RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7830
(364 letters)
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
methyltransferase, isomerization, protein repair,
S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
melanogaster} SCOP: c.66.1.7
Length = 227
Score = 140 bits (355), Expect = 5e-40
Identities = 57/213 (26%), Positives = 88/213 (41%), Gaps = 14/213 (6%)
Query: 61 RSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSY 120
+ D + LK+ ++ V +A R + P+ + D P V + P
Sbjct: 14 ANNEDLIRQLKDHGVIASDAVAQAMKETDRKHYS---PRNPYMDAPQPIGGGVTISAPHM 70
Query: 121 IARCLEQLVDHLQNGSRVLDIGSGQGY-------MATAKEWLSSVRQL---LLPETLNNS 170
A LE L DHL+ G+R+LD+GSG GY AK + R + E + S
Sbjct: 71 HAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRS 130
Query: 171 LKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRI 230
N+ +L S L + D R G+ PY+ I GA + +++QL GR+
Sbjct: 131 KANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRL 190
Query: 231 VAPVGNV-WRQNLSVIDKGPDGSISSKILRRVS 262
+ PVG Q + DK +G + L V
Sbjct: 191 IVPVGPDGGSQYMQQYDKDANGKVEMTRLMGVM 223
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl
homocysteine, protein repair; HET: SAH; 1.50A {Homo
sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Length = 226
Score = 139 bits (352), Expect = 1e-39
Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 15/211 (7%)
Query: 61 RSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSY 120
S+++ + L++ ++ +V E A R+ + + D P + Q + P
Sbjct: 7 ASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYA---KCNPYMDSPQSIGFQATISAPHM 63
Query: 121 IARCLEQLVDHLQNGSRVLDIGSGQGY----MATAKEWLSSV----RQLLLPETLNNSLK 172
A LE L D L G++ LD+GSG G A V E +++S+
Sbjct: 64 HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHI---KELVDDSVN 120
Query: 173 NIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVA 232
N++ P LL S ++ ++ D R G+AE PYD I GA V + ++ QLKP GR++
Sbjct: 121 NVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLIL 180
Query: 233 PVGNV-WRQNLSVIDKGPDGSISSKILRRVS 262
PVG Q L DK DGSI K L V
Sbjct: 181 PVGPAGGNQMLEQYDKLQDGSIKMKPLMGVI 211
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A
methyltransferase; protein repair, isoaspartyl
formation, P. falciparum; HET: SAH; 2.00A {Plasmodium
falciparum}
Length = 227
Score = 138 bits (349), Expect = 3e-39
Identities = 57/215 (26%), Positives = 99/215 (46%), Gaps = 17/215 (7%)
Query: 61 RSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSY 120
++ LE LK R +++ V V R +I + + D P ++ V + P
Sbjct: 10 NNHKSLLENLKRRGIIDDDDVYNTMLQVDRGKYI---KEIPYIDTPVYISHGVTISAPHM 66
Query: 121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLL---------LPETLNNSL 171
A L++L++ L+ GSR +D+GSG GY+ +V + + + +N SL
Sbjct: 67 HALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSL 126
Query: 172 KNIKISRPDLLQSKTLEFILKDA----RWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPN 227
+NIK +P+LL+ + I K+ E G +D I GA +E+ + ++ L N
Sbjct: 127 ENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASELPEILVDLLAEN 186
Query: 228 GRIVAPVGNVWRQNLSVIDKGPDGSISSKILRRVS 262
G+++ P+ + Q L I K +G I L V
Sbjct: 187 GKLIIPIEEDYTQVLYEITK-KNGKIIKDRLFDVC 220
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann
methyltransferase, protein repair isomerization; HET:
SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB:
1jg2_A* 1jg3_A* 1jg4_A*
Length = 235
Score = 116 bits (292), Expect = 9e-31
Identities = 58/225 (25%), Positives = 94/225 (41%), Gaps = 26/225 (11%)
Query: 46 MYDEDNENEENFFYTRSYADFLEGLKERKLLNHPRVEEAFYAVRRADFI-NVKPKFGFCD 104
M DE E+ +E LK ++ VE AF R + + K+ D
Sbjct: 11 MMDEKELYEKW-------MRTVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHID 63
Query: 105 IPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMAT-----AKEWLSSV- 158
P + P +A LE +L+ G +L++G+G G+ A K + ++
Sbjct: 64 EPLPIPAGQTVSAPHMVAIMLEIA--NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIE 121
Query: 159 RQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSK 218
R PE + + +N++ K + IL D G PYDVI AG ++ +
Sbjct: 122 RI---PELVEFAKRNLE-----RAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPE 173
Query: 219 TILSQLKPNGRIVAPVGNV-WRQNLSVIDKGPDGSISSKILRRVS 262
++ QLK G+++ PVG+ Q L + K DG I K V+
Sbjct: 174 PLIEQLKIGGKLIIPVGSYHLWQELLEVRKTKDG-IKIKNHGGVA 217
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 114 bits (287), Expect = 3e-30
Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 21/204 (10%)
Query: 68 EGLKERKLLNHPRVEEAFYAVRRADFI-NVKPKFGFCDIPYAFANQVVMEPPSYIARCLE 126
E L + RV +A V R +F+ ++ + D P + + E
Sbjct: 12 EKLIREGYIKSKRVIDALLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIHMVGMMCE 71
Query: 127 QLVDHLQNGSRVLDIGSGQGY-------MATAKEWLSSV-RQLLLPETLNNSLKNIKISR 178
L L+ G +VL+IG+G GY + + S+ R PE + + ++
Sbjct: 72 LL--DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERI---PELAEKAERTLR--- 123
Query: 179 PDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNVW 238
L + I+ D G+ PYD I+ A ++ + ++ QLK G+++ PVG +
Sbjct: 124 --KLGYDNVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVGR-Y 180
Query: 239 RQNLSVIDKGPDGSISSKILRRVS 262
Q L + +K D I K V+
Sbjct: 181 LQRLVLAEKRGDE-IIIKDCGPVA 203
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 110 bits (276), Expect = 2e-28
Identities = 43/193 (22%), Positives = 73/193 (37%), Gaps = 21/193 (10%)
Query: 78 HPRVEEAFYAVRRADFI-NVKPKFGFCDIPYAF--ANQVVMEPPSYIARCLEQLVDHLQN 134
+ EAF V R+ F+ + + A + + L++L L
Sbjct: 13 TQELAEAFNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNLGIFMLDEL--DLHK 70
Query: 135 GSRVLDIGSGQGYMATAKEWLSS-VRQL----LLPETLNNSLKNIKISRPDLLQSKTLEF 189
G +VL+IG+G GY ++ V ++ + + N + K L ++
Sbjct: 71 GQKVLEIGTGIGYYTAL---IAEIVDKVVSVEINEKMYNYASKL-------LSYYNNIKL 120
Query: 190 ILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNVWRQNLSVIDKGP 249
IL D G+ E PYD + A + QLK G ++ P+G Q L + K
Sbjct: 121 ILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIGVGRVQKLYKVIKKG 180
Query: 250 DGSISSKILRRVS 262
+ S + L V
Sbjct: 181 NS-PSLENLGEVM 192
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type
fold, S-adenosyl-L- methionine; HET: SAH; 1.80A
{Escherichia coli}
Length = 210
Score = 104 bits (261), Expect = 1e-26
Identities = 50/205 (24%), Positives = 75/205 (36%), Gaps = 23/205 (11%)
Query: 66 FLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFG---FCDIPYAFANQVVMEPPSYIA 122
L+ L+ + + + +V A AV R F V F + +I + P +A
Sbjct: 11 LLDQLRAQGIQD-EQVLNALAAVPREKF--VDEAFEQKAWDNIALPIGQGQTISQPYMVA 67
Query: 123 RCLEQLVDHLQNGSRVLDIGSGQGYMAT-----AKEWLSSVRQLLLPETLNNSLKNIKIS 177
R E L L SRVL+IG+G GY + S R L LKN+ +
Sbjct: 68 RMTELL--ELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLH 125
Query: 178 RPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNV 237
+ D G P+D I A E+ +++QL G +V PVG
Sbjct: 126 N--------VSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGEE 177
Query: 238 WRQNLSVIDKGPDGSISSKILRRVS 262
Q L + + G + V
Sbjct: 178 -HQYLKRVRRR-GGEFIIDTVEAVR 200
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 105 bits (264), Expect = 4e-26
Identities = 46/199 (23%), Positives = 76/199 (38%), Gaps = 25/199 (12%)
Query: 79 PRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYI------ARCLEQLVDHL 132
+ +AF + R +F+ + + E S A +E + L
Sbjct: 16 DHIAKAFLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWV--GL 73
Query: 133 QNGSRVLDIGSGQGY-------MATAKEWLSSV-RQLLLPETLNNSLKNIKISRPDLLQS 184
G RVL+IG G GY + K + SV + E +++ + I
Sbjct: 74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN------ 127
Query: 185 KTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGN-VWRQNLS 243
+ F+ D +G E PYDVIF G EV +T +QLK GR++ P+ + R+ +
Sbjct: 128 --VIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLKLSRRQPA 185
Query: 244 VIDKGPDGSISSKILRRVS 262
+ K D +
Sbjct: 186 FLFKKKDPYLVGNYKLETR 204
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 53.5 bits (129), Expect = 1e-08
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 5/105 (4%)
Query: 132 LQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL 191
+D+G G G + E VR++ + ++ +++ + +
Sbjct: 31 PGKNDVAVDVGCGTGGVTL--ELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLME 88
Query: 192 KDARWGHAEGGPYDVIFFGAG---TTEVSKTILSQLKPNGRIVAP 233
DA + D+ G E+ + I +LKP GRI+
Sbjct: 89 GDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVT 133
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 53.8 bits (129), Expect = 2e-08
Identities = 22/133 (16%), Positives = 41/133 (30%), Gaps = 5/133 (3%)
Query: 131 HLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFI 190
+L RVL+ G+G G + ++ E + K + + K ++F
Sbjct: 88 NLNKEKRVLEFGTGSGALLAV--LSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFF 145
Query: 191 LKDARWGHAEGGPYDVIFFGAGT-TEVSKTILSQLKPNGRIVA--PVGNVWRQNLSVIDK 247
D + G + F + + L + P N + L I+
Sbjct: 146 NVDFKDAEVPEGIFHAAFVDVREPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIEN 205
Query: 248 GPDGSISSKILRR 260
+IL R
Sbjct: 206 YFGNLEVVEILHR 218
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 49.0 bits (117), Expect = 3e-07
Identities = 33/136 (24%), Positives = 44/136 (32%), Gaps = 20/136 (14%)
Query: 108 AFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLL---- 163
+ A + A + L + + DIG G G +A EWL S Q
Sbjct: 1 SNATDGQLTKQHVRALAISAL--APKPHETLWDIGGGSGSIAI--EWLRSTPQTTAVCFE 56
Query: 164 --PETLNNSLKNIKISRPDLLQSKTLEFILKDAR--WGHAEGGPYDVIFFGAGTT--EVS 217
E L N L + + A + P DVIF G G T V
Sbjct: 57 ISEERRERILSNA-----INLGVSDRIAVQQGAPRAFDDVPDNP-DVIFIGGGLTAPGVF 110
Query: 218 KTILSQLKPNGRIVAP 233
+L GR+VA
Sbjct: 111 AAAWKRLPVGGRLVAN 126
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 46.7 bits (111), Expect = 2e-06
Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 5/128 (3%)
Query: 108 AFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETL 167
AFA+ + A L L + G + DIG G G ++ EW + + + E
Sbjct: 31 AFAHDGQITKSPMRALTLAAL--APRRGELLWDIGGGSGSVSV--EWCLAGGRAITIEPR 86
Query: 168 NNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTE-VSKTILSQLKP 226
+ ++NI+ + S + + A A+ + +F G G ++ + + L P
Sbjct: 87 ADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGGSQALYDRLWEWLAP 146
Query: 227 NGRIVAPV 234
RIVA
Sbjct: 147 GTRIVANA 154
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 46.1 bits (109), Expect = 4e-06
Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 16/113 (14%)
Query: 131 HLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLL------PETLNNSLKNIKISRPDLLQS 184
LQ+ + DIG+G ++ E + + + P+ L N +
Sbjct: 37 RLQDDLVMWDIGAGSASVSI--EASNLMPNGRIFALERNPQYLGFIRDN-----LKKFVA 89
Query: 185 KTLEFILKDARWGHAEGGPYDVIFFGAG---TTEVSKTILSQLKPNGRIVAPV 234
+ + + A G + D +F G E+ + +LK G IV
Sbjct: 90 RNVTLVEAFAPEGLDDLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNA 142
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI,
tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Length = 258
Score = 45.0 bits (106), Expect = 1e-05
Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 4/136 (2%)
Query: 104 DIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATA-KEWLSSVRQLL 162
+ P + + L L G RVL+ G+G G + + +
Sbjct: 68 EYLLHMKRSATPTYPKDASAMVTLL--DLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVE 125
Query: 163 LPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGT-TEVSKTIL 221
E + L + + Q + + F L E YD + +V +
Sbjct: 126 SYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVALDLMEPWKVLEKAA 185
Query: 222 SQLKPNGRIVAPVGNV 237
LKP+ +VA + N+
Sbjct: 186 LALKPDRFLVAYLPNI 201
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 2e-05
Identities = 48/262 (18%), Positives = 82/262 (31%), Gaps = 74/262 (28%)
Query: 14 VLAVFFILVSRGQGWKPDPGMPIEPPPDLRSEMYDEDNENEENFFYTRSYADFLEGLKER 73
+ V F + R P L + ++ EN E S + L +
Sbjct: 299 AITVLFFIGVRCYE--------AYPNTSLPPSILEDSLENNEG---VPSPMLSISNLTQE 347
Query: 74 KLLNHPRVEEAFYAVRRADFINVK--PKFGFCDIPYAFANQVVMEPPSYIARCLEQLVDH 131
++ ++ + + I++ K N VV PP + L L
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLVNGAK-----------NLVVSGPP----QSLYGLNLT 392
Query: 132 LQNGSRVLDIGSGQGYMATAKEWLSSVRQL-----LLPETLNNSLKNIKISRP---DLLQ 183
L+ G Q ++ S R+L LP ++ P LL
Sbjct: 393 LRKAKA--PSGLDQ-----SRIPFSE-RKLKFSNRFLP-----------VASPFHSHLLV 433
Query: 184 SKTLEFILKDA-----RWGHAE-GGP-YDVIFFGAGTTEVSKTILSQLKPNGRIV-APVG 235
+ I KD + + P YD F G+ +S +I ++ I+ PV
Sbjct: 434 P-ASDLINKDLVKNNVSFNAKDIQIPVYDT-FDGSDLRVLSGSISERIVD--CIIRLPV- 488
Query: 236 NVWRQNLS-----VIDKGPDGS 252
W ++D GP G+
Sbjct: 489 -KWETTTQFKATHILDFGPGGA 509
Score = 38.5 bits (89), Expect = 0.004
Identities = 40/232 (17%), Positives = 79/232 (34%), Gaps = 72/232 (31%)
Query: 15 LAVFFILVSRGQGWKPD-PGMPIEPPPDLRS---EMYDEDNEN---------EENFFYTR 61
L + F +G+ + + M E D + +++ E NE+ + T+
Sbjct: 1672 LTIHFGG-EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ 1730
Query: 62 ---------SYADFLEGLKERKLLN-------HP--------------RVEEAFYAVR-R 90
A F E LK + L+ H +E V R
Sbjct: 1731 FTQPALTLMEKAAF-EDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR 1789
Query: 91 ADFI-NVKPKFGFCDIPYAFANQVVMEPPSYIAR-----CLEQLVDHLQNGS-RVLDI-- 141
+ P+ Y ++ P +A L+ +V+ + + +++I
Sbjct: 1790 GMTMQVAVPRDELGRSNYG----MIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN 1845
Query: 142 --GSGQGYMATAKEWLSSVRQLLLPETLNNSLKNIKISRPDLLQ---SKTLE 188
Q Y A + L ++ +T+ N L IK+ + D+++ S +LE
Sbjct: 1846 YNVENQQY-VAAGD-LRAL------DTVTNVLNFIKLQKIDIIELQKSLSLE 1889
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 43.2 bits (102), Expect = 6e-05
Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 17/128 (13%)
Query: 119 SYIARCLEQLVDHL--QNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNNSLKNIKI 176
S++ + E L+ L Q G +LD+G G G + ++ S ++L +N+ I+
Sbjct: 40 SFVWQYGEDLLQLLNPQPGEFILDLGCGTGQL--TEKIAQSGAEVLG---TDNAATMIEK 94
Query: 177 SRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAG------TTEVSKTILSQLKPNGRI 230
+R + L F + DAR + P D +F A +I LK GR
Sbjct: 95 ARQNYPH---LHFDVADARNFRVD-KPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRF 150
Query: 231 VAPVGNVW 238
VA G
Sbjct: 151 VAEFGGKG 158
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 41.7 bits (97), Expect = 2e-04
Identities = 32/194 (16%), Positives = 57/194 (29%), Gaps = 25/194 (12%)
Query: 65 DFLEGLKERKLLNHPRVEEAFYAVRRADFINVKP-------KFGFCDIPYAFANQVVMEP 117
++ + +L+ + A +R+ + D P+ P
Sbjct: 46 STIDFESAKHILDDAEMNHALSLIRKFYVNLGMKLEMEKAQEVIESDSPWETLRSFYFYP 105
Query: 118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQL------LLPETLNNSL 171
E + + G R + IG G + LS V + + P+ S
Sbjct: 106 RYLELLKNEAALGRFRRGERAVFIGGGPLPLTGI--LLSHVYGMRVNVVEIEPDIAELSR 163
Query: 172 KNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTE---VSKTILSQLKPNG 228
K I+ D + I D +G +DV+ A V + I +
Sbjct: 164 KVIEGLGVD-----GVNVITGDET--VIDGLEFDVLMVAALAEPKRRVFRNIHRYVDTET 216
Query: 229 RIVAPVGNVWRQNL 242
RI+ R L
Sbjct: 217 RIIYRTYTGMRAIL 230
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 40.3 bits (95), Expect = 3e-04
Identities = 25/110 (22%), Positives = 38/110 (34%), Gaps = 22/110 (20%)
Query: 132 LQNGSRVLDIGSGQGYMATAKEWLSSVRQLL----LPETLNNSLKNIKISRPDLLQSKTL 187
L V+D+G G G M E + + L + + +N+ K
Sbjct: 33 LNKDDVVVDVGCGSGGMTV--EIAKRCKFVYAIDYLDGAIEVTKQNLA-----KFNIKNC 85
Query: 188 EFILKDARWGHAEGG----PYDVIFFGAGTTEVSKTI-LSQLKPNGRIVA 232
+ I G AE ++ F G GT + K I + K IVA
Sbjct: 86 QIIK-----GRAEDVLDKLEFNKAFIG-GTKNIEKIIEILDKKKINHIVA 129
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 40.8 bits (95), Expect = 3e-04
Identities = 22/131 (16%), Positives = 40/131 (30%), Gaps = 10/131 (7%)
Query: 107 YAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPET 166
Y V+ P L L +RVL+ G G G A + +
Sbjct: 21 YRHPWARVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGP--DAARFGPQAARWAA--- 75
Query: 167 LNNSLKNIKISRPDLLQSKTLEFILKDA--RWGHAEGGPYDVIFFGAGTTEVSKTILSQL 224
+ S + +K++R + + + G P+ +I G T V +
Sbjct: 76 YDFSPELLKLARA---NAPHADVYEWNGKGELPAGLGAPFGLIVSRRGPTSVILRLPELA 132
Query: 225 KPNGRIVAPVG 235
P+ +
Sbjct: 133 APDAHFLYVGP 143
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 39.8 bits (93), Expect = 8e-04
Identities = 29/127 (22%), Positives = 43/127 (33%), Gaps = 30/127 (23%)
Query: 121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNNSLKNIKISRPD 180
A L ++ G+R+LD+GSG G M + I +S
Sbjct: 25 YATLGRVL--RMKPGTRILDLGSGSGEML-----------CTWARDHGITGTGIDMSSLF 71
Query: 181 LLQSKT----------LEFILKDARWGHAEGGPYDVIF-FGA-----GTTEVSKTILSQL 224
Q+K + FI DA G+ DV GA G + + L
Sbjct: 72 TAQAKRRAEELGVSERVHFIHNDAA-GYVANEKCDVAACVGATWIAGGFAGAEELLAQSL 130
Query: 225 KPNGRIV 231
KP G ++
Sbjct: 131 KPGGIML 137
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 39.6 bits (92), Expect = 0.001
Identities = 26/155 (16%), Positives = 47/155 (30%), Gaps = 9/155 (5%)
Query: 104 DIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLL 163
D + + P + L ++ G R++D G G G M +V
Sbjct: 84 DEIMNMKRRTQIVYPKDSSFIAMML--DVKEGDRIIDTGVGSGAMCAV--LARAVGSSGK 139
Query: 164 PETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA--EGGPYDVIFFGAGTT-EVSKTI 220
+ K++ +L + +E + R + D +F
Sbjct: 140 VFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDVPDPWNYIDKC 199
Query: 221 LSQLKPNGRIVA--PVGNVWRQNLSVIDKGPDGSI 253
LK GR P N ++ L + + P I
Sbjct: 200 WEALKGGGRFATVCPTTNQVQETLKKLQELPFIRI 234
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 38.8 bits (90), Expect = 0.002
Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 5/111 (4%)
Query: 132 LQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNNSLKNIKISRPDLLQ---SKTLE 188
+ G +++ G G G + + V + K++ ++ +
Sbjct: 91 ISPGDFIVEAGVGSGALTLF--LANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVT 148
Query: 189 FILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNVWR 239
LKD G E VI V + LKP G VA +
Sbjct: 149 IKLKDIYEGIEEENVDHVILDLPQPERVVEHAAKALKPGGFFVAYTPCSNQ 199
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 38.6 bits (90), Expect = 0.002
Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%)
Query: 121 IARCLEQLVDHLQNGSRVLDIGSGQGYMAT--AKEWLSSVRQLLLPETLNNSLKNIKISR 178
+ L + L S+VLDIGSG G +++ + ++ + ++
Sbjct: 44 TKKILSDI--ELNENSKVLDIGSGLGGGCMYINEKYGAHT------HGIDICSNIVNMAN 95
Query: 179 PDLLQSKTLEFILKDARWGHAEGGPYDVIF-FGAGT-------TEVSKTILSQLKPNGRI 230
+ + + F D +D+I+ A ++ + LKP G +
Sbjct: 96 ERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTL 155
Query: 231 V 231
+
Sbjct: 156 L 156
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 38.0 bits (88), Expect = 0.003
Identities = 21/129 (16%), Positives = 46/129 (35%), Gaps = 23/129 (17%)
Query: 119 SYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPET---LNNSLKNIK 175
+ L + + + + RVLDIG G+G E+L ++ + +N +
Sbjct: 26 ELVKARLRRYIPYFKGCRRVLDIGCGRG------EFLELCKEEGIESIGVDINEDMIKFC 79
Query: 176 ISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFG--------AGTTEVSKTILSQLKPN 227
+ ++++S +E++ D + E+ S++K +
Sbjct: 80 EGKFNVVKSDAIEYLKSLPD------KYLDGVMISHFVEHLDPERLFELLSLCYSKMKYS 133
Query: 228 GRIVAPVGN 236
IV N
Sbjct: 134 SYIVIESPN 142
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 37.1 bits (86), Expect = 0.004
Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 20/123 (16%)
Query: 121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPET----LNNSLKNIKI 176
+ +LD+G+G G ++ +L PE ++ S K ++I
Sbjct: 31 FYGVSVSIASVDTENPDILDLGAGTGLLS---AFLME----KYPEATFTLVDMSEKMLEI 83
Query: 177 SRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAG--------TTEVSKTILSQLKPNG 228
++ + +++I D E YD++ E+ K S LK +G
Sbjct: 84 AKNRFRGNLKVKYIEADYSKYDFE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESG 142
Query: 229 RIV 231
+
Sbjct: 143 IFI 145
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 36.9 bits (85), Expect = 0.005
Identities = 21/125 (16%), Positives = 39/125 (31%), Gaps = 17/125 (13%)
Query: 119 SYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQL----LLPETLNNSLKNI 174
+ L+ + N +V+D+G G+G + + S Q+ + L + +
Sbjct: 19 GTVVAVLKSV-----NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRL 73
Query: 175 KISRPDLLQSKTLEFILKDARWGHAEGGPYDVI--------FFGAGTTEVSKTILSQLKP 226
KI R +Q K + + YD K + +P
Sbjct: 74 KIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRP 133
Query: 227 NGRIV 231
IV
Sbjct: 134 QTVIV 138
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 36.7 bits (85), Expect = 0.007
Identities = 29/151 (19%), Positives = 50/151 (33%), Gaps = 27/151 (17%)
Query: 132 LQNGSRVLDIGSGQGYMAT--AKEWLSSVRQLLLPET-LNNSLKNIKISR---PDLLQSK 185
LQ ++ LD+G+G G A +++ S+ LN + K + +
Sbjct: 80 LQRQAKGLDLGAGYGGAARFLVRKFGVSI-------DCLNIAPVQNKRNEEYNNQAGLAD 132
Query: 186 TLEFILKDARWGHAEGGPYDVIF-FGAGT-----TEVSKTILSQLKPNGRIVAPVGNVWR 239
+ E YD I+ A +V + LKP G +
Sbjct: 133 NITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAI---TDP- 188
Query: 240 QNLSVIDKGPDGSISSKILRRVSSDFLCNLE 270
+ + G D S IL R+ + +L
Sbjct: 189 ----MKEDGIDKSSIQPILDRIKLHDMGSLG 215
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 35.9 bits (83), Expect = 0.013
Identities = 25/149 (16%), Positives = 46/149 (30%), Gaps = 41/149 (27%)
Query: 116 EPPSYIARCLEQLVDHL-QNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNN----- 169
+ Y L+ H+ + VLDIG G + +
Sbjct: 13 KSGHYYNAVNPNLLKHIKKEWKEVLDIGCSSGALG---------------AAIKENGTRV 57
Query: 170 -----SLKNIKISRPDLLQSKTLEFILKDARWGHA--EGGPYDVIFFG------AGTTEV 216
+ + ++ K +L D E +D + FG V
Sbjct: 58 SGIEAFPEAAEQAK-----EKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDPWAV 112
Query: 217 SKTILSQLKPNGRIVAPVGNVWRQNLSVI 245
+ + +K NG I+A + N ++SV+
Sbjct: 113 IEKVKPYIKQNGVILASIPN--VSHISVL 139
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 35.2 bits (81), Expect = 0.018
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 125 LEQLVDHLQNGSRVLDIGSGQGYMA 149
L + + L G+++L++G G GY A
Sbjct: 34 LTKFLGELPAGAKILELGCGAGYQA 58
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase
S-adenosly-L-methionine dependent methyltransfer
posttranslational modification; 1.59A {Thermus
thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A
2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A*
3egv_A* 3cjt_A*
Length = 254
Score = 35.3 bits (82), Expect = 0.020
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 12/113 (10%)
Query: 124 CLEQLVDHLQNGSRVLDIGSGQGY--MATAKEWLSSVRQLLLPETLNNSLKNIKISRPDL 181
L+ L HL+ G +VLD+G+G G +A K ++ + P L + N K +
Sbjct: 110 ALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNG--- 166
Query: 182 LQSKTLEFILKDARWGHAEGGPYDVIF--FGAGT-TEVSKTILSQLKPNGRIV 231
++ + LE L+ A GP+D++ A ++ L P GR +
Sbjct: 167 VRPRFLEGSLEAA----LPFGPFDLLVANLYAELHAALAPRYREALVPGGRAL 215
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 34.9 bits (80), Expect = 0.021
Identities = 23/129 (17%), Positives = 42/129 (32%), Gaps = 15/129 (11%)
Query: 117 PPSYIARCLEQLVDHLQ--NGSRVLDIGSGQGYMATAKEWLSSVRQL----LLPETLNNS 170
R + +V L+ N RV+D+G GQG + S Q+ + +L +
Sbjct: 11 ISLNQQR-MNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIA 69
Query: 171 LKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVS--------KTILS 222
+ + R Q + L+ I + YD + + +
Sbjct: 70 QERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFE 129
Query: 223 QLKPNGRIV 231
+P IV
Sbjct: 130 FAQPKIVIV 138
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase,
SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus
delbrueckii subsp}
Length = 205
Score = 34.5 bits (80), Expect = 0.032
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 124 CLEQLVDHLQNGSRVLDIGSGQG 146
+ + + V D+G+G G
Sbjct: 50 AMLGIERAMVKPLTVADVGTGSG 72
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 34.5 bits (79), Expect = 0.034
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 125 LEQLVDHLQNGSRVLDIGSGQGYMATA 151
LE + + G+ +LD+GS Y+
Sbjct: 6 LELVASFVSQGAILLDVGSDHAYLPIE 32
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.0 bits (77), Expect = 0.041
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
Query: 43 RSEMYDEDNENEENFFYTRSYADFLEGLKERKLLNHPRV-EEAFYAVRRADFI 94
E ++ ++ E + E +++ K+ N R+ ++AFY AD I
Sbjct: 109 EQEWREKAKKDLEEW-----NQRQSEQVEKNKINN--RIADKAFYQQPDADII 154
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 34.1 bits (78), Expect = 0.055
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 125 LEQLVDHLQNGSRVLDIGSGQGYMATA 151
LE++ ++ R+ DIGS Y+
Sbjct: 12 LEKVASYITKNERIADIGSDHAYLPCF 38
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 33.7 bits (77), Expect = 0.059
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 125 LEQLVDHLQNGSRVLDIGSGQGYMATA 151
L+++ +++ G+R+LD+GS Y+
Sbjct: 12 LQKVANYVPKGARLLDVGSDHAYLPIF 38
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 34.0 bits (77), Expect = 0.070
Identities = 23/140 (16%), Positives = 39/140 (27%), Gaps = 18/140 (12%)
Query: 112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLL-----PET 166
+ P I L + + G VL+ GSG G M+ + ++ +
Sbjct: 87 AITF--PKDINMILSMM--DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDH 142
Query: 167 LNNSLKNIKISRPDLLQSKTLEFILKDARW--------GHAEGGPYDVIFFGAGTT-EVS 217
+ + KN K R S E+ + +D +
Sbjct: 143 HDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTL 202
Query: 218 KTILSQLKPNGRIVAPVGNV 237
LK G V N+
Sbjct: 203 PVFYPHLKHGGVCAVYVVNI 222
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH;
1.37A {Mesembryanthemum crystallinum}
Length = 237
Score = 33.4 bits (77), Expect = 0.085
Identities = 26/174 (14%), Positives = 54/174 (31%), Gaps = 37/174 (21%)
Query: 115 MEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGY----MATAKEWLSSVRQLLLPE----- 165
M + + ++ L N + +++G GY A + +P+
Sbjct: 52 MSTSPLAGQLMSFVL-KLVNAKKTIEVGVFTGYSLLLTALS-----------IPDDGKIT 99
Query: 166 TLNNSLKNIKISRPDLLQSKT---LEFILKDA-------RWGHAEGGPYDVIFFGA---G 212
++ + +I P + ++ + FI DA G G YD F A
Sbjct: 100 AIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPN 159
Query: 213 TTEVSKTILSQLKPNGRIVAPVGNVWRQNLSVIDKGPDGSISSKILRRVSSDFL 266
+ + ++ +K G + N +V + K R +
Sbjct: 160 YIKYHERLMKLVKVGGIVA--YDNTLWGG-TVAQPESEVPDFMKENREAVIELN 210
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
transferase; 1.90A {Geobacter sulfurreducens pca}
Length = 210
Score = 32.9 bits (76), Expect = 0.093
Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 32/160 (20%)
Query: 122 ARCLEQLVDHLQNGSRVLDIGSGQGY----MATAKEWLSSVRQLLLPE-----TLNNSLK 172
R L L ++ V+ G G G A A + ++
Sbjct: 45 GRLLYLLA-RIKQPQLVVVPGDGLGCASWWFARA-----------ISISSRVVMIDPDRD 92
Query: 173 NIKISRPDLLQS---KTLEFILKDARWGHAEGGPYDVIFFGA---GTTEVSKTILSQLKP 226
N++ +R L + +E + D A D++F +V + + L
Sbjct: 93 NVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDCDVFNGADVLERMNRCLAK 152
Query: 227 NGRIVAPVGNVWRQNLSVIDKGPDGSISS--KILRRVSSD 264
N ++A N R+ SV + D ++ + +S
Sbjct: 153 NALLIAV--NALRRG-SVAESHEDPETAALREFNHHLSRR 189
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 32.9 bits (75), Expect = 0.096
Identities = 26/198 (13%), Positives = 48/198 (24%), Gaps = 35/198 (17%)
Query: 107 YAFANQVVMEPPSYIARCLEQLVDHL--QNGSRVLDIGSGQGYMATAKEWLSSVRQLLLP 164
Y Q + E +++ + ++ VL+ G G G + + L + R +
Sbjct: 16 YDSFVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLT--NKLLLAGRTVYG- 72
Query: 165 ETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAG--------TTEV 216
+ S + I++ L K D D I
Sbjct: 73 --IEPSREMRMIAKEKL--PKEFSITEGDFLSFEVPT-SIDTIVSTYAFHHLTDDEKNVA 127
Query: 217 SKTILSQLKPNGRIVAPVGNVWRQNLSVIDKGPDGSISSKILRRVSSDFLCNLEYQLHPD 276
L G+IV D K + L L +
Sbjct: 128 IAKYSQLLNKGGKIVFADTI-----------FADQDAYDKTVEAAKQRGFHQLANDLQTE 176
Query: 277 VFPQPLNTSAEDTYTKMF 294
+ + +F
Sbjct: 177 YYTRI------PVMQTIF 188
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 33.1 bits (75), Expect = 0.097
Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 3/103 (2%)
Query: 132 LQNGSRVLDIGSGQGYMATA-KEWLSSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFI 190
L+ G +L++G G G M++ L+ L + E ++LK + + +
Sbjct: 108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTS 167
Query: 191 LKDARWGHAEGGPYDVIFFGAGT-TEVSKTILSQLKPNGRIVA 232
D ++ YD + + I S +KP
Sbjct: 168 RSDIADFISD-QMYDAVIADIPDPWNHVQKIASMMKPGSVATF 209
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold,
protein-cofactor-substrate complex; HET: SAH FRE; 2.70A
{Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Length = 247
Score = 33.1 bits (76), Expect = 0.10
Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 34/140 (24%)
Query: 115 MEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGY----MATAKEWLSSVRQLLLPE----- 165
M + + L L+ L N ++IG GY A A +PE
Sbjct: 61 MTTSADEGQFLSMLL-KLINAKNTMEIGVYTGYSLLATALA-----------IPEDGKIL 108
Query: 166 TLNNSLKNIKISRPDLLQSKT---LEFILKDAR-------WGHAEGGPYDVIFFGA---G 212
++ + +N ++ P + ++ ++F A G YD IF A
Sbjct: 109 AMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDN 168
Query: 213 TTEVSKTILSQLKPNGRIVA 232
K ++ +K G I
Sbjct: 169 YLNYHKRLIDLVKVGGVIGY 188
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 32.9 bits (75), Expect = 0.12
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 18/71 (25%)
Query: 80 RVEEAFYAV-RRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRV 138
R E + + R D + PK+ Y L ++L+N RV
Sbjct: 16 RSWEFYDRIARAYDSMYETPKWKL-----------------YHRLIGSFLEEYLKNPCRV 58
Query: 139 LDIGSGQGYMA 149
LD+G G G +
Sbjct: 59 LDLGGGTGKWS 69
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 32.9 bits (75), Expect = 0.13
Identities = 17/116 (14%), Positives = 38/116 (32%), Gaps = 18/116 (15%)
Query: 127 QLVDHLQNGSRVLDIGSGQGYMAT--AKEWLSSVRQLLLPET-LNNSLKNIKISR---PD 180
++ L + +++ DIG G G A + T ++ I+I
Sbjct: 39 SFINELTDDAKIADIGCGTGGQTLFLADYVKGQI-------TGIDLFPDFIEIFNENAVK 91
Query: 181 LLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVS-KTILSQ----LKPNGRIV 231
+ ++ I + D+I+ + + +++ LK G I
Sbjct: 92 ANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIA 147
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 32.5 bits (74), Expect = 0.15
Identities = 21/121 (17%), Positives = 35/121 (28%), Gaps = 32/121 (26%)
Query: 135 GSRVLDIGSGQGYMATAKEWLS-----------SVRQLLLPETLNNSLKNIKISRPDLLQ 183
RVLD+G G+G++ L+ + +R
Sbjct: 53 PERVLDLGCGEGWLL---RALADRGIEAVGVDGDRTLV-------------DAARAAGAG 96
Query: 184 SKTLEFILKDARWGHAEGGPYDVIFFGAG-----TTEVSKTILSQLKPNGRIVAPVGNVW 238
L + A G YD+I E+ + + L P G +V + W
Sbjct: 97 EVHLASYAQLAEAKVPVGKDYDLICANFALLHQDIIELLSAMRTLLVPGGALVIQTLHPW 156
Query: 239 R 239
Sbjct: 157 S 157
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural
genomics, protein structure initiative; HET: SAM; 1.98A
{Mycobacterium tuberculosis} SCOP: c.66.1.13
Length = 280
Score = 32.8 bits (74), Expect = 0.15
Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 4/111 (3%)
Query: 131 HLQNGSRVLDIGSGQGYMATA-KEWLSSVRQLLLPETLNNSLKNIK--ISRPDLLQSKTL 187
+ G+RVL+ G+G G + + + Q++ E + ++ + +S
Sbjct: 96 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNW 155
Query: 188 EFILKDARWGHAEGGPYDVIFFGAGT-TEVSKTILSQLKPNGRIVAPVGNV 237
++ D G D EV + L G ++ V V
Sbjct: 156 RLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATV 206
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 32.6 bits (74), Expect = 0.16
Identities = 12/146 (8%), Positives = 36/146 (24%), Gaps = 38/146 (26%)
Query: 114 VMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATA--------------KEWLSSVR 159
+++ + E VL++ +G G + L++ R
Sbjct: 62 LIQDADGTSEAREFATRTGPVSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFR 121
Query: 160 QLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF-----FGAGTT 214
+ +++ + D A + +
Sbjct: 122 K--------------RLAEAPADVRDRCTLVQGDMSA-FALDKRFGTVVISSGSINELDE 166
Query: 215 EVSKTILSQ----LKPNGRIVAPVGN 236
+ + + L+P G+ + +
Sbjct: 167 ADRRGLYASVREHLEPGGKFLLSLAM 192
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 32.1 bits (73), Expect = 0.16
Identities = 24/134 (17%), Positives = 43/134 (32%), Gaps = 17/134 (12%)
Query: 112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATA--------------KEWLSS 157
+++ P +++ L + L + S V+D G G ++ L
Sbjct: 2 NAMIKRPIHMSHDF--LAEVLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGK 59
Query: 158 VRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVS 217
Q L + N + I +L G+ VI T E
Sbjct: 60 TSQRLSDLGIEN-TELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAI 118
Query: 218 KTILSQLKPNGRIV 231
+ IL +L+ GR+
Sbjct: 119 EKILDRLEVGGRLA 132
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 32.9 bits (74), Expect = 0.19
Identities = 16/99 (16%), Positives = 29/99 (29%), Gaps = 8/99 (8%)
Query: 60 TRSYADFLEGL----KERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPY-AFANQVV 114
YA F + L + +N P
Sbjct: 641 VGEYASFKMTPPDAAEALILAVGSDTVRIRSLLSERPCLNYNILLLGVKGPSEERMEAAF 700
Query: 115 MEPPSYIARCLEQLVDHLQ--NGSRVLDIGSGQGYMATA 151
+PP R +E + H++ + S ++D G G G + +
Sbjct: 701 FKPPLSKQR-VEYALKHIRESSASTLVDFGCGSGSLLDS 738
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 32.2 bits (73), Expect = 0.19
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 119 SYIARCLEQLVDHLQNGSRVLDIGSGQGYMA 149
S I L+ +++ +VLD+ G G +
Sbjct: 23 SRIETLEPLLMKYMKKRGKVLDLACGVGGFS 53
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 32.1 bits (73), Expect = 0.20
Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 28/125 (22%)
Query: 127 QLVDHL-QNGSRVLDIGSGQGYMATAKEWLS----SVRQLLLPET-LNNSLKNIKISRPD 180
+L+D + G+++LD G GQG + +LS V + I ++ D
Sbjct: 38 RLIDAMAPRGAKILDAGCGQGRIG---GYLSKQGHDV-------LGTDLDPILIDYAKQD 87
Query: 181 LLQSKTLEFILKDARWGHAEGGPYDVIF-----FGAGTTEVSKTILSQ----LKPNGRIV 231
+ +++ D +D+I G + + L+ L +GR V
Sbjct: 88 FPE---ARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAV 144
Query: 232 APVGN 236
G
Sbjct: 145 IGFGA 149
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 32.2 bits (73), Expect = 0.20
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 128 LVDHLQNGSRVLDIGSGQGYMA 149
+D+L S + DIG G G
Sbjct: 40 FIDNLTEKSLIADIGCGTGGQT 61
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 31.8 bits (72), Expect = 0.22
Identities = 17/136 (12%), Positives = 36/136 (26%), Gaps = 43/136 (31%)
Query: 116 EPPSYIARCLEQLVDHLQNGSRVLDIGSG----------QGYMATA----KEWLSSVRQL 161
EP ++ Q+ ++L + G GY TA L+ +QL
Sbjct: 16 EPNDFLVSVANQI-----PQGKILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQL 70
Query: 162 LLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGT------TE 215
+ + + + + ++ I +
Sbjct: 71 AQEKGVK------------------ITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQ 112
Query: 216 VSKTILSQLKPNGRIV 231
+ + LKP G +
Sbjct: 113 LYPKVYQGLKPGGVFI 128
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A
{Synechocystis SP}
Length = 232
Score = 31.9 bits (73), Expect = 0.22
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 39/164 (23%)
Query: 125 LEQLVDHLQNGSRVLDIGSGQGY----MATAKEWLSSVRQLLLPE-----TLNNSLKNIK 175
L L+ L +VL+IG +GY MA LP +
Sbjct: 64 LGLLI-SLTGAKQVLEIGVFRGYSALAMALQ-----------LPPDGQIIACDQDPNATA 111
Query: 176 ISRPDLLQSKT---LEFILKDAR------WGHAEGGPYDVIFFGA---GTTEVSKTILSQ 223
I++ ++ + L A +D+IF A + L+
Sbjct: 112 IAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADKRNYPRYYEIGLNL 171
Query: 224 LKPNGRIVAPVGNVWRQNLSVIDKGPDGSISSKI---LRRVSSD 264
L+ G +V + NV V + P + + + R ++ D
Sbjct: 172 LRRGGLMV--IDNVLWHG-KVTEVDPQEAQTQVLQQFNRDLAQD 212
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 32.4 bits (73), Expect = 0.22
Identities = 21/137 (15%), Positives = 47/137 (34%), Gaps = 27/137 (19%)
Query: 120 YIARCLEQLVDHLQNGS---RVLDIGSGQGYMATAKEWLSSVRQLLLPETLNN-----SL 171
++ + L ++ + + ++L IG G G + LS V+ +NN S
Sbjct: 35 FMDKKLPGIIGRIGDTKSEIKILSIGGGAG--EIDLQILSKVQAQYPGVCINNEVVEPSA 92
Query: 172 KNIKISRPDLLQSKTLEFILKDARWGHAE-----------GGPYDVIFFGAG---TTEVS 217
+ I + + ++ LE + + +D I ++
Sbjct: 93 EQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIP 152
Query: 218 KTI---LSQLKPNGRIV 231
T+ S L N +++
Sbjct: 153 ATLKFFHSLLGTNAKML 169
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.23
Identities = 22/114 (19%), Positives = 34/114 (29%), Gaps = 15/114 (13%)
Query: 256 KILRRVSSDFLCNLEYQLHPDVFPQPLNTSAE-DTYTKMFPPPPGVRPRAVTFPLSSQER 314
IL F+ N + + D P+ + + E D G R LS QE
Sbjct: 20 DILSVFEDAFVDNFDCKDVQD-MPKSILSKEEIDHIIMSKDAVSGTL-RLFWTLLSKQEE 77
Query: 315 SP----GNGSTKKYEFLPESTEDRYIFPQHI-------LDILHGPNKT-KSRHV 356
Y+FL + P + D L+ N+ +V
Sbjct: 78 MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Score = 31.0 bits (69), Expect = 0.82
Identities = 38/264 (14%), Positives = 69/264 (26%), Gaps = 96/264 (36%)
Query: 53 NEENF---FYTRSYADFLEGL---KE-RKLLNHPRVEEAFYAVRRADFINVKPK-----F 100
E+ F F + D + + +E ++ R + K + F
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL--RLFWTLLSKQEEMVQKF 82
Query: 101 --GFCDIPYAF-ANQVVMEP--PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL 155
I Y F + + E PS + R + D L N ++V +
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN------------ 130
Query: 156 SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTE 215
+SR L+ A
Sbjct: 131 --------------------VSRLQPYLK------LRQA--------------------- 143
Query: 216 VSKTILSQLKPNGRIV----APVGNVWRQNLSVIDKGPDGSISSKI----LRRVSSD--- 264
L +L+P ++ G W + + KI L+ +S
Sbjct: 144 -----LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 265 --FLCNLEYQLHPDVFPQPLNTSA 286
L L YQ+ P+ + ++S
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSN 222
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 32.2 bits (73), Expect = 0.24
Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 22/124 (17%)
Query: 128 LVDHLQN--GSRVLDIGSGQGYMATAKEWLSSVRQLLLPET----LNNSLKNIKISRPDL 181
+ HL ++D+G G G + + +++ + + +S N++ + P+
Sbjct: 214 FMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE- 272
Query: 182 LQSKTLEFILKDARWGHAEGGPYDVIF----FGAG---TTEVSKTILSQ----LKPNGR- 229
EF++ +A E ++ + F T V+ + LK NG
Sbjct: 273 -ALDRCEFMINNA-LSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGEL 330
Query: 230 -IVA 232
IVA
Sbjct: 331 YIVA 334
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 31.4 bits (71), Expect = 0.29
Identities = 16/119 (13%), Positives = 31/119 (26%), Gaps = 19/119 (15%)
Query: 131 HLQNGSRVLDIGSGQGYMAT--AKEWLSSVRQLLLPETLNNSLKNIKISRPDLLQSKTLE 188
++ G V+D G G A + ++ + + ++ N DL +
Sbjct: 19 FVKEGDTVVDATCGNGNDTAFLASL-VGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVT 77
Query: 189 FILKDARWG-HAEGGPYDVIFFG---------------AGTTEVSKTILSQLKPNGRIV 231
I + P + F T + + L G I
Sbjct: 78 LIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIIT 136
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella
burnetii}
Length = 225
Score = 31.5 bits (72), Expect = 0.31
Identities = 36/164 (21%), Positives = 59/164 (35%), Gaps = 39/164 (23%)
Query: 125 LEQLVDHLQNGSRVLDIGSGQGY----MATAKEWLSSVRQLLLPE-----TLNNSLKNIK 175
L LV L +V+DIG+ GY M A LP+ T + K+
Sbjct: 56 LALLV-KLMQAKKVIDIGTFTGYSAIAMGLA-----------LPKDGTLITCDVDEKSTA 103
Query: 176 ISRPDLLQSKT---LEFILKDAR------WGHAEGGPYDVIFFGA---GTTEVSKTILSQ 223
+++ ++ + L A+ + YD+I+ A T + L
Sbjct: 104 LAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADKANTDLYYEESLKL 163
Query: 224 LKPNGRIVAPVGNVWRQNLSVIDKGPDGSISSKI---LRRVSSD 264
L+ G I V NV R+ V D+ + I ++V D
Sbjct: 164 LREGGLIA--VDNVLRRG-QVADEENQSENNQLIRLFNQKVYKD 204
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 31.8 bits (72), Expect = 0.31
Identities = 16/119 (13%), Positives = 33/119 (27%), Gaps = 20/119 (16%)
Query: 125 LEQLVDHLQNGSRVLDIGSGQGYMAT--AKEWLSSVRQLLLPETLNNS-----LKNIKIS 177
L + ++D G G+G + + S V E + S N +
Sbjct: 108 LMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRV------EGVTLSAAQADFGNRRAR 161
Query: 178 RPDLLQSKTLEFILKDARWGHAEGGPYDVIF-FGAG----TTEVSKTILSQLKPNGRIV 231
+ + + + + G + + ++ LK GR V
Sbjct: 162 ELRI--DDHVRSRVCNMLDTPFDKGAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYV 218
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium; 1.88A {Klebsiella pneumoniae subsp}
Length = 248
Score = 31.5 bits (72), Expect = 0.37
Identities = 31/161 (19%), Positives = 55/161 (34%), Gaps = 39/161 (24%)
Query: 127 QLVDHLQNGSRVLDIGSGQGY----MATAKEWLSSVRQLLLPE-----TLNNSLKNIKIS 177
L+ L R+L+IG+ GY MA LP TL + +++
Sbjct: 56 ALLVRLTQAKRILEIGTLGGYSTIWMARE-----------LPADGQLLTLEADAHHAQVA 104
Query: 178 RPDLLQSKTLEFILKDARWGHA--------EGGPYDVIFFGA---GTTEVSKTILSQLKP 226
R +L + + + R G A E +D+IF A + L +P
Sbjct: 105 RENLQLAGVDQRV--TLREGPALQSLESLGECPAFDLIFIDADKPNNPHYLRWALRYSRP 162
Query: 227 NGRIVAPVGNVWRQNLSVIDKGPDGSISSKI---LRRVSSD 264
I+ NV R V++ + + + ++
Sbjct: 163 GTLII--GDNVVRDG-EVVNPQSADERVQGVRQFIEMMGAE 200
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 31.4 bits (71), Expect = 0.40
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 125 LEQLVDHLQNGSRVLDIGSGQGYMA 149
+ +++ + VLD+G G GY
Sbjct: 44 IPFFEQYVKKEAEVLDVGCGDGYGT 68
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Length = 242
Score = 31.1 bits (71), Expect = 0.41
Identities = 25/129 (19%), Positives = 44/129 (34%), Gaps = 33/129 (25%)
Query: 125 LEQLVDHLQNGSRVLDIGSGQGY----MATAKEWLSSVRQLLLPE-----TLNNSLKNIK 175
++ L+ L +VL++G+ GY M+ A LP+ T + + K
Sbjct: 52 MQMLI-RLTRAKKVLELGTFTGYSALAMSLA-----------LPDDGQVITCDINEGWTK 99
Query: 176 ISRPDLLQSKT---LEFILKDAR------WGHAEGGPYDVIFFGA---GTTEVSKTILSQ 223
+ P ++K ++ L A +D IF A + L
Sbjct: 100 HAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDADKTNYLNYYELALKL 159
Query: 224 LKPNGRIVA 232
+ P G I
Sbjct: 160 VTPKGLIAI 168
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 31.3 bits (71), Expect = 0.43
Identities = 22/125 (17%), Positives = 44/125 (35%), Gaps = 21/125 (16%)
Query: 121 IARCLEQLVDH--LQNGSRVLDIGSGQGYMAT--AKEWLSSVRQLLLPET-LNNSLKNIK 175
R ++++ +++G RVLD+G G G A A V T ++ S +
Sbjct: 46 TDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRV-------TGISISRPQVN 98
Query: 176 ISR---PDLLQSKTLEFILKDARWGHAEGGPYDVIF-FGAGT-----TEVSKTILSQLKP 226
+ + + F DA E +D ++ + + + L+P
Sbjct: 99 QANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRP 158
Query: 227 NGRIV 231
G +
Sbjct: 159 GGTVA 163
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics,
PSI, protein structure initiative; 1.80A {Sulfolobus
solfataricus P2} SCOP: b.40.4.15 PDB: 3irb_A
Length = 145
Score = 30.3 bits (68), Expect = 0.48
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 33 GMPIEPPPDLRSEMYDEDNENEENFFYT--RSYADFLEGLKERKLL 76
GM E S + D E + YT + F GLK+ K++
Sbjct: 1 GMSWEKSGKEGSLLRWYDVMEAERYEYTVGPAGEQFFNGLKQNKII 46
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 30.8 bits (70), Expect = 0.55
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 131 HLQNGSRVLDIGSGQGYMA 149
L+ G VLD+G+G G+
Sbjct: 34 GLKEGMTVLDVGTGAGFYL 52
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 30.8 bits (69), Expect = 0.55
Identities = 23/112 (20%), Positives = 35/112 (31%), Gaps = 22/112 (19%)
Query: 133 QNGSRVLDIGSGQGYMATAKEWLSSVRQLLLP-----ETLNNSLKNIKISRPDLLQSKTL 187
SR LD G+G G + + LL + L ++ ++ +L
Sbjct: 92 HGTSRALDCGAGIGRIT---------KNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVG 142
Query: 188 EFILKDARWGHAEGGPYDVIFFGAGT--------TEVSKTILSQLKPNGRIV 231
+FIL YD+I + K L PNG I
Sbjct: 143 KFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIF 194
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure initiative;
1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Length = 200
Score = 30.8 bits (69), Expect = 0.56
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 117 PPSYIAR-CLEQLVDHLQNGSRVLDIGSGQGYMATA 151
S A +E D G V+D G+G G +A
Sbjct: 33 DASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACG 68
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent
methyltransferase fold, trans; HET: SAM; 2.00A
{Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB:
2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Length = 318
Score = 31.0 bits (71), Expect = 0.57
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 121 IARCLEQLVDHLQNGSRVLDIGSGQGYMA 149
+ L++L L+ G +LDIG G G
Sbjct: 79 VDLNLDKL--DLKPGMTLLDIGCGWGTTM 105
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 30.6 bits (69), Expect = 0.59
Identities = 5/25 (20%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 125 LEQLVDHLQNGSRVLDIGSGQGYMA 149
+ + G +L++GS +G
Sbjct: 34 VRAFTPFFRPG-NLLELGSFKGDFT 57
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta
with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB:
3dul_A*
Length = 223
Score = 30.7 bits (70), Expect = 0.61
Identities = 33/161 (20%), Positives = 59/161 (36%), Gaps = 37/161 (22%)
Query: 127 QLVDHLQNGSRVLDIGSGQGY----MATAKEWLSSVRQLLLPE-----TLNNSLKNIKIS 177
QL+ +Q +L+IG+ GY +A L TL S K+ I+
Sbjct: 51 QLLVQIQGARNILEIGTLGGYSTIWLARG-----------LSSGGRVVTLEASEKHADIA 99
Query: 178 RPDLLQS---KTLEFILKDA-----RWGHAEGGPYDVIFFGA---GTTEVSKTILSQLKP 226
R ++ ++ +E A + + + P+D IF A + L +P
Sbjct: 100 RSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQNNPAYFEWALKLSRP 159
Query: 227 NGRIVAPVGNVWRQNLSVIDKGPDGSISSKI---LRRVSSD 264
I+ NV R+ VID + I ++++
Sbjct: 160 GTVII--GDNVVREG-EVIDNTSNDPRVQGIRRFYELIAAE 197
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 30.7 bits (69), Expect = 0.62
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 125 LEQLVDHLQNGSRVLDIGSGQGYMA 149
L V + ++D G G GY+
Sbjct: 13 LVNTVWKITKPVHIVDYGCGYGYLG 37
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure
initiative, NEW research center for structural genomics,
nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Length = 233
Score = 30.7 bits (70), Expect = 0.63
Identities = 27/159 (16%), Positives = 54/159 (33%), Gaps = 36/159 (22%)
Query: 122 ARCLEQLVDHLQNGSRVLDIGSGQGY----MATAKEWLSSVRQLLLPE----TLNNSLKN 173
L L+ + +R+L+IG+ GY MA A LPE ++ +
Sbjct: 43 MESLLHLL-KMAAPARILEIGTAIGYSAIRMAQA-----------LPEATIVSIERDERR 90
Query: 174 IKISRPDLLQSKTLEFILKDARWGHA--------EGGPYDVIFFGA---GTTEVSKTILS 222
+ + + I + +G A +DV+F A
Sbjct: 91 YEEAHKHVKALGLESRI--ELLFGDALQLGEKLELYPLFDVLFIDAAKGQYRRFFDMYSP 148
Query: 223 QLKPNGRIVAPVGNVWRQNLSVIDKGPDGSISSKILRRV 261
++P G I++ NV + V + + ++ ++
Sbjct: 149 MVRPGGLILSD--NVLFRG-LVAETDIEHKRHKQLATKI 184
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 30.4 bits (68), Expect = 0.74
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 125 LEQLVDHLQNGSRVLDIGSGQGYMA 149
L HL+ G V + G
Sbjct: 109 RRALQRHLRPGCVVASVPCGWMSEL 133
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 30.4 bits (68), Expect = 0.77
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 132 LQNGSRVLDIGSGQGYMATA 151
++ G ++L+IG GQG ++
Sbjct: 41 VKPGEKILEIGCGQGDLSAV 60
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand
complex, cytoplasm, lipid synthesis, methyltransferase;
HET: D22; 2.39A {Mycobacterium tuberculosis} PDB:
1kpi_A*
Length = 302
Score = 30.7 bits (70), Expect = 0.77
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 131 HLQNGSRVLDIGSGQGYMA 149
+L+ G +LDIG G G
Sbjct: 69 NLEPGMTLLDIGCGWGSTM 87
>2avd_A Catechol-O-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens}
SCOP: c.66.1.1
Length = 229
Score = 30.4 bits (69), Expect = 0.78
Identities = 31/158 (19%), Positives = 53/158 (33%), Gaps = 30/158 (18%)
Query: 127 QLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPE-----TLNNSLKNIKISRPDL 181
+ L + LD+G+ GY A L+ L LP T + ++ RP
Sbjct: 62 ANLARLIQAKKALDLGTFTGYSAL---ALA----LALPADGRVVTCEVDAQPPELGRPLW 114
Query: 182 LQSKT---LEFILKDAR------WGHAEGGPYDVIFFGA---GTTEVSKTILSQLKPNGR 229
Q++ ++ LK A E G +DV A + + L L+P G
Sbjct: 115 RQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGI 174
Query: 230 IVAPVGNVWRQNLSVIDKGPDGSISSKI---LRRVSSD 264
+ V + V+ + + R+ D
Sbjct: 175 LAVL--RVLWRG-KVLQPPKGDVAAECVRNLNERIRRD 209
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1;
mixed alpha beta fold, structural genomics, PSI; HET:
SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP:
c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Length = 287
Score = 30.2 bits (69), Expect = 0.87
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 131 HLQNGSRVLDIGSGQGYMA 149
LQ G +LD+G G G
Sbjct: 61 GLQPGMTLLDVGCGWGATM 79
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 29.6 bits (67), Expect = 0.88
Identities = 5/26 (19%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 126 EQLVDHL--QNGSRVLDIGSGQGYMA 149
E+ + ++ ++D G G G+
Sbjct: 7 EEYLPNIFEGKKGVIVDYGCGNGFYC 32
>3fbg_A Putative arginate lyase; structural genomics, unknown function,
PSI-2, protein structure initiative; 1.60A
{Staphylococcus haemolyticus}
Length = 346
Score = 30.3 bits (69), Expect = 0.97
Identities = 10/46 (21%), Positives = 16/46 (34%)
Query: 198 HAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNVWRQNLS 243
D +F T ++ +KP G I V Q+L+
Sbjct: 212 TQGIELVDYVFCTFNTDMYYDDMIQLVKPRGHIATIVAFENDQDLN 257
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 30.1 bits (68), Expect = 1.0
Identities = 23/131 (17%), Positives = 50/131 (38%), Gaps = 28/131 (21%)
Query: 125 LEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLN-----NSLKNIKISRP 179
+ +++ ++ G R+ DIG G G LLL + S + ++I++
Sbjct: 24 VAWVLEQVEPGKRIADIGCGTGTAT-----------LLLADHYEVTGVDLSEEMLEIAQE 72
Query: 180 DLLQSK-TLEFILKDARWGHAEGGPYDVIF-----FGAGTTE-----VSKTILSQLKPNG 228
+++ ++F ++D R P D I TE + L G
Sbjct: 73 KAMETNRHVDFWVQDMRELELP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGG 131
Query: 229 RIVAPVGNVWR 239
+++ V + ++
Sbjct: 132 KLLFDVHSPYK 142
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 29.9 bits (67), Expect = 1.1
Identities = 10/43 (23%), Positives = 14/43 (32%)
Query: 107 YAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMA 149
Y E IA + V L++G G G +A
Sbjct: 12 YDRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIA 54
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium, nysgrc; 1.99A {Rhizobium etli}
Length = 363
Score = 30.0 bits (68), Expect = 1.1
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 201 GGPYDVIFFGAGTTEVSKTILSQLKPNGRIV 231
G +F T + + I + P GR
Sbjct: 237 LGAPAFVFSTTHTDKHAAEIADLIAPQGRFC 267
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 29.9 bits (67), Expect = 1.1
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 108 AFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMA 149
+ V S LE+L VL++ SG GY
Sbjct: 21 EYDATFVPYMDSAAPAALERLRA-GNIRGDVLELASGTGYWT 61
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 30.0 bits (68), Expect = 1.2
Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 27/124 (21%)
Query: 128 LVDHLQNGS--RVLDIGSGQGYMATAKEWLSSVRQLLLPET----LNNSLKNIKISRPDL 181
L+ L + +VLD+G G G ++ A S +L L + + S + + +
Sbjct: 188 LLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE- 246
Query: 182 LQSKTLEFILKDARWGHAEGGPYDVIF----F---GAGTTEVSKTILSQ----LKPNGR- 229
E + G +D+I F + + ++T++ L G
Sbjct: 247 -----GEVFASNVFSEVK--GRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGEL 299
Query: 230 -IVA 232
IVA
Sbjct: 300 RIVA 303
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 29.6 bits (66), Expect = 1.3
Identities = 4/36 (11%), Positives = 8/36 (22%)
Query: 116 EPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATA 151
+ L + ++D G G
Sbjct: 38 NVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKF 73
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.25A {Corynebacterium glutamicum}
Length = 221
Score = 29.2 bits (66), Expect = 1.7
Identities = 12/149 (8%), Positives = 36/149 (24%), Gaps = 35/149 (23%)
Query: 137 RVLDIGSGQGY----MATAKEWLSSVRQLLLPE-----TLNNSLKNIKISRPDL----LQ 183
+ I G + L + ++ ++ + ++
Sbjct: 59 GAIAITPAAGLVGLYILNG-----------LADNTTLTCIDPESEHQRQAKALFREAGYS 107
Query: 184 SKTLEFILKDAR--WGHAEGGPYDVIFFGAGTTEVS---KTILSQLKPNGRIVAPVGNVW 238
+ F+L Y ++F ++ L+ G +V +
Sbjct: 108 PSRVRFLLSRPLDVMSRLANDSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVLA--DAL 165
Query: 239 RQNLSVIDKGPDGSISSKI---LRRVSSD 264
++ D+ + + S
Sbjct: 166 LDG-TIADQTRKDRDTQAARDADEYIRSI 193
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 29.5 bits (66), Expect = 1.7
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 117 PPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATA 151
+ + L +L GS + DIG+G G + A
Sbjct: 19 DIRIVNAIINLL--NLPKGSVIADIGAGTGGYSVA 51
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 29.7 bits (66), Expect = 1.8
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 132 LQNGSRVLDIGSGQGYMA 149
G+ VLD+G G G
Sbjct: 81 SLEGATVLDLGCGTGRDV 98
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 29.5 bits (65), Expect = 1.8
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 125 LEQLVDHLQNGSRVLDIGSGQGYMATA 151
L L G VLD+G G++ +
Sbjct: 37 LRVLKPEWFRGRDVLDLGCNVGHLTLS 63
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 29.4 bits (66), Expect = 1.8
Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 30/128 (23%)
Query: 120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPET------LNNSLKN 173
++ ++ + RVLD+ G G L L E L+ +
Sbjct: 29 FVEEIFKED--AKREVRRVLDLACGTGIPT-----------LELAERGYEVVGLDLHEEM 75
Query: 174 IKISRPDLLQSK-TLEFILKDARWGHAEGGPYDVIF-----FGAGTTEVSKTILSQ---- 223
++++R + +EF+ D A +D + E + + S+
Sbjct: 76 LRVARRKAKERNLKIEFLQGDVL-EIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEA 134
Query: 224 LKPNGRIV 231
LKP G +
Sbjct: 135 LKPGGVFI 142
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP
binding, binding, capsid protein; HET: GTA SAH; 1.45A
{Yellow fever virus} PDB: 3evb_A* 3evc_A* 3evd_A*
3eve_A* 3eva_A*
Length = 277
Score = 29.2 bits (65), Expect = 1.8
Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 14/96 (14%)
Query: 120 YIARC---LEQLVD--HLQNGSRVLDIGSGQG---YMATAKEWLSSVRQLLLPETLNNSL 171
++R L + +++ RV+D+G G+G Y A A++ +S V+ L +
Sbjct: 55 AVSRGTAKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKP 114
Query: 172 KNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI 207
N++ +++ K I + E D +
Sbjct: 115 MNVQSLGWNIITFKDKTDIHR------LEPVKCDTL 144
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 29.3 bits (65), Expect = 1.8
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 113 VVMEPPSYIARCLEQLVDHLQNGSRVLDIGS 143
V+ P + I + E +V ++ G+ VL + +
Sbjct: 72 VLALPDNIIEKVAEDIVPRVRPGTIVLILDA 102
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase,
PSI, protei structure initiative; HET: MSE; 2.05A
{Escherichia coli} SCOP: c.66.1.46
Length = 202
Score = 28.7 bits (65), Expect = 2.1
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 13/69 (18%)
Query: 172 KNIKISRPDLLQSKTLEFILKDA-RWGHAEGGPYDVIF----FGAGTTEVSKTILSQ--- 223
KN+ L++ + +A + +G P++++F F G E + +L
Sbjct: 95 KNLA-----TLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGW 149
Query: 224 LKPNGRIVA 232
L I
Sbjct: 150 LADEALIYV 158
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 29.0 bits (65), Expect = 2.2
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 125 LEQLVD--HLQNGSRVLDIGSGQGYMA 149
L +L+ L+ VLD+ +G G++A
Sbjct: 26 LAKLMQIAALKGNEEVLDVATGGGHVA 52
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 28.8 bits (65), Expect = 2.3
Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 23/121 (19%)
Query: 128 LVDHL--QNGSRVLDIGSGQGYMATAKEWLSSVRQLLL----PETLNNSLKNIKISRPDL 181
LV+++ +LD+G G G + A V+ + + + +NIK++
Sbjct: 44 LVENVVVDKDDDILDLGCGYGVIGIAL--ADEVKSTTMADINRRAIKLAKENIKLNN--- 98
Query: 182 LQSKTLEFILKDARWGHAEGGPYDVIF----FGAGTTEVSKTILSQ----LKPNGR--IV 231
L + + + D + + Y+ I AG EV I+ + LK NG +V
Sbjct: 99 LDNYDIRVVHSDLY-ENVKDRKYNKIITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVV 156
Query: 232 A 232
Sbjct: 157 I 157
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 28.8 bits (64), Expect = 2.4
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 18/88 (20%)
Query: 128 LVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNNSLKNIKISRPDLLQSK-- 185
L L+ R+L +G G ++ L ++ ++ S + +
Sbjct: 36 LEPELRPEDRILVLGCGNSALSYE-----------LFLGGFPNVTSVDYSSVVVAAMQAC 84
Query: 186 -----TLEFILKDARWGHAEGGPYDVIF 208
L + D R +DV+
Sbjct: 85 YAHVPQLRWETMDVRKLDFPSASFDVVL 112
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 28.6 bits (64), Expect = 2.5
Identities = 9/35 (25%), Positives = 12/35 (34%)
Query: 115 MEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMA 149
+ Q V L R ++IG G G A
Sbjct: 28 FLVHRFAYLSELQAVKCLLPEGRGVEIGVGTGRFA 62
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH;
2.30A {Leptospira interrogans}
Length = 239
Score = 28.8 bits (65), Expect = 2.6
Identities = 34/175 (19%), Positives = 52/175 (29%), Gaps = 50/175 (28%)
Query: 125 LEQLVDHLQNGSRVLDIGSGQGY----MATAKEWLSSVRQLLLPE-----TLNNSLKNIK 175
L L + R+++IG+ GY A+A LPE + S +
Sbjct: 52 LNILT-KISGAKRIIEIGTFTGYSSLCFASA-----------LPEDGKILCCDVSEEWTN 99
Query: 176 ISRPDLLQSKT---LEFILKDA-----------------RWGHAEGGPYDVIFFGA---G 212
++R ++ + L A D+ F A
Sbjct: 100 VARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKEN 159
Query: 213 TTEVSKTILSQLKPNGRIVAPVGNVWRQNLSVIDKGPDGSISSKI---LRRVSSD 264
IL LKP G ++A NV SV D + I V +D
Sbjct: 160 YPNYYPLILKLLKPGGLLIAD--NVLWDG-SVADLSHQEPSTVGIRKFNELVYND 211
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography
structure, oxidoreductase; HET: OMT NAP; 1.55A
{Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Length = 279
Score = 28.7 bits (65), Expect = 2.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 117 PPSYIARCLEQLVDHLQNGSRVLDIGS 143
P I LE+L+ HL + V D+ S
Sbjct: 66 PIQLILPTLEKLIPHLSPTAIVTDVAS 92
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 28.7 bits (64), Expect = 2.7
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 131 HLQNGSRVLDIGSGQGYMA 149
G++VL+ G G G
Sbjct: 34 VYPPGAKVLEAGCGIGAQT 52
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 28.3 bits (63), Expect = 3.0
Identities = 6/28 (21%), Positives = 10/28 (35%), Gaps = 3/28 (10%)
Query: 125 LEQLVDHLQN---GSRVLDIGSGQGYMA 149
L + + + VLD G+G
Sbjct: 11 LYRFLKYCNESNLDKTVLDCGAGGDLPP 38
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 28.2 bits (63), Expect = 3.1
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 125 LEQLVDHLQNGSRVLDIGSGQGYMATA 151
++ L VLD+G+ G +
Sbjct: 14 MDALEREGLEMKIVLDLGTSTGVITEQ 40
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 28.2 bits (63), Expect = 3.5
Identities = 19/128 (14%), Positives = 31/128 (24%), Gaps = 34/128 (26%)
Query: 120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPET------LNNSLKN 173
IA + S +LD+ G G + L S
Sbjct: 29 DIADLVRS---RTPEASSLLDVACGTGTHL-----------EHFTKEFGDTAGLELSEDM 74
Query: 174 IKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF-----FGAGTTE-----VSKTILSQ 223
+ +R + D R G + + G T +
Sbjct: 75 LTHAR---KRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEH 130
Query: 224 LKPNGRIV 231
L+P G +V
Sbjct: 131 LEPGGVVV 138
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase,
transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Length = 232
Score = 28.4 bits (64), Expect = 3.6
Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 26/126 (20%)
Query: 122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPE-----TLNNSLKNIKI 176
++QL+ + N +L+IG+ GY SS++ + + T+ + I+
Sbjct: 60 LDLIKQLI-RMNNVKNILEIGTAIGY--------SSMQFASISDDIHVTTIERNETMIQY 110
Query: 177 SRPDLLQSKTLEFILKDARWGHA-------EGGPYDVIFFGA---GTTEVSKTILSQLKP 226
++ +L + G+A YD+IF A + + + LK
Sbjct: 111 AKQNLATYHFENQV--RIIEGNALEQFENVNDKVYDMIFIDAAKAQSKKFFEIYTPLLKH 168
Query: 227 NGRIVA 232
G ++
Sbjct: 169 QGLVIT 174
>2bbr_A Viral CAsp8 and FADD-like apoptosis regulator; viral protein; 1.20A
{Molluscum contagiosum virus subtype 1} PDB: 2f1s_A
Length = 195
Score = 28.1 bits (62), Expect = 3.6
Identities = 19/129 (14%), Positives = 43/129 (33%), Gaps = 11/129 (8%)
Query: 65 DFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARC 124
L L +++ L + E Y ++R D + + + +
Sbjct: 44 QALCSLSQQRKLTLAALVEMLYVLQRMDLLKSRFGLSKEGAEQLLGTSFLTRYRKLMVCV 103
Query: 125 LEQLV-DHLQNGSRVL--DIGSGQGYMATAKEWLSSVRQL-----LLPETLNNSLKNI-- 174
E+L L+ S ++ + ++ V L + P +++ L ++
Sbjct: 104 GEELDSSELRALRLFACNLNPSLSTALSESSRFVELVLALENVGLVSPSSVSV-LADMLR 162
Query: 175 KISRPDLLQ 183
+ R DL Q
Sbjct: 163 TLRRLDLCQ 171
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB
prenylation, post-translational modification, protein
binding/protein transport complex; HET: GER GDP PG4;
2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB:
1vg9_A* 1ltx_R*
Length = 650
Score = 28.8 bits (63), Expect = 3.7
Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 2/81 (2%)
Query: 98 PKFGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSS 157
P +G ++P F + Y R Q + + + + G +K ++
Sbjct: 373 PLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIE 432
Query: 158 VRQLLLPETLNNSLKNIKISR 178
L E + ++ +ISR
Sbjct: 433 --DSYLSENTCSRVQYRQISR 451
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 28.5 bits (63), Expect = 4.0
Identities = 27/224 (12%), Positives = 63/224 (28%), Gaps = 42/224 (18%)
Query: 118 PSYIARCLEQLVDHLQN-GSRVLDIGSGQG----YMATAKEWLSSV-------RQL---- 161
PSY + + + ++ ++D+G G G MA + + +
Sbjct: 19 PSYPSDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAE 78
Query: 162 LLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAG-----TTEV 216
++ E ++ KN+ K + D+I +
Sbjct: 79 VIKEGSPDTYKNVSFKISSSDD-------FKFLGADSVDKQKIDMITAVECAHWFDFEKF 131
Query: 217 SKTILSQLKPNGRIVAPVGNVWRQNLSVIDKGPDGSISSKILRRVSSDFLCNLEYQLHPD 276
++ + L+ +G I +W + P+ + + + L P
Sbjct: 132 QRSAYANLRKDGTIA-----IWGYADPIFPDYPE-------FDDLMIEVPYGKQG-LGPY 178
Query: 277 VFPQPLNTSAEDTYTKMFPPPPGVRPRAVTFPLSSQERSPGNGS 320
+ QP + + P V++ + R
Sbjct: 179 -WEQPGRSRLRNMLKDSHLDPELFHDIQVSYFCAEDVRDKVKLH 221
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 28.2 bits (63), Expect = 4.0
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 125 LEQLVD--HLQNGSRVLDIGSGQGYMA 149
L ++ + RVLDIG+G G+ A
Sbjct: 10 LGLMIKTAECRAEHRVLDIGAGAGHTA 36
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 27.8 bits (62), Expect = 4.1
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 115 MEPPSYIARCLEQLVD-HLQNGSRVLDIGSGQGYMATA 151
+Y+ E+ + L G +L++G+G GY
Sbjct: 16 TPLGAYVIAEEERALKGLLPPGESLLEVGAGTGYWLRR 53
>2bbz_A Viral CAsp8 and FADD-like apoptosis regulator; death effector
domain, viral protein; 3.80A {Molluscum contagiosum
virus subtype 1}
Length = 249
Score = 28.2 bits (62), Expect = 4.1
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 62 SYADFLEGLKERKLLNHPRVEEAFYAVRRAD 92
+ L L +++ L + E Y ++R D
Sbjct: 41 TVTQALCSLSQQRKLTLAALVEMLYVLQRMD 71
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A
{Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Length = 281
Score = 28.3 bits (64), Expect = 4.2
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 117 PPSYIARCLEQLVDHLQNGSRVLDIGS 143
P ++L L + V D GS
Sbjct: 71 PVRTFREIAKKLSYILSEDATVTDQGS 97
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 27.8 bits (62), Expect = 4.3
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 107 YAFANQVVMEPPSYIARCLEQLVDHLQ-NGSRVLDIGSGQGYMA 149
++ + P I E +++ +DIGSG G ++
Sbjct: 17 MDEISKTLFAPIYPIIA--ENIINRFGITAGTCIDIGSGPGALS 58
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta,
oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus}
PDB: 3ggg_D* 3ggp_A*
Length = 314
Score = 28.0 bits (63), Expect = 4.4
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 117 PPSYIARCLEQLVDHLQNGSRVLDIGS 143
P ++L L + V D GS
Sbjct: 103 PVRTFREIAKKLSYILSEDATVTDQGS 129
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II,
alcohol dehydrogenase superf structural genomics; 1.96A
{Novosphingobium aromaticivorans}
Length = 343
Score = 28.0 bits (63), Expect = 4.5
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 198 HAEGGPYDVIF--FGAGTTEVSKTILSQLKPNGRIVAPVG 235
H G +D+++ G + S S +K G +V+ +G
Sbjct: 211 HTAGQGFDLVYDTLGGPVLDAS---FSAVKRFGHVVSCLG 247
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 28.1 bits (62), Expect = 4.8
Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 108 AFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMA 149
+ Y A L L H RVLD+ G G +
Sbjct: 33 LYIGDTRSRTAEYKAWLLGLLRQH--GCHRVLDVACGTGVDS 72
>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for
struc genomics of infectious diseases, PSI, protein
structure INI; HET: MSE NAP; 1.90A {Salmonella enterica
subsp} PDB: 1o89_A 1o8c_A*
Length = 324
Score = 28.1 bits (63), Expect = 4.8
Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 21/104 (20%)
Query: 135 GSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNN-SLKNIKISRPDLLQSKTLEFILKD 193
GS + + GY A + L + I +SR + +S+ LE
Sbjct: 160 GSTAVALLHKLGYQVAA-----VSGRESTHGYLKSLGANRI-LSRDEFAESRPLE----K 209
Query: 194 ARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNV 237
W A D + G +L+Q+ G VA G
Sbjct: 210 QLWAGA----IDTV--GDKVLA---KVLAQMNYGG-CVAACGLA 243
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 27.8 bits (62), Expect = 5.5
Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 125 LEQLVDHLQNGSRVLDIGSGQGYMA 149
L ++ + G R++D+G G G+
Sbjct: 35 LRAMLPEVG-GLRIVDLGCGFGWFC 58
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme,
flexible domains, ligase; 2.01A {Thermus thermophilus}
SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Length = 580
Score = 28.2 bits (64), Expect = 5.5
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 199 AEGGPYDVIFFGAGTTEVSKTILSQL 224
A G D + F AG +V+ T L +
Sbjct: 380 ARPG--DTLLFVAGPRKVAATALGAV 403
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Escherichia coli} SCOP: c.66.1.20
Length = 207
Score = 27.3 bits (61), Expect = 6.1
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 121 IARCLEQLVDHLQNGSRVLDIGSGQG 146
I + + +LQ G R +D+G+G G
Sbjct: 54 ILDSI-VVAPYLQ-GERFIDVGTGPG 77
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 27.4 bits (61), Expect = 6.1
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 128 LVDHLQNGSRVLDIGSGQGYMA 149
+ ++LQ +LDIG G G ++
Sbjct: 24 IHNYLQEDDEILDIGCGSGKIS 45
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex;
HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia
coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A*
1eqr_A*
Length = 585
Score = 27.8 bits (63), Expect = 6.4
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 199 AEGGPYDVIFFGAGTTEVSKTILSQL 224
A+ G D+IFFGA ++ + L
Sbjct: 386 AQDG--DMIFFGADNKKIVADAMGAL 409
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 27.5 bits (61), Expect = 6.6
Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 122 ARCLEQLVDHL--QNGSRVLDIGSGQGYMA 149
R L+ + + D+G G G
Sbjct: 19 TRPARDLLAQVPLERVLNGYDLGCGPGNST 48
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 27.5 bits (61), Expect = 6.7
Identities = 18/128 (14%), Positives = 39/128 (30%), Gaps = 34/128 (26%)
Query: 120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPET------LNNSLKN 173
+A + + H + +LD+ G G L ++ L S
Sbjct: 39 DLAALVRR---HSPKAASLLDVACGTGMHL-----------RHLADSFGTVEGLELSADM 84
Query: 174 IKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF-----FGAGTTE-----VSKTILSQ 223
+ I+R ++ D R + G + + G + + +
Sbjct: 85 LAIAR---RRNPDAVLHHGDMRD-FSLGRRFSAVTCMFSSIGHLAGQAELDAALERFAAH 140
Query: 224 LKPNGRIV 231
+ P+G +V
Sbjct: 141 VLPDGVVV 148
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral
enzyme structure; HET: SFG; 1.90A {Wesselsbron virus}
PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Length = 300
Score = 27.6 bits (61), Expect = 6.9
Identities = 19/96 (19%), Positives = 41/96 (42%), Gaps = 14/96 (14%)
Query: 120 YIARC---LEQLVD--HLQNGSRVLDIGSGQG---YMATAKEWLSSVRQLLLPETLNNSL 171
++R + L + +L+ RVLD+G G+G Y A A++ + SV+ L +
Sbjct: 62 SVSRGAAKIRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKP 121
Query: 172 KNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI 207
+++ ++++ K + P D +
Sbjct: 122 IHMQTLGWNIVKFKDKSNVF------TMPTEPSDTL 151
>1ws6_A Methyltransferase; structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.50A {Thermus
thermophilus} SCOP: c.66.1.46
Length = 171
Score = 27.1 bits (61), Expect = 7.4
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 6/44 (13%)
Query: 195 RWGHAEGGPYDVIF----FGAGTTEVSKTILSQ--LKPNGRIVA 232
A+G + V F + + +L+ ++ G V
Sbjct: 102 PEAKAQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVL 145
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 27.2 bits (60), Expect = 7.6
Identities = 22/89 (24%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 63 YADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIA 122
Y + L +R P RRA F + +V A
Sbjct: 34 YVNLLPVQHKRS--RDPGDSAEMMQARRA--------FLDAGHYQPLRDAIV-------A 76
Query: 123 RCLEQLVDHLQNGSRVLDIGSGQGYMATA 151
+ E+L D + VLDIG G+GY A
Sbjct: 77 QLRERLDD---KATAVLDIGCGEGYYTHA 102
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 27.0 bits (60), Expect = 9.4
Identities = 17/131 (12%), Positives = 39/131 (29%), Gaps = 27/131 (20%)
Query: 125 LEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLN-----NSLKNIKISRP 179
+E+ V++ LD+ G G + + L P+ N S + + +
Sbjct: 28 IEKCVENNLVFDDYLDLACGTGNLT----------ENLCPKFKNTWAVDLSQEMLSEAEN 77
Query: 180 DLLQSK-TLEFILKDARWGHAEGGPYDVIF-----FGAGTTE-----VSKTILSQLKPNG 228
+D + +D+I K + + LK G
Sbjct: 78 KFRSQGLKPRLACQDISNLN-INRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGG 136
Query: 229 RIVAPVGNVWR 239
+ + + ++
Sbjct: 137 VFIFDINSYYK 147
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 26.9 bits (60), Expect = 9.7
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 117 PPSYIARCLEQLVDHLQNGSRVLDIGS 143
P + +E+L +L + D+ S
Sbjct: 74 PINLTLETIERLKPYLTENMLLADLTS 100
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.418
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,714,003
Number of extensions: 347117
Number of successful extensions: 1207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1171
Number of HSP's successfully gapped: 145
Length of query: 364
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 269
Effective length of database: 4,049,298
Effective search space: 1089261162
Effective search space used: 1089261162
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.6 bits)