ 121 (253)
T TIGR00755 82 GDALKVDLP--DFPKQLKVVSNLPYNISSPLIFKLLEKPKFR 121 (253)
T ss_pred CchhcCChh--HcCCcceEEEcCChhhHHHHHHHHhccCCCc
Confidence 999876543 466 9999998876555566666 45544
No 146
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.02 E-value=1.5e-09 Score=103.66 Aligned_cols=105 Identities=21% Similarity=0.227 Sum_probs=83.6
Q ss_pred CCcc-ChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEE
Q psy7830 112 QVVM-EPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLE 188 (364)
Q Consensus 112 g~~~-s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~ 188 (364)
|++. ..|.++.++++.+. +.++.+|||||||+|.++..+++. +|+++|+|+.+++.+++++.... . .++++
T Consensus 15 GQnFL~d~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~---~-~~~v~ 88 (294)
T PTZ00338 15 GQHILKNPLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSP---L-ASKLE 88 (294)
T ss_pred CccccCCHHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcC---C-CCcEE
Confidence 4444 68888999999876 678999999999999999999887 89999999999999999987511 1 35899
Q ss_pred EEEcCCCCCCCCCCCeeEEEEccChHHHHHHHHhcc
Q psy7830 189 FILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQL 224 (364)
Q Consensus 189 ~~~~D~~~~~~~~~~fD~Ii~~~~~~~l~~~l~~~L 224 (364)
++.+|+..... ..||+|++|.++....+.+.++|
T Consensus 89 ii~~Dal~~~~--~~~d~VvaNlPY~Istpil~~ll 122 (294)
T PTZ00338 89 VIEGDALKTEF--PYFDVCVANVPYQISSPLVFKLL 122 (294)
T ss_pred EEECCHhhhcc--cccCEEEecCCcccCcHHHHHHH
Confidence 99999976543 46899999998864333344444
No 147
>PRK01581 speE spermidine synthase; Validated
Probab=99.01 E-value=2.6e-09 Score=103.62 Aligned_cols=105 Identities=18% Similarity=0.135 Sum_probs=79.5
Q ss_pred CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHH--HHhcCCCCCCCCCEEEEEcCCCCCCCC-CCCee
Q psy7830 133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKN--IKISRPDLLQSKTLEFILKDARWGHAE-GGPYD 205 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~--~~~~~~~~l~~~~v~~~~~D~~~~~~~-~~~fD 205 (364)
....+||++|||.|+.+..+++. +|++||+|+++++.|++. +....+..+..++++++.+|+...... .+.||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 44569999999999998888876 899999999999999962 211000113457999999999865432 46799
Q ss_pred EEEEccCh-----------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830 206 VIFFGAGT-----------TEVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 206 ~Ii~~~~~-----------~~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
+|+++..- ..+.+.+.+.|+|||++++.....
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp 271 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP 271 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh
Confidence 99998532 235688999999999999876544
No 148
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.00 E-value=3e-09 Score=98.88 Aligned_cols=106 Identities=22% Similarity=0.266 Sum_probs=84.1
Q ss_pred HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830 122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW 196 (364)
Q Consensus 122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~ 196 (364)
..++..+.. .....+|||||+++|+.+++++.. +|+++|.+++..+.|+++++... + .++|+++.+|+.+
T Consensus 68 g~lL~~l~~-~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag---~-~~~I~~~~G~a~e 142 (247)
T PLN02589 68 GQFLNMLLK-LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG---V-AHKIDFREGPALP 142 (247)
T ss_pred HHHHHHHHH-HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC---C-CCceEEEeccHHH
Confidence 455555553 445679999999999999999875 89999999999999999998822 2 3689999999876
Q ss_pred CCCC-------CCCeeEEEEccChHH---HHHHHHhccCCCcEEEE
Q psy7830 197 GHAE-------GGPYDVIFFGAGTTE---VSKTILSQLKPNGRIVA 232 (364)
Q Consensus 197 ~~~~-------~~~fD~Ii~~~~~~~---l~~~l~~~LkpGG~Lvi 232 (364)
.... .++||+|+.+..-.. .++.+.++|+|||.+++
T Consensus 143 ~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 143 VLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred HHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEE
Confidence 4321 258999999887543 45677899999999886
No 149
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.00 E-value=3.1e-09 Score=99.79 Aligned_cols=91 Identities=16% Similarity=0.105 Sum_probs=77.5
Q ss_pred ccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830 114 VMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL 191 (364)
Q Consensus 114 ~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~ 191 (364)
++..+.+...+++.+. +.++.+|||+|||+|.++..+++. +|+++|+++.+++.+++++.. .++++++.
T Consensus 11 fl~d~~~~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~-------~~~v~ii~ 81 (258)
T PRK14896 11 FLIDDRVVDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA-------AGNVEIIE 81 (258)
T ss_pred ccCCHHHHHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc-------CCCEEEEE
Confidence 4467788889998876 678999999999999999999988 999999999999999988753 25899999
Q ss_pred cCCCCCCCCCCCeeEEEEccChHH
Q psy7830 192 KDARWGHAEGGPYDVIFFGAGTTE 215 (364)
Q Consensus 192 ~D~~~~~~~~~~fD~Ii~~~~~~~ 215 (364)
+|+..... ..||.|++|.++..
T Consensus 82 ~D~~~~~~--~~~d~Vv~NlPy~i 103 (258)
T PRK14896 82 GDALKVDL--PEFNKVVSNLPYQI 103 (258)
T ss_pred eccccCCc--hhceEEEEcCCccc
Confidence 99987643 35899999988764
No 150
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.99 E-value=5.8e-09 Score=92.61 Aligned_cols=117 Identities=21% Similarity=0.234 Sum_probs=82.7
Q ss_pred CccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----e---------EEEEeCCHHHHHHHHHHHHhcCC
Q psy7830 113 VVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----S---------SVRQLLLPETLNNSLKNIKISRP 179 (364)
Q Consensus 113 ~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~---------V~~vDis~~~l~~a~~~~~~~~~ 179 (364)
....+|.+.+.++.... .+++..|||..||+|.+.+..+.. . ++|+|+++.+++.|++|+....
T Consensus 9 ~a~L~~~lA~~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag- 85 (179)
T PF01170_consen 9 PAPLRPTLAAALLNLAG--WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG- 85 (179)
T ss_dssp STSS-HHHHHHHHHHTT----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-
T ss_pred CCCCCHHHHHHHHHHhC--CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc-
Confidence 34457777777777665 688999999999999999887766 5 7899999999999999998821
Q ss_pred CCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChH--------------HHHHHHHhccCCCcEEEEEEcC
Q psy7830 180 DLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTT--------------EVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 180 ~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~--------------~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
+ ...+.+...|+..+....+.+|.|++|.++. .+.+.+.+.|++ ..+++....
T Consensus 86 --~-~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~ 152 (179)
T PF01170_consen 86 --V-EDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSN 152 (179)
T ss_dssp ----CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESC
T ss_pred --c-CCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECC
Confidence 1 2368999999998875567899999998872 255788888998 444444444
No 151
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.96 E-value=9.8e-09 Score=94.09 Aligned_cols=104 Identities=13% Similarity=-0.002 Sum_probs=78.3
Q ss_pred CCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHh-------cCCCCCCCCCEEEEEcCCCCCCCC---
Q psy7830 133 QNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKI-------SRPDLLQSKTLEFILKDARWGHAE--- 200 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~-------~~~~~l~~~~v~~~~~D~~~~~~~--- 200 (364)
.++.+||+.|||.|.-+..|+.. +|+|+|+|+.+++.+.+.... +........++++.++|+.++...
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~ 121 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN 121 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence 46789999999999999999999 999999999999998663210 000001124799999999987532
Q ss_pred CCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEcC
Q psy7830 201 GGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 201 ~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
.++||.|+-...+.. ..+.+.++|+|||.+++....
T Consensus 122 ~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 122 LPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred cCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 257999976555543 457889999999998876643
No 152
>KOG3420|consensus
Probab=98.96 E-value=1.7e-09 Score=90.65 Aligned_cols=100 Identities=18% Similarity=0.212 Sum_probs=83.1
Q ss_pred ecCCCccChHHHHHHHHHHHhccCC--CCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCC
Q psy7830 109 FANQVVMEPPSYIARCLEQLVDHLQ--NGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQ 183 (364)
Q Consensus 109 ig~g~~~s~P~~~a~~l~~L~~~l~--~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~ 183 (364)
++-.+.+++|++.+.|+..+.+... .|++++|+|||.|-+++..+.. .|.|+|++|++++.+++|++. +.
T Consensus 21 ~~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeE-----fE 95 (185)
T KOG3420|consen 21 LLLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEE-----FE 95 (185)
T ss_pred hhhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHH-----hh
Confidence 3345778899999999998875332 6899999999999999777665 999999999999999999988 22
Q ss_pred CCCEEEEEcCCCCCCCCCCCeeEEEEccChH
Q psy7830 184 SKTLEFILKDARWGHAEGGPYDVIFFGAGTT 214 (364)
Q Consensus 184 ~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~ 214 (364)
-++.++++|+.+..+..+.||.++.|.++.
T Consensus 96 -vqidlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 96 -VQIDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred -hhhheeeeeccchhccCCeEeeEEecCCCC
Confidence 267899999988777678899999998873
No 153
>PRK03612 spermidine synthase; Provisional
Probab=98.95 E-value=2.2e-09 Score=110.33 Aligned_cols=105 Identities=18% Similarity=0.178 Sum_probs=80.7
Q ss_pred CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHH--HHhcCCCCCCCCCEEEEEcCCCCCCC-CCCCee
Q psy7830 133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKN--IKISRPDLLQSKTLEFILKDARWGHA-EGGPYD 205 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~--~~~~~~~~l~~~~v~~~~~D~~~~~~-~~~~fD 205 (364)
++..+|||+|||+|..+..+++. +|+++|+|+++++.++++ +..-....++.++++++.+|+.+... ..++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 45689999999999999888876 899999999999999994 22200011334689999999876432 236899
Q ss_pred EEEEccChH-----------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830 206 VIFFGAGTT-----------EVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 206 ~Ii~~~~~~-----------~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
+|+++...+ .+.+.+.+.|||||++++.....
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~ 418 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSP 418 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCc
Confidence 999986532 25678999999999999876543
No 154
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.94 E-value=4.8e-09 Score=94.39 Aligned_cols=99 Identities=18% Similarity=0.188 Sum_probs=78.2
Q ss_pred CCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC---CCCCCeeEE
Q psy7830 135 GSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH---AEGGPYDVI 207 (364)
Q Consensus 135 g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~---~~~~~fD~I 207 (364)
...+||||||.|.+...+|.. .++|+|+....+..+.+++.. .+.+|+.++++|+.... ..++++|.|
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~-----~~l~Nv~~~~~da~~~l~~~~~~~~v~~i 92 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEK-----RGLKNVRFLRGDARELLRRLFPPGSVDRI 92 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHH-----HTTSSEEEEES-CTTHHHHHSTTTSEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHh-----hcccceEEEEccHHHHHhhcccCCchheE
Confidence 338999999999999999987 999999999999999998888 34579999999987632 235789999
Q ss_pred EEccChHH--------------HHHHHHhccCCCcEEEEEEcCCC
Q psy7830 208 FFGAGTTE--------------VSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 208 i~~~~~~~--------------l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
+.+.+-+| ++..+.+.|+|||.|.+.+....
T Consensus 93 ~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~ 137 (195)
T PF02390_consen 93 YINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEE 137 (195)
T ss_dssp EEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HH
T ss_pred EEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHH
Confidence 99988764 67899999999999998886654
No 155
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.93 E-value=8.2e-09 Score=99.04 Aligned_cols=114 Identities=20% Similarity=0.202 Sum_probs=92.8
Q ss_pred ChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc-
Q psy7830 116 EPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK- 192 (364)
Q Consensus 116 s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~- 192 (364)
..|.+ ++++-.|. .+++|..|||--||||.+.+.+... +++|+|++..|++-|+.|++. .+.....+...
T Consensus 181 ~~P~l-AR~mVNLa-~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~-----y~i~~~~~~~~~ 253 (347)
T COG1041 181 MDPRL-ARAMVNLA-RVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEY-----YGIEDYPVLKVL 253 (347)
T ss_pred cCHHH-HHHHHHHh-ccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhh-----hCcCceeEEEec
Confidence 34665 45554454 3899999999999999999998877 999999999999999999988 33456766666
Q ss_pred CCCCCCCCCCCeeEEEEccChH---------------HHHHHHHhccCCCcEEEEEEcC
Q psy7830 193 DARWGHAEGGPYDVIFFGAGTT---------------EVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 193 D~~~~~~~~~~fD~Ii~~~~~~---------------~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
|+...+..+.++|.|+++.+.- ..++.+.+.||+||++++..+.
T Consensus 254 Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~ 312 (347)
T COG1041 254 DATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR 312 (347)
T ss_pred ccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC
Confidence 9998887666799999887652 3568899999999999998873
No 156
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.92 E-value=3.8e-09 Score=103.88 Aligned_cols=118 Identities=11% Similarity=0.057 Sum_probs=87.8
Q ss_pred ChHHHHHHHHHHHhccCC-CCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830 116 EPPSYIARCLEQLVDHLQ-NGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK 192 (364)
Q Consensus 116 s~P~~~a~~l~~L~~~l~-~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~ 192 (364)
..+.....+++++.+.+. .+.+|||++||+|.+++.+++. +|+++|+++.+++.+++|+..+. ..|++++.+
T Consensus 187 ~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~-----~~~v~~~~~ 261 (362)
T PRK05031 187 PNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANG-----IDNVQIIRM 261 (362)
T ss_pred cCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhC-----CCcEEEEEC
Confidence 344455666666654443 2357999999999999999887 99999999999999999998843 458999999
Q ss_pred CCCCCCCC----------------CCCeeEEEEccChHHHHHHH-HhccCCCcEEEEEEcCCC
Q psy7830 193 DARWGHAE----------------GGPYDVIFFGAGTTEVSKTI-LSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 193 D~~~~~~~----------------~~~fD~Ii~~~~~~~l~~~l-~~~LkpGG~Lvi~~~~~~ 238 (364)
|+...... ..+||+|+++.+-..+.+.+ ..+.++++++++++.+..
T Consensus 262 d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~~~~ivyvSC~p~t 324 (362)
T PRK05031 262 SAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQAYERILYISCNPET 324 (362)
T ss_pred CHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHccCCEEEEEeCHHH
Confidence 98653210 12589999998865544333 233357999999998855
No 157
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.92 E-value=1e-08 Score=91.80 Aligned_cols=100 Identities=13% Similarity=0.066 Sum_probs=76.5
Q ss_pred CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC---CC-CCee
Q psy7830 133 QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA---EG-GPYD 205 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~---~~-~~fD 205 (364)
-.|.+|||++||+|.+++.++.+ +|+++|.++.+++.+++|++.+. + ..+++++.+|+..... .. ..||
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~---~-~~~~~~~~~D~~~~l~~~~~~~~~~d 123 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLK---S-GEQAEVVRNSALRALKFLAKKPTFDN 123 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhC---C-cccEEEEehhHHHHHHHhhccCCCce
Confidence 36889999999999999999887 89999999999999999998833 2 1378999999854321 11 2489
Q ss_pred EEEEccChH-----HHHHHHH--hccCCCcEEEEEEcC
Q psy7830 206 VIFFGAGTT-----EVSKTIL--SQLKPNGRIVAPVGN 236 (364)
Q Consensus 206 ~Ii~~~~~~-----~l~~~l~--~~LkpGG~Lvi~~~~ 236 (364)
+|+.+.++. .+++.+. ..|+++|.+|+....
T Consensus 124 vv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 124 VIYLDPPFFNGALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred EEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 999988773 2344333 368899998886644
No 158
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.91 E-value=4.3e-09 Score=103.17 Aligned_cols=118 Identities=12% Similarity=0.038 Sum_probs=86.2
Q ss_pred ChHHHHHHHHHHHhccCC-CCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830 116 EPPSYIARCLEQLVDHLQ-NGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK 192 (364)
Q Consensus 116 s~P~~~a~~l~~L~~~l~-~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~ 192 (364)
..+.....+++.+.+.+. .+.+|||+|||+|.+++.+++. +|+++|+++.+++.|++|+..+. ..|++++.+
T Consensus 178 ~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~-----~~~v~~~~~ 252 (353)
T TIGR02143 178 PNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANN-----IDNVQIIRM 252 (353)
T ss_pred CCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEEc
Confidence 334445555655544333 2357999999999999999987 99999999999999999998843 458999999
Q ss_pred CCCCCCCC----------C------CCeeEEEEccChHHHHHHH-HhccCCCcEEEEEEcCCC
Q psy7830 193 DARWGHAE----------G------GPYDVIFFGAGTTEVSKTI-LSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 193 D~~~~~~~----------~------~~fD~Ii~~~~~~~l~~~l-~~~LkpGG~Lvi~~~~~~ 238 (364)
|+.+.... . ..||+|+.+.+-..+.+.+ ..+.+|++++++++.+..
T Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~~~~ivYvsC~p~t 315 (353)
T TIGR02143 253 SAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQAYERILYISCNPET 315 (353)
T ss_pred CHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHcCCcEEEEEcCHHH
Confidence 98653321 0 1389999998854433322 333458999999998865
No 159
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.91 E-value=5e-10 Score=100.68 Aligned_cols=110 Identities=16% Similarity=0.154 Sum_probs=81.6
Q ss_pred ChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC
Q psy7830 116 EPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD 193 (364)
Q Consensus 116 s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D 193 (364)
+-|.+++.++..+. ..+-.++||+|||||..+..+..+ +++|+|+|+.|++.|.++--- + ...++|
T Consensus 109 ~vP~~l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~Y--------D--~L~~Ae 176 (287)
T COG4976 109 SVPELLAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLY--------D--TLYVAE 176 (287)
T ss_pred ccHHHHHHHHHhcc--CCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccch--------H--HHHHHH
Confidence 44667788877765 345679999999999999998888 999999999999998874210 1 122333
Q ss_pred CCCCC--CCCCCeeEEEEccChH------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830 194 ARWGH--AEGGPYDVIFFGAGTT------EVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 194 ~~~~~--~~~~~fD~Ii~~~~~~------~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
+..+. ..+.+||+|.+..++. .++......|+|||.+.||+.+-
T Consensus 177 a~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l 228 (287)
T COG4976 177 AVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETL 228 (287)
T ss_pred HHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEeccc
Confidence 32222 2346899998766554 46778899999999999999664
No 160
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.89 E-value=9e-09 Score=101.27 Aligned_cols=107 Identities=21% Similarity=0.246 Sum_probs=89.0
Q ss_pred HhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC----C
Q psy7830 128 LVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA----E 200 (364)
Q Consensus 128 L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~----~ 200 (364)
+.+..+ |++|||+.|=||.++.+++.. +|++||+|..+++.|++|++-|. +....+.++++|+..... .
T Consensus 212 l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg---~~~~~~~~i~~Dvf~~l~~~~~~ 287 (393)
T COG1092 212 LGELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNG---LDGDRHRFIVGDVFKWLRKAERR 287 (393)
T ss_pred Hhhhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcC---CCccceeeehhhHHHHHHHHHhc
Confidence 333345 999999999999999999887 99999999999999999999866 656679999999986542 2
Q ss_pred CCCeeEEEEccCh---------------HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830 201 GGPYDVIFFGAGT---------------TEVSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 201 ~~~fD~Ii~~~~~---------------~~l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
..+||+|+.+.+. ..+...+.++|+|||.++++.....
T Consensus 288 g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 288 GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 3589999998764 1266789999999999999987765
No 161
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.85 E-value=2e-08 Score=91.93 Aligned_cols=115 Identities=23% Similarity=0.294 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHh--cCCC-----CCCCCCE
Q psy7830 117 PPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKI--SRPD-----LLQSKTL 187 (364)
Q Consensus 117 ~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~--~~~~-----~l~~~~v 187 (364)
+|.+... ++.+. .+++.+||..|||.|+-...|+.. +|+|+|+|+.+++.+.+.... .... .....+|
T Consensus 23 ~p~L~~~-~~~l~--~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i 99 (218)
T PF05724_consen 23 NPALVEY-LDSLA--LKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRI 99 (218)
T ss_dssp THHHHHH-HHHHT--TSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSE
T ss_pred CHHHHHH-HHhcC--CCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCce
Confidence 4445433 33344 577889999999999999999999 999999999999998543221 1100 0123478
Q ss_pred EEEEcCCCCCCCCC-CCeeEEEEccChH--------HHHHHHHhccCCCcEEEEEE
Q psy7830 188 EFILKDARWGHAEG-GPYDVIFFGAGTT--------EVSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 188 ~~~~~D~~~~~~~~-~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~~ 234 (364)
+++++|...+.... ++||+|+=...+. ...+.+.++|+|||.+++.+
T Consensus 100 ~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~ 155 (218)
T PF05724_consen 100 TIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLIT 155 (218)
T ss_dssp EEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEE
T ss_pred EEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 99999998876543 5899998655443 35678999999999944433
No 162
>KOG2899|consensus
Probab=98.85 E-value=1.1e-08 Score=92.94 Aligned_cols=101 Identities=18% Similarity=0.196 Sum_probs=71.2
Q ss_pred CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCC--CCCC----------------------
Q psy7830 132 LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRP--DLLQ---------------------- 183 (364)
Q Consensus 132 l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~--~~l~---------------------- 183 (364)
.-.+..+|||||-+|.+++.+++. .|.|+|||+..++.|+++++.-.. ..+.
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 346778999999999999999988 999999999999999998864110 0000
Q ss_pred -------------CCCEEEEEcCCCCCCCCCCCeeEEEEccCh------------HHHHHHHHhccCCCcEEEEEE
Q psy7830 184 -------------SKTLEFILKDARWGHAEGGPYDVIFFGAGT------------TEVSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 184 -------------~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~------------~~l~~~l~~~LkpGG~Lvi~~ 234 (364)
..|..+...|.. ......||+|+|-... ..++..+.++|.|||+||+.-
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred cccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 012222222332 2234679999874433 236789999999999999743
No 163
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.84 E-value=2e-08 Score=95.92 Aligned_cols=215 Identities=15% Similarity=0.133 Sum_probs=133.6
Q ss_pred ccccCCCceecCCCccChHHHHHHHHHHHh----ccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHH
Q psy7830 100 FGFCDIPYAFANQVVMEPPSYIARCLEQLV----DHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSL 171 (364)
Q Consensus 100 ~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~----~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~ 171 (364)
..|.|+++.|.+-- -.+.-|.|. +.++.-.+||-+|.|.|.....+.+. +|+-+|+||.|++.++
T Consensus 258 rLYldG~LQfsTrD-------e~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~ 330 (508)
T COG4262 258 RLYLDGGLQFSTRD-------EYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELAS 330 (508)
T ss_pred EEEEcCceeeeech-------hhhhhheeeecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhh
Confidence 66888888876421 011111111 11345578999999999999999988 9999999999999999
Q ss_pred HH--HHhcCCCCCCCCCEEEEEcCCCCCCCC-CCCeeEEEEccChH-----------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830 172 KN--IKISRPDLLQSKTLEFILKDARWGHAE-GGPYDVIFFGAGTT-----------EVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 172 ~~--~~~~~~~~l~~~~v~~~~~D~~~~~~~-~~~fD~Ii~~~~~~-----------~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
++ +..-++++...++++++..|+..+... .+.||.||++..-+ .+-..+.+.|+++|.+|+..++.
T Consensus 331 ~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 331 HATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred hhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 54 333223446678999999999876543 35899999875543 23467889999999999999887
Q ss_pred C--cceEEEEEecCCCceeEEEeeceeEEeccCcccccCCCCCCCccCCCccccceecCCCCCCCCCccccCCCCcccCC
Q psy7830 238 W--RQNLSVIDKGPDGSISSKILRRVSSDFLCNLEYQLHPDVFPQPLNTSAEDTYTKMFPPPPGVRPRAVTFPLSSQERS 315 (364)
Q Consensus 238 ~--~~~l~~~~~~~~g~~~~~~l~~~~f~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (364)
. ...+|++.++-... ..+..--.-++|-.+ .|+.++..+..- .+-++.+.++....++.....+.
T Consensus 411 y~tp~vfw~i~aTik~A-G~~~~Pyhv~VPTFG--------eWGf~l~~~~~~----~fep~~e~~~~t~FLd~e~~~a~ 477 (508)
T COG4262 411 YFTPRVFWRIDATIKSA-GYRVWPYHVHVPTFG--------EWGFILAAPGDA----DFEPPTEYRPPTRFLDAEVLHAA 477 (508)
T ss_pred ccCCceeeeehhHHHhC-cceeeeeEEecCccc--------ccceeecccccC----CCCCCcccCcccchhhHHHHHHH
Confidence 6 45566666542210 011111111222221 467776655532 22224555666666654333334
Q ss_pred CCCCCccccCCCChhhhhc
Q psy7830 316 PGNGSTKKYEFLPESTEDR 334 (364)
Q Consensus 316 ~~~~~~~~~~~l~~~~~~~ 334 (364)
-.++.+..-+.+++++.++
T Consensus 478 ~~fg~d~prp~vepntL~~ 496 (508)
T COG4262 478 FVFGPDMPRPQVEPNTLDN 496 (508)
T ss_pred HhcCCCCCCCCCCccccCC
Confidence 4444443333677777765
No 164
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=1.7e-08 Score=101.07 Aligned_cols=117 Identities=22% Similarity=0.261 Sum_probs=91.0
Q ss_pred ChHHHHHHHHHHHhccC--CCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830 116 EPPSYIARCLEQLVDHL--QNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL 191 (364)
Q Consensus 116 s~P~~~a~~l~~L~~~l--~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~ 191 (364)
..+.....++++..+.+ .++++|||+-||.|.+++.+|+. +|+|+|+++.+++.|++|++.|. ..|++|..
T Consensus 273 ~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~-----i~N~~f~~ 347 (432)
T COG2265 273 VNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANG-----IDNVEFIA 347 (432)
T ss_pred cCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcC-----CCcEEEEe
Confidence 44445555555444433 47789999999999999999977 99999999999999999999944 56899999
Q ss_pred cCCCCCCCC---CCCeeEEEEccChHH----HHHHHHhccCCCcEEEEEEcCCC
Q psy7830 192 KDARWGHAE---GGPYDVIFFGAGTTE----VSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 192 ~D~~~~~~~---~~~fD~Ii~~~~~~~----l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
+|+++.... ...+|.|+++.+-.. +++.+ ..++|..++++|+.+..
T Consensus 348 ~~ae~~~~~~~~~~~~d~VvvDPPR~G~~~~~lk~l-~~~~p~~IvYVSCNP~T 400 (432)
T COG2265 348 GDAEEFTPAWWEGYKPDVVVVDPPRAGADREVLKQL-AKLKPKRIVYVSCNPAT 400 (432)
T ss_pred CCHHHHhhhccccCCCCEEEECCCCCCCCHHHHHHH-HhcCCCcEEEEeCCHHH
Confidence 998876543 247899999977544 33333 45688999999998865
No 165
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.81 E-value=2.4e-08 Score=96.82 Aligned_cols=105 Identities=21% Similarity=0.182 Sum_probs=74.7
Q ss_pred CCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHh-cCC-CCCC---CCCEEEEEcCCCCC------CC
Q psy7830 134 NGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKI-SRP-DLLQ---SKTLEFILKDARWG------HA 199 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~-~~~-~~l~---~~~v~~~~~D~~~~------~~ 199 (364)
++.+|||+|||-|+-...+... .++|+|++...++.|+++... ... +... .-...++.+|.... ..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 7899999999999877766666 999999999999999999843 110 0000 12467788887632 12
Q ss_pred CCCCeeEEEEccChHH----------HHHHHHhccCCCcEEEEEEcCCC
Q psy7830 200 EGGPYDVIFFGAGTTE----------VSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 200 ~~~~fD~Ii~~~~~~~----------l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
...+||+|-+..++|. ++.++.+.|+|||+++.++.+..
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 2258999988887764 67899999999999999998865
No 166
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.80 E-value=1.4e-08 Score=90.35 Aligned_cols=121 Identities=20% Similarity=0.174 Sum_probs=85.4
Q ss_pred CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCC-CE
Q psy7830 112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSK-TL 187 (364)
Q Consensus 112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~-~v 187 (364)
+..++.-.+-..+..+|....-.|.+|||+.||||.+++.++.+ +|+.||.++.++...++|++. ++.. ++
T Consensus 20 ~~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~-----l~~~~~~ 94 (183)
T PF03602_consen 20 NTRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEK-----LGLEDKI 94 (183)
T ss_dssp TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHH-----HT-GGGE
T ss_pred CcCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHH-----hCCCcce
Confidence 34454445556667777632147999999999999999988777 999999999999999999998 3333 58
Q ss_pred EEEEcCCCCCCC----CCCCeeEEEEccChH------HHHHHHH--hccCCCcEEEEEEcCC
Q psy7830 188 EFILKDARWGHA----EGGPYDVIFFGAGTT------EVSKTIL--SQLKPNGRIVAPVGNV 237 (364)
Q Consensus 188 ~~~~~D~~~~~~----~~~~fD~Ii~~~~~~------~l~~~l~--~~LkpGG~Lvi~~~~~ 237 (364)
+++..|...... ...+||+|+++.++. .++..+. .+|+++|.+++.....
T Consensus 95 ~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 95 RVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp EEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred eeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 999999654321 246899999998874 2445555 6889999999988554
No 167
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.79 E-value=3.7e-08 Score=84.71 Aligned_cols=122 Identities=17% Similarity=0.180 Sum_probs=94.7
Q ss_pred ccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHh
Q psy7830 102 FCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKI 176 (364)
Q Consensus 102 y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~ 176 (364)
+.+.+..+|. ..+|++.+..+|+..+. ...|.-|||+|.|+|.+|.++..+ .++++|.|++.+....+..
T Consensus 19 wi~~PrtVGa-I~PsSs~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-- 93 (194)
T COG3963 19 WIDNPRTVGA-ILPSSSILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-- 93 (194)
T ss_pred HhcCCceeee-ecCCcHHHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC--
Confidence 3455556662 45677778888888887 678889999999999999988877 8999999999999888764
Q ss_pred cCCCCCCCCCEEEEEcCCCCCC-----CCCCCeeEEEEccChH--------HHHHHHHhccCCCcEEEEEEcC
Q psy7830 177 SRPDLLQSKTLEFILKDARWGH-----AEGGPYDVIFFGAGTT--------EVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 177 ~~~~~l~~~~v~~~~~D~~~~~-----~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
+.+.++.+|+.++. ..+..||.|++..++- .+++.+...|.+||.++.-.-.
T Consensus 94 --------p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 94 --------PGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred --------CCccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 45668888887543 2235699999876652 3678999999999988865433
No 168
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.79 E-value=3.7e-08 Score=97.41 Aligned_cols=112 Identities=15% Similarity=0.100 Sum_probs=84.9
Q ss_pred HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC
Q psy7830 120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR 195 (364)
Q Consensus 120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~ 195 (364)
+...+++.+.. ..++.+|||++||+|..++.++.. +|+++|+++.+++.+++|++.|. ..++++..+|+.
T Consensus 44 l~~~v~~~~~~-~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~-----~~~~~v~~~Da~ 117 (382)
T PRK04338 44 ISVLVLRAFGP-KLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG-----LENEKVFNKDAN 117 (382)
T ss_pred HHHHHHHHHHh-hcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-----CCceEEEhhhHH
Confidence 44555555541 113578999999999999998764 79999999999999999998854 357789999986
Q ss_pred CCCCCCCCeeEEEEccCh--HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830 196 WGHAEGGPYDVIFFGAGT--TEVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 196 ~~~~~~~~fD~Ii~~~~~--~~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
........||+|+++..- ..++....+.+++||.++++..+.
T Consensus 118 ~~l~~~~~fD~V~lDP~Gs~~~~l~~al~~~~~~gilyvSAtD~ 161 (382)
T PRK04338 118 ALLHEERKFDVVDIDPFGSPAPFLDSAIRSVKRGGLLCVTATDT 161 (382)
T ss_pred HHHhhcCCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEEecCc
Confidence 644323579999998642 245566677889999999996553
No 169
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.79 E-value=3.4e-08 Score=90.67 Aligned_cols=98 Identities=24% Similarity=0.205 Sum_probs=84.3
Q ss_pred CEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC---CCCCCCeeEEE
Q psy7830 136 SRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG---HAEGGPYDVIF 208 (364)
Q Consensus 136 ~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~---~~~~~~fD~Ii 208 (364)
-.+||||||.|.+...+|+. .++|||+....+..+.+.+.+ .+.+|+.+++.|+... ..++++.|.|+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~-----~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~ 124 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKE-----LGLKNLRLLCGDAVEVLDYLIPDGSLDKIY 124 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHH-----cCCCcEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence 47999999999999999998 899999999999999999888 4456999999998753 33456999999
Q ss_pred EccChHH--------------HHHHHHhccCCCcEEEEEEcCCC
Q psy7830 209 FGAGTTE--------------VSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 209 ~~~~~~~--------------l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
.+.+-+| +++.+.+.|+|||.|.+.+....
T Consensus 125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~ 168 (227)
T COG0220 125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEE 168 (227)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHH
Confidence 9988754 67899999999999999887754
No 170
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.78 E-value=2.5e-08 Score=89.87 Aligned_cols=97 Identities=25% Similarity=0.293 Sum_probs=72.8
Q ss_pred ccCCCCCEEEEECCCccHHHHHHHc--c--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCee
Q psy7830 130 DHLQNGSRVLDIGSGQGYMATAKEW--L--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYD 205 (364)
Q Consensus 130 ~~l~~g~~VLDiGcGsG~~a~~la~--~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD 205 (364)
+.+++|..|+|+.||-|++++.+++ . .|+++|++|.+++..++|++.|. +. .++..+.+|+..... ...||
T Consensus 97 ~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNk---v~-~~i~~~~~D~~~~~~-~~~~d 171 (200)
T PF02475_consen 97 NLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNK---VE-NRIEVINGDAREFLP-EGKFD 171 (200)
T ss_dssp TC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT----T-TTEEEEES-GGG----TT-EE
T ss_pred hcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcC---CC-CeEEEEcCCHHHhcC-ccccC
Confidence 3468999999999999999999998 3 89999999999999999999865 43 479999999988766 57899
Q ss_pred EEEEccCh--HHHHHHHHhccCCCcEEE
Q psy7830 206 VIFFGAGT--TEVSKTILSQLKPNGRIV 231 (364)
Q Consensus 206 ~Ii~~~~~--~~l~~~l~~~LkpGG~Lv 231 (364)
.|+++.+. ..++..+.+++++||.+-
T Consensus 172 rvim~lp~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 172 RVIMNLPESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEEE--TSSGGGGHHHHHHHEEEEEEEE
T ss_pred EEEECChHHHHHHHHHHHHHhcCCcEEE
Confidence 99998774 357788999999999874
No 171
>KOG1122|consensus
Probab=98.77 E-value=2.7e-08 Score=96.73 Aligned_cols=100 Identities=19% Similarity=0.163 Sum_probs=84.7
Q ss_pred CCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC--CCCe
Q psy7830 132 LQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE--GGPY 204 (364)
Q Consensus 132 l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~--~~~f 204 (364)
+++|.||||+++.+|..|.++|.+ .|++.|.+...+...+.|+.+ +|..|..+...|...++.. .++|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~r-----lGv~ntiv~n~D~~ef~~~~~~~~f 313 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHR-----LGVTNTIVSNYDGREFPEKEFPGSF 313 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHH-----hCCCceEEEccCcccccccccCccc
Confidence 689999999999999999998887 899999999999999999999 6667888888898765421 2379
Q ss_pred eEEEEccChHH----------------------------HHHHHHhccCCCcEEEEEEcC
Q psy7830 205 DVIFFGAGTTE----------------------------VSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 205 D~Ii~~~~~~~----------------------------l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
|.|+.+++|.. ++.....++++||+||.++-+
T Consensus 314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred ceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 99999888743 445777899999999998855
No 172
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.77 E-value=2.9e-08 Score=94.09 Aligned_cols=103 Identities=21% Similarity=0.229 Sum_probs=79.0
Q ss_pred CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC---CCCCeeE
Q psy7830 133 QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA---EGGPYDV 206 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~---~~~~fD~ 206 (364)
..|.+|||+.|=||.++.+++.. +|++||.|..+++.+++|+..|. +...+++++..|+..... ..++||+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg---~~~~~~~~~~~Dvf~~l~~~~~~~~fD~ 198 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNG---LDLDRHRFIQGDVFKFLKRLKKGGRFDL 198 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT----CCTCEEEEES-HHHHHHHHHHTT-EEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCccceEEEecCHHHHHHHHhcCCCCCE
Confidence 45899999999999999987766 89999999999999999999866 555689999999876432 2468999
Q ss_pred EEEccCh------------HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830 207 IFFGAGT------------TEVSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 207 Ii~~~~~------------~~l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
|+++.+. ..+...+.++|+|||.|++......
T Consensus 199 IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~ 242 (286)
T PF10672_consen 199 IILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHH 242 (286)
T ss_dssp EEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TT
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 9998764 2477888999999999998887654
No 173
>KOG1975|consensus
Probab=98.76 E-value=3.9e-08 Score=92.68 Aligned_cols=106 Identities=18% Similarity=0.187 Sum_probs=82.1
Q ss_pred CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHh--cCCCCCCCCCEEEEEcCCCCC------CCC
Q psy7830 132 LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKI--SRPDLLQSKTLEFILKDARWG------HAE 200 (364)
Q Consensus 132 l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~--~~~~~l~~~~v~~~~~D~~~~------~~~ 200 (364)
.++++.++|+|||-|+-.+.+-+. .++|+||.+..++.|+++.+. +..... .-.+.|+.+|.... .+.
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~-~f~a~f~~~Dc~~~~l~d~~e~~ 193 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKF-IFTAVFIAADCFKERLMDLLEFK 193 (389)
T ss_pred hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcc-cceeEEEEeccchhHHHHhccCC
Confidence 478999999999999988877766 999999999999999998876 210000 11478999998632 223
Q ss_pred CCCeeEEEEccChHH----------HHHHHHhccCCCcEEEEEEcCCC
Q psy7830 201 GGPYDVIFFGAGTTE----------VSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 201 ~~~fD~Ii~~~~~~~----------l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
+.+||+|-+...+|. ++.++.+.|||||+++-++++..
T Consensus 194 dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 194 DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 344999977666643 67899999999999999998875
No 174
>PLN02823 spermine synthase
Probab=98.73 E-value=9.3e-08 Score=92.83 Aligned_cols=102 Identities=25% Similarity=0.330 Sum_probs=79.7
Q ss_pred CCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC-CCCeeEEE
Q psy7830 134 NGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE-GGPYDVIF 208 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~-~~~fD~Ii 208 (364)
...+||.+|+|.|..+..+++. +|+.||+|+.+++.+++.+..+. ..+..++++++.+|+...... .++||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~-~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNR-EAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccc-ccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 4579999999999999888775 89999999999999999876421 013357999999999875432 36899999
Q ss_pred EccCh------------HHHHH-HHHhccCCCcEEEEEEcC
Q psy7830 209 FGAGT------------TEVSK-TILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 209 ~~~~~------------~~l~~-~l~~~LkpGG~Lvi~~~~ 236 (364)
++..- ..+.+ .+.+.|+|||++++....
T Consensus 182 ~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s 222 (336)
T PLN02823 182 GDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGP 222 (336)
T ss_pred ecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccC
Confidence 87421 13455 788999999999987654
No 175
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=1.3e-07 Score=88.04 Aligned_cols=102 Identities=15% Similarity=0.032 Sum_probs=81.2
Q ss_pred cChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830 115 MEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK 192 (364)
Q Consensus 115 ~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~ 192 (364)
+..+.+..++++.+. +.+++.|||||+|.|.+|..+++. +|+++|+|+.++...++.... .+|++++.+
T Consensus 13 L~d~~v~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~-------~~n~~vi~~ 83 (259)
T COG0030 13 LIDKNVIDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAP-------YDNLTVING 83 (259)
T ss_pred ccCHHHHHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhccc-------ccceEEEeC
Confidence 345667788888877 677999999999999999999998 999999999999999988753 358999999
Q ss_pred CCCCCCCCCC-CeeEEEEccChHHHHHHHHhccC
Q psy7830 193 DARWGHAEGG-PYDVIFFGAGTTEVSKTILSQLK 225 (364)
Q Consensus 193 D~~~~~~~~~-~fD~Ii~~~~~~~l~~~l~~~Lk 225 (364)
|+.......- .++.|++|.++.--.+-+.++|+
T Consensus 84 DaLk~d~~~l~~~~~vVaNlPY~Isspii~kll~ 117 (259)
T COG0030 84 DALKFDFPSLAQPYKVVANLPYNISSPILFKLLE 117 (259)
T ss_pred chhcCcchhhcCCCEEEEcCCCcccHHHHHHHHh
Confidence 9987765421 68999999998643333333333
No 176
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.69 E-value=8.5e-08 Score=92.38 Aligned_cols=77 Identities=21% Similarity=0.230 Sum_probs=58.2
Q ss_pred CCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhc-CCCCCCCCCEEEEE-cCCCCCC----CCCCC
Q psy7830 134 NGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKIS-RPDLLQSKTLEFIL-KDARWGH----AEGGP 203 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~-~~~~l~~~~v~~~~-~D~~~~~----~~~~~ 203 (364)
.+.++||||||+|.+...++.. +++|+|+|+.+++.|++|++.| . +. .+|++.. .|..... ...+.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~---l~-~~I~~~~~~~~~~i~~~i~~~~~~ 189 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPG---LN-GAIRLRLQKDSKAIFKGIIHKNER 189 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccC---Cc-CcEEEEEccchhhhhhcccccCCc
Confidence 4679999999999887776654 9999999999999999999985 3 22 3677754 3322211 12468
Q ss_pred eeEEEEccChH
Q psy7830 204 YDVIFFGAGTT 214 (364)
Q Consensus 204 fD~Ii~~~~~~ 214 (364)
||+|+||.++.
T Consensus 190 fDlivcNPPf~ 200 (321)
T PRK11727 190 FDATLCNPPFH 200 (321)
T ss_pred eEEEEeCCCCc
Confidence 99999999885
No 177
>KOG3010|consensus
Probab=98.68 E-value=3.3e-08 Score=89.83 Aligned_cols=98 Identities=14% Similarity=0.100 Sum_probs=68.7
Q ss_pred CCCC-EEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830 133 QNGS-RVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF 209 (364)
Q Consensus 133 ~~g~-~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~ 209 (364)
.++. .++|+|||+|..++.++.. +|+|+|+++.|++.|++...... .. ........++..+...+++.|+|++
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y---~~-t~~~ms~~~~v~L~g~e~SVDlI~~ 106 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTY---CH-TPSTMSSDEMVDLLGGEESVDLITA 106 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCccc---cc-CCccccccccccccCCCcceeeehh
Confidence 3444 7899999999777888887 99999999999999887543211 00 1222333333344333578999999
Q ss_pred ccChHH-----HHHHHHhccCCCcEEEEEE
Q psy7830 210 GAGTTE-----VSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 210 ~~~~~~-----l~~~l~~~LkpGG~Lvi~~ 234 (364)
...+|+ +.+.+.++||+.|-++...
T Consensus 107 Aqa~HWFdle~fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 107 AQAVHWFDLERFYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred hhhHHhhchHHHHHHHHHHcCCCCCEEEEE
Confidence 988886 4678999999877444434
No 178
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.68 E-value=2.1e-08 Score=90.62 Aligned_cols=104 Identities=26% Similarity=0.267 Sum_probs=83.9
Q ss_pred CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC--CCCCCeeE
Q psy7830 132 LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH--AEGGPYDV 206 (364)
Q Consensus 132 l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~--~~~~~fD~ 206 (364)
++.|.+|||.|.|-||.++..+++ +|+.+|.||..++.|.-|--... +...+++++.+|+.+.. +.+++||+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~---l~~~~i~iilGD~~e~V~~~~D~sfDa 208 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRE---LFEIAIKIILGDAYEVVKDFDDESFDA 208 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCcc---ccccccEEecccHHHHHhcCCccccce
Confidence 456999999999999999999888 99999999999999987643311 22347899999987653 34678999
Q ss_pred EEEccCh---------HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830 207 IFFGAGT---------TEVSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 207 Ii~~~~~---------~~l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
|+-+.+- ..+-+++++.|||||+|+--+++++
T Consensus 209 IiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg 249 (287)
T COG2521 209 IIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPG 249 (287)
T ss_pred EeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC
Confidence 9866542 2356899999999999999998876
No 179
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.66 E-value=1e-07 Score=91.67 Aligned_cols=121 Identities=21% Similarity=0.201 Sum_probs=82.1
Q ss_pred CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHc---------c--eEEEEeCCHHHHHHHHHHHHhcCCC
Q psy7830 112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEW---------L--SSVRQLLLPETLNNSLKNIKISRPD 180 (364)
Q Consensus 112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~---------~--~V~~vDis~~~l~~a~~~~~~~~~~ 180 (364)
|+..+...++..|.+++. ..++.+|+|.+||+|.+...+.+ . .++|+|+++.++..|+-|+.-..
T Consensus 26 G~~~TP~~i~~l~~~~~~--~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~-- 101 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLLN--PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG-- 101 (311)
T ss_dssp GGC---HHHHHHHHHHHT--T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT--
T ss_pred ceeehHHHHHHHHHhhhh--ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc--
Confidence 445555567777777775 67888999999999999877765 2 89999999999999998875421
Q ss_pred CCCCCCEEEEEcCCCCCCCC--CCCeeEEEEccChHH---------------------------HHHHHHhccCCCcEEE
Q psy7830 181 LLQSKTLEFILKDARWGHAE--GGPYDVIFFGAGTTE---------------------------VSKTILSQLKPNGRIV 231 (364)
Q Consensus 181 ~l~~~~v~~~~~D~~~~~~~--~~~fD~Ii~~~~~~~---------------------------l~~~l~~~LkpGG~Lv 231 (364)
.+..+..+..+|....... ...||+|++|.++.. .+..+.+.|++||+++
T Consensus 102 -~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~ 180 (311)
T PF02384_consen 102 -IDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAA 180 (311)
T ss_dssp -HHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEE
T ss_pred -cccccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccccccee
Confidence 2223456888887654332 368999999876521 4467889999999988
Q ss_pred EEEcCC
Q psy7830 232 APVGNV 237 (364)
Q Consensus 232 i~~~~~ 237 (364)
+.++..
T Consensus 181 ~Ilp~~ 186 (311)
T PF02384_consen 181 IILPNG 186 (311)
T ss_dssp EEEEHH
T ss_pred EEecch
Confidence 877653
No 180
>KOG1499|consensus
Probab=98.66 E-value=8.9e-08 Score=91.59 Aligned_cols=97 Identities=18% Similarity=0.055 Sum_probs=73.1
Q ss_pred CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830 132 LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF 208 (364)
Q Consensus 132 l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii 208 (364)
+-.+..|||+|||+|.++...|+. +|+++|.|.-+ +.|++.+..|. +. ..|+++.+.+++...+.++.|+|+
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~---~~-~ii~vi~gkvEdi~LP~eKVDiIv 132 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNG---LE-DVITVIKGKVEDIELPVEKVDIIV 132 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcC---cc-ceEEEeecceEEEecCccceeEEe
Confidence 356889999999999999999888 99999998655 89998888754 32 358999998877644357899998
Q ss_pred EccChHH-----HHH----HHHhccCCCcEEEEE
Q psy7830 209 FGAGTTE-----VSK----TILSQLKPNGRIVAP 233 (364)
Q Consensus 209 ~~~~~~~-----l~~----~l~~~LkpGG~Lvi~ 233 (364)
+--.-.. ++. .=-+.|+|||.++=.
T Consensus 133 SEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 133 SEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred ehhhhHHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence 7433222 222 223689999988743
No 181
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.66 E-value=5.2e-07 Score=79.84 Aligned_cols=131 Identities=17% Similarity=0.130 Sum_probs=93.1
Q ss_pred ccCCCceecC--CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHh
Q psy7830 102 FCDIPYAFAN--QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKI 176 (364)
Q Consensus 102 y~d~~l~ig~--g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~ 176 (364)
|....+.+.. +..++.-.+-..+..+|.+.--.|.++||+-+|||.+++.++.+ +++.||.|..++...++|++.
T Consensus 9 ~kgr~L~~p~~~~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~ 88 (187)
T COG0742 9 YKGRKLKTPDGPGTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKA 88 (187)
T ss_pred ccCCcccCCCCCCcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHH
Confidence 4444555544 34453333444455555421145889999999999999998887 999999999999999999988
Q ss_pred cCCCCCC-CCCEEEEEcCCCCCCC---CCCCeeEEEEccChHH-HH----HH----HHhccCCCcEEEEEEcCC
Q psy7830 177 SRPDLLQ-SKTLEFILKDARWGHA---EGGPYDVIFFGAGTTE-VS----KT----ILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 177 ~~~~~l~-~~~v~~~~~D~~~~~~---~~~~fD~Ii~~~~~~~-l~----~~----l~~~LkpGG~Lvi~~~~~ 237 (364)
++ ..+.+++..|+..... ..++||+|+.+.++.. +. .. -...|+|+|.+++.....
T Consensus 89 -----l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 89 -----LGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred -----hCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 33 3478889999874321 1235999999999873 21 11 236799999999987654
No 182
>KOG0820|consensus
Probab=98.64 E-value=1.6e-07 Score=86.67 Aligned_cols=98 Identities=16% Similarity=0.120 Sum_probs=80.9
Q ss_pred cCCCcc-ChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC
Q psy7830 110 ANQVVM-EPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKT 186 (364)
Q Consensus 110 g~g~~~-s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~ 186 (364)
+.|+|+ -.|.+...+++... +++++.|||+|.|||.+|..+.+. +|+++|+||.|+....++.+.-. ....
T Consensus 35 d~GQHilkNp~v~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp----~~~k 108 (315)
T KOG0820|consen 35 DFGQHILKNPLVIDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTP----KSGK 108 (315)
T ss_pred ccchhhhcCHHHHHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCC----ccce
Confidence 446776 56788888888777 899999999999999999999988 99999999999999999886511 1247
Q ss_pred EEEEEcCCCCCCCCCCCeeEEEEccChHH
Q psy7830 187 LEFILKDARWGHAEGGPYDVIFFGAGTTE 215 (364)
Q Consensus 187 v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~ 215 (364)
++++.+|...... ..||.+++|.+++-
T Consensus 109 LqV~~gD~lK~d~--P~fd~cVsNlPyqI 135 (315)
T KOG0820|consen 109 LQVLHGDFLKTDL--PRFDGCVSNLPYQI 135 (315)
T ss_pred eeEEecccccCCC--cccceeeccCCccc
Confidence 9999999876542 46999999988753
No 183
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.62 E-value=2.1e-07 Score=93.72 Aligned_cols=92 Identities=20% Similarity=0.199 Sum_probs=67.7
Q ss_pred CCEEEEECCCccHHHHHHHcc--------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeE
Q psy7830 135 GSRVLDIGSGQGYMATAKEWL--------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDV 206 (364)
Q Consensus 135 g~~VLDiGcGsG~~a~~la~~--------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~ 206 (364)
+..|+|+|||+|.++...++. +|++||.++.++...++.+..+. . .++|+++.+|+++...+ .++|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~---w-~~~V~vi~~d~r~v~lp-ekvDI 261 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG---W-GDKVTVIHGDMREVELP-EKVDI 261 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT---T-TTTEEEEES-TTTSCHS-S-EEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC---C-CCeEEEEeCcccCCCCC-CceeE
Confidence 467999999999998555432 99999999999988877755532 2 25899999999987653 58999
Q ss_pred EEEc--------cChHHHHHHHHhccCCCcEEE
Q psy7830 207 IFFG--------AGTTEVSKTILSQLKPNGRIV 231 (364)
Q Consensus 207 Ii~~--------~~~~~l~~~l~~~LkpGG~Lv 231 (364)
|++- -....++....+.|||||+++
T Consensus 262 IVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 262 IVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 9873 233456777788999999876
No 184
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.62 E-value=3.2e-07 Score=80.98 Aligned_cols=102 Identities=25% Similarity=0.287 Sum_probs=67.3
Q ss_pred CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC----CCCCC
Q psy7830 132 LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH----AEGGP 203 (364)
Q Consensus 132 l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~----~~~~~ 203 (364)
...+.+|||+|||+|..++.++.. +|+..|.++ .++..+.|++.|.. ....++.+...|-.+.. ....+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~--~~~~~v~v~~L~Wg~~~~~~~~~~~~ 119 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS--LLDGRVSVRPLDWGDELDSDLLEPHS 119 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT----------EEEE--TTS-HHHHHHS-SS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc--cccccccCcEEEecCccccccccccc
Confidence 567899999999999999888877 999999999 99999999987421 11346777777653311 12357
Q ss_pred eeEEEEccCh------HHHHHHHHhccCCCcEEEEEEcC
Q psy7830 204 YDVIFFGAGT------TEVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 204 fD~Ii~~~~~------~~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
||+|++.-.+ ..+...+.++|+++|.+++....
T Consensus 120 ~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 120 FDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp BSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred CCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 9999875443 45788899999999987776644
No 185
>PRK04148 hypothetical protein; Provisional
Probab=98.60 E-value=5.1e-07 Score=75.88 Aligned_cols=92 Identities=13% Similarity=0.089 Sum_probs=71.0
Q ss_pred CCCCEEEEECCCccH-HHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC-CCCeeEEE
Q psy7830 133 QNGSRVLDIGSGQGY-MATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE-GGPYDVIF 208 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~-~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~-~~~fD~Ii 208 (364)
..+.+|||||||+|. .+..|++. .|+++|+++.+++.++++ .++++.+|..+...+ ...+|+|+
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~------------~~~~v~dDlf~p~~~~y~~a~liy 82 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL------------GLNAFVDDLFNPNLEIYKNAKLIY 82 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh------------CCeEEECcCCCCCHHHHhcCCEEE
Confidence 356899999999996 88888887 999999999998888764 367899998865443 36799999
Q ss_pred EccChHHHHHHHHhccCC-CcEEEEEEcC
Q psy7830 209 FGAGTTEVSKTILSQLKP-NGRIVAPVGN 236 (364)
Q Consensus 209 ~~~~~~~l~~~l~~~Lkp-GG~Lvi~~~~ 236 (364)
+.-+-.++.+.+.++-+. |.-+++.-..
T Consensus 83 sirpp~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 83 SIRPPRDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred EeCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 999888877766666544 5555554433
No 186
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.60 E-value=3.4e-07 Score=84.65 Aligned_cols=90 Identities=23% Similarity=0.215 Sum_probs=69.2
Q ss_pred CCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEcc
Q psy7830 134 NGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGA 211 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~ 211 (364)
...++||||+|.|..+..++.. +|++.|.|+.|....++ .+++++..|- ....+.+||+|.|-.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~------------kg~~vl~~~~--w~~~~~~fDvIscLN 159 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSK------------KGFTVLDIDD--WQQTDFKFDVISCLN 159 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHh------------CCCeEEehhh--hhccCCceEEEeehh
Confidence 3568999999999999999998 99999999999655443 1344443332 222346899999887
Q ss_pred ChH------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830 212 GTT------EVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 212 ~~~------~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
.+. .+++.+++.|+|+|++++.+--+
T Consensus 160 vLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP 191 (265)
T PF05219_consen 160 VLDRCDRPLTLLRDIRRALKPNGRLILAVVLP 191 (265)
T ss_pred hhhccCCHHHHHHHHHHHhCCCCEEEEEEEec
Confidence 775 37899999999999999887544
No 187
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.59 E-value=2.7e-07 Score=89.12 Aligned_cols=102 Identities=25% Similarity=0.228 Sum_probs=87.6
Q ss_pred CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830 132 LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF 208 (364)
Q Consensus 132 l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii 208 (364)
..+|.+|+|+-||-|++++.+|+. +|+++|++|.+++..++|+..|. +. ..+..+++|+....+..+.+|.|+
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~---v~-~~v~~i~gD~rev~~~~~~aDrIi 261 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNK---VE-GRVEPILGDAREVAPELGVADRII 261 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcC---cc-ceeeEEeccHHHhhhccccCCEEE
Confidence 467999999999999999999988 69999999999999999999865 32 248999999988776557899999
Q ss_pred EccCh--HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830 209 FGAGT--TEVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 209 ~~~~~--~~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
++.+. +..+....+.+++||.+-+.....
T Consensus 262 m~~p~~a~~fl~~A~~~~k~~g~iHyy~~~~ 292 (341)
T COG2520 262 MGLPKSAHEFLPLALELLKDGGIIHYYEFVP 292 (341)
T ss_pred eCCCCcchhhHHHHHHHhhcCcEEEEEeccc
Confidence 99875 568888999999999998866554
No 188
>PRK00536 speE spermidine synthase; Provisional
Probab=98.58 E-value=4.5e-07 Score=84.94 Aligned_cols=102 Identities=11% Similarity=-0.024 Sum_probs=80.2
Q ss_pred CCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEc
Q psy7830 133 QNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFG 210 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~ 210 (364)
+...+||-+|.|.|..+..+++. +|+.||+|+++++.+++.+.... .++..++++++.. ..+ ...++||+|+++
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~-~~~~DpRv~l~~~-~~~--~~~~~fDVIIvD 146 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFH-EVKNNKNFTHAKQ-LLD--LDIKKYDLIICL 146 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHH-HhhcCCCEEEeeh-hhh--ccCCcCCEEEEc
Confidence 45689999999999999999998 99999999999999999665511 1255678888762 211 113689999999
Q ss_pred cCh-HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830 211 AGT-TEVSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 211 ~~~-~~l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
... ....+.+.+.|+|||+++...++..
T Consensus 147 s~~~~~fy~~~~~~L~~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 147 QEPDIHKIDGLKRMLKEDGVFISVAKHPL 175 (262)
T ss_pred CCCChHHHHHHHHhcCCCcEEEECCCCcc
Confidence 554 4677899999999999999877654
No 189
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.58 E-value=1.6e-07 Score=92.10 Aligned_cols=118 Identities=16% Similarity=0.204 Sum_probs=74.7
Q ss_pred ChHHHHHHHHHHHhccCCC-CCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830 116 EPPSYIARCLEQLVDHLQN-GSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK 192 (364)
Q Consensus 116 s~P~~~a~~l~~L~~~l~~-g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~ 192 (364)
..+.....+++++.+.+.. +.+|||+.||.|.+++.+|.. +|+|+|+++.+++.|++|+..|. ..|++|+.+
T Consensus 177 vN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~-----i~n~~f~~~ 251 (352)
T PF05958_consen 177 VNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNG-----IDNVEFIRG 251 (352)
T ss_dssp SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT-------SEEEEE-
T ss_pred CcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcC-----CCcceEEEe
Confidence 4455555555555444332 238999999999999999998 99999999999999999999854 479999988
Q ss_pred CCCCCCC----------------CCCCeeEEEEccChHHHHHHHHhcc-CCCcEEEEEEcCCC
Q psy7830 193 DARWGHA----------------EGGPYDVIFFGAGTTEVSKTILSQL-KPNGRIVAPVGNVW 238 (364)
Q Consensus 193 D~~~~~~----------------~~~~fD~Ii~~~~~~~l~~~l~~~L-kpGG~Lvi~~~~~~ 238 (364)
++.+... ....+|+|+.+.+-..+.+.+.+.+ ++.=++++|+.+..
T Consensus 252 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~~~~ivYvSCnP~t 314 (352)
T PF05958_consen 252 DAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIKKLKRIVYVSCNPAT 314 (352)
T ss_dssp -SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHHHSSEEEEEES-HHH
T ss_pred eccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHhcCCeEEEEECCHHH
Confidence 7643211 1126899999877654322222211 34567888887755
No 190
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.57 E-value=4.3e-07 Score=84.14 Aligned_cols=88 Identities=23% Similarity=0.285 Sum_probs=71.4
Q ss_pred CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830 132 LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI 207 (364)
Q Consensus 132 l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I 207 (364)
..+..+|+|||+|+|.++..+++. +++.+|. |.+++.+++ . ++|+++.+|+.+..+ . +|++
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---~--------~rv~~~~gd~f~~~P--~-~D~~ 162 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---A--------DRVEFVPGDFFDPLP--V-ADVY 162 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---T--------TTEEEEES-TTTCCS--S-ESEE
T ss_pred ccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---c--------cccccccccHHhhhc--c-ccce
Confidence 456679999999999999999887 9999999 888888887 2 589999999984332 3 9999
Q ss_pred EEccChHH--------HHHHHHhccCCC--cEEEEEE
Q psy7830 208 FFGAGTTE--------VSKTILSQLKPN--GRIVAPV 234 (364)
Q Consensus 208 i~~~~~~~--------l~~~l~~~LkpG--G~Lvi~~ 234 (364)
+....++. +++++++.|+|| |+|++..
T Consensus 163 ~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 163 LLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp EEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred eeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 98888763 789999999999 9999865
No 191
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.55 E-value=3.5e-07 Score=79.60 Aligned_cols=77 Identities=21% Similarity=0.171 Sum_probs=61.2
Q ss_pred EEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEE
Q psy7830 158 VRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIV 231 (364)
Q Consensus 158 ~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lv 231 (364)
+|+|+|+.|++.|+++...... ....+++++++|+.+.+..+++||+|++...+++ .++++.++|||||.++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~--~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR--SCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc--cCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEE
Confidence 4899999999999887653100 1124799999999988777779999999877764 5789999999999999
Q ss_pred EEEcC
Q psy7830 232 APVGN 236 (364)
Q Consensus 232 i~~~~ 236 (364)
+....
T Consensus 79 i~d~~ 83 (160)
T PLN02232 79 ILDFN 83 (160)
T ss_pred EEECC
Confidence 86544
No 192
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.55 E-value=4.3e-07 Score=86.02 Aligned_cols=101 Identities=22% Similarity=0.204 Sum_probs=82.3
Q ss_pred CEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCC-CCeeEEEEc
Q psy7830 136 SRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEG-GPYDVIFFG 210 (364)
Q Consensus 136 ~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~-~~fD~Ii~~ 210 (364)
.+||-||-|.|..+..+.+. +++.||+++++++.+++.+...... ...++++++..|+....... .+||+|+++
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~-~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D 156 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGG-ADDPRVEIIIDDGVEFLRDCEEKFDVIIVD 156 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccc-cCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence 59999999999999999988 9999999999999999988761100 12579999999998765433 379999987
Q ss_pred cCh----------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830 211 AGT----------TEVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 211 ~~~----------~~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
..- ....+.+.+.|+++|+++...++.
T Consensus 157 ~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~ 193 (282)
T COG0421 157 STDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSP 193 (282)
T ss_pred CCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence 543 246789999999999999986654
No 193
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.54 E-value=2.4e-07 Score=85.23 Aligned_cols=96 Identities=14% Similarity=0.142 Sum_probs=63.0
Q ss_pred CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHH-HHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830 133 QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNN-SLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF 208 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~-a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii 208 (364)
..+.+|||+|||+|+++..+++. +|+|+|+++.++.. .+++..--. ++..|++.. +..+.+.+...||+++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~---~~~~ni~~~--~~~~~~~d~~~~Dvsf 148 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKV---LERTNIRYV--TPADIFPDFATFDVSF 148 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeE---eecCCcccC--CHhHcCCCceeeeEEE
Confidence 46789999999999999999887 89999999977765 332211000 112233311 1111222224688777
Q ss_pred EccChHHHHHHHHhccCCCcEEEEEEcC
Q psy7830 209 FGAGTTEVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 209 ~~~~~~~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
+. +..+++.+.+.|++ |.+++-+-+
T Consensus 149 iS--~~~~l~~i~~~l~~-~~~~~L~KP 173 (228)
T TIGR00478 149 IS--LISILPELDLLLNP-NDLTLLFKP 173 (228)
T ss_pred ee--hHhHHHHHHHHhCc-CeEEEEcCh
Confidence 54 44588999999999 888876644
No 194
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.53 E-value=4.6e-07 Score=81.35 Aligned_cols=104 Identities=20% Similarity=0.091 Sum_probs=73.1
Q ss_pred HHHHHhccCCCCC-EEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEE-EEEcCCCCC
Q psy7830 124 CLEQLVDHLQNGS-RVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLE-FILKDARWG 197 (364)
Q Consensus 124 ~l~~L~~~l~~g~-~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~-~~~~D~~~~ 197 (364)
+++.|.+++.+.. +|||||||||..+.++++. .-.-.|.++......+..+.. .+.+|+. -+..|+...
T Consensus 14 Il~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~-----~~~~Nv~~P~~lDv~~~ 88 (204)
T PF06080_consen 14 ILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAE-----AGLPNVRPPLALDVSAP 88 (204)
T ss_pred HHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHh-----cCCcccCCCeEeecCCC
Confidence 4444544455555 5999999999999999987 677789999988777776655 1123321 233454433
Q ss_pred -CC-------CCCCeeEEEEccChH--------HHHHHHHhccCCCcEEEE
Q psy7830 198 -HA-------EGGPYDVIFFGAGTT--------EVSKTILSQLKPNGRIVA 232 (364)
Q Consensus 198 -~~-------~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi 232 (364)
+. ...+||.|++...+| .++....+.|++||.|++
T Consensus 89 ~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~ 139 (204)
T PF06080_consen 89 PWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFL 139 (204)
T ss_pred CCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEE
Confidence 11 235899999877765 377889999999999886
No 195
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.52 E-value=9.2e-07 Score=91.25 Aligned_cols=98 Identities=12% Similarity=0.095 Sum_probs=69.7
Q ss_pred CCCccChHHHHHHHHHHHhccCC-----CCCEEEEECCCccHHHHHHHcc------------eEEEEeCCHHHHHHHHHH
Q psy7830 111 NQVVMEPPSYIARCLEQLVDHLQ-----NGSRVLDIGSGQGYMATAKEWL------------SSVRQLLLPETLNNSLKN 173 (364)
Q Consensus 111 ~g~~~s~P~~~a~~l~~L~~~l~-----~g~~VLDiGcGsG~~a~~la~~------------~V~~vDis~~~l~~a~~~ 173 (364)
.|++-+.+.++..|++.+.+... .+.+|||.|||+|.+...++.. .++|+|+++.++..++.+
T Consensus 3 ~GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 3 YGTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred CcccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 36777888899999988753222 3468999999999999877643 689999999999999999
Q ss_pred HHhcCCCCCCCCCEEEEEcCCCCC----C-CCCCCeeEEEEccCh
Q psy7830 174 IKISRPDLLQSKTLEFILKDARWG----H-AEGGPYDVIFFGAGT 213 (364)
Q Consensus 174 ~~~~~~~~l~~~~v~~~~~D~~~~----~-~~~~~fD~Ii~~~~~ 213 (364)
+.. .+...+.+...|.... . ...+.||+|+.|.++
T Consensus 83 l~~-----~~~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy 122 (524)
T TIGR02987 83 LGE-----FALLEINVINFNSLSYVLLNIESYLDLFDIVITNPPY 122 (524)
T ss_pred Hhh-----cCCCCceeeecccccccccccccccCcccEEEeCCCc
Confidence 876 2111344454543321 1 112579999998765
No 196
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.51 E-value=5.9e-07 Score=83.75 Aligned_cols=104 Identities=29% Similarity=0.303 Sum_probs=81.0
Q ss_pred CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHh-cCCCCCCCCCEEEEEcCCCCCCCC-CC-Cee
Q psy7830 133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKI-SRPDLLQSKTLEFILKDARWGHAE-GG-PYD 205 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~-~~~~~l~~~~v~~~~~D~~~~~~~-~~-~fD 205 (364)
....+||-||-|.|..+..+.+. +|+.||+|+.+++.+++.+.. ... ...++++++.+|+...... .+ +||
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--~~d~r~~i~~~Dg~~~l~~~~~~~yD 152 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG--LDDPRVRIIIGDGRKFLKETQEEKYD 152 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT--GGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc--cCCCceEEEEhhhHHHHHhccCCccc
Confidence 46789999999999999999887 899999999999999998765 210 2347999999998765432 24 799
Q ss_pred EEEEccCh----------HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830 206 VIFFGAGT----------TEVSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 206 ~Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
+|+++..- ....+.+.+.|+|||++++......
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~ 195 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPF 195 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcc
Confidence 99986543 3467899999999999999875543
No 197
>KOG3191|consensus
Probab=98.50 E-value=1.6e-06 Score=75.68 Aligned_cols=97 Identities=20% Similarity=0.257 Sum_probs=78.1
Q ss_pred CCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830 135 GSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF 209 (364)
Q Consensus 135 g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~ 209 (364)
...++|||||||..+..+++. .+.++|++|.+++..++.+..|. -++..++.|....... ++.|+++.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~------~~~~~V~tdl~~~l~~-~~VDvLvf 116 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR------VHIDVVRTDLLSGLRN-ESVDVLVF 116 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC------CccceeehhHHhhhcc-CCccEEEE
Confidence 567999999999999999887 68899999999999998887643 3688899998776654 78999998
Q ss_pred ccChH---------------------------HHHHHHHhccCCCcEEEEEEcCCC
Q psy7830 210 GAGTT---------------------------EVSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 210 ~~~~~---------------------------~l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
|.++. .+++.+-..|.|.|.+++......
T Consensus 117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N 172 (209)
T KOG3191|consen 117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN 172 (209)
T ss_pred CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence 87651 144566678899999988775544
No 198
>KOG1500|consensus
Probab=98.48 E-value=5.9e-07 Score=85.12 Aligned_cols=98 Identities=20% Similarity=0.213 Sum_probs=76.9
Q ss_pred CCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEc
Q psy7830 134 NGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFG 210 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~ 210 (364)
.+..|||+|||+|+++..++.. +|+++|.| +|.+.|++-++.|+ + .++|.++.+.+++... .++.|+|++.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~---~-~~rItVI~GKiEdieL-PEk~DviISE 250 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNN---L-ADRITVIPGKIEDIEL-PEKVDVIISE 250 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCC---c-cceEEEccCccccccC-chhccEEEec
Confidence 5778999999999999888877 99999987 78899998887754 3 3689999999887654 3689999985
Q ss_pred cCh-----HHHHH---HHHhccCCCcEEEEEEcCC
Q psy7830 211 AGT-----TEVSK---TILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 211 ~~~-----~~l~~---~l~~~LkpGG~Lvi~~~~~ 237 (364)
..- +.+++ ..++.|||.|.++-++++-
T Consensus 251 PMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~gdi 285 (517)
T KOG1500|consen 251 PMGYMLVNERMLESYLHARKWLKPNGKMFPTVGDI 285 (517)
T ss_pred cchhhhhhHHHHHHHHHHHhhcCCCCcccCcccce
Confidence 432 22332 4558999999998777664
No 199
>KOG2915|consensus
Probab=98.48 E-value=1.3e-06 Score=80.83 Aligned_cols=109 Identities=17% Similarity=0.153 Sum_probs=88.9
Q ss_pred HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC
Q psy7830 120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA 194 (364)
Q Consensus 120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~ 194 (364)
-.+.++..|. +.||.+|||-|+|+|.++.++++. +++..|..+...+.|++.++... ++ +|+++..-|+
T Consensus 93 Dia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg---i~-~~vt~~hrDV 166 (314)
T KOG2915|consen 93 DIAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG---IG-DNVTVTHRDV 166 (314)
T ss_pred cHHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC---CC-cceEEEEeec
Confidence 3478888887 899999999999999999999887 99999999999999999998832 33 5899999998
Q ss_pred CCCCCC--CCCeeEEEEccChHHH-HHHHHhccCCCcEEEEEE
Q psy7830 195 RWGHAE--GGPYDVIFFGAGTTEV-SKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 195 ~~~~~~--~~~fD~Ii~~~~~~~l-~~~l~~~LkpGG~Lvi~~ 234 (364)
...-+. ...+|.|+.+.+.+|. .+.+.+.||.+|.-+++.
T Consensus 167 c~~GF~~ks~~aDaVFLDlPaPw~AiPha~~~lk~~g~r~csF 209 (314)
T KOG2915|consen 167 CGSGFLIKSLKADAVFLDLPAPWEAIPHAAKILKDEGGRLCSF 209 (314)
T ss_pred ccCCccccccccceEEEcCCChhhhhhhhHHHhhhcCceEEec
Confidence 754332 4679999999999874 567777999877444443
No 200
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.47 E-value=2.1e-06 Score=83.63 Aligned_cols=122 Identities=16% Similarity=0.087 Sum_probs=93.2
Q ss_pred ecCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-e-------------------------------
Q psy7830 109 FANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-S------------------------------- 156 (364)
Q Consensus 109 ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-~------------------------------- 156 (364)
...|..+-.+.+.+.++.... -+++..++|.=||||++.+.+|.. .
T Consensus 168 ~~~g~ApLketLAaAil~lag--w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~ 245 (381)
T COG0116 168 VYDGPAPLKETLAAAILLLAG--WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAE 245 (381)
T ss_pred ccCCCCCchHHHHHHHHHHcC--CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHH
Confidence 334455556666666666554 467789999999999999887765 2
Q ss_pred -----------EEEEeCCHHHHHHHHHHHHh-cCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChHH---------
Q psy7830 157 -----------SVRQLLLPETLNNSLKNIKI-SRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTE--------- 215 (364)
Q Consensus 157 -----------V~~vDis~~~l~~a~~~~~~-~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~--------- 215 (364)
++|+|+|+.+++.|+.|+.. +. .+.|+|.++|+..+....+.+|+|++|.++-.
T Consensus 246 ~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv-----~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~ 320 (381)
T COG0116 246 ERARRGKELPIIYGSDIDPRHIEGAKANARAAGV-----GDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVA 320 (381)
T ss_pred HHHhhcCccceEEEecCCHHHHHHHHHHHHhcCC-----CceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHH
Confidence 77999999999999999988 43 25799999999887654368999999988732
Q ss_pred -----HHHHHHhccCCCcEEEEEEcCC
Q psy7830 216 -----VSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 216 -----l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
+.+.+.+.++--++.+++....
T Consensus 321 ~LY~~fg~~lk~~~~~ws~~v~tt~e~ 347 (381)
T COG0116 321 KLYREFGRTLKRLLAGWSRYVFTTSED 347 (381)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEccHH
Confidence 3456777888888888876554
No 201
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.47 E-value=9.1e-07 Score=87.19 Aligned_cols=126 Identities=13% Similarity=0.109 Sum_probs=92.1
Q ss_pred cccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHH
Q psy7830 101 GFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIK 175 (364)
Q Consensus 101 ~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~ 175 (364)
+|.++...+...-++ ++......... -..+.+|||+.||+|..++.++.. +|+++|+++.+++.+++|++
T Consensus 16 vFYNP~~~~nRDlsv----~~~~~~~~~~~-~~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~ 90 (374)
T TIGR00308 16 VFYNPRMQFNRDLSV----TCIQAFDNLYG-KECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVE 90 (374)
T ss_pred cccCchhhccccHHH----HHHHHHHHhhC-CcCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 677777777665433 22222221110 011358999999999999998864 79999999999999999998
Q ss_pred hcCCCCCCCCCEEEEEcCCCCCCCC-CCCeeEEEEccChH--HHHHHHHhccCCCcEEEEEEcC
Q psy7830 176 ISRPDLLQSKTLEFILKDARWGHAE-GGPYDVIFFGAGTT--EVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 176 ~~~~~~l~~~~v~~~~~D~~~~~~~-~~~fD~Ii~~~~~~--~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
.|. ..++++.+.|+...... ...||+|+.+..-. .++..+.+.+++||.|.++..+
T Consensus 91 ~N~-----~~~~~v~~~Da~~~l~~~~~~fDvIdlDPfGs~~~fld~al~~~~~~glL~vTaTD 149 (374)
T TIGR00308 91 YNS-----VENIEVPNEDAANVLRYRNRKFHVIDIDPFGTPAPFVDSAIQASAERGLLLVTATD 149 (374)
T ss_pred HhC-----CCcEEEEchhHHHHHHHhCCCCCEEEeCCCCCcHHHHHHHHHhcccCCEEEEEecc
Confidence 843 34789999998765432 25799999987332 5778888999999999998544
No 202
>KOG2361|consensus
Probab=98.46 E-value=1.9e-07 Score=84.92 Aligned_cols=96 Identities=19% Similarity=0.181 Sum_probs=72.6
Q ss_pred EEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC----CCCCCCCeeE
Q psy7830 137 RVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW----GHAEGGPYDV 206 (364)
Q Consensus 137 ~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~----~~~~~~~fD~ 206 (364)
+|||+|||.|.....+.+. +|+++|.||.+++..+++...+ ..++...+.|+.. .+...+++|.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~------e~~~~afv~Dlt~~~~~~~~~~~svD~ 147 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD------ESRVEAFVWDLTSPSLKEPPEEGSVDI 147 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc------hhhhcccceeccchhccCCCCcCccce
Confidence 7999999999999888776 8999999999999999876542 1355556666543 2233578998
Q ss_pred EEEccChH--------HHHHHHHhccCCCcEEEEEEcCCC
Q psy7830 207 IFFGAGTT--------EVSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 207 Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
|.+...+. ..++++.++|||||.|++..-..+
T Consensus 148 it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~ 187 (264)
T KOG2361|consen 148 ITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRY 187 (264)
T ss_pred EEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccc
Confidence 86554442 367899999999999998765443
No 203
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.45 E-value=9.6e-07 Score=78.65 Aligned_cols=96 Identities=23% Similarity=0.216 Sum_probs=78.1
Q ss_pred EEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccC
Q psy7830 137 RVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAG 212 (364)
Q Consensus 137 ~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~ 212 (364)
+++|+|+|.|.-++.++-. +++.+|.....+...+.-... ++.+|++++.+.+++ ......||+|++-+.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~-----L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRE-----LGLSNVEVINGRAEE-PEYRESFDVVTARAV 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHH-----HT-SSEEEEES-HHH-TTTTT-EEEEEEESS
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHH-----hCCCCEEEEEeeecc-cccCCCccEEEeehh
Confidence 8999999999888777765 899999999999999988877 566899999999987 233578999998665
Q ss_pred h--HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830 213 T--TEVSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 213 ~--~~l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
. ..+.+.+...+++||++++.-+...
T Consensus 125 ~~l~~l~~~~~~~l~~~G~~l~~KG~~~ 152 (184)
T PF02527_consen 125 APLDKLLELARPLLKPGGRLLAYKGPDA 152 (184)
T ss_dssp SSHHHHHHHHGGGEEEEEEEEEEESS--
T ss_pred cCHHHHHHHHHHhcCCCCEEEEEcCCCh
Confidence 4 5788899999999999999888754
No 204
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.43 E-value=3.4e-07 Score=79.68 Aligned_cols=72 Identities=21% Similarity=0.179 Sum_probs=54.4
Q ss_pred EEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCC-CCCEEEEEcCCCCCCCCC--C-CeeEEEEc
Q psy7830 137 RVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQ-SKTLEFILKDARWGHAEG--G-PYDVIFFG 210 (364)
Q Consensus 137 ~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~-~~~v~~~~~D~~~~~~~~--~-~fD~Ii~~ 210 (364)
.|+|+.||.|+.++.+|+. +|+++|+++..++.|+.|++- .| .++|+++++|..+..... . .||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~v-----YGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEV-----YGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHH-----TT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHH-----cCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 6999999999999999998 999999999999999999988 33 358999999987654321 1 28999987
Q ss_pred cCh
Q psy7830 211 AGT 213 (364)
Q Consensus 211 ~~~ 213 (364)
.+.
T Consensus 77 PPW 79 (163)
T PF09445_consen 77 PPW 79 (163)
T ss_dssp --B
T ss_pred CCC
Confidence 553
No 205
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.38 E-value=6e-07 Score=85.55 Aligned_cols=87 Identities=15% Similarity=0.120 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830 118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK 192 (364)
Q Consensus 118 P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~ 192 (364)
|-+...+++.|. +.++..++|.+||.|+.+..+++. +|+|+|.|+.+++.+++++.. ..+++++.+
T Consensus 5 pVll~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-------~~ri~~i~~ 75 (296)
T PRK00050 5 PVLLDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-------FGRFTLVHG 75 (296)
T ss_pred cccHHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-------CCcEEEEeC
Confidence 558889999987 688999999999999999999876 799999999999999988744 248999999
Q ss_pred CCCCCCC---C-CCCeeEEEEccCh
Q psy7830 193 DARWGHA---E-GGPYDVIFFGAGT 213 (364)
Q Consensus 193 D~~~~~~---~-~~~fD~Ii~~~~~ 213 (364)
|..+... . ..++|.|+++..+
T Consensus 76 ~f~~l~~~l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 76 NFSNLKEVLAEGLGKVDGILLDLGV 100 (296)
T ss_pred CHHHHHHHHHcCCCccCEEEECCCc
Confidence 9875421 1 1279999987655
No 206
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.36 E-value=1.8e-06 Score=88.52 Aligned_cols=100 Identities=16% Similarity=0.073 Sum_probs=81.4
Q ss_pred CCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC--CCCCCCeeEE
Q psy7830 134 NGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG--HAEGGPYDVI 207 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~--~~~~~~fD~I 207 (364)
.+..+||||||.|.+...+|.. .++|+|++...+..+.+.+.. .+..|+.++..|+... ...++++|.|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~-----~~l~N~~~~~~~~~~~~~~~~~~sv~~i 421 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGE-----QNITNFLLFPNNLDLILNDLPNNSLDGI 421 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHH-----cCCCeEEEEcCCHHHHHHhcCcccccEE
Confidence 3567999999999999999988 899999999998888887766 2347999988886422 1335789999
Q ss_pred EEccChHH--------------HHHHHHhccCCCcEEEEEEcCCC
Q psy7830 208 FFGAGTTE--------------VSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 208 i~~~~~~~--------------l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
+.+.+-+| ++..+.+.|||||.+.+.+....
T Consensus 422 ~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~ 466 (506)
T PRK01544 422 YILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIEN 466 (506)
T ss_pred EEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHH
Confidence 99988754 67899999999999998876643
No 207
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.35 E-value=5.1e-06 Score=88.55 Aligned_cols=122 Identities=16% Similarity=0.076 Sum_probs=88.9
Q ss_pred CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc------------------------------------
Q psy7830 112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL------------------------------------ 155 (364)
Q Consensus 112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~------------------------------------ 155 (364)
+..+..+.+.+.++.... ..+++..++|.+||+|.+.+.++..
T Consensus 169 ~~Apl~etlAaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~ 247 (702)
T PRK11783 169 GEAPLKENLAAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQER 247 (702)
T ss_pred CCCCCcHHHHHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHH
Confidence 345567778777776543 2357889999999999999776531
Q ss_pred ----------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC--CCCeeEEEEccChHH--------
Q psy7830 156 ----------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE--GGPYDVIFFGAGTTE-------- 215 (364)
Q Consensus 156 ----------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~--~~~fD~Ii~~~~~~~-------- 215 (364)
+++|+|+++.+++.|++|+.... +. +.+++..+|+.+.... .++||+|++|.++..
T Consensus 248 ~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g---~~-~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l 323 (702)
T PRK11783 248 ARAGLAELPSKFYGSDIDPRVIQAARKNARRAG---VA-ELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPAL 323 (702)
T ss_pred HhhcccccCceEEEEECCHHHHHHHHHHHHHcC---CC-cceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHH
Confidence 48999999999999999998832 21 3689999999876433 246999999988621
Q ss_pred --HHHH---HHhccCCCcEEEEEEcCCC
Q psy7830 216 --VSKT---ILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 216 --l~~~---l~~~LkpGG~Lvi~~~~~~ 238 (364)
+-.. ..+...+|+.+++-.++..
T Consensus 324 ~~lY~~lg~~lk~~~~g~~~~llt~~~~ 351 (702)
T PRK11783 324 IALYSQLGRRLKQQFGGWNAALFSSSPE 351 (702)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEeCCHH
Confidence 2222 2333448999988887665
No 208
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.35 E-value=1.9e-06 Score=77.93 Aligned_cols=98 Identities=22% Similarity=0.187 Sum_probs=69.8
Q ss_pred CCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEcc
Q psy7830 135 GSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGA 211 (364)
Q Consensus 135 g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~ 211 (364)
..+.||.|+|-|..|..+... +|..+|..+..++.|++.+..+. ....++++.-..++.++.++||+|++.=
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-----~~v~~~~~~gLQ~f~P~~~~YDlIW~QW 130 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-----PRVGEFYCVGLQDFTPEEGKYDLIWIQW 130 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-----CCEEEEEES-GGG----TT-EEEEEEES
T ss_pred cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-----CCcceEEecCHhhccCCCCcEeEEEehH
Confidence 468999999999999866544 99999999999999998765511 1235677777776666667999999865
Q ss_pred ChHH--------HHHHHHhccCCCcEEEEEEcCC
Q psy7830 212 GTTE--------VSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 212 ~~~~--------l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
.+.| ++..+...|+|||.|++-.+..
T Consensus 131 ~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~ 164 (218)
T PF05891_consen 131 CLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVS 164 (218)
T ss_dssp -GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred hhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCC
Confidence 5543 5789999999999999977554
No 209
>KOG1663|consensus
Probab=98.33 E-value=6.1e-06 Score=74.82 Aligned_cols=105 Identities=27% Similarity=0.359 Sum_probs=81.2
Q ss_pred HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHh-cCCCCCCCCCEEEEEcCCC
Q psy7830 122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKI-SRPDLLQSKTLEFILKDAR 195 (364)
Q Consensus 122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~-~~~~~l~~~~v~~~~~D~~ 195 (364)
..+++.+.+ +....++||+|.=+||.+..+|.. +|+++|++++..+.+.+-.+. +. ...|+++.+++.
T Consensus 62 g~fl~~li~-~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv-----~~KI~~i~g~a~ 135 (237)
T KOG1663|consen 62 GQFLQMLIR-LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV-----DHKITFIEGPAL 135 (237)
T ss_pred HHHHHHHHH-HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc-----cceeeeeecchh
Confidence 333444432 446789999999999999998877 999999999999999776665 22 358999999876
Q ss_pred CCC----C--CCCCeeEEEEccChH---HHHHHHHhccCCCcEEEE
Q psy7830 196 WGH----A--EGGPYDVIFFGAGTT---EVSKTILSQLKPNGRIVA 232 (364)
Q Consensus 196 ~~~----~--~~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi 232 (364)
+.. . +.+.||++|.+.--. ...+++.+++|+||+|++
T Consensus 136 esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 136 ESLDELLADGESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred hhHHHHHhcCCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEE
Confidence 432 1 246899999987543 466889999999999986
No 210
>KOG2940|consensus
Probab=98.33 E-value=2.5e-07 Score=83.47 Aligned_cols=108 Identities=13% Similarity=0.071 Sum_probs=83.8
Q ss_pred HHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC
Q psy7830 124 CLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE 200 (364)
Q Consensus 124 ~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~ 200 (364)
+++.+.+.-+....++|||||-|++...+... +++-+|.|-.|++.++..-... -.+...++|-+.+.+.
T Consensus 62 laDrvfD~kk~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~-------i~~~~~v~DEE~Ldf~ 134 (325)
T KOG2940|consen 62 LADRVFDCKKSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPS-------IETSYFVGDEEFLDFK 134 (325)
T ss_pred HHHHHHHHhhhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCc-------eEEEEEecchhccccc
Confidence 34444332345667999999999999998887 9999999999999987642111 1456677888877777
Q ss_pred CCCeeEEEEccChHHH------HHHHHhccCCCcEEEEEEcCCC
Q psy7830 201 GGPYDVIFFGAGTTEV------SKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 201 ~~~fD~Ii~~~~~~~l------~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
++++|+|++...++|+ ...+...|||+|.++.++....
T Consensus 135 ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fiasmlggd 178 (325)
T KOG2940|consen 135 ENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGD 178 (325)
T ss_pred ccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHHhccc
Confidence 8899999999998873 4578889999999999886654
No 211
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.32 E-value=3.9e-06 Score=78.98 Aligned_cols=100 Identities=15% Similarity=0.159 Sum_probs=80.0
Q ss_pred ccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830 114 VMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL 191 (364)
Q Consensus 114 ~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~ 191 (364)
.+..+.++..+++.+. +.++..|||+|+|+|.+|..+++. +|+++|+|+.+++..++++.. .++++++.
T Consensus 12 FL~~~~~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~-------~~~~~vi~ 82 (262)
T PF00398_consen 12 FLVDPNIADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFAS-------NPNVEVIN 82 (262)
T ss_dssp EEEHHHHHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTT-------CSSEEEEE
T ss_pred eeCCHHHHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhh-------cccceeee
Confidence 3467889999999987 678999999999999999999988 999999999999999987753 35899999
Q ss_pred cCCCCCCCCC---CCeeEEEEccChH---HHHHHHHh
Q psy7830 192 KDARWGHAEG---GPYDVIFFGAGTT---EVSKTILS 222 (364)
Q Consensus 192 ~D~~~~~~~~---~~fD~Ii~~~~~~---~l~~~l~~ 222 (364)
+|+....... .....|++|.+.. .++..+..
T Consensus 83 ~D~l~~~~~~~~~~~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 83 GDFLKWDLYDLLKNQPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp S-TTTSCGGGHCSSSEEEEEEEETGTGHHHHHHHHHH
T ss_pred cchhccccHHhhcCCceEEEEEecccchHHHHHHHhh
Confidence 9998765432 3567889998874 24444444
No 212
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.27 E-value=1.6e-06 Score=76.03 Aligned_cols=91 Identities=19% Similarity=0.220 Sum_probs=74.5
Q ss_pred CCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccC
Q psy7830 135 GSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAG 212 (364)
Q Consensus 135 g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~ 212 (364)
.+.+.|+|+|||.++..+++. +|+++|.+|...+.|.+|+.- -+..|++++.+|+....+ ...|+|+|-..
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v-----~g~~n~evv~gDA~~y~f--e~ADvvicEml 105 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHV-----PGDVNWEVVVGDARDYDF--ENADVVICEML 105 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCC-----CCCcceEEEecccccccc--cccceeHHHHh
Confidence 368999999999999999888 999999999999999999865 335799999999988765 46799987543
Q ss_pred hHH--------HHHHHHhccCCCcEEEE
Q psy7830 213 TTE--------VSKTILSQLKPNGRIVA 232 (364)
Q Consensus 213 ~~~--------l~~~l~~~LkpGG~Lvi 232 (364)
-.. ++..+.+.||.++.++=
T Consensus 106 DTaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 106 DTALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hHHhhcccccHHHHHHHHHhhcCCcccc
Confidence 322 45677888999888764
No 213
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.26 E-value=3.6e-06 Score=75.50 Aligned_cols=95 Identities=18% Similarity=0.098 Sum_probs=63.6
Q ss_pred HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC
Q psy7830 122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE 200 (364)
Q Consensus 122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~ 200 (364)
..++++|.. ..++..|-|+|||.+.++..+... .|+..|+... |-.+..+|+...+.+
T Consensus 61 d~iI~~l~~-~~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~--------------------n~~Vtacdia~vPL~ 119 (219)
T PF05148_consen 61 DVIIEWLKK-RPKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAP--------------------NPRVTACDIANVPLE 119 (219)
T ss_dssp HHHHHHHCT-S-TTS-EEEES-TT-HHHHH--S---EEEEESS-S--------------------STTEEES-TTS-S--
T ss_pred HHHHHHHHh-cCCCEEEEECCCchHHHHHhcccCceEEEeeccCC--------------------CCCEEEecCccCcCC
Confidence 677888874 345679999999999999877665 8999998532 223677999988888
Q ss_pred CCCeeEEEEccCh-----HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830 201 GGPYDVIFFGAGT-----TEVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 201 ~~~fD~Ii~~~~~-----~~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
+++.|+++...++ ...+.+..|.||+||.|.+..-..
T Consensus 120 ~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~S 161 (219)
T PF05148_consen 120 DESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKS 161 (219)
T ss_dssp TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred CCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecc
Confidence 8999999876554 457899999999999999877554
No 214
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.25 E-value=9e-06 Score=77.32 Aligned_cols=102 Identities=19% Similarity=0.218 Sum_probs=70.3
Q ss_pred CCEEEEECCCccH----HHHHHHcc--------eEEEEeCCHHHHHHHHHHHHh-----c---------C-------CC-
Q psy7830 135 GSRVLDIGSGQGY----MATAKEWL--------SSVRQLLLPETLNNSLKNIKI-----S---------R-------PD- 180 (364)
Q Consensus 135 g~~VLDiGcGsG~----~a~~la~~--------~V~~vDis~~~l~~a~~~~~~-----~---------~-------~~- 180 (364)
.-+|+..||+||- +++.+.+. +|+|+|+|+.+++.|++-.-. + . ..
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 3699999999994 33333331 799999999999999874200 0 0 00
Q ss_pred -CCC---CCCEEEEEcCCCCCC-CCCCCeeEEEEccChH--------HHHHHHHhccCCCcEEEEEEcC
Q psy7830 181 -LLQ---SKTLEFILKDARWGH-AEGGPYDVIFFGAGTT--------EVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 181 -~l~---~~~v~~~~~D~~~~~-~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
.+. ...|+|...|..+.. +..+.||+|+|..++. .++..+.+.|+|||+|++....
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence 000 135788888887643 2247899999966553 3778999999999998865543
No 215
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.24 E-value=6.8e-06 Score=73.96 Aligned_cols=103 Identities=18% Similarity=0.203 Sum_probs=63.2
Q ss_pred CCCEEEEECCCccH----HHHHHHcc---------eEEEEeCCHHHHHHHHHHH--------------Hh------cCCC
Q psy7830 134 NGSRVLDIGSGQGY----MATAKEWL---------SSVRQLLLPETLNNSLKNI--------------KI------SRPD 180 (364)
Q Consensus 134 ~g~~VLDiGcGsG~----~a~~la~~---------~V~~vDis~~~l~~a~~~~--------------~~------~~~~ 180 (364)
..-+|+..||++|. +++.+... +|+|+|+|+.+++.|++-. .+ +...
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 34689999999994 34444441 8999999999999998621 00 0000
Q ss_pred CCC---CCCEEEEEcCCCCCCCCCCCeeEEEEccChH--------HHHHHHHhccCCCcEEEEEEcC
Q psy7830 181 LLQ---SKTLEFILKDARWGHAEGGPYDVIFFGAGTT--------EVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 181 ~l~---~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
.+. ..+|+|...|..+..+..+.||+|+|-.++- .+++.+.+.|+|||.|++....
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCc
Confidence 000 1468999999887334457899999987763 4788999999999999975543
No 216
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.22 E-value=4.9e-06 Score=75.39 Aligned_cols=113 Identities=23% Similarity=0.294 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHh-c--C-CCCCCCCCEE
Q psy7830 117 PPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKI-S--R-PDLLQSKTLE 188 (364)
Q Consensus 117 ~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~-~--~-~~~l~~~~v~ 188 (364)
.|..+..+++.+. +.+++.++|+|||.|.....++.. +++|||+.+...+.|+...+. . . .......+++
T Consensus 27 ~~~~~~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~ 104 (205)
T PF08123_consen 27 SPEFVSKILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVE 104 (205)
T ss_dssp HHHHHHHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEE
T ss_pred CHHHHHHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccce
Confidence 4556778888776 789999999999999998777755 699999999999888764432 0 0 0002235788
Q ss_pred EEEcCCCCCCCC---CCCeeEEEEccCh--HHH---HHHHHhccCCCcEEE
Q psy7830 189 FILKDARWGHAE---GGPYDVIFFGAGT--TEV---SKTILSQLKPNGRIV 231 (364)
Q Consensus 189 ~~~~D~~~~~~~---~~~fD~Ii~~~~~--~~l---~~~l~~~LkpGG~Lv 231 (364)
+..+|+.+.... -...|+|++|..+ +.+ +..+...||+|-++|
T Consensus 105 l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 105 LIHGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARII 155 (205)
T ss_dssp EECS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEE
T ss_pred eeccCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEE
Confidence 888887643210 1347999998765 222 345566788887766
No 217
>KOG2187|consensus
Probab=98.18 E-value=6.4e-06 Score=82.39 Aligned_cols=113 Identities=16% Similarity=0.135 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC
Q psy7830 118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR 195 (364)
Q Consensus 118 P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~ 195 (364)
+.++..+-+++. +..+..++|++||||.++..+++. +|+|+|+++++++.|++|+..|. ..|.+|+++-++
T Consensus 369 evLys~i~e~~~--l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ng-----isNa~Fi~gqaE 441 (534)
T KOG2187|consen 369 EVLYSTIGEWAG--LPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQING-----ISNATFIVGQAE 441 (534)
T ss_pred HHHHHHHHHHhC--CCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcC-----ccceeeeecchh
Confidence 344445555555 678889999999999999999998 99999999999999999999854 579999999655
Q ss_pred CCCCCC-----CCee-EEEEccCh---H-HHHHHHHhccCCCcEEEEEEcCC
Q psy7830 196 WGHAEG-----GPYD-VIFFGAGT---T-EVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 196 ~~~~~~-----~~fD-~Ii~~~~~---~-~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
+..... ++=+ +++++.+- + .++..+.+.-++-=.+++++...
T Consensus 442 ~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~~ 493 (534)
T KOG2187|consen 442 DLFPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVSCNPH 493 (534)
T ss_pred hccchhcccCCCCCceEEEECCCcccccHHHHHHHHhccCccceEEEEcCHH
Confidence 443211 2335 44555443 2 24455555555777788887665
No 218
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.18 E-value=5.8e-06 Score=73.13 Aligned_cols=95 Identities=23% Similarity=0.248 Sum_probs=74.1
Q ss_pred CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830 133 QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF 209 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~ 209 (364)
-.|.+|||+|+|+|..+++.++. .|++.|++|...+.++-|.+.|. -++.+...|... ++..||+|++
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ang------v~i~~~~~d~~g---~~~~~Dl~La 148 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANG------VSILFTHADLIG---SPPAFDLLLA 148 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcc------ceeEEeeccccC---CCcceeEEEe
Confidence 36899999999999999988887 99999999999999999988854 378888888754 3467999987
Q ss_pred ccCh-----HH-HHHHHHhccCCCcEEEEEEcCCC
Q psy7830 210 GAGT-----TE-VSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 210 ~~~~-----~~-l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
...+ ++ +++ +...|+..|.-|+ +++++
T Consensus 149 gDlfy~~~~a~~l~~-~~~~l~~~g~~vl-vgdp~ 181 (218)
T COG3897 149 GDLFYNHTEADRLIP-WKDRLAEAGAAVL-VGDPG 181 (218)
T ss_pred eceecCchHHHHHHH-HHHHHHhCCCEEE-EeCCC
Confidence 6554 22 444 7777777777666 55554
No 219
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.08 E-value=2.1e-05 Score=75.15 Aligned_cols=88 Identities=13% Similarity=0.011 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC
Q psy7830 118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD 193 (364)
Q Consensus 118 P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D 193 (364)
|-+...+++.|. +++|..++|.-+|.|+.+..+++. +|+|+|.|+.+++.+++++... ..++.++.++
T Consensus 6 pVll~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~------~~R~~~i~~n 77 (305)
T TIGR00006 6 SVLLDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF------EGRVVLIHDN 77 (305)
T ss_pred chhHHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc------CCcEEEEeCC
Confidence 558889999887 688999999999999999999876 8999999999999999988651 1478898888
Q ss_pred CCCCCC-----CCCCeeEEEEccCh
Q psy7830 194 ARWGHA-----EGGPYDVIFFGAGT 213 (364)
Q Consensus 194 ~~~~~~-----~~~~fD~Ii~~~~~ 213 (364)
..+... ...++|.|+++..+
T Consensus 78 F~~l~~~l~~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 78 FANFFEHLDELLVTKIDGILVDLGV 102 (305)
T ss_pred HHHHHHHHHhcCCCcccEEEEeccC
Confidence 664321 12468988876443
No 220
>KOG2198|consensus
Probab=98.08 E-value=1.6e-05 Score=76.83 Aligned_cols=101 Identities=23% Similarity=0.226 Sum_probs=77.7
Q ss_pred CCCCCEEEEECCCccHHHHHHHcc--------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC----
Q psy7830 132 LQNGSRVLDIGSGQGYMATAKEWL--------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA---- 199 (364)
Q Consensus 132 l~~g~~VLDiGcGsG~~a~~la~~--------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~---- 199 (364)
++||++|||+|+.+|..++.+.+. .|++=|.++..+...+..+.+ +..+++.+...|+...+.
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~-----l~~~~~~v~~~~~~~~p~~~~~ 227 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKR-----LPSPNLLVTNHDASLFPNIYLK 227 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhc-----cCCcceeeecccceeccccccc
Confidence 789999999999999999887765 589999999998888887765 334566665555443221
Q ss_pred -----CCCCeeEEEEccChHH-----------------------------HHHHHHhccCCCcEEEEEEcCC
Q psy7830 200 -----EGGPYDVIFFGAGTTE-----------------------------VSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 200 -----~~~~fD~Ii~~~~~~~-----------------------------l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
+...||.|+++.+|.+ ++.+-.++||+||+||.|+-+-
T Consensus 228 ~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 228 DGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred cCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 2246999999888742 4567889999999999998654
No 221
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.05 E-value=1.4e-05 Score=72.65 Aligned_cols=96 Identities=26% Similarity=0.197 Sum_probs=78.9
Q ss_pred CCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCC-eeEEEE
Q psy7830 135 GSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGP-YDVIFF 209 (364)
Q Consensus 135 g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~-fD~Ii~ 209 (364)
+.+++|||+|.|.-++.+|-. +|+-+|.....+...+.-... ++.+|++++++.+++.... .. ||+|.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~e-----L~L~nv~i~~~RaE~~~~~-~~~~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKE-----LGLENVEIVHGRAEEFGQE-KKQYDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHH-----hCCCCeEEehhhHhhcccc-cccCcEEEe
Confidence 689999999999988887733 999999999999999888877 6678999999999877643 23 999998
Q ss_pred ccC--hHHHHHHHHhccCCCcEEEEEEcC
Q psy7830 210 GAG--TTEVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 210 ~~~--~~~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
-+. +..+.+-+..++|+||.+++.-+.
T Consensus 142 RAva~L~~l~e~~~pllk~~g~~~~~k~~ 170 (215)
T COG0357 142 RAVASLNVLLELCLPLLKVGGGFLAYKGL 170 (215)
T ss_pred ehccchHHHHHHHHHhcccCCcchhhhHH
Confidence 654 457888899999999988654443
No 222
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.04 E-value=7.9e-05 Score=70.09 Aligned_cols=101 Identities=15% Similarity=0.120 Sum_probs=69.7
Q ss_pred CCEEEEECCCccH----HHHHHHcc---------eEEEEeCCHHHHHHHHHH------HHhcCC-----CC---C-C---
Q psy7830 135 GSRVLDIGSGQGY----MATAKEWL---------SSVRQLLLPETLNNSLKN------IKISRP-----DL---L-Q--- 183 (364)
Q Consensus 135 g~~VLDiGcGsG~----~a~~la~~---------~V~~vDis~~~l~~a~~~------~~~~~~-----~~---l-~--- 183 (364)
.-+|+-.||+||- +++.+.+. +|+|+|+|..+++.|+.- ..++.. ++ . +
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5689999999993 33333222 899999999999999751 101100 00 0 0
Q ss_pred ------CCCEEEEEcCCCCCCCCCCCeeEEEEccCh--------HHHHHHHHhccCCCcEEEEEEc
Q psy7830 184 ------SKTLEFILKDARWGHAEGGPYDVIFFGAGT--------TEVSKTILSQLKPNGRIVAPVG 235 (364)
Q Consensus 184 ------~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~--------~~l~~~l~~~LkpGG~Lvi~~~ 235 (364)
...|.|...|.....+..+.||+|+|-.++ ..+++.++..|+|||.|++--.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 135778888877655334679999987665 3588999999999999996443
No 223
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.03 E-value=7.8e-05 Score=71.99 Aligned_cols=110 Identities=12% Similarity=0.141 Sum_probs=75.8
Q ss_pred HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEE--EE
Q psy7830 122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEF--IL 191 (364)
Q Consensus 122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~--~~ 191 (364)
......+...+.++..++|+|||+|..+..+... +++++|+|.++++.+.+++... ..+.+++ ++
T Consensus 64 ~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~-----~~p~l~v~~l~ 138 (319)
T TIGR03439 64 KKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG-----NFSHVRCAGLL 138 (319)
T ss_pred HHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc-----cCCCeEEEEEE
Confidence 3444444445678889999999999998766554 6999999999999999998731 1245555 78
Q ss_pred cCCCCC---CCC---CCCeeEEEEcc-Ch--------HHHHHHHHh-ccCCCcEEEEEEcC
Q psy7830 192 KDARWG---HAE---GGPYDVIFFGA-GT--------TEVSKTILS-QLKPNGRIVAPVGN 236 (364)
Q Consensus 192 ~D~~~~---~~~---~~~fD~Ii~~~-~~--------~~l~~~l~~-~LkpGG~Lvi~~~~ 236 (364)
+|..+. .+. .....+|+.-+ .+ ..++..+++ .|+|||.|++.+..
T Consensus 139 gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~ 199 (319)
T TIGR03439 139 GTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDG 199 (319)
T ss_pred ecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCC
Confidence 876543 111 12355664322 21 136788888 99999999987743
No 224
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.01 E-value=6e-05 Score=68.37 Aligned_cols=110 Identities=23% Similarity=0.251 Sum_probs=75.6
Q ss_pred HHHHHHHHHHh-ccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830 119 SYIARCLEQLV-DHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK 192 (364)
Q Consensus 119 ~~~a~~l~~L~-~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~ 192 (364)
.+.+.++.-+. -++++|.+||-+|+++|....+++.. .|++||.++...+..-.-+++. +||--+..
T Consensus 57 KLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-------~NIiPIl~ 129 (229)
T PF01269_consen 57 KLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-------PNIIPILE 129 (229)
T ss_dssp HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-------TTEEEEES
T ss_pred HHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-------Cceeeeec
Confidence 45555555443 23689999999999999999888876 8999999996655554444331 48999999
Q ss_pred CCCCCCC---CCCCeeEEEEccChH----HHHHHHHhccCCCcEEEEEEc
Q psy7830 193 DARWGHA---EGGPYDVIFFGAGTT----EVSKTILSQLKPNGRIVAPVG 235 (364)
Q Consensus 193 D~~~~~~---~~~~fD~Ii~~~~~~----~l~~~l~~~LkpGG~Lvi~~~ 235 (364)
|+..... --+..|+|+++.+-+ -+..++...||+||.+++.+-
T Consensus 130 DAr~P~~Y~~lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 130 DARHPEKYRMLVEMVDVIFQDVAQPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp -TTSGGGGTTTS--EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCChHHhhcccccccEEEecCCChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 9875321 125799999986543 356788889999999998873
No 225
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.99 E-value=1.5e-05 Score=70.47 Aligned_cols=100 Identities=22% Similarity=0.184 Sum_probs=62.7
Q ss_pred HHHHHHHhccC--CC--CCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830 122 ARCLEQLVDHL--QN--GSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK 192 (364)
Q Consensus 122 a~~l~~L~~~l--~~--g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~ 192 (364)
-++.+.+..+- .+ +.+|||+||++|+++..+.+. +|+|+|+.+. .. ..++.++.+
T Consensus 7 ~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~-------~~~~~~i~~ 70 (181)
T PF01728_consen 7 FKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DP-------LQNVSFIQG 70 (181)
T ss_dssp HHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS--------TTEEBTTG
T ss_pred HHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc---------cc-------ccceeeeec
Confidence 34555554332 34 489999999999999999877 9999999876 10 134555555
Q ss_pred CCCCC---------CC-CCCCeeEEEEccChH-----------H------HHHHHHhccCCCcEEEEEEcCC
Q psy7830 193 DARWG---------HA-EGGPYDVIFFGAGTT-----------E------VSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 193 D~~~~---------~~-~~~~fD~Ii~~~~~~-----------~------l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
|+... .. ...+||+|+++.... . .+..+.+.|++||.+|+-+-..
T Consensus 71 d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~ 142 (181)
T PF01728_consen 71 DITNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG 142 (181)
T ss_dssp GGEEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred ccchhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence 54321 11 125899999988321 1 2245567899999999877553
No 226
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.98 E-value=0.00017 Score=67.80 Aligned_cols=100 Identities=16% Similarity=0.065 Sum_probs=76.4
Q ss_pred CCCEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEcCCCCCC---CCCCC
Q psy7830 134 NGSRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILKDARWGH---AEGGP 203 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~D~~~~~---~~~~~ 203 (364)
..-+||||.||.|.....+... +|...|.++..++..++.++. .+..++ +|.++|+.+.. .-...
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~-----~gL~~i~~f~~~dAfd~~~l~~l~p~ 209 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAE-----RGLEDIARFEQGDAFDRDSLAALDPA 209 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHH-----cCCccceEEEecCCCCHhHhhccCCC
Confidence 4468999999999877666544 899999999999999999988 234565 99999987642 11235
Q ss_pred eeEEEEccChHH---------HHHHHHhccCCCcEEEEEEcCCC
Q psy7830 204 YDVIFFGAGTTE---------VSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 204 fD~Ii~~~~~~~---------l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
.+++++...++- .+..+.+.+.|||+||.+-.+..
T Consensus 210 P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwH 253 (311)
T PF12147_consen 210 PTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWH 253 (311)
T ss_pred CCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCC
Confidence 789888776642 35678889999999998765543
No 227
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=7.2e-05 Score=67.31 Aligned_cols=101 Identities=24% Similarity=0.235 Sum_probs=73.5
Q ss_pred HHHHHHHhc--cCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC
Q psy7830 122 ARCLEQLVD--HLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA 194 (364)
Q Consensus 122 a~~l~~L~~--~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~ 194 (364)
-++++...+ .+++++.|+|+||.+|..+..+++. .|+++|+.|-.. .++|.++++|+
T Consensus 31 ~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----------------~~~V~~iq~d~ 94 (205)
T COG0293 31 YKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----------------IPGVIFLQGDI 94 (205)
T ss_pred HHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----------------CCCceEEeeec
Confidence 344444433 3578999999999999999999887 599999986421 25799999998
Q ss_pred CCCCC--------CCCCeeEEEEccCh--------HH---------HHHHHHhccCCCcEEEEEEcCCC
Q psy7830 195 RWGHA--------EGGPYDVIFFGAGT--------TE---------VSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 195 ~~~~~--------~~~~fD~Ii~~~~~--------~~---------l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
+.... ...++|+|+++..- .+ .+.-....|+|||.+++.+-..+
T Consensus 95 ~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~ 163 (205)
T COG0293 95 TDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE 163 (205)
T ss_pred cCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC
Confidence 75321 12357999987654 12 34566779999999999885544
No 228
>KOG3045|consensus
Probab=97.92 E-value=4.5e-05 Score=70.25 Aligned_cols=94 Identities=18% Similarity=0.144 Sum_probs=71.9
Q ss_pred HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC
Q psy7830 121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA 199 (364)
Q Consensus 121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~ 199 (364)
+..++++|.. ......|-|+|||-+.++. ... .|++.|+.+ .|-+++.+|+...+.
T Consensus 168 ld~ii~~ik~-r~~~~vIaD~GCGEakiA~--~~~~kV~SfDL~a--------------------~~~~V~~cDm~~vPl 224 (325)
T KOG3045|consen 168 LDVIIRKIKR-RPKNIVIADFGCGEAKIAS--SERHKVHSFDLVA--------------------VNERVIACDMRNVPL 224 (325)
T ss_pred HHHHHHHHHh-CcCceEEEecccchhhhhh--ccccceeeeeeec--------------------CCCceeeccccCCcC
Confidence 3667777763 3445678899999998876 233 999999742 255678899999888
Q ss_pred CCCCeeEEEEccCh-----HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830 200 EGGPYDVIFFGAGT-----TEVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 200 ~~~~fD~Ii~~~~~-----~~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
++++.|+++...++ ..++.++.+.|++||.+.+..-..
T Consensus 225 ~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~S 267 (325)
T KOG3045|consen 225 EDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKS 267 (325)
T ss_pred ccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhh
Confidence 88999998765544 457899999999999999877554
No 229
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.89 E-value=1.7e-05 Score=79.51 Aligned_cols=92 Identities=13% Similarity=0.091 Sum_probs=60.7
Q ss_pred EEEEECCCccHHHHHHHcceEEEE-----eCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEcc
Q psy7830 137 RVLDIGSGQGYMATAKEWLSSVRQ-----LLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGA 211 (364)
Q Consensus 137 ~VLDiGcGsG~~a~~la~~~V~~v-----Dis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~ 211 (364)
.+||+|||+|.++..|..+.|+.+ |..+..++.|-++ + .+.+--+.+ ...+++.+..||+|+|..
T Consensus 120 ~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleR---G------vpa~~~~~~-s~rLPfp~~~fDmvHcsr 189 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALER---G------VPAMIGVLG-SQRLPFPSNAFDMVHCSR 189 (506)
T ss_pred EEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhc---C------cchhhhhhc-cccccCCccchhhhhccc
Confidence 579999999999999999833333 4444555555443 1 111111111 234566678999998765
Q ss_pred ChH-H------HHHHHHhccCCCcEEEEEEcCCC
Q psy7830 212 GTT-E------VSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 212 ~~~-~------l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
... + ++-++-++|+|||+++.+..+..
T Consensus 190 c~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 190 CLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred ccccchhcccceeehhhhhhccCceEEecCCccc
Confidence 442 2 45688999999999999887643
No 230
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.87 E-value=0.00012 Score=62.27 Aligned_cols=98 Identities=22% Similarity=0.276 Sum_probs=64.6
Q ss_pred CCCCEEEEECCCccHHHHHHHc-----c---eEEEEeCCHHHHHHHHHHHHhcCCCCCCC-CCEEEEEcCCCCCCCCCCC
Q psy7830 133 QNGSRVLDIGSGQGYMATAKEW-----L---SSVRQLLLPETLNNSLKNIKISRPDLLQS-KTLEFILKDARWGHAEGGP 203 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la~-----~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~-~~v~~~~~D~~~~~~~~~~ 203 (364)
.+...|+|+|||.|+++..++. . +|+++|.++..++.+.++.+... ... .++.+..++...... ...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~ 99 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG---SDLEKRLSFIQGDIADESS-SDP 99 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc---chhhccchhhccchhhhcc-cCC
Confidence 5678999999999999999998 4 99999999999999998887711 011 456666666543322 345
Q ss_pred eeEEEEccChHHHHHHHHh-ccCCCcEEEEEE
Q psy7830 204 YDVIFFGAGTTEVSKTILS-QLKPNGRIVAPV 234 (364)
Q Consensus 204 fD~Ii~~~~~~~l~~~l~~-~LkpGG~Lvi~~ 234 (364)
.++++.--.+..+...+.+ .++++-..++.+
T Consensus 100 ~~~~vgLHaCG~Ls~~~l~~~~~~~~~~l~~v 131 (141)
T PF13679_consen 100 PDILVGLHACGDLSDRALRLFIRPNARFLVLV 131 (141)
T ss_pred CeEEEEeecccchHHHHHHHHHHcCCCEEEEc
Confidence 6777765555444332222 223554444433
No 231
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.84 E-value=0.00013 Score=66.09 Aligned_cols=95 Identities=21% Similarity=0.222 Sum_probs=63.8
Q ss_pred EEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccCh
Q psy7830 138 VLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGT 213 (364)
Q Consensus 138 VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~ 213 (364)
|.||||--|++.+.|.+. +++++|+++.-++.|++++.... + .+++++..+|........+..|.|+..++-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~---l-~~~i~~rlgdGL~~l~~~e~~d~ivIAGMG 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG---L-EDRIEVRLGDGLEVLKPGEDVDTIVIAGMG 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-----TTTEEEEE-SGGGG--GGG---EEEEEEE-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC---C-cccEEEEECCcccccCCCCCCCEEEEecCC
Confidence 689999999999999988 89999999999999999999822 2 358999999987655443347877654433
Q ss_pred H----HHHHHHHhccCCCcEEEEEEcC
Q psy7830 214 T----EVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 214 ~----~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
. .+++.....++....|++.-..
T Consensus 77 G~lI~~ILe~~~~~~~~~~~lILqP~~ 103 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSSAKRLILQPNT 103 (205)
T ss_dssp HHHHHHHHHHTGGGGTT--EEEEEESS
T ss_pred HHHHHHHHHhhHHHhccCCeEEEeCCC
Confidence 2 3445555556555567765544
No 232
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.72 E-value=0.00056 Score=55.68 Aligned_cols=96 Identities=26% Similarity=0.225 Sum_probs=66.4
Q ss_pred EEEECCCccHHH--HHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC--CCCCC-CCeeEEEEc
Q psy7830 138 VLDIGSGQGYMA--TAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW--GHAEG-GPYDVIFFG 210 (364)
Q Consensus 138 VLDiGcGsG~~a--~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~--~~~~~-~~fD~Ii~~ 210 (364)
++|+|||+|..+ ..+... .++++|+++.++..++..... . ....+.+...|... ..... ..||++.+.
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-A----GLGLVDFVVADALGGVLPFEDSASFDLVISL 126 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c----CCCceEEEEeccccCCCCCCCCCceeEEeee
Confidence 999999999854 222222 688899999999985554422 1 00116788888765 34433 379999444
Q ss_pred cCh-----HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830 211 AGT-----TEVSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 211 ~~~-----~~l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
... ......+.+.++|+|.+++......
T Consensus 127 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 127 LVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred eehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 443 5677899999999999998887643
No 233
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.71 E-value=1.5e-05 Score=64.11 Aligned_cols=90 Identities=28% Similarity=0.313 Sum_probs=39.8
Q ss_pred EEECCCccHHHHHHHcc-------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC--CCCeeEEEE
Q psy7830 139 LDIGSGQGYMATAKEWL-------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE--GGPYDVIFF 209 (364)
Q Consensus 139 LDiGcGsG~~a~~la~~-------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~--~~~fD~Ii~ 209 (364)
||+|+..|..+..+++. +++++|..+. .+..++.+++.. + ..+++++.++..+.... .++||+|+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~---~-~~~~~~~~g~s~~~l~~~~~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAG---L-SDRVEFIQGDSPDFLPSLPDGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS-------------GG---G--BTEEEEES-THHHHHHHHH--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcC---C-CCeEEEEEcCcHHHHHHcCCCCEEEEEE
Confidence 68999999999888865 5899999996 333333333210 1 24799999998654221 368999999
Q ss_pred ccCh--H---HHHHHHHhccCCCcEEEEE
Q psy7830 210 GAGT--T---EVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 210 ~~~~--~---~l~~~l~~~LkpGG~Lvi~ 233 (364)
+..- + .-++.+.+.|+|||++++-
T Consensus 76 Dg~H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 76 DGDHSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ES---HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 8862 2 3467888999999999873
No 234
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.71 E-value=0.00015 Score=69.91 Aligned_cols=84 Identities=14% Similarity=0.064 Sum_probs=63.4
Q ss_pred CCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830 132 LQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF 209 (364)
Q Consensus 132 l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~ 209 (364)
+.+|+++||+||++|.+|..+.+. +|++||..+- - ..+. ..++|.....|.....+..+.+|.+++
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l-~----~~L~-------~~~~V~h~~~d~fr~~p~~~~vDwvVc 276 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPM-A----QSLM-------DTGQVEHLRADGFKFRPPRKNVDWLVC 276 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhc-C----Hhhh-------CCCCEEEEeccCcccCCCCCCCCEEEE
Confidence 368999999999999999999998 9999996542 1 2222 236899999998776544568999999
Q ss_pred ccChH--HHHHHHHhccCCC
Q psy7830 210 GAGTT--EVSKTILSQLKPN 227 (364)
Q Consensus 210 ~~~~~--~l~~~l~~~LkpG 227 (364)
+.... .+...+.+.|..|
T Consensus 277 Dmve~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 277 DMVEKPARVAELMAQWLVNG 296 (357)
T ss_pred ecccCHHHHHHHHHHHHhcC
Confidence 98763 4556666666554
No 235
>PRK10742 putative methyltransferase; Provisional
Probab=97.68 E-value=0.00012 Score=67.67 Aligned_cols=90 Identities=10% Similarity=0.010 Sum_probs=69.9
Q ss_pred HHHHHhccCCCCC--EEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHh-cCCCCCCC---CCEEEEEcCCC
Q psy7830 124 CLEQLVDHLQNGS--RVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKI-SRPDLLQS---KTLEFILKDAR 195 (364)
Q Consensus 124 ~l~~L~~~l~~g~--~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~-~~~~~l~~---~~v~~~~~D~~ 195 (364)
+++.+. +++|. +|||+-+|+|..++.++.+ +|+++|.++.+....++++++ .....++. .+++++.+|..
T Consensus 78 l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~ 155 (250)
T PRK10742 78 VAKAVG--IKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL 155 (250)
T ss_pred HHHHhC--CCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHH
Confidence 344444 67888 9999999999999999998 999999999999999999887 21111122 47899999987
Q ss_pred CCCCC-CCCeeEEEEccChHH
Q psy7830 196 WGHAE-GGPYDVIFFGAGTTE 215 (364)
Q Consensus 196 ~~~~~-~~~fD~Ii~~~~~~~ 215 (364)
..... ...||+|+.+.++++
T Consensus 156 ~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 156 TALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred HHHhhCCCCCcEEEECCCCCC
Confidence 65432 247999999988865
No 236
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.00063 Score=60.73 Aligned_cols=130 Identities=18% Similarity=0.174 Sum_probs=91.3
Q ss_pred ccccCCCceecCC-C---ccChHHHHHHHHHHHhc-cCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHH
Q psy7830 100 FGFCDIPYAFANQ-V---VMEPPSYIARCLEQLVD-HLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNS 170 (364)
Q Consensus 100 ~~y~d~~l~ig~g-~---~~s~P~~~a~~l~~L~~-~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a 170 (364)
..|.+.-+.++.+ . .+-+..+.+.++.-|.. .+++|.+||=+|+.+|....+++.. .+++||.++......
T Consensus 37 ~VYGE~ii~~~~~eYR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reL 116 (231)
T COG1889 37 RVYGERIIKVEGEEYREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMREL 116 (231)
T ss_pred cccCceeEEecCcceeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHH
Confidence 3566555555543 1 12223355666665542 3679999999999999999998887 899999999887766
Q ss_pred HHHHHhcCCCCCCCCCEEEEEcCCCCCCC---CCCCeeEEEEccChHH----HHHHHHhccCCCcEEEEEEcC
Q psy7830 171 LKNIKISRPDLLQSKTLEFILKDARWGHA---EGGPYDVIFFGAGTTE----VSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 171 ~~~~~~~~~~~l~~~~v~~~~~D~~~~~~---~~~~fD~Ii~~~~~~~----l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
-.-+++. +|+--+.+|+..... --+..|+|+.+.+-+. +..++...||+||.+++.+-.
T Consensus 117 l~~a~~R-------~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKA 182 (231)
T COG1889 117 LDVAEKR-------PNIIPILEDARKPEKYRHLVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVIAIKA 182 (231)
T ss_pred HHHHHhC-------CCceeeecccCCcHHhhhhcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEEEEEe
Confidence 5555442 488889999875321 0146899998766542 567888999999988887744
No 237
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.00097 Score=61.07 Aligned_cols=95 Identities=22% Similarity=0.169 Sum_probs=67.9
Q ss_pred CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEE-EEcCCCCCCCC--CCCeeE
Q psy7830 133 QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEF-ILKDARWGHAE--GGPYDV 206 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~-~~~D~~~~~~~--~~~fD~ 206 (364)
.+|..+||+|+-||.+|..+.+. +|+|+|..-..+..--++ .+++.. ...|++...++ .+..|+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~----------d~rV~~~E~tN~r~l~~~~~~~~~d~ 147 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN----------DPRVIVLERTNVRYLTPEDFTEKPDL 147 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc----------CCcEEEEecCChhhCCHHHcccCCCe
Confidence 57899999999999999999888 999999986544432221 134433 33455543322 235788
Q ss_pred EEEccCh---HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830 207 IFFGAGT---TEVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 207 Ii~~~~~---~~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
|+++.++ ..+++.+...++++|.++.-+-+.
T Consensus 148 ~v~DvSFISL~~iLp~l~~l~~~~~~~v~LvKPQ 181 (245)
T COG1189 148 IVIDVSFISLKLILPALLLLLKDGGDLVLLVKPQ 181 (245)
T ss_pred EEEEeehhhHHHHHHHHHHhcCCCceEEEEecch
Confidence 8877665 457899999999999999877653
No 238
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.56 E-value=0.00044 Score=62.58 Aligned_cols=101 Identities=23% Similarity=0.316 Sum_probs=74.4
Q ss_pred HhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCC
Q psy7830 128 LVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGP 203 (364)
Q Consensus 128 L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~ 203 (364)
+...++.+.++.|+||--+|+...+.+. .+++.|+++..++.|.+++.++. + .+++++..+|.......+..
T Consensus 10 va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~---l-~~~i~vr~~dgl~~l~~~d~ 85 (226)
T COG2384 10 VANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN---L-SERIDVRLGDGLAVLELEDE 85 (226)
T ss_pred HHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC---C-cceEEEeccCCccccCccCC
Confidence 3334567888999999999999999887 89999999999999999998833 2 36899999998765554557
Q ss_pred eeEEEEccChH----HHHHHHHhccCCCcEEEE
Q psy7830 204 YDVIFFGAGTT----EVSKTILSQLKPNGRIVA 232 (364)
Q Consensus 204 fD~Ii~~~~~~----~l~~~l~~~LkpGG~Lvi 232 (364)
+|+|+..++-. .++++-.+.|+.=-++++
T Consensus 86 ~d~ivIAGMGG~lI~~ILee~~~~l~~~~rlIL 118 (226)
T COG2384 86 IDVIVIAGMGGTLIREILEEGKEKLKGVERLIL 118 (226)
T ss_pred cCEEEEeCCcHHHHHHHHHHhhhhhcCcceEEE
Confidence 89886655433 344444444443334554
No 239
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.55 E-value=0.0011 Score=62.62 Aligned_cols=97 Identities=25% Similarity=0.244 Sum_probs=62.4
Q ss_pred CEEEEECCCccHHH-HHHHcc-----eEEEEeCCHHHHHHHHHHHHh-cCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830 136 SRVLDIGSGQGYMA-TAKEWL-----SSVRQLLLPETLNNSLKNIKI-SRPDLLQSKTLEFILKDARWGHAEGGPYDVIF 208 (364)
Q Consensus 136 ~~VLDiGcGsG~~a-~~la~~-----~V~~vDis~~~l~~a~~~~~~-~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii 208 (364)
.+|+=||||+=-+| +.+++. .|+++|+|+++++.+++-+.. .. + ..++.|+++|......+...||+|+
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~---L-~~~m~f~~~d~~~~~~dl~~~DvV~ 197 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG---L-SKRMSFITADVLDVTYDLKEYDVVF 197 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H---H--SSEEEEES-GGGG-GG----SEEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc---c-cCCeEEEecchhccccccccCCEEE
Confidence 59999999987666 444433 689999999999999987762 11 2 2579999999876554446899998
Q ss_pred EccChH-------HHHHHHHhccCCCcEEEEEEcC
Q psy7830 209 FGAGTT-------EVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 209 ~~~~~~-------~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
...... .++..+.+.++||..+++....
T Consensus 198 lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~ 232 (276)
T PF03059_consen 198 LAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAH 232 (276)
T ss_dssp E-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--
T ss_pred EhhhcccccchHHHHHHHHHhhCCCCcEEEEecch
Confidence 766553 5899999999999999987544
No 240
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.53 E-value=0.00031 Score=67.28 Aligned_cols=88 Identities=22% Similarity=0.171 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC
Q psy7830 118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD 193 (364)
Q Consensus 118 P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D 193 (364)
|-+...+++.|. ++++..++|.--|.|+.+..+++. +|+|+|.|+.+++.+++++.. . .+++.++.++
T Consensus 6 PVll~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~-----~-~~r~~~~~~~ 77 (310)
T PF01795_consen 6 PVLLKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKK-----F-DDRFIFIHGN 77 (310)
T ss_dssp -TTHHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCC-----C-CTTEEEEES-
T ss_pred cccHHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhh-----c-cceEEEEecc
Confidence 557889999998 788999999999999999999876 999999999999999988765 1 2589999988
Q ss_pred CCCCC-----C-CCCCeeEEEEccCh
Q psy7830 194 ARWGH-----A-EGGPYDVIFFGAGT 213 (364)
Q Consensus 194 ~~~~~-----~-~~~~fD~Ii~~~~~ 213 (364)
..++. . ....+|-|+++..+
T Consensus 78 F~~l~~~l~~~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 78 FSNLDEYLKELNGINKVDGILFDLGV 103 (310)
T ss_dssp GGGHHHHHHHTTTTS-EEEEEEE-S-
T ss_pred HHHHHHHHHHccCCCccCEEEEcccc
Confidence 76432 1 22479999876443
No 241
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.47 E-value=0.00069 Score=64.19 Aligned_cols=96 Identities=18% Similarity=0.165 Sum_probs=57.8
Q ss_pred CCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830 134 NGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF 208 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii 208 (364)
...+|||+|||+|..+.++... +++++|.|+.|++.++.-+.... ........ .+......+..+.|+|+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~----~~~~~~~~-~~~~~~~~~~~~~DLvi 107 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP----NNRNAEWR-RVLYRDFLPFPPDDLVI 107 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc----ccccchhh-hhhhcccccCCCCcEEE
Confidence 3468999999999876655543 89999999999999988765511 00111111 11110011123449999
Q ss_pred EccChHH--------HHHHHHhccCCCcEEEEEEcC
Q psy7830 209 FGAGTTE--------VSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 209 ~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
+...+.+ +.+.+.+.+++ .||+....
T Consensus 108 ~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpG 141 (274)
T PF09243_consen 108 ASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPG 141 (274)
T ss_pred EehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCC
Confidence 8777654 34455555544 66665544
No 242
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.45 E-value=0.00039 Score=58.63 Aligned_cols=54 Identities=15% Similarity=0.168 Sum_probs=45.6
Q ss_pred EEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC
Q psy7830 137 RVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR 195 (364)
Q Consensus 137 ~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~ 195 (364)
.|||+|||.|..+..+++. +|+++|.++.+++.+++++..+. .+++.++...+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~-----~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN-----LPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC-----CCcEEEEEeeee
Confidence 3899999999999998877 69999999999999999988733 346888776654
No 243
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.43 E-value=0.0011 Score=61.89 Aligned_cols=104 Identities=17% Similarity=0.138 Sum_probs=64.3
Q ss_pred CCCCEEEEECCCccHHHHHHH-cc--eEEEEeCCHHHHHHHHHHHHhc-C-CC---------CCCC------------CC
Q psy7830 133 QNGSRVLDIGSGQGYMATAKE-WL--SSVRQLLLPETLNNSLKNIKIS-R-PD---------LLQS------------KT 186 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la-~~--~V~~vDis~~~l~~a~~~~~~~-~-~~---------~l~~------------~~ 186 (364)
..|.++||||||+-..-..-+ .. +|+..|..+...+..++-++.. . .+ .-+. ..
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 357799999999965533222 33 8999999999988776654331 0 00 0000 12
Q ss_pred E-EEEEcCCCCCCCCC------CCeeEEEEccChHH----------HHHHHHhccCCCcEEEEEEcC
Q psy7830 187 L-EFILKDARWGHAEG------GPYDVIFFGAGTTE----------VSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 187 v-~~~~~D~~~~~~~~------~~fD~Ii~~~~~~~----------l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
| +++.+|+....+-. .+||+|++...++. .++++.++|||||.|++...-
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l 201 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVL 201 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence 3 36778887644321 24999998777653 568999999999999986643
No 244
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.43 E-value=0.00099 Score=63.05 Aligned_cols=85 Identities=14% Similarity=0.051 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830 118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK 192 (364)
Q Consensus 118 P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~ 192 (364)
|-+...+++.|. ++++...+|.--|.|+.+..+... +++++|.|+.+++.|++++.... +++.++..
T Consensus 9 pVLl~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~------~r~~~v~~ 80 (314)
T COG0275 9 PVLLNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD------GRVTLVHG 80 (314)
T ss_pred chHHHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC------CcEEEEeC
Confidence 557888999988 788999999999999999888876 79999999999999999987621 48888888
Q ss_pred CCCCCCC-----CCCCeeEEEEc
Q psy7830 193 DARWGHA-----EGGPYDVIFFG 210 (364)
Q Consensus 193 D~~~~~~-----~~~~fD~Ii~~ 210 (364)
+..++.. .-+++|-|+.+
T Consensus 81 ~F~~l~~~l~~~~i~~vDGiL~D 103 (314)
T COG0275 81 NFANLAEALKELGIGKVDGILLD 103 (314)
T ss_pred cHHHHHHHHHhcCCCceeEEEEe
Confidence 7543221 12467777654
No 245
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.40 E-value=0.0014 Score=62.57 Aligned_cols=77 Identities=21% Similarity=0.247 Sum_probs=46.2
Q ss_pred CCEEEEECCCccHH-HHHHHcc---eEEEEeCCHHHHHHHHHHHHhc-CCCCCCCCCEEEEEcCC----CCCC-CCCCCe
Q psy7830 135 GSRVLDIGSGQGYM-ATAKEWL---SSVRQLLLPETLNNSLKNIKIS-RPDLLQSKTLEFILKDA----RWGH-AEGGPY 204 (364)
Q Consensus 135 g~~VLDiGcGsG~~-a~~la~~---~V~~vDis~~~l~~a~~~~~~~-~~~~l~~~~v~~~~~D~----~~~~-~~~~~f 204 (364)
.-++||||||...+ .+..++. +++|+|+|+..++.|++|+++| . +. .+|+++...- .... ...+.|
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~---L~-~~I~l~~~~~~~~i~~~i~~~~e~~ 178 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPN---LE-SRIELRKQKNPDNIFDGIIQPNERF 178 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T----T-TTEEEEE--ST-SSTTTSTT--S-E
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccc---cc-cceEEEEcCCccccchhhhccccee
Confidence 45799999998744 4444443 9999999999999999999986 4 32 4788875532 2211 123579
Q ss_pred eEEEEccChHH
Q psy7830 205 DVIFFGAGTTE 215 (364)
Q Consensus 205 D~Ii~~~~~~~ 215 (364)
|+++||.++..
T Consensus 179 dftmCNPPFy~ 189 (299)
T PF05971_consen 179 DFTMCNPPFYS 189 (299)
T ss_dssp EEEEE-----S
T ss_pred eEEecCCcccc
Confidence 99999999864
No 246
>KOG1269|consensus
Probab=97.27 E-value=0.00055 Score=67.24 Aligned_cols=107 Identities=21% Similarity=0.173 Sum_probs=80.2
Q ss_pred HHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCC
Q psy7830 125 LEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEG 201 (364)
Q Consensus 125 l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~ 201 (364)
+..+.....++..++|+|||-|.....++.. .++++|.++.-+..+........ +. .+-.++.+|+...++++
T Consensus 101 ~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~---l~-~k~~~~~~~~~~~~fed 176 (364)
T KOG1269|consen 101 IVALRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAY---LD-NKCNFVVADFGKMPFED 176 (364)
T ss_pred hHHHhhcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHH---hh-hhcceehhhhhcCCCCc
Confidence 3444444678889999999999999888876 89999999888777766544311 11 12334888988888888
Q ss_pred CCeeEEEEccChH------HHHHHHHhccCCCcEEEEEEc
Q psy7830 202 GPYDVIFFGAGTT------EVSKTILSQLKPNGRIVAPVG 235 (364)
Q Consensus 202 ~~fD~Ii~~~~~~------~l~~~l~~~LkpGG~Lvi~~~ 235 (364)
..||.+.+..... .+..++.+.++|||+.+....
T Consensus 177 n~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 177 NTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred cccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence 9999997765554 367899999999999987553
No 247
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.26 E-value=0.003 Score=64.74 Aligned_cols=120 Identities=17% Similarity=0.153 Sum_probs=86.0
Q ss_pred CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--------eEEEEeCCHHHHHHHHHHHHhcCCCCCC
Q psy7830 112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--------SSVRQLLLPETLNNSLKNIKISRPDLLQ 183 (364)
Q Consensus 112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--------~V~~vDis~~~l~~a~~~~~~~~~~~l~ 183 (364)
|.+.+...++..+.+.+. +.+..+|+|..||+|.+.....+. .++|.|+++.....|+.|+--+. +.
T Consensus 166 GEfyTP~~v~~liv~~l~--~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhg---i~ 240 (489)
T COG0286 166 GEFYTPREVSELIVELLD--PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHG---IE 240 (489)
T ss_pred CccCChHHHHHHHHHHcC--CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhC---CC
Confidence 566666677777777776 467889999999999887665544 48999999999999999986622 21
Q ss_pred CCCEEEEEcCCCCCCC-----CCCCeeEEEEccChHH-------------------------------HHHHHHhccCCC
Q psy7830 184 SKTLEFILKDARWGHA-----EGGPYDVIFFGAGTTE-------------------------------VSKTILSQLKPN 227 (364)
Q Consensus 184 ~~~v~~~~~D~~~~~~-----~~~~fD~Ii~~~~~~~-------------------------------l~~~l~~~LkpG 227 (364)
. ++....+|....+. ..+.||.|++|.++.. ....+...|+||
T Consensus 241 ~-~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~ 319 (489)
T COG0286 241 G-DANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPG 319 (489)
T ss_pred c-cccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCC
Confidence 1 34555555443321 2357999999887730 236888999999
Q ss_pred cEEEEEEcCC
Q psy7830 228 GRIVAPVGNV 237 (364)
Q Consensus 228 G~Lvi~~~~~ 237 (364)
|+..+.+...
T Consensus 320 g~aaivl~~g 329 (489)
T COG0286 320 GRAAIVLPDG 329 (489)
T ss_pred ceEEEEecCC
Confidence 8777766554
No 248
>KOG1331|consensus
Probab=97.24 E-value=0.0003 Score=65.87 Aligned_cols=92 Identities=21% Similarity=0.145 Sum_probs=71.9
Q ss_pred CCCCCEEEEECCCccHHHHHHHcc-eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEcCCCCCCCCCCCeeEEEE
Q psy7830 132 LQNGSRVLDIGSGQGYMATAKEWL-SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILKDARWGHAEGGPYDVIFF 209 (364)
Q Consensus 132 l~~g~~VLDiGcGsG~~a~~la~~-~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~D~~~~~~~~~~fD~Ii~ 209 (364)
...|..++|+|||.|-....- .. .++++|++...+..+++. +. ....+|+...+..+.+||.+++
T Consensus 43 ~~~gsv~~d~gCGngky~~~~-p~~~~ig~D~c~~l~~~ak~~------------~~~~~~~ad~l~~p~~~~s~d~~ls 109 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLGVN-PLCLIIGCDLCTGLLGGAKRS------------GGDNVCRADALKLPFREESFDAALS 109 (293)
T ss_pred cCCcceeeecccCCcccCcCC-CcceeeecchhhhhccccccC------------CCceeehhhhhcCCCCCCccccchh
Confidence 345889999999999654321 12 789999998888776642 22 5788999998888889999999
Q ss_pred ccChHH---------HHHHHHhccCCCcEEEEEEcC
Q psy7830 210 GAGTTE---------VSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 210 ~~~~~~---------l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
....+| +++++.+.|+|||...+.+..
T Consensus 110 iavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 110 IAVIHHLSTRERRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEeh
Confidence 888887 457899999999997776644
No 249
>KOG2730|consensus
Probab=97.24 E-value=0.00037 Score=62.88 Aligned_cols=74 Identities=16% Similarity=0.148 Sum_probs=57.6
Q ss_pred CCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHh-cCCCCCCCCCEEEEEcCCCCCCC----CCCCeeE
Q psy7830 134 NGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKI-SRPDLLQSKTLEFILKDARWGHA----EGGPYDV 206 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~-~~~~~l~~~~v~~~~~D~~~~~~----~~~~fD~ 206 (364)
....|+|.-||-|+.++..+.. .|+++|+||..+..|+.|++- +. . ++|+|++||..+... ....+|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI----~-~rItFI~GD~ld~~~~lq~~K~~~~~ 168 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGV----P-DRITFICGDFLDLASKLKADKIKYDC 168 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecC----C-ceeEEEechHHHHHHHHhhhhheeee
Confidence 4567999999999999888877 999999999999999999988 32 2 489999999875432 1233667
Q ss_pred EEEccC
Q psy7830 207 IFFGAG 212 (364)
Q Consensus 207 Ii~~~~ 212 (364)
|+...+
T Consensus 169 vf~spp 174 (263)
T KOG2730|consen 169 VFLSPP 174 (263)
T ss_pred eecCCC
Confidence 765544
No 250
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.23 E-value=0.0013 Score=63.73 Aligned_cols=93 Identities=22% Similarity=0.128 Sum_probs=67.7
Q ss_pred CCCCCEEEEECCC-ccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc-CCCCCCCCCCCeeE
Q psy7830 132 LQNGSRVLDIGSG-QGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK-DARWGHAEGGPYDV 206 (364)
Q Consensus 132 l~~g~~VLDiGcG-sG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~-D~~~~~~~~~~fD~ 206 (364)
++||++|+-+|+| -|.+++.+++. +|+++|.+++..+.|++-- .+ .++.. |......-.+.||+
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lG---------Ad--~~i~~~~~~~~~~~~~~~d~ 232 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLG---------AD--HVINSSDSDALEAVKEIADA 232 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhC---------Cc--EEEEcCCchhhHHhHhhCcE
Confidence 6899999999988 34666777774 9999999999999998742 11 12221 22111111134999
Q ss_pred EEEccChHHHHHHHHhccCCCcEEEEEEcC
Q psy7830 207 IFFGAGTTEVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 207 Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
|+...+ ...+....+.|++||++++.-..
T Consensus 233 ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 233 IIDTVG-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EEECCC-hhhHHHHHHHHhcCCEEEEECCC
Confidence 999999 88899999999999999985444
No 251
>KOG3987|consensus
Probab=97.21 E-value=0.00017 Score=64.53 Aligned_cols=109 Identities=16% Similarity=0.066 Sum_probs=74.0
Q ss_pred ccChHHHHHHHHHHHhcc-CCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEE
Q psy7830 114 VMEPPSYIARCLEQLVDH-LQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFI 190 (364)
Q Consensus 114 ~~s~P~~~a~~l~~L~~~-l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~ 190 (364)
.+-++...++++..=.+. -+...++||+|+|.|-.+..++.. +|++.|.|..|....++. +..++
T Consensus 91 FifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk------------~ynVl 158 (288)
T KOG3987|consen 91 FIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK------------NYNVL 158 (288)
T ss_pred EEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc------------CCcee
Confidence 444555556655532111 123468999999999999999988 999999999998776552 22222
Q ss_pred EcCCCCCCCCCCCeeEEEEccChH------HHHHHHHhccCC-CcEEEEEEcC
Q psy7830 191 LKDARWGHAEGGPYDVIFFGAGTT------EVSKTILSQLKP-NGRIVAPVGN 236 (364)
Q Consensus 191 ~~D~~~~~~~~~~fD~Ii~~~~~~------~l~~~l~~~Lkp-GG~Lvi~~~~ 236 (364)
.. .+....+-+||+|.|-..+. .+++.++.+|+| +|++++..--
T Consensus 159 ~~--~ew~~t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVL 209 (288)
T KOG3987|consen 159 TE--IEWLQTDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVL 209 (288)
T ss_pred ee--hhhhhcCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEe
Confidence 21 11222345799998766654 378899999999 9988876643
No 252
>KOG1709|consensus
Probab=97.13 E-value=0.0041 Score=56.13 Aligned_cols=97 Identities=18% Similarity=0.185 Sum_probs=72.9
Q ss_pred CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC---CCCCCCCCCCeeE
Q psy7830 133 QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD---ARWGHAEGGPYDV 206 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D---~~~~~~~~~~fD~ 206 (364)
.+|.+||++|-|-|+....+.+. +=+.+|..|+.++..++..-. ...||..+.+- .....+ ++.||-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~------ek~nViil~g~WeDvl~~L~-d~~FDG 172 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWR------EKENVIILEGRWEDVLNTLP-DKHFDG 172 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccc------cccceEEEecchHhhhcccc-ccCcce
Confidence 67999999999999999888877 667799999999988876433 23577777764 333333 567999
Q ss_pred EEEccChH------HHHHHHHhccCCCcEEEEEEcC
Q psy7830 207 IFFGAGTT------EVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 207 Ii~~~~~~------~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
|+.+.-.+ ++.+.+.++|||+|++-+--+.
T Consensus 173 I~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~ 208 (271)
T KOG1709|consen 173 IYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGL 208 (271)
T ss_pred eEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCc
Confidence 98875532 3567899999999987664443
No 253
>KOG1596|consensus
Probab=97.07 E-value=0.0021 Score=58.88 Aligned_cols=95 Identities=24% Similarity=0.288 Sum_probs=71.6
Q ss_pred cCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHH----HHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC--
Q psy7830 131 HLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPE----TLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA-- 199 (364)
Q Consensus 131 ~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~----~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~-- 199 (364)
|++||.+||=+|+++|+...+.+.. .|++||.++. ++..|+++ .||--+.-|+.....
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-----------tNiiPIiEDArhP~KYR 221 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-----------TNIIPIIEDARHPAKYR 221 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-----------CCceeeeccCCCchhee
Confidence 4789999999999999998888877 8999999874 44444433 477778888865321
Q ss_pred -CCCCeeEEEEccChHH----HHHHHHhccCCCcEEEEEEcC
Q psy7830 200 -EGGPYDVIFFGAGTTE----VSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 200 -~~~~fD~Ii~~~~~~~----l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
.-+-.|+||++.+-+. +.-+..-.||+||.+++++-.
T Consensus 222 mlVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 222 MLVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred eeeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEEEec
Confidence 1145799998876543 344677889999999998854
No 254
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.02 E-value=0.023 Score=52.41 Aligned_cols=113 Identities=19% Similarity=0.029 Sum_probs=63.3
Q ss_pred HHHHHHHHHhccCCCCCEEEEECCCccHH-HHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830 120 YIARCLEQLVDHLQNGSRVLDIGSGQGYM-ATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW 196 (364)
Q Consensus 120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~-a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~ 196 (364)
++.+++-.+...--.|.+||=+|=..-.. +.++... +|+.+|+|+.+++..++.+++ .+. +|+.+..|...
T Consensus 30 ~~~Ra~~~~~~gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~-----~gl-~i~~~~~DlR~ 103 (243)
T PF01861_consen 30 TLRRAALMAERGDLEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEE-----EGL-PIEAVHYDLRD 103 (243)
T ss_dssp HHHHHHHHHHTT-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHH-----HT---EEEE---TTS
T ss_pred HHHHHHHHHhcCcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHH-----cCC-ceEEEEecccc
Confidence 33444333332224689999998554322 2333333 999999999999999999888 233 49999999988
Q ss_pred CCCCC--CCeeEEEEccChH-----HHHHHHHhccCCCc-EEEEEEcCCC
Q psy7830 197 GHAEG--GPYDVIFFGAGTT-----EVSKTILSQLKPNG-RIVAPVGNVW 238 (364)
Q Consensus 197 ~~~~~--~~fD~Ii~~~~~~-----~l~~~l~~~LkpGG-~Lvi~~~~~~ 238 (364)
..++. ++||+++.+.+.. -++......||..| ..+++.....
T Consensus 104 ~LP~~~~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~ 153 (243)
T PF01861_consen 104 PLPEELRGKFDVFFTDPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKE 153 (243)
T ss_dssp ---TTTSS-BSEEEE---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT
T ss_pred cCCHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCc
Confidence 76543 7899999998763 24566777777644 7777776654
No 255
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.02 E-value=0.0013 Score=65.06 Aligned_cols=100 Identities=18% Similarity=0.168 Sum_probs=72.9
Q ss_pred CCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC-CCCCeeEE
Q psy7830 134 NGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA-EGGPYDVI 207 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~-~~~~fD~I 207 (364)
.+-+|||.=+|+|.=++..+.. +|++-|+|+.+++.+++|++.|. +....+++...|+..+.. ....||+|
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~---~~~~~~~v~~~DAn~ll~~~~~~fD~I 125 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNG---LEDERIEVSNMDANVLLYSRQERFDVI 125 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT----SGCCEEEEES-HHHHHCHSTT-EEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcc---ccCceEEEehhhHHHHhhhccccCCEE
Confidence 4568999999999988777654 99999999999999999998855 433368999999876542 34689999
Q ss_pred EEccC--hHHHHHHHHhccCCCcEEEEEEcC
Q psy7830 208 FFGAG--TTEVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 208 i~~~~--~~~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
=.+.- ..-+++...+.++.||.|.++..+
T Consensus 126 DlDPfGSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 126 DLDPFGSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp EE--SS--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred EeCCCCCccHhHHHHHHHhhcCCEEEEeccc
Confidence 77642 235678888999999999998855
No 256
>KOG4589|consensus
Probab=96.99 E-value=0.0026 Score=56.16 Aligned_cols=91 Identities=22% Similarity=0.194 Sum_probs=59.8
Q ss_pred CCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc-CCCCCC-------
Q psy7830 132 LQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK-DARWGH------- 198 (364)
Q Consensus 132 l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~-D~~~~~------- 198 (364)
++|+++|||+||.+|..+..+-++ .|.|||+-. +.. .+.+.++++ |+.+..
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~p-------~~Ga~~i~~~dvtdp~~~~ki~e 130 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IEP-------PEGATIIQGNDVTDPETYRKIFE 130 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------ccC-------CCCcccccccccCCHHHHHHHHH
Confidence 579999999999999999888776 899999842 111 123444554 443210
Q ss_pred -CCCCCeeEEEEccChH-----------------HHHHHHHhccCCCcEEEEEEcCCC
Q psy7830 199 -AEGGPYDVIFFGAGTT-----------------EVSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 199 -~~~~~fD~Ii~~~~~~-----------------~l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
.++.+.|+|+++..-. .++--....++|+|.+++-+....
T Consensus 131 ~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 131 ALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred hCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 1235678888765421 123344567889999998776554
No 257
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.98 E-value=0.001 Score=59.95 Aligned_cols=101 Identities=13% Similarity=0.098 Sum_probs=59.8
Q ss_pred CCCEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHh----cC--------------CC---------
Q psy7830 134 NGSRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKI----SR--------------PD--------- 180 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~----~~--------------~~--------- 180 (364)
..-++.|-|||+||+...+.-+ .|++.|+|+++++.|++|+.- +. ++
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 3458999999999998666543 999999999999999998731 00 00
Q ss_pred ---------CC-CCCCEEEEEcCCCCCC-----CCCCCeeEEEEccCh---------------HHHHHHHHhccCCCcEE
Q psy7830 181 ---------LL-QSKTLEFILKDARWGH-----AEGGPYDVIFFGAGT---------------TEVSKTILSQLKPNGRI 230 (364)
Q Consensus 181 ---------~l-~~~~v~~~~~D~~~~~-----~~~~~fD~Ii~~~~~---------------~~l~~~l~~~LkpGG~L 230 (364)
.. +.....+.+.|+++.. ......|+|+.+.++ ..++..+...|..++++
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV 210 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVV 210 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EE
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEE
Confidence 00 1123567778877521 112346999887554 23788999999667777
Q ss_pred EEEE
Q psy7830 231 VAPV 234 (364)
Q Consensus 231 vi~~ 234 (364)
+++.
T Consensus 211 ~v~~ 214 (246)
T PF11599_consen 211 AVSD 214 (246)
T ss_dssp EEEE
T ss_pred EEec
Confidence 7643
No 258
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=96.93 E-value=0.0087 Score=56.41 Aligned_cols=102 Identities=24% Similarity=0.119 Sum_probs=69.5
Q ss_pred CCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHh----cC----------C---------CC-------
Q psy7830 134 NGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKI----SR----------P---------DL------- 181 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~----~~----------~---------~~------- 181 (364)
...+||--|||-|.++..+|.+ .+.|.|.|--|+-..+--+.. +. . ..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~ 135 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVD 135 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcC
Confidence 3568999999999999999999 999999999997665443221 00 0 00
Q ss_pred -----CCCCCEEEEEcCCCCCCCCC---CCeeEEEEccCh---H---HHHHHHHhccCCCcEEEEEEcC
Q psy7830 182 -----LQSKTLEFILKDARWGHAEG---GPYDVIFFGAGT---T---EVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 182 -----l~~~~v~~~~~D~~~~~~~~---~~fD~Ii~~~~~---~---~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
....++....||..+..... +.||+|+...-. + ..++.+.++||||| +.+-+|+
T Consensus 136 p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG-~WIN~GP 203 (270)
T PF07942_consen 136 PSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGG-YWINFGP 203 (270)
T ss_pred cccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCC-EEEecCC
Confidence 00125666677776654443 689998765332 2 34678999999999 4555555
No 259
>KOG3115|consensus
Probab=96.90 E-value=0.0034 Score=56.16 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=69.9
Q ss_pred CCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHh-cCCC-CCCCCCEEEEEcCCCCCCCC---CCCe
Q psy7830 134 NGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKI-SRPD-LLQSKTLEFILKDARWGHAE---GGPY 204 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~-~~~~-~l~~~~v~~~~~D~~~~~~~---~~~f 204 (364)
..-.+.|||||-|.+...++.. -+.|.||--..-+..++++.. .... .-...|+.+...++....+. .++.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 3346899999999999999988 899999999888888888766 2100 01145777777776544332 2233
Q ss_pred eEEEEccCh--------------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830 205 DVIFFGAGT--------------TEVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 205 D~Ii~~~~~--------------~~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
+.++...+- .+++.+..-+|++||.++......
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~ 186 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVK 186 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHH
Confidence 333322222 235667778899999999876543
No 260
>KOG2671|consensus
Probab=96.87 E-value=0.0025 Score=61.22 Aligned_cols=118 Identities=15% Similarity=0.056 Sum_probs=82.0
Q ss_pred ccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHH-------HHHHHHhcCCCCCCC
Q psy7830 114 VMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNN-------SLKNIKISRPDLLQS 184 (364)
Q Consensus 114 ~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~-------a~~~~~~~~~~~l~~ 184 (364)
+.+.+.+.-.+..... +++|+-|+|--.|||.+....++. .|+|.|||-.++.. .+.|+++-. ...
T Consensus 190 TSmDAeLSli~AN~Am--v~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg---~~~ 264 (421)
T KOG2671|consen 190 TSMDAELSLIMANQAM--VKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYG---SSS 264 (421)
T ss_pred cccchhHHHHHhhhhc--cCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhC---Ccc
Confidence 3344444333333333 789999999999999999888888 99999999988873 345665511 111
Q ss_pred CCEEEEEcCCCCCC-CCCCCeeEEEEccChHH---------------------------------------HHHHHHhcc
Q psy7830 185 KTLEFILKDARWGH-AEGGPYDVIFFGAGTTE---------------------------------------VSKTILSQL 224 (364)
Q Consensus 185 ~~v~~~~~D~~~~~-~~~~~fD~Ii~~~~~~~---------------------------------------l~~~l~~~L 224 (364)
.-+.++.+|....+ .....||.|+|+.+..- ++.-..+.|
T Consensus 265 ~fldvl~~D~sn~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L 344 (421)
T KOG2671|consen 265 QFLDVLTADFSNPPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRL 344 (421)
T ss_pred hhhheeeecccCcchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhh
Confidence 23677888876543 33468999999877521 345667889
Q ss_pred CCCcEEEEEEcC
Q psy7830 225 KPNGRIVAPVGN 236 (364)
Q Consensus 225 kpGG~Lvi~~~~ 236 (364)
..||++++=.+.
T Consensus 345 ~~ggrlv~w~p~ 356 (421)
T KOG2671|consen 345 VDGGRLVFWLPT 356 (421)
T ss_pred hcCceEEEecCc
Confidence 999999986653
No 261
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.85 E-value=0.011 Score=54.73 Aligned_cols=109 Identities=13% Similarity=0.121 Sum_probs=73.2
Q ss_pred HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830 121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW 196 (364)
Q Consensus 121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~ 196 (364)
...+.+.+..++.+..+|+|||||-=-++..+... .++|+|||..+++....-+.. ++ .+.++...|...
T Consensus 92 Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~-----l~-~~~~~~v~Dl~~ 165 (251)
T PF07091_consen 92 LDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAV-----LG-VPHDARVRDLLS 165 (251)
T ss_dssp HHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHH-----TT--CEEEEEE-TTT
T ss_pred HHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHh-----hC-CCcceeEeeeec
Confidence 45666777666677899999999999898877665 999999999999999988776 32 377888889876
Q ss_pred CCCCCCCeeEEEEccChHHHH-------HHHHhccCCCcEEEEEEcCC
Q psy7830 197 GHAEGGPYDVIFFGAGTTEVS-------KTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 197 ~~~~~~~fD~Ii~~~~~~~l~-------~~l~~~LkpGG~Lvi~~~~~ 237 (364)
..+ ....|+.+.--.++-+- -++.+.++ .=.+++|.+..
T Consensus 166 ~~~-~~~~DlaLllK~lp~le~q~~g~g~~ll~~~~-~~~~vVSfPtr 211 (251)
T PF07091_consen 166 DPP-KEPADLALLLKTLPCLERQRRGAGLELLDALR-SPHVVVSFPTR 211 (251)
T ss_dssp SHT-TSEESEEEEET-HHHHHHHSTTHHHHHHHHSC-ESEEEEEEES-
T ss_pred cCC-CCCcchhhHHHHHHHHHHHhcchHHHHHHHhC-CCeEEEecccc
Confidence 644 35799999877665432 23333333 22566666653
No 262
>KOG2352|consensus
Probab=96.84 E-value=0.0075 Score=60.60 Aligned_cols=99 Identities=10% Similarity=0.090 Sum_probs=77.6
Q ss_pred cCCCCC-EEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeE
Q psy7830 131 HLQNGS-RVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDV 206 (364)
Q Consensus 131 ~l~~g~-~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~ 206 (364)
++.+-. ++|-+|||.--++..+-+- .|+.+|+|+..++.......+ ..+-..+...|+....+++++||+
T Consensus 44 ~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~------~~~~~~~~~~d~~~l~fedESFdi 117 (482)
T KOG2352|consen 44 YLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK------ERPEMQMVEMDMDQLVFEDESFDI 117 (482)
T ss_pred hhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc------CCcceEEEEecchhccCCCcceeE
Confidence 345666 9999999999888887766 999999999999888765433 124688999999998888899999
Q ss_pred EEEccChHH----------------HHHHHHhccCCCcEEEEEEc
Q psy7830 207 IFFGAGTTE----------------VSKTILSQLKPNGRIVAPVG 235 (364)
Q Consensus 207 Ii~~~~~~~----------------l~~~l~~~LkpGG~Lvi~~~ 235 (364)
|+.-+.+++ .+.++.+++++||+.+..+.
T Consensus 118 VIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 118 VIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred EEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 986554432 34688999999999665444
No 263
>KOG3178|consensus
Probab=96.84 E-value=0.0046 Score=59.72 Aligned_cols=88 Identities=15% Similarity=0.101 Sum_probs=70.3
Q ss_pred CEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccCh
Q psy7830 136 SRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGT 213 (364)
Q Consensus 136 ~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~ 213 (364)
...+|+|.|.|..+..+... +|-+++.+...+..++.++. +.|+.+.+|+....+ +-|+|+.--.+
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~---------~gV~~v~gdmfq~~P---~~daI~mkWiL 246 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA---------PGVEHVAGDMFQDTP---KGDAIWMKWIL 246 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc---------CCcceecccccccCC---CcCeEEEEeec
Confidence 67899999999999777767 89999999988888777652 358888899876643 34688765444
Q ss_pred H--------HHHHHHHhccCCCcEEEEEEc
Q psy7830 214 T--------EVSKTILSQLKPNGRIVAPVG 235 (364)
Q Consensus 214 ~--------~l~~~l~~~LkpGG~Lvi~~~ 235 (364)
+ .+++++++.|+|||.+++...
T Consensus 247 hdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 247 HDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred ccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 3 478999999999999998775
No 264
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.76 E-value=0.012 Score=57.67 Aligned_cols=96 Identities=23% Similarity=0.240 Sum_probs=66.8
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc-CCC-C--CCCCCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK-DAR-W--GHAEGG 202 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~-D~~-~--~~~~~~ 202 (364)
..++.+|+-+|||+ |.++..+++. +|+++|.++..++.|++.... ..+..... +.. . ......
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~--------~~~~~~~~~~~~~~~~~~t~g~ 237 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA--------DVVVNPSEDDAGAEILELTGGR 237 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC--------eEeecCccccHHHHHHHHhCCC
Confidence 34555999999998 7777777776 999999999999999885422 11111111 110 0 011123
Q ss_pred CeeEEEEccChHHHHHHHHhccCCCcEEEEEEc
Q psy7830 203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVG 235 (364)
Q Consensus 203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~~ 235 (364)
.+|+++-.......+..+.+.+++||.+++.-.
T Consensus 238 g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 238 GADVVIEAVGSPPALDQALEALRPGGTVVVVGV 270 (350)
T ss_pred CCCEEEECCCCHHHHHHHHHHhcCCCEEEEEec
Confidence 699999877777788999999999999887443
No 265
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.73 E-value=0.02 Score=53.71 Aligned_cols=110 Identities=16% Similarity=0.126 Sum_probs=65.8
Q ss_pred HHHHHHHHHhccCC-CCCEEEEECCCcc--HHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC--EEE
Q psy7830 120 YIARCLEQLVDHLQ-NGSRVLDIGSGQG--YMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKT--LEF 189 (364)
Q Consensus 120 ~~a~~l~~L~~~l~-~g~~VLDiGcGsG--~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~--v~~ 189 (364)
...+..++|.. . .=...||||||-- ..+-.+++. +|+-+|++|-.+..++..+..+ ++ ..+
T Consensus 55 Fl~RaVr~la~--~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~-------~~g~t~~ 125 (267)
T PF04672_consen 55 FLRRAVRYLAE--EAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN-------PRGRTAY 125 (267)
T ss_dssp HHHHHHHHHHC--TT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT--------TTSEEEE
T ss_pred HHHHHHHHHHH--hcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC-------CCccEEE
Confidence 44666777662 3 2357999999943 344445444 9999999999999999988663 34 889
Q ss_pred EEcCCCCCC---C---CCCCee-----EEEEccChHH---------HHHHHHhccCCCcEEEEEEcCCC
Q psy7830 190 ILKDARWGH---A---EGGPYD-----VIFFGAGTTE---------VSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 190 ~~~D~~~~~---~---~~~~fD-----~Ii~~~~~~~---------l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
+.+|+.+.. . -.+-+| .|+....+++ +...+++.|.||.+|+++-....
T Consensus 126 v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 126 VQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp EE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred EeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 999987521 0 001122 3445555543 67899999999999999987654
No 266
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.72 E-value=0.0078 Score=51.04 Aligned_cols=79 Identities=22% Similarity=0.257 Sum_probs=54.7
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC--CCCCeeEEEEccCh-H--------------HHHH
Q psy7830 156 SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA--EGGPYDVIFFGAGT-T--------------EVSK 218 (364)
Q Consensus 156 ~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~--~~~~fD~Ii~~~~~-~--------------~l~~ 218 (364)
+|+|+||.+++++.++++++... + ..+++++...=..+.. +.+++|.++.|..+ + ..++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~---~-~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG---L-EDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-----GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcC---C-CCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence 69999999999999999999832 1 2479998876443321 12479999988654 1 1467
Q ss_pred HHHhccCCCcEEEEEEcCCC
Q psy7830 219 TILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 219 ~l~~~LkpGG~Lvi~~~~~~ 238 (364)
.+.++|+|||++++.+-...
T Consensus 77 ~al~lL~~gG~i~iv~Y~GH 96 (140)
T PF06962_consen 77 AALELLKPGGIITIVVYPGH 96 (140)
T ss_dssp HHHHHEEEEEEEEEEE--ST
T ss_pred HHHHhhccCCEEEEEEeCCC
Confidence 88999999999999886644
No 267
>KOG1562|consensus
Probab=96.66 E-value=0.0054 Score=57.88 Aligned_cols=101 Identities=17% Similarity=0.218 Sum_probs=77.9
Q ss_pred CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHh--cCCCCCCCCCEEEEEcCCCCCCCC--CCCe
Q psy7830 133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKI--SRPDLLQSKTLEFILKDARWGHAE--GGPY 204 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~--~~~~~l~~~~v~~~~~D~~~~~~~--~~~f 204 (364)
...++||-||-|.|......++. .+.-+|++...++..++-+.. .. ...++|.+..||...+... .++|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~g---y~~~~v~l~iGDG~~fl~~~~~~~~ 196 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACG---YEGKKVKLLIGDGFLFLEDLKENPF 196 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcc---cCCCceEEEeccHHHHHHHhccCCc
Confidence 34568999999999988777766 899999999999999987766 22 3446899999998654322 4789
Q ss_pred eEEEEccChH----------HHHHHHHhccCCCcEEEEEEcC
Q psy7830 205 DVIFFGAGTT----------EVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 205 D~Ii~~~~~~----------~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
|+|+....-. .....+.+.||+||+++.....
T Consensus 197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec 238 (337)
T KOG1562|consen 197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGEC 238 (337)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecce
Confidence 9999764421 2457889999999999886644
No 268
>KOG0024|consensus
Probab=96.63 E-value=0.0098 Score=56.91 Aligned_cols=95 Identities=18% Similarity=0.164 Sum_probs=68.6
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC-----CCC---C
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA-----RWG---H 198 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~-----~~~---~ 198 (364)
+++|.+||-+|+|+ |..+...|+. +|+.+|+++..++.|++ +.. ..+....... .+. .
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga--------~~~~~~~~~~~~~~~~~~v~~~ 237 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGA--------TVTDPSSHKSSPQELAELVEKA 237 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCC--------eEEeeccccccHHHHHHHHHhh
Confidence 68999999999997 7777777766 99999999999999998 433 2222111111 010 1
Q ss_pred CCCCCeeEEEEccChHHHHHHHHhccCCCcEEEEEEc
Q psy7830 199 AEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVG 235 (364)
Q Consensus 199 ~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~~ 235 (364)
.....+|+.+-....+-..+.....++.||.+++...
T Consensus 238 ~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg~ 274 (354)
T KOG0024|consen 238 LGKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVLVGM 274 (354)
T ss_pred ccccCCCeEEEccCchHHHHHHHHHhccCCEEEEecc
Confidence 1123599999888888888889999999999665443
No 269
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.58 E-value=0.0048 Score=55.94 Aligned_cols=96 Identities=19% Similarity=0.098 Sum_probs=64.2
Q ss_pred HHHHHHHhccCC------CCCEEEEECCCccHHHHHHHcc-eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC
Q psy7830 122 ARCLEQLVDHLQ------NGSRVLDIGSGQGYMATAKEWL-SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA 194 (364)
Q Consensus 122 a~~l~~L~~~l~------~g~~VLDiGcGsG~~a~~la~~-~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~ 194 (364)
..+++||.+... ...++|||||=+......-... .|+.||+.++ .-.+.+.|.
T Consensus 33 K~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~fdvt~IDLns~--------------------~~~I~qqDF 92 (219)
T PF11968_consen 33 KWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGWFDVTRIDLNSQ--------------------HPGILQQDF 92 (219)
T ss_pred HHHHHHhhhhccccccccccceEEeecccCCCCcccccCceeeEEeecCCC--------------------CCCceeecc
Confidence 445666654322 1258999999877766554444 9999999752 122355666
Q ss_pred CCCCC---CCCCeeEEEEccChH---------HHHHHHHhccCCCcE-----EEEEEcCC
Q psy7830 195 RWGHA---EGGPYDVIFFGAGTT---------EVSKTILSQLKPNGR-----IVAPVGNV 237 (364)
Q Consensus 195 ~~~~~---~~~~fD~Ii~~~~~~---------~l~~~l~~~LkpGG~-----Lvi~~~~~ 237 (364)
.+.+. +.+.||+|.+..++. .++..+.+.|+|+|. |++..+.+
T Consensus 93 m~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~ 152 (219)
T PF11968_consen 93 MERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP 152 (219)
T ss_pred ccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch
Confidence 55432 246899997765553 377899999999999 77766553
No 270
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.58 E-value=0.0071 Score=53.82 Aligned_cols=99 Identities=19% Similarity=0.147 Sum_probs=59.0
Q ss_pred CCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHH----HHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCC
Q psy7830 132 LQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPET----LNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGG 202 (364)
Q Consensus 132 l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~----l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~ 202 (364)
+++|++|+|+=.|.|++|..++.. .|+++=..+.. ....+.+..... -...|++.+-.+...+.. ..
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e---~~~aN~e~~~~~~~A~~~-pq 121 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAARE---PVYANVEVIGKPLVALGA-PQ 121 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhh---hhhhhhhhhCCcccccCC-CC
Confidence 689999999999999999999887 77776443321 111111110000 012355555544444332 23
Q ss_pred CeeEEEEccChH-------------HHHHHHHhccCCCcEEEEEE
Q psy7830 203 PYDVIFFGAGTT-------------EVSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 203 ~fD~Ii~~~~~~-------------~l~~~l~~~LkpGG~Lvi~~ 234 (364)
..|+++.+...+ .+...+.+.|||||++++..
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 455555433332 25578999999999998755
No 271
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.54 E-value=0.007 Score=54.59 Aligned_cols=54 Identities=28% Similarity=0.241 Sum_probs=42.8
Q ss_pred ChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHH
Q psy7830 116 EPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLK 172 (364)
Q Consensus 116 s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~ 172 (364)
-...++.+++.... .+|+.|||.-||||..+.++.++ +.+|+|+++..++.|++
T Consensus 176 kP~~l~~~lI~~~t---~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 176 KPVELIERLIKAST---NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-HHHHHHHHHHHS----TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred CCHHHHHHHHHhhh---ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 34567777777654 78999999999999999888888 99999999999999875
No 272
>PRK11524 putative methyltransferase; Provisional
Probab=96.44 E-value=0.0091 Score=56.82 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHh
Q psy7830 119 SYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKI 176 (364)
Q Consensus 119 ~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~ 176 (364)
.+..+++.... .+|+.|||.-||||..+.++.++ +.+|+|++++.++.|++++..
T Consensus 196 ~L~erlI~~~S---~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 196 ALLKRIILASS---NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHhC---CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 45555555543 79999999999999999888887 999999999999999999864
No 273
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.37 E-value=0.0095 Score=56.45 Aligned_cols=68 Identities=16% Similarity=0.013 Sum_probs=52.9
Q ss_pred EEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC--CCCeeEEEEcc
Q psy7830 137 RVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE--GGPYDVIFFGA 211 (364)
Q Consensus 137 ~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~--~~~fD~Ii~~~ 211 (364)
+|+|+.||.|.++..+... .|.++|+++.+++..+.|... . ++.+|+...... ...+|+|+...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~----------~-~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN----------K-LIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC----------C-CccCccccCchhhcCCCCCEEEeCC
Confidence 6999999999998877766 788999999999988887632 1 455666654432 25699999998
Q ss_pred ChHH
Q psy7830 212 GTTE 215 (364)
Q Consensus 212 ~~~~ 215 (364)
+|+.
T Consensus 71 PCq~ 74 (275)
T cd00315 71 PCQP 74 (275)
T ss_pred CChh
Confidence 8864
No 274
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.20 E-value=0.019 Score=52.99 Aligned_cols=84 Identities=25% Similarity=0.259 Sum_probs=50.5
Q ss_pred CCCCC--EEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHh--cCCCCC--CCCCEEEEEcCCCCCCC-CCC
Q psy7830 132 LQNGS--RVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKI--SRPDLL--QSKTLEFILKDARWGHA-EGG 202 (364)
Q Consensus 132 l~~g~--~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~--~~~~~l--~~~~v~~~~~D~~~~~~-~~~ 202 (364)
+++|. +|||.-+|-|.-+..++.. +|+++|.||-+....+.-+.+ ...+.. -..+++++.+|..+... .+.
T Consensus 71 lk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~ 150 (234)
T PF04445_consen 71 LKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDN 150 (234)
T ss_dssp -BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS
T ss_pred CCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCC
Confidence 46664 8999999999999998877 999999999887776654443 110000 01379999999887554 247
Q ss_pred CeeEEEEccChHH
Q psy7830 203 PYDVIFFGAGTTE 215 (364)
Q Consensus 203 ~fD~Ii~~~~~~~ 215 (364)
+||+|+.+.++++
T Consensus 151 s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 151 SFDVVYFDPMFPE 163 (234)
T ss_dssp --SEEEE--S---
T ss_pred CCCEEEECCCCCC
Confidence 8999999988864
No 275
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.13 E-value=0.04 Score=49.83 Aligned_cols=111 Identities=12% Similarity=0.101 Sum_probs=58.4
Q ss_pred ChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE
Q psy7830 116 EPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL 187 (364)
Q Consensus 116 s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v 187 (364)
..|.-...+-+.+-+ ++ .+.|+|+|.-.|+.++.+|.. +|+|+|++........ .+... + .++|
T Consensus 16 q~P~Dm~~~qeli~~-~k-Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a--~e~hp---~-~~rI 87 (206)
T PF04989_consen 16 QYPQDMVAYQELIWE-LK-PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA--IESHP---M-SPRI 87 (206)
T ss_dssp S-HHHHHHHHHHHHH-H---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G--GGG--------TTE
T ss_pred cCHHHHHHHHHHHHH-hC-CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH--Hhhcc---c-cCce
Confidence 345444555555542 33 568999999999999877654 9999999754332211 11100 1 2589
Q ss_pred EEEEcCCCCCC--------CCCCCeeEEEEccCh--H---HHHHHHHhccCCCcEEEEEE
Q psy7830 188 EFILKDARWGH--------AEGGPYDVIFFGAGT--T---EVSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 188 ~~~~~D~~~~~--------~~~~~fD~Ii~~~~~--~---~l~~~l~~~LkpGG~Lvi~~ 234 (364)
++++||..+.. .......+|+-+..- . ..++....++++|+++|+..
T Consensus 88 ~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 88 TFIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp EEEES-SSSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred EEEECCCCCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 99999976421 111234566655542 1 24566889999999998633
No 276
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.13 E-value=0.024 Score=55.01 Aligned_cols=93 Identities=25% Similarity=0.247 Sum_probs=60.6
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEcCCCCCCCCCCCee
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILKDARWGHAEGGPYD 205 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~D~~~~~~~~~~fD 205 (364)
..+|++||-.|||. |.++..+++. +|+++|.+++.++.+++ + +...+ .....+........+.+|
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~-l--------Ga~~vi~~~~~~~~~~~~~~g~~D 237 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE-M--------GADKLVNPQNDDLDHYKAEKGYFD 237 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH-c--------CCcEEecCCcccHHHHhccCCCCC
Confidence 35789999999864 5556666665 68999999999888875 2 11111 111111111111123599
Q ss_pred EEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 206 VIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 206 ~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
+|+-............+.|++||++++.
T Consensus 238 ~vid~~G~~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 238 VSFEVSGHPSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred EEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 9997766556677888999999998864
No 277
>KOG4058|consensus
Probab=96.08 E-value=0.025 Score=48.20 Aligned_cols=106 Identities=23% Similarity=0.194 Sum_probs=70.1
Q ss_pred HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830 121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG 197 (364)
Q Consensus 121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~ 197 (364)
++..+..+. -++..+.+|+|+|.|....+.++. ..+|+|++|..+..++-..-+.. ++ +..+|..-|....
T Consensus 61 v~nVLSll~--~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g---~~-k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 61 VENVLSLLR--GNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAG---CA-KSTRFRRKDLWKV 134 (199)
T ss_pred HHHHHHHcc--CCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHh---cc-cchhhhhhhhhhc
Confidence 345566555 245568999999999999888877 88999999999999987765511 22 4677888787655
Q ss_pred CCCCCCeeEEEE-ccChHHHHHHHHhccCCCcEEEE
Q psy7830 198 HAEGGPYDVIFF-GAGTTEVSKTILSQLKPNGRIVA 232 (364)
Q Consensus 198 ~~~~~~fD~Ii~-~~~~~~l~~~l~~~LkpGG~Lvi 232 (364)
...+-.+-+|+- -..++.+-..+..-+..|-+++.
T Consensus 135 dl~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vva 170 (199)
T KOG4058|consen 135 DLRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVA 170 (199)
T ss_pred cccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEE
Confidence 433323333332 22334455666666777776664
No 278
>PRK13699 putative methylase; Provisional
Probab=95.98 E-value=0.025 Score=52.05 Aligned_cols=55 Identities=16% Similarity=0.127 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHh
Q psy7830 119 SYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKI 176 (364)
Q Consensus 119 ~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~ 176 (364)
.+...+++.. -.+|+.|||.-||||..+.+..+. +.+|+|++++..+.+.+++..
T Consensus 151 ~l~~~~i~~~---s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 151 TSLQPLIESF---THPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred HHHHHHHHHh---CCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence 3444444433 478999999999999999888877 999999999999999998876
No 279
>PHA01634 hypothetical protein
Probab=95.96 E-value=0.04 Score=45.84 Aligned_cols=44 Identities=9% Similarity=-0.176 Sum_probs=40.1
Q ss_pred CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHh
Q psy7830 133 QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKI 176 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~ 176 (364)
-.+.+|+|||++.|..++.++.. +|+++|.++...+..+++++.
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhh
Confidence 46889999999999999988877 999999999999999998876
No 280
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.92 E-value=0.051 Score=52.99 Aligned_cols=124 Identities=19% Similarity=0.168 Sum_probs=87.7
Q ss_pred ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHH
Q psy7830 100 FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIK 175 (364)
Q Consensus 100 ~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~ 175 (364)
..|.++.+.+...-+ -.++..+.+ .-..+|+|.=||+|.=++..+.. +|+.-|++|.+++.+++|+.
T Consensus 27 pVFYNP~m~~NRDls-------V~~l~~~~~--~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~ 97 (380)
T COG1867 27 PVFYNPAMEFNRDLS-------VLVLKAFGK--LLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVR 97 (380)
T ss_pred cceeCchhhhccchh-------HHHHHHhhc--cCCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHH
Confidence 356666666665532 233444432 11678999999999999888876 79999999999999999998
Q ss_pred hcCCCCCCCCCEEEEEcCCCCCCCC-CCCeeEEEEccC--hHHHHHHHHhccCCCcEEEEEEcCC
Q psy7830 176 ISRPDLLQSKTLEFILKDARWGHAE-GGPYDVIFFGAG--TTEVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 176 ~~~~~~l~~~~v~~~~~D~~~~~~~-~~~fD~Ii~~~~--~~~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
.|. ..+...+..|+..+... ...||+|=.+.- .--+++...+.++.||.|.++..+.
T Consensus 98 ~N~-----~~~~~v~n~DAN~lm~~~~~~fd~IDiDPFGSPaPFlDaA~~s~~~~G~l~vTATD~ 157 (380)
T COG1867 98 LNS-----GEDAEVINKDANALLHELHRAFDVIDIDPFGSPAPFLDAALRSVRRGGLLCVTATDT 157 (380)
T ss_pred hcC-----cccceeecchHHHHHHhcCCCccEEecCCCCCCchHHHHHHHHhhcCCEEEEEeccc
Confidence 852 23566666887665443 367999855421 1235667778888899999987654
No 281
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=95.84 E-value=0.039 Score=53.80 Aligned_cols=92 Identities=20% Similarity=0.166 Sum_probs=59.0
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeC---CHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCe
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLL---LPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPY 204 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDi---s~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~f 204 (364)
.++|.+||-+|+|. |.++..+++. +|++++. ++...+.+++ ++...+.....|..+ ......+
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~---------~Ga~~v~~~~~~~~~-~~~~~~~ 239 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE---------LGATYVNSSKTPVAE-VKLVGEF 239 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH---------cCCEEecCCccchhh-hhhcCCC
Confidence 35789999999875 5666666666 8888886 6777776654 221111111111111 0112469
Q ss_pred eEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 205 DVIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 205 D~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
|+|+-............+.|++||++++.
T Consensus 240 d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 240 DLIIEATGVPPLAFEALPALAPNGVVILF 268 (355)
T ss_pred CEEEECcCCHHHHHHHHHHccCCcEEEEE
Confidence 99997776666778889999999998753
No 282
>KOG0822|consensus
Probab=95.58 E-value=0.039 Score=55.93 Aligned_cols=94 Identities=17% Similarity=0.135 Sum_probs=69.4
Q ss_pred CEEEEECCCccHHHHHHHcc--------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830 136 SRVLDIGSGQGYMATAKEWL--------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI 207 (364)
Q Consensus 136 ~~VLDiGcGsG~~a~~la~~--------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I 207 (364)
..|+-+|+|-|-+..+..+. +++++|.+|.++-..+..--+.. ..+|+++..|++.+.++..+.|++
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W-----~~~Vtii~~DMR~w~ap~eq~DI~ 443 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECW-----DNRVTIISSDMRKWNAPREQADII 443 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhh-----cCeeEEEeccccccCCchhhccch
Confidence 35788999999877554433 89999999999887766332211 258999999999887545789998
Q ss_pred EE--------ccChHHHHHHHHhccCCCcEEEEEE
Q psy7830 208 FF--------GAGTTEVSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 208 i~--------~~~~~~l~~~l~~~LkpGG~Lvi~~ 234 (364)
++ |-.-++.+..+.+.|||+|+-+=+.
T Consensus 444 VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 444 VSELLGSFGDNELSPECLDGAQKFLKPDGISIPSS 478 (649)
T ss_pred HHHhhccccCccCCHHHHHHHHhhcCCCceEccch
Confidence 75 2233567888999999998766433
No 283
>KOG3201|consensus
Probab=95.47 E-value=0.013 Score=50.62 Aligned_cols=103 Identities=19% Similarity=0.129 Sum_probs=65.5
Q ss_pred CCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC--CCCCCCeeE
Q psy7830 134 NGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG--HAEGGPYDV 206 (364)
Q Consensus 134 ~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~--~~~~~~fD~ 206 (364)
.|.+|||+|.|- |..++.+|.. .|...|-++..++..++....|.. .+.....+...+.... ..+...||+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~--s~~tsc~vlrw~~~~aqsq~eq~tFDi 106 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMA--SSLTSCCVLRWLIWGAQSQQEQHTFDI 106 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccc--cccceehhhHHHHhhhHHHHhhCcccE
Confidence 578999999985 4444555554 899999999999888876554320 0112232222222111 122358999
Q ss_pred EEEccCh------HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830 207 IFFGAGT------TEVSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 207 Ii~~~~~------~~l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
|++...+ ..+.+.+..+|+|.|.-++..+.++
T Consensus 107 IlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg 144 (201)
T KOG3201|consen 107 ILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRG 144 (201)
T ss_pred EEeccchhHHHHHHHHHHHHHHHhCcccceeEecCccc
Confidence 9875432 2477899999999999776665544
No 284
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.37 E-value=0.065 Score=49.08 Aligned_cols=99 Identities=17% Similarity=0.206 Sum_probs=61.6
Q ss_pred HHHHHHHHHhc----cCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830 120 YIARCLEQLVD----HLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL 191 (364)
Q Consensus 120 ~~a~~l~~L~~----~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~ 191 (364)
.+..+.++|.. ...++-++||||.|.-.+=-.+... +.+|.|+|+..++.|+.++..|.. + ...|++..
T Consensus 60 Yih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~--l-~~~I~lr~ 136 (292)
T COG3129 60 YIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPG--L-ERAIRLRR 136 (292)
T ss_pred HHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcc--h-hhheeEEe
Confidence 44555555542 1235668899998864433233322 899999999999999999877420 1 12455544
Q ss_pred c-CCCC---C-CCCCCCeeEEEEccChHHHHHHHH
Q psy7830 192 K-DARW---G-HAEGGPYDVIFFGAGTTEVSKTIL 221 (364)
Q Consensus 192 ~-D~~~---~-~~~~~~fD~Ii~~~~~~~l~~~l~ 221 (364)
. |-.. . .-..+.||+++||.+++.-.+...
T Consensus 137 qk~~~~if~giig~nE~yd~tlCNPPFh~s~~da~ 171 (292)
T COG3129 137 QKDSDAIFNGIIGKNERYDATLCNPPFHDSAADAR 171 (292)
T ss_pred ccCccccccccccccceeeeEecCCCcchhHHHHH
Confidence 3 2211 1 112468999999999987554443
No 285
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=95.29 E-value=0.11 Score=49.48 Aligned_cols=93 Identities=28% Similarity=0.304 Sum_probs=61.2
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC-C--CCCCCCCe
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR-W--GHAEGGPY 204 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~-~--~~~~~~~f 204 (364)
+.++.+||..|+|. |..++.+++. +|++++.+++..+.+++. +...+-....+.. . .......+
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~---------g~~~~~~~~~~~~~~~~~~~~~~~~ 233 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKEL---------GADEVLNSLDDSPKDKKAAGLGGGF 233 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh---------CCCEEEcCCCcCHHHHHHHhcCCCc
Confidence 67889999988763 6777777776 899999999888777542 1111110000000 0 01123569
Q ss_pred eEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 205 DVIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 205 D~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
|+|+...........+.+.|+++|+++..
T Consensus 234 D~vid~~g~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 234 DVIFDFVGTQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred eEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 99987665566788889999999998864
No 286
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.22 E-value=0.1 Score=53.71 Aligned_cols=94 Identities=21% Similarity=0.226 Sum_probs=62.3
Q ss_pred CCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC--------CCCC--
Q psy7830 133 QNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA--------RWGH-- 198 (364)
Q Consensus 133 ~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~--------~~~~-- 198 (364)
.++.+|+-+|||. |..++..++. .|+++|.+++.++.+++ + |...+.+...+. ....
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes-l--------GA~~v~i~~~e~~~~~~gya~~~s~~ 233 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES-M--------GAEFLELDFEEEGGSGDGYAKVMSEE 233 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-c--------CCeEEEeccccccccccchhhhcchh
Confidence 4789999999997 6666666666 99999999999998876 2 111111111000 0000
Q ss_pred ---------CC-CCCeeEEEEccChH-----HH-HHHHHhccCCCcEEEEEEc
Q psy7830 199 ---------AE-GGPYDVIFFGAGTT-----EV-SKTILSQLKPNGRIVAPVG 235 (364)
Q Consensus 199 ---------~~-~~~fD~Ii~~~~~~-----~l-~~~l~~~LkpGG~Lvi~~~ 235 (364)
.+ ...+|+|+.....+ .+ .+++.+.+||||+++..-.
T Consensus 234 ~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 234 FIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 00 13589999876542 34 5899999999999886544
No 287
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=94.98 E-value=0.14 Score=50.59 Aligned_cols=95 Identities=19% Similarity=0.241 Sum_probs=62.6
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC-CCC---CCCCCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD-ARW---GHAEGG 202 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D-~~~---~~~~~~ 202 (364)
+.++.+||.+|||+ |..+..+++. +|+++|.+++..+.+++... ...+.....+ ... ......
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~--------~~vi~~~~~~~~~~~l~~~~~~~ 253 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG--------AETINFEEVDDVVEALRELTGGR 253 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC--------cEEEcCCcchHHHHHHHHHcCCC
Confidence 67899999999988 8888888777 59999999999888876421 1111111111 100 011123
Q ss_pred CeeEEEEccCh---------------------HHHHHHHHhccCCCcEEEEEE
Q psy7830 203 PYDVIFFGAGT---------------------TEVSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 203 ~fD~Ii~~~~~---------------------~~l~~~l~~~LkpGG~Lvi~~ 234 (364)
.+|+|+-...- ......+.+.++++|+++..-
T Consensus 254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 68988764321 235678889999999998753
No 288
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.92 E-value=0.081 Score=51.26 Aligned_cols=98 Identities=16% Similarity=0.114 Sum_probs=59.1
Q ss_pred CCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEE----EEcCCCCCCCCCCCee
Q psy7830 135 GSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEF----ILKDARWGHAEGGPYD 205 (364)
Q Consensus 135 g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~----~~~D~~~~~~~~~~fD 205 (364)
..+|||+|.|+|.-..++-.. .++.++.|+..-+.... +..|. ....... ++.|-..++. ...|+
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~t-l~~nv----~t~~td~r~s~vt~dRl~lp~-ad~yt 187 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDT-LAENV----STEKTDWRASDVTEDRLSLPA-ADLYT 187 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHH-HHhhc----ccccCCCCCCccchhccCCCc-cceee
Confidence 457999999999877666554 78888988876554433 22211 1111111 2222222222 34688
Q ss_pred EEEEcc-Ch--------HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830 206 VIFFGA-GT--------TEVSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 206 ~Ii~~~-~~--------~~l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
++++.. .+ +..++.+..++.|||.||+......
T Consensus 188 l~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 188 LAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred hhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 776432 22 2367889999999999998775543
No 289
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=94.89 E-value=0.27 Score=47.54 Aligned_cols=87 Identities=15% Similarity=0.048 Sum_probs=57.1
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI 207 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I 207 (364)
+++|++||-.|+|. |..+..+++. +|++++.+++..+.+++. +.+.+ + |.... ..+.+|++
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~---------Ga~~v--i--~~~~~--~~~~~d~~ 227 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL---------GAASA--G--GAYDT--PPEPLDAA 227 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh---------CCcee--c--ccccc--CcccceEE
Confidence 67899999999753 4444555555 899999999888777652 22211 1 11111 12358877
Q ss_pred EEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 208 FFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 208 i~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
+.............+.|++||++++.
T Consensus 228 i~~~~~~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 228 ILFAPAGGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred EECCCcHHHHHHHHHhhCCCcEEEEE
Confidence 65444455677888999999999763
No 290
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.82 E-value=0.14 Score=49.72 Aligned_cols=86 Identities=19% Similarity=0.176 Sum_probs=56.6
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCee
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYD 205 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD 205 (364)
+++|++||-+|||. |.++..+++. +|+++|.+++.++.+++ +.. . ....+. .+...+|
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~----------~-~~~~~~----~~~~g~d 224 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE----------T-YLIDDI----PEDLAVD 224 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc----------e-eehhhh----hhccCCc
Confidence 46899999999875 4444454432 79999999988888764 211 1 111111 1122489
Q ss_pred EEEEccC---hHHHHHHHHhccCCCcEEEEE
Q psy7830 206 VIFFGAG---TTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 206 ~Ii~~~~---~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
+|+-... ....+....+.|++||++++.
T Consensus 225 ~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 225 HAFECVGGRGSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred EEEECCCCCccHHHHHHHHHhCcCCcEEEEE
Confidence 9986554 345677888999999998863
No 291
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=94.74 E-value=0.31 Score=50.20 Aligned_cols=122 Identities=13% Similarity=0.065 Sum_probs=74.2
Q ss_pred CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHc-----c---eEEEEeCCHHHHHHHHHHHHhcCCCCCC
Q psy7830 112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEW-----L---SSVRQLLLPETLNNSLKNIKISRPDLLQ 183 (364)
Q Consensus 112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~-----~---~V~~vDis~~~l~~a~~~~~~~~~~~l~ 183 (364)
|.+-+...++..+.+.+.....++..|.|..||+|.+.....+ . .+++.+..+.+...++.|+.-+. ..
T Consensus 195 g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~---~~ 271 (501)
T TIGR00497 195 GEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHN---ID 271 (501)
T ss_pred ceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcC---CC
Confidence 4444444555555555542223678999999999998765432 1 79999999999999999864311 11
Q ss_pred CCCEEEEEcCCCCCC--CCCCCeeEEEEccChHH-------------------------------HHHHHHhccCCCcEE
Q psy7830 184 SKTLEFILKDARWGH--AEGGPYDVIFFGAGTTE-------------------------------VSKTILSQLKPNGRI 230 (364)
Q Consensus 184 ~~~v~~~~~D~~~~~--~~~~~fD~Ii~~~~~~~-------------------------------l~~~l~~~LkpGG~L 230 (364)
.+......+|....+ ....+||.|++|.++.. .+..+...|++||+.
T Consensus 272 ~~t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~ 351 (501)
T TIGR00497 272 YANFNIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTA 351 (501)
T ss_pred ccccCcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeE
Confidence 122333334433211 11245888887765421 124567788999987
Q ss_pred EEEEcC
Q psy7830 231 VAPVGN 236 (364)
Q Consensus 231 vi~~~~ 236 (364)
.+....
T Consensus 352 aiI~~~ 357 (501)
T TIGR00497 352 AIVCFP 357 (501)
T ss_pred EEEecC
Confidence 766544
No 292
>KOG1501|consensus
Probab=94.69 E-value=0.086 Score=52.39 Aligned_cols=52 Identities=23% Similarity=0.284 Sum_probs=42.9
Q ss_pred EEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830 137 RVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK 192 (364)
Q Consensus 137 ~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~ 192 (364)
-|||||+|||.++..+++. .|+++|.-..|.+.|++-..+|. . .++|.++.-
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng---~-SdkI~vInk 123 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNG---M-SDKINVINK 123 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCC---C-ccceeeecc
Confidence 5899999999999888777 99999999999999999887743 2 256766654
No 293
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=94.66 E-value=0.12 Score=47.22 Aligned_cols=95 Identities=25% Similarity=0.270 Sum_probs=60.3
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC-C-CCCCCCee
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW-G-HAEGGPYD 205 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~-~-~~~~~~fD 205 (364)
+.++.+||..|+|+ |..+..+++. +|++++.++...+.+++.-... -+.....+... . ......+|
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~d 203 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADH--------VIDYKEEDLEEELRLTGGGGAD 203 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCce--------eccCCcCCHHHHHHHhcCCCCC
Confidence 47899999999986 5555556655 8999999988777765421100 01000001000 0 11135699
Q ss_pred EEEEccChHHHHHHHHhccCCCcEEEEEE
Q psy7830 206 VIFFGAGTTEVSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 206 ~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~ 234 (364)
+|+.+.........+.+.|+++|+++...
T Consensus 204 ~vi~~~~~~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 204 VVIDAVGGPETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EEEECCCCHHHHHHHHHhcccCCEEEEEc
Confidence 99977665466778889999999988644
No 294
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=94.65 E-value=0.042 Score=55.60 Aligned_cols=88 Identities=18% Similarity=0.114 Sum_probs=56.1
Q ss_pred CEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC-CCCCCCCCeeEEEE
Q psy7830 136 SRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR-WGHAEGGPYDVIFF 209 (364)
Q Consensus 136 ~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~-~~~~~~~~fD~Ii~ 209 (364)
..|+|+.+|.|+++++|... .|+-+ ..+..+...- .++. +| ++ -|-. .+..-..+||+|++
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIy---dRGL---IG-----~y-hDWCE~fsTYPRTYDLlHA 433 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIY---DRGL---IG-----VY-HDWCEAFSTYPRTYDLLHA 433 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhh---hccc---ch-----hc-cchhhccCCCCcchhheeh
Confidence 37999999999999999887 44444 2233332221 1221 11 12 1222 22222368999999
Q ss_pred ccChH---------HHHHHHHhccCCCcEEEEEEcC
Q psy7830 210 GAGTT---------EVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 210 ~~~~~---------~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
+..+. .++-++-|.|+|||.+++....
T Consensus 434 ~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~ 469 (506)
T PF03141_consen 434 DGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV 469 (506)
T ss_pred hhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH
Confidence 87764 3677899999999999986544
No 295
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.29 E-value=0.22 Score=46.77 Aligned_cols=93 Identities=24% Similarity=0.179 Sum_probs=58.6
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC-C--CCCCCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW-G--HAEGGP 203 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~-~--~~~~~~ 203 (364)
..++++||-+|+|+ |.++..+++. +|+++|.+++..+.+++. +...+ +...+... . ......
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~---------Ga~~~-i~~~~~~~~~~~~~~~~g 187 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF---------GATAL-AEPEVLAERQGGLQNGRG 187 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc---------CCcEe-cCchhhHHHHHHHhCCCC
Confidence 35899999998764 4455555555 489999999888777652 11110 00001000 0 011235
Q ss_pred eeEEEEccChHHHHHHHHhccCCCcEEEEEE
Q psy7830 204 YDVIFFGAGTTEVSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 204 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~ 234 (364)
+|+|+-............+.|+++|++++.-
T Consensus 188 ~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 188 VDVALEFSGATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CCEEEECCCChHHHHHHHHHhcCCCEEEEec
Confidence 8999876655667788899999999988643
No 296
>KOG1099|consensus
Probab=94.21 E-value=0.075 Score=48.58 Aligned_cols=87 Identities=18% Similarity=0.164 Sum_probs=62.1
Q ss_pred CCEEEEECCCccHHHHHHHcc-------------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC---
Q psy7830 135 GSRVLDIGSGQGYMATAKEWL-------------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH--- 198 (364)
Q Consensus 135 g~~VLDiGcGsG~~a~~la~~-------------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~--- 198 (364)
-.+|.|+++.+|..+..+++. .|++||+.+-+ ..+.|..+++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma----------------PI~GV~qlq~DIT~~stae 105 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA----------------PIEGVIQLQGDITSASTAE 105 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC----------------ccCceEEeecccCCHhHHH
Confidence 357999999999999888875 39999986432 1356888889987531
Q ss_pred -----CCCCCeeEEEEccCh-----HH------------HHHHHHhccCCCcEEEEEEcCC
Q psy7830 199 -----AEGGPYDVIFFGAGT-----TE------------VSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 199 -----~~~~~fD~Ii~~~~~-----~~------------l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
+..++.|+|+++++- |. .+.....+|||||.+|.-+...
T Consensus 106 ~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg 166 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRG 166 (294)
T ss_pred HHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhcc
Confidence 234589999998664 21 1234457899999999766443
No 297
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=94.18 E-value=0.26 Score=47.09 Aligned_cols=83 Identities=18% Similarity=0.191 Sum_probs=56.7
Q ss_pred CCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830 133 QNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI 207 (364)
Q Consensus 133 ~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I 207 (364)
.++++||-+|||. |.++..+++. .|+++|.++..++.+.... -+ |.... ....+|+|
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~-----------~i-----~~~~~--~~~g~Dvv 204 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE-----------VL-----DPEKD--PRRDYRAI 204 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc-----------cc-----Chhhc--cCCCCCEE
Confidence 4678899999875 6666777765 5777898887766554310 01 10000 12468999
Q ss_pred EEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 208 FFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 208 i~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
+-.......+....+.|++||++++.
T Consensus 205 id~~G~~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 205 YDASGDPSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred EECCCCHHHHHHHHHhhhcCcEEEEE
Confidence 97776666778889999999999864
No 298
>KOG2360|consensus
Probab=93.81 E-value=0.13 Score=50.41 Aligned_cols=101 Identities=14% Similarity=0.026 Sum_probs=70.4
Q ss_pred ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHH
Q psy7830 100 FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNI 174 (364)
Q Consensus 100 ~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~ 174 (364)
..|....+.+++-.+- ..+ ..|. ..+|.+|+|.+|.+|..|.+++.. +++|+|.+....+..++.+
T Consensus 188 ~ly~~g~~ilqd~asc----lpA---~ll~--p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l 258 (413)
T KOG2360|consen 188 ELYKNGKFILQDKASC----LPA---HLLD--PRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLL 258 (413)
T ss_pred cccccCceEEechhhc----chh---hhcC--CCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHH
Confidence 3566666666654332 222 2333 578899999999999999988876 9999999999999888887
Q ss_pred HhcCCCCCCCCCEEEEEcCCCCCCC--CCCCeeEEEEccChH
Q psy7830 175 KISRPDLLQSKTLEFILKDARWGHA--EGGPYDVIFFGAGTT 214 (364)
Q Consensus 175 ~~~~~~~l~~~~v~~~~~D~~~~~~--~~~~fD~Ii~~~~~~ 214 (364)
.. .+..+++...+|+..... .....-.|+++.+|+
T Consensus 259 ~~-----ag~~~~~~~~~df~~t~~~~~~~~v~~iL~DpscS 295 (413)
T KOG2360|consen 259 KI-----AGVSIVESVEGDFLNTATPEKFRDVTYILVDPSCS 295 (413)
T ss_pred HH-----cCCCccccccccccCCCCcccccceeEEEeCCCCC
Confidence 76 334577777888876421 113345677776664
No 299
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.78 E-value=0.37 Score=48.36 Aligned_cols=85 Identities=12% Similarity=0.055 Sum_probs=57.0
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI 207 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I 207 (364)
..+|++|+-+|||+ |......++. +|+.+|.++.....|++ .+. .... ..+. -..+|+|
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~---------~G~---~~~~--~~e~---v~~aDVV 261 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM---------EGY---EVMT--MEEA---VKEGDIF 261 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh---------cCC---EEcc--HHHH---HcCCCEE
Confidence 46899999999997 5445545544 89999999988777654 121 1111 1111 1357999
Q ss_pred EEccChHHHHH-HHHhccCCCcEEEEE
Q psy7830 208 FFGAGTTEVSK-TILSQLKPNGRIVAP 233 (364)
Q Consensus 208 i~~~~~~~l~~-~l~~~LkpGG~Lvi~ 233 (364)
+.......++. ...+.+|+||+++..
T Consensus 262 I~atG~~~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 262 VTTTGNKDIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred EECCCCHHHHHHHHHhcCCCCcEEEEe
Confidence 87766666555 458999999988754
No 300
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=93.59 E-value=0.095 Score=50.04 Aligned_cols=67 Identities=19% Similarity=0.135 Sum_probs=49.9
Q ss_pred EEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCC-C-CeeEEEEcc
Q psy7830 137 RVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEG-G-PYDVIFFGA 211 (364)
Q Consensus 137 ~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~-~-~fD~Ii~~~ 211 (364)
+++|+.||.|.++..+... .|.++|+++.+.+.-+.|. + ....+|+....... . .+|+++...
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~----------~--~~~~~Di~~~~~~~l~~~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANF----------P--EVICGDITEIDPSDLPKDVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHH----------T--EEEESHGGGCHHHHHHHT-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhcc----------c--ccccccccccccccccccceEEEecc
Confidence 7999999999999888877 8889999999998888886 2 67888887654221 2 599999988
Q ss_pred ChHH
Q psy7830 212 GTTE 215 (364)
Q Consensus 212 ~~~~ 215 (364)
+|+.
T Consensus 70 PCQ~ 73 (335)
T PF00145_consen 70 PCQG 73 (335)
T ss_dssp --TT
T ss_pred CCce
Confidence 8853
No 301
>PTZ00357 methyltransferase; Provisional
Probab=93.32 E-value=0.36 Score=50.73 Aligned_cols=93 Identities=17% Similarity=0.085 Sum_probs=61.0
Q ss_pred EEEEECCCccHHHHHHHcc--------eEEEEeCCHHHHHHHHHHHHh--cCCC--CCCCCCEEEEEcCCCCCCCC----
Q psy7830 137 RVLDIGSGQGYMATAKEWL--------SSVRQLLLPETLNNSLKNIKI--SRPD--LLQSKTLEFILKDARWGHAE---- 200 (364)
Q Consensus 137 ~VLDiGcGsG~~a~~la~~--------~V~~vDis~~~l~~a~~~~~~--~~~~--~l~~~~v~~~~~D~~~~~~~---- 200 (364)
.|+-+|+|-|-+.....+. +|++||.++..+.....+... ...+ ..-...|+++..|++.+...
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 4899999999876444333 899999997755455444322 1100 00013699999999876432
Q ss_pred -------CCCeeEEEE--------ccChHHHHHHHHhccCC----CcE
Q psy7830 201 -------GGPYDVIFF--------GAGTTEVSKTILSQLKP----NGR 229 (364)
Q Consensus 201 -------~~~fD~Ii~--------~~~~~~l~~~l~~~Lkp----GG~ 229 (364)
.+++|+|++ |-..++.+..+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 136999986 33345677788888886 786
No 302
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=93.25 E-value=0.63 Score=45.33 Aligned_cols=93 Identities=20% Similarity=0.119 Sum_probs=59.0
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEcCCCC-C--CCCCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILKDARW-G--HAEGG 202 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~D~~~-~--~~~~~ 202 (364)
+++|++||-.|||. |..+..+++. +|+++|.++...+.+++. +.+. +.....|... . .....
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~---------Ga~~~i~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF---------GATHTVNSSGTDPVEAIRALTGGF 244 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc---------CCceEEcCCCcCHHHHHHHHhCCC
Confidence 67899999998764 5555666665 499999999988887542 2111 1111111100 0 01123
Q ss_pred CeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
.+|+|+-............+.+++||++++.
T Consensus 245 g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 245 GADVVIDAVGRPETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred CCCEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 5899986655555667788899999998863
No 303
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=93.25 E-value=0.33 Score=47.38 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=50.9
Q ss_pred ccCCCceecC-CCccChHHHHHH--------HHHHHhccCCC-CCEEEEECCCccHHHHHHHcc------------eEEE
Q psy7830 102 FCDIPYAFAN-QVVMEPPSYIAR--------CLEQLVDHLQN-GSRVLDIGSGQGYMATAKEWL------------SSVR 159 (364)
Q Consensus 102 y~d~~l~ig~-g~~~s~P~~~a~--------~l~~L~~~l~~-g~~VLDiGcGsG~~a~~la~~------------~V~~ 159 (364)
|......||. |-.+++|.+... +++.+.+.-.| .-.++|+|.|.|.++..+++. ++..
T Consensus 35 YYs~~~~~G~~GDFiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~i 114 (370)
T COG1565 35 YYSSAVKIGRKGDFITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYI 114 (370)
T ss_pred ccccchhccccCCeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEE
Confidence 3333455653 456677765533 33333332233 357999999999999877654 8899
Q ss_pred EeCCHHHHHHHHHHHHh
Q psy7830 160 QLLLPETLNNSLKNIKI 176 (364)
Q Consensus 160 vDis~~~l~~a~~~~~~ 176 (364)
||+|+...+.=+++++.
T Consensus 115 iE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 115 IEPSPELRARQKETLKA 131 (370)
T ss_pred EecCHHHHHHHHHHHhc
Confidence 99999998888887765
No 304
>KOG1253|consensus
Probab=93.21 E-value=0.091 Score=52.99 Aligned_cols=101 Identities=15% Similarity=0.135 Sum_probs=79.6
Q ss_pred CCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC----CCC
Q psy7830 132 LQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA----EGG 202 (364)
Q Consensus 132 l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~----~~~ 202 (364)
..++-+|||.=|++|.-++..++. .|++-|.++..++..++|++.|. . .+.++....|+..... ...
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~---v-~~ive~~~~DA~~lM~~~~~~~~ 182 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG---V-EDIVEPHHSDANVLMYEHPMVAK 182 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC---c-hhhcccccchHHHHHHhcccccc
Confidence 356788999999999999888876 99999999999999999998753 1 2356777778654321 135
Q ss_pred CeeEEEEcc--ChHHHHHHHHhccCCCcEEEEEEcC
Q psy7830 203 PYDVIFFGA--GTTEVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 203 ~fD~Ii~~~--~~~~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
.||+|-.+. ....+++...+.++.||.|.++..+
T Consensus 183 ~FDvIDLDPyGs~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 183 FFDVIDLDPYGSPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred ccceEecCCCCCccHHHHHHHHHhhcCCEEEEEecc
Confidence 799998763 3456888999999999999998755
No 305
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=93.08 E-value=0.24 Score=40.56 Aligned_cols=83 Identities=20% Similarity=0.128 Sum_probs=57.8
Q ss_pred CccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC------CCCCCCeeEEEEccChH
Q psy7830 144 GQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG------HAEGGPYDVIFFGAGTT 214 (364)
Q Consensus 144 GsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~------~~~~~~fD~Ii~~~~~~ 214 (364)
|-|..+..+++. +|+++|.++..++.+++. +.. .++..+-.+. ......+|+|+-.....
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~---------Ga~--~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~ 69 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL---------GAD--HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSG 69 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT---------TES--EEEETTTSSHHHHHHHHTTTSSEEEEEESSSSH
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh---------ccc--ccccccccccccccccccccccceEEEEecCcH
Confidence 357788888877 999999999999888762 211 1122211110 11124799999888778
Q ss_pred HHHHHHHhccCCCcEEEEEEcCC
Q psy7830 215 EVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 215 ~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
..++...+.|+++|++++.-...
T Consensus 70 ~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 70 DTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHHhccCCEEEEEEccC
Confidence 88999999999999999855443
No 306
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=93.05 E-value=0.3 Score=47.95 Aligned_cols=93 Identities=20% Similarity=0.130 Sum_probs=59.1
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEcCCCC-CC-CCCCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILKDARW-GH-AEGGP 203 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~D~~~-~~-~~~~~ 203 (364)
+++|++||-.|+|. |.++..+++. +|+++|.++...+.+++. +.+.+ .....|..+ .. ...+.
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~---------Ga~~~i~~~~~~~~~~i~~~~~~g 259 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL---------GATATVNAGDPNAVEQVRELTGGG 259 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc---------CCceEeCCCchhHHHHHHHHhCCC
Confidence 67899999999764 4555556655 599999999988887642 11111 111111100 00 01236
Q ss_pred eeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 204 YDVIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 204 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
+|+|+-............+.|++||++++.
T Consensus 260 ~d~vid~~G~~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 260 VDYAFEMAGSVPALETAYEITRRGGTTVTA 289 (371)
T ss_pred CCEEEECCCChHHHHHHHHHHhcCCEEEEE
Confidence 899987655556777788999999998864
No 307
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=92.86 E-value=0.52 Score=46.13 Aligned_cols=92 Identities=18% Similarity=0.211 Sum_probs=53.5
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE-cCCCCCCCCCCCeeE
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL-KDARWGHAEGGPYDV 206 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~-~D~~~~~~~~~~fD~ 206 (364)
+++|++||-.|+|. |.++..+++. +|++++.++.....+.+. ++.+. ++. .+........+.+|+
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~--------~Ga~~--vi~~~~~~~~~~~~~~~D~ 250 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINR--------LGADS--FLVSTDPEKMKAAIGTMDY 250 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHh--------CCCcE--EEcCCCHHHHHhhcCCCCE
Confidence 46899999998864 5555666665 788888776543322222 12111 111 110000000125899
Q ss_pred EEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 207 IFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 207 Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
|+-.......+....+.|++||+++..
T Consensus 251 vid~~g~~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 251 IIDTVSAVHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred EEECCCCHHHHHHHHHHhcCCcEEEEe
Confidence 986655445667788999999998864
No 308
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.85 E-value=0.16 Score=49.19 Aligned_cols=67 Identities=12% Similarity=0.027 Sum_probs=49.4
Q ss_pred EEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC-CCCeeEEEEccCh
Q psy7830 138 VLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE-GGPYDVIFFGAGT 213 (364)
Q Consensus 138 VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~-~~~fD~Ii~~~~~ 213 (364)
|+|+.||.|.++.-+.+. .+.++|+++.+++.-+.|.. + .+..+|+.+.... ...+|+++...+|
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~----------~-~~~~~Di~~~~~~~~~~~dvl~gg~PC 69 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG----------N-KVPFGDITKISPSDIPDFDILLGGFPC 69 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC----------C-CCCccChhhhhhhhCCCcCEEEecCCC
Confidence 689999999999888766 66789999999998888752 2 3345666654321 2358999888777
Q ss_pred HH
Q psy7830 214 TE 215 (364)
Q Consensus 214 ~~ 215 (364)
+.
T Consensus 70 q~ 71 (315)
T TIGR00675 70 QP 71 (315)
T ss_pred cc
Confidence 53
No 309
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=92.68 E-value=0.56 Score=45.60 Aligned_cols=71 Identities=20% Similarity=0.172 Sum_probs=53.3
Q ss_pred CCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCC--C-CeeEEE
Q psy7830 135 GSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEG--G-PYDVIF 208 (364)
Q Consensus 135 g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~--~-~fD~Ii 208 (364)
..+++|+.||.|.+..-+... -+.++|+++.+++.-+.|... -.+...|+....... . .+|+|+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~----------~~~~~~di~~~~~~~~~~~~~Dvli 72 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH----------GDIILGDIKELDGEALRKSDVDVLI 72 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC----------CceeechHhhcChhhccccCCCEEE
Confidence 458999999999999877776 788899999999988887642 334556655433211 2 789999
Q ss_pred EccChHH
Q psy7830 209 FGAGTTE 215 (364)
Q Consensus 209 ~~~~~~~ 215 (364)
...+|+.
T Consensus 73 gGpPCQ~ 79 (328)
T COG0270 73 GGPPCQD 79 (328)
T ss_pred eCCCCcc
Confidence 9999875
No 310
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=92.58 E-value=0.4 Score=46.10 Aligned_cols=93 Identities=22% Similarity=0.202 Sum_probs=57.5
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc---e-EEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEcCCCCC--CCCCCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL---S-SVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILKDARWG--HAEGGP 203 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~---~-V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~D~~~~--~~~~~~ 203 (364)
+.+|++||-+|+|. |.++..+++. + |++++.+++..+.+++. +.+. +.....+.... ......
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~---------ga~~~i~~~~~~~~~~~~~~~~~~ 231 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL---------GADFVINSGQDDVQEIRELTSGAG 231 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh---------CCCEEEcCCcchHHHHHHHhCCCC
Confidence 67899999998753 3444555555 5 99999999888777542 1111 11111110000 011236
Q ss_pred eeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 204 YDVIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 204 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
+|+|+-............+.|+++|++++.
T Consensus 232 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 232 ADVAIECSGNTAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred CCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 999987665555667778899999998863
No 311
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.50 E-value=0.36 Score=49.71 Aligned_cols=95 Identities=19% Similarity=0.155 Sum_probs=58.7
Q ss_pred CCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE---cCCCC---------
Q psy7830 133 QNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL---KDARW--------- 196 (364)
Q Consensus 133 ~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~---~D~~~--------- 196 (364)
.++.+|+-+|||. |..+..+++. .|+++|.++..++.+++ +.. ..+.+-. ++...
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-lGa--------~~v~v~~~e~g~~~~gYa~~~s~~ 232 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-MGA--------EFLELDFKEEGGSGDGYAKVMSEE 232 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCC--------eEEeccccccccccccceeecCHH
Confidence 3578999999997 4555555555 89999999998777765 211 1111110 00000
Q ss_pred --------CCCCCCCeeEEEEccCh-----HH-HHHHHHhccCCCcEEE-EEEcC
Q psy7830 197 --------GHAEGGPYDVIFFGAGT-----TE-VSKTILSQLKPNGRIV-APVGN 236 (364)
Q Consensus 197 --------~~~~~~~fD~Ii~~~~~-----~~-l~~~l~~~LkpGG~Lv-i~~~~ 236 (364)
.......+|+|+..... +. +.+++.+.+|||+.++ +++..
T Consensus 233 ~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~ 287 (511)
T TIGR00561 233 FIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQ 287 (511)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCC
Confidence 11112469999876622 22 5678899999999988 44433
No 312
>PLN02740 Alcohol dehydrogenase-like
Probab=92.50 E-value=0.79 Score=45.19 Aligned_cols=92 Identities=21% Similarity=0.200 Sum_probs=58.6
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEc--CCCC-CC-CCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILK--DARW-GH-AEG 201 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~--D~~~-~~-~~~ 201 (364)
+++|++||-+|+|+ |..+..+++. +|+++|.+++.++.+++ ++.+. +..... +... .. ...
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~---------~Ga~~~i~~~~~~~~~~~~v~~~~~ 266 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE---------MGITDFINPKDSDKPVHERIREMTG 266 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH---------cCCcEEEecccccchHHHHHHHHhC
Confidence 68899999999864 4555556655 59999999998888864 22111 111100 0100 00 011
Q ss_pred CCeeEEEEccChHHHHHHHHhccCCC-cEEEE
Q psy7830 202 GPYDVIFFGAGTTEVSKTILSQLKPN-GRIVA 232 (364)
Q Consensus 202 ~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi 232 (364)
+.+|+|+-............+.+++| |++++
T Consensus 267 ~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~ 298 (381)
T PLN02740 267 GGVDYSFECAGNVEVLREAFLSTHDGWGLTVL 298 (381)
T ss_pred CCCCEEEECCCChHHHHHHHHhhhcCCCEEEE
Confidence 26999987776666777888889997 98765
No 313
>KOG1227|consensus
Probab=92.42 E-value=0.058 Score=51.17 Aligned_cols=91 Identities=18% Similarity=0.167 Sum_probs=63.4
Q ss_pred CCCEEEEECCCccHHHH-HHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830 134 NGSRVLDIGSGQGYMAT-AKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF 209 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~-~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~ 209 (364)
.+..|.|+-+|-||++. .+... .|+++|.+|..++..+++++.|. . ..+.....+|.+..-+ ....|.|..
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~---V-~~r~~i~~gd~R~~~~-~~~AdrVnL 268 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANN---V-MDRCRITEGDNRNPKP-RLRADRVNL 268 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcc---h-HHHHHhhhccccccCc-cccchheee
Confidence 56889999999999998 55444 99999999999999999998843 1 1344556677655443 456888876
Q ss_pred ccCh--HHHHHHHHhccCCCcE
Q psy7830 210 GAGT--TEVSKTILSQLKPNGR 229 (364)
Q Consensus 210 ~~~~--~~l~~~l~~~LkpGG~ 229 (364)
...- +.--....+.|||.|-
T Consensus 269 GLlPSse~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 269 GLLPSSEQGWPTAIKALKPEGG 290 (351)
T ss_pred ccccccccchHHHHHHhhhcCC
Confidence 5432 2222345677777443
No 314
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=92.21 E-value=1.1 Score=43.59 Aligned_cols=93 Identities=24% Similarity=0.221 Sum_probs=57.6
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEc---CCCCC---CCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILK---DARWG---HAE 200 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~---D~~~~---~~~ 200 (364)
+++|.+||-+|||+ |..+..+++. +|+++|.+++.++.+++ + +... +..... |.... ...
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~-~--------Ga~~~i~~~~~~~~~~~~~~~~~t~ 234 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG-F--------GADLTLNPKDKSAREVKKLIKAFAK 234 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-h--------CCceEecCccccHHHHHHHHHhhcc
Confidence 67899999999965 6666666665 89999999998888754 2 1111 111111 11000 001
Q ss_pred CCCee----EEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 201 GGPYD----VIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 201 ~~~fD----~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
...+| +|+-............+.|++||++++.
T Consensus 235 ~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~ 271 (349)
T TIGR03201 235 ARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVV 271 (349)
T ss_pred cCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEE
Confidence 12344 6665554455667788899999999764
No 315
>KOG2793|consensus
Probab=91.91 E-value=0.92 Score=42.29 Aligned_cols=99 Identities=19% Similarity=0.122 Sum_probs=56.2
Q ss_pred CCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCC--CCCCCCEEEEEcCCCCC---CCCCCC-e
Q psy7830 134 NGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPD--LLQSKTLEFILKDARWG---HAEGGP-Y 204 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~--~l~~~~v~~~~~D~~~~---~~~~~~-f 204 (364)
...+||++|+|+|..++.++.. .|...|+.. .+...+.|...+.-. .++ ..+.+...+-... ..-... |
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g-~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPK-VVENLKFNRDKNNIALNQLG-GSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchh-hHHHHHHhhhhhhhhhhhcC-CceeEEEEecCCcccHhhccCCcc
Confidence 3567999999999888888875 777777643 333433333221100 011 1333333222111 111123 7
Q ss_pred eEEEEccC------hHHHHHHHHhccCCCcEEEEEE
Q psy7830 205 DVIFFGAG------TTEVSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 205 D~Ii~~~~------~~~l~~~l~~~LkpGG~Lvi~~ 234 (364)
|+|++..+ ++.+...++..|..+|.+++..
T Consensus 164 DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 164 DLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred cEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEE
Confidence 88876543 3567888899999988555544
No 316
>PLN02827 Alcohol dehydrogenase-like
Probab=91.83 E-value=1.2 Score=43.95 Aligned_cols=92 Identities=21% Similarity=0.198 Sum_probs=57.0
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEc--CCCCCC--CCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILK--DARWGH--AEG 201 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~--D~~~~~--~~~ 201 (364)
+++|++||-.|+|+ |.+++.+++. .|+++|.++...+.+++ ++.+.+ ..... +..... ...
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~---------lGa~~~i~~~~~~~~~~~~v~~~~~ 261 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT---------FGVTDFINPNDLSEPIQQVIKRMTG 261 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH---------cCCcEEEcccccchHHHHHHHHHhC
Confidence 67899999998754 4444555554 58899999888777754 221111 11100 110000 011
Q ss_pred CCeeEEEEccChHHHHHHHHhccCCC-cEEEE
Q psy7830 202 GPYDVIFFGAGTTEVSKTILSQLKPN-GRIVA 232 (364)
Q Consensus 202 ~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi 232 (364)
+.+|+|+-.......+....+.+++| |++++
T Consensus 262 ~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 262 GGADYSFECVGDTGIATTALQSCSDGWGLTVT 293 (378)
T ss_pred CCCCEEEECCCChHHHHHHHHhhccCCCEEEE
Confidence 26899987666555677788899998 99876
No 317
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=91.79 E-value=0.56 Score=43.70 Aligned_cols=78 Identities=14% Similarity=0.103 Sum_probs=48.2
Q ss_pred CEEEEECCCccHHHHHHHcc------------eEEEEeCCHHHHHHHHHHHHhcCCC-CCCCCCEEEEEcCCCCCCCCCC
Q psy7830 136 SRVLDIGSGQGYMATAKEWL------------SSVRQLLLPETLNNSLKNIKISRPD-LLQSKTLEFILKDARWGHAEGG 202 (364)
Q Consensus 136 ~~VLDiGcGsG~~a~~la~~------------~V~~vDis~~~l~~a~~~~~~~~~~-~l~~~~v~~~~~D~~~~~~~~~ 202 (364)
-+|+|+|+|+|.++..+++. +++.||+||.+.+.-++++.....+ .....+|.. ..+..+.+
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p---- 94 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP---- 94 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS-----
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc----
Confidence 59999999999999887654 7999999999988888877541000 000124555 22332221
Q ss_pred CeeEEEEccChHHHHH
Q psy7830 203 PYDVIFFGAGTTEVSK 218 (364)
Q Consensus 203 ~fD~Ii~~~~~~~l~~ 218 (364)
..-+|++|-.+..++-
T Consensus 95 ~~~~iiaNE~~DAlP~ 110 (252)
T PF02636_consen 95 FPGFIIANELFDALPV 110 (252)
T ss_dssp CCEEEEEESSGGGS--
T ss_pred CCEEEEEeeehhcCce
Confidence 3457888888777653
No 318
>KOG2352|consensus
Probab=91.78 E-value=0.28 Score=49.59 Aligned_cols=101 Identities=18% Similarity=0.174 Sum_probs=71.3
Q ss_pred CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC-------CCC
Q psy7830 132 LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG-------HAE 200 (364)
Q Consensus 132 l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~-------~~~ 200 (364)
...+..+|-+|-|+|.+...+... .+++++++|.+++.|++++.. ....+..+...|.... -.+
T Consensus 293 ~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f-----~q~~r~~V~i~dGl~~~~~~~k~~~~ 367 (482)
T KOG2352|consen 293 LDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGF-----MQSDRNKVHIADGLDFLQRTAKSQQE 367 (482)
T ss_pred ccccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhch-----hhhhhhhhhHhhchHHHHHHhhcccc
Confidence 345667899999999998777655 999999999999999998765 1112445555555422 123
Q ss_pred CCCeeEEEEccC---------------hHHHHHHHHhccCCCcEEEEEEcCC
Q psy7830 201 GGPYDVIFFGAG---------------TTEVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 201 ~~~fD~Ii~~~~---------------~~~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
+..||+++.+.. .+.++..+...|.|-|.+++..-..
T Consensus 368 ~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r 419 (482)
T KOG2352|consen 368 DICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTR 419 (482)
T ss_pred ccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecC
Confidence 467999986421 1235678889999999998866554
No 319
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=91.77 E-value=1 Score=41.68 Aligned_cols=91 Identities=21% Similarity=0.138 Sum_probs=59.0
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc---e-EEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeE
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL---S-SVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDV 206 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~---~-V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~ 206 (364)
+.++.+||-.|||. |..+..+++. + |++++.+++..+.+++.- . ...+.....+ . .....+|+
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g-~-------~~~~~~~~~~---~-~~~~~~d~ 162 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALG-P-------ADPVAADTAD---E-IGGRGADV 162 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcC-C-------Cccccccchh---h-hcCCCCCE
Confidence 67899999998765 5556666655 6 999999988877665431 0 0111100000 0 12346899
Q ss_pred EEEccChHHHHHHHHhccCCCcEEEEEE
Q psy7830 207 IFFGAGTTEVSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 207 Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~ 234 (364)
|+.............+.|+++|+++..-
T Consensus 163 vl~~~~~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 163 VIEASGSPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred EEEccCChHHHHHHHHHhcCCcEEEEEe
Confidence 9876555556778889999999988643
No 320
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=91.74 E-value=0.91 Score=43.52 Aligned_cols=91 Identities=23% Similarity=0.304 Sum_probs=56.9
Q ss_pred CCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEcCCCCCCCCCCCeeEE
Q psy7830 134 NGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILKDARWGHAEGGPYDVI 207 (364)
Q Consensus 134 ~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~D~~~~~~~~~~fD~I 207 (364)
++.+||-.|||. |..+..+++. ++++++.++...+.+++. . .+.+ .....+..........+|+|
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-g--------~~~vi~~~~~~~~~~~~~~~~vd~v 235 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-G--------ADETVNLARDPLAAYAADKGDFDVV 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-C--------CCEEEcCCchhhhhhhccCCCccEE
Confidence 789999988775 5566666655 688999988887765542 1 1111 00000111111112359999
Q ss_pred EEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 208 FFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 208 i~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
+...........+.+.|+++|+++..
T Consensus 236 ld~~g~~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 236 FEASGAPAALASALRVVRPGGTVVQV 261 (339)
T ss_pred EECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 97655455677888999999998863
No 321
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=91.65 E-value=0.3 Score=39.50 Aligned_cols=44 Identities=16% Similarity=0.061 Sum_probs=31.0
Q ss_pred HHHHHHHHHhccCC--CCCEEEEECCCccHHHHHHHcc--eEEEEeCC
Q psy7830 120 YIARCLEQLVDHLQ--NGSRVLDIGSGQGYMATAKEWL--SSVRQLLL 163 (364)
Q Consensus 120 ~~a~~l~~L~~~l~--~g~~VLDiGcGsG~~a~~la~~--~V~~vDis 163 (364)
+.+.++++....-. +.....|+|||+|.+.-.|... .=.|+|.-
T Consensus 42 IAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R 89 (112)
T PF07757_consen 42 IAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYPGWGIDAR 89 (112)
T ss_pred HHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCCccccccc
Confidence 44556665543222 3557999999999999888777 77888864
No 322
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=91.56 E-value=0.93 Score=42.77 Aligned_cols=100 Identities=15% Similarity=0.069 Sum_probs=69.5
Q ss_pred CCCCEEEEECCCccHHHHHHH--cc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCC--CCeeE
Q psy7830 133 QNGSRVLDIGSGQGYMATAKE--WL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEG--GPYDV 206 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la--~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~--~~fD~ 206 (364)
..|..|+-+| -.-..+++++ .+ +|..+|||+..++...+-++. ++.+|++.+.-|..+..+++ ..||+
T Consensus 151 L~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee-----~g~~~ie~~~~Dlr~plpe~~~~kFDv 224 (354)
T COG1568 151 LEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEE-----LGYNNIEAFVFDLRNPLPEDLKRKFDV 224 (354)
T ss_pred cCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHH-----hCccchhheeehhcccChHHHHhhCCe
Confidence 3577899998 3333333333 33 899999999999999998888 56678999999998766553 68999
Q ss_pred EEEccChH-----HHHHHHHhccCCC---cEEEEEEcCCC
Q psy7830 207 IFFGAGTT-----EVSKTILSQLKPN---GRIVAPVGNVW 238 (364)
Q Consensus 207 Ii~~~~~~-----~l~~~l~~~LkpG---G~Lvi~~~~~~ 238 (364)
++.+.+-. .++..-...||-- |++-++.....
T Consensus 225 fiTDPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ress 264 (354)
T COG1568 225 FITDPPETIKALKLFLGRGIATLKGEGCAGYFGITRRESS 264 (354)
T ss_pred eecCchhhHHHHHHHHhccHHHhcCCCccceEeeeecccc
Confidence 88776543 1233333455554 67777665544
No 323
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=91.52 E-value=0.86 Score=39.85 Aligned_cols=93 Identities=20% Similarity=0.178 Sum_probs=56.1
Q ss_pred ECCCccHHHHHHHcc-----eEEE--EeCCHHHHHHH---HHHHHhcCCCCCCCCCEEEE-EcCCCCCCC----CCCCee
Q psy7830 141 IGSGQGYMATAKEWL-----SSVR--QLLLPETLNNS---LKNIKISRPDLLQSKTLEFI-LKDARWGHA----EGGPYD 205 (364)
Q Consensus 141 iGcGsG~~a~~la~~-----~V~~--vDis~~~l~~a---~~~~~~~~~~~l~~~~v~~~-~~D~~~~~~----~~~~fD 205 (364)
+|=|.=.++..+++. .+++ .|...+..+.- .+|++. +...++.+. -.|+..+.. ....||
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~-----L~~~g~~V~~~VDat~l~~~~~~~~~~FD 77 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEE-----LRELGVTVLHGVDATKLHKHFRLKNQRFD 77 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHH-----HhhcCCccccCCCCCcccccccccCCcCC
Confidence 455555566666655 4444 55555554443 355554 222234333 346654432 246899
Q ss_pred EEEEccChH-------------------HHHHHHHhccCCCcEEEEEEcCCC
Q psy7830 206 VIFFGAGTT-------------------EVSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 206 ~Ii~~~~~~-------------------~l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
.|+.|.+.. +++..+.++|+++|.+.++.....
T Consensus 78 rIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~ 129 (166)
T PF10354_consen 78 RIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ 129 (166)
T ss_pred EEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 999886642 245788899999999999987754
No 324
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=91.35 E-value=2.1 Score=40.88 Aligned_cols=92 Identities=22% Similarity=0.207 Sum_probs=58.4
Q ss_pred CCCCCEEEEECC--CccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEc-CCCCC--CCCCC
Q psy7830 132 LQNGSRVLDIGS--GQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILK-DARWG--HAEGG 202 (364)
Q Consensus 132 l~~g~~VLDiGc--GsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~-D~~~~--~~~~~ 202 (364)
+++|++||=.|+ |.|..+..+++. +|++++.+++..+.+++ + +.+.+ ..... +.... ....+
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~-l--------Ga~~vi~~~~~~~~~~~~~~~~~~ 206 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK-L--------GFDVAFNYKTVKSLEETLKKASPD 206 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-c--------CCCEEEeccccccHHHHHHHhCCC
Confidence 688999999984 356666777766 89999999888777754 2 21111 11110 11100 01124
Q ss_pred CeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
.+|+|+-...- .......+.|++||+++..
T Consensus 207 gvdvv~d~~G~-~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 207 GYDCYFDNVGG-EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred CeEEEEECCCH-HHHHHHHHHhCcCcEEEEe
Confidence 69999865544 3457889999999999853
No 325
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=91.27 E-value=1.2 Score=43.50 Aligned_cols=92 Identities=18% Similarity=0.147 Sum_probs=54.6
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI 207 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I 207 (364)
.++|.+||-.|+|. |..+..+++. ++++++.+++....+.+.+ +...+ +...+..........+|+|
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~--------Ga~~~-i~~~~~~~~~~~~~~~D~v 248 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHL--------GADDY-LVSSDAAEMQEAADSLDYI 248 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhc--------CCcEE-ecCCChHHHHHhcCCCcEE
Confidence 36789999887654 4555556655 7888888877655544332 21111 1111110000011358998
Q ss_pred EEccChHHHHHHHHhccCCCcEEEE
Q psy7830 208 FFGAGTTEVSKTILSQLKPNGRIVA 232 (364)
Q Consensus 208 i~~~~~~~l~~~l~~~LkpGG~Lvi 232 (364)
+-............+.|++||+++.
T Consensus 249 id~~g~~~~~~~~~~~l~~~G~iv~ 273 (357)
T PLN02514 249 IDTVPVFHPLEPYLSLLKLDGKLIL 273 (357)
T ss_pred EECCCchHHHHHHHHHhccCCEEEE
Confidence 8765545567778899999999886
No 326
>KOG2078|consensus
Probab=91.24 E-value=0.16 Score=50.39 Aligned_cols=65 Identities=23% Similarity=0.219 Sum_probs=55.8
Q ss_pred cCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC
Q psy7830 131 HLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH 198 (364)
Q Consensus 131 ~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~ 198 (364)
..++|..|.|+.||-|-+++.+++. +|++-|.++++++..+.|+..|. +...+++.+..|+....
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNk---v~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNK---VDPSAIEIFNMDAKDFL 312 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccc---cchhheeeecccHHHHh
Confidence 4689999999999999999998887 99999999999999999998765 55556888888876543
No 327
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=91.03 E-value=0.84 Score=44.11 Aligned_cols=93 Identities=16% Similarity=0.122 Sum_probs=56.1
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc---e-EEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEcCCCCC--CCCCCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL---S-SVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILKDARWG--HAEGGP 203 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~---~-V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~D~~~~--~~~~~~ 203 (364)
+.+|.+||-.|+|+ |..+..+++. + |++++.+++..+.+++ + +... +.....+.... ......
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~--------Ga~~~i~~~~~~~~~~~~~~~~~~ 228 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS-L--------GAMQTFNSREMSAPQIQSVLRELR 228 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH-c--------CCceEecCcccCHHHHHHHhcCCC
Confidence 56899999998764 4455555555 4 7899999988877643 2 1111 11111110000 011235
Q ss_pred ee-EEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 204 YD-VIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 204 fD-~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
+| +|+-.......+....+.|++||++++.
T Consensus 229 ~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 229 FDQLILETAGVPQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred CCeEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 77 6665555456778888999999998864
No 328
>KOG2798|consensus
Probab=90.93 E-value=0.9 Score=43.58 Aligned_cols=51 Identities=22% Similarity=0.148 Sum_probs=37.9
Q ss_pred HHHHHHHHHhccCCC------CCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHH
Q psy7830 120 YIARCLEQLVDHLQN------GSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNS 170 (364)
Q Consensus 120 ~~a~~l~~L~~~l~~------g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a 170 (364)
+...+++.|..+..+ .-+||--|||.|.++..++.. .+-|-|.|--|+-..
T Consensus 130 ~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S 188 (369)
T KOG2798|consen 130 LYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICS 188 (369)
T ss_pred hhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHH
Confidence 445667777654443 458999999999999999988 777778877765443
No 329
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=90.89 E-value=1.7 Score=42.64 Aligned_cols=93 Identities=16% Similarity=0.129 Sum_probs=58.3
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEE--cCCCC-CC-CCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFIL--KDARW-GH-AEG 201 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~--~D~~~-~~-~~~ 201 (364)
+++|++||-.|||. |.+++.+++. +|+++|.+++..+.+++. +.+. +.... .+... .. ...
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~---------Ga~~~i~~~~~~~~~~~~v~~~~~ 253 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL---------GATDCVNPNDYDKPIQEVIVEITD 253 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh---------CCCeEEcccccchhHHHHHHHHhC
Confidence 67899999999864 5555666665 699999999988888552 1111 11110 00000 00 011
Q ss_pred CCeeEEEEccChHHHHHHHHhccCCC-cEEEEE
Q psy7830 202 GPYDVIFFGAGTTEVSKTILSQLKPN-GRIVAP 233 (364)
Q Consensus 202 ~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi~ 233 (364)
+.+|+|+-............+.+++| |++++.
T Consensus 254 ~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~ 286 (368)
T TIGR02818 254 GGVDYSFECIGNVNVMRAALECCHKGWGESIII 286 (368)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEE
Confidence 36899987655556677788899886 987754
No 330
>PRK10458 DNA cytosine methylase; Provisional
Probab=90.72 E-value=0.82 Score=46.65 Aligned_cols=40 Identities=15% Similarity=0.094 Sum_probs=34.6
Q ss_pred CCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHH
Q psy7830 135 GSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNI 174 (364)
Q Consensus 135 g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~ 174 (364)
..+++|+.||.|.++..+-.. .|.++|+++.+.+.-+.|.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence 468999999999999888666 7788999999988888775
No 331
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=90.69 E-value=1.2 Score=43.31 Aligned_cols=92 Identities=15% Similarity=0.126 Sum_probs=59.4
Q ss_pred CCCCCEEEEECCC--ccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEc-CCCCCC--CCCC
Q psy7830 132 LQNGSRVLDIGSG--QGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILK-DARWGH--AEGG 202 (364)
Q Consensus 132 l~~g~~VLDiGcG--sG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~-D~~~~~--~~~~ 202 (364)
+++|++||-.|++ .|.++..+++. +|++++.+++..+.+++.+. .+.+ ..... +..... ...+
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lG--------a~~vi~~~~~~~~~~~i~~~~~~ 227 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLG--------FDEAFNYKEEPDLDAALKRYFPE 227 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcC--------CCEEEECCCcccHHHHHHHHCCC
Confidence 6789999999983 56677777776 89999999888777764332 1111 11111 111000 0123
Q ss_pred CeeEEEEccChHHHHHHHHhccCCCcEEEE
Q psy7830 203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVA 232 (364)
Q Consensus 203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 232 (364)
.+|+|+-...- .......+.|++||++++
T Consensus 228 gvD~v~d~vG~-~~~~~~~~~l~~~G~iv~ 256 (348)
T PLN03154 228 GIDIYFDNVGG-DMLDAALLNMKIHGRIAV 256 (348)
T ss_pred CcEEEEECCCH-HHHHHHHHHhccCCEEEE
Confidence 68999865543 467788899999999885
No 332
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=90.63 E-value=2.3 Score=38.66 Aligned_cols=105 Identities=17% Similarity=0.149 Sum_probs=65.5
Q ss_pred HHHHHHHhccCCCCCEEEEECCCccH--HHHHHH--cc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCC-CCEEEEEc
Q psy7830 122 ARCLEQLVDHLQNGSRVLDIGSGQGY--MATAKE--WL----SSVRQLLLPETLNNSLKNIKISRPDLLQS-KTLEFILK 192 (364)
Q Consensus 122 a~~l~~L~~~l~~g~~VLDiGcGsG~--~a~~la--~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~-~~v~~~~~ 192 (364)
+..+..|.. =..-..+++.+|+-|. .++.|+ .. ++++|-.+++.+...++.+.. .+. +-++|+.+
T Consensus 30 aEfISAlAA-G~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~-----~~~~~~vEfvvg 103 (218)
T PF07279_consen 30 AEFISALAA-GWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGE-----AGLSDVVEFVVG 103 (218)
T ss_pred HHHHHHHhc-cccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhh-----ccccccceEEec
Confidence 445555541 1234567888665432 233333 22 899999998888888887765 222 34689988
Q ss_pred CCC-CCCCCCCCeeEEEEccChHHHHHHHHhccC--CCcEEEE
Q psy7830 193 DAR-WGHAEGGPYDVIFFGAGTTEVSKTILSQLK--PNGRIVA 232 (364)
Q Consensus 193 D~~-~~~~~~~~fD~Ii~~~~~~~l~~~l~~~Lk--pGG~Lvi 232 (364)
+.. .........|+++.++-.+.....+.+.++ |.|-+++
T Consensus 104 ~~~e~~~~~~~~iDF~vVDc~~~d~~~~vl~~~~~~~~GaVVV 146 (218)
T PF07279_consen 104 EAPEEVMPGLKGIDFVVVDCKREDFAARVLRAAKLSPRGAVVV 146 (218)
T ss_pred CCHHHHHhhccCCCEEEEeCCchhHHHHHHHHhccCCCceEEE
Confidence 853 334444679999999888776655555554 4565554
No 333
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=90.50 E-value=0.95 Score=44.18 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=15.4
Q ss_pred CCCCEEEEECCCccHHHHHHHc
Q psy7830 133 QNGSRVLDIGSGQGYMATAKEW 154 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la~ 154 (364)
....+|+|+||.+|..++.+..
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~ 36 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVS 36 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHH
T ss_pred CCceEEEecCCCCCccHHHHHH
Confidence 3456899999999999876643
No 334
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=90.15 E-value=4.7 Score=35.12 Aligned_cols=106 Identities=23% Similarity=0.204 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC
Q psy7830 118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA 194 (364)
Q Consensus 118 P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~ 194 (364)
..+...+++.+.+...++.+|+=|||=+-+..+.-... +++..|+|...-.. + .+ .|+.-|.
T Consensus 9 ~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~-------------~-~~-~F~fyD~ 73 (162)
T PF10237_consen 9 DETAEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQF-------------G-GD-EFVFYDY 73 (162)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhc-------------C-Cc-ceEECCC
Confidence 34556666666654567789999999987777665112 89999999554221 1 12 3444454
Q ss_pred CCC---CCC-CCCeeEEEEccChH--H----HHHHHHhccCCCcEEEEEEcCCC
Q psy7830 195 RWG---HAE-GGPYDVIFFGAGTT--E----VSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 195 ~~~---~~~-~~~fD~Ii~~~~~~--~----l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
... +.. .++||+|+++.++- . ....+..++|+++.+++..+...
T Consensus 74 ~~p~~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~~ 127 (162)
T PF10237_consen 74 NEPEELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCTGEEM 127 (162)
T ss_pred CChhhhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEecHHHH
Confidence 321 111 36899999998872 2 34566667789999998887643
No 335
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=89.95 E-value=2.7 Score=39.29 Aligned_cols=97 Identities=10% Similarity=0.050 Sum_probs=55.5
Q ss_pred CCEEEEECCCccHHHHHHHcc---------eEEEEeCCH--------------------------HHHHHHHHHHHhcCC
Q psy7830 135 GSRVLDIGSGQGYMATAKEWL---------SSVRQLLLP--------------------------ETLNNSLKNIKISRP 179 (364)
Q Consensus 135 g~~VLDiGcGsG~~a~~la~~---------~V~~vDis~--------------------------~~l~~a~~~~~~~~~ 179 (364)
...|+|.||-.|..++.++.. ++++.|.=+ ..++..++|+.+..
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g- 153 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG- 153 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT-
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC-
Confidence 347999999999877654321 688887421 12333444444311
Q ss_pred CCCCCCCEEEEEcCCCCCCCC--CCCeeEEEEccChH----HHHHHHHhccCCCcEEEEEE
Q psy7830 180 DLLQSKTLEFILKDARWGHAE--GGPYDVIFFGAGTT----EVSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 180 ~~l~~~~v~~~~~D~~~~~~~--~~~fD~Ii~~~~~~----~l~~~l~~~LkpGG~Lvi~~ 234 (364)
+..++++++.|...+..+. ..++-++..+..+. ..++.+...|.|||++++-.
T Consensus 154 --l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~DD 212 (248)
T PF05711_consen 154 --LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDD 212 (248)
T ss_dssp --TSSTTEEEEES-HHHHCCC-TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred --CCcccEEEECCcchhhhccCCCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeC
Confidence 2236899999997654432 24566666665543 46789999999999999643
No 336
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=89.67 E-value=2.9 Score=40.92 Aligned_cols=93 Identities=17% Similarity=0.152 Sum_probs=57.1
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEc--CCCCCC--CCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILK--DARWGH--AEG 201 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~--D~~~~~--~~~ 201 (364)
+++|++||-+|+|. |.++..+++. +|+++|.+++.++.+++ + +.+. +..... +..... ...
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~-l--------Ga~~~i~~~~~~~~~~~~v~~~~~ 254 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK-F--------GATDCVNPKDHDKPIQQVLVEMTD 254 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-c--------CCCEEEcccccchHHHHHHHHHhC
Confidence 67899999998753 4455555554 59999999998887754 2 2111 111111 010000 012
Q ss_pred CCeeEEEEccChHHHHHHHHhccCCC-cEEEEE
Q psy7830 202 GPYDVIFFGAGTTEVSKTILSQLKPN-GRIVAP 233 (364)
Q Consensus 202 ~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi~ 233 (364)
+.+|+|+-............+.|+++ |+++..
T Consensus 255 ~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 255 GGVDYTFECIGNVKVMRAALEACHKGWGTSVII 287 (368)
T ss_pred CCCcEEEECCCChHHHHHHHHhhccCCCeEEEE
Confidence 36899987655455677788899987 888753
No 337
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=89.64 E-value=3.6 Score=39.11 Aligned_cols=92 Identities=22% Similarity=0.225 Sum_probs=57.8
Q ss_pred CCCCCEEEEECCC-ccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEcCCCCCCCCCCCeeE
Q psy7830 132 LQNGSRVLDIGSG-QGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILKDARWGHAEGGPYDV 206 (364)
Q Consensus 132 l~~g~~VLDiGcG-sG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~D~~~~~~~~~~fD~ 206 (364)
+.++.+||-.||| .|..+..+++. +|++++.+++..+.+++ ... ..+ .....+.... ..+.+|+
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~-~g~--------~~~~~~~~~~~~~~--~~~~~d~ 228 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARK-LGA--------DEVVDSGAELDEQA--AAGGADV 228 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-hCC--------cEEeccCCcchHHh--ccCCCCE
Confidence 6788999999886 45555555555 89999999988777643 211 111 0000000000 1236899
Q ss_pred EEEccChHHHHHHHHhccCCCcEEEEEE
Q psy7830 207 IFFGAGTTEVSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 207 Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~ 234 (364)
++.............+.|+++|+++...
T Consensus 229 vi~~~~~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 229 ILVTVVSGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred EEECCCcHHHHHHHHHhcccCCEEEEEC
Confidence 9865454566778889999999888653
No 338
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=89.60 E-value=1 Score=44.09 Aligned_cols=93 Identities=18% Similarity=0.183 Sum_probs=56.5
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEcCC--CC-CC-CCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILKDA--RW-GH-AEG 201 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~D~--~~-~~-~~~ 201 (364)
+++|.+||-+|+|+ |..+..+++. +|+++|.++...+.+++ + +...+ .....+. .. .. ...
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~-~--------ga~~~i~~~~~~~~~~~~~~~~~~ 252 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE-F--------GATDFINPKDSDKPVSEVIREMTG 252 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-c--------CCCcEeccccccchHHHHHHHHhC
Confidence 67899999998753 4444555555 68999999988887754 2 11111 1111000 00 00 011
Q ss_pred CCeeEEEEccChHHHHHHHHhccCCC-cEEEEE
Q psy7830 202 GPYDVIFFGAGTTEVSKTILSQLKPN-GRIVAP 233 (364)
Q Consensus 202 ~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi~ 233 (364)
..+|+|+-.......+....+.++++ |+++..
T Consensus 253 ~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 253 GGVDYSFECTGNADLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred CCCCEEEECCCChHHHHHHHHhcccCCCEEEEE
Confidence 36899986655456677788899885 888764
No 339
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=89.49 E-value=1.1 Score=44.60 Aligned_cols=91 Identities=21% Similarity=0.173 Sum_probs=56.7
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc---CCCC-C--CCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK---DARW-G--HAE 200 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~---D~~~-~--~~~ 200 (364)
+++|++||-.|+|+ |.++..+++. .|+.+|.+++.++.+++ ++.. .+... +... . ...
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~---------~Ga~--~v~~~~~~~~~~~v~~~~~ 251 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS---------FGCE--TVDLSKDATLPEQIEQILG 251 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH---------cCCe--EEecCCcccHHHHHHHHcC
Confidence 67899998887764 4455555654 46677888888887765 2221 11111 1100 0 011
Q ss_pred CCCeeEEEEccChH--------------HHHHHHHhccCCCcEEEEE
Q psy7830 201 GGPYDVIFFGAGTT--------------EVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 201 ~~~fD~Ii~~~~~~--------------~l~~~l~~~LkpGG~Lvi~ 233 (364)
...+|+|+-..... ..++...+.+++||++++.
T Consensus 252 ~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 252 EPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIP 298 (393)
T ss_pred CCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEe
Confidence 23589998655543 4678888999999999873
No 340
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=89.43 E-value=2.6 Score=39.92 Aligned_cols=85 Identities=22% Similarity=0.288 Sum_probs=55.8
Q ss_pred CCCCCEEEEECCCccHHHHHH---Hcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCee
Q psy7830 132 LQNGSRVLDIGSGQGYMATAK---EWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYD 205 (364)
Q Consensus 132 l~~g~~VLDiGcGsG~~a~~l---a~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD 205 (364)
++++.+||-.|+ |.++..+ ++. +|++++.+++..+.+++ +.. ..+... ... .....+|
T Consensus 153 ~~~g~~vlV~g~--g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~-~g~--------~~~~~~----~~~-~~~~~~d 216 (319)
T cd08242 153 ITPGDKVAVLGD--GKLGLLIAQVLALTGPDVVLVGRHSEKLALARR-LGV--------ETVLPD----EAE-SEGGGFD 216 (319)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-cCC--------cEEeCc----ccc-ccCCCCC
Confidence 678899999875 4455444 433 88999999988888776 211 111111 111 1235699
Q ss_pred EEEEccChHHHHHHHHhccCCCcEEEE
Q psy7830 206 VIFFGAGTTEVSKTILSQLKPNGRIVA 232 (364)
Q Consensus 206 ~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 232 (364)
+|+-...-........+.|+++|+++.
T Consensus 217 ~vid~~g~~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 217 VVVEATGSPSGLELALRLVRPRGTVVL 243 (319)
T ss_pred EEEECCCChHHHHHHHHHhhcCCEEEE
Confidence 998765445566778889999999986
No 341
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=89.33 E-value=2.2 Score=40.68 Aligned_cols=91 Identities=18% Similarity=0.175 Sum_probs=57.7
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc---e-EEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC----CCCCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL---S-SVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG----HAEGG 202 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~---~-V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~----~~~~~ 202 (364)
+.++.+||-+|+|. |..++.+++. + |++++.+++..+.+++. +.. .++..+-... .....
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~---------g~~--~~~~~~~~~~~~~~~~~~~ 225 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL---------GAT--ETVDPSREDPEAQKEDNPY 225 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh---------CCe--EEecCCCCCHHHHHHhcCC
Confidence 67889999998652 4455555555 5 88899998887776432 111 1221111110 11234
Q ss_pred CeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
.+|+|+.............+.|+++|+++..
T Consensus 226 ~vd~v~~~~~~~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 226 GFDVVIEATGVPKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred CCcEEEECCCChHHHHHHHHHHhcCCEEEEE
Confidence 6999997655456777888999999998753
No 342
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=89.16 E-value=3.7 Score=40.02 Aligned_cols=101 Identities=21% Similarity=0.169 Sum_probs=64.0
Q ss_pred HHHHHhccCCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc----CC
Q psy7830 124 CLEQLVDHLQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK----DA 194 (364)
Q Consensus 124 ~l~~L~~~l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~----D~ 194 (364)
.+..+. +++|++|.-+|||. |..++.-|+. +++++|+++..++.|++- + -.+++.. |+
T Consensus 177 v~nta~--v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f---------G--AT~~vn~~~~~~v 243 (366)
T COG1062 177 VVNTAK--VEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF---------G--ATHFVNPKEVDDV 243 (366)
T ss_pred hhhccc--CCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc---------C--CceeecchhhhhH
Confidence 444444 78999999999996 4444444443 999999999999999873 1 1222222 11
Q ss_pred CCC--CCCCCCeeEEEEccChHHHHHHHHhccCCCcEEEEEEcCC
Q psy7830 195 RWG--HAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 195 ~~~--~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
-+. ...++..|.++-...-...++...+.+.++|..++.--..
T Consensus 244 v~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~ 288 (366)
T COG1062 244 VEAIVELTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVAG 288 (366)
T ss_pred HHHHHHhcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecCC
Confidence 110 0112356776655555557778888888899887754443
No 343
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=89.08 E-value=2 Score=42.40 Aligned_cols=91 Identities=20% Similarity=0.185 Sum_probs=53.4
Q ss_pred CCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHH-HHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830 133 QNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPET-LNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI 207 (364)
Q Consensus 133 ~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~-l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I 207 (364)
++|++||-.|+|. |..+..+++. +|++++.+++. .+.+++ ++.+.+ +...+........+.+|+|
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~---------lGa~~~-i~~~~~~~v~~~~~~~D~v 246 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDR---------LGADSF-LVTTDSQKMKEAVGTMDFI 246 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHh---------CCCcEE-EcCcCHHHHHHhhCCCcEE
Confidence 5789999998864 4555556665 88888887543 334322 222111 1001100000001258999
Q ss_pred EEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 208 FFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 208 i~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
+-............+.+++||+++..
T Consensus 247 id~~G~~~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 247 IDTVSAEHALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred EECCCcHHHHHHHHHhhcCCCEEEEE
Confidence 87655555677788999999998864
No 344
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=89.05 E-value=5.4 Score=38.34 Aligned_cols=92 Identities=21% Similarity=0.251 Sum_probs=58.3
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc---e-EEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEcC-------CCCCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL---S-SVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILKD-------ARWGH 198 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~---~-V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~D-------~~~~~ 198 (364)
++++.+||-.|+|. |..+..+++. + |++++.+++..+.+++ +.. ..+ .....+ ....
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~-~g~--------~~vi~~~~~~~~~~~~~~~~~- 229 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKE-LGA--------THTVNVRTEDTPESAEKIAEL- 229 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-cCC--------cEEeccccccchhHHHHHHHH-
Confidence 67899999888764 5555666665 5 8899888887776644 211 111 111111 1111
Q ss_pred CCCCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 199 AEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 199 ~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
.....+|+|+-............+.|+++|+++..
T Consensus 230 ~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 230 LGGKGPDVVIECTGAESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred hCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 12345999997655555677889999999998753
No 345
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=89.04 E-value=1.7 Score=43.20 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=15.5
Q ss_pred CCEEEEECCCccHHHHHHH
Q psy7830 135 GSRVLDIGSGQGYMATAKE 153 (364)
Q Consensus 135 g~~VLDiGcGsG~~a~~la 153 (364)
..+|+|+|||+|..+..+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~v 82 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHII 82 (386)
T ss_pred ceeEEEecCCCCccHHHHH
Confidence 5689999999998876653
No 346
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=88.94 E-value=0.36 Score=39.12 Aligned_cols=34 Identities=29% Similarity=0.358 Sum_probs=24.8
Q ss_pred CeeEEEEccChHH------------HHHHHHhccCCCcEEEEEEcC
Q psy7830 203 PYDVIFFGAGTTE------------VSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 203 ~fD~Ii~~~~~~~------------l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
.||+|+|-....| ++..+.+.|+|||.+++.-.+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~ 46 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQP 46 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 4899998777644 568999999999999986644
No 347
>KOG2651|consensus
Probab=88.79 E-value=1.3 Score=43.68 Aligned_cols=40 Identities=18% Similarity=0.156 Sum_probs=33.9
Q ss_pred CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHH
Q psy7830 133 QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLK 172 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~ 172 (364)
.+-..|+|+|.|.|+++..++-. +|++||-|....+.|++
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 35578999999999999988866 99999999877777654
No 348
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=88.75 E-value=1.5 Score=41.19 Aligned_cols=70 Identities=11% Similarity=0.034 Sum_probs=54.5
Q ss_pred CCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830 132 LQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF 209 (364)
Q Consensus 132 l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~ 209 (364)
+.+|+...|+|+-+|+.|-.+.++ .|++||.-+-+ +++ .+...|+-...|.....+.....|-.+|
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~ma-----~sL-------~dtg~v~h~r~DGfk~~P~r~~idWmVC 276 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGPMA-----QSL-------MDTGQVTHLREDGFKFRPTRSNIDWMVC 276 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcceEEEEeccchhh-----hhh-------hcccceeeeeccCcccccCCCCCceEEe
Confidence 568999999999999999999888 99999986543 222 2235788888898887665567888888
Q ss_pred ccCh
Q psy7830 210 GAGT 213 (364)
Q Consensus 210 ~~~~ 213 (364)
+.+-
T Consensus 277 DmVE 280 (358)
T COG2933 277 DMVE 280 (358)
T ss_pred ehhc
Confidence 7653
No 349
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=87.99 E-value=4 Score=39.07 Aligned_cols=93 Identities=23% Similarity=0.230 Sum_probs=56.4
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEcCCCC---CCCCCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILKDARW---GHAEGG 202 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~D~~~---~~~~~~ 202 (364)
++++.+||..|+|. |..++.+++. .|++++.++...+.+++.- . .. +.....+... ......
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g-~--------~~vi~~~~~~~~~~i~~~~~~~ 235 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAG-A--------TDIINPKNGDIVEQILELTGGR 235 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhC-C--------cEEEcCCcchHHHHHHHHcCCC
Confidence 67889999977652 5555666665 5788888887776665421 1 11 1111111100 011224
Q ss_pred CeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
.+|+|+-.......+....+.|+++|+++..
T Consensus 236 ~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 236 GVDCVIEAVGFEETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred CCcEEEEccCCHHHHHHHHHHhhcCCEEEEE
Confidence 6999986554445778888999999998753
No 350
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=87.93 E-value=4.4 Score=39.08 Aligned_cols=92 Identities=22% Similarity=0.285 Sum_probs=57.7
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEcCCCC-C--CCCCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILKDARW-G--HAEGG 202 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~D~~~-~--~~~~~ 202 (364)
++++.+||-.|+|+ |..++.+++. .|+++|.+++..+.+++ ++.+.+ .....+... . .....
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~---------~g~~~~v~~~~~~~~~~i~~~~~~~ 234 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE---------YGATDIVDYKNGDVVEQILKLTGGK 234 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH---------cCCceEecCCCCCHHHHHHHHhCCC
Confidence 67899999998763 4555555655 58999999888777764 121111 111111100 0 01124
Q ss_pred CeeEEEEccChHHHHHHHHhccCCCcEEEE
Q psy7830 203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVA 232 (364)
Q Consensus 203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 232 (364)
.+|+|+-...-........+.|+++|+++.
T Consensus 235 ~~d~vld~~g~~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 235 GVDAVIIAGGGQDTFEQALKVLKPGGTISN 264 (351)
T ss_pred CCcEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 699998765555677888999999999875
No 351
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=87.87 E-value=1.2 Score=47.47 Aligned_cols=101 Identities=14% Similarity=0.046 Sum_probs=61.4
Q ss_pred CCCEEEEECCCccHHHHHHHc---------------c-eEEEEeCCHH---HHHHH-----------HHHHHhcCCCCCC
Q psy7830 134 NGSRVLDIGSGQGYMATAKEW---------------L-SSVRQLLLPE---TLNNS-----------LKNIKISRPDLLQ 183 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~---------------~-~V~~vDis~~---~l~~a-----------~~~~~~~~~~~l~ 183 (364)
..-+|+|+|-|+|+......+ . +++++|.+|- -+..+ ++-.+.......+
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 346899999999986644330 2 8999998652 22222 1111110000001
Q ss_pred C-------C--CEEEEEcCCCCCCCC-CCCeeEEEEccCh---------HHHHHHHHhccCCCcEEEEEE
Q psy7830 184 S-------K--TLEFILKDARWGHAE-GGPYDVIFFGAGT---------TEVSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 184 ~-------~--~v~~~~~D~~~~~~~-~~~fD~Ii~~~~~---------~~l~~~l~~~LkpGG~Lvi~~ 234 (364)
. . ++++..+|+.+.... ...||+++.+.-. ..++..+.++++|||+++--.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 1 1 355677887654432 2469999987543 347899999999999998544
No 352
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=87.70 E-value=1.3 Score=42.61 Aligned_cols=93 Identities=15% Similarity=0.075 Sum_probs=63.8
Q ss_pred CEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEcc
Q psy7830 136 SRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGA 211 (364)
Q Consensus 136 ~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~ 211 (364)
.+|.-+|.|. |..+..++.. .|+-+|++.+.+++...-+. .++.+...........-.++|+|+...
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~---------~rv~~~~st~~~iee~v~~aDlvIgaV 239 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG---------GRVHTLYSTPSNIEEAVKKADLVIGAV 239 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC---------ceeEEEEcCHHHHHHHhhhccEEEEEE
Confidence 3566788775 6777666655 99999999988877666542 367777766554433345789987644
Q ss_pred ChH------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830 212 GTT------EVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 212 ~~~------~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
... -+.+++.+.+|||+.++=...+.
T Consensus 240 LIpgakaPkLvt~e~vk~MkpGsVivDVAiDq 271 (371)
T COG0686 240 LIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQ 271 (371)
T ss_pred EecCCCCceehhHHHHHhcCCCcEEEEEEEcC
Confidence 332 25688999999999988544443
No 353
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=87.65 E-value=1.4 Score=42.31 Aligned_cols=93 Identities=17% Similarity=0.154 Sum_probs=59.2
Q ss_pred cCCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEcCCCC-C--CCCCC
Q psy7830 131 HLQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILKDARW-G--HAEGG 202 (364)
Q Consensus 131 ~l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~D~~~-~--~~~~~ 202 (364)
.+.++.+||..|+|. |..++.+++. +|+++..+++..+.+++.- . .. +.....+... . .....
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g-~--------~~v~~~~~~~~~~~l~~~~~~~ 226 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELG-A--------DDTINVGDEDVAARLRELTDGE 226 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhC-C--------CEEecCcccCHHHHHHHHhCCC
Confidence 367899999998764 6666666666 8888888888777764421 1 11 1111111100 0 11224
Q ss_pred CeeEEEEccChHHHHHHHHhccCCCcEEEE
Q psy7830 203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVA 232 (364)
Q Consensus 203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 232 (364)
.+|+|+....-......+.+.|+++|+++.
T Consensus 227 ~vd~vld~~g~~~~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 227 GADVVIDATGNPASMEEAVELVAHGGRVVL 256 (337)
T ss_pred CCCEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 589998765445667788899999999875
No 354
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=87.61 E-value=4.3 Score=32.41 Aligned_cols=83 Identities=22% Similarity=0.175 Sum_probs=55.5
Q ss_pred CCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC----CCCCCeeEEEEccC
Q psy7830 143 SGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH----AEGGPYDVIFFGAG 212 (364)
Q Consensus 143 cGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~----~~~~~fD~Ii~~~~ 212 (364)
||.|.++..+++. .|+.+|.+++.++.+++. .+.++.+|..+.. ..-..+|.|++...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~------------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE------------GVEVIYGDATDPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT------------TSEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc------------ccccccccchhhhHHhhcCccccCEEEEccC
Confidence 5666777777665 799999999998877652 3678999987532 11246888877654
Q ss_pred hHH---HHHHHHhccCCCcEEEEEEcCC
Q psy7830 213 TTE---VSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 213 ~~~---l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
-.. ......+.+.|...+++.+.+.
T Consensus 72 ~d~~n~~~~~~~r~~~~~~~ii~~~~~~ 99 (116)
T PF02254_consen 72 DDEENLLIALLARELNPDIRIIARVNDP 99 (116)
T ss_dssp SHHHHHHHHHHHHHHTTTSEEEEEESSH
T ss_pred CHHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 332 3345566777888888877654
No 355
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=87.61 E-value=7.1 Score=37.46 Aligned_cols=93 Identities=16% Similarity=0.135 Sum_probs=59.2
Q ss_pred CCCCCEEEEECC--CccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEc-CCCC-CC-CCCC
Q psy7830 132 LQNGSRVLDIGS--GQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILK-DARW-GH-AEGG 202 (364)
Q Consensus 132 l~~g~~VLDiGc--GsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~-D~~~-~~-~~~~ 202 (364)
+++|++||-.|+ |.|..+..+++. +|++++.+++..+.+++.+.. +.+ ..... |... .. ....
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa--------~~vi~~~~~~~~~~~i~~~~~~ 220 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGF--------DDAFNYKEEPDLDAALKRYFPN 220 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC--------ceeEEcCCcccHHHHHHHhCCC
Confidence 688999999986 345666666666 889999888888777664321 111 11111 1110 00 0124
Q ss_pred CeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
.+|+|+-...- .......+.|+++|+++..
T Consensus 221 gvd~v~d~~g~-~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 221 GIDIYFDNVGG-KMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred CcEEEEECCCH-HHHHHHHHHhccCcEEEEe
Confidence 68999865543 5667888999999998853
No 356
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=87.59 E-value=4.1 Score=38.75 Aligned_cols=86 Identities=19% Similarity=0.078 Sum_probs=53.8
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI 207 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I 207 (364)
++++.+||=.|||. |..+..+++. +|++++.+++..+.+++ + +.. .++..+ .. ....+|++
T Consensus 165 ~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~-~--------g~~--~~~~~~--~~--~~~~vD~v 229 (329)
T cd08298 165 LKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE-L--------GAD--WAGDSD--DL--PPEPLDAA 229 (329)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH-h--------CCc--EEeccC--cc--CCCcccEE
Confidence 67888998887653 2333444444 88888888876666633 2 111 111111 11 12458988
Q ss_pred EEccChHHHHHHHHhccCCCcEEEE
Q psy7830 208 FFGAGTTEVSKTILSQLKPNGRIVA 232 (364)
Q Consensus 208 i~~~~~~~l~~~l~~~LkpGG~Lvi 232 (364)
+.........+...+.|+++|+++.
T Consensus 230 i~~~~~~~~~~~~~~~l~~~G~~v~ 254 (329)
T cd08298 230 IIFAPVGALVPAALRAVKKGGRVVL 254 (329)
T ss_pred EEcCCcHHHHHHHHHHhhcCCEEEE
Confidence 8654445678889999999999885
No 357
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=87.49 E-value=3.2 Score=41.58 Aligned_cols=86 Identities=13% Similarity=0.087 Sum_probs=54.4
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI 207 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I 207 (364)
...|++|+-+|+|. |...+..++. +|+++|.++.....+.. . ...+. +..+.. ...|+|
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~---~---------G~~v~--~leeal---~~aDVV 254 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM---D---------GFRVM--TMEEAA---KIGDIF 254 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh---c---------CCEeC--CHHHHH---hcCCEE
Confidence 35799999999997 4444444444 99999999865433332 1 11221 111111 346998
Q ss_pred EEccChHHHHH-HHHhccCCCcEEEEEE
Q psy7830 208 FFGAGTTEVSK-TILSQLKPNGRIVAPV 234 (364)
Q Consensus 208 i~~~~~~~l~~-~l~~~LkpGG~Lvi~~ 234 (364)
+......+++. .....+|+|++++..-
T Consensus 255 ItaTG~~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 255 ITATGNKDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred EECCCCHHHHHHHHHhcCCCCcEEEEEC
Confidence 87666666654 5888999999887644
No 358
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=87.32 E-value=4.7 Score=39.30 Aligned_cols=93 Identities=17% Similarity=0.179 Sum_probs=55.9
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEc--CCCC-C-CCCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILK--DARW-G-HAEG 201 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~--D~~~-~-~~~~ 201 (364)
+++|++||-.|+|. |.++..+++. +|++++.+++..+.+++ + +... +..... +... . ....
T Consensus 185 ~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~-~--------Ga~~~i~~~~~~~~~~~~v~~~~~ 255 (369)
T cd08301 185 VKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK-F--------GVTEFVNPKDHDKPVQEVIAEMTG 255 (369)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-c--------CCceEEcccccchhHHHHHHHHhC
Confidence 67899999998753 3444455554 69999999988887754 2 2111 111110 0000 0 0012
Q ss_pred CCeeEEEEccChHHHHHHHHhccCCC-cEEEEE
Q psy7830 202 GPYDVIFFGAGTTEVSKTILSQLKPN-GRIVAP 233 (364)
Q Consensus 202 ~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi~ 233 (364)
+.+|+++-............+.+++| |++++.
T Consensus 256 ~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~ 288 (369)
T cd08301 256 GGVDYSFECTGNIDAMISAFECVHDGWGVTVLL 288 (369)
T ss_pred CCCCEEEECCCChHHHHHHHHHhhcCCCEEEEE
Confidence 36898886655555667778889996 887753
No 359
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=87.17 E-value=6.1 Score=36.87 Aligned_cols=102 Identities=14% Similarity=0.130 Sum_probs=66.5
Q ss_pred CCCCCEEEEECCCccHHHHHHHcc--------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC--CC
Q psy7830 132 LQNGSRVLDIGSGQGYMATAKEWL--------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA--EG 201 (364)
Q Consensus 132 l~~g~~VLDiGcGsG~~a~~la~~--------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~--~~ 201 (364)
+..+...+|+|+|+...+..+... +.+.+|+|...++...+.+.... .+. .+.-+++|...... +.
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y---~~l-~v~~l~~~~~~~La~~~~ 151 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREY---PGL-EVNALCGDYELALAELPR 151 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhC---CCC-eEeehhhhHHHHHhcccC
Confidence 345789999999999998777654 88999999999988766665522 111 35556677542211 11
Q ss_pred CCeeE-EEEccC--------hHHHHHHHHhccCCCcEEEEEEcCC
Q psy7830 202 GPYDV-IFFGAG--------TTEVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 202 ~~fD~-Ii~~~~--------~~~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
.+--+ ++.... +..++..+...++||-++++-+.-.
T Consensus 152 ~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~ 196 (321)
T COG4301 152 GGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLR 196 (321)
T ss_pred CCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecccc
Confidence 22122 222222 2347789999999999999877543
No 360
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=87.15 E-value=5.8 Score=37.59 Aligned_cols=92 Identities=16% Similarity=0.143 Sum_probs=57.8
Q ss_pred CCCCCEEEEECC--CccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEcCCCC-C-CCCCCC
Q psy7830 132 LQNGSRVLDIGS--GQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILKDARW-G-HAEGGP 203 (364)
Q Consensus 132 l~~g~~VLDiGc--GsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~D~~~-~-~~~~~~ 203 (364)
+++|++||-.|+ |.|..+..+++. +|++++.+++..+.+++ + +...+ .....|... . ......
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~-~--------Ga~~vi~~~~~~~~~~v~~~~~~g 211 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE-L--------GFDAVFNYKTVSLEEALKEAAPDG 211 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-c--------CCCEEEeCCCccHHHHHHHHCCCC
Confidence 678999998884 345566666666 89999999888777765 2 11111 111111110 0 001246
Q ss_pred eeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 204 YDVIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 204 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
+|+|+-...- .......+.|+++|+++..
T Consensus 212 vd~vld~~g~-~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 212 IDCYFDNVGG-EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred cEEEEECCCH-HHHHHHHHhhccCCEEEEE
Confidence 9999865443 5667889999999998753
No 361
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=87.14 E-value=7.2 Score=37.73 Aligned_cols=93 Identities=20% Similarity=0.171 Sum_probs=54.3
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEcCCC----CC--CC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILKDAR----WG--HA 199 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~D~~----~~--~~ 199 (364)
..++.+||-.|+|. |..+..+++. +|++++.+++..+.+++ + +.+.+ .....+.. .. ..
T Consensus 175 ~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~-~--------g~~~vi~~~~~~~~~~~~~i~~~~ 245 (361)
T cd08231 175 VGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE-F--------GADATIDIDELPDPQRRAIVRDIT 245 (361)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-c--------CCCeEEcCcccccHHHHHHHHHHh
Confidence 34888999888642 3334444444 68889988887766643 2 11111 11110100 00 01
Q ss_pred CCCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 200 EGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 200 ~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
....+|+|+-............+.|+++|+++..
T Consensus 246 ~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 246 GGRGADVVIEASGHPAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred CCCCCcEEEECCCChHHHHHHHHHhccCCEEEEE
Confidence 1246999987654455667788999999999853
No 362
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=86.96 E-value=2.8 Score=40.27 Aligned_cols=92 Identities=18% Similarity=0.155 Sum_probs=56.9
Q ss_pred CCCC--CEEEEECC--CccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEcCCCCCC--CC
Q psy7830 132 LQNG--SRVLDIGS--GQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILKDARWGH--AE 200 (364)
Q Consensus 132 l~~g--~~VLDiGc--GsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~D~~~~~--~~ 200 (364)
+++| ++||-.|+ |.|..+..+++. +|++++.+++..+.+++.+.. +.+ .....+..... ..
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa--------~~vi~~~~~~~~~~i~~~~ 221 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF--------DAAINYKTDNVAERLRELC 221 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC--------cEEEECCCCCHHHHHHHHC
Confidence 5555 89999986 346666667665 599999998887777654321 111 11111111000 01
Q ss_pred CCCeeEEEEccChHHHHHHHHhccCCCcEEEE
Q psy7830 201 GGPYDVIFFGAGTTEVSKTILSQLKPNGRIVA 232 (364)
Q Consensus 201 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 232 (364)
...+|+|+-...-.. .....+.|+++|+++.
T Consensus 222 ~~gvd~vid~~g~~~-~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 222 PEGVDVYFDNVGGEI-SDTVISQMNENSHIIL 252 (345)
T ss_pred CCCceEEEECCCcHH-HHHHHHHhccCCEEEE
Confidence 246999986544443 5778899999999885
No 363
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=86.52 E-value=2.4 Score=40.61 Aligned_cols=93 Identities=17% Similarity=0.174 Sum_probs=55.7
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEcCCCCCCCCCCCeeE
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILKDARWGHAEGGPYDV 206 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~D~~~~~~~~~~fD~ 206 (364)
+.++.+||-.|||. |..+..+++. +|+.++.+++..+.+++ + +.+. +.....+..........+|+
T Consensus 161 ~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~-~--------g~~~~i~~~~~~~~~~~~~~~~~d~ 231 (333)
T cd08296 161 AKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARK-L--------GAHHYIDTSKEDVAEALQELGGAKL 231 (333)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH-c--------CCcEEecCCCccHHHHHHhcCCCCE
Confidence 67889999999643 3444444544 89999999887777744 2 1111 11111111000001135899
Q ss_pred EEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 207 IFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 207 Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
++.............+.|+++|+++..
T Consensus 232 vi~~~g~~~~~~~~~~~l~~~G~~v~~ 258 (333)
T cd08296 232 ILATAPNAKAISALVGGLAPRGKLLIL 258 (333)
T ss_pred EEECCCchHHHHHHHHHcccCCEEEEE
Confidence 986543455677788999999998854
No 364
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=86.33 E-value=0.51 Score=40.97 Aligned_cols=37 Identities=22% Similarity=0.168 Sum_probs=27.9
Q ss_pred CCeeEEEEccChHH-----------------HHHHHHhccCCCcEEEEEEcCCC
Q psy7830 202 GPYDVIFFGAGTTE-----------------VSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 202 ~~fD~Ii~~~~~~~-----------------l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
++||.+.+...++| ...++.++||+||.|++.++-..
T Consensus 62 ~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 62 GSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred ccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 56777766655544 35678899999999999887754
No 365
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.90 E-value=0.22 Score=42.95 Aligned_cols=42 Identities=19% Similarity=0.223 Sum_probs=34.4
Q ss_pred CCCCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEcCCC
Q psy7830 197 GHAEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 197 ~~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
..+.+++.|+|++.-.++| .++++++.|||||.|-+.+++..
T Consensus 41 ~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~ 90 (185)
T COG4627 41 SMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLK 90 (185)
T ss_pred ccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcc
Confidence 3456788999988777766 35799999999999999998864
No 366
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=85.86 E-value=3.4 Score=39.61 Aligned_cols=92 Identities=22% Similarity=0.289 Sum_probs=57.0
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc---e-EEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEcC---CCCCCCCCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL---S-SVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILKD---ARWGHAEGG 202 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~---~-V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~D---~~~~~~~~~ 202 (364)
+.++.+||-.|+|. |..+..+++. + |++++.++...+.+++ . +... +...... +... ....
T Consensus 157 ~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~-~--------g~~~~~~~~~~~~~~~~~~-~~~~ 226 (343)
T cd08236 157 ITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE-L--------GADDTINPKEEDVEKVREL-TEGR 226 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH-c--------CCCEEecCccccHHHHHHH-hCCC
Confidence 67889999998755 5566666655 5 9999888877766643 1 1111 1110000 0111 1123
Q ss_pred CeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
.+|+|+....-......+.+.|+++|+++..
T Consensus 227 ~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 227 GADLVIEAAGSPATIEQALALARPGGKVVLV 257 (343)
T ss_pred CCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 5999997654456677889999999997753
No 367
>KOG2920|consensus
Probab=85.83 E-value=0.78 Score=43.34 Aligned_cols=61 Identities=20% Similarity=0.112 Sum_probs=40.4
Q ss_pred CCCceecCCCccChHHHHHHHHHHH-hccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHH
Q psy7830 104 DIPYAFANQVVMEPPSYIARCLEQL-VDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLN 168 (364)
Q Consensus 104 d~~l~ig~g~~~s~P~~~a~~l~~L-~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~ 168 (364)
++++.+..++.- .+..+.+.+ .+..-.|++|||+|||+|...+.+... .+...|.+...++
T Consensus 89 EGg~k~wecS~d----l~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 89 EGGLKLWECSVD----LLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred ecceEEeecHHH----HHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 455556555433 333334333 222357899999999999888777665 8888888877763
No 368
>PRK11524 putative methyltransferase; Provisional
Probab=85.67 E-value=1.1 Score=42.66 Aligned_cols=52 Identities=19% Similarity=0.105 Sum_probs=38.7
Q ss_pred CCEEEEEcCCCCCC--CCCCCeeEEEEccChH----------------------HHHHHHHhccCCCcEEEEEEcC
Q psy7830 185 KTLEFILKDARWGH--AEGGPYDVIFFGAGTT----------------------EVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 185 ~~v~~~~~D~~~~~--~~~~~fD~Ii~~~~~~----------------------~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
.+.+++++|+.+.. .++++||+|+++.++. ..+.++.++|||||.+++....
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~ 82 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNST 82 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 45678889987642 2357899999987641 2567899999999999986544
No 369
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=84.58 E-value=3.6 Score=38.82 Aligned_cols=55 Identities=25% Similarity=0.193 Sum_probs=45.6
Q ss_pred HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHh
Q psy7830 122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKI 176 (364)
Q Consensus 122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~ 176 (364)
+.+...+.....+++.|||.-+|+|....+.... ..+++|+++..++.+.+++..
T Consensus 210 ~l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 210 ALIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred HHHHHHHHhcCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHh
Confidence 3333333334679999999999999999888777 999999999999999999876
No 370
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=84.06 E-value=4.7 Score=39.30 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=57.9
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC----CC-CCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW----GH-AEG 201 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~----~~-~~~ 201 (364)
+.++.+||-.|+|. |..+..+++. .++++|.++...+.+++. +.. .++..+... .. ...
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~---------g~~--~~i~~~~~~~~~~v~~~~~ 252 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL---------GAT--HVINPKEEDLVAAIREITG 252 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc---------CCc--EEecCCCcCHHHHHHHHhC
Confidence 57889999988754 5555566655 599999998887766541 111 111111100 00 012
Q ss_pred CCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 202 GPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 202 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
..+|+|+-..........+.+.|+++|+++..
T Consensus 253 ~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 253 GGVDYALDTTGVPAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred CCCcEEEECCCCcHHHHHHHHHhccCCEEEEe
Confidence 46899987655456678889999999998863
No 371
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=83.99 E-value=4 Score=36.61 Aligned_cols=109 Identities=19% Similarity=0.152 Sum_probs=68.3
Q ss_pred ChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE
Q psy7830 116 EPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL 187 (364)
Q Consensus 116 s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v 187 (364)
..|.-...+-+.|-+ .....|+|+|.-.|..++..|.. +|.++|+|-..++-+... .++|
T Consensus 53 k~p~D~~~yQellw~--~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e----------~p~i 120 (237)
T COG3510 53 KSPSDMWNYQELLWE--LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE----------VPDI 120 (237)
T ss_pred CCHHHHHHHHHHHHh--cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc----------CCCe
Confidence 445454555555542 34568999999999988887765 899999986554433222 2689
Q ss_pred EEEEcCCCCCCC------CCCCeeEEEE----ccChHHHH---HHHHhccCCCcEEEEEEcC
Q psy7830 188 EFILKDARWGHA------EGGPYDVIFF----GAGTTEVS---KTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 188 ~~~~~D~~~~~~------~~~~fD~Ii~----~~~~~~l~---~~l~~~LkpGG~Lvi~~~~ 236 (364)
.++.++..+... ..+.|-.|++ +..+.+++ +.+..+|..|-++|+-...
T Consensus 121 ~f~egss~dpai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~ 182 (237)
T COG3510 121 LFIEGSSTDPAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSN 182 (237)
T ss_pred EEEeCCCCCHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEeccc
Confidence 999998765321 0123334443 23334444 4566788889888875543
No 372
>PLN02494 adenosylhomocysteinase
Probab=83.94 E-value=3.3 Score=42.22 Aligned_cols=87 Identities=13% Similarity=0.088 Sum_probs=54.8
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI 207 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I 207 (364)
...|++|+-+|+|. |......++. +|+.+|.++.....+... ...+. +..+. -...|+|
T Consensus 251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~------------G~~vv--~leEa---l~~ADVV 313 (477)
T PLN02494 251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALME------------GYQVL--TLEDV---VSEADIF 313 (477)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhc------------CCeec--cHHHH---HhhCCEE
Confidence 35799999999986 3333333333 999999998654443221 11111 21111 1357999
Q ss_pred EEccChHHH-HHHHHhccCCCcEEEEEEc
Q psy7830 208 FFGAGTTEV-SKTILSQLKPNGRIVAPVG 235 (364)
Q Consensus 208 i~~~~~~~l-~~~l~~~LkpGG~Lvi~~~ 235 (364)
+......++ .....+.+|+||+|+..-.
T Consensus 314 I~tTGt~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 314 VTTTGNKDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred EECCCCccchHHHHHhcCCCCCEEEEcCC
Confidence 887666665 4788899999999887543
No 373
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=83.46 E-value=4.4 Score=39.30 Aligned_cols=105 Identities=21% Similarity=0.150 Sum_probs=63.2
Q ss_pred HHHHHHHhccCCCCCEEEEECCCc--cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCC-CEEEEEcCCC
Q psy7830 122 ARCLEQLVDHLQNGSRVLDIGSGQ--GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSK-TLEFILKDAR 195 (364)
Q Consensus 122 a~~l~~L~~~l~~g~~VLDiGcGs--G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~-~v~~~~~D~~ 195 (364)
..++.... .+++|++||-.|+.. |.+++.+++. .++++--+++..+.+++. +.+ -+.+...|..
T Consensus 131 ~~~l~~~~-~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~l---------GAd~vi~y~~~~~~ 200 (326)
T COG0604 131 WLALFDRA-GLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKEL---------GADHVINYREEDFV 200 (326)
T ss_pred HHHHHHhc-CCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhc---------CCCEEEcCCcccHH
Confidence 33444422 378899999999554 4666777776 677777777666654442 211 2233333322
Q ss_pred CC---CCCCCCeeEEEEccChHHHHHHHHhccCCCcEEEEEEcCC
Q psy7830 196 WG---HAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 196 ~~---~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
+. ......+|+|+-...-+. +....+.|+++|+++..-...
T Consensus 201 ~~v~~~t~g~gvDvv~D~vG~~~-~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 201 EQVRELTGGKGVDVVLDTVGGDT-FAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred HHHHHHcCCCCceEEEECCCHHH-HHHHHHHhccCCEEEEEecCC
Confidence 11 111236999986655444 455888999999999866554
No 374
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=83.31 E-value=11 Score=37.65 Aligned_cols=102 Identities=19% Similarity=0.176 Sum_probs=60.8
Q ss_pred CCCCCEEEEEC-CC-ccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc----CCCCC--
Q psy7830 132 LQNGSRVLDIG-SG-QGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK----DARWG-- 197 (364)
Q Consensus 132 l~~g~~VLDiG-cG-sG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~----D~~~~-- 197 (364)
+++|++||-+| +| -|.++..+++. +|+++|.+++.++.+++...... ...+. ...++.. +....
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~-~~~Ga-~~~~i~~~~~~~~~~~v~ 250 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEA-ASRGI-ELLYVNPATIDDLHATLM 250 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccc-cccCc-eEEEECCCccccHHHHHH
Confidence 57889999997 34 46666666654 59999999999998887521100 00000 1111211 11000
Q ss_pred -CCCCCCeeEEEEccChHHHHHHHHhccCCCcEEEEEEc
Q psy7830 198 -HAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVG 235 (364)
Q Consensus 198 -~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~~ 235 (364)
......+|+|+.............+.++++|.+++..+
T Consensus 251 ~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g 289 (410)
T cd08238 251 ELTGGQGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAG 289 (410)
T ss_pred HHhCCCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEc
Confidence 01123699988765555677778899999887766443
No 375
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=83.24 E-value=1.8 Score=42.81 Aligned_cols=92 Identities=17% Similarity=0.067 Sum_probs=52.7
Q ss_pred CCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830 134 NGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF 209 (364)
Q Consensus 134 ~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~ 209 (364)
++.+|+-+|+|. |..++..+.. +|+.+|.++..++.+...... .+.....+...+...-..+|+|+.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~---------~v~~~~~~~~~l~~~l~~aDvVI~ 236 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG---------RIHTRYSNAYEIEDAVKRADLLIG 236 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc---------eeEeccCCHHHHHHHHccCCEEEE
Confidence 346799999873 4555544444 899999998876655443311 222111111111111146899987
Q ss_pred ccCh-----HH-HHHHHHhccCCCcEEEEEE
Q psy7830 210 GAGT-----TE-VSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 210 ~~~~-----~~-l~~~l~~~LkpGG~Lvi~~ 234 (364)
.... .. +.+++.+.+++|++++-..
T Consensus 237 a~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 237 AVLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred ccccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 6422 22 3467778899998877433
No 376
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=83.10 E-value=18 Score=34.65 Aligned_cols=92 Identities=24% Similarity=0.233 Sum_probs=55.4
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEcCC---CCCCCCCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILKDA---RWGHAEGG 202 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~D~---~~~~~~~~ 202 (364)
..+|.+||-.|+|. |..+..+++. +|++++-+++..+.+++. +.+. +.....+. ... ...+
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~---------g~~~~~~~~~~~~~~~~~~-~~~~ 230 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM---------GADVVINPREEDVVEVKSV-TDGT 230 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh---------CcceeeCcccccHHHHHHH-cCCC
Confidence 46888998877653 4555555655 477887777766665542 1111 11111111 111 1234
Q ss_pred CeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
.+|+|+.+.........+.+.|+++|+++..
T Consensus 231 ~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 231 GVDVVLEMSGNPKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred CCCEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 6999997665556677788999999998754
No 377
>KOG0023|consensus
Probab=82.72 E-value=2 Score=41.41 Aligned_cols=98 Identities=18% Similarity=0.047 Sum_probs=59.6
Q ss_pred CCCCCEEEEECCC-ccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830 132 LQNGSRVLDIGSG-QGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI 207 (364)
Q Consensus 132 l~~g~~VLDiGcG-sG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I 207 (364)
+.||++|--+|.| -|.++..+|+. +|+++|-+...-+.+-+++.. +..-....|-.....-.+..|.+
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGA--------d~fv~~~~d~d~~~~~~~~~dg~ 250 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGA--------DVFVDSTEDPDIMKAIMKTTDGG 250 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCc--------ceeEEecCCHHHHHHHHHhhcCc
Confidence 5689988777755 58888888887 999999997665555554432 22211111211000001234443
Q ss_pred EEccC--hHHHHHHHHhccCCCcEEEEEEcCC
Q psy7830 208 FFGAG--TTEVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 208 i~~~~--~~~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
+-... ..+.++.+.++||++|.+|+.-.+.
T Consensus 251 ~~~v~~~a~~~~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 251 IDTVSNLAEHALEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred ceeeeeccccchHHHHHHhhcCCEEEEEeCcC
Confidence 32221 5667778889999999999865554
No 378
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=82.29 E-value=8.6 Score=36.79 Aligned_cols=87 Identities=21% Similarity=0.189 Sum_probs=52.5
Q ss_pred CCCEEEEECCCcc-HHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830 134 NGSRVLDIGSGQG-YMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF 209 (364)
Q Consensus 134 ~g~~VLDiGcGsG-~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~ 209 (364)
.+.+|+=+|+|.= ...+..++. +|+.+|.++...+.++. ++ .++...+ .....-..+|+|+.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~---------~G---~~~~~~~--~l~~~l~~aDiVI~ 216 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE---------MG---LSPFHLS--ELAEEVGKIDIIFN 216 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---------cC---CeeecHH--HHHHHhCCCCEEEE
Confidence 5889999998752 222222222 89999999876554432 11 1222111 11111246899998
Q ss_pred ccChHHHHHHHHhccCCCcEEEEEE
Q psy7830 210 GAGTTEVSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 210 ~~~~~~l~~~l~~~LkpGG~Lvi~~ 234 (364)
..+..-+.+.+.+.+++|+.++-..
T Consensus 217 t~p~~~i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 217 TIPALVLTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred CCChhhhhHHHHHcCCCCcEEEEEc
Confidence 7766556678888999988776433
No 379
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=82.19 E-value=15 Score=35.25 Aligned_cols=90 Identities=19% Similarity=0.142 Sum_probs=55.0
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC----CC-CCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW----GH-AEG 201 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~----~~-~~~ 201 (364)
+.++.+||-.|+|. |..+..+++. .|++++.++...+.+++ + +.. .++...... .. ...
T Consensus 173 ~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~--------g~~--~~~~~~~~~~~~~~~~~~~ 241 (350)
T cd08240 173 LVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA-A--------GAD--VVVNGSDPDAAKRIIKAAG 241 (350)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-h--------CCc--EEecCCCccHHHHHHHHhC
Confidence 34788999887653 4444555554 68889988887777643 2 111 111111000 00 011
Q ss_pred CCeeEEEEccChHHHHHHHHhccCCCcEEEE
Q psy7830 202 GPYDVIFFGAGTTEVSKTILSQLKPNGRIVA 232 (364)
Q Consensus 202 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 232 (364)
+.+|+|+.............+.|+++|+++.
T Consensus 242 ~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~ 272 (350)
T cd08240 242 GGVDAVIDFVNNSATASLAFDILAKGGKLVL 272 (350)
T ss_pred CCCcEEEECCCCHHHHHHHHHHhhcCCeEEE
Confidence 2689999765555678888999999999885
No 380
>PLN02702 L-idonate 5-dehydrogenase
Probab=81.99 E-value=7.2 Score=37.88 Aligned_cols=92 Identities=21% Similarity=0.266 Sum_probs=55.6
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE---cCCCC----CC-
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL---KDARW----GH- 198 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~---~D~~~----~~- 198 (364)
+.++.+||-+|+|. |..+..+++. .|+++|.++...+.+++ + +.+.+.... .+... ..
T Consensus 179 ~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~--------g~~~~~~~~~~~~~~~~~~~~~~~ 249 (364)
T PLN02702 179 IGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQ-L--------GADEIVLVSTNIEDVESEVEEIQK 249 (364)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-h--------CCCEEEecCcccccHHHHHHHHhh
Confidence 57888999997642 4445555554 57889998887776654 2 111111110 11100 00
Q ss_pred CCCCCeeEEEEccChHHHHHHHHhccCCCcEEEE
Q psy7830 199 AEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVA 232 (364)
Q Consensus 199 ~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 232 (364)
...+.+|+|+-...-........+.|+++|+++.
T Consensus 250 ~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~ 283 (364)
T PLN02702 250 AMGGGIDVSFDCVGFNKTMSTALEATRAGGKVCL 283 (364)
T ss_pred hcCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 1124689998765545567888899999999764
No 381
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=81.95 E-value=3.3 Score=41.18 Aligned_cols=71 Identities=20% Similarity=0.085 Sum_probs=46.4
Q ss_pred CEEEEECCCc-cHHHHHH-Hcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC---CCCeeEE
Q psy7830 136 SRVLDIGSGQ-GYMATAK-EWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE---GGPYDVI 207 (364)
Q Consensus 136 ~~VLDiGcGs-G~~a~~l-a~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~---~~~fD~I 207 (364)
++||-||||. |...+.. ++. +|+..|.+++..+.+..... .++++...|+.+...- -..+|+|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~---------~~v~~~~vD~~d~~al~~li~~~d~V 72 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG---------GKVEALQVDAADVDALVALIKDFDLV 72 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc---------ccceeEEecccChHHHHHHHhcCCEE
Confidence 5799999963 2222222 333 89999999988887766532 3788888888654211 1357999
Q ss_pred EEccChHH
Q psy7830 208 FFGAGTTE 215 (364)
Q Consensus 208 i~~~~~~~ 215 (364)
+...+...
T Consensus 73 In~~p~~~ 80 (389)
T COG1748 73 INAAPPFV 80 (389)
T ss_pred EEeCCchh
Confidence 87666543
No 382
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=81.85 E-value=2 Score=36.78 Aligned_cols=99 Identities=21% Similarity=0.187 Sum_probs=51.3
Q ss_pred HHHHHHhccCC-CCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830 123 RCLEQLVDHLQ-NGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG 197 (364)
Q Consensus 123 ~~l~~L~~~l~-~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~ 197 (364)
.++++....+. ...-|||+|-|+|..=-++... +|+.+|..-..-..+. .+.-.++.+|+.+.
T Consensus 16 ~~L~~a~~~v~~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~------------P~~~~~ilGdi~~t 83 (160)
T PF12692_consen 16 DCLNWAAAQVAGLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSST------------PPEEDLILGDIRET 83 (160)
T ss_dssp HHHHHHHHHTTT--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---------------GGGEEES-HHHH
T ss_pred HHHHHHHHHhcCCCCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCC------------CchHheeeccHHHH
Confidence 45666543332 3357999999999887777665 8999997422211110 12234566776543
Q ss_pred CCC----CCCeeEEEEccCh----------HHHHHHHHhccCCCcEEEEE
Q psy7830 198 HAE----GGPYDVIFFGAGT----------TEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 198 ~~~----~~~fD~Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~ 233 (364)
.+. ..+.-+++++... .++.+.+..+|.|||++|-.
T Consensus 84 l~~~~~~g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~ 133 (160)
T PF12692_consen 84 LPALARFGAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSG 133 (160)
T ss_dssp HHHHHHH-S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred hHHHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeC
Confidence 221 2234455554333 34778899999999998843
No 383
>PRK10083 putative oxidoreductase; Provisional
Probab=81.84 E-value=9.5 Score=36.40 Aligned_cols=93 Identities=14% Similarity=0.063 Sum_probs=54.5
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHc--c---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEcCCCCCCC-CCCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEW--L---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILKDARWGHA-EGGP 203 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~--~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~D~~~~~~-~~~~ 203 (364)
+++|++||=.|+|. |..+..+++ . .++++|.+++..+.+++. +.+.+ .....+...... ....
T Consensus 158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~---------Ga~~~i~~~~~~~~~~~~~~g~~ 228 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKES---------GADWVINNAQEPLGEALEEKGIK 228 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHh---------CCcEEecCccccHHHHHhcCCCC
Confidence 67899999999653 334444444 2 588899998888777652 11111 111111111011 1123
Q ss_pred eeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 204 YDVIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 204 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
+|+|+-............+.|+++|+++..
T Consensus 229 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 229 PTLIIDAACHPSILEEAVTLASPAARIVLM 258 (339)
T ss_pred CCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 567776544455677788999999998863
No 384
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=81.69 E-value=4.9 Score=40.54 Aligned_cols=85 Identities=12% Similarity=0.066 Sum_probs=53.1
Q ss_pred CCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830 133 QNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF 208 (364)
Q Consensus 133 ~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii 208 (364)
..|.+|+-+|+|. |......++. +|+.+|+++.....+.. . ..++. +..+. ...+|+|+
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~---~---------G~~v~--~l~ea---l~~aDVVI 272 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM---D---------GFRVM--TMEEA---AELGDIFV 272 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh---c---------CCEec--CHHHH---HhCCCEEE
Confidence 4799999999986 3333333333 99999999876543322 1 11111 22111 13589998
Q ss_pred EccChHHHHH-HHHhccCCCcEEEEEE
Q psy7830 209 FGAGTTEVSK-TILSQLKPNGRIVAPV 234 (364)
Q Consensus 209 ~~~~~~~l~~-~l~~~LkpGG~Lvi~~ 234 (364)
......+++. .....+|+|++++..-
T Consensus 273 ~aTG~~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 273 TATGNKDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred ECCCCHHHHHHHHHhcCCCCCEEEEcC
Confidence 8766566554 7889999999877643
No 385
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=81.02 E-value=16 Score=36.39 Aligned_cols=107 Identities=13% Similarity=0.081 Sum_probs=65.5
Q ss_pred HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcceEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCC
Q psy7830 122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEG 201 (364)
Q Consensus 122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~ 201 (364)
..+++.+.+.... .+||-++=.-|.++..++...++.+--|--.-...++|++.|. +..+.+++... .... .
T Consensus 33 e~ll~~~~~~~~~-~~~~i~nd~fGal~~~l~~~~~~~~~ds~~~~~~~~~n~~~n~---~~~~~~~~~~~--~~~~--~ 104 (378)
T PRK15001 33 EYLLQQLDDTEIR-GPVLILNDAFGALSCALAEHKPYSIGDSYISELATRENLRLNG---IDESSVKFLDS--TADY--P 104 (378)
T ss_pred HHHHHHHhhcccC-CCEEEEcCchhHHHHHHHhCCCCeeehHHHHHHHHHHHHHHcC---CCcccceeecc--cccc--c
Confidence 4455555532222 3799999999999999996533333112223334566777754 33334555432 2222 2
Q ss_pred CCeeEEEEccC-----hHHHHHHHHhccCCCcEEEEEEcC
Q psy7830 202 GPYDVIFFGAG-----TTEVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 202 ~~fD~Ii~~~~-----~~~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
+.+|+|+.-.+ +++.+..+...|.||+.+++....
T Consensus 105 ~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g~~~ 144 (378)
T PRK15001 105 QQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGAKA 144 (378)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEEEEec
Confidence 45899987544 356788999999999998754443
No 386
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=81.01 E-value=22 Score=34.01 Aligned_cols=93 Identities=22% Similarity=0.177 Sum_probs=55.1
Q ss_pred CCCCCEEEEECCC-ccHHHHHHHcc---e-EEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEcCCCC---CCCCCC
Q psy7830 132 LQNGSRVLDIGSG-QGYMATAKEWL---S-SVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILKDARW---GHAEGG 202 (364)
Q Consensus 132 l~~g~~VLDiGcG-sG~~a~~la~~---~-V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~D~~~---~~~~~~ 202 (364)
..+|.+||-.|+| .|..++.+++. + |++++.++...+.+++. +... +.....+... ......
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~---------g~~~~v~~~~~~~~~~l~~~~~~~ 229 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKM---------GATYVVNPFKEDVVKEVADLTDGE 229 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh---------CCcEEEcccccCHHHHHHHhcCCC
Confidence 5678888887764 24444555554 5 88888888777666542 1111 1111111100 011234
Q ss_pred CeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
.+|+|+-..........+.+.|+++|+++..
T Consensus 230 ~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 230 GVDVFLEMSGAPKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred CCCEEEECCCCHHHHHHHHHhhcCCCEEEEE
Confidence 6999987655456678889999999998653
No 387
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=80.78 E-value=3.8 Score=34.13 Aligned_cols=87 Identities=15% Similarity=0.153 Sum_probs=45.5
Q ss_pred CCCEEEEECCCccHHH-HHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC-CCCeeEEEE
Q psy7830 134 NGSRVLDIGSGQGYMA-TAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE-GGPYDVIFF 209 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a-~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~-~~~fD~Ii~ 209 (364)
...+|.|+|-|.=.-. ..|.+. .|+++|+.+. ++. ..+.++..|+.+...+ ....|+|++
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~-------~a~---------~g~~~v~DDif~P~l~iY~~a~lIYS 76 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR-------KAP---------EGVNFVVDDIFNPNLEIYEGADLIYS 76 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S--------------------STTEE---SSS--HHHHTTEEEEEE
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc-------ccc---------cCcceeeecccCCCHHHhcCCcEEEE
Confidence 3449999998875443 344444 9999999987 111 2567888898764322 257899999
Q ss_pred ccChHHHHHHHHhccCC-CcEEEEEEcC
Q psy7830 210 GAGTTEVSKTILSQLKP-NGRIVAPVGN 236 (364)
Q Consensus 210 ~~~~~~l~~~l~~~Lkp-GG~Lvi~~~~ 236 (364)
--+-.++.+.+.++-+. |.-+++.-..
T Consensus 77 iRPP~El~~~il~lA~~v~adlii~pL~ 104 (127)
T PF03686_consen 77 IRPPPELQPPILELAKKVGADLIIRPLG 104 (127)
T ss_dssp ES--TTSHHHHHHHHHHHT-EEEEE-BT
T ss_pred eCCChHHhHHHHHHHHHhCCCEEEECCC
Confidence 88776665555554433 5555554433
No 388
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=80.39 E-value=4.5 Score=39.01 Aligned_cols=93 Identities=20% Similarity=0.209 Sum_probs=56.2
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEcCCCC-C--CCCCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILKDARW-G--HAEGG 202 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~D~~~-~--~~~~~ 202 (364)
+++|.+||-.|+|. |..+..+++. +|++++.+++..+.+++ +.. +. +.....+... . .....
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~-~ga--------~~~i~~~~~~~~~~l~~~~~~~ 240 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE-LGA--------TIVLDPTEVDVVAEVRKLTGGG 240 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-hCC--------CEEECCCccCHHHHHHHHhCCC
Confidence 67889999988642 3344444444 68889999888877754 211 11 1111111100 0 01123
Q ss_pred CeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
.+|+|+-............+.|+++|+++..
T Consensus 241 ~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 241 GVDVSFDCAGVQATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred CCCEEEECCCCHHHHHHHHHhccCCCEEEEE
Confidence 5999997765555677888999999997753
No 389
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=80.36 E-value=18 Score=29.76 Aligned_cols=87 Identities=16% Similarity=0.141 Sum_probs=58.2
Q ss_pred CCCCEEEEECCCcc-HHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC-CCCeeEEE
Q psy7830 133 QNGSRVLDIGSGQG-YMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE-GGPYDVIF 208 (364)
Q Consensus 133 ~~g~~VLDiGcGsG-~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~-~~~fD~Ii 208 (364)
..| +|.|+|-|-= ..+..++++ .|+++|+.+. +.. ..++++..|+++.... ....|+|+
T Consensus 13 ~~g-kVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~-------~a~---------~g~~~v~DDitnP~~~iY~~A~lIY 75 (129)
T COG1255 13 ARG-KVVEVGIGFFLDVAKRLAERGFDVLATDINEK-------TAP---------EGLRFVVDDITNPNISIYEGADLIY 75 (129)
T ss_pred cCC-cEEEEccchHHHHHHHHHHcCCcEEEEecccc-------cCc---------ccceEEEccCCCccHHHhhCcccee
Confidence 344 9999997753 234555555 8999999876 111 3688899998764332 25689999
Q ss_pred EccChHHHHHHHHhccCC-CcEEEEEEcC
Q psy7830 209 FGAGTTEVSKTILSQLKP-NGRIVAPVGN 236 (364)
Q Consensus 209 ~~~~~~~l~~~l~~~Lkp-GG~Lvi~~~~ 236 (364)
+--+..++...+.++-+. |..+++.-..
T Consensus 76 SiRpppEl~~~ildva~aVga~l~I~pL~ 104 (129)
T COG1255 76 SIRPPPELQSAILDVAKAVGAPLYIKPLT 104 (129)
T ss_pred ecCCCHHHHHHHHHHHHhhCCCEEEEecC
Confidence 998888887766666544 5455554433
No 390
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=79.94 E-value=16 Score=35.45 Aligned_cols=92 Identities=22% Similarity=0.196 Sum_probs=54.9
Q ss_pred CCCCCEEEEECCC-ccHHHHHHHcc---e-EEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC------CCC
Q psy7830 132 LQNGSRVLDIGSG-QGYMATAKEWL---S-SVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG------HAE 200 (364)
Q Consensus 132 l~~g~~VLDiGcG-sG~~a~~la~~---~-V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~------~~~ 200 (364)
+.++.+||-.|+| .|..+..+++. . |++++.+++..+.+++ +. .. .++..+.... ...
T Consensus 185 ~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~-~g--------~~--~v~~~~~~~~~~~l~~~~~ 253 (367)
T cd08263 185 VRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE-LG--------AT--HTVNAAKEDAVAAIREITG 253 (367)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-hC--------Cc--eEecCCcccHHHHHHHHhC
Confidence 4678899877654 24444555554 5 8999998887776643 21 11 1111111100 112
Q ss_pred CCCeeEEEEccChHHHHHHHHhccCCCcEEEEEE
Q psy7830 201 GGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 201 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~ 234 (364)
...+|+|+....-........+.|+++|+++...
T Consensus 254 ~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 254 GRGVDVVVEALGKPETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred CCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEc
Confidence 3469999865443336777889999999988653
No 391
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=79.92 E-value=12 Score=36.35 Aligned_cols=92 Identities=14% Similarity=0.109 Sum_probs=55.0
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc--CC----CCCCCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK--DA----RWGHAE 200 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~--D~----~~~~~~ 200 (364)
+.+|.+||-.|+|. |..+..+++. .|++++.+++..+.+++ +... .-+..... +. ....
T Consensus 181 ~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~-~g~~-------~~v~~~~~~~~~~~~l~~~~-- 250 (365)
T cd05279 181 VTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ-LGAT-------ECINPRDQDKPIVEVLTEMT-- 250 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-hCCC-------eecccccccchHHHHHHHHh--
Confidence 67899999887653 3344444554 48889988888777744 2110 01111111 10 0111
Q ss_pred CCCeeEEEEccChHHHHHHHHhccC-CCcEEEEE
Q psy7830 201 GGPYDVIFFGAGTTEVSKTILSQLK-PNGRIVAP 233 (364)
Q Consensus 201 ~~~fD~Ii~~~~~~~l~~~l~~~Lk-pGG~Lvi~ 233 (364)
.+.+|+|+-............+.|+ ++|+++..
T Consensus 251 ~~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 251 DGGVDYAFEVIGSADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred CCCCcEEEECCCCHHHHHHHHHHhccCCCEEEEE
Confidence 2468999865444456677788899 99998854
No 392
>KOG2539|consensus
Probab=79.46 E-value=2.4 Score=42.77 Aligned_cols=101 Identities=17% Similarity=0.036 Sum_probs=59.3
Q ss_pred CCEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCC-CCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830 135 GSRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRP-DLLQSKTLEFILKDARWGHAEGGPYDVI 207 (364)
Q Consensus 135 g~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~-~~l~~~~v~~~~~D~~~~~~~~~~fD~I 207 (364)
.+.++|+|.|.|.-.-++..+ .++.||.+..|......++..+.. ...-..++.+...-+ .......||+|
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~--pi~~~~~yDlv 278 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRL--PIDIKNGYDLV 278 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccC--CCCcccceeeE
Confidence 356788888866444333322 788999999999999888765110 000011211111111 11112459999
Q ss_pred EEccChHH----------HHHHHHhccCCCcEEEEEEcCC
Q psy7830 208 FFGAGTTE----------VSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 208 i~~~~~~~----------l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
++...+.+ .-..+.+..++||.+|+.....
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 88655533 2246777889999999877554
No 393
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=79.33 E-value=14 Score=35.44 Aligned_cols=91 Identities=23% Similarity=0.232 Sum_probs=54.5
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEE-EEEcCCCCCCCCCCCeeE
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLE-FILKDARWGHAEGGPYDV 206 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~-~~~~D~~~~~~~~~~fD~ 206 (364)
+.+|.+||=.|||. |..+..+++. +|++++.+++..+.+++ + +.+.+- ....+... .....+|+
T Consensus 167 ~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~-~--------g~~~vi~~~~~~~~~--~~~~~~d~ 235 (337)
T cd05283 167 VGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALK-L--------GADEFIATKDPEAMK--KAAGSLDL 235 (337)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-c--------CCcEEecCcchhhhh--hccCCceE
Confidence 57788888877643 4444444544 88999998887777643 2 111110 00001000 01356899
Q ss_pred EEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 207 IFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 207 Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
|+...........+.+.|+++|+++..
T Consensus 236 v~~~~g~~~~~~~~~~~l~~~G~~v~~ 262 (337)
T cd05283 236 IIDTVSASHDLDPYLSLLKPGGTLVLV 262 (337)
T ss_pred EEECCCCcchHHHHHHHhcCCCEEEEE
Confidence 986655444467778999999998864
No 394
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=79.07 E-value=19 Score=35.41 Aligned_cols=93 Identities=18% Similarity=0.102 Sum_probs=54.3
Q ss_pred cCCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEc---C----CCCC
Q psy7830 131 HLQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILK---D----ARWG 197 (364)
Q Consensus 131 ~l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~---D----~~~~ 197 (364)
.+++|.+||-.|+|. |..++.+++. .|++++.+++..+.+++. +.+.+ ..... + +...
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~---------g~~~~v~~~~~~~~~~~~~v~~~ 270 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEM---------GADYVFNPTKMRDCLSGEKVMEV 270 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc---------CCCEEEcccccccccHHHHHHHh
Confidence 367899998887653 3333444444 589999888866555541 11111 11100 1 0111
Q ss_pred CCCCCCeeEEEEccCh-HHHHHHHHhccCCCcEEEEE
Q psy7830 198 HAEGGPYDVIFFGAGT-TEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 198 ~~~~~~fD~Ii~~~~~-~~l~~~l~~~LkpGG~Lvi~ 233 (364)
. ....+|+|+....- ........+.|+++|+++..
T Consensus 271 ~-~g~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 271 T-KGWGADIQVEAAGAPPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred c-CCCCCCEEEECCCCcHHHHHHHHHHHHcCCEEEEE
Confidence 1 12459999865443 34667788899999998863
No 395
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=79.06 E-value=8 Score=36.87 Aligned_cols=92 Identities=14% Similarity=0.129 Sum_probs=55.8
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC----CCCCCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW----GHAEGG 202 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~----~~~~~~ 202 (364)
++++.+||-.|+|. |..+..+++. +|++++.+++..+.+++ + +.+.+ +...+... .....+
T Consensus 160 ~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~-~--------g~~~v-~~~~~~~~~~~~v~~~~~ 229 (338)
T PRK09422 160 IKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKE-V--------GADLT-INSKRVEDVAKIIQEKTG 229 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH-c--------CCcEE-ecccccccHHHHHHHhcC
Confidence 67899999999653 4455555552 89999999988888743 2 11111 11101000 000112
Q ss_pred CeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
.+|.++.+...........+.|+++|+++..
T Consensus 230 ~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~ 260 (338)
T PRK09422 230 GAHAAVVTAVAKAAFNQAVDAVRAGGRVVAV 260 (338)
T ss_pred CCcEEEEeCCCHHHHHHHHHhccCCCEEEEE
Confidence 4785554444556678889999999998864
No 396
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.81 E-value=23 Score=31.65 Aligned_cols=93 Identities=16% Similarity=0.141 Sum_probs=57.2
Q ss_pred CCCEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC--------
Q psy7830 134 NGSRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA-------- 199 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~-------- 199 (364)
.+.+||-.|++ |.++..+++. +|++++.+++..+...+.+.. ..++.++.+|..+...
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~~ 75 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSK-------YGNIHYVVGDVSSTESARNVIEKA 75 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-------cCCeEEEECCCCCHHHHHHHHHHH
Confidence 46789999986 4455444433 899999998776665444433 1367888888764210
Q ss_pred --CCCCeeEEEEccChH-----------------------HHHHHHHhccCCCcEEEEEE
Q psy7830 200 --EGGPYDVIFFGAGTT-----------------------EVSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 200 --~~~~fD~Ii~~~~~~-----------------------~l~~~l~~~LkpGG~Lvi~~ 234 (364)
..+..|.++.+.... .+.+.+.+.++.+|.+++..
T Consensus 76 ~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 76 AKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred HHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 013468777655321 12455666777788777644
No 397
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=78.64 E-value=18 Score=33.82 Aligned_cols=108 Identities=14% Similarity=0.121 Sum_probs=77.7
Q ss_pred ChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC
Q psy7830 116 EPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD 193 (364)
Q Consensus 116 s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D 193 (364)
..|...+..++.+.. +++|.+ |..=|||-.++..+.+. ++..+|+.|.-....++++.. ..++++..+|
T Consensus 72 ~lpa~l~~yl~~i~~-lN~~~~-l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~~-------d~~vrv~~~D 142 (279)
T COG2961 72 DLPAELEPYLDAVRQ-LNPGGG-LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFAG-------DRRVRVLRGD 142 (279)
T ss_pred CchHHHHHHHHHHHH-hCCCCC-cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhCC-------CcceEEEecC
Confidence 455666777777663 566666 88999999999988877 999999999999999998864 4589999999
Q ss_pred CCCC----CCCCCCeeEEEEccChHH------HHHHHHhccC--CCcEEEE
Q psy7830 194 ARWG----HAEGGPYDVIFFGAGTTE------VSKTILSQLK--PNGRIVA 232 (364)
Q Consensus 194 ~~~~----~~~~~~fD~Ii~~~~~~~------l~~~l~~~Lk--pGG~Lvi 232 (364)
.... .++.+.=-+|+++.+++. +.+.+.+.++ ++|+.++
T Consensus 143 G~~~l~a~LPP~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yai 193 (279)
T COG2961 143 GFLALKAHLPPKERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAI 193 (279)
T ss_pred cHHHHhhhCCCCCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEE
Confidence 7632 222344568888888752 4444444443 4666554
No 398
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=78.52 E-value=15 Score=34.88 Aligned_cols=90 Identities=22% Similarity=0.189 Sum_probs=54.1
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC------CCCCCCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD------ARWGHAE 200 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D------~~~~~~~ 200 (364)
+.++.+||-.|+|+ |..+..+++. +|++++.+++..+.+++ + +.+. ++..+ +... ..
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~-~--------g~~~--~~~~~~~~~~~i~~~-~~ 232 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAER-L--------GADH--VLNASDDVVEEVREL-TG 232 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH-h--------CCcE--EEcCCccHHHHHHHH-hC
Confidence 56789999998653 2333334443 78888888877666543 1 1111 11111 1111 11
Q ss_pred CCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 201 GGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 201 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
...+|+|+-............+.|+++|+++..
T Consensus 233 ~~~~dvvld~~g~~~~~~~~~~~l~~~g~~i~~ 265 (340)
T cd05284 233 GRGADAVIDFVGSDETLALAAKLLAKGGRYVIV 265 (340)
T ss_pred CCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEE
Confidence 246999997655455677888999999998853
No 399
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=78.43 E-value=22 Score=34.06 Aligned_cols=91 Identities=21% Similarity=0.203 Sum_probs=54.1
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEcCC----CCCCCCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILKDA----RWGHAEG 201 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~D~----~~~~~~~ 201 (364)
+.++.+||=.|+|. |..+..+++. +|++++.++.....+++. +.+. +.....+. ... ...
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~---------g~~~~v~~~~~~~~~~i~~~-~~~ 233 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKL---------GATHTVNSAKGDAIEQVLEL-TDG 233 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh---------CCCceeccccccHHHHHHHH-hCC
Confidence 56888988877642 3333444444 688899988776666531 1111 11111111 111 122
Q ss_pred CCeeEEEEccChHHHHHHHHhccCCCcEEEE
Q psy7830 202 GPYDVIFFGAGTTEVSKTILSQLKPNGRIVA 232 (364)
Q Consensus 202 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 232 (364)
..+|+|+...........+.+.|+++|+++.
T Consensus 234 ~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 234 RGVDVVIEAVGIPATFELCQELVAPGGHIAN 264 (345)
T ss_pred CCCCEEEECCCCHHHHHHHHHhccCCcEEEE
Confidence 4699998765545567788899999999874
No 400
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=78.06 E-value=14 Score=34.44 Aligned_cols=92 Identities=22% Similarity=0.176 Sum_probs=56.3
Q ss_pred CCCCCEEEEECC--CccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC-CCCCCCCee
Q psy7830 132 LQNGSRVLDIGS--GQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW-GHAEGGPYD 205 (364)
Q Consensus 132 l~~g~~VLDiGc--GsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~-~~~~~~~fD 205 (364)
+.+|.+||-.|+ +.|..+..+++. +|+++..+++..+.+++ ++...+-....+... .......+|
T Consensus 140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~---------~g~~~~~~~~~~~~~~i~~~~~~~d 210 (320)
T cd08243 140 LQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKE---------LGADEVVIDDGAIAEQLRAAPGGFD 210 (320)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh---------cCCcEEEecCccHHHHHHHhCCCce
Confidence 578899999886 346666666666 88999888877666633 111111111111100 000034699
Q ss_pred EEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 206 VIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 206 ~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
+|+.... ........+.|+++|+++..
T Consensus 211 ~vl~~~~-~~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 211 KVLELVG-TATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred EEEECCC-hHHHHHHHHHhccCCEEEEE
Confidence 9986544 35677788999999998653
No 401
>KOG0821|consensus
Probab=78.03 E-value=5.9 Score=36.35 Aligned_cols=68 Identities=10% Similarity=-0.006 Sum_probs=45.1
Q ss_pred HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC
Q psy7830 120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR 195 (364)
Q Consensus 120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~ 195 (364)
++.++..... .-..+-|++||.|+|+++..+... +...+|+|+..+.-.+--.+.. ..+..+..+|+.
T Consensus 38 lT~KIvK~A~--~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa------~~~~~IHh~D~L 108 (326)
T KOG0821|consen 38 LTDKIVKKAG--NLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAA------PGKLRIHHGDVL 108 (326)
T ss_pred HHHHHHHhcc--ccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcC------CcceEEeccccc
Confidence 3344444333 234568999999999999998876 8888999987776655443331 125556666654
No 402
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=77.91 E-value=27 Score=33.85 Aligned_cols=91 Identities=20% Similarity=0.230 Sum_probs=56.1
Q ss_pred CCCCCEEEEECCC-ccHHHHHHHcc---e-EEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC----C--CCC
Q psy7830 132 LQNGSRVLDIGSG-QGYMATAKEWL---S-SVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW----G--HAE 200 (364)
Q Consensus 132 l~~g~~VLDiGcG-sG~~a~~la~~---~-V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~----~--~~~ 200 (364)
+.++.+||-.|+| .|..+..+++. . |++++.++...+.+++ + +.. .++..+... . ...
T Consensus 180 ~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~-~--------g~~--~vv~~~~~~~~~~l~~~~~ 248 (363)
T cd08279 180 VRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR-F--------GAT--HTVNASEDDAVEAVRDLTD 248 (363)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH-h--------CCe--EEeCCCCccHHHHHHHHcC
Confidence 6788999998775 25555566655 4 8899888887766642 2 111 111111100 0 111
Q ss_pred CCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 201 GGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 201 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
...+|+++....-........+.|+++|+++..
T Consensus 249 ~~~vd~vld~~~~~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 249 GRGADYAFEAVGRAATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred CCCCCEEEEcCCChHHHHHHHHHhhcCCeEEEE
Confidence 346999886554355677888999999998754
No 403
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=76.85 E-value=49 Score=33.14 Aligned_cols=107 Identities=14% Similarity=0.088 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEE
Q psy7830 117 PPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFI 190 (364)
Q Consensus 117 ~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~ 190 (364)
.+.....+...+.+......+|+=+|+ |.++..+++. .|+.+|.+++.++..++.. .++.++
T Consensus 213 ~~~~l~~~~~~~~~~~~~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~----------~~~~~i 280 (453)
T PRK09496 213 AREHIRAVMSEFGRLEKPVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL----------PNTLVL 280 (453)
T ss_pred CHHHHHHHHHHhCccCCCCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC----------CCCeEE
Confidence 445556666666544445678888887 4555555443 8999999999888776642 256678
Q ss_pred EcCCCCCC----CCCCCeeEEEEccChH--H-HHHHHHhccCCCcEEEEEEcC
Q psy7830 191 LKDARWGH----AEGGPYDVIFFGAGTT--E-VSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 191 ~~D~~~~~----~~~~~fD~Ii~~~~~~--~-l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
.+|..+.. ..-..+|.|++...-. . +...+.+.+.+. .+++.+.+
T Consensus 281 ~gd~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~-~ii~~~~~ 332 (453)
T PRK09496 281 HGDGTDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAK-KVIALVNR 332 (453)
T ss_pred ECCCCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCC-eEEEEECC
Confidence 88876421 1124688887654322 2 223334445444 44444443
No 404
>KOG2782|consensus
Probab=76.84 E-value=0.89 Score=41.42 Aligned_cols=91 Identities=16% Similarity=0.097 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC
Q psy7830 118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD 193 (364)
Q Consensus 118 P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D 193 (364)
|-+....++.|. ..+|.+.+|.--|.|..+..+.+. ++++.|.+|-+.+.|+..... +-.+.+..+.+.
T Consensus 29 PVm~devl~~ls--pv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~e-----l~~~~l~a~Lg~ 101 (303)
T KOG2782|consen 29 PVMLDEVLDILS--PVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDE-----LMHPTLKAVLGN 101 (303)
T ss_pred ceehhhHHHHcC--CCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHh-----hcchhHHHHHhh
Confidence 557788888887 678999999999999999888776 899999999999888776543 111222222232
Q ss_pred CCCC-------CCCCCCeeEEEEccChHH
Q psy7830 194 ARWG-------HAEGGPYDVIFFGAGTTE 215 (364)
Q Consensus 194 ~~~~-------~~~~~~fD~Ii~~~~~~~ 215 (364)
.... -..+..+|-|+.+..|..
T Consensus 102 Fs~~~~l~~~~gl~~~~vDGiLmDlGcSS 130 (303)
T KOG2782|consen 102 FSYIKSLIADTGLLDVGVDGILMDLGCSS 130 (303)
T ss_pred hHHHHHHHHHhCCCcCCcceEEeecCccc
Confidence 2111 122467898888877765
No 405
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=75.23 E-value=14 Score=35.29 Aligned_cols=95 Identities=22% Similarity=0.135 Sum_probs=56.7
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEcCCCC---CCCCCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILKDARW---GHAEGG 202 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~D~~~---~~~~~~ 202 (364)
..+|++||-.|+|. |..+..+++. +|++++.+++..+.+++. +.+.+ .....+... ......
T Consensus 161 ~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~l---------g~~~~~~~~~~~~~~~~~~~~~~~ 231 (341)
T PRK05396 161 DLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKM---------GATRAVNVAKEDLRDVMAELGMTE 231 (341)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---------CCcEEecCccccHHHHHHHhcCCC
Confidence 35788998887754 5555556654 477888888777665541 11111 001111100 011234
Q ss_pred CeeEEEEccChHHHHHHHHhccCCCcEEEEEEc
Q psy7830 203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVG 235 (364)
Q Consensus 203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~~ 235 (364)
.+|+|+-............+.|+++|.++..-.
T Consensus 232 ~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 232 GFDVGLEMSGAPSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred CCCEEEECCCCHHHHHHHHHHHhcCCEEEEEec
Confidence 689998755555667778899999999887643
No 406
>PRK13699 putative methylase; Provisional
Probab=74.95 E-value=3.7 Score=37.74 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=30.7
Q ss_pred EEEEcCCCCC--CCCCCCeeEEEEccCh---------------------HHHHHHHHhccCCCcEEEEEEc
Q psy7830 188 EFILKDARWG--HAEGGPYDVIFFGAGT---------------------TEVSKTILSQLKPNGRIVAPVG 235 (364)
Q Consensus 188 ~~~~~D~~~~--~~~~~~fD~Ii~~~~~---------------------~~l~~~l~~~LkpGG~Lvi~~~ 235 (364)
+++.+|+.+. ..+++++|+|+.+.++ ...+.++.++|||||.+++...
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~ 73 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYG 73 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 4556666543 1234667777766443 1356788999999999987544
No 407
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=74.34 E-value=37 Score=32.30 Aligned_cols=90 Identities=21% Similarity=0.267 Sum_probs=52.9
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC------CCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG------HAE 200 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~------~~~ 200 (364)
+.++.+||=.|+|. |..++.+++. +|++++.+++....+++ + +.. .+..+-... ...
T Consensus 165 ~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~-~--------g~~---~~~~~~~~~~~~l~~~~~ 232 (344)
T cd08284 165 VRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAA-L--------GAE---PINFEDAEPVERVREATE 232 (344)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH-h--------CCe---EEecCCcCHHHHHHHHhC
Confidence 56789998887542 2333344444 58888888776655543 2 111 111111100 111
Q ss_pred CCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 201 GGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 201 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
...+|+|+-............+.|+++|+++..
T Consensus 233 ~~~~dvvid~~~~~~~~~~~~~~l~~~g~~v~~ 265 (344)
T cd08284 233 GRGADVVLEAVGGAAALDLAFDLVRPGGVISSV 265 (344)
T ss_pred CCCCCEEEECCCCHHHHHHHHHhcccCCEEEEE
Confidence 246899987655556777888999999997753
No 408
>PRK08324 short chain dehydrogenase; Validated
Probab=74.18 E-value=20 Score=38.45 Aligned_cols=71 Identities=18% Similarity=0.078 Sum_probs=45.8
Q ss_pred CCCEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC---------
Q psy7830 134 NGSRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH--------- 198 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~--------- 198 (364)
.|+.||-.|++ |.++..+++. +|+.+|.++..++.+.+.+.. ..++.++.+|..+..
T Consensus 421 ~gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~-------~~~v~~v~~Dvtd~~~v~~~~~~~ 492 (681)
T PRK08324 421 AGKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGG-------PDRALGVACDVTDEAAVQAAFEEA 492 (681)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhc-------cCcEEEEEecCCCHHHHHHHHHHH
Confidence 46788988864 4444444433 899999998877666554432 136778888875421
Q ss_pred -CCCCCeeEEEEccC
Q psy7830 199 -AEGGPYDVIFFGAG 212 (364)
Q Consensus 199 -~~~~~fD~Ii~~~~ 212 (364)
...+.+|+|+.+..
T Consensus 493 ~~~~g~iDvvI~~AG 507 (681)
T PRK08324 493 ALAFGGVDIVVSNAG 507 (681)
T ss_pred HHHcCCCCEEEECCC
Confidence 01246899988765
No 409
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.03 E-value=23 Score=32.58 Aligned_cols=72 Identities=18% Similarity=0.087 Sum_probs=41.1
Q ss_pred CCCEEEEECCCcc-HHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC--------
Q psy7830 134 NGSRVLDIGSGQG-YMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH-------- 198 (364)
Q Consensus 134 ~g~~VLDiGcGsG-~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~-------- 198 (364)
.++.+|-.|+++| .++..+++. +|+.++.++...+..++.... + ..+.++.+|+.+..
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~-----~--~~~~~~~~D~~~~~~v~~~~~~ 81 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEE-----L--DAPIFLPLDVREPGQLEAVFAR 81 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHh-----h--ccceEEecCcCCHHHHHHHHHH
Confidence 4678999998763 555555443 888888876543333332222 1 13446667765421
Q ss_pred --CCCCCeeEEEEccC
Q psy7830 199 --AEGGPYDVIFFGAG 212 (364)
Q Consensus 199 --~~~~~fD~Ii~~~~ 212 (364)
...+..|+++.|..
T Consensus 82 ~~~~~g~ld~lv~nAg 97 (258)
T PRK07533 82 IAEEWGRLDFLLHSIA 97 (258)
T ss_pred HHHHcCCCCEEEEcCc
Confidence 11256798887753
No 410
>KOG1098|consensus
Probab=73.62 E-value=2.6 Score=43.94 Aligned_cols=35 Identities=23% Similarity=0.175 Sum_probs=30.2
Q ss_pred cCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHH
Q psy7830 131 HLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPE 165 (364)
Q Consensus 131 ~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~ 165 (364)
.+.++..|||+||.+|.....+++. -|+|+|+-|-
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi 80 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI 80 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence 3678999999999999999888776 8999998763
No 411
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=73.07 E-value=35 Score=32.44 Aligned_cols=92 Identities=22% Similarity=0.233 Sum_probs=56.8
Q ss_pred CCCCCEEEEECCC-ccHHHHHHHcc---e-EEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC------CCCC
Q psy7830 132 LQNGSRVLDIGSG-QGYMATAKEWL---S-SVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW------GHAE 200 (364)
Q Consensus 132 l~~g~~VLDiGcG-sG~~a~~la~~---~-V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~------~~~~ 200 (364)
+++|.+||-.|+| .|..+..+++. + |++++.+++..+.+++ + +.+ .++..+-.. ....
T Consensus 163 ~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~-~--------g~~--~~~~~~~~~~~~~i~~~~~ 231 (343)
T cd08235 163 IKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKK-L--------GAD--YTIDAAEEDLVEKVRELTD 231 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-h--------CCc--EEecCCccCHHHHHHHHhC
Confidence 6789999988865 34445555555 6 8889888887776643 2 111 111111000 0111
Q ss_pred CCCeeEEEEccChHHHHHHHHhccCCCcEEEEEE
Q psy7830 201 GGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 201 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~ 234 (364)
...+|+|+.............+.|+++|+++...
T Consensus 232 ~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~~ 265 (343)
T cd08235 232 GRGADVVIVATGSPEAQAQALELVRKGGRILFFG 265 (343)
T ss_pred CcCCCEEEECCCChHHHHHHHHHhhcCCEEEEEe
Confidence 2358999876554556777889999999988643
No 412
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=72.40 E-value=33 Score=32.64 Aligned_cols=93 Identities=26% Similarity=0.268 Sum_probs=52.9
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEcCCC-C-----CCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILKDAR-W-----GHA 199 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~D~~-~-----~~~ 199 (364)
++++.+||=.|+|. |..+..+++. .+++++.+++..+.+++. +... +.....+.. . ...
T Consensus 159 ~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~---------g~~~~i~~~~~~~~~~~~~~~~~~ 229 (341)
T cd08262 159 LTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALAM---------GADIVVDPAADSPFAAWAAELARA 229 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc---------CCcEEEcCCCcCHHHHHHHHHHHh
Confidence 67889999887532 2333444444 478889888888776542 1110 110001100 0 011
Q ss_pred CCCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 200 EGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 200 ~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
..+.+|+|+-...-........+.++++|+++..
T Consensus 230 ~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~ 263 (341)
T cd08262 230 GGPKPAVIFECVGAPGLIQQIIEGAPPGGRIVVV 263 (341)
T ss_pred CCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 1346999886543334567778899999998753
No 413
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=71.95 E-value=39 Score=33.02 Aligned_cols=91 Identities=15% Similarity=0.069 Sum_probs=51.1
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEcC--C----CCCCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILKD--A----RWGHA 199 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~D--~----~~~~~ 199 (364)
++++.+||-.|+|. |..+..+++. +|+.++.+++..+.+++ + +.+. +.....+ . ... .
T Consensus 188 ~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~-l--------Ga~~~i~~~~~~~~~~~~v~~~-~ 257 (373)
T cd08299 188 VTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKE-L--------GATECINPQDYKKPIQEVLTEM-T 257 (373)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-c--------CCceEecccccchhHHHHHHHH-h
Confidence 67899999887643 3333444443 68999999888777743 2 2111 1111111 0 011 1
Q ss_pred CCCCeeEEEEccChHHHHHH-HHhccCCCcEEEEE
Q psy7830 200 EGGPYDVIFFGAGTTEVSKT-ILSQLKPNGRIVAP 233 (364)
Q Consensus 200 ~~~~fD~Ii~~~~~~~l~~~-l~~~LkpGG~Lvi~ 233 (364)
...+|+|+-.......+.. +...+++||+++..
T Consensus 258 -~~~~d~vld~~g~~~~~~~~~~~~~~~~G~~v~~ 291 (373)
T cd08299 258 -DGGVDFSFEVIGRLDTMKAALASCHEGYGVSVIV 291 (373)
T ss_pred -CCCCeEEEECCCCcHHHHHHHHhhccCCCEEEEE
Confidence 1358998876554444444 44455678888754
No 414
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=71.63 E-value=54 Score=30.36 Aligned_cols=86 Identities=22% Similarity=0.241 Sum_probs=54.4
Q ss_pred CCCEEEEECCC--ccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830 134 NGSRVLDIGSG--QGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF 208 (364)
Q Consensus 134 ~g~~VLDiGcG--sG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii 208 (364)
+|.+||=.|++ .|..+..+++. +|++++.+++..+.+++ + +...+ +...+ .. ..+.+|+++
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~--------g~~~~-~~~~~--~~--~~~~~d~vl 197 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRE-L--------GAAEV-VVGGS--EL--SGAPVDLVV 197 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-c--------CCcEE-Eeccc--cc--cCCCceEEE
Confidence 58999998874 34555555554 88999888887777765 2 11111 11111 11 124689998
Q ss_pred EccChHHHHHHHHhccCCCcEEEEEE
Q psy7830 209 FGAGTTEVSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 209 ~~~~~~~l~~~l~~~LkpGG~Lvi~~ 234 (364)
-...- .......+.|+++|+++..-
T Consensus 198 ~~~g~-~~~~~~~~~l~~~G~~v~~g 222 (305)
T cd08270 198 DSVGG-PQLARALELLAPGGTVVSVG 222 (305)
T ss_pred ECCCc-HHHHHHHHHhcCCCEEEEEe
Confidence 65443 35677899999999988643
No 415
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=71.54 E-value=15 Score=38.88 Aligned_cols=89 Identities=17% Similarity=0.045 Sum_probs=57.3
Q ss_pred CEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC----CCCCCee
Q psy7830 136 SRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH----AEGGPYD 205 (364)
Q Consensus 136 ~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~----~~~~~fD 205 (364)
.+|+=+|+| ..+..+++. .++.+|.|++.++.+++. ...++.+|+.+.. ..-++.|
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~------------g~~v~~GDat~~~~L~~agi~~A~ 466 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRKY------------GYKVYYGDATQLELLRAAGAEKAE 466 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC------------CCeEEEeeCCCHHHHHhcCCccCC
Confidence 456665555 455544443 899999999999887641 4567889987532 1124678
Q ss_pred EEEEccChHH---HHHHHHhccCCCcEEEEEEcCCC
Q psy7830 206 VIFFGAGTTE---VSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 206 ~Ii~~~~~~~---l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
.+++...-.. ..-...+.+.|...++....+..
T Consensus 467 ~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~~ 502 (601)
T PRK03659 467 AIVITCNEPEDTMKIVELCQQHFPHLHILARARGRV 502 (601)
T ss_pred EEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEeCCHH
Confidence 7776544432 23345566788888888776653
No 416
>KOG1198|consensus
Probab=71.46 E-value=8.8 Score=37.66 Aligned_cols=98 Identities=19% Similarity=0.150 Sum_probs=59.4
Q ss_pred cCCCCCEEEEECCCcc--HHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCC-CEEEEEcCCCCCCCC--CC
Q psy7830 131 HLQNGSRVLDIGSGQG--YMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSK-TLEFILKDARWGHAE--GG 202 (364)
Q Consensus 131 ~l~~g~~VLDiGcGsG--~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~-~v~~~~~D~~~~~~~--~~ 202 (364)
..++|.+||-+|.++| ..++.+|+. ..+..--+.+.++.+++. +.+ -+.+...|..+.... ..
T Consensus 154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~l---------GAd~vvdy~~~~~~e~~kk~~~~ 224 (347)
T KOG1198|consen 154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKL---------GADEVVDYKDENVVELIKKYTGK 224 (347)
T ss_pred ccCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHHc---------CCcEeecCCCHHHHHHHHhhcCC
Confidence 3678899999988765 445666665 466667788888877663 211 122222232222222 45
Q ss_pred CeeEEEEccChHHHHHHHHhccCCCcEEEEEEcCC
Q psy7830 203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
.||+|+-...-......+...++.||..++.....
T Consensus 225 ~~DvVlD~vg~~~~~~~~~~l~~~g~~~~i~~~~~ 259 (347)
T KOG1198|consen 225 GVDVVLDCVGGSTLTKSLSCLLKGGGGAYIGLVGD 259 (347)
T ss_pred CccEEEECCCCCccccchhhhccCCceEEEEeccc
Confidence 79999866555455566666777777666666543
No 417
>KOG3924|consensus
Probab=70.31 E-value=9.7 Score=37.78 Aligned_cols=116 Identities=20% Similarity=0.164 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcC--CCCCC--CCCEE
Q psy7830 117 PPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISR--PDLLQ--SKTLE 188 (364)
Q Consensus 117 ~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~--~~~l~--~~~v~ 188 (364)
+|.....+.+.+. +.+++...|+|+|-|.+...++.. .-+|+++....-+.+..+...+. -.-.| ...++
T Consensus 177 ~~~ql~si~dEl~--~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~ 254 (419)
T KOG3924|consen 177 QLEQLRSIVDELK--LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIE 254 (419)
T ss_pred hHHHHHHHHHHhc--cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCcee
Confidence 3444556666665 789999999999999988777655 66788887666555544332200 00011 23477
Q ss_pred EEEcCCCCCCC---CCCCeeEEEEccChH--HH---HHHHHhccCCCcEEEEEE
Q psy7830 189 FILKDARWGHA---EGGPYDVIFFGAGTT--EV---SKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 189 ~~~~D~~~~~~---~~~~fD~Ii~~~~~~--~l---~~~l~~~LkpGG~Lvi~~ 234 (364)
.+.++...... -....++|++|...- .+ .+++...+++|-+++-+-
T Consensus 255 ~i~gsf~~~~~v~eI~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~ 308 (419)
T KOG3924|consen 255 TIHGSFLDPKRVTEIQTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSK 308 (419)
T ss_pred ecccccCCHHHHHHHhhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEeccc
Confidence 77777653211 124578998876652 22 247888899998887544
No 418
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=69.87 E-value=13 Score=36.97 Aligned_cols=49 Identities=18% Similarity=-0.037 Sum_probs=34.2
Q ss_pred HHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHH
Q psy7830 125 LEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIK 175 (364)
Q Consensus 125 l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~ 175 (364)
++.|. +.++++||-|.+|-......+... +|++||++|..+...+=++.
T Consensus 28 ~~aL~--i~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 28 MEALN--IGPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred HHHhC--CCCCCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHHHHHH
Confidence 34444 789999999976644444444444 99999999988777655443
No 419
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=69.85 E-value=18 Score=33.54 Aligned_cols=92 Identities=23% Similarity=0.246 Sum_probs=54.3
Q ss_pred CCCCCEEEEECCC--ccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEcCCCC---CCCCCC
Q psy7830 132 LQNGSRVLDIGSG--QGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILKDARW---GHAEGG 202 (364)
Q Consensus 132 l~~g~~VLDiGcG--sG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~D~~~---~~~~~~ 202 (364)
+.++.+||-.||. .|..++.+++. .|+.++.+++..+.+++. +... +.....+... ......
T Consensus 137 ~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~---------g~~~~~~~~~~~~~~~i~~~~~~~ 207 (323)
T cd08241 137 LQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARAL---------GADHVIDYRDPDLRERVKALTGGR 207 (323)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHHc---------CCceeeecCCccHHHHHHHHcCCC
Confidence 6788999999982 34455555554 889999988877766431 1111 1111111100 001124
Q ss_pred CeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
.+|+++.+... .....+.+.++++|+++..
T Consensus 208 ~~d~v~~~~g~-~~~~~~~~~~~~~g~~v~~ 237 (323)
T cd08241 208 GVDVVYDPVGG-DVFEASLRSLAWGGRLLVI 237 (323)
T ss_pred CcEEEEECccH-HHHHHHHHhhccCCEEEEE
Confidence 58998865543 4556778889999987753
No 420
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=69.78 E-value=32 Score=32.87 Aligned_cols=93 Identities=10% Similarity=0.084 Sum_probs=52.8
Q ss_pred CEEEEECCCc--cHHHHHHHcc--eEEEEeCCHHHHHHHHHH--HHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830 136 SRVLDIGSGQ--GYMATAKEWL--SSVRQLLLPETLNNSLKN--IKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF 209 (364)
Q Consensus 136 ~~VLDiGcGs--G~~a~~la~~--~V~~vDis~~~l~~a~~~--~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~ 209 (364)
++|+-+|+|. |+++..|++. .|+.++.+++.++..+++ +.-. .............. ....+.||+|+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~-----~~g~~~~~~~~~~~-~~~~~~~D~viv 76 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLV-----EQGQASLYAIPAET-ADAAEPIHRLLL 76 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEe-----eCCcceeeccCCCC-cccccccCEEEE
Confidence 5799999996 5566777766 899999987666665542 1100 00011111111111 111357998876
Q ss_pred ccCh---HHHHHHHHhccCCCcEEEEEE
Q psy7830 210 GAGT---TEVSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 210 ~~~~---~~l~~~l~~~LkpGG~Lvi~~ 234 (364)
..-. ...++.+...+.++..++..-
T Consensus 77 ~vK~~~~~~al~~l~~~l~~~t~vv~lQ 104 (305)
T PRK05708 77 ACKAYDAEPAVASLAHRLAPGAELLLLQ 104 (305)
T ss_pred ECCHHhHHHHHHHHHhhCCCCCEEEEEe
Confidence 5333 345677888888887655433
No 421
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=69.76 E-value=76 Score=29.42 Aligned_cols=91 Identities=20% Similarity=0.173 Sum_probs=53.1
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc---e-EEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC------CCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL---S-SVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG------HAE 200 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~---~-V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~------~~~ 200 (364)
++++.+||-.|+|. |..+..+++. + |+++..+++..+.+++ ++.. .++....... ...
T Consensus 127 ~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~---------~g~~--~~~~~~~~~~~~~l~~~~~ 195 (312)
T cd08269 127 IRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARE---------LGAT--EVVTDDSEAIVERVRELTG 195 (312)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH---------hCCc--eEecCCCcCHHHHHHHHcC
Confidence 67889999887532 2333334443 6 8888888776664432 1111 1111111000 111
Q ss_pred CCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 201 GGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 201 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
...+|+++-............+.|+++|+++..
T Consensus 196 ~~~vd~vld~~g~~~~~~~~~~~l~~~g~~~~~ 228 (312)
T cd08269 196 GAGADVVIEAVGHQWPLDLAGELVAERGRLVIF 228 (312)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 245999987655555677788999999998864
No 422
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=69.68 E-value=26 Score=33.42 Aligned_cols=94 Identities=19% Similarity=0.191 Sum_probs=58.4
Q ss_pred CCCCCEEEEECCCc--cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc-CCCC-C--CCCCC
Q psy7830 132 LQNGSRVLDIGSGQ--GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK-DARW-G--HAEGG 202 (364)
Q Consensus 132 l~~g~~VLDiGcGs--G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~-D~~~-~--~~~~~ 202 (364)
++++.+||=.|+|+ |..+..+++. +|+.+..+++..+.+++ + +.+.+--... |... . .....
T Consensus 163 ~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~--------g~~~v~~~~~~~~~~~~~~~~~~~ 233 (341)
T cd08297 163 LKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKE-L--------GADAFVDFKKSDDVEAVKELTGGG 233 (341)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-c--------CCcEEEcCCCccHHHHHHHHhcCC
Confidence 67889999998864 5666666666 89999988877666532 2 1111110111 1100 0 11134
Q ss_pred CeeEEEEccChHHHHHHHHhccCCCcEEEEEE
Q psy7830 203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~ 234 (364)
.+|+|+.............+.++++|+++..-
T Consensus 234 ~vd~vl~~~~~~~~~~~~~~~l~~~g~~v~~g 265 (341)
T cd08297 234 GAHAVVVTAVSAAAYEQALDYLRPGGTLVCVG 265 (341)
T ss_pred CCCEEEEcCCchHHHHHHHHHhhcCCEEEEec
Confidence 69999864554566777889999999998653
No 423
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=69.32 E-value=17 Score=32.83 Aligned_cols=74 Identities=15% Similarity=0.092 Sum_probs=46.3
Q ss_pred CCCCEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC--------
Q psy7830 133 QNGSRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH-------- 198 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~-------- 198 (364)
.++.+||=.|+ +|.++..+++. +|++++.++..++...+.+.. .+..++.++..|+....
T Consensus 10 ~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~~d~~~~~~~~~~~~~ 83 (247)
T PRK08945 10 LKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEA-----AGGPQPAIIPLDLLTATPQNYQQLA 83 (247)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHh-----cCCCCceEEEecccCCCHHHHHHHH
Confidence 46788999995 55666555443 899999998777666555544 12235667777764211
Q ss_pred ----CCCCCeeEEEEccC
Q psy7830 199 ----AEGGPYDVIFFGAG 212 (364)
Q Consensus 199 ----~~~~~fD~Ii~~~~ 212 (364)
...++.|.|+.+..
T Consensus 84 ~~~~~~~~~id~vi~~Ag 101 (247)
T PRK08945 84 DTIEEQFGRLDGVLHNAG 101 (247)
T ss_pred HHHHHHhCCCCEEEECCc
Confidence 11246798887653
No 424
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=68.73 E-value=7.6 Score=35.75 Aligned_cols=52 Identities=10% Similarity=0.034 Sum_probs=34.5
Q ss_pred HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHH
Q psy7830 121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNI 174 (364)
Q Consensus 121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~ 174 (364)
+..+++.+... ...+++|+-||+|..+..+... .|+.-|+++..+...+.-+
T Consensus 9 ~~~I~~~ip~~--~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~~l 62 (260)
T PF02086_consen 9 AKWIIELIPKN--KHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKAVL 62 (260)
T ss_dssp HHHHHHHS-S---S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHHHcCCC--CCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHHHH
Confidence 34445544310 6889999999999999888644 9999999999888777443
No 425
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=68.54 E-value=29 Score=33.10 Aligned_cols=92 Identities=17% Similarity=0.166 Sum_probs=53.6
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEcC----CCCCCCCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILKD----ARWGHAEG 201 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~D----~~~~~~~~ 201 (364)
+.+|.+||=.|||. |..+..+++. .+++++.+++..+.+++ + +.+. +.....+ +.... ..
T Consensus 166 ~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~-~--------ga~~v~~~~~~~~~~~i~~~~-~~ 235 (345)
T cd08287 166 VRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALARE-F--------GATDIVAERGEEAVARVRELT-GG 235 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-c--------CCceEecCCcccHHHHHHHhc-CC
Confidence 56788888877653 3444445554 48899988766555543 1 1110 1100001 01111 22
Q ss_pred CCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 202 GPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 202 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
..+|+++....-........+.++++|+++..
T Consensus 236 ~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~ 267 (345)
T cd08287 236 VGADAVLECVGTQESMEQAIAIARPGGRVGYV 267 (345)
T ss_pred CCCCEEEECCCCHHHHHHHHHhhccCCEEEEe
Confidence 45899986554455778889999999998753
No 426
>KOG1201|consensus
Probab=68.38 E-value=21 Score=34.16 Aligned_cols=73 Identities=22% Similarity=0.185 Sum_probs=55.0
Q ss_pred CCCEEEEECCCccH---HHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC----------
Q psy7830 134 NGSRVLDIGSGQGY---MATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH---------- 198 (364)
Q Consensus 134 ~g~~VLDiGcGsG~---~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~---------- 198 (364)
.|..||-=|.|+|. ++..+|++ ++...|++++-.....+.+++ .| ++..+.+|+.+..
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~-----~g--~~~~y~cdis~~eei~~~a~~Vk 109 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRK-----IG--EAKAYTCDISDREEIYRLAKKVK 109 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHh-----cC--ceeEEEecCCCHHHHHHHHHHHH
Confidence 57889999999883 45666666 788999999999888888776 22 6888888886531
Q ss_pred CCCCCeeEEEEccCh
Q psy7830 199 AEGGPYDVIFFGAGT 213 (364)
Q Consensus 199 ~~~~~fD~Ii~~~~~ 213 (364)
.+-+..|+++.|+..
T Consensus 110 ~e~G~V~ILVNNAGI 124 (300)
T KOG1201|consen 110 KEVGDVDILVNNAGI 124 (300)
T ss_pred HhcCCceEEEecccc
Confidence 123678999888664
No 427
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.37 E-value=24 Score=32.39 Aligned_cols=70 Identities=14% Similarity=0.079 Sum_probs=40.2
Q ss_pred CCCEEEEECCC-ccHHHHHHHcc------eEEEEeCCH--HHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC------
Q psy7830 134 NGSRVLDIGSG-QGYMATAKEWL------SSVRQLLLP--ETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH------ 198 (364)
Q Consensus 134 ~g~~VLDiGcG-sG~~a~~la~~------~V~~vDis~--~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~------ 198 (364)
.+..+|-.|+| ++.++..+++. +|+.++.+. +.++...+.+ + .++.++..|+.+..
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~--------~-~~~~~~~~Dv~~~~~i~~~~ 76 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL--------P-EPAPVLELDVTNEEHLASLA 76 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc--------C-CCCcEEeCCCCCHHHHHHHH
Confidence 36788999984 45565555543 888887653 3344333322 1 14556777875421
Q ss_pred ----CCCCCeeEEEEccC
Q psy7830 199 ----AEGGPYDVIFFGAG 212 (364)
Q Consensus 199 ----~~~~~fD~Ii~~~~ 212 (364)
...+..|+++.|..
T Consensus 77 ~~~~~~~g~iD~li~nAG 94 (256)
T PRK07889 77 DRVREHVDGLDGVVHSIG 94 (256)
T ss_pred HHHHHHcCCCcEEEEccc
Confidence 11256888877653
No 428
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=68.10 E-value=17 Score=34.81 Aligned_cols=45 Identities=22% Similarity=0.168 Sum_probs=37.4
Q ss_pred CCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHh
Q psy7830 132 LQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKI 176 (364)
Q Consensus 132 l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~ 176 (364)
+..|.+|.-+|+|--.....+++. +|.+||+++..+...+-++..
T Consensus 61 ~g~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 61 LGIGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred cCCCcEEEEecCCcchHHHHhhcCCceeEEEeCCHHHHHHHHHHHHH
Confidence 578999999999966677777777 999999999998887766654
No 429
>KOG2912|consensus
Probab=68.01 E-value=15 Score=35.67 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=45.6
Q ss_pred EEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc--------CCCCCCCCCCCeeE
Q psy7830 139 LDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK--------DARWGHAEGGPYDV 206 (364)
Q Consensus 139 LDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~--------D~~~~~~~~~~fD~ 206 (364)
+|||.|.-.+-..+... ...++|++...+..|++|..+|. +. ..+.++.. |...... +..||.
T Consensus 107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~---ls-s~ikvV~~~~~ktll~d~~~~~~-e~~ydF 181 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNN---LS-SLIKVVKVEPQKTLLMDALKEES-EIIYDF 181 (419)
T ss_pred eeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccc---cc-cceeeEEecchhhcchhhhccCc-cceeeE
Confidence 68887654443333332 78899999999999999998843 22 34555444 2222211 345999
Q ss_pred EEEccCh
Q psy7830 207 IFFGAGT 213 (364)
Q Consensus 207 Ii~~~~~ 213 (364)
++||.++
T Consensus 182 cMcNPPF 188 (419)
T KOG2912|consen 182 CMCNPPF 188 (419)
T ss_pred EecCCch
Confidence 9999887
No 430
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=67.82 E-value=30 Score=30.48 Aligned_cols=93 Identities=14% Similarity=0.034 Sum_probs=47.3
Q ss_pred CCCEEEEECCCccHHHHHH----Hcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC---CCCCCCe
Q psy7830 134 NGSRVLDIGSGQGYMATAK----EWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG---HAEGGPY 204 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~l----a~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~---~~~~~~f 204 (364)
.+.+++=+|+ +|..+..+ ++. +|+.++.+++..+...+.+... ....+...|..+. ...-..+
T Consensus 27 ~~~~vlVlGg-tG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 98 (194)
T cd01078 27 KGKTAVVLGG-TGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRAR-------FGEGVGAVETSDDAARAAAIKGA 98 (194)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhh-------cCCcEEEeeCCCHHHHHHHHhcC
Confidence 5678999985 23333333 333 8888888877666655544321 1222333333221 0111357
Q ss_pred eEEEEccChHHH-HHHHHhccCCCcEEEEEEc
Q psy7830 205 DVIFFGAGTTEV-SKTILSQLKPNGRIVAPVG 235 (364)
Q Consensus 205 D~Ii~~~~~~~l-~~~l~~~LkpGG~Lvi~~~ 235 (364)
|+|++..+.... +.......++ |.+++-+.
T Consensus 99 diVi~at~~g~~~~~~~~~~~~~-~~vv~D~~ 129 (194)
T cd01078 99 DVVFAAGAAGVELLEKLAWAPKP-LAVAADVN 129 (194)
T ss_pred CEEEECCCCCceechhhhcccCc-eeEEEEcc
Confidence 998887665442 2222223344 66666543
No 431
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.50 E-value=36 Score=31.14 Aligned_cols=70 Identities=11% Similarity=0.043 Sum_probs=37.7
Q ss_pred CCCEEEEECCCc-cHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC--------
Q psy7830 134 NGSRVLDIGSGQ-GYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH-------- 198 (364)
Q Consensus 134 ~g~~VLDiGcGs-G~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~-------- 198 (364)
.++.+|-.|.++ +.++..+++. +|+.++.+....+.+++. ...++.++..|+.+..
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~---------~~~~~~~~~~Dl~~~~~v~~~~~~ 76 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKL---------VDEEDLLVECDVASDESIERAFAT 76 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhh---------ccCceeEEeCCCCCHHHHHHHHHH
Confidence 466788888763 3444444433 788777764322222211 1135667778875421
Q ss_pred --CCCCCeeEEEEccC
Q psy7830 199 --AEGGPYDVIFFGAG 212 (364)
Q Consensus 199 --~~~~~fD~Ii~~~~ 212 (364)
...+..|+++.|..
T Consensus 77 ~~~~~g~iD~lv~nAg 92 (252)
T PRK06079 77 IKERVGKIDGIVHAIA 92 (252)
T ss_pred HHHHhCCCCEEEEccc
Confidence 11246788876653
No 432
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.27 E-value=38 Score=31.09 Aligned_cols=70 Identities=10% Similarity=0.019 Sum_probs=39.1
Q ss_pred CCCEEEEECCCc-cHHHHHHHcc------eEEEEeCCH---HHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC-----
Q psy7830 134 NGSRVLDIGSGQ-GYMATAKEWL------SSVRQLLLP---ETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH----- 198 (364)
Q Consensus 134 ~g~~VLDiGcGs-G~~a~~la~~------~V~~vDis~---~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~----- 198 (364)
.++.+|-.|+++ +.++..+++. +|+.++.+. +.++...+.+. ..++.++..|+.+..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~~Dv~d~~~v~~~ 77 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE--------GQESLLLPCDVTSDEEITAC 77 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC--------CCceEEEecCCCCHHHHHHH
Confidence 467889899873 5555555544 777776542 33333322211 135777778875421
Q ss_pred -----CCCCCeeEEEEcc
Q psy7830 199 -----AEGGPYDVIFFGA 211 (364)
Q Consensus 199 -----~~~~~fD~Ii~~~ 211 (364)
...++.|+++.|.
T Consensus 78 ~~~~~~~~g~ld~lv~na 95 (257)
T PRK08594 78 FETIKEEVGVIHGVAHCI 95 (257)
T ss_pred HHHHHHhCCCccEEEECc
Confidence 1125688887654
No 433
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=67.04 E-value=11 Score=38.42 Aligned_cols=83 Identities=12% Similarity=0.059 Sum_probs=53.3
Q ss_pred CCCCEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeE
Q psy7830 133 QNGSRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDV 206 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~ 206 (364)
-.|.+|+-+|+|. .+..+++. +|+.+|.++.....+.. . .+++. +..+. -...|+
T Consensus 252 LaGKtVgVIG~G~--IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~---~---------G~~~~--~leel---l~~ADI 312 (476)
T PTZ00075 252 IAGKTVVVCGYGD--VGKGCAQALRGFGARVVVTEIDPICALQAAM---E---------GYQVV--TLEDV---VETADI 312 (476)
T ss_pred cCCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCchhHHHHHh---c---------Cceec--cHHHH---HhcCCE
Confidence 4789999999996 33333332 89999998775433322 1 12221 22111 135799
Q ss_pred EEEccChHHHH-HHHHhccCCCcEEEEEE
Q psy7830 207 IFFGAGTTEVS-KTILSQLKPNGRIVAPV 234 (364)
Q Consensus 207 Ii~~~~~~~l~-~~l~~~LkpGG~Lvi~~ 234 (364)
|+......+++ ....+.+|||++|+-.-
T Consensus 313 VI~atGt~~iI~~e~~~~MKpGAiLINvG 341 (476)
T PTZ00075 313 FVTATGNKDIITLEHMRRMKNNAIVGNIG 341 (476)
T ss_pred EEECCCcccccCHHHHhccCCCcEEEEcC
Confidence 98876666665 58889999999988643
No 434
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=66.25 E-value=38 Score=31.11 Aligned_cols=91 Identities=13% Similarity=0.081 Sum_probs=60.2
Q ss_pred CCCCEEEEECCCccHHH--HHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeE
Q psy7830 133 QNGSRVLDIGSGQGYMA--TAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDV 206 (364)
Q Consensus 133 ~~g~~VLDiGcGsG~~a--~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~ 206 (364)
..+.+||-+|.|.=..- ..+.+. .|++-++++++.+.++. .+++++..+...... ..+++
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~------------~~i~~~~r~~~~~dl--~g~~L 88 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKY------------GNLKLIKGNYDKEFI--KDKHL 88 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhC------------CCEEEEeCCCChHHh--CCCcE
Confidence 35789999998875443 223333 66667888887654331 368888766543222 45788
Q ss_pred EEEccChHHHHHHHHhccCCCcEEEEEEcCC
Q psy7830 207 IFFGAGTTEVSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 207 Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
|++...-+.+-..+.+..+.-|.++..+..+
T Consensus 89 ViaATdD~~vN~~I~~~a~~~~~lvn~vd~p 119 (223)
T PRK05562 89 IVIATDDEKLNNKIRKHCDRLYKLYIDCSDY 119 (223)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCeEEEcCCc
Confidence 8887777777788888877777777666544
No 435
>PRK07806 short chain dehydrogenase; Provisional
Probab=66.04 E-value=59 Score=29.19 Aligned_cols=94 Identities=16% Similarity=0.151 Sum_probs=51.6
Q ss_pred CCCEEEEECCCccHHHHHHHcc------eEEEEeCCH-HHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC-------
Q psy7830 134 NGSRVLDIGSGQGYMATAKEWL------SSVRQLLLP-ETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA------- 199 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~~------~V~~vDis~-~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~------- 199 (364)
.+.++|-.|+. |.++..+++. +|++++.+. ...+.....+.. .+ .++.++.+|+.+...
T Consensus 5 ~~k~vlItGas-ggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~-----~~-~~~~~~~~D~~~~~~~~~~~~~ 77 (248)
T PRK07806 5 PGKTALVTGSS-RGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEA-----AG-GRASAVGADLTDEESVAALMDT 77 (248)
T ss_pred CCcEEEEECCC-CcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHh-----cC-CceEEEEcCCCCHHHHHHHHHH
Confidence 35688888864 4455444433 788877654 333333333332 11 357778888764210
Q ss_pred ---CCCCeeEEEEccChH-------------------HHHHHHHhccCCCcEEEEEE
Q psy7830 200 ---EGGPYDVIFFGAGTT-------------------EVSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 200 ---~~~~fD~Ii~~~~~~-------------------~l~~~l~~~LkpGG~Lvi~~ 234 (364)
..+..|+|+.+.... .+.+.+.+.++.+|++++..
T Consensus 78 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 78 AREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred HHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 013578777654321 24566666666667766543
No 436
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=65.92 E-value=67 Score=30.61 Aligned_cols=92 Identities=18% Similarity=0.174 Sum_probs=54.9
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEE-cCCCC-CC-CCCCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFIL-KDARW-GH-AEGGP 203 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~-~D~~~-~~-~~~~~ 203 (364)
+.++.+||-.|+|. |..+..+++. +|++++.+++..+.+++ + +...+ .... .+... .. ...+.
T Consensus 163 ~~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~-~--------g~~~~i~~~~~~~~~~~~~~~~~~~ 233 (345)
T cd08260 163 VKPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARE-L--------GAVATVNASEVEDVAAAVRDLTGGG 233 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH-h--------CCCEEEccccchhHHHHHHHHhCCC
Confidence 56788999998642 3444455554 88999998887777743 2 11111 1111 11100 00 01126
Q ss_pred eeEEEEccChHHHHHHHHhccCCCcEEEE
Q psy7830 204 YDVIFFGAGTTEVSKTILSQLKPNGRIVA 232 (364)
Q Consensus 204 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 232 (364)
+|+|+.............+.|+++|+++.
T Consensus 234 ~d~vi~~~g~~~~~~~~~~~l~~~g~~i~ 262 (345)
T cd08260 234 AHVSVDALGIPETCRNSVASLRKRGRHVQ 262 (345)
T ss_pred CCEEEEcCCCHHHHHHHHHHhhcCCEEEE
Confidence 99998765434566778889999999775
No 437
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=65.68 E-value=10 Score=31.82 Aligned_cols=34 Identities=15% Similarity=0.046 Sum_probs=24.0
Q ss_pred EECCCcc--HHHHHHH--cc----eEEEEeCCHHHHHHHHHH
Q psy7830 140 DIGSGQG--YMATAKE--WL----SSVRQLLLPETLNNSLKN 173 (364)
Q Consensus 140 DiGcGsG--~~a~~la--~~----~V~~vDis~~~l~~a~~~ 173 (364)
|+|+..| ..+..+. .. +|+++|.+|..++..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5555443 22 899999999999999999
No 438
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=65.08 E-value=7 Score=36.82 Aligned_cols=94 Identities=14% Similarity=0.082 Sum_probs=53.5
Q ss_pred EEEEECCCc--cHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCC-----CCCCC-------CCEEEEEcCCCCCCCC
Q psy7830 137 RVLDIGSGQ--GYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRP-----DLLQS-------KTLEFILKDARWGHAE 200 (364)
Q Consensus 137 ~VLDiGcGs--G~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~-----~~l~~-------~~v~~~~~D~~~~~~~ 200 (364)
+|-=||+|. +.++..++.. .|+.+|++++.++.++++++.... ..+.. .++.+ ..|...
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~---- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD---- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH----
Confidence 577788874 3344444444 899999999999776643322100 00000 12332 223211
Q ss_pred CCCeeEEEEccCh-----HHHHHHHHhccCCCcEEEEEEc
Q psy7830 201 GGPYDVIFFGAGT-----TEVSKTILSQLKPNGRIVAPVG 235 (364)
Q Consensus 201 ~~~fD~Ii~~~~~-----~~l~~~l~~~LkpGG~Lvi~~~ 235 (364)
....|+|+....- +.++.++.+.++++..++..+.
T Consensus 80 ~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts 119 (282)
T PRK05808 80 LKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTS 119 (282)
T ss_pred hccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 2457998876542 3577788888888877744333
No 439
>PRK06128 oxidoreductase; Provisional
Probab=65.04 E-value=49 Score=31.13 Aligned_cols=93 Identities=18% Similarity=0.194 Sum_probs=51.7
Q ss_pred CCCEEEEECCCccHHHHHHHcc------eEEEEeCCHH--HHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC-------
Q psy7830 134 NGSRVLDIGSGQGYMATAKEWL------SSVRQLLLPE--TLNNSLKNIKISRPDLLQSKTLEFILKDARWGH------- 198 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~~------~V~~vDis~~--~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~------- 198 (364)
.+++||-.|++ |.++..+++. +|+.+..+.. ..+...+.+.. .+ .++.++.+|+.+..
T Consensus 54 ~~k~vlITGas-~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~Dl~~~~~v~~~~~ 126 (300)
T PRK06128 54 QGRKALITGAD-SGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQA-----EG-RKAVALPGDLKDEAFCRQLVE 126 (300)
T ss_pred CCCEEEEecCC-CcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHH-----cC-CeEEEEecCCCCHHHHHHHHH
Confidence 46789988864 4455444443 6766655432 22333333332 11 35777888876421
Q ss_pred ---CCCCCeeEEEEccChH--------------------------HHHHHHHhccCCCcEEEEE
Q psy7830 199 ---AEGGPYDVIFFGAGTT--------------------------EVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 199 ---~~~~~fD~Ii~~~~~~--------------------------~l~~~l~~~LkpGG~Lvi~ 233 (364)
...+..|+++.|.... .+.+.+.+.++.+|.+++.
T Consensus 127 ~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 127 RAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred HHHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence 0124679988765421 0335666777788887764
No 440
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=64.98 E-value=32 Score=31.66 Aligned_cols=91 Identities=20% Similarity=0.244 Sum_probs=51.3
Q ss_pred CCCCCEEEEECCC--ccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEcCCCCCCCCCCCee
Q psy7830 132 LQNGSRVLDIGSG--QGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILKDARWGHAEGGPYD 205 (364)
Q Consensus 132 l~~g~~VLDiGcG--sG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~D~~~~~~~~~~fD 205 (364)
+.++.+||=.|+. .|..+..+++. +|+.++.++ ..+.+++ + +... +.....+... ......+|
T Consensus 142 ~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~~-~--------g~~~~~~~~~~~~~~-~~~~~~~d 210 (309)
T cd05289 142 LKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLRS-L--------GADEVIDYTKGDFER-AAAPGGVD 210 (309)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHHH-c--------CCCEEEeCCCCchhh-ccCCCCce
Confidence 5688999988862 34445555554 777777665 4444422 1 1111 1111111111 11234689
Q ss_pred EEEEccChHHHHHHHHhccCCCcEEEEEE
Q psy7830 206 VIFFGAGTTEVSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 206 ~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~ 234 (364)
+++....-. ......+.++++|.++..-
T Consensus 211 ~v~~~~~~~-~~~~~~~~l~~~g~~v~~g 238 (309)
T cd05289 211 AVLDTVGGE-TLARSLALVKPGGRLVSIA 238 (309)
T ss_pred EEEECCchH-HHHHHHHHHhcCcEEEEEc
Confidence 988654433 6677888999999987543
No 441
>PRK08703 short chain dehydrogenase; Provisional
Probab=64.86 E-value=29 Score=31.16 Aligned_cols=56 Identities=11% Similarity=-0.038 Sum_probs=34.7
Q ss_pred CCCEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC
Q psy7830 134 NGSRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR 195 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~ 195 (364)
.+.+||-.||+ |.++..+++. +|+.++.++...+...+.+.. .+...+.++..|..
T Consensus 5 ~~k~vlItG~s-ggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~~D~~ 66 (239)
T PRK08703 5 SDKTILVTGAS-QGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVE-----AGHPEPFAIRFDLM 66 (239)
T ss_pred CCCEEEEECCC-CcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHH-----cCCCCcceEEeeec
Confidence 46789999964 5555444443 899999998877666555543 11124455556653
No 442
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=64.82 E-value=53 Score=30.81 Aligned_cols=93 Identities=15% Similarity=0.104 Sum_probs=48.9
Q ss_pred CEEEEECCCccH--HHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEcc
Q psy7830 136 SRVLDIGSGQGY--MATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGA 211 (364)
Q Consensus 136 ~~VLDiGcGsG~--~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~ 211 (364)
++|+=+|+|.-. ++..+++. .|+.++.+++.++..+++- .. +....... .............+|+|+...
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g-~~----~~~~~~~~-~~~~~~~~~~~~~~d~vila~ 74 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENG-LR----LEDGEITV-PVLAADDPAELGPQDLVILAV 74 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcC-Cc----ccCCceee-cccCCCChhHcCCCCEEEEec
Confidence 468889988632 33444444 8999999877766554421 00 00001110 000011111125689988754
Q ss_pred C---hHHHHHHHHhccCCCcEEEEEE
Q psy7830 212 G---TTEVSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 212 ~---~~~l~~~l~~~LkpGG~Lvi~~ 234 (364)
. ...+++.+...+.++..++...
T Consensus 75 k~~~~~~~~~~l~~~l~~~~~iv~~~ 100 (304)
T PRK06522 75 KAYQLPAALPSLAPLLGPDTPVLFLQ 100 (304)
T ss_pred ccccHHHHHHHHhhhcCCCCEEEEec
Confidence 4 3456677777777766655433
No 443
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=64.27 E-value=16 Score=35.38 Aligned_cols=130 Identities=17% Similarity=0.095 Sum_probs=68.1
Q ss_pred CEEEEECCCcc--HHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCC--CC------CCCEEEEEcCCCCCCCCCCC
Q psy7830 136 SRVLDIGSGQG--YMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDL--LQ------SKTLEFILKDARWGHAEGGP 203 (364)
Q Consensus 136 ~~VLDiGcGsG--~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~--l~------~~~v~~~~~D~~~~~~~~~~ 203 (364)
.+|--||+|+= .++..++.. .|+..|.+++.++.+++.+....... .+ ..++++.. |..+ .-..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~---av~~ 83 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEA---CVAD 83 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHH---HhcC
Confidence 47888898852 233334444 99999999998887766543210000 00 01223221 2111 1135
Q ss_pred eeEEEEccCh-----HHHHHHHHhccCCCcEEEEEEcCCCcceEEEEEecCCCceeEEEeeceeEEeccCc
Q psy7830 204 YDVIFFGAGT-----TEVSKTILSQLKPNGRIVAPVGNVWRQNLSVIDKGPDGSISSKILRRVSSDFLCNL 269 (364)
Q Consensus 204 fD~Ii~~~~~-----~~l~~~l~~~LkpGG~Lvi~~~~~~~~~l~~~~~~~~g~~~~~~l~~~~f~~l~~~ 269 (364)
.|+|+-+.+- +.+...+.+.++|+.+|.-++..-...++....+..+.-+..+.+-+..++|+.+.
T Consensus 84 aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEV 154 (321)
T PRK07066 84 ADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEV 154 (321)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEE
Confidence 7898876542 34678888899998744433332112222222222233233455556666777554
No 444
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=64.07 E-value=21 Score=32.03 Aligned_cols=30 Identities=30% Similarity=0.027 Sum_probs=20.4
Q ss_pred CCCEEEEECCCc-cHH-HHHHHcc---eEEEEeCC
Q psy7830 134 NGSRVLDIGSGQ-GYM-ATAKEWL---SSVRQLLL 163 (364)
Q Consensus 134 ~g~~VLDiGcGs-G~~-a~~la~~---~V~~vDis 163 (364)
.+.+||=+|||. |.. +..|+.. +++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 467899999984 332 3334444 88889887
No 445
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=64.02 E-value=14 Score=34.71 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=28.2
Q ss_pred CCCCCEEEEECCCccHHHHHHHcc---------eEEEEeCCHHH
Q psy7830 132 LQNGSRVLDIGSGQGYMATAKEWL---------SSVRQLLLPET 166 (364)
Q Consensus 132 l~~g~~VLDiGcGsG~~a~~la~~---------~V~~vDis~~~ 166 (364)
+.++..++|+|||.|.++.+++.. .++.||.....
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R 59 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNR 59 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCccc
Confidence 467789999999999999888765 57888886543
No 446
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=63.72 E-value=56 Score=31.98 Aligned_cols=96 Identities=20% Similarity=0.216 Sum_probs=55.6
Q ss_pred CCCCCEEEEECC--CccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHh-cCCCCCCCCCEE-E-EEcC----------
Q psy7830 132 LQNGSRVLDIGS--GQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKI-SRPDLLQSKTLE-F-ILKD---------- 193 (364)
Q Consensus 132 l~~g~~VLDiGc--GsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~-~~~~~l~~~~v~-~-~~~D---------- 193 (364)
++++.+||-.|+ +.|..+..+++. ++++++.+++..+.+++ +.. .. +...... + ...|
T Consensus 191 ~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~-~G~~~~---i~~~~~~~~~~~~~~~~~~~~~~~ 266 (393)
T cd08246 191 VKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRA-LGAEGV---INRRDFDHWGVLPDVNSEAYTAWT 266 (393)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH-cCCCEE---Ecccccccccccccccchhhhhhh
Confidence 578899999997 235555556665 77888999888888765 321 00 0000000 0 0000
Q ss_pred ---------CCCCCCCCC-CeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 194 ---------ARWGHAEGG-PYDVIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 194 ---------~~~~~~~~~-~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
+... .... .+|+|+.... ........+.++++|+++..
T Consensus 267 ~~~~~~~~~v~~l-~~~~~g~d~vid~~g-~~~~~~~~~~l~~~G~~v~~ 314 (393)
T cd08246 267 KEARRFGKAIWDI-LGGREDPDIVFEHPG-RATFPTSVFVCDRGGMVVIC 314 (393)
T ss_pred hccchHHHHHHHH-hCCCCCCeEEEECCc-hHhHHHHHHHhccCCEEEEE
Confidence 0000 1122 5899886544 34566778999999998864
No 447
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=63.26 E-value=54 Score=31.42 Aligned_cols=91 Identities=18% Similarity=0.104 Sum_probs=52.7
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC----C--CCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW----G--HAE 200 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~----~--~~~ 200 (364)
+.++.+||-.|+|. |..+..+++. .++++|.+++..+.+++. +... ++..+... . ...
T Consensus 172 ~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~---------g~~~--v~~~~~~~~~~~~~~~~~ 240 (350)
T cd08256 172 IKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKF---------GADV--VLNPPEVDVVEKIKELTG 240 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHc---------CCcE--EecCCCcCHHHHHHHHhC
Confidence 57888888766532 3334444544 578899888777655431 1111 11111000 0 011
Q ss_pred CCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 201 GGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 201 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
...+|+|+-...-........+.++++|+++..
T Consensus 241 ~~~vdvvld~~g~~~~~~~~~~~l~~~G~~v~~ 273 (350)
T cd08256 241 GYGCDIYIEATGHPSAVEQGLNMIRKLGRFVEF 273 (350)
T ss_pred CCCCCEEEECCCChHHHHHHHHHhhcCCEEEEE
Confidence 235899986554345677789999999998763
No 448
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=62.75 E-value=70 Score=26.48 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=24.7
Q ss_pred CCeeEEEEccChHHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830 202 GPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 202 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
..||+|+....-......+.+.++.-|.-++..+..+
T Consensus 88 ~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g 124 (143)
T cd01483 88 DGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLG 124 (143)
T ss_pred cCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 4799999766555544555566666677777776654
No 449
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=62.33 E-value=74 Score=29.85 Aligned_cols=92 Identities=21% Similarity=0.225 Sum_probs=51.6
Q ss_pred CCCCCEEEEECCC--ccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeE
Q psy7830 132 LQNGSRVLDIGSG--QGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDV 206 (364)
Q Consensus 132 l~~g~~VLDiGcG--sG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~ 206 (364)
+.++.+||-.|+. -|..+..+++. +|++++. +...+.+++ + +...+.....+........+.+|+
T Consensus 137 ~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~v~~~~~-~~~~~~~~~-~--------g~~~~~~~~~~~~~~~~~~~~~d~ 206 (331)
T cd08273 137 VLTGQRVLIHGASGGVGQALLELALLAGAEVYGTAS-ERNHAALRE-L--------GATPIDYRTKDWLPAMLTPGGVDV 206 (331)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC-HHHHHHHHH-c--------CCeEEcCCCcchhhhhccCCCceE
Confidence 6789999999862 34455555555 7777775 655555533 2 100010000011000011246899
Q ss_pred EEEccChHHHHHHHHhccCCCcEEEEEE
Q psy7830 207 IFFGAGTTEVSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 207 Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~ 234 (364)
|+....-.. .....+.++++|+++..-
T Consensus 207 vl~~~~~~~-~~~~~~~l~~~g~~v~~g 233 (331)
T cd08273 207 VFDGVGGES-YEESYAALAPGGTLVCYG 233 (331)
T ss_pred EEECCchHH-HHHHHHHhcCCCEEEEEc
Confidence 986554444 677788999999987543
No 450
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=62.31 E-value=58 Score=29.95 Aligned_cols=90 Identities=20% Similarity=0.241 Sum_probs=55.4
Q ss_pred CCCCCEEEEECC--CccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC------CCCC
Q psy7830 132 LQNGSRVLDIGS--GQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW------GHAE 200 (364)
Q Consensus 132 l~~g~~VLDiGc--GsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~------~~~~ 200 (364)
+.+|.+||-.|+ +.|..+..+++. .|++++.+++..+.+++ + +... ++..+... ....
T Consensus 134 ~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~--------g~~~--~~~~~~~~~~~~~~~~~~ 202 (320)
T cd05286 134 VKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARA-A--------GADH--VINYRDEDFVERVREITG 202 (320)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH-C--------CCCE--EEeCCchhHHHHHHHHcC
Confidence 568899999985 245555556655 88899888887776643 1 1111 11111100 0111
Q ss_pred CCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 201 GGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 201 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
...+|+|+....- .......+.|+++|+++..
T Consensus 203 ~~~~d~vl~~~~~-~~~~~~~~~l~~~g~~v~~ 234 (320)
T cd05286 203 GRGVDVVYDGVGK-DTFEGSLDSLRPRGTLVSF 234 (320)
T ss_pred CCCeeEEEECCCc-HhHHHHHHhhccCcEEEEE
Confidence 2469999865443 4667788999999998754
No 451
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=62.27 E-value=73 Score=31.88 Aligned_cols=86 Identities=14% Similarity=0.096 Sum_probs=52.5
Q ss_pred CEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC----CCCCCee
Q psy7830 136 SRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH----AEGGPYD 205 (364)
Q Consensus 136 ~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~----~~~~~fD 205 (364)
++|+=+|| |..+..+++. .|+.+|.+++.++.+++.. .++++.+|..+.. ..-..+|
T Consensus 1 m~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~-----------~~~~~~gd~~~~~~l~~~~~~~a~ 67 (453)
T PRK09496 1 MKIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL-----------DVRTVVGNGSSPDVLREAGAEDAD 67 (453)
T ss_pred CEEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc-----------CEEEEEeCCCCHHHHHHcCCCcCC
Confidence 35777776 6666666653 8999999999877765421 5777888876421 1124688
Q ss_pred EEEEccChHH---HHHHHHhccCCCcEEEEEE
Q psy7830 206 VIFFGAGTTE---VSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 206 ~Ii~~~~~~~---l~~~l~~~LkpGG~Lvi~~ 234 (364)
.|++...-.. ......+.+.|.-.+++.+
T Consensus 68 ~vi~~~~~~~~n~~~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 68 LLIAVTDSDETNMVACQIAKSLFGAPTTIARV 99 (453)
T ss_pred EEEEecCChHHHHHHHHHHHHhcCCCeEEEEE
Confidence 8877544322 2334445554555555544
No 452
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=62.23 E-value=55 Score=31.16 Aligned_cols=88 Identities=25% Similarity=0.275 Sum_probs=51.5
Q ss_pred CCCCCEEEEECC--CccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC----CCCCCC
Q psy7830 132 LQNGSRVLDIGS--GQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW----GHAEGG 202 (364)
Q Consensus 132 l~~g~~VLDiGc--GsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~----~~~~~~ 202 (364)
+.++.+||-.|+ +.|..++.+++. ++++++.+. ..+.+++ ++. . .+...+-.. ......
T Consensus 175 ~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~---------~g~-~-~~~~~~~~~~~~~~~~~~~ 242 (350)
T cd08274 175 VGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRA---------LGA-D-TVILRDAPLLADAKALGGE 242 (350)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHh---------cCC-e-EEEeCCCccHHHHHhhCCC
Confidence 678999999997 234555555555 888877543 4444422 222 1 111111100 011234
Q ss_pred CeeEEEEccChHHHHHHHHhccCCCcEEEE
Q psy7830 203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVA 232 (364)
Q Consensus 203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 232 (364)
.+|+|+.... ........+.|+++|+++.
T Consensus 243 ~~d~vi~~~g-~~~~~~~~~~l~~~G~~v~ 271 (350)
T cd08274 243 PVDVVADVVG-GPLFPDLLRLLRPGGRYVT 271 (350)
T ss_pred CCcEEEecCC-HHHHHHHHHHhccCCEEEE
Confidence 6999986544 3466788899999999875
No 453
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=62.15 E-value=85 Score=28.20 Aligned_cols=91 Identities=12% Similarity=0.000 Sum_probs=57.0
Q ss_pred CCCEEEEECCCccHH--HHHHHcc--eEEEEeCCH--HHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830 134 NGSRVLDIGSGQGYM--ATAKEWL--SSVRQLLLP--ETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI 207 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~--a~~la~~--~V~~vDis~--~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I 207 (364)
.|.+||-+|.|.=.. +..+.+. +|+.++.+. +..+.+ .. .+++++..+..... -..+|+|
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~----~~--------~~i~~~~~~~~~~d--l~~~~lV 73 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLA----EQ--------GGITWLARCFDADI--LEGAFLV 73 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHH----Hc--------CCEEEEeCCCCHHH--hCCcEEE
Confidence 577999999886332 2333333 677665543 332221 11 36888887754322 2468999
Q ss_pred EEccChHHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830 208 FFGAGTTEVSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 208 i~~~~~~~l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
++......+-..+....+.-|.++-.+....
T Consensus 74 i~at~d~~ln~~i~~~a~~~~ilvn~~d~~e 104 (205)
T TIGR01470 74 IAATDDEELNRRVAHAARARGVPVNVVDDPE 104 (205)
T ss_pred EECCCCHHHHHHHHHHHHHcCCEEEECCCcc
Confidence 9877777777777777778888886555543
No 454
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=61.79 E-value=55 Score=27.29 Aligned_cols=70 Identities=21% Similarity=0.239 Sum_probs=43.8
Q ss_pred EEEEECCCccHHHHHHHcc-------eEEEEeCC--HHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC---------
Q psy7830 137 RVLDIGSGQGYMATAKEWL-------SSVRQLLL--PETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH--------- 198 (364)
Q Consensus 137 ~VLDiGcGsG~~a~~la~~-------~V~~vDis--~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~--------- 198 (364)
.||=.|+++| ++..+++. .|+.+..+ ....+...+.+.. .+ .++.+...|..+..
T Consensus 2 ~~lItGa~~g-iG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~-----~~-~~~~~~~~D~~~~~~~~~~~~~~ 74 (167)
T PF00106_consen 2 TVLITGASSG-IGRALARALARRGARVVILTSRSEDSEGAQELIQELKA-----PG-AKITFIECDLSDPESIRALIEEV 74 (167)
T ss_dssp EEEEETTTSH-HHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHH-----TT-SEEEEEESETTSHHHHHHHHHHH
T ss_pred EEEEECCCCH-HHHHHHHHHHhcCceEEEEeeecccccccccccccccc-----cc-ccccccccccccccccccccccc
Confidence 4677787654 44444333 77888888 5656655555554 22 58999999976421
Q ss_pred -CCCCCeeEEEEccCh
Q psy7830 199 -AEGGPYDVIFFGAGT 213 (364)
Q Consensus 199 -~~~~~fD~Ii~~~~~ 213 (364)
...++.|+++.+...
T Consensus 75 ~~~~~~ld~li~~ag~ 90 (167)
T PF00106_consen 75 IKRFGPLDILINNAGI 90 (167)
T ss_dssp HHHHSSESEEEEECSC
T ss_pred cccccccccccccccc
Confidence 113579999877543
No 455
>PRK08265 short chain dehydrogenase; Provisional
Probab=61.76 E-value=51 Score=30.16 Aligned_cols=69 Identities=14% Similarity=0.074 Sum_probs=41.9
Q ss_pred CCCEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC---------
Q psy7830 134 NGSRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH--------- 198 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~--------- 198 (364)
.+.++|-.|+++ .++..+++. +|+.++.+++.++...+.+ + .++.++.+|+.+..
T Consensus 5 ~~k~vlItGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--------~-~~~~~~~~Dl~~~~~~~~~~~~~ 74 (261)
T PRK08265 5 AGKVAIVTGGAT-LIGAAVARALVAAGARVAIVDIDADNGAAVAASL--------G-ERARFIATDITDDAAIERAVATV 74 (261)
T ss_pred CCCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------C-CeeEEEEecCCCHHHHHHHHHHH
Confidence 356888888654 444444433 8999999876555443332 1 25778888876431
Q ss_pred -CCCCCeeEEEEccC
Q psy7830 199 -AEGGPYDVIFFGAG 212 (364)
Q Consensus 199 -~~~~~fD~Ii~~~~ 212 (364)
...+..|+++.+..
T Consensus 75 ~~~~g~id~lv~~ag 89 (261)
T PRK08265 75 VARFGRVDILVNLAC 89 (261)
T ss_pred HHHhCCCCEEEECCC
Confidence 01245788887654
No 456
>PRK06940 short chain dehydrogenase; Provisional
Probab=61.67 E-value=46 Score=30.88 Aligned_cols=69 Identities=19% Similarity=0.121 Sum_probs=42.6
Q ss_pred EEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC---------CCCC
Q psy7830 137 RVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH---------AEGG 202 (364)
Q Consensus 137 ~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~---------~~~~ 202 (364)
.+|--|+ |.++..+++. +|+.++.++..++...+.+.. .+ .++.++.+|+.+.. ...+
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~-----~~-~~~~~~~~Dv~d~~~i~~~~~~~~~~g 75 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLRE-----AG-FDVSTQEVDVSSRESVKALAATAQTLG 75 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHh-----cC-CeEEEEEeecCCHHHHHHHHHHHHhcC
Confidence 4555564 4566666554 899999988776665555443 11 25777888875421 1124
Q ss_pred CeeEEEEccCh
Q psy7830 203 PYDVIFFGAGT 213 (364)
Q Consensus 203 ~fD~Ii~~~~~ 213 (364)
..|+++.+...
T Consensus 76 ~id~li~nAG~ 86 (275)
T PRK06940 76 PVTGLVHTAGV 86 (275)
T ss_pred CCCEEEECCCc
Confidence 68998877653
No 457
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=61.26 E-value=39 Score=31.82 Aligned_cols=90 Identities=19% Similarity=0.191 Sum_probs=55.0
Q ss_pred CCCCCEEEEECC--CccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEcCC----CCCCCCC
Q psy7830 132 LQNGSRVLDIGS--GQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILKDA----RWGHAEG 201 (364)
Q Consensus 132 l~~g~~VLDiGc--GsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~D~----~~~~~~~ 201 (364)
+.++.+||=.|+ +.|..+..+++. +|++++.++...+.+++.+.. .. +.....+. .... .
T Consensus 143 ~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~g~--------~~~~~~~~~~~~~~v~~~~--~ 212 (329)
T cd05288 143 PKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELGF--------DAAINYKTPDLAEALKEAA--P 212 (329)
T ss_pred CCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhcCC--------ceEEecCChhHHHHHHHhc--c
Confidence 567889998884 245555566655 889999888877776553311 11 11110011 0111 2
Q ss_pred CCeeEEEEccChHHHHHHHHhccCCCcEEEE
Q psy7830 202 GPYDVIFFGAGTTEVSKTILSQLKPNGRIVA 232 (364)
Q Consensus 202 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 232 (364)
..+|+++.... ........+.|+++|+++.
T Consensus 213 ~~~d~vi~~~g-~~~~~~~~~~l~~~G~~v~ 242 (329)
T cd05288 213 DGIDVYFDNVG-GEILDAALTLLNKGGRIAL 242 (329)
T ss_pred CCceEEEEcch-HHHHHHHHHhcCCCceEEE
Confidence 46898885443 3567778889999999774
No 458
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=61.07 E-value=43 Score=31.47 Aligned_cols=84 Identities=17% Similarity=0.175 Sum_probs=48.5
Q ss_pred EEEEECCCc--cHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccC
Q psy7830 137 RVLDIGSGQ--GYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAG 212 (364)
Q Consensus 137 ~VLDiGcGs--G~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~ 212 (364)
+|.=||+|. |.++..+.+. +|+++|.+++.++.+.+. + .+.....+. + .-...|+|+...+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~---g--------~~~~~~~~~-~---~~~~aDlVilavp 66 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIER---G--------LVDEASTDL-S---LLKDCDLVILALP 66 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC---C--------CcccccCCH-h---HhcCCCEEEEcCC
Confidence 567788775 3444555544 899999999887776542 1 111111111 1 1235799988777
Q ss_pred hHH---HHHHHHhccCCCcEEEEEEcC
Q psy7830 213 TTE---VSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 213 ~~~---l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
... +.+.+...++++ .++..++.
T Consensus 67 ~~~~~~~~~~l~~~l~~~-~ii~d~~S 92 (279)
T PRK07417 67 IGLLLPPSEQLIPALPPE-AIVTDVGS 92 (279)
T ss_pred HHHHHHHHHHHHHhCCCC-cEEEeCcc
Confidence 654 345666667665 44444433
No 459
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=60.79 E-value=36 Score=36.18 Aligned_cols=90 Identities=17% Similarity=0.141 Sum_probs=55.8
Q ss_pred CEEEEECCCc-cHHHHH-HHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC----CCCCCeeEE
Q psy7830 136 SRVLDIGSGQ-GYMATA-KEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH----AEGGPYDVI 207 (364)
Q Consensus 136 ~~VLDiGcGs-G~~a~~-la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~----~~~~~fD~I 207 (364)
.+|+=+|||. |..... +.+. .++.+|.|++.++.+++. ...++.+|+.+.. ..-+..|.+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~------------g~~v~~GDat~~~~L~~agi~~A~~v 468 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF------------GMKVFYGDATRMDLLESAGAAKAEVL 468 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc------------CCeEEEEeCCCHHHHHhcCCCcCCEE
Confidence 5788887775 333322 2222 899999999999888651 4567889987542 112467877
Q ss_pred EEccChHH---HHHHHHhccCCCcEEEEEEcCC
Q psy7830 208 FFGAGTTE---VSKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 208 i~~~~~~~---l~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
++...-.. ..-...+.+.|+-.++....+.
T Consensus 469 vv~~~d~~~n~~i~~~ar~~~p~~~iiaRa~d~ 501 (621)
T PRK03562 469 INAIDDPQTSLQLVELVKEHFPHLQIIARARDV 501 (621)
T ss_pred EEEeCCHHHHHHHHHHHHHhCCCCeEEEEECCH
Confidence 76544322 2234455567777777666554
No 460
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=60.71 E-value=88 Score=28.89 Aligned_cols=72 Identities=11% Similarity=-0.041 Sum_probs=37.9
Q ss_pred CCCEEEEECCCcc-HHHHH----HHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC--------
Q psy7830 134 NGSRVLDIGSGQG-YMATA----KEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH-------- 198 (364)
Q Consensus 134 ~g~~VLDiGcGsG-~~a~~----la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~-------- 198 (364)
.++.+|-.|+++| .++.. +++. +|+.++.+....+.+++-... ...+.++..|+.+..
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~v~~~~~~ 77 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQ-------LGSDIVLPCDVAEDASIDAMFAE 77 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhc-------cCCceEeecCCCCHHHHHHHHHH
Confidence 3667888888762 44433 3333 777777764322222222111 123456677775421
Q ss_pred --CCCCCeeEEEEccC
Q psy7830 199 --AEGGPYDVIFFGAG 212 (364)
Q Consensus 199 --~~~~~fD~Ii~~~~ 212 (364)
...+++|+++.|..
T Consensus 78 ~~~~~g~iD~linnAg 93 (262)
T PRK07984 78 LGKVWPKFDGFVHSIG 93 (262)
T ss_pred HHhhcCCCCEEEECCc
Confidence 11246788887663
No 461
>PRK06500 short chain dehydrogenase; Provisional
Probab=60.66 E-value=59 Score=29.14 Aligned_cols=69 Identities=19% Similarity=0.153 Sum_probs=40.6
Q ss_pred CCCEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC---------
Q psy7830 134 NGSRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH--------- 198 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~--------- 198 (364)
++.+||-.|++ |.++..+++. +|+.++.++..++...+.+. .++.++..|..+..
T Consensus 5 ~~k~vlItGas-g~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~~~~~~~~~ 74 (249)
T PRK06500 5 QGKTALITGGT-SGIGLETARQFLAEGARVAITGRDPASLEAARAELG---------ESALVIRADAGDVAAQKALAQAL 74 (249)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhC---------CceEEEEecCCCHHHHHHHHHHH
Confidence 35678888765 4455444433 88899988766554443321 25667777765421
Q ss_pred -CCCCCeeEEEEccC
Q psy7830 199 -AEGGPYDVIFFGAG 212 (364)
Q Consensus 199 -~~~~~fD~Ii~~~~ 212 (364)
...++.|.|+.+..
T Consensus 75 ~~~~~~id~vi~~ag 89 (249)
T PRK06500 75 AEAFGRLDAVFINAG 89 (249)
T ss_pred HHHhCCCCEEEECCC
Confidence 01246788876543
No 462
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=60.29 E-value=48 Score=31.36 Aligned_cols=90 Identities=19% Similarity=0.139 Sum_probs=53.1
Q ss_pred CCEEEEECC--CccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC-CC-CCCCCeeE
Q psy7830 135 GSRVLDIGS--GQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW-GH-AEGGPYDV 206 (364)
Q Consensus 135 g~~VLDiGc--GsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~-~~-~~~~~fD~ 206 (364)
|.+||=.|+ +.|..+..+++. +|+++..+++..+.+++ + +.+.+--...+... .. .....+|+
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~~-~--------g~~~~~~~~~~~~~~i~~~~~~~vd~ 219 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLE-L--------GAHHVIDHSKPLKAQLEKLGLEAVSY 219 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHH-c--------CCCEEEECCCCHHHHHHHhcCCCCCE
Confidence 889998885 345555556652 78888888777666643 2 21111100011100 00 11246999
Q ss_pred EEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 207 IFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 207 Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
|+....-........+.|+++|+++..
T Consensus 220 vl~~~~~~~~~~~~~~~l~~~G~~v~~ 246 (336)
T TIGR02817 220 VFSLTHTDQHFKEIVELLAPQGRFALI 246 (336)
T ss_pred EEEcCCcHHHHHHHHHHhccCCEEEEE
Confidence 985433345677888999999998854
No 463
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=60.15 E-value=19 Score=34.22 Aligned_cols=96 Identities=16% Similarity=0.084 Sum_probs=53.8
Q ss_pred CEEEEECCCcc--HHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCC------------CCCEEEEEcCCCCCCC
Q psy7830 136 SRVLDIGSGQG--YMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQ------------SKTLEFILKDARWGHA 199 (364)
Q Consensus 136 ~~VLDiGcGsG--~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~------------~~~v~~~~~D~~~~~~ 199 (364)
.+|--||+|+= .++..++.. .|+.+|.+++.++.+++++.+....... ..++++ ..|...
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~--- 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDLGD--- 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCHHH---
Confidence 36888898852 333444444 9999999999999877765431100000 012222 223211
Q ss_pred CCCCeeEEEEccCh-----HHHHHHHHhcc-CCCcEEEEEEcC
Q psy7830 200 EGGPYDVIFFGAGT-----TEVSKTILSQL-KPNGRIVAPVGN 236 (364)
Q Consensus 200 ~~~~fD~Ii~~~~~-----~~l~~~l~~~L-kpGG~Lvi~~~~ 236 (364)
-...|+|+-..+- +.++..+.+.+ +|+.+++-....
T Consensus 82 -~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~ 123 (286)
T PRK07819 82 -FADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSS 123 (286)
T ss_pred -hCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 1357888765332 23566777777 677666544433
No 464
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=60.11 E-value=73 Score=29.68 Aligned_cols=72 Identities=15% Similarity=0.022 Sum_probs=39.8
Q ss_pred CCCEEEEECCCc-cHHHHHHHc----c--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC--------
Q psy7830 134 NGSRVLDIGSGQ-GYMATAKEW----L--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH-------- 198 (364)
Q Consensus 134 ~g~~VLDiGcGs-G~~a~~la~----~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~-------- 198 (364)
.++.+|-.|+++ +.++..+++ . +|+.++.+....+.+++.... ++. . .++..|+.+..
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~-----~~~-~-~~~~~Dv~d~~~v~~~~~~ 76 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQE-----LGS-D-YVYELDVSKPEHFKSLAES 76 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHh-----cCC-c-eEEEecCCCHHHHHHHHHH
Confidence 367889899862 344444443 3 888888875432233222222 111 2 45677876431
Q ss_pred --CCCCCeeEEEEccC
Q psy7830 199 --AEGGPYDVIFFGAG 212 (364)
Q Consensus 199 --~~~~~fD~Ii~~~~ 212 (364)
...+..|+++.|..
T Consensus 77 i~~~~g~iDilVnnAG 92 (274)
T PRK08415 77 LKKDLGKIDFIVHSVA 92 (274)
T ss_pred HHHHcCCCCEEEECCc
Confidence 11256898887764
No 465
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=59.89 E-value=52 Score=31.59 Aligned_cols=91 Identities=15% Similarity=0.135 Sum_probs=49.2
Q ss_pred CCCCEEEEECCCc-cHHHHHH-Hcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc-CCCCCCCCCCCeeE
Q psy7830 133 QNGSRVLDIGSGQ-GYMATAK-EWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK-DARWGHAEGGPYDV 206 (364)
Q Consensus 133 ~~g~~VLDiGcGs-G~~a~~l-a~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~-D~~~~~~~~~~fD~ 206 (364)
.++++|+-+|+|. |...... ... .|+.++.+++......+.+ +. .+... |.... -..+|+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~--------g~---~~~~~~~~~~~---l~~aDv 241 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL--------GG---NAVPLDELLEL---LNEADV 241 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc--------CC---eEEeHHHHHHH---HhcCCE
Confidence 3689999999875 3332222 221 7889999987554333222 11 12221 21111 135799
Q ss_pred EEEccChHHH---HHHHHhccCCCcEEEEEEcCC
Q psy7830 207 IFFGAGTTEV---SKTILSQLKPNGRIVAPVGNV 237 (364)
Q Consensus 207 Ii~~~~~~~l---~~~l~~~LkpGG~Lvi~~~~~ 237 (364)
|+...+..+. ...+.+..+.+|.+++-+..+
T Consensus 242 Vi~at~~~~~~~~~~~~~~~~~~~~~~viDlavP 275 (311)
T cd05213 242 VISATGAPHYAKIVERAMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred EEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCC
Confidence 9987665543 333333333367788766543
No 466
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=59.85 E-value=34 Score=32.38 Aligned_cols=90 Identities=18% Similarity=0.142 Sum_probs=56.1
Q ss_pred CCCCCEEEEECCC--ccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeE
Q psy7830 132 LQNGSRVLDIGSG--QGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDV 206 (364)
Q Consensus 132 l~~g~~VLDiGcG--sG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~ 206 (364)
+.++.+||-.|++ .|..++.+++. +++.++.+++..+.+++. .... + +..-...+.... +.+|+
T Consensus 160 ~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~~---~---~~~~~~~~v~~~----~~~d~ 228 (334)
T PRK13771 160 VKKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVSKY-ADYV---I---VGSKFSEEVKKI----GGADI 228 (334)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHHh---c---CchhHHHHHHhc----CCCcE
Confidence 6788999999884 45666666666 888899988888777543 2110 1 011000011111 25898
Q ss_pred EEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 207 IFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 207 Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
++....- .......+.|+++|+++..
T Consensus 229 ~ld~~g~-~~~~~~~~~l~~~G~~v~~ 254 (334)
T PRK13771 229 VIETVGT-PTLEESLRSLNMGGKIIQI 254 (334)
T ss_pred EEEcCCh-HHHHHHHHHHhcCCEEEEE
Confidence 8865443 3467788889999997754
No 467
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=59.83 E-value=88 Score=28.95 Aligned_cols=92 Identities=24% Similarity=0.268 Sum_probs=48.4
Q ss_pred CCCCCEEEEECCC--ccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEcCCCCCCCCCCCee
Q psy7830 132 LQNGSRVLDIGSG--QGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILKDARWGHAEGGPYD 205 (364)
Q Consensus 132 l~~g~~VLDiGcG--sG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~D~~~~~~~~~~fD 205 (364)
+.++.+||-.|+. .|..+..+++. +|++++.+ ...+.+++ + +... +.....+..........+|
T Consensus 141 ~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-~~~~~~~~-~--------g~~~~~~~~~~~~~~~~~~~~~~d 210 (319)
T cd08267 141 VKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-RNAELVRS-L--------GADEVIDYTTEDFVALTAGGEKYD 210 (319)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-HHHHHHHH-c--------CCCEeecCCCCCcchhccCCCCCc
Confidence 5789999999972 45566666665 88888754 44444432 1 1111 0000001100011234689
Q ss_pred EEEEccCh--HHHHHHHHhccCCCcEEEEEE
Q psy7830 206 VIFFGAGT--TEVSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 206 ~Ii~~~~~--~~l~~~l~~~LkpGG~Lvi~~ 234 (364)
+|+....- ......+ ..++++|+++..-
T Consensus 211 ~vi~~~~~~~~~~~~~~-~~l~~~g~~i~~g 240 (319)
T cd08267 211 VIFDAVGNSPFSLYRAS-LALKPGGRYVSVG 240 (319)
T ss_pred EEEECCCchHHHHHHhh-hccCCCCEEEEec
Confidence 99875442 1222222 2399999988643
No 468
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=59.51 E-value=46 Score=34.72 Aligned_cols=87 Identities=11% Similarity=0.045 Sum_probs=52.6
Q ss_pred CEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC----CCCCCee
Q psy7830 136 SRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH----AEGGPYD 205 (364)
Q Consensus 136 ~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~----~~~~~fD 205 (364)
.+|+=+|||. .+..+++. .|+.+|.|++.++.+++ ....++.+|+.+.. ..-+++|
T Consensus 418 ~hiiI~G~G~--~G~~la~~L~~~g~~vvvId~d~~~~~~~~~------------~g~~~i~GD~~~~~~L~~a~i~~a~ 483 (558)
T PRK10669 418 NHALLVGYGR--VGSLLGEKLLAAGIPLVVIETSRTRVDELRE------------RGIRAVLGNAANEEIMQLAHLDCAR 483 (558)
T ss_pred CCEEEECCCh--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH------------CCCeEEEcCCCCHHHHHhcCccccC
Confidence 4566666654 44444443 89999999998888764 15678999987532 1124688
Q ss_pred EEEEccCh--HH-HHHHHHhccCCCcEEEEEEcC
Q psy7830 206 VIFFGAGT--TE-VSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 206 ~Ii~~~~~--~~-l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
.+++...- .. ..-...+...|+-.++..+.+
T Consensus 484 ~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~~~ 517 (558)
T PRK10669 484 WLLLTIPNGYEAGEIVASAREKRPDIEIIARAHY 517 (558)
T ss_pred EEEEEcCChHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 66653222 21 122233455677777766644
No 469
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=58.91 E-value=1.5e+02 Score=27.67 Aligned_cols=90 Identities=12% Similarity=0.091 Sum_probs=55.1
Q ss_pred CCCCCEEEEECC--CccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE--cC-CCC-C--CCC
Q psy7830 132 LQNGSRVLDIGS--GQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL--KD-ARW-G--HAE 200 (364)
Q Consensus 132 l~~g~~VLDiGc--GsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~--~D-~~~-~--~~~ 200 (364)
+.++.+||=.|+ +.|..++.+++. .++.+..+++..+.+++ + +. ...+.. .| ... . ...
T Consensus 138 ~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~--------g~-~~~~~~~~~~~~~~~~~~~~~ 207 (334)
T PTZ00354 138 VKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKK-L--------AA-IILIRYPDEEGFAPKVKKLTG 207 (334)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-c--------CC-cEEEecCChhHHHHHHHHHhC
Confidence 578899998885 345666666665 66778888887777743 2 11 111111 11 100 0 011
Q ss_pred CCCeeEEEEccChHHHHHHHHhccCCCcEEEE
Q psy7830 201 GGPYDVIFFGAGTTEVSKTILSQLKPNGRIVA 232 (364)
Q Consensus 201 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 232 (364)
...+|+++.... ........+.|+++|+++.
T Consensus 208 ~~~~d~~i~~~~-~~~~~~~~~~l~~~g~~i~ 238 (334)
T PTZ00354 208 EKGVNLVLDCVG-GSYLSETAEVLAVDGKWIV 238 (334)
T ss_pred CCCceEEEECCc-hHHHHHHHHHhccCCeEEE
Confidence 246899986543 4566778899999999885
No 470
>PRK07774 short chain dehydrogenase; Provisional
Probab=58.81 E-value=51 Score=29.64 Aligned_cols=72 Identities=18% Similarity=0.059 Sum_probs=45.9
Q ss_pred CCCEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC--------
Q psy7830 134 NGSRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA-------- 199 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~-------- 199 (364)
.+.++|=.| |+|.++..+++. +|+.++.++...+...+.+... ..++.++..|..+...
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD------GGTAIAVQVDVSDPDSAKAMADAT 77 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHHHHHHHH
Confidence 467788887 556666666654 8999999877665555544331 1256777888764321
Q ss_pred --CCCCeeEEEEccC
Q psy7830 200 --EGGPYDVIFFGAG 212 (364)
Q Consensus 200 --~~~~fD~Ii~~~~ 212 (364)
..+..|+|+.+..
T Consensus 78 ~~~~~~id~vi~~ag 92 (250)
T PRK07774 78 VSAFGGIDYLVNNAA 92 (250)
T ss_pred HHHhCCCCEEEECCC
Confidence 1135799987654
No 471
>PRK07109 short chain dehydrogenase; Provisional
Probab=58.48 E-value=93 Score=29.97 Aligned_cols=72 Identities=19% Similarity=0.098 Sum_probs=46.6
Q ss_pred CCCEEEEECCCccHHHHHHHc----c--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC---------
Q psy7830 134 NGSRVLDIGSGQGYMATAKEW----L--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH--------- 198 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~----~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~--------- 198 (364)
.+..||-.|+++| ++..+++ . +|+.++.+++.++...+.+.. .+ .++.++.+|+.+..
T Consensus 7 ~~k~vlITGas~g-IG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~-----~g-~~~~~v~~Dv~d~~~v~~~~~~~ 79 (334)
T PRK07109 7 GRQVVVITGASAG-VGRATARAFARRGAKVVLLARGEEGLEALAAEIRA-----AG-GEALAVVADVADAEAVQAAADRA 79 (334)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH-----cC-CcEEEEEecCCCHHHHHHHHHHH
Confidence 4567888886544 4444433 3 899999998887777666654 11 36778888876421
Q ss_pred -CCCCCeeEEEEccC
Q psy7830 199 -AEGGPYDVIFFGAG 212 (364)
Q Consensus 199 -~~~~~fD~Ii~~~~ 212 (364)
...++.|+++.|..
T Consensus 80 ~~~~g~iD~lInnAg 94 (334)
T PRK07109 80 EEELGPIDTWVNNAM 94 (334)
T ss_pred HHHCCCCCEEEECCC
Confidence 01246899887654
No 472
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=58.39 E-value=2.1 Score=37.20 Aligned_cols=40 Identities=23% Similarity=0.109 Sum_probs=28.1
Q ss_pred CCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHH
Q psy7830 134 NGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKN 173 (364)
Q Consensus 134 ~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~ 173 (364)
+..+|+=+|.|. |.-+..++.. +|+..|..+..++..+..
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~ 62 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESL 62 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHT
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcc
Confidence 347899999886 4445555554 999999998887776554
No 473
>PRK08251 short chain dehydrogenase; Provisional
Probab=58.27 E-value=57 Score=29.33 Aligned_cols=73 Identities=12% Similarity=0.064 Sum_probs=46.9
Q ss_pred CCEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC----------
Q psy7830 135 GSRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH---------- 198 (364)
Q Consensus 135 g~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~---------- 198 (364)
+.++|-.|+ +|.++..+++. +|+.++.++..++.....+.... ...++.++.+|..+..
T Consensus 2 ~k~vlItGa-s~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~ 76 (248)
T PRK08251 2 RQKILITGA-SSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARY----PGIKVAVAALDVNDHDQVFEVFAEFR 76 (248)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC----CCceEEEEEcCCCCHHHHHHHHHHHH
Confidence 356887885 56666665544 89999999888776665554311 1136888888987531
Q ss_pred CCCCCeeEEEEccC
Q psy7830 199 AEGGPYDVIFFGAG 212 (364)
Q Consensus 199 ~~~~~fD~Ii~~~~ 212 (364)
...+..|.|+.+..
T Consensus 77 ~~~~~id~vi~~ag 90 (248)
T PRK08251 77 DELGGLDRVIVNAG 90 (248)
T ss_pred HHcCCCCEEEECCC
Confidence 11245788887754
No 474
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=57.94 E-value=92 Score=28.87 Aligned_cols=72 Identities=14% Similarity=-0.037 Sum_probs=38.2
Q ss_pred CCCEEEEECCC-ccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC--------
Q psy7830 134 NGSRVLDIGSG-QGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH-------- 198 (364)
Q Consensus 134 ~g~~VLDiGcG-sG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~-------- 198 (364)
.+..+|-.|++ ++.++..+++. +|+.+..++...+.+++.... + ....++..|+.+..
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~-----~--~~~~~~~~Dl~~~~~v~~~~~~ 81 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAE-----L--GAFVAGHCDVTDEASIDAVFET 81 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHh-----c--CCceEEecCCCCHHHHHHHHHH
Confidence 45678888886 35555555544 777766553333333332222 1 13445677765321
Q ss_pred --CCCCCeeEEEEccC
Q psy7830 199 --AEGGPYDVIFFGAG 212 (364)
Q Consensus 199 --~~~~~fD~Ii~~~~ 212 (364)
...+..|+++.|..
T Consensus 82 ~~~~~g~iD~lv~nAG 97 (272)
T PRK08159 82 LEKKWGKLDFVVHAIG 97 (272)
T ss_pred HHHhcCCCcEEEECCc
Confidence 11246788887753
No 475
>PRK12744 short chain dehydrogenase; Provisional
Probab=57.74 E-value=72 Score=28.97 Aligned_cols=72 Identities=15% Similarity=0.062 Sum_probs=38.4
Q ss_pred CCCEEEEECCCccHHHHHHHcc------eEEEEeCC----HHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC-----
Q psy7830 134 NGSRVLDIGSGQGYMATAKEWL------SSVRQLLL----PETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH----- 198 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~~------~V~~vDis----~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~----- 198 (364)
.+.+||-.|++ |.++..+++. +|+.++.+ .+..+...+.+.. .+ .++.++..|+.+..
T Consensus 7 ~~k~vlItGa~-~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~-----~~-~~~~~~~~D~~~~~~~~~~ 79 (257)
T PRK12744 7 KGKVVLIAGGA-KNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKA-----AG-AKAVAFQADLTTAAAVEKL 79 (257)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHH-----hC-CcEEEEecCcCCHHHHHHH
Confidence 46688888865 4455555543 65666532 2333333333322 11 36778888876421
Q ss_pred -----CCCCCeeEEEEccC
Q psy7830 199 -----AEGGPYDVIFFGAG 212 (364)
Q Consensus 199 -----~~~~~fD~Ii~~~~ 212 (364)
...+..|.++.+..
T Consensus 80 ~~~~~~~~~~id~li~~ag 98 (257)
T PRK12744 80 FDDAKAAFGRPDIAINTVG 98 (257)
T ss_pred HHHHHHhhCCCCEEEECCc
Confidence 01246788887654
No 476
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=57.66 E-value=20 Score=32.25 Aligned_cols=81 Identities=16% Similarity=0.065 Sum_probs=55.5
Q ss_pred CCCCEEEEECCC-ccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830 133 QNGSRVLDIGSG-QGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF 209 (364)
Q Consensus 133 ~~g~~VLDiGcG-sG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~ 209 (364)
..+.+||-+|.= +|..+..+... +|+.+|+.|.+-... .++++|..+ . .+..+.+|+|+-
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~~~~vtv~Di~p~~r~~l-------------p~~v~Fr~~--~--~~~~G~~DlivD 105 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSKADKVTVVDIHPFMRGFL-------------PNNVKFRNL--L--KFIRGEVDLIVD 105 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhcccceEEEecCCHHHHhcC-------------CCCccHhhh--c--CCCCCceeEEEe
Confidence 567889999874 57666665544 999999999873322 135665544 1 223478999997
Q ss_pred ccChHHHHHHHHhccCCCcEE
Q psy7830 210 GAGTTEVSKTILSQLKPNGRI 230 (364)
Q Consensus 210 ~~~~~~l~~~l~~~LkpGG~L 230 (364)
...+..+-++..+.+.|+-.+
T Consensus 106 lTGlGG~~Pe~L~~fnp~vfi 126 (254)
T COG4017 106 LTGLGGIEPEFLAKFNPKVFI 126 (254)
T ss_pred ccccCCCCHHHHhccCCceEE
Confidence 777777777777888887433
No 477
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=57.24 E-value=51 Score=29.43 Aligned_cols=94 Identities=15% Similarity=0.027 Sum_probs=47.1
Q ss_pred CCEEEEECCCccHHHHHHHcc-------eEEEEeCCHH-------------------HHHHHHHHHHh-cCCCCCCCCCE
Q psy7830 135 GSRVLDIGSGQGYMATAKEWL-------SSVRQLLLPE-------------------TLNNSLKNIKI-SRPDLLQSKTL 187 (364)
Q Consensus 135 g~~VLDiGcGsG~~a~~la~~-------~V~~vDis~~-------------------~l~~a~~~~~~-~~~~~l~~~~v 187 (364)
..+||=+|||. ++..+++. +++.+|.+.- ..+.+++++++ |. .-++
T Consensus 21 ~s~VlIiG~gg--lG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp-----~v~i 93 (197)
T cd01492 21 SARILLIGLKG--LGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNP-----RVKV 93 (197)
T ss_pred hCcEEEEcCCH--HHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCC-----CCEE
Confidence 56899999885 43333332 7888886521 24445556665 21 1134
Q ss_pred EEEEcCCCCCCCC-CCCeeEEEEccChHHHHHHHHhccCCCcEEEEEEc
Q psy7830 188 EFILKDARWGHAE-GGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVG 235 (364)
Q Consensus 188 ~~~~~D~~~~~~~-~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~~ 235 (364)
+...........+ -..||+|+....-......+-+..+.-|+=++..+
T Consensus 94 ~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~ 142 (197)
T cd01492 94 SVDTDDISEKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATG 142 (197)
T ss_pred EEEecCccccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 4443333221111 24799999765443333333444443443334333
No 478
>PRK07102 short chain dehydrogenase; Provisional
Probab=57.09 E-value=47 Score=29.85 Aligned_cols=70 Identities=13% Similarity=0.036 Sum_probs=43.9
Q ss_pred CEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC------C-CC
Q psy7830 136 SRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA------E-GG 202 (364)
Q Consensus 136 ~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~------~-~~ 202 (364)
++|+-.|+ +|.++..+++. +|++++.++...+...+.+.. .+..++.++.+|..+... . ..
T Consensus 2 ~~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 75 (243)
T PRK07102 2 KKILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRA-----RGAVAVSTHELDILDTASHAAFLDSLPA 75 (243)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHH-----hcCCeEEEEecCCCChHHHHHHHHHHhh
Confidence 46887885 45565555444 899999998776655544433 112478899999865321 0 12
Q ss_pred CeeEEEEcc
Q psy7830 203 PYDVIFFGA 211 (364)
Q Consensus 203 ~fD~Ii~~~ 211 (364)
.+|.++.+.
T Consensus 76 ~~d~vv~~a 84 (243)
T PRK07102 76 LPDIVLIAV 84 (243)
T ss_pred cCCEEEECC
Confidence 468888654
No 479
>KOG1197|consensus
Probab=56.86 E-value=70 Score=30.30 Aligned_cols=93 Identities=18% Similarity=0.232 Sum_probs=57.0
Q ss_pred cCCCCCEEEEEC--CCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC---CCCCC
Q psy7830 131 HLQNGSRVLDIG--SGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG---HAEGG 202 (364)
Q Consensus 131 ~l~~g~~VLDiG--cGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~---~~~~~ 202 (364)
++++|+.||--. .|-|.+...+++. ++++.--+.+..+.|++|=.. .-|.+..-|..+. .....
T Consensus 143 ~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~akenG~~--------h~I~y~~eD~v~~V~kiTngK 214 (336)
T KOG1197|consen 143 NVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKENGAE--------HPIDYSTEDYVDEVKKITNGK 214 (336)
T ss_pred CCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhcCCc--------ceeeccchhHHHHHHhccCCC
Confidence 478999988543 3445566666665 788887787888888776322 1244444453321 11134
Q ss_pred CeeEEEEccChHHHHHHHHhccCCCcEEEE
Q psy7830 203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVA 232 (364)
Q Consensus 203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 232 (364)
..|+++-...-. -+..-...||++|.+|-
T Consensus 215 GVd~vyDsvG~d-t~~~sl~~Lk~~G~mVS 243 (336)
T KOG1197|consen 215 GVDAVYDSVGKD-TFAKSLAALKPMGKMVS 243 (336)
T ss_pred Cceeeeccccch-hhHHHHHHhccCceEEE
Confidence 578777443333 34556678999999873
No 480
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=56.83 E-value=47 Score=31.73 Aligned_cols=94 Identities=14% Similarity=0.127 Sum_probs=48.5
Q ss_pred CCCEEEEECCCc--cHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHh-cCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830 134 NGSRVLDIGSGQ--GYMATAKEWL--SSVRQLLLPETLNNSLKNIKI-SRPDLLQSKTLEFILKDARWGHAEGGPYDVIF 208 (364)
Q Consensus 134 ~g~~VLDiGcGs--G~~a~~la~~--~V~~vDis~~~l~~a~~~~~~-~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii 208 (364)
..++|+=+|+|. |+++..|++. .|+.+..++. +..+++--. .. . ..+..+....+.........||+|+
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~---~-~~~~~~~~~~~~~~~~~~~~~D~vi 77 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDS---V-HGDFHLPPVQAYRSAEDMPPCDWVL 77 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEe---C-CCCeeecCceEEcchhhcCCCCEEE
Confidence 346899999885 4455566655 7777777652 222221100 00 0 0111111001111111235789987
Q ss_pred EccC---hHHHHHHHHhccCCCcEEEEE
Q psy7830 209 FGAG---TTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 209 ~~~~---~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
.... ...+.+.+...+++++.++..
T Consensus 78 lavK~~~~~~~~~~l~~~~~~~~~iv~l 105 (313)
T PRK06249 78 VGLKTTANALLAPLIPQVAAPDAKVLLL 105 (313)
T ss_pred EEecCCChHhHHHHHhhhcCCCCEEEEe
Confidence 6533 345667788888899876543
No 481
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=56.76 E-value=93 Score=29.03 Aligned_cols=92 Identities=21% Similarity=0.212 Sum_probs=55.6
Q ss_pred CCCCCEEEEECC--CccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc--CCC-CC--CCCC
Q psy7830 132 LQNGSRVLDIGS--GQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK--DAR-WG--HAEG 201 (364)
Q Consensus 132 l~~g~~VLDiGc--GsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~--D~~-~~--~~~~ 201 (364)
++++.+||=.|+ +.|..+..+++. +|++++.+++..+.+++ + +... .+... +.. .. ....
T Consensus 140 ~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~~~-~--------g~~~-~~~~~~~~~~~~~~~~~~~ 209 (324)
T cd08244 140 LTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVRA-L--------GADV-AVDYTRPDWPDQVREALGG 209 (324)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-c--------CCCE-EEecCCccHHHHHHHHcCC
Confidence 578889998885 345555556655 89999988887766643 2 1111 11111 100 00 1112
Q ss_pred CCeeEEEEccChHHHHHHHHhccCCCcEEEEEE
Q psy7830 202 GPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 202 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~ 234 (364)
..+|+|+....-. ......+.|+++|+++...
T Consensus 210 ~~~d~vl~~~g~~-~~~~~~~~l~~~g~~v~~g 241 (324)
T cd08244 210 GGVTVVLDGVGGA-IGRAALALLAPGGRFLTYG 241 (324)
T ss_pred CCceEEEECCChH-hHHHHHHHhccCcEEEEEe
Confidence 4599998655444 3477889999999988643
No 482
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=56.10 E-value=1.1e+02 Score=28.49 Aligned_cols=92 Identities=17% Similarity=0.138 Sum_probs=53.1
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEE-cCCCC---CCCCCC
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFIL-KDARW---GHAEGG 202 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~-~D~~~---~~~~~~ 202 (364)
+++|.+|+=.|+|. |..+..+++. +|+.++.+++..+.+++. . ...+ .... .+... ......
T Consensus 158 ~~~g~~vli~g~g~~g~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~-g--------~~~~~~~~~~~~~~~~~~~~~~~~ 228 (336)
T cd08276 158 LKPGDTVLVQGTGGVSLFALQFAKAAGARVIATSSSDEKLERAKAL-G--------ADHVINYRTTPDWGEEVLKLTGGR 228 (336)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc-C--------CCEEEcCCcccCHHHHHHHHcCCC
Confidence 57888888776542 3333444444 889999888877776542 1 1111 1000 01000 011124
Q ss_pred CeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
.+|+++.... ........+.|+++|+++..
T Consensus 229 ~~d~~i~~~~-~~~~~~~~~~l~~~G~~v~~ 258 (336)
T cd08276 229 GVDHVVEVGG-PGTLAQSIKAVAPGGVISLI 258 (336)
T ss_pred CCcEEEECCC-hHHHHHHHHhhcCCCEEEEE
Confidence 6899986544 45567788999999998753
No 483
>KOG0022|consensus
Probab=55.89 E-value=22 Score=34.48 Aligned_cols=90 Identities=21% Similarity=0.192 Sum_probs=59.1
Q ss_pred CCCCCEEEEECCCccHHHHHH-Hcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc-CCCC----CC--C
Q psy7830 132 LQNGSRVLDIGSGQGYMATAK-EWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK-DARW----GH--A 199 (364)
Q Consensus 132 l~~g~~VLDiGcGsG~~a~~l-a~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~-D~~~----~~--~ 199 (364)
+++|++|.-+|+|.=.++... ++. +++|+|++++..+.|++-=. -+++.. |... .. .
T Consensus 190 v~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGa-----------Te~iNp~d~~~~i~evi~Em 258 (375)
T KOG0022|consen 190 VEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGA-----------TEFINPKDLKKPIQEVIIEM 258 (375)
T ss_pred cCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCc-----------ceecChhhccccHHHHHHHH
Confidence 789999999999975555443 333 99999999999999886311 112211 2111 00 1
Q ss_pred CCCCeeEEEEccChHHHHHHHHhccCCC-cEEEE
Q psy7830 200 EGGPYDVIFFGAGTTEVSKTILSQLKPN-GRIVA 232 (364)
Q Consensus 200 ~~~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi 232 (364)
.++.+|.-+-...-.+.+.+.....+.| |.-++
T Consensus 259 TdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~ 292 (375)
T KOG0022|consen 259 TDGGVDYSFECIGNVSTMRAALESCHKGWGKSVV 292 (375)
T ss_pred hcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEE
Confidence 2467888775555566777777778887 76554
No 484
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=55.56 E-value=56 Score=30.68 Aligned_cols=90 Identities=16% Similarity=0.074 Sum_probs=53.1
Q ss_pred CCCEEEEECCC--ccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC--CCCC-CCCCCee
Q psy7830 134 NGSRVLDIGSG--QGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA--RWGH-AEGGPYD 205 (364)
Q Consensus 134 ~g~~VLDiGcG--sG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~--~~~~-~~~~~fD 205 (364)
.+.+||=.|+. .|..+..+++. +|++++.+++..+.+++ + +...+ +...+. .... .....+|
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~--------g~~~v-~~~~~~~~~~~~~~~~~~~d 215 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKK-L--------GAKEV-IPREELQEESIKPLEKQRWA 215 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHH-c--------CCCEE-EcchhHHHHHHHhhccCCcC
Confidence 46799999872 24444555555 88999998887776643 2 11111 100110 0000 0124589
Q ss_pred EEEEccChHHHHHHHHhccCCCcEEEEEE
Q psy7830 206 VIFFGAGTTEVSKTILSQLKPNGRIVAPV 234 (364)
Q Consensus 206 ~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~ 234 (364)
+|+-.... .......+.|+++|+++..-
T Consensus 216 ~vld~~g~-~~~~~~~~~l~~~G~~i~~g 243 (326)
T cd08289 216 GAVDPVGG-KTLAYLLSTLQYGGSVAVSG 243 (326)
T ss_pred EEEECCcH-HHHHHHHHHhhcCCEEEEEe
Confidence 98855443 56677889999999987643
No 485
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=55.35 E-value=90 Score=29.37 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=24.6
Q ss_pred CCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830 202 GPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP 233 (364)
Q Consensus 202 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 233 (364)
..+|+++-............+.|+++|+++..
T Consensus 232 ~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~ 263 (306)
T cd08258 232 DGADVVIECSGAVPALEQALELLRKGGRIVQV 263 (306)
T ss_pred CCCCEEEECCCChHHHHHHHHHhhcCCEEEEE
Confidence 46899987654456677788899999998853
No 486
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=55.14 E-value=60 Score=31.30 Aligned_cols=98 Identities=14% Similarity=0.139 Sum_probs=54.0
Q ss_pred CCCCEEEEECCCc-cHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeE
Q psy7830 133 QNGSRVLDIGSGQ-GYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDV 206 (364)
Q Consensus 133 ~~g~~VLDiGcGs-G~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~ 206 (364)
+.+.+|.-+|+|. |.....++.. +++-+|++++.++.-..-+.... .+. .++.+..+|..+ ....|+
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~--~~~-~~~~i~~~~~~~----~~~adi 76 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAV--PFT-SPTKIYAGDYSD----CKDADL 76 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhc--ccc-CCeEEEeCCHHH----hCCCCE
Confidence 5678999999976 5444333322 78999998876554444333310 011 245555444322 245788
Q ss_pred EEEccChHH---------------HHHHHHhcc---CCCcEEEEEEcCC
Q psy7830 207 IFFGAGTTE---------------VSKTILSQL---KPNGRIVAPVGNV 237 (364)
Q Consensus 207 Ii~~~~~~~---------------l~~~l~~~L---kpGG~Lvi~~~~~ 237 (364)
|+....... +.+++...+ .|+|.+++...+.
T Consensus 77 vIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~ 125 (315)
T PRK00066 77 VVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPV 125 (315)
T ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcH
Confidence 887554411 233433333 4788877766443
No 487
>PRK06701 short chain dehydrogenase; Provisional
Probab=55.13 E-value=58 Score=30.56 Aligned_cols=71 Identities=17% Similarity=0.059 Sum_probs=39.7
Q ss_pred CCCEEEEECCCccHHHHHHHc----c--eEEEEeCCHH-HHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC-------
Q psy7830 134 NGSRVLDIGSGQGYMATAKEW----L--SSVRQLLLPE-TLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA------- 199 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~----~--~V~~vDis~~-~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~------- 199 (364)
.++++|-.|++. .++..+++ . +|+.++.++. ..+...+.+.. .+ .++.++.+|+.+...
T Consensus 45 ~~k~iLItGasg-gIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~-----~~-~~~~~~~~Dl~~~~~~~~~~~~ 117 (290)
T PRK06701 45 KGKVALITGGDS-GIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEK-----EG-VKCLLIPGDVSDEAFCKDAVEE 117 (290)
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHh-----cC-CeEEEEEccCCCHHHHHHHHHH
Confidence 467889888654 44444443 3 8888877642 23333333332 11 367788888764210
Q ss_pred ---CCCCeeEEEEcc
Q psy7830 200 ---EGGPYDVIFFGA 211 (364)
Q Consensus 200 ---~~~~fD~Ii~~~ 211 (364)
..+..|+|+.+.
T Consensus 118 i~~~~~~iD~lI~~A 132 (290)
T PRK06701 118 TVRELGRLDILVNNA 132 (290)
T ss_pred HHHHcCCCCEEEECC
Confidence 013578887654
No 488
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=54.83 E-value=15 Score=32.08 Aligned_cols=80 Identities=18% Similarity=0.139 Sum_probs=49.1
Q ss_pred CCCEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830 134 NGSRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI 207 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I 207 (364)
.|.+|.=+|+|. .+..++++ +|+++|.+........ . ..+. ..+..+.. ...|+|
T Consensus 35 ~g~tvgIiG~G~--IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~----~--------~~~~--~~~l~ell---~~aDiv 95 (178)
T PF02826_consen 35 RGKTVGIIGYGR--IGRAVARRLKAFGMRVIGYDRSPKPEEGAD----E--------FGVE--YVSLDELL---AQADIV 95 (178)
T ss_dssp TTSEEEEESTSH--HHHHHHHHHHHTT-EEEEEESSCHHHHHHH----H--------TTEE--ESSHHHHH---HH-SEE
T ss_pred CCCEEEEEEEcC--CcCeEeeeeecCCceeEEecccCChhhhcc----c--------ccce--eeehhhhc---chhhhh
Confidence 588999998864 44444443 9999999987655111 1 1222 22332222 357999
Q ss_pred EEccChH----H-HHHHHHhccCCCcEEEE
Q psy7830 208 FFGAGTT----E-VSKTILSQLKPNGRIVA 232 (364)
Q Consensus 208 i~~~~~~----~-l~~~l~~~LkpGG~Lvi 232 (364)
+...+.. + +-.+..+.+|+|.+||=
T Consensus 96 ~~~~plt~~T~~li~~~~l~~mk~ga~lvN 125 (178)
T PF02826_consen 96 SLHLPLTPETRGLINAEFLAKMKPGAVLVN 125 (178)
T ss_dssp EE-SSSSTTTTTSBSHHHHHTSTTTEEEEE
T ss_pred hhhhccccccceeeeeeeeeccccceEEEe
Confidence 8887753 2 44778899998886663
No 489
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=54.54 E-value=53 Score=31.18 Aligned_cols=82 Identities=18% Similarity=0.133 Sum_probs=46.6
Q ss_pred CEEEEECCCc--cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE-cCCCCCCCCCCCeeEEE
Q psy7830 136 SRVLDIGSGQ--GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL-KDARWGHAEGGPYDVIF 208 (364)
Q Consensus 136 ~~VLDiGcGs--G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~-~D~~~~~~~~~~fD~Ii 208 (364)
++|+=+|.|- |.++..+... .+++.|.+...++.+.+. .+.... .+.. .......|+|+
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l------------gv~d~~~~~~~--~~~~~~aD~Vi 69 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL------------GVIDELTVAGL--AEAAAEADLVI 69 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc------------Ccccccccchh--hhhcccCCEEE
Confidence 5688888764 3344444444 678888887766665431 111111 1110 11124579999
Q ss_pred EccChHH---HHHHHHhccCCCcEEE
Q psy7830 209 FGAGTTE---VSKTILSQLKPNGRIV 231 (364)
Q Consensus 209 ~~~~~~~---l~~~l~~~LkpGG~Lv 231 (364)
...+... +++++...|++|..+.
T Consensus 70 vavPi~~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 70 VAVPIEATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred EeccHHHHHHHHHHhcccCCCCCEEE
Confidence 8888765 4566666677775543
No 490
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=54.31 E-value=31 Score=33.64 Aligned_cols=92 Identities=24% Similarity=0.232 Sum_probs=52.6
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC-CC-CCCCCe
Q psy7830 132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW-GH-AEGGPY 204 (364)
Q Consensus 132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~-~~-~~~~~f 204 (364)
+.+|.+||-.|+|. |..+..+++. +|+++|.+++..+.+++ ++..-+.....+... .. .....+
T Consensus 174 ~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~---------~g~~~v~~~~~~~~~~i~~~~~~~~ 244 (375)
T cd08282 174 VQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAES---------IGAIPIDFSDGDPVEQILGLEPGGV 244 (375)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH---------cCCeEeccCcccHHHHHHHhhCCCC
Confidence 57889998887763 4455555554 58889999887776654 111001000001000 00 011358
Q ss_pred eEEEEccChH-----------HHHHHHHhccCCCcEEEE
Q psy7830 205 DVIFFGAGTT-----------EVSKTILSQLKPNGRIVA 232 (364)
Q Consensus 205 D~Ii~~~~~~-----------~l~~~l~~~LkpGG~Lvi 232 (364)
|+|+-..... ..+....+.|+++|+++.
T Consensus 245 d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 283 (375)
T cd08282 245 DRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGI 283 (375)
T ss_pred CEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEE
Confidence 9888643322 136677889999999854
No 491
>PRK07326 short chain dehydrogenase; Provisional
Probab=54.22 E-value=55 Score=29.15 Aligned_cols=70 Identities=16% Similarity=0.047 Sum_probs=44.9
Q ss_pred CCCEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC--------
Q psy7830 134 NGSRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA-------- 199 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~-------- 199 (364)
.+..||-.|+ +|.++..+++. +|++++.++...+...+.+.. ..++.++.+|+.+...
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~-------~~~~~~~~~D~~~~~~~~~~~~~~ 76 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNN-------KGNVLGLAADVRDEADVQRAVDAI 76 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhc-------cCcEEEEEccCCCHHHHHHHHHHH
Confidence 4678898884 66666666544 899999988766665554432 1367788888754210
Q ss_pred --CCCCeeEEEEcc
Q psy7830 200 --EGGPYDVIFFGA 211 (364)
Q Consensus 200 --~~~~fD~Ii~~~ 211 (364)
..+.+|.|+.+.
T Consensus 77 ~~~~~~~d~vi~~a 90 (237)
T PRK07326 77 VAAFGGLDVLIANA 90 (237)
T ss_pred HHHcCCCCEEEECC
Confidence 113678887653
No 492
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=54.22 E-value=34 Score=29.65 Aligned_cols=99 Identities=15% Similarity=0.091 Sum_probs=49.0
Q ss_pred HHHHHHHhccCCCCCEEEEECCCccHHHH-HHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830 122 ARCLEQLVDHLQNGSRVLDIGSGQGYMAT-AKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW 196 (364)
Q Consensus 122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~-~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~ 196 (364)
..+.+.|......|.+|.=+|+|+...+. ..... -.+.+|.+|...- . .+....+.++..+...
T Consensus 55 ~~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~K~G-------~----~~PGt~ipI~~p~~l~ 123 (160)
T PF08484_consen 55 AELREFLEKLKAEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPLKQG-------K----YLPGTHIPIVSPEELK 123 (160)
T ss_dssp HHHHHHHHHHHHTT--EEEE---SHHHHHHHHHT--TTTS--EEES-GGGTT-------E----E-TTT--EEEEGGG--
T ss_pred HHHHHHHHHHHHcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChhhcC-------c----ccCCCCCeECCHHHHh
Confidence 44444444333578899999999877763 33333 3467898765311 1 0112357777666432
Q ss_pred CCCCCCCeeEEEEc--cChHHHHHHHHhccCCCcEEEEEEc
Q psy7830 197 GHAEGGPYDVIFFG--AGTTEVSKTILSQLKPNGRIVAPVG 235 (364)
Q Consensus 197 ~~~~~~~fD~Ii~~--~~~~~l~~~l~~~LkpGG~Lvi~~~ 235 (364)
....|.|+.. .-.+.+.+.+.+.++.||.++++++
T Consensus 124 ----~~~pd~vivlaw~y~~EI~~~~~~~~~~gg~fi~plP 160 (160)
T PF08484_consen 124 ----ERKPDYVIVLAWNYKDEIIEKLREYLERGGKFIVPLP 160 (160)
T ss_dssp ----SS--SEEEES-GGGHHHHHHHTHHHHHTT-EEEE-SS
T ss_pred ----hCCCCEEEEcChhhHHHHHHHHHHHHhcCCEEEEeCC
Confidence 2345766553 3335678888888999999998763
No 493
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=54.11 E-value=1.9e+02 Score=27.02 Aligned_cols=99 Identities=14% Similarity=0.091 Sum_probs=58.6
Q ss_pred CEEEEECCCccHHHHHHHcc-eEEEEeCC-HHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC---CCCee-----
Q psy7830 136 SRVLDIGSGQGYMATAKEWL-SSVRQLLL-PETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE---GGPYD----- 205 (364)
Q Consensus 136 ~~VLDiGcGsG~~a~~la~~-~V~~vDis-~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~---~~~fD----- 205 (364)
..|+.+|||-=.-...+... .+.-+|+| |++++.-++.+.+... ....+.+++..|+...+.. ...||
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~--~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~pt 160 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGA--EPPAHRRAVPVDLRQDWPAALAAAGFDPTAPT 160 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCC--CCCCceEEeccCchhhHHHHHHhCCCCCCCCe
Confidence 47999999987666665433 45666766 4455555555554110 1235788888887632211 11222
Q ss_pred EEEEccCh--------HHHHHHHHhccCCCcEEEEEEcC
Q psy7830 206 VIFFGAGT--------TEVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 206 ~Ii~~~~~--------~~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
++++-+.+ ..++..+.+...||+.|++....
T Consensus 161 l~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 161 AWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred eeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 44444443 23667777777799999987654
No 494
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=54.02 E-value=1.1e+02 Score=28.00 Aligned_cols=72 Identities=10% Similarity=-0.016 Sum_probs=37.4
Q ss_pred CCCEEEEECCCcc-HHH----HHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC--------
Q psy7830 134 NGSRVLDIGSGQG-YMA----TAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH-------- 198 (364)
Q Consensus 134 ~g~~VLDiGcGsG-~~a----~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~-------- 198 (364)
.+..+|-.|+++| .++ ..+++. +|+.++.++...+.+++.... .+ ...++..|+.+..
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~-----~g--~~~~~~~Dv~~~~~v~~~~~~ 79 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEE-----IG--CNFVSELDVTNPKSISNLFDD 79 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHh-----cC--CceEEEccCCCHHHHHHHHHH
Confidence 4567888888763 233 334444 787777764332223322222 11 2234567765421
Q ss_pred --CCCCCeeEEEEccC
Q psy7830 199 --AEGGPYDVIFFGAG 212 (364)
Q Consensus 199 --~~~~~fD~Ii~~~~ 212 (364)
...+..|+++.|..
T Consensus 80 ~~~~~g~iDilVnnag 95 (260)
T PRK06603 80 IKEKWGSFDFLLHGMA 95 (260)
T ss_pred HHHHcCCccEEEEccc
Confidence 11256888877653
No 495
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=53.41 E-value=65 Score=30.63 Aligned_cols=86 Identities=23% Similarity=0.157 Sum_probs=49.2
Q ss_pred CEEEEECCCcc--HHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830 136 SRVLDIGSGQG--YMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF 209 (364)
Q Consensus 136 ~~VLDiGcGsG--~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~ 209 (364)
++|.=||+|.- .++..+.+. +|+++|.+++.++.+++. +. ... ...+.... -...|+|+.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~---------g~-~~~-~~~~~~~~---~~~aDvVii 72 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL---------GL-GDR-VTTSAAEA---VKGADLVIL 72 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC---------CC-Cce-ecCCHHHH---hcCCCEEEE
Confidence 57888998862 233333332 689999999877665431 11 111 11121111 135799988
Q ss_pred ccChHH---HHHHHHhccCCCcEEEEEEcC
Q psy7830 210 GAGTTE---VSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 210 ~~~~~~---l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
..+... +.+.+...+++|..++ .++.
T Consensus 73 avp~~~~~~v~~~l~~~l~~~~iv~-dvgs 101 (307)
T PRK07502 73 CVPVGASGAVAAEIAPHLKPGAIVT-DVGS 101 (307)
T ss_pred CCCHHHHHHHHHHHHhhCCCCCEEE-eCcc
Confidence 776643 4556667788887554 3433
No 496
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=53.15 E-value=26 Score=33.07 Aligned_cols=96 Identities=14% Similarity=0.083 Sum_probs=52.2
Q ss_pred EEEEECCCcc--HHHHHHHcc--eEEEEeCCHHHHHHHHHHHHh----cCC-CCCC-------CCCEEEEEcCCCCCCCC
Q psy7830 137 RVLDIGSGQG--YMATAKEWL--SSVRQLLLPETLNNSLKNIKI----SRP-DLLQ-------SKTLEFILKDARWGHAE 200 (364)
Q Consensus 137 ~VLDiGcGsG--~~a~~la~~--~V~~vDis~~~l~~a~~~~~~----~~~-~~l~-------~~~v~~~~~D~~~~~~~ 200 (364)
+|.=||+|.= .++..++.. .|+.+|.+++.++.+.++... +.. ..+. ..++.+. .|..+.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~--- 78 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLKAA--- 78 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHHHh---
Confidence 5777888742 233344444 899999999999988765322 000 0000 0123222 222111
Q ss_pred CCCeeEEEEccChH-----HHHHHHHhccCCCcEEEEEEcC
Q psy7830 201 GGPYDVIFFGAGTT-----EVSKTILSQLKPNGRIVAPVGN 236 (364)
Q Consensus 201 ~~~fD~Ii~~~~~~-----~l~~~l~~~LkpGG~Lvi~~~~ 236 (364)
-...|+|+...+-. .++..+.+.++++.+++....+
T Consensus 79 ~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt 119 (288)
T PRK09260 79 VADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTST 119 (288)
T ss_pred hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 13468888654432 3456677888888766554433
No 497
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=52.83 E-value=66 Score=30.69 Aligned_cols=95 Identities=14% Similarity=-0.004 Sum_probs=49.9
Q ss_pred CCEEEEECCCccHHHHHHHcc-------eEEEEeCCH-------------------HHHHHHHHHHHh-cCCCCCCCCCE
Q psy7830 135 GSRVLDIGSGQGYMATAKEWL-------SSVRQLLLP-------------------ETLNNSLKNIKI-SRPDLLQSKTL 187 (364)
Q Consensus 135 g~~VLDiGcGsG~~a~~la~~-------~V~~vDis~-------------------~~l~~a~~~~~~-~~~~~l~~~~v 187 (364)
..+||=+|||. ++..+++. +++.+|.+. ...+.+.+++.+ |. .-++
T Consensus 19 ~s~VLIvG~gG--LG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp-----~V~V 91 (286)
T cd01491 19 KSNVLISGLGG--LGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNP-----YVPV 91 (286)
T ss_pred cCcEEEEcCCH--HHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCC-----CCEE
Confidence 56899999873 33333332 788888653 234455556666 21 1234
Q ss_pred EEEEcCCCCCCCCCCCeeEEEEccChHHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830 188 EFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNVW 238 (364)
Q Consensus 188 ~~~~~D~~~~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~~~~~ 238 (364)
+......... .-..||+|+....-......+-+..+..++-++.....+
T Consensus 92 ~~~~~~~~~~--~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~G 140 (286)
T cd01491 92 TVSTGPLTTD--ELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISADTRG 140 (286)
T ss_pred EEEeccCCHH--HHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 4444432111 125799888765433333344445554555555554443
No 498
>PRK07904 short chain dehydrogenase; Provisional
Probab=52.29 E-value=61 Score=29.65 Aligned_cols=74 Identities=20% Similarity=0.168 Sum_probs=45.7
Q ss_pred CCCCCEEEEECCCccHHHHHHHc----c---eEEEEeCCHHH-HHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC----
Q psy7830 132 LQNGSRVLDIGSGQGYMATAKEW----L---SSVRQLLLPET-LNNSLKNIKISRPDLLQSKTLEFILKDARWGHA---- 199 (364)
Q Consensus 132 l~~g~~VLDiGcGsG~~a~~la~----~---~V~~vDis~~~-l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~---- 199 (364)
+..+.+||-.|+++| ++..+++ . +|+.++.+++. ++.+.+.+.. .+..++.++.+|..+...
T Consensus 5 ~~~~~~vlItGas~g-iG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~-----~~~~~v~~~~~D~~~~~~~~~~ 78 (253)
T PRK07904 5 VGNPQTILLLGGTSE-IGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKA-----AGASSVEVIDFDALDTDSHPKV 78 (253)
T ss_pred cCCCcEEEEEcCCcH-HHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHh-----cCCCceEEEEecCCChHHHHHH
Confidence 456778999998654 4444433 2 78888888764 5555555544 222378888888764220
Q ss_pred -----CCCCeeEEEEcc
Q psy7830 200 -----EGGPYDVIFFGA 211 (364)
Q Consensus 200 -----~~~~fD~Ii~~~ 211 (364)
..+..|+++.+.
T Consensus 79 ~~~~~~~g~id~li~~a 95 (253)
T PRK07904 79 IDAAFAGGDVDVAIVAF 95 (253)
T ss_pred HHHHHhcCCCCEEEEee
Confidence 114689887654
No 499
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=52.27 E-value=60 Score=29.04 Aligned_cols=72 Identities=13% Similarity=0.052 Sum_probs=45.0
Q ss_pred CCCEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC--------
Q psy7830 134 NGSRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA-------- 199 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~-------- 199 (364)
++.++|-.|++ |.++..+++. +|+.++.++..++.+.+.+.. . ..++.++..|+.+...
T Consensus 4 ~~~~~lItG~~-g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~-----~-~~~~~~~~~D~~~~~~~~~~~~~~ 76 (253)
T PRK08217 4 KDKVIVITGGA-QGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGA-----L-GTEVRGYAANVTDEEDVEATFAQI 76 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----c-CCceEEEEcCCCCHHHHHHHHHHH
Confidence 46789988864 4455444433 899999998777666555544 1 1367778888754210
Q ss_pred --CCCCeeEEEEccC
Q psy7830 200 --EGGPYDVIFFGAG 212 (364)
Q Consensus 200 --~~~~fD~Ii~~~~ 212 (364)
..+..|.|+.+..
T Consensus 77 ~~~~~~id~vi~~ag 91 (253)
T PRK08217 77 AEDFGQLNGLINNAG 91 (253)
T ss_pred HHHcCCCCEEEECCC
Confidence 0145788887643
No 500
>PRK06484 short chain dehydrogenase; Validated
Probab=52.01 E-value=86 Score=31.97 Aligned_cols=69 Identities=17% Similarity=0.040 Sum_probs=42.8
Q ss_pred CCCEEEEECCCccHHHHHHHc----c--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC---------
Q psy7830 134 NGSRVLDIGSGQGYMATAKEW----L--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH--------- 198 (364)
Q Consensus 134 ~g~~VLDiGcGsG~~a~~la~----~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~--------- 198 (364)
.+..+|-.|++.| ++..+++ . +|+.++.++..++...+... .++..+..|+.+..
T Consensus 268 ~~k~~lItGas~g-IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~~~~~~~~~ 337 (520)
T PRK06484 268 SPRVVAITGGARG-IGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALG---------DEHLSVQADITDEAAVESAFAQI 337 (520)
T ss_pred CCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC---------CceeEEEccCCCHHHHHHHHHHH
Confidence 4677888887655 4444443 3 89999998877766554331 24556677765421
Q ss_pred -CCCCCeeEEEEccC
Q psy7830 199 -AEGGPYDVIFFGAG 212 (364)
Q Consensus 199 -~~~~~fD~Ii~~~~ 212 (364)
...+..|+++.|..
T Consensus 338 ~~~~g~id~li~nAg 352 (520)
T PRK06484 338 QARWGRLDVLVNNAG 352 (520)
T ss_pred HHHcCCCCEEEECCC
Confidence 01256899887654
Done!