BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7831
(206 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZYV|A Chain A, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|B Chain B, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|C Chain C, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|D Chain D, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
Length = 1335
Score = 110 bits (275), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 99/181 (54%), Gaps = 18/181 (9%)
Query: 10 KAGKEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRH 69
K E+ F +N K T P L+ ++R V L GTKY C G CG CTVM+
Sbjct: 5 KESDELIFFVNGKKVTERNADP-EVNLLFYLRKVIRLTGTKYGCGGGDCGACTVMISRYD 63
Query: 70 PVTKELLVYSVNACLVYVQMCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPG 129
P++K + +S ACLV + +G ++ T++G+G K H VQ R+A +GTQCG+C+PG
Sbjct: 64 PISKRISHFSATACLVPICSLHGAAVTTVEGIGSTKTRIHPVQERIAKGHGTQCGFCTPG 123
Query: 130 MVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTGYRPILDTFQS 189
MVM+++ + P M + LGGN+CRCTGYRPI+++ +S
Sbjct: 124 MVMSIYTLLRNHPEPSTEQIMET-----------------LGGNLCRCTGYRPIVESAKS 166
Query: 190 F 190
F
Sbjct: 167 F 167
>pdb|1FO4|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1FO4|B Chain B, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1V97|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
Fyx-051 Bound Form
pdb|1V97|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
Fyx-051 Bound Form
pdb|1VDV|A Chain A, Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form
pdb|1VDV|B Chain B, Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form
pdb|3BDJ|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With A Covalently Bound Oxipurinol Inhibitor
pdb|3BDJ|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With A Covalently Bound Oxipurinol Inhibitor
pdb|3AM9|A Chain A, Complex Of Bovine Xanthine Dehydrogenase And Trihydroxy
Fyx-051
pdb|3AM9|B Chain B, Complex Of Bovine Xanthine Dehydrogenase And Trihydroxy
Fyx-051
pdb|3AMZ|A Chain A, Bovine Xanthine Oxidoreductase Urate Bound Form
pdb|3AMZ|B Chain B, Bovine Xanthine Oxidoreductase Urate Bound Form
pdb|3AX7|A Chain A, Bovine Xanthine Oxidase, Protease Cleaved Form
pdb|3AX7|B Chain B, Bovine Xanthine Oxidase, Protease Cleaved Form
pdb|3AX9|A Chain A, Bovine Xanthone Oxidase, Protease Cleaved Form
pdb|3AX9|B Chain B, Bovine Xanthone Oxidase, Protease Cleaved Form
Length = 1332
Score = 103 bits (258), Expect = 5e-23, Method: Composition-based stats.
Identities = 65/178 (36%), Positives = 102/178 (57%), Gaps = 18/178 (10%)
Query: 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTK 73
E+ F +N K V ++ T L+ ++R GL+GTK C EGGCG CTVM+ +
Sbjct: 5 ELVFFVNGK-KVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDRLQD 63
Query: 74 ELLVYSVNACLVYVQMCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMA 133
+++ +S NACL + + ++ T++G+G K H VQ R+A +G+QCG+C+PG+VM+
Sbjct: 64 KIIHFSANACLAPICTLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIVMS 123
Query: 134 MHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTGYRPILDTFQSFA 191
M+ L+ + + ++E A GN+CRCTGYRPIL F++FA
Sbjct: 124 MYT-----------------LLRNQPEPTVEEIEDAFQGNLCRCTGYRPILQGFRTFA 164
>pdb|1N5X|A Chain A, Xanthine Dehydrogenase From Bovine Milk With Inhibitor
Tei- 6720 Bound
pdb|1N5X|B Chain B, Xanthine Dehydrogenase From Bovine Milk With Inhibitor
Tei- 6720 Bound
Length = 1331
Score = 103 bits (258), Expect = 5e-23, Method: Composition-based stats.
Identities = 65/178 (36%), Positives = 102/178 (57%), Gaps = 18/178 (10%)
Query: 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTK 73
E+ F +N K V ++ T L+ ++R GL+GTK C EGGCG CTVM+ +
Sbjct: 4 ELVFFVNGK-KVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDRLQD 62
Query: 74 ELLVYSVNACLVYVQMCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMA 133
+++ +S NACL + + ++ T++G+G K H VQ R+A +G+QCG+C+PG+VM+
Sbjct: 63 KIIHFSANACLAPICTLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIVMS 122
Query: 134 MHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTGYRPILDTFQSFA 191
M+ L+ + + ++E A GN+CRCTGYRPIL F++FA
Sbjct: 123 MYT-----------------LLRNQPEPTVEEIEDAFQGNLCRCTGYRPILQGFRTFA 163
>pdb|1FIQ|A Chain A, Crystal Structure Of Xanthine Oxidase From Bovine Milk
pdb|3B9J|A Chain A, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
pdb|3B9J|I Chain I, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
Length = 219
Score = 103 bits (257), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 102/181 (56%), Gaps = 18/181 (9%)
Query: 11 AGKEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHP 70
E+ F +N K V ++ T L+ ++R GL+GTK C EGGCG CTVM+
Sbjct: 2 TADELVFFVNGK-KVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDR 60
Query: 71 VTKELLVYSVNACLVYVQMCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGM 130
+ +++ +S NACL + + ++ T++G+G K H VQ R+A +G+QCG+C+PG+
Sbjct: 61 LQDKIIHFSANACLAPICTLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGI 120
Query: 131 VMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTGYRPILDTFQSF 190
VM+M+ L+ + + ++E A GN+CRCTGYRPIL F++F
Sbjct: 121 VMSMYT-----------------LLRNQPEPTVEEIEDAFQGNLCRCTGYRPILQGFRTF 163
Query: 191 A 191
A
Sbjct: 164 A 164
>pdb|3ETR|A Chain A, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3ETR|L Chain L, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3NRZ|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NRZ|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NS1|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NS1|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NVV|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVV|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVW|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVW|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVY|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
pdb|3NVY|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
pdb|3NVZ|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
pdb|3NVZ|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
pdb|3SR6|A Chain A, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
pdb|3SR6|J Chain J, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
Length = 164
Score = 103 bits (256), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 102/178 (57%), Gaps = 18/178 (10%)
Query: 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTK 73
E+ F +N K V ++ T L+ ++R GL+GTK C EGGCG CTVM+ +
Sbjct: 4 ELVFFVNGK-KVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDRLQD 62
Query: 74 ELLVYSVNACLVYVQMCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMA 133
+++ +S NACL + + ++ T++G+G K H VQ R+A +G+QCG+C+PG+VM+
Sbjct: 63 KIIHFSANACLAPICTLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIVMS 122
Query: 134 MHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTGYRPILDTFQSFA 191
M+ L+ + + ++E A GN+CRCTGYRPIL F++FA
Sbjct: 123 MYT-----------------LLRNQPEPTVEEIEDAFQGNLCRCTGYRPILQGFRTFA 163
>pdb|3UNA|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nad Bound
pdb|3UNA|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nad Bound
pdb|3UNC|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase To
1.65a Resolution
pdb|3UNC|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase To
1.65a Resolution
pdb|3UNI|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nadh Bound
pdb|3UNI|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nadh Bound
Length = 1332
Score = 103 bits (256), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 102/178 (57%), Gaps = 18/178 (10%)
Query: 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTK 73
E+ F +N K V ++ T L+ ++R GL+GTK C EGGCG CTVM+ +
Sbjct: 5 ELVFFVNGK-KVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDRLQD 63
Query: 74 ELLVYSVNACLVYVQMCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMA 133
+++ +S NACL + + ++ T++G+G K H VQ R+A +G+QCG+C+PG+VM+
Sbjct: 64 KIIHFSANACLAPICTLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIVMS 123
Query: 134 MHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTGYRPILDTFQSFA 191
M+ L+ + + ++E A GN+CRCTGYRPIL F++FA
Sbjct: 124 MYT-----------------LLRNQPEPTVEEIEDAFQGNLCRCTGYRPILQGFRTFA 164
>pdb|3EUB|A Chain A, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|J Chain J, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|S Chain S, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|2 Chain 2, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
Length = 165
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 102/178 (57%), Gaps = 18/178 (10%)
Query: 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTK 73
E+ F +N K V ++ T L+ ++R GL+GTK C EGGCG CTVM+ +
Sbjct: 5 ELVFFVNGK-KVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDRLQD 63
Query: 74 ELLVYSVNACLVYVQMCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMA 133
+++ +S NACL + + ++ T++G+G K H VQ R+A +G+QCG+C+PG+VM+
Sbjct: 64 KIIHFSANACLAPICTLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIVMS 123
Query: 134 MHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTGYRPILDTFQSFA 191
M+ L+ + + ++E A GN+CRCTGYRPIL F++FA
Sbjct: 124 MYT-----------------LLRNQPEPTVEEIEDAFQGNLCRCTGYRPILQGFRTFA 164
>pdb|2E1Q|A Chain A, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|B Chain B, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|C Chain C, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|D Chain D, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
Length = 1333
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 90/158 (56%), Gaps = 17/158 (10%)
Query: 34 TRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMCNGW 93
T L+ ++R GL GTK C EGGCG CTVM+ + +++ +S NACL + +
Sbjct: 24 TTLLAYLRRKLGLSGTKLGCGEGGCGACTVMLSKYDRLQNKIVHFSANACLAPICSLHHV 83
Query: 94 SIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSF 153
++ T++G+G K H VQ R+A +G+QCG+C+PG+VM+M+ P M
Sbjct: 84 AVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIVMSMYTLLRNQPEPTM------- 136
Query: 154 LMEHDYKVGKADVERALGGNICRCTGYRPILDTFQSFA 191
++E A GN+CRCTGYRPIL F++FA
Sbjct: 137 ----------EEIENAFQGNLCRCTGYRPILQGFRTFA 164
>pdb|2CKJ|A Chain A, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|B Chain B, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|C Chain C, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|D Chain D, Human Milk Xanthine Oxidoreductase
Length = 1333
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 90/158 (56%), Gaps = 17/158 (10%)
Query: 34 TRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMCNGW 93
T L+ ++R GL GTK C EGGCG CTVM+ + +++ +S NACL + +
Sbjct: 24 TTLLAYLRRKLGLSGTKLGCGEGGCGACTVMLSKYDRLQNKIVHFSANACLAPICSLHHV 83
Query: 94 SIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSF 153
++ T++G+G K H VQ R+A +G+QCG+C+PG+VM+M+ P M
Sbjct: 84 AVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIVMSMYTLLRNQPEPTM------- 136
Query: 154 LMEHDYKVGKADVERALGGNICRCTGYRPILDTFQSFA 191
++E A GN+CRCTGYRPIL F++FA
Sbjct: 137 ----------EEIENAFQGNLCRCTGYRPILQGFRTFA 164
>pdb|1WYG|A Chain A, Crystal Structure Of A Rat Xanthine Dehydrogenase Triple
Mutant (C535a, C992r And C1324s)
Length = 1331
Score = 102 bits (253), Expect = 2e-22, Method: Composition-based stats.
Identities = 66/180 (36%), Positives = 104/180 (57%), Gaps = 19/180 (10%)
Query: 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTK 73
E+ F +N K V ++ T L+ ++R GL GTK C EGGCG CTVM+ +
Sbjct: 5 ELVFFVNGK-KVVEKNADPETTLLVYLRRKLGLCGTKLGCGEGGCGACTVMISKYDRLQN 63
Query: 74 ELLVYSVNACLVYVQMCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMA 133
+++ +SVNACL + + ++ T++G+G+ + H VQ R+A +G+QCG+C+PG+VM+
Sbjct: 64 KIVHFSVNACLAPICSLHHVAVTTVEGIGNTQK-LHPVQERIARSHGSQCGFCTPGIVMS 122
Query: 134 MHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTGYRPILDTFQSFATD 193
M+ L+ + + ++E A GN+CRCTGYRPIL F++FA D
Sbjct: 123 MYT-----------------LLRNQPEPTVEEIENAFQGNLCRCTGYRPILQGFRTFAKD 165
>pdb|2E3T|A Chain A, Crystal Structure Of Rat Xanthine Oxidoreductase Mutant
(W335a And F336l)
pdb|2E3T|B Chain B, Crystal Structure Of Rat Xanthine Oxidoreductase Mutant
(W335a And F336l)
Length = 1331
Score = 102 bits (253), Expect = 2e-22, Method: Composition-based stats.
Identities = 66/180 (36%), Positives = 104/180 (57%), Gaps = 19/180 (10%)
Query: 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTK 73
E+ F +N K V ++ T L+ ++R GL GTK C EGGCG CTVM+ +
Sbjct: 5 ELVFFVNGK-KVVEKNADPETTLLVYLRRKLGLCGTKLGCGEGGCGACTVMISKYDRLQN 63
Query: 74 ELLVYSVNACLVYVQMCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMA 133
+++ +SVNACL + + ++ T++G+G+ + H VQ R+A +G+QCG+C+PG+VM+
Sbjct: 64 KIVHFSVNACLAPICSLHHVAVTTVEGIGNTQK-LHPVQERIARSHGSQCGFCTPGIVMS 122
Query: 134 MHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTGYRPILDTFQSFATD 193
M+ L+ + + ++E A GN+CRCTGYRPIL F++FA D
Sbjct: 123 MYT-----------------LLRNQPEPTVEEIENAFQGNLCRCTGYRPILQGFRTFAKD 165
>pdb|3AN1|A Chain A, Crystal Structure Of Rat D428a Mutant, Urate Bound Form
pdb|3AN1|B Chain B, Crystal Structure Of Rat D428a Mutant, Urate Bound Form
Length = 1331
Score = 102 bits (253), Expect = 2e-22, Method: Composition-based stats.
Identities = 66/180 (36%), Positives = 104/180 (57%), Gaps = 19/180 (10%)
Query: 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTK 73
E+ F +N K V ++ T L+ ++R GL GTK C EGGCG CTVM+ +
Sbjct: 5 ELVFFVNGK-KVVEKNADPETTLLVYLRRKLGLCGTKLGCGEGGCGACTVMISKYDRLQN 63
Query: 74 ELLVYSVNACLVYVQMCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMA 133
+++ +SVNACL + + ++ T++G+G+ + H VQ R+A +G+QCG+C+PG+VM+
Sbjct: 64 KIVHFSVNACLAPICSLHHVAVTTVEGIGNTQK-LHPVQERIARSHGSQCGFCTPGIVMS 122
Query: 134 MHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTGYRPILDTFQSFATD 193
M+ L+ + + ++E A GN+CRCTGYRPIL F++FA D
Sbjct: 123 MYT-----------------LLRNQPEPTVEEIENAFQGNLCRCTGYRPILQGFRTFAKD 165
>pdb|2W3R|A Chain A, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|C Chain C, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|E Chain E, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|G Chain G, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3S|A Chain A, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|C Chain C, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|E Chain E, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|G Chain G, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W54|A Chain A, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|C Chain C, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|E Chain E, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|G Chain G, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W55|A Chain A, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|C Chain C, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|E Chain E, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|G Chain G, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
Length = 462
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 87/171 (50%), Gaps = 29/171 (16%)
Query: 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTK 73
E+ F LN + V + P + L++++R GL GTK C EG CG CTVM++
Sbjct: 2 EIAFLLNGETRRVRIEDPTQS-LLEWLR-AEGLTGTKEGCNEGDCGACTVMIRDAAGS-- 57
Query: 74 ELLVYSVNACLVYVQMCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMA 133
+VNACL+ + G ++ TI+G+ H VQ + +G+QCG+C+PG +++
Sbjct: 58 ----RAVNACLMMLPQIAGKALRTIEGIAAPDGRLHPVQQAMIDHHGSQCGFCTPGFIVS 113
Query: 134 MHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTGYRPIL 184
M A H + D K D + L GN+CRCTGY PIL
Sbjct: 114 M-------------AAAH----DRDRK----DYDDLLAGNLCRCTGYAPIL 143
>pdb|1JRO|A Chain A, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|C Chain C, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|E Chain E, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|G Chain G, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRP|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|C Chain C, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|E Chain E, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|G Chain G, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
Length = 462
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 84/171 (49%), Gaps = 29/171 (16%)
Query: 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTK 73
E+ F LN + V + P + L++ +R GL GTK C EG CG CTVM++
Sbjct: 2 EIAFLLNGETRRVRIEDPTQS-LLELLR-AEGLTGTKEGCNEGDCGACTVMIRDAAGS-- 57
Query: 74 ELLVYSVNACLVYVQMCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMA 133
+VNACL+ + G ++ TI+G+ H VQ + +G+QCG+C+PG +++
Sbjct: 58 ----RAVNACLMMLPQIAGKALRTIEGIAAPDGRLHPVQQAMIDHHGSQCGFCTPGFIVS 113
Query: 134 MHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTGYRPIL 184
M HD + D + L GN+CRCTGY PIL
Sbjct: 114 MAAA-------------------HDRD--RKDYDDLLAGNLCRCTGYAPIL 143
>pdb|1N5W|A Chain A, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Oxidized Form
pdb|1N5W|D Chain D, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Oxidized Form
pdb|1N60|A Chain A, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Cyanide- Inactivated Form
pdb|1N60|D Chain D, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Cyanide- Inactivated Form
pdb|1N61|A Chain A, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Dithionite Reduced State
pdb|1N61|D Chain D, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Dithionite Reduced State
pdb|1N62|A Chain A, Crystal Structure Of The Mo,cu-co Dehydrogenase (codh), N-
Butylisocyanide-bound State
pdb|1N62|D Chain D, Crystal Structure Of The Mo,cu-co Dehydrogenase (codh), N-
Butylisocyanide-bound State
pdb|1N63|A Chain A, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Carbon Monoxide Reduced State
pdb|1N63|D Chain D, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Carbon Monoxide Reduced State
pdb|1ZXI|A Chain A, Reconstituted Co Dehydrogenase From Oligotropha
Carboxidovorans
pdb|1ZXI|D Chain D, Reconstituted Co Dehydrogenase From Oligotropha
Carboxidovorans
Length = 166
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 74/155 (47%), Gaps = 27/155 (17%)
Query: 34 TRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMCNGW 93
T L+ FIR+ L G C CG CTV +L SV +C ++ NG
Sbjct: 23 TLLIHFIREQQNLTGAHIGCDTSHCGACTV----------DLDGMSVKSCTMFAVQANGA 72
Query: 94 SIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSF 153
SI TI+G+ +Q +M+G QCGYC+PGM+M HR
Sbjct: 73 SITTIEGMAAPDGTLSALQEGFRMMHGLQCGYCTPGMIMRSHR----------------- 115
Query: 154 LMEHDYKVGKADVERALGGNICRCTGYRPILDTFQ 188
L++ + +A++ +GGN+CRCTGY+ I+ Q
Sbjct: 116 LLQENPSPTEAEIRFGIGGNLCRCTGYQNIVKAIQ 150
>pdb|1RM6|C Chain C, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1RM6|F Chain F, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|C Chain C, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|F Chain F, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
Length = 161
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 76/162 (46%), Gaps = 28/162 (17%)
Query: 30 VPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQM 89
VP L+D++R+ GL GTK C G CG CTV+V R + AC
Sbjct: 18 VPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVLVDDRPRL----------ACSTLAHQ 67
Query: 90 CNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMA 149
G + T++ L + K+Q+ GTQCG+C+PGM+MA
Sbjct: 68 VAGKKVETVESLATQGT-LSKLQAAFHEKLGTQCGFCTPGMIMA---------------- 110
Query: 150 MHSFLMEHDYKVGKADVERALGGNICRCTGYRPILDTFQSFA 191
L+ + + +++ AL GN+CRCTGY I+ + ++ A
Sbjct: 111 -SEALLRKNPSPSRDEIKAALAGNLCRCTGYVKIIKSVETAA 151
>pdb|1FFU|A Chain A, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of
The Molybdenum Cofactor
pdb|1FFU|D Chain D, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of
The Molybdenum Cofactor
pdb|1FFV|A Chain A, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava
pdb|1FFV|D Chain D, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava
Length = 163
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 28/158 (17%)
Query: 34 TRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMCNGW 93
T L+ F+R+ L G C CG CTV + R SV +C C+G
Sbjct: 23 TLLIHFLREELNLTGAHIGCETSHCGACTVDIDGR----------SVKSCTHLAVQCDGS 72
Query: 94 SIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSF 153
+ T++GL +K +++ Q G+ H QCG+C+PGM+M + F
Sbjct: 73 EVLTVEGLANK-----------GVLHAVQEGF------YKEHGLQCGFCTPGMLMRAYRF 115
Query: 154 LMEHDYKVGKADVERALGGNICRCTGYRPILDTFQSFA 191
L E+ +A++ + GN+CRCTGY+ I+ Q A
Sbjct: 116 LQENPNPT-EAEIRMGMTGNLCRCTGYQNIVKAVQYAA 152
>pdb|1T3Q|A Chain A, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
pdb|1T3Q|D Chain D, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
Length = 168
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 70/162 (43%), Gaps = 28/162 (17%)
Query: 36 LVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMCNGWSI 95
L D +R+V GL GTK C +G CG CT+++ + +CL G SI
Sbjct: 31 LADALREVVGLTGTKIGCEQGVCGSCTILIDG----------APMRSCLTLAVQAEGCSI 80
Query: 96 YTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLM 155
T++GL + +N Q + H QCG+C+ GM+ S L
Sbjct: 81 ETVEGLSQGEK-----------LNALQDSF------RRHHALQCGFCTAGMLATARSILA 123
Query: 156 EHDYKVGKADVERALGGNICRCTGYRPILDTFQSFATDACDR 197
E+ + +V + GN+CRCTGY I+D A R
Sbjct: 124 ENPAP-SRDEVREVMSGNLCRCTGYETIIDAITDPAVAEAAR 164
>pdb|1SIJ|A Chain A, Crystal Structure Of The Aldehyde Dehydrogenase (A.K.A.
Aor Or Mop) Of Desulfovibrio Gigas Covalently Bound To
[aso3]-
pdb|1VLB|A Chain A, Structure Refinement Of The Aldehyde Oxidoreductase From
Desulfovibrio Gigas At 1.28 A
pdb|3FAH|A Chain A, Glycerol Inhibited Form Of Aldehyde Oxidoreductase From
Desulfovibrio Gigas
pdb|3FC4|A Chain A, Ethylene Glycol Inhibited Form Of Aldehyde Oxidoreductase
From Desulfovibrio Gigas
pdb|3L4P|A Chain A, Crystal Structure Of The Aldehyde Dehydrogenase (A.K.A.
Aor Or Mop) Of Desulfovibrio Gigas Covalently Bound To
[aso3]-
Length = 907
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 31/159 (19%)
Query: 36 LVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQ-MCNGWS 94
L D +R GL G K C +G CG C+V++ + V AC+ ++ + +G
Sbjct: 23 LSDVLRQQLGLTGVKVGCEQGQCGACSVILDGK----------VVRACVTKMKRVADGAQ 72
Query: 95 IYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFL 154
I TI+G+G ++ H +Q L G QCG+CS PG +++ L
Sbjct: 73 ITTIEGVGQPEN-LHPLQKAWVLHGGAQCGFCS----------------PGFIVSAKG-L 114
Query: 155 MEHDYKVGKADVERALGG--NICRCTGYRPILDTFQSFA 191
++ + + DV N CRCTGY+P++D A
Sbjct: 115 LDTNADPSREDVRDWFQKHRNACRCTGYKPLVDAVMDAA 153
>pdb|3HRD|D Chain D, Crystal Structure Of Nicotinate Dehydrogenase
pdb|3HRD|H Chain H, Crystal Structure Of Nicotinate Dehydrogenase
Length = 160
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 67/150 (44%), Gaps = 30/150 (20%)
Query: 35 RLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMCNGWS 94
RL+D +R+ GL K C EG CG CTV+ PVT C + + +
Sbjct: 24 RLLDLLREDFGLTSVKEGCSEGECGACTVIFNG-DPVT---------TCCMLAGQADEST 73
Query: 95 IYTIDGLGDKKHGYHKVQSRLALMNGT-QCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSF 153
I T++G+ + G + + L G QCGYC+PGM++
Sbjct: 74 IITLEGVAE--DGKPSLLQQCFLEAGAVQCGYCTPGMILTAKA----------------- 114
Query: 154 LMEHDYKVGKADVERALGGNICRCTGYRPI 183
L++ + ++ A+ GN+CRCTGY I
Sbjct: 115 LLDKNPDPTDEEITVAMSGNLCRCTGYIKI 144
>pdb|1DGJ|A Chain A, Crystal Structure Of The Aldehyde Oxidoreductase From
Desulfovibrio Desulfuricans Atcc 27774
Length = 907
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 31/160 (19%)
Query: 36 LVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYV-QMCNGWS 94
LVD +R L K C +G CG CTV++ + V AC++ + ++ S
Sbjct: 23 LVDVLRSQLQLTSVKVGCGKGQCGACTVILDGK----------VVRACIIKMSRVAENAS 72
Query: 95 IYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFL 154
+ T++G+G ++ Q + G QCG+C+PG +++ + L
Sbjct: 73 VTTLEGIGAPD-----------CLHPLQHAWIQHGAA------QCGFCTPGFIVSAKA-L 114
Query: 155 MEHDYKVGKADVERALGG--NICRCTGYRPILDTFQSFAT 192
++ + + DV NICRCTGY+P++D A
Sbjct: 115 LDENVAPSREDVRDWFQKHHNICRCTGYKPLVDAVMDAAA 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,370,106
Number of Sequences: 62578
Number of extensions: 245466
Number of successful extensions: 729
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 649
Number of HSP's gapped (non-prelim): 30
length of query: 206
length of database: 14,973,337
effective HSP length: 94
effective length of query: 112
effective length of database: 9,091,005
effective search space: 1018192560
effective search space used: 1018192560
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)