Query psy7831
Match_columns 206
No_of_seqs 175 out of 1154
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 20:00:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7831.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7831hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03193 4hydroxCoAred 4-hydr 100.0 2E-59 4.3E-64 378.6 17.5 147 15-191 2-148 (148)
2 PRK09908 xanthine dehydrogenas 100.0 1.8E-58 4E-63 376.7 18.6 153 10-192 4-157 (159)
3 TIGR03198 pucE xanthine dehydr 100.0 6.4E-58 1.4E-62 371.4 17.7 149 13-192 2-150 (151)
4 COG2080 CoxS Aerobic-type carb 100.0 9.1E-58 2E-62 370.2 17.3 152 13-193 2-153 (156)
5 PRK11433 aldehyde oxidoreducta 100.0 1.4E-55 3.1E-60 375.0 18.6 151 13-193 50-215 (217)
6 TIGR02963 xanthine_xdhA xanthi 100.0 7.8E-53 1.7E-57 393.6 18.2 159 15-192 1-159 (467)
7 KOG0430|consensus 100.0 4.1E-52 8.9E-57 410.5 15.0 169 13-199 1-169 (1257)
8 COG4630 XdhA Xanthine dehydrog 100.0 1.5E-50 3.2E-55 364.9 16.0 166 13-197 7-172 (493)
9 PLN00192 aldehyde oxidase 100.0 4E-50 8.7E-55 411.5 19.3 165 13-194 4-179 (1344)
10 TIGR02969 mam_aldehyde_ox alde 100.0 3.3E-50 7.2E-55 411.9 18.6 163 14-194 2-164 (1330)
11 PRK09800 putative hypoxanthine 100.0 5E-48 1.1E-52 385.7 17.4 150 13-193 1-151 (956)
12 TIGR03311 Se_dep_Molyb_1 selen 100.0 2E-46 4.3E-51 370.9 16.9 148 15-195 1-148 (848)
13 TIGR03313 Se_sel_red_Mo probab 100.0 2.3E-46 4.9E-51 373.8 16.1 146 17-193 1-147 (951)
14 PLN02906 xanthine dehydrogenas 100.0 1.3E-45 2.8E-50 378.0 15.8 145 33-194 1-145 (1319)
15 PF01799 Fer2_2: [2Fe-2S] bind 100.0 6.9E-34 1.5E-38 206.3 7.2 75 97-189 1-75 (75)
16 PRK12386 fumarate reductase ir 99.9 4.8E-25 1E-29 192.2 10.4 152 2-179 9-204 (251)
17 COG0479 FrdB Succinate dehydro 99.9 6.2E-25 1.3E-29 189.4 9.0 158 2-181 7-204 (234)
18 PRK13552 frdB fumarate reducta 99.9 1.6E-23 3.4E-28 181.4 10.3 157 2-179 9-210 (239)
19 PRK05950 sdhB succinate dehydr 99.9 2E-23 4.3E-28 179.4 10.5 156 2-178 4-201 (232)
20 TIGR00384 dhsB succinate dehyd 99.9 1.9E-23 4.1E-28 178.1 10.2 157 2-179 1-198 (220)
21 PRK12575 succinate dehydrogena 99.9 7.4E-23 1.6E-27 176.9 10.8 156 2-179 9-205 (235)
22 PLN00129 succinate dehydrogena 99.9 1.8E-22 4E-27 178.0 9.0 158 2-180 48-249 (276)
23 PRK08640 sdhB succinate dehydr 99.9 3.2E-22 6.9E-27 174.2 10.2 154 2-178 10-212 (249)
24 PRK12576 succinate dehydrogena 99.9 7.9E-22 1.7E-26 174.2 10.9 156 2-180 13-211 (279)
25 PRK12385 fumarate reductase ir 99.9 9E-22 2E-26 170.8 9.9 155 2-178 11-206 (244)
26 PRK12577 succinate dehydrogena 99.8 1.7E-19 3.6E-24 162.5 12.5 155 2-178 7-212 (329)
27 PRK07570 succinate dehydrogena 99.7 1.9E-18 4.2E-23 150.6 7.0 123 2-146 7-182 (250)
28 PF13085 Fer2_3: 2Fe-2S iron-s 99.7 1.4E-16 3.1E-21 123.3 7.8 85 2-104 4-95 (110)
29 PRK06259 succinate dehydrogena 99.6 2.9E-15 6.4E-20 140.4 11.1 161 2-192 8-216 (486)
30 KOG3049|consensus 99.5 6.8E-15 1.5E-19 125.6 2.6 156 2-179 51-253 (288)
31 PF13510 Fer2_4: 2Fe-2S iron-s 98.8 7.4E-09 1.6E-13 76.0 6.2 69 13-98 2-80 (82)
32 cd00207 fer2 2Fe-2S iron-sulfu 98.6 3.4E-08 7.4E-13 70.8 4.4 69 15-87 1-77 (84)
33 PRK12814 putative NADPH-depend 98.6 7.2E-08 1.6E-12 94.0 7.7 150 14-195 3-177 (652)
34 PF00111 Fer2: 2Fe-2S iron-sul 98.5 1.8E-07 3.9E-12 66.6 4.7 49 17-68 1-51 (78)
35 PRK08493 NADH dehydrogenase su 98.5 2.8E-07 6E-12 92.3 7.5 100 15-133 2-106 (819)
36 PRK07569 bidirectional hydroge 98.3 1.2E-06 2.7E-11 75.4 7.1 97 14-132 3-109 (234)
37 PRK10713 2Fe-2S ferredoxin Yfa 98.0 1.3E-05 2.9E-10 58.7 5.9 50 14-68 3-53 (84)
38 TIGR02008 fdx_plant ferredoxin 97.9 2.3E-05 5.1E-10 58.9 5.9 45 19-67 10-55 (97)
39 CHL00134 petF ferredoxin; Vali 97.9 3.1E-05 6.8E-10 58.5 6.0 44 20-67 13-57 (99)
40 PTZ00305 NADH:ubiquinone oxido 97.7 0.00016 3.5E-09 64.8 8.0 102 12-133 66-176 (297)
41 PRK11872 antC anthranilate dio 97.7 8.1E-05 1.8E-09 67.1 5.9 50 15-68 3-56 (340)
42 PRK07860 NADH dehydrogenase su 97.6 0.00014 3E-09 72.8 6.9 101 13-133 3-113 (797)
43 PRK09129 NADH dehydrogenase su 97.6 0.00013 2.7E-09 72.6 6.5 98 14-133 1-108 (776)
44 PLN03136 Ferredoxin; Provision 97.6 0.00015 3.3E-09 59.0 5.8 50 15-68 57-107 (148)
45 PRK09130 NADH dehydrogenase su 97.6 0.00017 3.7E-09 71.2 7.0 99 14-133 1-109 (687)
46 TIGR02160 PA_CoA_Oxy5 phenylac 97.5 0.00036 7.7E-09 62.8 7.2 52 13-68 263-316 (352)
47 TIGR01973 NuoG NADH-quinone ox 97.5 0.00019 4.1E-09 69.5 5.7 96 17-133 1-106 (603)
48 PRK08166 NADH dehydrogenase su 97.4 0.00027 5.8E-09 71.1 6.5 106 14-133 1-113 (847)
49 PTZ00490 Ferredoxin superfamil 97.4 0.00033 7.1E-09 56.8 5.7 81 14-97 35-135 (143)
50 PTZ00038 ferredoxin; Provision 97.3 0.00058 1.3E-08 57.8 5.8 49 14-67 97-147 (191)
51 PRK10684 HCP oxidoreductase, N 97.2 0.0005 1.1E-08 61.6 5.3 51 14-68 248-299 (332)
52 PRK07609 CDP-6-deoxy-delta-3,4 97.2 0.00047 1E-08 61.7 4.8 50 13-68 3-53 (339)
53 COG0633 Fdx Ferredoxin [Energy 97.0 0.0016 3.4E-08 49.5 5.4 48 17-67 7-55 (102)
54 PLN02593 adrenodoxin-like ferr 97.0 0.0013 2.9E-08 51.2 5.1 78 14-95 2-98 (117)
55 PRK05713 hypothetical protein; 96.9 0.0014 3E-08 58.4 5.1 47 16-68 3-50 (312)
56 PRK05464 Na(+)-translocating N 96.7 0.0024 5.3E-08 59.0 5.1 52 13-68 34-88 (409)
57 TIGR02007 fdx_isc ferredoxin, 96.7 0.0033 7.1E-08 48.3 4.8 37 29-67 19-57 (110)
58 COG1034 NuoG NADH dehydrogenas 96.6 0.0037 8.1E-08 62.0 6.0 103 14-133 1-108 (693)
59 TIGR01941 nqrF NADH:ubiquinone 96.5 0.0036 7.8E-08 57.8 5.2 50 13-66 30-81 (405)
60 COG3383 Uncharacterized anaero 96.5 0.0049 1.1E-07 61.6 6.0 95 13-127 4-104 (978)
61 TIGR01372 soxA sarcosine oxida 95.2 0.057 1.2E-06 55.5 7.5 81 11-102 9-98 (985)
62 KOG2282|consensus 92.0 0.48 1E-05 46.1 6.8 104 12-133 30-139 (708)
63 COG1150 HdrC Heterodisulfide r 91.9 0.059 1.3E-06 45.8 0.6 49 118-179 39-87 (195)
64 PRK07440 hypothetical protein; 90.6 1.5 3.2E-05 31.0 6.7 42 12-68 2-43 (70)
65 COG2104 ThiS Sulfur transfer p 89.3 2.3 4.9E-05 30.2 6.8 41 13-68 1-41 (68)
66 PRK08364 sulfur carrier protei 88.6 3.1 6.7E-05 29.2 7.1 42 14-68 4-47 (70)
67 PRK00054 dihydroorotate dehydr 87.7 0.22 4.7E-06 42.7 0.8 26 49-84 213-238 (250)
68 PRK05659 sulfur carrier protei 86.7 2.7 5.9E-05 28.7 5.8 38 16-68 2-39 (66)
69 PRK08053 sulfur carrier protei 85.7 2.6 5.7E-05 29.1 5.3 38 16-68 2-39 (66)
70 COG0247 GlpC Fe-S oxidoreducta 84.8 1.4 3.1E-05 39.6 4.5 52 116-171 7-58 (388)
71 PRK06083 sulfur carrier protei 84.6 5.2 0.00011 29.5 6.6 41 13-68 17-57 (84)
72 TIGR01683 thiS thiamine biosyn 83.7 4.4 9.6E-05 27.7 5.7 37 17-68 1-37 (64)
73 cd06192 DHOD_e_trans_like FAD/ 83.1 0.71 1.5E-05 39.1 1.7 20 49-68 212-231 (243)
74 PRK11274 glcF glycolate oxidas 81.9 1.8 3.9E-05 39.7 4.0 37 118-156 23-61 (407)
75 cd00565 ThiS ThiaminS ubiquiti 80.0 5.8 0.00013 27.1 5.2 37 17-68 2-38 (65)
76 PRK07696 sulfur carrier protei 79.3 9.2 0.0002 26.6 6.1 38 16-68 2-40 (67)
77 COG2871 NqrF Na+-transporting 76.8 3.2 6.9E-05 38.0 3.8 73 13-89 35-119 (410)
78 PF13534 Fer4_17: 4Fe-4S diclu 75.1 1.9 4.2E-05 28.7 1.6 30 120-153 2-31 (61)
79 TIGR03290 CoB_CoM_SS_C CoB--Co 75.0 1.3 2.7E-05 35.3 0.7 17 119-137 3-19 (144)
80 PRK06437 hypothetical protein; 74.3 15 0.00032 25.6 6.0 41 15-68 3-44 (67)
81 PRK05863 sulfur carrier protei 73.7 5.8 0.00013 27.4 3.8 38 16-68 2-39 (65)
82 COG3894 Uncharacterized metal- 70.6 5.5 0.00012 38.9 4.0 75 14-98 3-86 (614)
83 cd06219 DHOD_e_trans_like1 FAD 70.3 2.7 5.7E-05 36.0 1.7 19 49-67 212-230 (248)
84 PRK11168 glpC sn-glycerol-3-ph 68.6 2.9 6.4E-05 38.0 1.7 28 118-147 7-34 (396)
85 KOG3309|consensus 68.4 15 0.00032 30.4 5.5 78 14-96 45-141 (159)
86 PRK05802 hypothetical protein; 67.3 3 6.5E-05 37.6 1.4 21 48-68 287-307 (320)
87 PF10418 DHODB_Fe-S_bind: Iron 66.4 3.7 8.1E-05 26.1 1.4 19 50-68 3-21 (40)
88 cd06218 DHOD_e_trans FAD/NAD b 63.1 4.1 8.9E-05 34.8 1.4 17 50-66 213-229 (246)
89 cd06220 DHOD_e_trans_like2 FAD 62.9 3.8 8.1E-05 34.6 1.2 19 50-68 200-218 (233)
90 TIGR03379 glycerol3P_GlpC glyc 62.1 4.4 9.5E-05 37.1 1.5 27 118-146 5-31 (397)
91 PRK06944 sulfur carrier protei 61.7 12 0.00026 25.3 3.3 37 16-68 2-38 (65)
92 TIGR02911 sulfite_red_B sulfit 60.1 3.7 8E-05 35.6 0.6 18 47-64 223-240 (261)
93 cd01813 UBP_N UBP ubiquitin pr 58.0 16 0.00035 25.8 3.6 28 13-42 1-28 (74)
94 PRK08221 anaerobic sulfite red 54.6 4.8 0.0001 34.9 0.4 17 48-64 226-242 (263)
95 PRK08345 cytochrome-c3 hydroge 54.5 4.7 0.0001 35.5 0.4 20 48-67 246-265 (289)
96 cd01760 RBD Ubiquitin-like dom 52.4 9.7 0.00021 27.2 1.7 26 17-44 5-30 (72)
97 smart00455 RBD Raf-like Ras-bi 49.8 9.7 0.00021 26.9 1.3 26 17-44 5-30 (70)
98 PRK11840 bifunctional sulfur c 49.7 50 0.0011 30.4 6.1 39 16-69 2-40 (326)
99 cd01818 TIAM1_RBD Ubiquitin do 49.6 15 0.00032 27.0 2.2 24 17-42 5-28 (77)
100 PRK06488 sulfur carrier protei 46.8 27 0.00059 23.7 3.2 37 16-68 2-38 (65)
101 PF11470 TUG-UBL1: GLUT4 regul 45.9 23 0.0005 24.9 2.7 25 17-43 2-26 (65)
102 TIGR00273 iron-sulfur cluster- 45.6 11 0.00024 35.7 1.3 29 117-147 292-326 (432)
103 PRK11278 NADH dehydrogenase I 44.5 48 0.001 31.7 5.4 79 108-202 342-430 (448)
104 PF03990 DUF348: Domain of unk 43.6 55 0.0012 20.6 4.0 29 14-46 1-29 (43)
105 PF02196 RBD: Raf-like Ras-bin 43.0 23 0.00051 24.9 2.4 42 17-67 6-47 (71)
106 PRK12775 putative trifunctiona 42.8 20 0.00043 37.5 2.8 21 47-67 211-231 (1006)
107 cd06221 sulfite_reductase_like 42.3 10 0.00022 32.6 0.5 17 48-64 224-240 (253)
108 PRK06222 ferredoxin-NADP(+) re 40.2 18 0.00039 31.7 1.7 21 47-67 211-231 (281)
109 PF13183 Fer4_8: 4Fe-4S diclus 34.5 7.3 0.00016 25.3 -1.3 15 118-134 3-17 (57)
110 COG1453 Predicted oxidoreducta 34.2 20 0.00043 33.7 1.1 21 112-135 287-307 (391)
111 PRK14126 cell division protein 33.9 67 0.0014 23.5 3.7 30 8-38 2-31 (85)
112 TIGR02484 CitB CitB domain pro 32.3 24 0.00052 33.0 1.3 33 118-169 14-46 (372)
113 cd01812 BAG1_N Ubiquitin-like 31.6 96 0.0021 20.7 4.0 27 14-42 2-28 (71)
114 PF13746 Fer4_18: 4Fe-4S diclu 30.9 16 0.00035 25.6 -0.0 27 107-135 39-65 (69)
115 PF15406 PH_6: Pleckstrin homo 30.0 61 0.0013 25.4 3.0 22 6-27 74-95 (112)
116 COG4656 RnfC Predicted NADH:ub 29.2 67 0.0015 31.4 3.8 58 119-189 366-428 (529)
117 PF14452 Multi_ubiq: Multiubiq 28.6 1.3E+02 0.0028 20.7 4.4 26 14-42 2-27 (72)
118 PF10790 DUF2604: Protein of U 28.1 46 0.001 23.8 1.9 23 18-42 2-24 (76)
119 cd01817 RGS12_RBD Ubiquitin do 27.8 42 0.00091 24.3 1.7 43 17-68 5-47 (73)
120 PRK12778 putative bifunctional 27.3 34 0.00074 34.2 1.6 19 49-67 213-231 (752)
121 PRK06549 acetyl-CoA carboxylas 27.2 54 0.0012 26.1 2.4 14 14-27 4-17 (130)
122 PF12800 Fer4_4: 4Fe-4S bindin 26.3 47 0.001 17.1 1.3 14 119-134 3-16 (17)
123 PRK05352 Na(+)-translocating N 23.1 41 0.00089 32.1 1.2 63 117-192 373-442 (448)
124 TIGR00778 ahpD_dom alkylhydrop 22.4 93 0.002 19.5 2.4 33 116-170 14-46 (50)
125 PRK13596 NADH dehydrogenase I 22.1 3.2E+02 0.007 26.0 6.9 71 109-197 335-416 (433)
126 PF02492 cobW: CobW/HypB/UreG, 21.9 1.5E+02 0.0033 23.8 4.1 56 139-194 6-81 (178)
127 PHA00446 hypothetical protein 21.6 26 0.00056 26.0 -0.4 12 1-12 32-43 (89)
128 PF07293 DUF1450: Protein of u 20.7 78 0.0017 23.1 2.0 35 33-68 16-54 (78)
129 PF14453 ThiS-like: ThiS-like 20.4 2.9E+02 0.0064 18.9 4.7 36 16-68 2-37 (57)
130 COG3383 Uncharacterized anaero 20.4 47 0.001 34.3 1.0 45 90-136 164-208 (978)
131 COG0023 SUI1 Translation initi 20.2 96 0.0021 23.9 2.4 26 91-116 38-63 (104)
No 1
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=100.00 E-value=2e-59 Score=378.62 Aligned_cols=147 Identities=35% Similarity=0.720 Sum_probs=142.2
Q ss_pred EEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccccCCCcccccccccchhhhhhhcCCCe
Q psy7831 15 VKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMCNGWS 94 (206)
Q Consensus 15 i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~~~~~g~~ 94 (206)
++|+|||+++++ +++|+++|+|+||++++++|+|.||++|.||||+|+|||+ +|+||++++.+++|++
T Consensus 2 i~~~vNG~~~~~--~~~~~~~Ll~~LR~~lgltg~K~gC~~G~CGACtVlvdg~----------~v~SCl~~~~~~~G~~ 69 (148)
T TIGR03193 2 LRLTVNGRWRED--AVADNMLLVDYLRDTVGLTGTKQGCDGGECGACTVLVDGR----------PRLACSTLAHRVAGRK 69 (148)
T ss_pred EEEEECCEEEEe--ecCCCCcHHHHHHHhcCCCCCCCCCCCCCCCCCEEEECCe----------EeeccHhhHhhcCCCc
Confidence 689999999999 8999999999999999999999999999999999999999 9999999999999999
Q ss_pred EEEEcCCCCCCCCccHHHHHHHHcCCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHhcCCc
Q psy7831 95 IYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNI 174 (206)
Q Consensus 95 I~TvEgL~~~~~~~~~vq~a~~~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al~gnl 174 (206)
|+|||||++. +.+||+|++|++++++|||||| |||+|++++||+++| +|+++||+++|+|||
T Consensus 70 V~TiEgl~~~-~~l~pvq~af~~~~a~QCGfCt----------------PG~vms~~~ll~~~p-~ps~~ei~~al~GnL 131 (148)
T TIGR03193 70 VETVEGLATN-GRLSRLQQAFHERLGTQCGFCT----------------PGMIMAAEALLRRNP-SPSRDEIRAALAGNL 131 (148)
T ss_pred EEEeCCCCCC-CCCCHHHHHHHHcCCCcCCCCC----------------ccHHHHHHHHHHcCC-CCCHHHHHHHHcCCc
Confidence 9999999864 5799999999999999999999 999999999999999 899999999999999
Q ss_pred ccCCCCHHHHHHHHHHH
Q psy7831 175 CRCTGYRPILDTFQSFA 191 (206)
Q Consensus 175 CRCtgy~~i~~a~~~~a 191 (206)
||||||++|++||+.++
T Consensus 132 CRCTGY~~I~~Av~~aa 148 (148)
T TIGR03193 132 CRCTGYVKIIESVEAAA 148 (148)
T ss_pred cCCCCCHHHHHHHHHhC
Confidence 99999999999999874
No 2
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=100.00 E-value=1.8e-58 Score=376.67 Aligned_cols=153 Identities=30% Similarity=0.624 Sum_probs=143.3
Q ss_pred CCCceEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccccCCCcccccccccchhhhhhh
Q psy7831 10 KAGKEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQM 89 (206)
Q Consensus 10 ~~~~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~~~ 89 (206)
++.+.|+|+|||+.+++ +++|+++|||+||+. +++|+|.||++|.||||+|+|||+ +|+||++++.+
T Consensus 4 ~~~~~i~~~vNG~~~~~--~~~~~~~Ll~~LR~~-gltgtK~GC~~G~CGACtVlvdg~----------~v~SCl~~a~~ 70 (159)
T PRK09908 4 SETITIECTINGMPFQL--HAAPGTPLSELLREQ-GLLSVKQGCCVGECGACTVLVDGT----------AIDSCLYLAAW 70 (159)
T ss_pred CCceeEEEEECCEEEEE--ecCCCCcHHHHHHHc-CCCCCCCCcCCCCCCCcEEEECCc----------EeehhHhhHHH
Confidence 33467999999999999 899999999999985 999999999999999999999999 99999999999
Q ss_pred cCCCeEEEEcCCCCCCCCccHHHHHHHHcCCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCC-CCCCHHHHHH
Q psy7831 90 CNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHD-YKVGKADVER 168 (206)
Q Consensus 90 ~~g~~I~TvEgL~~~~~~~~~vq~a~~~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~-~~~~~~ei~~ 168 (206)
++|++|+|||||++. +.+||||+||++++++|||||| |||||++++||++++ .+|+++||++
T Consensus 71 ~~G~~V~TiEGl~~~-~~l~pvQ~Af~~~~a~QCGyCt----------------PG~ims~~aLl~~~~~~~~s~~eI~~ 133 (159)
T PRK09908 71 AEGKEIRTLEGEAKG-GKLSHVQQAYAKSGAVQCGFCT----------------PGLIMATTAMLAKPREKPLTITEIRR 133 (159)
T ss_pred hCCCEEEeecCCCCC-CCCCHHHHHHHHcCCCcCCCCC----------------ccHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 999999999999863 5799999999999999999999 999999999999985 2569999999
Q ss_pred HhcCCcccCCCCHHHHHHHHHHHH
Q psy7831 169 ALGGNICRCTGYRPILDTFQSFAT 192 (206)
Q Consensus 169 al~gnlCRCtgy~~i~~a~~~~a~ 192 (206)
+|+|||||||||++|++||+.+-+
T Consensus 134 al~GNlCRCTGY~~I~~Av~~~~~ 157 (159)
T PRK09908 134 GLAGNLCRCTGYQMIVNTVLDCEK 157 (159)
T ss_pred HHcCCccCCCCCHHHHHHHHHHhh
Confidence 999999999999999999987654
No 3
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=100.00 E-value=6.4e-58 Score=371.43 Aligned_cols=149 Identities=35% Similarity=0.710 Sum_probs=143.5
Q ss_pred ceEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccccCCCcccccccccchhhhhhhcCC
Q psy7831 13 KEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMCNG 92 (206)
Q Consensus 13 ~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~~~~~g 92 (206)
..|+|+|||+.+++ +++|+++|+++||++++++++|.||++|.||||+|+|||+ +|+||++|+.+++|
T Consensus 2 ~~i~f~vNG~~~~~--~~~~~~~Ll~~LR~~~~ltgtK~gC~~G~CGACtVlvdG~----------~v~SCl~~~~~~~G 69 (151)
T TIGR03198 2 EQFRFTVNGQAWEV--AAVPTTRLSDLLRKELQLTGTKVSCGIGRCGACSVLIDGK----------LANACLTMAYQADG 69 (151)
T ss_pred ccEEEEECCEEEEe--ecCCCcHHHHHHHhccCCCCCCCCCCCCcCCccEEEECCc----------EEechHHHHHHhcC
Confidence 35899999999999 8999999999999999999999999999999999999998 99999999999999
Q ss_pred CeEEEEcCCCCCCCCccHHHHHHHHcCCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHhcC
Q psy7831 93 WSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGG 172 (206)
Q Consensus 93 ~~I~TvEgL~~~~~~~~~vq~a~~~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al~g 172 (206)
++|+|||||+. +.+||||++|++++++|||||| |||||++++||+++| +|+++||+++|+|
T Consensus 70 ~~v~TiEgl~~--~~l~pvQ~af~~~~a~QCGfCt----------------pG~im~~~~ll~~~p-~p~~~ei~~al~g 130 (151)
T TIGR03198 70 HEITTIEGIAE--NELDPCQTAFLEEGGFQCGYCT----------------PGMVVALKALFRETP-QPSDEDMEEGLSG 130 (151)
T ss_pred CEEEecCCcCC--CCCCHHHHHHHHcCCCcCCCCC----------------ccHHHHHHHHHHcCC-CCCHHHHHHHHcC
Confidence 99999999974 4699999999999999999999 999999999999999 8999999999999
Q ss_pred CcccCCCCHHHHHHHHHHHH
Q psy7831 173 NICRCTGYRPILDTFQSFAT 192 (206)
Q Consensus 173 nlCRCtgy~~i~~a~~~~a~ 192 (206)
||||||||++|++|+++++.
T Consensus 131 nlCRCtgY~~I~~Av~~~~~ 150 (151)
T TIGR03198 131 NLCRCTGYGGIIRSACRIRR 150 (151)
T ss_pred CCcCCCCCHHHHHHHHHHhc
Confidence 99999999999999999874
No 4
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=100.00 E-value=9.1e-58 Score=370.20 Aligned_cols=152 Identities=38% Similarity=0.699 Sum_probs=147.4
Q ss_pred ceEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccccCCCcccccccccchhhhhhhcCC
Q psy7831 13 KEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMCNG 92 (206)
Q Consensus 13 ~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~~~~~g 92 (206)
+.++|+|||+++++ +++|.++|+|+||+.++++|+|.||+.|.||||||+|||+ +|+||++|+.+++|
T Consensus 2 ~~i~ltvNG~~~~~--~~~p~~~Ll~~LRd~l~ltgtk~GC~~g~CGACtVlvDG~----------~v~SCl~~a~~~~G 69 (156)
T COG2080 2 MPITLTVNGEPVEL--DVDPRTPLLDVLRDELGLTGTKKGCGHGQCGACTVLVDGE----------AVNSCLTLAVQAEG 69 (156)
T ss_pred CcEEEEECCeEEEE--EeCCCChHHHHHHHhcCCCCcCCCCCCccCCceEEEECCe----------EehHHHHHHHHhCC
Confidence 67999999999999 9999999999999999999999999999999999999999 99999999999999
Q ss_pred CeEEEEcCCCCCCCCccHHHHHHHHcCCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHhcC
Q psy7831 93 WSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGG 172 (206)
Q Consensus 93 ~~I~TvEgL~~~~~~~~~vq~a~~~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al~g 172 (206)
++|+|||||+..+..+||+|+||++++++|||||| |||||++++||++++ .|+++||+++|+|
T Consensus 70 ~~ItTiEGl~~~~~~l~~vQ~Af~e~~~~QCGyCt----------------pG~Imsa~~lL~~~~-~ps~~eI~~~lsG 132 (156)
T COG2080 70 AEITTIEGLAKKDGGLHPVQQAFLEHDAFQCGYCT----------------PGQIMSATALLDRNP-APTDEEIREALSG 132 (156)
T ss_pred CeEEEeecccCCCCCcCHHHHHHHHcCCCcCCCCc----------------HHHHHHHHHHHHhCC-CCCHHHHHHHHhc
Confidence 99999999996666789999999999999999999 999999999999999 9999999999999
Q ss_pred CcccCCCCHHHHHHHHHHHHh
Q psy7831 173 NICRCTGYRPILDTFQSFATD 193 (206)
Q Consensus 173 nlCRCtgy~~i~~a~~~~a~~ 193 (206)
|+||||||.+|++||+.++..
T Consensus 133 nlCRCt~Y~~I~~Ai~~aa~~ 153 (156)
T COG2080 133 NLCRCTGYQNIVAAILDAAER 153 (156)
T ss_pred CccccCCHHHHHHHHHHHHHH
Confidence 999999999999999999864
No 5
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=100.00 E-value=1.4e-55 Score=374.95 Aligned_cols=151 Identities=36% Similarity=0.700 Sum_probs=144.5
Q ss_pred ceEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccccCCCcccccccccchhhhhhhcCC
Q psy7831 13 KEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMCNG 92 (206)
Q Consensus 13 ~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~~~~~g 92 (206)
..|+|+|||+++++ +++++++||++||++++++|+|.||++|.||+|+|+|||+ +++||++++.+++|
T Consensus 50 ~~i~~~VNG~~~~~--~v~~~~tLLd~LR~~l~ltGtK~GC~~G~CGACTVlVdG~----------~v~SCl~la~~~~G 117 (217)
T PRK11433 50 SPVTLKVNGKTEQL--EVDTRTTLLDALREHLHLTGTKKGCDHGQCGACTVLVNGR----------RLNACLTLAVMHQG 117 (217)
T ss_pred ceEEEEECCEEEEE--ecCCCCcHHHHHHHhcCCCCCCCCCCCCCcCceEEEECCE----------EeeeeeeehhhcCC
Confidence 56999999999999 8999999999999999999999999999999999999999 99999999999999
Q ss_pred CeEEEEcCCCCCCCCccHHHHHHHHcCCCccccCCCCccccccccccCCCCchHHHHHHHHHHh---------------C
Q psy7831 93 WSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLME---------------H 157 (206)
Q Consensus 93 ~~I~TvEgL~~~~~~~~~vq~a~~~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~---------------~ 157 (206)
++|+|||||++. +.+||+|++|++++++|||||| |||||++++||++ +
T Consensus 118 ~~ItTiEGL~~~-~~lhpvQ~Af~~~~a~QCGyCT----------------PG~imsa~alL~~~~~~~~~~~~~~~~~~ 180 (217)
T PRK11433 118 AEITTIEGLGSP-DNLHPMQAAFVKHDGFQCGYCT----------------PGQICSSVAVLKEIKDGIPSHVTVDLTAA 180 (217)
T ss_pred CEEEEeCCcCCC-CCCCHHHHHHHHcCCCcCCCCC----------------ccHHHHHHHHHHhccccCccccccccccC
Confidence 999999999864 5799999999999999999999 9999999999998 5
Q ss_pred CCCCCHHHHHHHhcCCcccCCCCHHHHHHHHHHHHh
Q psy7831 158 DYKVGKADVERALGGNICRCTGYRPILDTFQSFATD 193 (206)
Q Consensus 158 ~~~~~~~ei~~al~gnlCRCtgy~~i~~a~~~~a~~ 193 (206)
+ .|+++||+++|+|||||||||++|++||++++..
T Consensus 181 p-~pt~~eIrealsGNlCRCtgY~~Iv~Av~~~a~~ 215 (217)
T PRK11433 181 P-ELTADEIRERMSGNICRCGAYSNILEAIEDVAGE 215 (217)
T ss_pred C-CCCHHHHHHHHcCCccCCCCcHHHHHHHHHHHhc
Confidence 6 7999999999999999999999999999999864
No 6
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=100.00 E-value=7.8e-53 Score=393.61 Aligned_cols=159 Identities=40% Similarity=0.732 Sum_probs=146.0
Q ss_pred EEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccccCCCcccccccccchhhhhhhcCCCe
Q psy7831 15 VKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMCNGWS 94 (206)
Q Consensus 15 i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~~~~~g~~ 94 (206)
|+|+|||+.+++. +++|+++|++|||++++++|+|.||++|.||||||+|..++.++ ++.+++|+||++|+.+++|++
T Consensus 1 i~~~~Ng~~~~~~-~~~~~~~ll~~lR~~~~l~g~k~gC~~G~CGaCtv~~~~~~~~~-~~~~~~v~sCl~~~~~~~g~~ 78 (467)
T TIGR02963 1 IRFFLNGETVTLS-DVDPTRTLLDYLREDAGLTGTKEGCAEGDCGACTVVVGELVDGG-KLRYRSVNACIQFLPSLDGKA 78 (467)
T ss_pred CEEEECCEEEEee-cCCCCCCHHHHHHHhcCCCCCCcccCCCCCCceEEEEEecCCCC-cccceEEehhhhhHHhcCCCE
Confidence 4799999999994 69999999999999999999999999999999999994443333 566679999999999999999
Q ss_pred EEEEcCCCCCCCCccHHHHHHHHcCCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHhcCCc
Q psy7831 95 IYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNI 174 (206)
Q Consensus 95 I~TvEgL~~~~~~~~~vq~a~~~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al~gnl 174 (206)
|+|||||++.++.+||||++|+++|++|||||| |||||++++||++++ +|+++||+++|+|||
T Consensus 79 i~TvEgl~~~~~~l~~~q~a~~~~~~~QCG~Ct----------------pG~vm~~~~ll~~~~-~~~~~~i~~~l~gnl 141 (467)
T TIGR02963 79 VVTVEDLRQPDGRLHPVQQAMVECHGSQCGFCT----------------PGFVMSLYALYKNSP-APSRADIEDALQGNL 141 (467)
T ss_pred EEecCCCCCCCCCCCHHHHHHHHcCCCcCCCCc----------------hHHHHHHHHHHhcCC-CCCHHHHHHHhcCCc
Confidence 999999986445799999999999999999999 999999999999999 899999999999999
Q ss_pred ccCCCCHHHHHHHHHHHH
Q psy7831 175 CRCTGYRPILDTFQSFAT 192 (206)
Q Consensus 175 CRCtgy~~i~~a~~~~a~ 192 (206)
||||||++|++|++.++.
T Consensus 142 CRCtgy~~i~~a~~~~~~ 159 (467)
T TIGR02963 142 CRCTGYRPILDAAEAAFD 159 (467)
T ss_pred ccCCCCHHHHHHHHHHHh
Confidence 999999999999966655
No 7
>KOG0430|consensus
Probab=100.00 E-value=4.1e-52 Score=410.54 Aligned_cols=169 Identities=43% Similarity=0.825 Sum_probs=161.3
Q ss_pred ceEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccccCCCcccccccccchhhhhhhcCC
Q psy7831 13 KEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMCNG 92 (206)
Q Consensus 13 ~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~~~~~g 92 (206)
|.+.|.|||+++++. .++|++||+.|||+.++|+|||+||+||+||||+|+|.+++|.. .+.+++|||||+|+.+++|
T Consensus 1 ~~l~F~VNG~~~~~~-~vdP~~TL~~fLR~k~~ltgtKlgC~EGGCGaCtv~ls~~dp~~-~~~~~avNsCLt~l~s~~g 78 (1257)
T KOG0430|consen 1 MELVFAINGKRVEVE-LLPPDLTLNTFLREKLGLTGTKLGCGEGGCGACTVVLSKYDPEL-KVRHWAVNSCLTLLNSVHG 78 (1257)
T ss_pred CceEEEECCEEeeEe-cCCcchhHHHHHHHhcCCcceeeccCCCCccceEEEEeccCCCc-eeEEeehhhhhhhcccccc
Confidence 468999999999997 89999999999999999999999999999999999999999998 8999999999999999999
Q ss_pred CeEEEEcCCCCCCCCccHHHHHHHHcCCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHhcC
Q psy7831 93 WSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGG 172 (206)
Q Consensus 93 ~~I~TvEgL~~~~~~~~~vq~a~~~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al~g 172 (206)
..|+|+||||+...+|||||++++..|++|||||| |||+|+||++|.+.+..||.+||+.+|+|
T Consensus 79 ~~VtT~EGlGn~~~g~HPiq~RlA~~hgsQCGFCt----------------PG~vmsmYalL~n~~~~~T~~eie~a~~G 142 (1257)
T KOG0430|consen 79 LEVTTSEGLGNRRDGYHPIQERLAKMHGSQCGFCT----------------PGFVMSMYALLRNSKNSPTMEEIENAFGG 142 (1257)
T ss_pred eEEEeeecccccccCcCcHHHHHhhccCCcccCCC----------------ccHHHHHHHHHHhCCCCCCHHHHHHhhcc
Confidence 99999999999888999999999999999999999 99999999999888778999999999999
Q ss_pred CcccCCCCHHHHHHHHHHHHhhchhhh
Q psy7831 173 NICRCTGYRPILDTFQSFATDACDRVR 199 (206)
Q Consensus 173 nlCRCtgy~~i~~a~~~~a~~~~~~~~ 199 (206)
|||||||||||+||+++||.+.+-..+
T Consensus 143 NLCRCTGYRPIldA~kSFa~d~~~~~~ 169 (1257)
T KOG0430|consen 143 NLCRCTGYRPILDAMKSFAVDSDICGP 169 (1257)
T ss_pred ceeeecCCchHHHHHhhhccCCCcccc
Confidence 999999999999999999987766544
No 8
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.5e-50 Score=364.85 Aligned_cols=166 Identities=37% Similarity=0.677 Sum_probs=153.0
Q ss_pred ceEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccccCCCcccccccccchhhhhhhcCC
Q psy7831 13 KEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMCNG 92 (206)
Q Consensus 13 ~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~~~~~g 92 (206)
.+|+|.+||+.+.++ +++|..|||||||...+++|+|.||.||.||||||+|.....+ +.+.+++||+|+..+.+++|
T Consensus 7 ~~irf~lN~~~~~l~-~v~P~~TlLd~LR~d~~ltGtKEGCAEGDCGACTVlVgrl~~g-~~l~yeSVNACirfl~sL~G 84 (493)
T COG4630 7 NTIRFLLNGETRVLS-DVPPTTTLLDYLRLDRRLTGTKEGCAEGDCGACTVLVGRLVDG-GSLRYESVNACIRFLGSLDG 84 (493)
T ss_pred ceeEEEecCceEEee-cCCcchHHHHHHHHhcccccccccccCCCcCceEEEEEeecCC-CceeeeehhHHHHHHhhcCC
Confidence 679999999999997 9999999999999889999999999999999999999654332 22888999999999999999
Q ss_pred CeEEEEcCCCCCCCCccHHHHHHHHcCCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHhcC
Q psy7831 93 WSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGG 172 (206)
Q Consensus 93 ~~I~TvEgL~~~~~~~~~vq~a~~~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al~g 172 (206)
++|+|||.|+..++.+|||||+|+++|++|||||| ||||||+|+|+.+++ .|+++.|++||.|
T Consensus 85 ~hvvTvE~L~~~~g~LHpVQqamvd~hGSQCGfCT----------------PGFVmSLyal~~~~~-~P~~a~i~kALqG 147 (493)
T COG4630 85 THVVTVEHLRGQDGTLHPVQQAMVDFHGSQCGFCT----------------PGFVMSLYALWMNSP-TPSRAAIEKALQG 147 (493)
T ss_pred ceEEEehhhcCCCCCcCHHHHHHHhccCCccCCcC----------------chHHHHHHHHHhcCC-CCchhHHHHHhhC
Confidence 99999999998776699999999999999999999 999999999999999 9999999999999
Q ss_pred CcccCCCCHHHHHHHHHHHHhhchh
Q psy7831 173 NICRCTGYRPILDTFQSFATDACDR 197 (206)
Q Consensus 173 nlCRCtgy~~i~~a~~~~a~~~~~~ 197 (206)
||||||||+||++|.+..+......
T Consensus 148 NLCRCTGY~pI~~AA~~~~a~~~~a 172 (493)
T COG4630 148 NLCRCTGYRPIIRAAEAIAALGPAA 172 (493)
T ss_pred CcccccCchHHHHHHHHHhccCCcc
Confidence 9999999999999999877654443
No 9
>PLN00192 aldehyde oxidase
Probab=100.00 E-value=4e-50 Score=411.55 Aligned_cols=165 Identities=39% Similarity=0.803 Sum_probs=153.4
Q ss_pred ceEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccccCCCcccccccccchhhhhhhcCC
Q psy7831 13 KEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMCNG 92 (206)
Q Consensus 13 ~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~~~~~g 92 (206)
..|+|+|||+.+++. +++|+++||+|||++++|+|+|.||++|.||||||+|+.+++.++++..++||||++++.+++|
T Consensus 4 ~~i~~~vNg~~~~~~-~~~p~~~Ll~~LR~~~~ltgtK~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g 82 (1344)
T PLN00192 4 MSLVFAVNGERFELS-SVDPSTTLLEFLRTQTPFKSVKLGCGEGGCGACVVLLSKYDPVLDQVEDFTVSSCLTLLCSVNG 82 (1344)
T ss_pred ceEEEEECCEEEEec-cCCCCCcHHHHHHHhhCCCCcCCCCCCCcCCCcEEEEeeccccccCcCCcEEehHHHHHHHhCC
Confidence 469999999999985 7999999999999999999999999999999999999999888888889999999999999999
Q ss_pred CeEEEEcCCCCCCCCccHHHHHHHHcCCCccccCCCCccccccccccCCCCchHHHHHHHHHHhC-----CC------CC
Q psy7831 93 WSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEH-----DY------KV 161 (206)
Q Consensus 93 ~~I~TvEgL~~~~~~~~~vq~a~~~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~-----~~------~~ 161 (206)
++|+|||||++.++.+||||++|+++|++|||||| |||||++++||+++ +. .+
T Consensus 83 ~~i~TvEgl~~~~~~lhpvq~a~~~~~~~QCGfCt----------------pG~vms~~~ll~~~~~~~~~~p~~~~~~~ 146 (1344)
T PLN00192 83 CSITTSEGLGNSKDGFHPIHKRFAGFHASQCGFCT----------------PGMCISLFSALVNADKTDRPEPPSGFSKL 146 (1344)
T ss_pred CEEEeecCcCCCCCCCCHHHHHHHHcCCCccCCCC----------------hHHHHHHHHHHHhcccccCCCcccccCCC
Confidence 99999999996556799999999999999999999 99999999999663 21 24
Q ss_pred CHHHHHHHhcCCcccCCCCHHHHHHHHHHHHhh
Q psy7831 162 GKADVERALGGNICRCTGYRPILDTFQSFATDA 194 (206)
Q Consensus 162 ~~~ei~~al~gnlCRCtgy~~i~~a~~~~a~~~ 194 (206)
+++||+++|+|||||||||++|+||+++++.+.
T Consensus 147 ~~~~i~~~l~gnlCRCtgY~~i~~a~~~~~~~~ 179 (1344)
T PLN00192 147 TVVEAEKAVSGNLCRCTGYRPIVDACKSFAADV 179 (1344)
T ss_pred CHHHHHHHhcCCceeCCCCHHHHHHHHHHHhhc
Confidence 899999999999999999999999999999874
No 10
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=100.00 E-value=3.3e-50 Score=411.86 Aligned_cols=163 Identities=42% Similarity=0.785 Sum_probs=154.3
Q ss_pred eEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccccCCCcccccccccchhhhhhhcCCC
Q psy7831 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMCNGW 93 (206)
Q Consensus 14 ~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~~~~~g~ 93 (206)
.|+|+|||+.+++. +++|+++||+|||++++|+|+|.||++|.||||||+||++++.++.+..++||||++++.+++|+
T Consensus 2 ~~~~~~Ng~~~~~~-~~~~~~~ll~~LR~~~~l~gtk~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~ 80 (1330)
T TIGR02969 2 ELLFYVNGRKVVEK-NVDPETMLLPYLRKKLRLTGTKYGCGGGGCGACTVMISRYNPSTKSIRHHPVNACLTPICSLYGA 80 (1330)
T ss_pred cEEEEECCEEEEec-cCCCCCcHHHHHHhhcCCCCCCCCcCCCCCCCcEEEECCccccccccCCcEEehhHHHHHHhCCC
Confidence 48899999998543 89999999999999999999999999999999999999998888888889999999999999999
Q ss_pred eEEEEcCCCCCCCCccHHHHHHHHcCCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHhcCC
Q psy7831 94 SIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGN 173 (206)
Q Consensus 94 ~I~TvEgL~~~~~~~~~vq~a~~~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al~gn 173 (206)
+|+|||||++..+.+||||++|+++|++|||||| |||||++++||++++ +|+++||+++|+||
T Consensus 81 ~v~TvEgl~~~~~~l~pvq~a~~~~~~~QCGfCt----------------pG~vm~~~~ll~~~~-~p~~~~i~~~l~gn 143 (1330)
T TIGR02969 81 AVTTVEGIGSTRTRLHPVQERIAKCHGTQCGFCT----------------PGMVMSMYALLRNHP-EPTLDQLTDALGGN 143 (1330)
T ss_pred EEEecCCcCCCCCCCCHHHHHHHHcCCCcCCCCc----------------hHHHHHHHHHHHcCC-CCCHHHHHHHhcCC
Confidence 9999999996445799999999999999999999 999999999999999 89999999999999
Q ss_pred cccCCCCHHHHHHHHHHHHhh
Q psy7831 174 ICRCTGYRPILDTFQSFATDA 194 (206)
Q Consensus 174 lCRCtgy~~i~~a~~~~a~~~ 194 (206)
|||||||++|++|+++++.+.
T Consensus 144 lCRCtgY~~i~~a~~~~~~~~ 164 (1330)
T TIGR02969 144 LCRCTGYRPIIDACKTFCKTS 164 (1330)
T ss_pred cccCCCCHHHHHHHHHHhhcc
Confidence 999999999999999999763
No 11
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=100.00 E-value=5e-48 Score=385.69 Aligned_cols=150 Identities=19% Similarity=0.268 Sum_probs=144.1
Q ss_pred ceEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCccc-CCCCCccceEEEEccccCCCcccccccccchhhhhhhcC
Q psy7831 13 KEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYM-CREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMCN 91 (206)
Q Consensus 13 ~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~g-C~eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~~~~~ 91 (206)
|.|+|+|||+++++ +++|+++||++||+ ++++|+|.+ |++|.||||||+|||+ +++||++++.+++
T Consensus 1 ~~i~~~vNg~~~~~--~~~~~~~l~~~LR~-~~~~~~k~g~c~~g~CGaCtv~~dg~----------~v~sC~~~~~~~~ 67 (956)
T PRK09800 1 MIIHFTLNGAPQEL--TVNPGENVQKLLFN-MGMHSVRNSDDGFGFAGSDAIIFNGN----------IVNASLLIAAQLE 67 (956)
T ss_pred CeEEEEECCEEEEE--ecCCCCCHHHHHHH-CCCCccccCCCCcccCCCCEEEECCe----------EEeHHHHHHHHcC
Confidence 46899999999999 89999999999999 999999998 8999999999999999 9999999999999
Q ss_pred CCeEEEEcCCCCCCCCccHHHHHHHHcCCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHhc
Q psy7831 92 GWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALG 171 (206)
Q Consensus 92 g~~I~TvEgL~~~~~~~~~vq~a~~~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al~ 171 (206)
|++|+|||||+.. +.+||+|++|++++++|||||| |||+|++++||++++ +|+++||+++|+
T Consensus 68 g~~i~Tvegl~~~-~~~~~~q~af~~~~~~QCG~Ct----------------pG~~m~~~~ll~~~~-~p~~~~i~~~l~ 129 (956)
T PRK09800 68 KADIRTAESLGKW-NELSLVQQAMVDVGVVQSGYND----------------PAAALIITDLLDRIA-APTREEIDDALS 129 (956)
T ss_pred CCEEEecCCcCCC-CCCCHHHHHHHHcCCCcCCCCh----------------HHHHHHHHHHHhcCC-CCCHHHHHHHHh
Confidence 9999999999864 5799999999999999999999 999999999999999 999999999999
Q ss_pred CCcccCCCCHHHHHHHHHHHHh
Q psy7831 172 GNICRCTGYRPILDTFQSFATD 193 (206)
Q Consensus 172 gnlCRCtgy~~i~~a~~~~a~~ 193 (206)
|||||||||++|++||+.++..
T Consensus 130 gnlCRCtgy~~i~~av~~~~~~ 151 (956)
T PRK09800 130 GLFSRDAGWQQYYQVIELAVAR 151 (956)
T ss_pred hchhccCCcHHHHHHHHHHHHh
Confidence 9999999999999999988764
No 12
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=100.00 E-value=2e-46 Score=370.93 Aligned_cols=148 Identities=35% Similarity=0.667 Sum_probs=139.6
Q ss_pred EEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccccCCCcccccccccchhhhhhhcCCCe
Q psy7831 15 VKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMCNGWS 94 (206)
Q Consensus 15 i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~~~~~g~~ 94 (206)
++|+|||+ ++ +++|+++||++||++++++|+|.||++|.||||||+|||+ +++||++++.+++|++
T Consensus 1 ~~~~~ng~--~~--~~~~~~~l~~~lr~~~~~~~~k~gc~~g~cgactv~~dg~----------~~~sc~~~~~~~~g~~ 66 (848)
T TIGR03311 1 YEFIVNGR--EV--DVNEEKKLLEFLREDLRLTGVKNGCGEGACGACTVIVNGK----------AVRACRFTTAKLAGKE 66 (848)
T ss_pred CEEEECCE--Ee--eCCCCCcHHHHHHHhcCCCcCCCCCCCCCCCCcEEEECCe----------EEehhhhhHHhcCCCE
Confidence 36999998 45 6789999999999999999999999999999999999999 9999999999999999
Q ss_pred EEEEcCCCCCCCCccHHHHHHHHcCCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHhcCCc
Q psy7831 95 IYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNI 174 (206)
Q Consensus 95 I~TvEgL~~~~~~~~~vq~a~~~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al~gnl 174 (206)
|+|||||++. .+||||++|++++++|||||| |||+|++++||++++ +|++++|+++|+|||
T Consensus 67 i~T~egl~~~--~~~~~q~a~~~~~~~qcG~ct----------------pg~~~~~~~ll~~~~-~p~~~~i~~~l~gnl 127 (848)
T TIGR03311 67 ITTVEGLTER--EKDVYAWAFAKAGAVQCGFCI----------------PGMVISAKALLDKNP-NPTEAEIKKALKGNI 127 (848)
T ss_pred EEecCCCCCC--CCCHHHHHHHHcCCCcCCCCc----------------hhHHHHHHHHHhcCC-CCCHHHHHHHHhcCc
Confidence 9999999863 479999999999999999999 999999999999999 999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHhhc
Q psy7831 175 CRCTGYRPILDTFQSFATDAC 195 (206)
Q Consensus 175 CRCtgy~~i~~a~~~~a~~~~ 195 (206)
||||||++|++||+.++....
T Consensus 128 crctgy~~i~~a~~~~~~~~~ 148 (848)
T TIGR03311 128 CRCTGYVKIIKAVRLAAKAFR 148 (848)
T ss_pred cccCChHHHHHHHHHHHHhhc
Confidence 999999999999998877543
No 13
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=100.00 E-value=2.3e-46 Score=373.79 Aligned_cols=146 Identities=20% Similarity=0.322 Sum_probs=140.0
Q ss_pred EEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcc-cCCCCCccceEEEEccccCCCcccccccccchhhhhhhcCCCeE
Q psy7831 17 FALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKY-MCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMCNGWSI 95 (206)
Q Consensus 17 f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~-gC~eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~~~~~g~~I 95 (206)
|+|||+++++ +++|+++||++||+. +++|+|. +|++|.||||||+|||+ +++||++++.+++|++|
T Consensus 1 ~~~Ng~~~~~--~~~~~~~l~~~LR~~-~l~~~k~~~c~~g~CGaCtv~~dg~----------~v~sC~~~~~~~~g~~i 67 (951)
T TIGR03313 1 FTLNGAPQTL--ECKLGENVQTLLFNM-GMHSVRNSDDGFGFAGSDAILFNGV----------LKNASLLIAAQLEGAEV 67 (951)
T ss_pred CEECCEEEEE--ecCCCCCHHHHHHHC-CCCCCcCCCCCcccCCCCEEEECCe----------EeeHHHHHHHHcCCCEE
Confidence 6899999999 899999999999995 9999999 79999999999999999 99999999999999999
Q ss_pred EEEcCCCCCCCCccHHHHHHHHcCCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHhcCCcc
Q psy7831 96 YTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNIC 175 (206)
Q Consensus 96 ~TvEgL~~~~~~~~~vq~a~~~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al~gnlC 175 (206)
+|||||+.. +.+||+|++|++++++|||||| |||+|++++||++++ +|+++||+++|+||||
T Consensus 68 ~Tiegl~~~-~~~~~~q~af~~~~a~QCG~Ct----------------pG~~~~~~~ll~~~~-~p~~~~i~~~l~gnlc 129 (951)
T TIGR03313 68 RTAESLGQW-NQLSLVQQAMVDVGVVQSGYND----------------PAAALILTDLLDRNT-QPNRAEIDDALSGLFS 129 (951)
T ss_pred EecCcCCCC-CCCCHHHHHHHHcCCCcCCCCh----------------HHHHHHHHHHHhcCC-CCCHHHHHHHHhccee
Confidence 999999864 5799999999999999999999 999999999999999 9999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHh
Q psy7831 176 RCTGYRPILDTFQSFATD 193 (206)
Q Consensus 176 RCtgy~~i~~a~~~~a~~ 193 (206)
|||||++|++||+.++..
T Consensus 130 rctgy~~i~~av~~~~~~ 147 (951)
T TIGR03313 130 RDAGYQQFYQVIELAVKR 147 (951)
T ss_pred ccCCcHHHHHHHHHHHHh
Confidence 999999999999988763
No 14
>PLN02906 xanthine dehydrogenase
Probab=100.00 E-value=1.3e-45 Score=378.02 Aligned_cols=145 Identities=45% Similarity=0.910 Sum_probs=137.2
Q ss_pred CCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccccCCCcccccccccchhhhhhhcCCCeEEEEcCCCCCCCCccHHH
Q psy7831 33 GTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMCNGWSIYTIDGLGDKKHGYHKVQ 112 (206)
Q Consensus 33 ~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~~~~~g~~I~TvEgL~~~~~~~~~vq 112 (206)
+++||+|||+ ++++|+|.||++|.||||||+||++++.++.+.+++||||++++.+++|++|+|||||++..+.+||||
T Consensus 1 ~~~ll~~LR~-~~l~g~k~gC~~g~CGaCtv~~~~~~~~~~~~~~~~v~sC~~~~~~~~g~~i~Tvegl~~~~~~~~~vq 79 (1319)
T PLN02906 1 HQTLLEYLRD-LGLTGTKLGCGEGGCGACTVMVSHYDRKTGKCVHYAVNACLAPLYSVEGMHVITVEGIGNRRDGLHPVQ 79 (1319)
T ss_pred CCcHHHHHHh-CCCCCCCCCcCCCCCCCeEEEECCccccCCccCCeEehhhHHHHHHhCCCEEEecCCCCCCCCCCCHHH
Confidence 4799999998 999999999999999999999999988878888999999999999999999999999997546799999
Q ss_pred HHHHHcCCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHhcCCcccCCCCHHHHHHHHHHHH
Q psy7831 113 SRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTGYRPILDTFQSFAT 192 (206)
Q Consensus 113 ~a~~~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al~gnlCRCtgy~~i~~a~~~~a~ 192 (206)
++|+++|++|||||| |||||++++||++++..|++++|+++|+|||||||||++|++|+++++.
T Consensus 80 ~a~~~~~~~QCG~Ct----------------pG~vm~~~~ll~~~~~~~~~~~i~~~l~gnlCRCtgy~~i~~a~~~~~~ 143 (1319)
T PLN02906 80 EALASMHGSQCGFCT----------------PGFIMSMYALLRSSKTPPTEEQIEECLAGNLCRCTGYRPILDAFRVFAK 143 (1319)
T ss_pred HHHHHcCCCcCCCCc----------------hHHHHHHHHHHHhCCCCCCHHHHHHHhcCCcccCCCCHHHHHHHHHHHh
Confidence 999999999999999 9999999999998843789999999999999999999999999999998
Q ss_pred hh
Q psy7831 193 DA 194 (206)
Q Consensus 193 ~~ 194 (206)
+.
T Consensus 144 ~~ 145 (1319)
T PLN02906 144 TD 145 (1319)
T ss_pred cc
Confidence 85
No 15
>PF01799 Fer2_2: [2Fe-2S] binding domain; InterPro: IPR002888 The [2Fe-2S] binding domain is found in a range of enzymes including dehydrogenases, oxidases and oxidoreductases. The aldehyde oxido-reductase (Mop) from the sulphate reducing anaerobic Gram-negative bacterium Desulfovibrio gigas is a homodimer of 907 amino acid residues subunits and is a member of the xanthine oxidase family. The protein contains a molybdopterin cofactor (Mo-co) and two different [2Fe-2S] centres. It is folded into four domains of which the first two bind the iron sulphur centres and the last two are involved in Mo-co binding. Mo-co is a molybdenum molybdopterin cytosine dinucleotide. Molybdopterin forms a tricyclic system with the pterin bicycle annealed to a pyran ring. The molybdopterin dinucleotide is deeply buried in the protein. The cis-dithiolene group of the pyran ring binds the molybdenum, which is coordinated by three more (oxygen) ligands [].; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 2E3T_A 1WYG_A 3AN1_B 2E1Q_C 2CKJ_A 3B9J_I 3NVY_J 1FO4_B 3NRZ_J 3AM9_A ....
Probab=100.00 E-value=6.9e-34 Score=206.28 Aligned_cols=75 Identities=37% Similarity=0.852 Sum_probs=63.7
Q ss_pred EEcCCCCCCCCccHHHHHHHHcCCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHhcCCccc
Q psy7831 97 TIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICR 176 (206)
Q Consensus 97 TvEgL~~~~~~~~~vq~a~~~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al~gnlCR 176 (206)
|||||++ .++||+||++|++++++|||||| |||||++++||++++ +|+++||+++|+||+||
T Consensus 1 TvEGl~~-~~~~~~iq~af~~~~a~QCGfCt----------------pG~im~~~~ll~~~~-~p~~~ei~~al~gnlCR 62 (75)
T PF01799_consen 1 TVEGLAS-DGELHPIQQAFVEHGAVQCGFCT----------------PGMIMAAYALLRRNP-DPTEEEIREALSGNLCR 62 (75)
T ss_dssp -GGGSSB-TTB--HHHHHHHHTT--SSSSSH----------------HHHHHHHHHHHHHSS-S-CHHHHHHHTTTS--S
T ss_pred CcCcCCC-CCCcCHHHHHHHHhCCCcCCcch----------------HHHHHHHHHHhhccc-chhhHHHHHHHHcCccC
Confidence 8999976 46899999999999999999999 999999999999999 99999999999999999
Q ss_pred CCCCHHHHHHHHH
Q psy7831 177 CTGYRPILDTFQS 189 (206)
Q Consensus 177 Ctgy~~i~~a~~~ 189 (206)
||||++|++||+.
T Consensus 63 CTgY~~I~~Av~~ 75 (75)
T PF01799_consen 63 CTGYRPIVEAVRQ 75 (75)
T ss_dssp SSTSHHHHHHHH-
T ss_pred CCCcHHHHHHHhC
Confidence 9999999999974
No 16
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=99.92 E-value=4.8e-25 Score=192.17 Aligned_cols=152 Identities=18% Similarity=0.335 Sum_probs=119.5
Q ss_pred ccccCCCCCCCceEEEEECCEEEEEeecCCCCCcHHHHHHhhcCC-----CCCcccCCCCCccceEEEEccccCCCcccc
Q psy7831 2 VYREDPLPKAGKEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGL-----KGTKYMCREGGCGVCTVMVKSRHPVTKELL 76 (206)
Q Consensus 2 ~~~~~p~~~~~~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l-----~g~K~gC~eG~CGACtVlVdG~~~~~~~~~ 76 (206)
|+||+|+.+ . | +.|++ ++++++|||++|++ ++. +++|++|++|.||+|+|+|||+
T Consensus 9 I~R~~~~~~---~--~----q~y~v--~~~~~~tvLd~L~~-i~~~~d~~l~~r~~C~~g~CGsCa~~InG~-------- 68 (251)
T PRK12386 9 VWRGDASGG---E--L----QDYTV--EVNEGEVVLDVIHR-LQATQAPDLAVRWNCKAGKCGSCSAEINGR-------- 68 (251)
T ss_pred EEcCCCCCC---c--e----EEEEE--eCCCCCCHHHHHHH-hccccCCCCcccCCCCCCcCCCCEEEECcc--------
Confidence 678887554 1 2 67888 89999999999998 554 5999999999999999999999
Q ss_pred cccccchhhhhhhcCCCeEEEEcCCCCCC-------------CCccHHH---------------------HHHHHcCCCc
Q psy7831 77 VYSVNACLVYVQMCNGWSIYTIDGLGDKK-------------HGYHKVQ---------------------SRLALMNGTQ 122 (206)
Q Consensus 77 ~~~v~sCl~~~~~~~g~~I~TvEgL~~~~-------------~~~~~vq---------------------~a~~~~~~~Q 122 (206)
|++||.+++.++++++++|||||++.+ +.++.++ +......+++
T Consensus 69 --p~laC~t~~~~~~~~~~itiepl~~fpVikDLvVD~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~CI~ 146 (251)
T PRK12386 69 --PRLMCMTRMSTFDEDETVTVTPMRTFPVIRDLVTDVSFNYEKAREIPSFTPPKDLQPGEYRMQQVDVERSQEFRKCIE 146 (251)
T ss_pred --EeccHHhHHHHhCCCCeEEEccCCCCCccccceEEcHHHHHHHHhcCCcccCCCCCccccCCCHHHHHHHhchhhccc
Confidence 999999999999998999999998876 1111111 1222567999
Q ss_pred cccCCCCccccccccc----cCCCCchHHHHHHHHHHhCCCCCCHHHHHHHhc-CCcccCCC
Q psy7831 123 CGYCSPGMVMAMHRTQ----CGYCSPGMVMAMHSFLMEHDYKVGKADVERALG-GNICRCTG 179 (206)
Q Consensus 123 CG~Ct~~~~~~~~~~~----~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al~-gnlCRCtg 179 (206)
||.|+ ++||+.+.. .+|.||..++.++.++.+++ + ..++++.+.. ..+-+|+.
T Consensus 147 CG~C~--s~CPv~~~~~~~~~~f~GP~~~~~a~r~~~D~R-d-~~~rl~~~~~~~gl~~C~~ 204 (251)
T PRK12386 147 CFLCQ--NVCHVVRDHEENKPAFAGPRFLMRIAELEMHPL-D-TADRRAEAQEEHGLGYCNI 204 (251)
T ss_pred CCccc--CcCCcccccCCCcccccCHHHHHHHHHhhcCcc-c-hHHHHHHhhcccCcccCcC
Confidence 99999 999999763 57999999999999998876 3 2455554433 46777764
No 17
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=99.91 E-value=6.2e-25 Score=189.43 Aligned_cols=158 Identities=18% Similarity=0.272 Sum_probs=132.6
Q ss_pred ccccCCCCCCCceEEEEECCEEEEEeecCCCCCcHHHHHHh----hcCCCCCcccCCCCCccceEEEEccccCCCccccc
Q psy7831 2 VYREDPLPKAGKEVKFALNEKFYTVGEDVPVGTRLVDFIRD----VAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLV 77 (206)
Q Consensus 2 ~~~~~p~~~~~~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~----~~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~~ 77 (206)
||||||..+ +... +.|+| +.++++++||.|.. .....+++++|++|+||+|.|+|||+
T Consensus 7 i~R~~p~~~-~p~~------~~yev--~~~~~~~vLdaL~~Ik~e~d~~Lsfr~sCR~gICGSCam~ING~--------- 68 (234)
T COG0479 7 IYRYNPDDD-KPYW------QTYEV--PYDEGMTVLDALLYIKEEQDPTLSFRRSCREGICGSCAMNINGK--------- 68 (234)
T ss_pred EEEECCCCC-Ccce------EEEEe--cCCCCCcHHHHHHHHHHhcCCccchhhhccCCcCCcceeEECCc---------
Confidence 899999998 4444 67889 89999999998853 34667899999999999999999999
Q ss_pred ccccchhhhhhhcCCCeEEEEcCCCCCC-------------CCcc--------------------HHHH--HHHHcCCCc
Q psy7831 78 YSVNACLVYVQMCNGWSIYTIDGLGDKK-------------HGYH--------------------KVQS--RLALMNGTQ 122 (206)
Q Consensus 78 ~~v~sCl~~~~~~~g~~I~TvEgL~~~~-------------~~~~--------------------~vq~--a~~~~~~~Q 122 (206)
|++||.+.+.++.+. ++|||||++.+ +.|+ |-|. ..--..++.
T Consensus 69 -prLAC~t~~~~~~~~-~i~iePL~~fpVIkDLVVD~~~f~~~~~~ikp~~~~~~~~~~~~~~q~pe~~~~~~~~~~CI~ 146 (234)
T COG0479 69 -PRLACKTLMKDLEEG-VITIEPLPNFPVIRDLVVDMEEFYEKLRKIKPYLIRDDEPDPGERLQSPEEREKLDELSECIL 146 (234)
T ss_pred -cccchhchhhhccCC-ceEEEECCCCCceeeeeeccHHHHHhhhccccceecCCcCCCccccCCHHHHHHHHhhhhccc
Confidence 999999999998766 78999999876 0111 2222 222568999
Q ss_pred cccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHhcCC-cccCCCCH
Q psy7831 123 CGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGN-ICRCTGYR 181 (206)
Q Consensus 123 CG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al~gn-lCRCtgy~ 181 (206)
||-|+ ++||+.|....|.||..++.++.++.++++.-+.++++.+..++ +.||+...
T Consensus 147 Cg~C~--s~CP~~~~~~~f~GPa~l~~a~R~~~D~rd~~~~~R~~~~~~~~gv~~C~~~~ 204 (234)
T COG0479 147 CGCCT--AACPSIWWNPDFLGPAALRQAYRFLADSRDEGTAERLKILEDPDGVWRCTTCG 204 (234)
T ss_pred cchhh--hhCCccccccCCcCHHHHHHHHHHhcCCcccchHHHHHhccCCCCEecccccc
Confidence 99999 99999999999999999999999999887677788888887777 99999875
No 18
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=99.90 E-value=1.6e-23 Score=181.38 Aligned_cols=157 Identities=16% Similarity=0.304 Sum_probs=121.2
Q ss_pred ccccCCCC-CCCceEEEEECCEEEEEeecCCCCCcHHHHHHh----hcCCCCCcccCCCCCccceEEEEccccCCCcccc
Q psy7831 2 VYREDPLP-KAGKEVKFALNEKFYTVGEDVPVGTRLVDFIRD----VAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELL 76 (206)
Q Consensus 2 ~~~~~p~~-~~~~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~----~~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~ 76 (206)
|+||||.. +.+... +.|+| ++++++|+||+|+. +.+..+++++|++|.||+|+|+|||+
T Consensus 9 i~R~~p~~~~~~~~~------~~y~v--~~~~~~tvLdaL~~Ik~~~D~sL~fr~sCr~giCGsCam~ING~-------- 72 (239)
T PRK13552 9 IFRYNPQDPGSKPHM------VTYQL--EETPGMTLFIALNRIREEQDPSLQFDFVCRAGICGSCAMVINGR-------- 72 (239)
T ss_pred EEeeCCCCCCCCcce------EEEEe--cCCCCCCHHHHHHHHHhcCCCCeeEeccCCCCCCCCceeEECCe--------
Confidence 78999963 333334 67888 89999999999964 23556899999999999999999999
Q ss_pred cccccchhhhhhhcCCCeEEEEcCCCCCC-------------CCc-cHHH------------------------HHHHHc
Q psy7831 77 VYSVNACLVYVQMCNGWSIYTIDGLGDKK-------------HGY-HKVQ------------------------SRLALM 118 (206)
Q Consensus 77 ~~~v~sCl~~~~~~~g~~I~TvEgL~~~~-------------~~~-~~vq------------------------~a~~~~ 118 (206)
|++||.+.+.++.+. .+|||||.+.+ +.+ +.++ +.....
T Consensus 73 --~~LAC~t~v~~~~~~-~i~iePl~~fpVirDLvVD~~~~~~~~~~~v~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (239)
T PRK13552 73 --PTLACRTLTSDYPDG-VITLMPLPVFKLIGDLSVNTGKWFREMSERVESWIHTDKEFDIHRLEERMEPEEADEIYELD 149 (239)
T ss_pred --EhhhhhccHhhcCCC-cEEEEECCCCCcceeCccccHHHHHHHHHhhcCccccCCCCCCcccccCCCHHHHHHhhchh
Confidence 999999999988533 57999998866 112 1111 112245
Q ss_pred CCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHh--cCCcccCCC
Q psy7831 119 NGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERAL--GGNICRCTG 179 (206)
Q Consensus 119 ~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al--~gnlCRCtg 179 (206)
.+++||.|+ ++||+.+....|.||+.++.++.++.+.++...++++++.+ ..++.+||.
T Consensus 150 ~CI~Cg~C~--saCP~~~~~~~f~GP~~~~~a~r~~~d~rd~~~~~~~~~~l~~~~gi~~C~~ 210 (239)
T PRK13552 150 RCIECGCCV--AACGTKQMREDFVGAVGLNRIARFELDPRDERTDEDFYELIGNDDGVFGCMS 210 (239)
T ss_pred hccccchhH--hhCCCCccCCCccChHHHHHHHHHhhCCCcchhHHHHHHHhccCCCcCCCcC
Confidence 699999999 99999998889999999999999887765455566665554 357888886
No 19
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=99.90 E-value=2e-23 Score=179.38 Aligned_cols=156 Identities=19% Similarity=0.329 Sum_probs=118.7
Q ss_pred ccccCCCCCCCceEEEEECCEEEEEeecCC-CCCcHHHHHHhhc----CCCCCcccCCCCCccceEEEEccccCCCcccc
Q psy7831 2 VYREDPLPKAGKEVKFALNEKFYTVGEDVP-VGTRLVDFIRDVA----GLKGTKYMCREGGCGVCTVMVKSRHPVTKELL 76 (206)
Q Consensus 2 ~~~~~p~~~~~~~i~f~vNG~~~~v~~~~~-p~~tLLd~LR~~~----~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~ 76 (206)
|+||||..+.+... +.+++ +++ +++|||++|++.- +.++++.+|++|.||+|+|.|||+
T Consensus 4 v~r~~~~~~~~~~~------~~~~v--~~~~~~~tvl~~L~~~~~~~~~~l~~~~~c~~g~Cg~C~v~vnG~-------- 67 (232)
T PRK05950 4 IYRYNPDVDANPRM------QTYEV--DVDECGPMVLDALIKIKNEIDPTLTFRRSCREGVCGSDAMNINGK-------- 67 (232)
T ss_pred EEecCCCCCCCcee------EEEEe--CCCCCCCHHHHHHHHhCCccCCcceeeCCCCCCCCCCCEEEECCc--------
Confidence 78999998766555 56788 888 9999999999742 467899999999999999999999
Q ss_pred cccccchhhhhhhcCCCeEEEEcCCCCCC-------------CCccHHH---------------------HHH-HHcCCC
Q psy7831 77 VYSVNACLVYVQMCNGWSIYTIDGLGDKK-------------HGYHKVQ---------------------SRL-ALMNGT 121 (206)
Q Consensus 77 ~~~v~sCl~~~~~~~g~~I~TvEgL~~~~-------------~~~~~vq---------------------~a~-~~~~~~ 121 (206)
+++||.+++..+ |.+++|||||++.+ ++++.++ +++ ....++
T Consensus 68 --~~laC~t~~~~~-~~~~~tiepl~~~~vikDLvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ci 144 (232)
T PRK05950 68 --NGLACITPISDL-KKGKIVIRPLPGLPVIKDLVVDMTQFYAQYRSIKPYLINDTPPPARERLQSPEDREKLDGLYECI 144 (232)
T ss_pred --CccchhChHhHc-CCCeEEEEECCCCCeeeeceeehHHHHHHHHhccCeecCCCCCCchhccCCHHHHHHHHhHHhcc
Confidence 999999999999 66889999998766 1111111 111 245899
Q ss_pred ccccCCCCccccccccccC-CCCchHHHHHHHHHHhCCCCCCHHHHHHHh-cCCcccCC
Q psy7831 122 QCGYCSPGMVMAMHRTQCG-YCSPGMVMAMHSFLMEHDYKVGKADVERAL-GGNICRCT 178 (206)
Q Consensus 122 QCG~Ct~~~~~~~~~~~~~-~~~PG~vm~~~~ll~~~~~~~~~~ei~~al-~gnlCRCt 178 (206)
+||.|+ ++||+.....+ |.||..++.++.++.+.++....++++... ...+.+|+
T Consensus 145 ~Cg~C~--~~CP~~~~~~~~~~gp~~l~~~~r~~~d~rd~~~~~~~~~~~~~~~i~~C~ 201 (232)
T PRK05950 145 LCACCS--TSCPSFWWNPDKFLGPAALLQAYRFIADSRDEATGERLDILDDPFGVFRCH 201 (232)
T ss_pred cccccc--ccCCccccCCCCCCCHHHHHHHHHHhhCCccchhHHHHHHhhcccccccCc
Confidence 999999 99998866554 999999999999887765222333333222 22556665
No 20
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=99.89 E-value=1.9e-23 Score=178.09 Aligned_cols=157 Identities=22% Similarity=0.369 Sum_probs=123.1
Q ss_pred ccccCCCCCCCceEEEEECCEEEEEeecCCCCCcHHHHHHhh----cCCCCCcccCCCCCccceEEEEccccCCCccccc
Q psy7831 2 VYREDPLPKAGKEVKFALNEKFYTVGEDVPVGTRLVDFIRDV----AGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLV 77 (206)
Q Consensus 2 ~~~~~p~~~~~~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~----~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~~ 77 (206)
|+||||..+.+... +.|++ ++++++|||++|++. .+..+++.+|++|.||+|+|.|||+
T Consensus 1 i~R~~~~~~~~~~~------~~~~v--~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~vnG~--------- 63 (220)
T TIGR00384 1 VLRFNPDVDEKPHL------QSYEV--PADEGMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNVNGK--------- 63 (220)
T ss_pred CcCcCCCCCCCcee------EEEEE--eCCCCCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEECCE---------
Confidence 78999998866555 67888 799999999999862 2567899999999999999999998
Q ss_pred ccccchhhhhhhcCCCeEEEEcCCCCCC-------------CCccHHH----------------------HHH-HHcCCC
Q psy7831 78 YSVNACLVYVQMCNGWSIYTIDGLGDKK-------------HGYHKVQ----------------------SRL-ALMNGT 121 (206)
Q Consensus 78 ~~v~sCl~~~~~~~g~~I~TvEgL~~~~-------------~~~~~vq----------------------~a~-~~~~~~ 121 (206)
+++||.+++..+ |..++|||||.+.+ ++++.++ .++ ....++
T Consensus 64 -~~laC~t~v~~~-g~~~~~iepl~~~pvikDLvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ci 141 (220)
T TIGR00384 64 -PVLACKTKVEDL-GQPVMKIEPLPNLPVIKDLVVDMGPFYAKLEAIKPYLIRKSQPEPEGEFLQTPEQREKLDQLSGCI 141 (220)
T ss_pred -EhhhhhChHHHc-CCCcEEEeeCCCCceeeeeeechHHHHHHHHhcCCeecCCCCCCccccccCCHHHHHHHhhhhhcc
Confidence 999999999988 88889999998765 0111111 011 247899
Q ss_pred ccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHh-cCCcccCCC
Q psy7831 122 QCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERAL-GGNICRCTG 179 (206)
Q Consensus 122 QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al-~gnlCRCtg 179 (206)
+||.|. ++||+.+...+|.||..++.++.++.+..+....++++... ..++.+|+.
T Consensus 142 ~CG~C~--~~CP~~~~~~~~~gp~~~~~~~r~~~d~~~~~~~~r~~~~~~~~~~~~C~~ 198 (220)
T TIGR00384 142 LCGCCY--SSCPAFWWNPEFLGPAALTAAYRFLIDSRDHATKDRLEGLNDKNGVWRCTT 198 (220)
T ss_pred cccccc--ccCCCCccCCCCcCHHHHHHHHHHhcCCCccchHHHHHHhhccCCCccCcc
Confidence 999999 99999988889999999999998887765333455555444 467777764
No 21
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=99.89 E-value=7.4e-23 Score=176.88 Aligned_cols=156 Identities=20% Similarity=0.313 Sum_probs=117.3
Q ss_pred ccccCCCCCCCceEEEEECCEEEEEeecCCC-CCcHHHHHHh---hcCCCCCcccCCCCCccceEEEEccccCCCccccc
Q psy7831 2 VYREDPLPKAGKEVKFALNEKFYTVGEDVPV-GTRLVDFIRD---VAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLV 77 (206)
Q Consensus 2 ~~~~~p~~~~~~~i~f~vNG~~~~v~~~~~p-~~tLLd~LR~---~~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~~ 77 (206)
|+||||..+.+... +.|+| ++.+ ++|+||.|.. +.+..+++++|++|.||+|+|+|||+
T Consensus 9 i~R~~~~~~~~~~~------~~y~v--~~~~~~~tvld~L~~ik~~d~~l~fr~sCr~giCGsCa~~iNG~--------- 71 (235)
T PRK12575 9 IYRYDPDDDAAPRM------QRYEI--APRAEDRMLLDVLGRVKAQDETLSYRRSCREGICGSDAMNINGR--------- 71 (235)
T ss_pred EEeeCCCCCCCcee------EEEEe--cCCCCCCcHHHHHHHHHhcCCCeeeeccCCCCCCCCCeeEECCe---------
Confidence 78999988766555 57888 7765 6799998864 34556899999999999999999999
Q ss_pred ccccchhhhhhhcCCCeEEEEcCCCCCC-------------CCccHHHH----------------------HHHHcCCCc
Q psy7831 78 YSVNACLVYVQMCNGWSIYTIDGLGDKK-------------HGYHKVQS----------------------RLALMNGTQ 122 (206)
Q Consensus 78 ~~v~sCl~~~~~~~g~~I~TvEgL~~~~-------------~~~~~vq~----------------------a~~~~~~~Q 122 (206)
+++||.+.+.++.+ .+|||||.+.+ ++++.++. ......+++
T Consensus 72 -~~LaC~t~~~~~~~--~i~iePl~~~pvikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~p~~~~~~~~~~~CI~ 148 (235)
T PRK12575 72 -NGLACLTNMQALPR--EIVLRPLPGLPVVRDLIVDMTDFFNQYHSIRPYLINDTVPPERERLQTPQEREQLDGLYECIL 148 (235)
T ss_pred -EcchhhCcHhHcCC--CEEEeECCCCCccccceecCHHHHHHHHhccCccccCCCCccccccCCHHHHHHHHhhhhCcc
Confidence 99999999998843 37999998765 11111111 112456999
Q ss_pred cccCCCCccccccccc-cCCCCchHHHHHHHHHHhCCCCCCHHHHHHHh-cCCcccCCC
Q psy7831 123 CGYCSPGMVMAMHRTQ-CGYCSPGMVMAMHSFLMEHDYKVGKADVERAL-GGNICRCTG 179 (206)
Q Consensus 123 CG~Ct~~~~~~~~~~~-~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al-~gnlCRCtg 179 (206)
||+|+ ++||+.++. ..|.||..++.++.++.++.+..++++++... ..++.+|+.
T Consensus 149 CG~C~--s~CP~~~~~~~~f~GP~~~~~a~r~~~D~rd~~~~~rl~~l~~~~gl~~C~~ 205 (235)
T PRK12575 149 CACCS--TACPSYWWNPDKFVGPAGLLQAYRFIADSRDDATAARLDDLEDPYRLFRCRT 205 (235)
T ss_pred ccccc--ccccCccccCCCcCCHHHHHHHHHHHhCCCCCCcHHHHHhhhcCCCcccccC
Confidence 99999 999998765 45999999999999998776444555554322 246777763
No 22
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=99.87 E-value=1.8e-22 Score=178.02 Aligned_cols=158 Identities=19% Similarity=0.315 Sum_probs=116.9
Q ss_pred ccccCCCCCCCceEEEEECCEEEEEeecCCC-CCcHHHHHHh---h-cCCCCCcccCCCCCccceEEEEccccCCCcccc
Q psy7831 2 VYREDPLPKAGKEVKFALNEKFYTVGEDVPV-GTRLVDFIRD---V-AGLKGTKYMCREGGCGVCTVMVKSRHPVTKELL 76 (206)
Q Consensus 2 ~~~~~p~~~~~~~i~f~vNG~~~~v~~~~~p-~~tLLd~LR~---~-~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~ 76 (206)
|+||||..+.+... +.|+| ++.+ ++|+||.|+. + .+..+++++|++|.||+|+|+|||+
T Consensus 48 i~R~~p~~~~~~~~------~~y~v--~~~~~~~tVLd~L~~Ik~~~D~sLsfr~sCr~giCGsCam~ING~-------- 111 (276)
T PLN00129 48 IYRWNPDNPGKPHL------QSYKV--DLNDCGPMVLDVLIKIKNEQDPSLTFRRSCREGICGSCAMNIDGK-------- 111 (276)
T ss_pred EEeeCCCCCCCcee------EEEEe--CCCCCCchHHHHHHHHHHcCCCCeEEeccCCCCCCCCCeeEECCc--------
Confidence 67888877655444 67888 7775 8999999865 2 3556899999999999999999999
Q ss_pred cccccchhhhhhhcCCCeEEEEcCCCCCC-------------CCccHHHH------------------------HHHHcC
Q psy7831 77 VYSVNACLVYVQMCNGWSIYTIDGLGDKK-------------HGYHKVQS------------------------RLALMN 119 (206)
Q Consensus 77 ~~~v~sCl~~~~~~~g~~I~TvEgL~~~~-------------~~~~~vq~------------------------a~~~~~ 119 (206)
|+++|.+.+..+.+ ..+|||||.+++ ++++.++. ......
T Consensus 112 --p~LAC~t~v~~~~~-~~i~iePl~~fpVirDLvVD~~~f~~klk~v~p~l~~~~~~~~~~~~~~q~pe~~~~~~~~~~ 188 (276)
T PLN00129 112 --NTLACLTKIDRDES-GPTTITPLPHMFVIKDLVVDMTNFYQQYKSIEPWLKTKKPPEDGQKEHLQSKEDRAKLDGMYE 188 (276)
T ss_pred --ccccccccHhhcCC-CcEEEEECCCCCeeeecccccHHHHHHHHhccccccCCCCCCCCccccCCCHHHHHHHhhhhh
Confidence 99999999988743 346899998876 11111111 011247
Q ss_pred CCccccCCCCcccccccc-ccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHh-cCCcccCCCC
Q psy7831 120 GTQCGYCSPGMVMAMHRT-QCGYCSPGMVMAMHSFLMEHDYKVGKADVERAL-GGNICRCTGY 180 (206)
Q Consensus 120 ~~QCG~Ct~~~~~~~~~~-~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al-~gnlCRCtgy 180 (206)
+++||.|+ ++||+.+. +.+|.||..+..++.++.++++...+++++... ..++.+|+.-
T Consensus 189 CI~CG~C~--saCPv~~~~~~~flGP~~l~~a~R~~~D~RD~~~~erl~~l~~~~gl~~C~~C 249 (276)
T PLN00129 189 CILCACCS--TSCPSYWWNPEKFLGPAALLHAYRWISDSRDEYTKERLEALDDEFKLYRCHTI 249 (276)
T ss_pred Cccccccc--cccCCCcccCcccccHHHHHHHHHhcCCccccchHHHHHHHHhcCCCCcCcCh
Confidence 99999999 99998754 456999999999999987765344556565332 3477777754
No 23
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=99.87 E-value=3.2e-22 Score=174.19 Aligned_cols=154 Identities=12% Similarity=0.297 Sum_probs=115.0
Q ss_pred ccccCCCCCCCceEEEEECCEEEEEeecCCCCCcHHHHHHhh-----------cCCCCCcccCCCCCccceEEEEccccC
Q psy7831 2 VYREDPLPKAGKEVKFALNEKFYTVGEDVPVGTRLVDFIRDV-----------AGLKGTKYMCREGGCGVCTVMVKSRHP 70 (206)
Q Consensus 2 ~~~~~p~~~~~~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~-----------~~l~g~K~gC~eG~CGACtVlVdG~~~ 70 (206)
|+|||| ++.+... +.|+| ++++++|+||.|... ....+++++|++|.||+|+|+|||+
T Consensus 10 i~R~~~-~~~~~~~------q~y~v--~~~~~~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr~giCGsCam~ING~-- 78 (249)
T PRK08640 10 IKRQDG-PDSKPYW------EEFEI--PYRPNMNVISALMEIRRNPVNAKGEKTTPVVWDMNCLEEVCGACSMVINGK-- 78 (249)
T ss_pred EEeeCC-CCCCcee------EEEEe--cCCCCCcHHHHHHHHHhcccccccccCCCeeEecccCCCCCCcCeeEECCc--
Confidence 688998 4444334 67888 889999999998642 2336889999999999999999999
Q ss_pred CCcccccccccchhhhhhhcCCCeEEEEcCCCCCC-------------CCccH---------------------HHH--H
Q psy7831 71 VTKELLVYSVNACLVYVQMCNGWSIYTIDGLGDKK-------------HGYHK---------------------VQS--R 114 (206)
Q Consensus 71 ~~~~~~~~~v~sCl~~~~~~~g~~I~TvEgL~~~~-------------~~~~~---------------------vq~--a 114 (206)
|++||.+.+.++. +.+|||||.+.+ +.++. -+. .
T Consensus 79 --------p~LAC~t~v~~~~--~~i~iePl~~fpVikDLvVD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~ 148 (249)
T PRK08640 79 --------PRQACTALIDQLE--QPIRLEPMSTFPVVRDLQVDRSRMFDNLKRVKAWIPIDGTYDLGPGPRMPEEKRQWA 148 (249)
T ss_pred --------cchhhhChHHHcC--CcEEEEECCCCCccccCcEEChHHHHHHHhhCCccccCCCCCCCcccCCCHHHHHHH
Confidence 9999999998873 347999998876 01111 111 1
Q ss_pred HHHcCCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCC-CCHHHHHHHh-cCCcccCC
Q psy7831 115 LALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYK-VGKADVERAL-GGNICRCT 178 (206)
Q Consensus 115 ~~~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~-~~~~ei~~al-~gnlCRCt 178 (206)
.....+++||.|. ++||+.+...+|.||..+..++.+.....++ ...++++... ..++-+|+
T Consensus 149 ~~~~~CI~CG~C~--saCP~~~~~~~f~GP~~l~ka~r~~~d~~rd~~~~~rl~~l~~~~g~~~C~ 212 (249)
T PRK08640 149 YELSKCMTCGCCL--EACPNVNEKSDFIGPAAISQVRLFNAHPTGEMHKEERLRALMGDGGIADCG 212 (249)
T ss_pred hhhhhccCcCccc--ccCCCCccCCCccChHHHHHHHHHhcCcCcCccHHHHHHHhhcCCCeeCCc
Confidence 2256799999999 9999999888999999999998877665323 2345555442 45566666
No 24
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=99.87 E-value=7.9e-22 Score=174.21 Aligned_cols=156 Identities=21% Similarity=0.258 Sum_probs=119.0
Q ss_pred ccccCCCCCCCceEEEEECCEEEEEeecCCCCCcHHHHHHhh---c-CCCCCcccCCCCCccceEEEEccccCCCccccc
Q psy7831 2 VYREDPLPKAGKEVKFALNEKFYTVGEDVPVGTRLVDFIRDV---A-GLKGTKYMCREGGCGVCTVMVKSRHPVTKELLV 77 (206)
Q Consensus 2 ~~~~~p~~~~~~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~---~-~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~~ 77 (206)
|+||||..+ ..+ +.|++ ++++++||||+|+.. . ...+++.+|++|.||+|+|.|||+
T Consensus 13 i~R~~~~~~--~~~------~~~~v--~~~~~~tvLd~L~~i~~~~d~tl~~~~~C~~G~CgsC~v~ING~--------- 73 (279)
T PRK12576 13 VKRYDPEKG--SWW------QEYKV--KVDRFTQVTEALRRIKEEQDPTLSYRASCHMAVCGSCGMKINGE--------- 73 (279)
T ss_pred EEecCCCCC--CeE------EEEEE--ecCCCCHHHHHHHHhCCccCCCceecCCCCCCCCCCCEEEECCc---------
Confidence 688888743 222 56788 899999999999872 2 345789999999999999999999
Q ss_pred ccccchhhhhhhc--CCCeEEEEcCCCCCC-------------CCccHHH------------------------HHHHHc
Q psy7831 78 YSVNACLVYVQMC--NGWSIYTIDGLGDKK-------------HGYHKVQ------------------------SRLALM 118 (206)
Q Consensus 78 ~~v~sCl~~~~~~--~g~~I~TvEgL~~~~-------------~~~~~vq------------------------~a~~~~ 118 (206)
+++||.+++.++ ++++++|||||.+.+ +++..++ +.....
T Consensus 74 -~~laC~t~v~~~~~~~~~~~tiePl~~~~vikDLvvD~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~ 152 (279)
T PRK12576 74 -PRLACKTLVLDVAKKYNSVITIEPMDYFKVVKDLIVDFDEFYERMFKVKPRLYRAKEVLEGKAEHRLKPEDQKELWKFA 152 (279)
T ss_pred -EeccccCcHHHhhcCCCCcEEEEECCCCceeecceechHHHHHHHHhccceeccCccCCCCccccccCHHHHHHhhcch
Confidence 999999999998 356789999998766 0111110 011246
Q ss_pred CCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHhcCCcccCCCC
Q psy7831 119 NGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTGY 180 (206)
Q Consensus 119 ~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al~gnlCRCtgy 180 (206)
.+++||.|+ ++||+.+...+|.||..++.++.++.+..+....+++. .+..++-+|+.-
T Consensus 153 ~CI~CG~C~--~~CP~~~~~~~flgP~~l~~a~r~~~d~rd~~~~~rl~-~~~~~i~~C~~C 211 (279)
T PRK12576 153 QCIWCGLCV--SACPVVAIDPEFLGPAAHAKGYRFLADPRDTITEERMK-ILIDSSWRCTYC 211 (279)
T ss_pred hCcccCccc--ccCCCccccCCcCCHHHHHHHHHHhcCccccchHHHHH-HHcCcCCcccCc
Confidence 899999999 99999999999999999999999887765333444443 446666777753
No 25
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=99.86 E-value=9e-22 Score=170.81 Aligned_cols=155 Identities=17% Similarity=0.323 Sum_probs=116.5
Q ss_pred ccccCCCCCCCceEEEEECCEEEEEeecCCCCCcHHHHHHh---hc-CCCCCcccCCCCCccceEEEEccccCCCccccc
Q psy7831 2 VYREDPLPKAGKEVKFALNEKFYTVGEDVPVGTRLVDFIRD---VA-GLKGTKYMCREGGCGVCTVMVKSRHPVTKELLV 77 (206)
Q Consensus 2 ~~~~~p~~~~~~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~---~~-~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~~ 77 (206)
|+||||..+.+..+ +.|++ ++++++|||++|+. ++ ...+++.+|++|.||+|+|+|||+
T Consensus 11 i~R~~~~~~~~~~~------~~~~v--~~~~~~tvl~~L~~ik~~~d~~l~fr~~C~~giCGsC~v~InG~--------- 73 (244)
T PRK12385 11 VLRYNPEVDTEPHS------QTYEV--PYDETTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNV--------- 73 (244)
T ss_pred EEeeCCCCCCCcee------EEEEe--eCCCCCcHHHHHHHHHHhcCCCceeccCCCCCcCCCCcceECcc---------
Confidence 68999987766555 67888 88999999999943 33 334899999999999999999999
Q ss_pred ccccchhhhhhhcCCCeEEEEcCCCCCC-------------CCccHHH---------------------H-HH-HHcCCC
Q psy7831 78 YSVNACLVYVQMCNGWSIYTIDGLGDKK-------------HGYHKVQ---------------------S-RL-ALMNGT 121 (206)
Q Consensus 78 ~~v~sCl~~~~~~~g~~I~TvEgL~~~~-------------~~~~~vq---------------------~-a~-~~~~~~ 121 (206)
++++|.+++..+.+. +|||||.+.+ ++++.++ . ++ ....++
T Consensus 74 -~~laC~t~~~~~~~~--~~iePl~~fpvikDLvvD~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CI 150 (244)
T PRK12385 74 -PKLACKTFLRDYTGG--MKVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNDRTPDDGPNKQTPAQMAKYHQFSGCI 150 (244)
T ss_pred -ChhhHhhHHHHcCCC--eEEeeCCCCCeeeeCeeecHHHHHHHHHhcCeeeCCCCCCCcccccCCHHHHHHHHHHHhcC
Confidence 999999999987543 7999998766 0111111 1 11 245899
Q ss_pred ccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHH-hcCCcccCC
Q psy7831 122 QCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERA-LGGNICRCT 178 (206)
Q Consensus 122 QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~a-l~gnlCRCt 178 (206)
.||.|. ++||+.+...+|.||..+..++.++.+.++...+++++.. ...++.+|+
T Consensus 151 ~Cg~C~--saCP~~~~~~~y~GP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~gl~~C~ 206 (244)
T PRK12385 151 NCGLCY--AACPQFGLNPEFIGPAAITLAHRYNLDSRDHGKKERMKQLNGQNGVWSCT 206 (244)
T ss_pred cCcccc--CcCcCcccCCCCCCHHHHHHHHHHhhcCCccchHHHHHhhcccchhhhCc
Confidence 999999 9999999999999999999999988766533233333322 235665665
No 26
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=99.81 E-value=1.7e-19 Score=162.54 Aligned_cols=155 Identities=20% Similarity=0.329 Sum_probs=114.3
Q ss_pred ccccCCCCCCCceEEEEECCEEEEEeecCCCCCcHHHHHHhh---c-CCCCCcccCCCCCccceEEEEccccCCCccccc
Q psy7831 2 VYREDPLPKAGKEVKFALNEKFYTVGEDVPVGTRLVDFIRDV---A-GLKGTKYMCREGGCGVCTVMVKSRHPVTKELLV 77 (206)
Q Consensus 2 ~~~~~p~~~~~~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~---~-~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~~ 77 (206)
|+||||.. ...+ +.|++ ++++++|+||+|+.. . +...++.+|+.|.||+|+|.|||+
T Consensus 7 i~R~~~~~--~p~~------~~~~v--~~~~~~tvL~~l~~i~~~~d~tL~~~~~c~~~~Cg~C~v~inG~--------- 67 (329)
T PRK12577 7 ILRQKQNS--APYV------QTYTL--EVEPGNTILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRINGR--------- 67 (329)
T ss_pred EEeeCCCC--CCeE------EEEEE--ECCCCChHHHHHHHhCCcCCCCcEEcCCCCCCCCCCCEEEECCe---------
Confidence 68999864 2233 67888 899999999999863 2 234589999999999999999999
Q ss_pred ccccchhhhhhh-cC--------CCeEEEEcCCCCCC-------------CCccHH---------------------HHH
Q psy7831 78 YSVNACLVYVQM-CN--------GWSIYTIDGLGDKK-------------HGYHKV---------------------QSR 114 (206)
Q Consensus 78 ~~v~sCl~~~~~-~~--------g~~I~TvEgL~~~~-------------~~~~~v---------------------q~a 114 (206)
+++||.+++.. ++ +...+|||||++.+ +.++.+ +.+
T Consensus 68 -~~laC~t~v~~~~~~~~~~~~~~~~~i~iePl~~~pvikDLvVD~~~~~~k~~~v~p~~~~~~~~~~~~e~~~~p~~~~ 146 (329)
T PRK12577 68 -SALACKENVGSELARLSDSNSGAIPEITIAPLGNMPVIKDLVVDMSSFWQNLEAVDPYVSTAARQVPEREFLQTPEERS 146 (329)
T ss_pred -eecCcccchhhhhccccccccCCCCeEEEEECCCCCccccceeccHHHHHHHHhccCccccCCCCCCcccccCCHHHHH
Confidence 99999999976 21 23568999998876 011111 111
Q ss_pred HH--HcCCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHH--hcCCcccCC
Q psy7831 115 LA--LMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERA--LGGNICRCT 178 (206)
Q Consensus 115 ~~--~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~a--l~gnlCRCt 178 (206)
.. ...+++||.|+ ++||+.+...+|.||..++.++.++.+.++..+++.++.. ...++.+||
T Consensus 147 ~~~~~~~Ci~CG~C~--s~CP~~~~~~~f~GP~~~~~a~r~~~d~rd~~~~~~l~~~~~~~~giw~C~ 212 (329)
T PRK12577 147 KLDQTGNCILCGACY--SECNAREVNPEFVGPHALAKAQRMVADSRDTATEQRLELYNQGTAGVWGCT 212 (329)
T ss_pred HHHHhhhCcccCccc--ccCCCCCcCcCcCCHHHHHHHHHHhhCCcchhHHHHHHHHhcCCCccccCc
Confidence 11 35699999999 9999999999999999999999999877633334444322 234567776
No 27
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=99.75 E-value=1.9e-18 Score=150.63 Aligned_cols=123 Identities=15% Similarity=0.326 Sum_probs=92.5
Q ss_pred ccccCCCCCCCceEEEEECCEEEEEeec-CCCCCcHHHHHHhh---c-----CCCCCcccCCCCCccceEEEEccccCCC
Q psy7831 2 VYREDPLPKAGKEVKFALNEKFYTVGED-VPVGTRLVDFIRDV---A-----GLKGTKYMCREGGCGVCTVMVKSRHPVT 72 (206)
Q Consensus 2 ~~~~~p~~~~~~~i~f~vNG~~~~v~~~-~~p~~tLLd~LR~~---~-----~l~g~K~gC~eG~CGACtVlVdG~~~~~ 72 (206)
|+||+|. +.+... +.|+| + +++++|+|++|... + ...+++++|++|.||+|+|+|||+
T Consensus 7 i~R~~~~-~~~~~~------q~y~v--~~~~~~~tvLd~L~~Ik~~~~~~~~~~l~fr~sCr~~iCGsCam~ING~---- 73 (250)
T PRK07570 7 IWRQKGP-DDKGKF------ETYEV--DDISPDMSFLEMLDVLNEQLIEKGEEPVAFDHDCREGICGMCGLVINGR---- 73 (250)
T ss_pred EEecCCC-CCCcee------EEEEe--cCCCCCCcHHHHHHHHHHHhhccCCCCeeEeccccCCcCCcceeEECCc----
Confidence 7899963 333333 67888 7 78999999998642 1 236899999999999999999999
Q ss_pred ccccccc------ccchhhhhhhcCCCeEEEEcCCC--CCC-------C--CccHHHH----------------------
Q psy7831 73 KELLVYS------VNACLVYVQMCNGWSIYTIDGLG--DKK-------H--GYHKVQS---------------------- 113 (206)
Q Consensus 73 ~~~~~~~------v~sCl~~~~~~~g~~I~TvEgL~--~~~-------~--~~~~vq~---------------------- 113 (206)
| ++||.+.+..+.+.+.+|||||. +.+ + .+..+++
T Consensus 74 ------p~~~~~~~LAC~t~~~~~~~~~~i~iePl~~~~fpvikDLvVD~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~ 147 (250)
T PRK07570 74 ------PHGPDRGTTTCQLHMRSFKDGDTITIEPWRAAAFPVIKDLVVDRSALDRIIQAGGYVSVNTGGAPDANAIPVPK 147 (250)
T ss_pred ------cCCCCcccchhhhhhhhcCCCCeEEEEECCCCCCCeeeeceeecHHHHHHHhcCCeEecCCCCCCCccccCCCH
Confidence 8 89999999888655678999997 444 0 0100000
Q ss_pred -----HHHHcCCCccccCCCCccccccccccCCCCchH
Q psy7831 114 -----RLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGM 146 (206)
Q Consensus 114 -----a~~~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~ 146 (206)
......+++||-|. ++||+.+. ..|.||..
T Consensus 148 ~~~~~~~~~~~CI~CG~C~--saCP~~~~-~~f~Gp~~ 182 (250)
T PRK07570 148 EDADRAFDAAACIGCGACV--AACPNGSA-MLFTGAKV 182 (250)
T ss_pred HHHHhhhCccccCCCcccc--cccCCccc-ccccchhh
Confidence 12245699999999 99999984 57999965
No 28
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=99.67 E-value=1.4e-16 Score=123.35 Aligned_cols=85 Identities=26% Similarity=0.400 Sum_probs=66.2
Q ss_pred ccccCCCCCC-CceEEEEECCEEEEEeecCCCCCcHHHHHHh---h-cCCCCCcccCCCCCccceEEEEccccCCCcccc
Q psy7831 2 VYREDPLPKA-GKEVKFALNEKFYTVGEDVPVGTRLVDFIRD---V-AGLKGTKYMCREGGCGVCTVMVKSRHPVTKELL 76 (206)
Q Consensus 2 ~~~~~p~~~~-~~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~---~-~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~ 76 (206)
|+||+|..+. +... +.|++ ++.+++|+||+|.. + .+..+++++|++|.||+|+|+|||+
T Consensus 4 I~R~~~~~~~~~~~~------~~y~v--~~~~~~tVLd~L~~Ik~~~D~sLafr~sCr~giCGsCam~ING~-------- 67 (110)
T PF13085_consen 4 IFRFDPESDEGEPYY------QEYEV--PVEPGMTVLDALNYIKEEQDPSLAFRYSCRSGICGSCAMRINGR-------- 67 (110)
T ss_dssp EEE--TTSTTSS-EE------EEEEE--EGGSTSBHHHHHHHHHHHT-TT--B--SSSSSSSSTTEEEETTE--------
T ss_pred EEEcCCCCCCCCCeE------EEEEe--cCCCCCcHHHHHHHHHhccCCCeEEEecCCCCCCCCCEEEECCc--------
Confidence 7999997765 4444 67888 88899999998854 3 4667899999999999999999999
Q ss_pred cccccchhhhhhhcCCC--eEEEEcCCCCC
Q psy7831 77 VYSVNACLVYVQMCNGW--SIYTIDGLGDK 104 (206)
Q Consensus 77 ~~~v~sCl~~~~~~~g~--~I~TvEgL~~~ 104 (206)
+++||.+++..+.+. ..+|||||++.
T Consensus 68 --~~LAC~t~v~~~~~~~~~~i~IePL~~f 95 (110)
T PF13085_consen 68 --PRLACKTQVDDLIEKFGNVITIEPLPNF 95 (110)
T ss_dssp --EEEGGGSBGGGCTTSETBEEEEEESTTS
T ss_pred --eecceeeEchhccCCCcceEEEEECCCC
Confidence 999999999998765 37899999875
No 29
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=99.61 E-value=2.9e-15 Score=140.36 Aligned_cols=161 Identities=22% Similarity=0.387 Sum_probs=116.1
Q ss_pred ccccCCCCCCCceEEEEECCEEEEEeecCCCCCcHHHHHHhhc----CCCCCcccCCCCCccceEEEEccccCCCccccc
Q psy7831 2 VYREDPLPKAGKEVKFALNEKFYTVGEDVPVGTRLVDFIRDVA----GLKGTKYMCREGGCGVCTVMVKSRHPVTKELLV 77 (206)
Q Consensus 2 ~~~~~p~~~~~~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~----~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~~ 77 (206)
|+||||..+ ...+ +++++ ++++++||||+|++.. .-..++++|+.|.||+|+|.|||+
T Consensus 8 i~r~~~~~~-~~~~------~~~~v--~~~~~~tvl~al~~~~~~~~~~l~~~~~C~~g~Cg~C~v~v~G~--------- 69 (486)
T PRK06259 8 VKRFDPEKD-EPHF------ESYEV--PVKEGMTVLDALEYINKTYDANIAFRSSCRAGQCGSCAVTINGE--------- 69 (486)
T ss_pred EEecCCCCC-Ccee------EEEEE--eCCCCChHHHHHHHhchhcCCCceecCCCCCCCCCCCEEEECCe---------
Confidence 789999988 4444 67888 8999999999999631 223569999999999999999998
Q ss_pred ccccchhhhhhhcCCCeEEEEcCCCCCC---CC-------ccH--------------------HHHHHHHcCCCccccCC
Q psy7831 78 YSVNACLVYVQMCNGWSIYTIDGLGDKK---HG-------YHK--------------------VQSRLALMNGTQCGYCS 127 (206)
Q Consensus 78 ~~v~sCl~~~~~~~g~~I~TvEgL~~~~---~~-------~~~--------------------vq~a~~~~~~~QCG~Ct 127 (206)
++++|.+++.+ | .|||++. .+ +. ++. +++......+++||.|+
T Consensus 70 -~~laC~~~~~~--~---~~i~~~~-~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ci~CG~C~ 142 (486)
T PRK06259 70 -PVLACKTEVED--G---MIIEPLD-FPVIKDLIVDREPYYKKLKSLRNYLQRKNEKITYPEDIEDIKKLRGCIECLSCV 142 (486)
T ss_pred -EecccccCCCC--C---CEEEecC-CcchhccccccHHHHHHHHhhcCCCCCCccCCCCHHHHHHHhCchhcccCcccc
Confidence 89999999863 4 5666664 22 00 011 11111135799999999
Q ss_pred CCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHhcCCcccCCC-------------C-HHHHHHHHHHHH
Q psy7831 128 PGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTG-------------Y-RPILDTFQSFAT 192 (206)
Q Consensus 128 ~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al~gnlCRCtg-------------y-~~i~~a~~~~a~ 192 (206)
.+||+.+. .+|.||..++.++.+..+.+ + ..+++.+.++..+.+|+. + ..++.+.|....
T Consensus 143 --~~CP~~~~-~~~~gp~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~C~~C~~C~~~CP~gi~~~~~~i~~~R~~~~ 216 (486)
T PRK06259 143 --STCPARKV-SDYPGPTFMRQLARFAFDPR-D-EGDREKEAFDEGLYNCTTCGKCVEVCPKEIDIPGKAIEKLRALAF 216 (486)
T ss_pred --ccCCCCcc-ccCcCHHHHHHHHHHhhCCc-c-hhhHHHHHhcCCCcCCCCcCcccCcCCCCCCchHHHHHHHHHHHH
Confidence 99999988 69999999999888776544 2 224455666777888876 4 456666665443
No 30
>KOG3049|consensus
Probab=99.50 E-value=6.8e-15 Score=125.60 Aligned_cols=156 Identities=21% Similarity=0.383 Sum_probs=111.4
Q ss_pred ccccCCCCCC-CceEEEEECCEEEEEeecCC-CCCcHHHHHHh----hcCCCCCcccCCCCCccceEEEEccccCCCccc
Q psy7831 2 VYREDPLPKA-GKEVKFALNEKFYTVGEDVP-VGTRLVDFIRD----VAGLKGTKYMCREGGCGVCTVMVKSRHPVTKEL 75 (206)
Q Consensus 2 ~~~~~p~~~~-~~~i~f~vNG~~~~v~~~~~-p~~tLLd~LR~----~~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~ 75 (206)
||||||+... +..+ +.|+| +.+ =+..+||.|-. ...-..+|.+||||+||+|.+.|||.
T Consensus 51 IYRwnPd~pg~kP~~------Q~y~v--DL~~CGpMvLDALiKIKnE~DptLTFRRSCREGICGSCAMNI~G~------- 115 (288)
T KOG3049|consen 51 IYRWNPDNPGDKPHL------QTYEV--DLNDCGPMVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNINGT------- 115 (288)
T ss_pred EEecCCCCCCCCccc------eeeee--cHHhcchHHHHHHHHhhcccCCceehhhhhhccccccceeccCCC-------
Confidence 7999999887 4555 67777 443 47789998843 23445789999999999999999999
Q ss_pred ccccccchhhhhhhcCCCeEEEEcCCCCC-------------CCCccHHHHHHH-------------------------H
Q psy7831 76 LVYSVNACLVYVQMCNGWSIYTIDGLGDK-------------KHGYHKVQSRLA-------------------------L 117 (206)
Q Consensus 76 ~~~~v~sCl~~~~~~~g~~I~TvEgL~~~-------------~~~~~~vq~a~~-------------------------~ 117 (206)
..++|+..+.+- +...++|=+|..- -..|+.||.-+. -
T Consensus 116 ---NtLACi~kId~n-~sK~~kIyPLPHmfvvkDLVpDm~~FY~QYksIqPwlqrk~~~~~~g~~q~lQS~~dR~kLDGl 191 (288)
T KOG3049|consen 116 ---NTLACICKIDQN-ESKSTKIYPLPHMFVVKDLVPDMTNFYAQYKSIEPWLQRKNPAKEPGKKQYLQSVEDRAKLDGL 191 (288)
T ss_pred ---ceeEEEEeeccC-CcccceeecCcceeeehhhcccHHHHHHHHhcccHHhhcCCcccCccHHHHHHhHHHHHhhccH
Confidence 999999888763 3344566666320 022333333111 2
Q ss_pred cCCCccccCCCCcccccc-ccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHhcC--CcccCCC
Q psy7831 118 MNGTQCGYCSPGMVMAMH-RTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGG--NICRCTG 179 (206)
Q Consensus 118 ~~~~QCG~Ct~~~~~~~~-~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al~g--nlCRCtg 179 (206)
..++.|.-|+ -+||+- |..+.|+||+.+|-+|+.+.+++++.+.+++. .|.. .+-||..
T Consensus 192 YECILCACCs--TSCPSYWWN~ekYLGPAvLmqAyRWiiDSRD~~t~eRl~-~l~d~~slyrCHt 253 (288)
T KOG3049|consen 192 YECILCACCS--TSCPSYWWNSEKYLGPAVLMQAYRWIIDSRDEATKERLA-KLQDPFSLYRCHT 253 (288)
T ss_pred HHHHHHHHhc--CCCcccccCcccccCHHHHHHHHhhhhcchhHHHHHHHH-HhcCchhheehhh
Confidence 2467788999 899987 67789999999999999998888666666665 2322 4566654
No 31
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.84 E-value=7.4e-09 Score=75.95 Aligned_cols=69 Identities=28% Similarity=0.498 Sum_probs=47.5
Q ss_pred ceEEEEECCEEEEEeecCCCCCcHHHHHHhhcCC--CCC-------cccCCCCCccceEEEEccccCCCccccccc-ccc
Q psy7831 13 KEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGL--KGT-------KYMCREGGCGVCTVMVKSRHPVTKELLVYS-VNA 82 (206)
Q Consensus 13 ~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l--~g~-------K~gC~eG~CGACtVlVdG~~~~~~~~~~~~-v~s 82 (206)
..|+|+|||+++++ .++.||+++|+.. +. ... ..-|..|.|+.|.|.|||. + +.|
T Consensus 2 ~~v~i~idG~~v~~----~~G~til~al~~~-gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev~g~----------~~v~A 66 (82)
T PF13510_consen 2 KMVTITIDGKPVEV----PPGETILEALLAA-GIDIPRLCYHGRPRGGLCPIGSCRLCLVEVDGE----------PNVRA 66 (82)
T ss_dssp EEEEEEETTEEEEE----EET-BHHHHHHHT-T--B-EETTTS-EEBSSSSSTT-SS-EEEESSE----------EEEET
T ss_pred CEEEEEECCEEEEE----cCCCHHHHHHHHC-CCeEEEeeeccCcccccCCccccceEEEEECCC----------cceEc
Confidence 46899999998765 5899999999873 32 111 3336779999999999998 5 899
Q ss_pred hhhhhhhcCCCeEEEE
Q psy7831 83 CLVYVQMCNGWSIYTI 98 (206)
Q Consensus 83 Cl~~~~~~~g~~I~Tv 98 (206)
|.+++. +|..|.|-
T Consensus 67 C~t~v~--~GM~V~T~ 80 (82)
T PF13510_consen 67 CSTPVE--DGMVVETQ 80 (82)
T ss_dssp TT-B----TTEEEE--
T ss_pred ccCCCc--CCcEEEEe
Confidence 999987 68888764
No 32
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=98.64 E-value=3.4e-08 Score=70.77 Aligned_cols=69 Identities=35% Similarity=0.525 Sum_probs=51.5
Q ss_pred EEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccccCC--------Ccccccccccchhhh
Q psy7831 15 VKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPV--------TKELLVYSVNACLVY 86 (206)
Q Consensus 15 i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~~~~--------~~~~~~~~v~sCl~~ 86 (206)
++|..||...++ +++++++||++|++ .++. ++++|+.|.||+|.|.|..-... ........+++|.+.
T Consensus 1 v~~~~~~~~~~~--~~~~g~~ll~al~~-~g~~-~~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~~~~~~~~LaC~~~ 76 (84)
T cd00207 1 VTINVPGSGVEV--EVPEGETLLDAARE-AGID-IPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTR 76 (84)
T ss_pred CEEecCCCCEEE--EECCCCcHHHHHHH-cCCC-cccCCCCcCCcCCEEEEeeCccccCcccCCCHHHHhCCeEEEEeCe
Confidence 467887777778 78999999999998 6774 99999999999999999632111 011123467888887
Q ss_pred h
Q psy7831 87 V 87 (206)
Q Consensus 87 ~ 87 (206)
+
T Consensus 77 ~ 77 (84)
T cd00207 77 V 77 (84)
T ss_pred e
Confidence 6
No 33
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.63 E-value=7.2e-08 Score=94.00 Aligned_cols=150 Identities=23% Similarity=0.426 Sum_probs=98.3
Q ss_pred eEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCC------CCCccceEEEEccccCCCcccccccccchhhhh
Q psy7831 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCR------EGGCGVCTVMVKSRHPVTKELLVYSVNACLVYV 87 (206)
Q Consensus 14 ~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~------eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~ 87 (206)
+++|+|||++++ +.+++||+++|+.. |.. +...|. .|.|+.|.|.|||.+ ..+.||.+++
T Consensus 3 ~v~~~idg~~~~----~~~g~ti~~a~~~~-g~~-ip~~c~~~~~~~~g~C~~C~V~v~g~~--------~~~~aC~t~~ 68 (652)
T PRK12814 3 TISLTINGRSVT----AAPGTSILEAAASA-GIT-IPTLCFHQELEATGSCWMCIVEIKGKN--------RFVPACSTAV 68 (652)
T ss_pred eEEEEECCEEEE----eCCcCcHHHHHHHc-CCc-cccccCCCCCCCccccceeEEEECCCc--------ceecCcCCCC
Confidence 588999999764 57999999999873 542 334554 799999999999961 1489999999
Q ss_pred hhcCCCeEEEEcCCCCCCCCccHHH----HHHHHcCCCccc-cCCCCccccccccccCCC---CchHHHHHHHHHHh-CC
Q psy7831 88 QMCNGWSIYTIDGLGDKKHGYHKVQ----SRLALMNGTQCG-YCSPGMVMAMHRTQCGYC---SPGMVMAMHSFLME-HD 158 (206)
Q Consensus 88 ~~~~g~~I~TvEgL~~~~~~~~~vq----~a~~~~~~~QCG-~Ct~~~~~~~~~~~~~~~---~PG~vm~~~~ll~~-~~ 158 (206)
. +|..|.| +. +.+..++ +.+...++..|. .|+ ..||.+---++|. .-|-+-.++.++.+ ||
T Consensus 69 ~--~Gm~v~t-----~~-~~~~~~r~~~le~l~~~~c~~C~~pC~--~~CP~~~~~~~~~~~~~~g~~~~a~~~~~~~~p 138 (652)
T PRK12814 69 S--EGMVIET-----EN-AELHAMRRQSLERLIEQHCGDCLGPCE--LACPAGCNIPGFIAAIARGDDREAIRIIKETIP 138 (652)
T ss_pred C--CCCEEEe-----Cc-HHHHHHHHHHHHHHHhhcccccCCccc--cCCCCCCcHHHHHHHHHCCCHHHHHHHHHhhCC
Confidence 6 7999988 22 2455566 355577788887 788 8999885443332 12334445555544 33
Q ss_pred CCCCHHHHHHHhcCCcc------cCC--CC-HHH-HHHHHHHHHhhc
Q psy7831 159 YKVGKADVERALGGNIC------RCT--GY-RPI-LDTFQSFATDAC 195 (206)
Q Consensus 159 ~~~~~~ei~~al~gnlC------RCt--gy-~~i-~~a~~~~a~~~~ 195 (206)
-| +.-|.+| .|. .+ .+| +.+++.++.+..
T Consensus 139 -~p-------~~~grvC~~~Ce~~C~r~~~~~~v~i~~l~r~~~~~~ 177 (652)
T PRK12814 139 -LP-------GILGRICPAPCEEACRRHGVDEPVSICALKRYAADRD 177 (652)
T ss_pred -cc-------ceeeCCcCchhhHHHcCCCCCCCcchhHHHHHHHHHH
Confidence 22 1223333 132 22 344 777888877543
No 34
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=98.49 E-value=1.8e-07 Score=66.62 Aligned_cols=49 Identities=43% Similarity=0.748 Sum_probs=42.5
Q ss_pred EEECCEEEEEeecCCCCCc-HHHHHHhhcCCCCCcccCCCCCccceEEEEc-cc
Q psy7831 17 FALNEKFYTVGEDVPVGTR-LVDFIRDVAGLKGTKYMCREGGCGVCTVMVK-SR 68 (206)
Q Consensus 17 f~vNG~~~~v~~~~~p~~t-LLd~LR~~~~l~g~K~gC~eG~CGACtVlVd-G~ 68 (206)
+++||+.+++ ++.++.+ ||++|++ .+-..++++|+.|.||+|.|.|. |.
T Consensus 1 i~i~g~~~~~--~~~~~~~~ll~~~~~-~~gi~i~~~C~~g~Cg~C~v~v~~G~ 51 (78)
T PF00111_consen 1 ITINGKGVTV--EVPPGETLLLDALER-AGGIGIPYSCGGGGCGTCRVRVLEGE 51 (78)
T ss_dssp EETTTEEEEE--EEETTSBBHHHHHHH-TTTTTSTTSSSSSSSSTTEEEEEESE
T ss_pred CEECCeEEEE--EeCCCccHHHHHHHH-cCCCCcccCCCCCccCCcEEEEeeCc
Confidence 5789999999 8999999 9999997 43458999999999999999884 54
No 35
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=98.49 E-value=2.8e-07 Score=92.25 Aligned_cols=100 Identities=17% Similarity=0.277 Sum_probs=77.6
Q ss_pred EEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCC----CcccCC-CCCccceEEEEccccCCCcccccccccchhhhhhh
Q psy7831 15 VKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKG----TKYMCR-EGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQM 89 (206)
Q Consensus 15 i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g----~K~gC~-eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~~~ 89 (206)
++|+|||++++ +.+++|+|++++. .|... ...+|. .|.|+.|.|.|+|+ ++.||.+++.
T Consensus 2 v~i~IdG~~v~----~~~G~til~aa~~-~gi~iP~lC~~~~~~~~G~Cr~C~VeV~G~----------~~~AC~t~v~- 65 (819)
T PRK08493 2 ITITINGKECE----AQEGEYILNVARR-NGIFIPAICYLSGCSPTLACRLCMVEADGK----------RVYSCNTKAK- 65 (819)
T ss_pred eEEEECCEEEE----eCCCCHHHHHHHH-cCCccccccccCCCCCCccccceEEEECCE----------EeccccCCCC-
Confidence 78999999865 5699999999997 34432 344665 69999999999998 7999999995
Q ss_pred cCCCeEEEEcCCCCCCCCccHHHHHHHHcCCCccccCCCCcccc
Q psy7831 90 CNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMA 133 (206)
Q Consensus 90 ~~g~~I~TvEgL~~~~~~~~~vq~a~~~~~~~QCG~Ct~~~~~~ 133 (206)
+|..|.|-.+--. ..-+.+.+.+...|-.+|+.|..+--|.
T Consensus 66 -dGM~V~T~s~~v~--~~Rk~vle~ll~~HpldC~~Cd~~geCe 106 (819)
T PRK08493 66 -EGMNILTNTPNLM--DERNAIMQTYDVNHPLECGVCDKSGECE 106 (819)
T ss_pred -CCCEEEecCHHHH--HHHHHHHHHHHhccCCCCCcCCCCCCcH
Confidence 8999988533211 2246677788899999999999555564
No 36
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=98.34 E-value=1.2e-06 Score=75.41 Aligned_cols=97 Identities=19% Similarity=0.396 Sum_probs=70.8
Q ss_pred eEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCC------CCCccceEEEEccccCCCcccccccccchhhhh
Q psy7831 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCR------EGGCGVCTVMVKSRHPVTKELLVYSVNACLVYV 87 (206)
Q Consensus 14 ~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~------eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~ 87 (206)
.|+|+|||+.+ .+.+++|||+++++ .|+ .+...|. .|.||.|.|.|+|.. ..+.||.+++
T Consensus 3 ~v~i~idg~~~----~~~~g~til~a~~~-~gi-~ip~~C~~~~~~~~G~C~~C~V~v~g~~--------~~~~aC~t~v 68 (234)
T PRK07569 3 VKTLTIDDQLV----SAREGETLLEAARE-AGI-PIPTLCHLDGLSDVGACRLCLVEIEGSN--------KLLPACVTPV 68 (234)
T ss_pred eEEEEECCEEE----EeCCCCHHHHHHHH-cCC-CCCcCcCCCCCCCCCccCCcEEEECCCC--------ccccCcCCCC
Confidence 48899999985 56799999999987 354 3555566 999999999999961 1467999998
Q ss_pred hhcCCCeEEEEcCCCCCCCCccH----HHHHHHHcCCCccccCCCCccc
Q psy7831 88 QMCNGWSIYTIDGLGDKKHGYHK----VQSRLALMNGTQCGYCSPGMVM 132 (206)
Q Consensus 88 ~~~~g~~I~TvEgL~~~~~~~~~----vq~a~~~~~~~QCG~Ct~~~~~ 132 (206)
. +|..|.|-- +.+.. +.+.+...|-.-|..|..+--|
T Consensus 69 ~--~Gm~v~t~~------~~~~~~rk~~l~~ll~~h~~~C~~C~~~g~C 109 (234)
T PRK07569 69 A--EGMVVQTNT------PRLQEYRRMIVELLFAEGNHVCAVCVANGNC 109 (234)
T ss_pred C--CCCEEEECC------HHHHHHHHHHHHHHHHhccccCcccCCCCCc
Confidence 7 688887631 12333 3345567888889888843333
No 37
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=98.03 E-value=1.3e-05 Score=58.71 Aligned_cols=50 Identities=20% Similarity=0.452 Sum_probs=39.4
Q ss_pred eEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEE-ccc
Q psy7831 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMV-KSR 68 (206)
Q Consensus 14 ~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlV-dG~ 68 (206)
.|+|..+|+.+.+ .+++.+||+.|++ .|+ .+.++|+.|.||+|.+.+ +|.
T Consensus 3 ~v~~~~~~~~~~~---~~~~~tlL~a~~~-~gi-~~p~~Cr~G~Cg~C~~~~~sG~ 53 (84)
T PRK10713 3 RVTLRITGTQLLC---QDEHPSLLAALES-HNV-AVEYQCREGYCGSCRTRLVAGQ 53 (84)
T ss_pred EEEEEeCCcEEEe---cCCCCcHHHHHHH-cCC-CCCCCCCCeECCCCEeEEEeCe
Confidence 3667777776554 2346899999987 476 899999999999999997 664
No 38
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=97.93 E-value=2.3e-05 Score=58.86 Aligned_cols=45 Identities=27% Similarity=0.564 Sum_probs=37.8
Q ss_pred ECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEE-cc
Q psy7831 19 LNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMV-KS 67 (206)
Q Consensus 19 vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlV-dG 67 (206)
-+|...++ +++++.+||+.|++ .|+ .+.++|+.|.||.|.|.| +|
T Consensus 10 ~~~~~~~~--~~~~g~tLLda~~~-~Gi-~i~~~C~~G~Cg~C~v~v~~G 55 (97)
T TIGR02008 10 PDGGEETI--ECPDDQYILDAAEE-AGI-DLPYSCRAGACSTCAGKVEEG 55 (97)
T ss_pred CCCCEEEE--EECCCCcHHHHHHH-cCC-CCCcCCCCccCCCCceEEEeC
Confidence 37755667 78899999999987 476 689999999999999999 55
No 39
>CHL00134 petF ferredoxin; Validated
Probab=97.90 E-value=3.1e-05 Score=58.53 Aligned_cols=44 Identities=27% Similarity=0.579 Sum_probs=38.6
Q ss_pred CCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEE-cc
Q psy7831 20 NEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMV-KS 67 (206)
Q Consensus 20 NG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlV-dG 67 (206)
+|..+.+ .++++.+||+++++ .|+ .+.++|+.|.||.|.|.| +|
T Consensus 13 ~~~~~~~--~~~~~~tLL~a~~~-~Gi-~i~~~C~~G~Cg~C~v~v~~G 57 (99)
T CHL00134 13 EGIDVTI--DCPDDVYILDAAEE-QGI-DLPYSCRAGACSTCAGKVTEG 57 (99)
T ss_pred CCCeEEE--EECCCCcHHHHHHH-cCC-CCCcCCCCccCCCCEEEEEeC
Confidence 7777777 78999999999987 476 899999999999999999 55
No 40
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=97.68 E-value=0.00016 Score=64.77 Aligned_cols=102 Identities=17% Similarity=0.315 Sum_probs=71.9
Q ss_pred CceEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCC--C--CcccC-CCCCccceEEEEccccCCCcccccccccchhhh
Q psy7831 12 GKEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLK--G--TKYMC-REGGCGVCTVMVKSRHPVTKELLVYSVNACLVY 86 (206)
Q Consensus 12 ~~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~--g--~K~gC-~eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~ 86 (206)
+..+.++|||+++++ +++++|||++.|+. |+. . ....- ..|.|.-|.|.|+|+. ..+.||.++
T Consensus 66 ~~~~~I~IDGk~VeV---~~~G~TILeAAr~~-GI~IPtLCy~~~L~p~G~CRlClVEVeG~~--------~lv~AC~tp 133 (297)
T PTZ00305 66 KPRAIMFVNKRPVEI---IPQEENLLEVLERE-GIRVPKFCYHPILSVAGNCRMCLVQVDGTQ--------NLVVSCATV 133 (297)
T ss_pred CCceEEEECCEEEEe---cCCCChHHHHHHHc-CCCcCccccCCCCCCCCccceeEEEECCCc--------CcccccCCc
Confidence 467899999998754 37899999999873 331 1 11122 3789999999999862 278999999
Q ss_pred hhhcCCCeEEEEcCCCCCCCCccHHHH----HHHHcCCCccccCCCCcccc
Q psy7831 87 VQMCNGWSIYTIDGLGDKKHGYHKVQS----RLALMNGTQCGYCSPGMVMA 133 (206)
Q Consensus 87 ~~~~~g~~I~TvEgL~~~~~~~~~vq~----a~~~~~~~QCG~Ct~~~~~~ 133 (206)
+. +|..|.|= + +.....++ .+...|-.-|..|.....|.
T Consensus 134 V~--eGM~V~T~-----S-e~v~~~Rk~vLElLLs~Hp~DC~~C~k~G~Ce 176 (297)
T PTZ00305 134 AL--PGMSIITD-----S-RLVRDAREGNVELILINHPNDCPICEQATNCD 176 (297)
T ss_pred CC--CCCEEEeC-----C-HHHHHHHHHHHHHHHhcCCCcCCcccCcCCcH
Confidence 97 69998872 2 23333333 45577888898888555554
No 41
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=97.66 E-value=8.1e-05 Score=67.12 Aligned_cols=50 Identities=30% Similarity=0.404 Sum_probs=42.5
Q ss_pred EEEEE---CCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEE-ccc
Q psy7831 15 VKFAL---NEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMV-KSR 68 (206)
Q Consensus 15 i~f~v---NG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlV-dG~ 68 (206)
.+|++ ||+.+.+ ++.++.||||.+++ .|+ .+.++|++|.||.|.+.| +|.
T Consensus 3 ~~v~~~~~~~~~~~~--~~~~g~tlL~a~~~-~g~-~~p~~C~~G~Cg~C~~~~~~G~ 56 (340)
T PRK11872 3 HKVALSFADGKTLFF--PVGKDELLLDAALR-NGI-NLPLDCREGVCGTCQGRCESGI 56 (340)
T ss_pred eEEEEEecCCcEEEE--EeCCCCcHHHHHHH-cCC-CCcCCCCCeECCCCEEEEEeCc
Confidence 45666 9988878 78999999999987 476 889999999999999998 554
No 42
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=97.59 E-value=0.00014 Score=72.84 Aligned_cols=101 Identities=22% Similarity=0.343 Sum_probs=72.7
Q ss_pred ceEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccC------CCCCccceEEEEccccCCCcccccccccchhhh
Q psy7831 13 KEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMC------REGGCGVCTVMVKSRHPVTKELLVYSVNACLVY 86 (206)
Q Consensus 13 ~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC------~eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~ 86 (206)
.+++|+|||++++ +.+++|||++.+. .+. .+..-| ..|.|.-|.|.|+|.+ +.+.||.++
T Consensus 3 ~~v~~~idg~~~~----~~~g~til~aa~~-~gi-~ip~~C~~~~l~~~g~Cr~C~Vev~g~~--------~~~~aC~t~ 68 (797)
T PRK07860 3 DLVTLTIDGVEVS----VPKGTLVIRAAEL-LGI-QIPRFCDHPLLDPVGACRQCLVEVEGQR--------KPQASCTTT 68 (797)
T ss_pred ceEEEEECCEEEE----eCCCChHHHHHHH-cCC-CCCeecCCCCCCCCcccCccEEEECCCc--------ccccccCCC
Confidence 3589999999764 6799999999986 343 233334 4899999999999861 158899999
Q ss_pred hhhcCCCeEEEEcCCCCCCCCcc----HHHHHHHHcCCCccccCCCCcccc
Q psy7831 87 VQMCNGWSIYTIDGLGDKKHGYH----KVQSRLALMNGTQCGYCSPGMVMA 133 (206)
Q Consensus 87 ~~~~~g~~I~TvEgL~~~~~~~~----~vq~a~~~~~~~QCG~Ct~~~~~~ 133 (206)
+. +|..|.|- .. + +... -+-+.+...|-..|..|-.+--|.
T Consensus 69 v~--~gm~V~t~--~~-s-~~v~~~r~~~le~ll~~hp~dC~~C~~~g~C~ 113 (797)
T PRK07860 69 VT--DGMVVKTQ--LT-S-PVADKAQHGVMELLLINHPLDCPVCDKGGECP 113 (797)
T ss_pred CC--CCcEEEeC--CC-C-HHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcH
Confidence 97 68888873 11 1 1233 333455578888899999666675
No 43
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=97.58 E-value=0.00013 Score=72.61 Aligned_cols=98 Identities=23% Similarity=0.413 Sum_probs=71.4
Q ss_pred eEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCC------CCCccceEEEEccccCCCcccccccccchhhhh
Q psy7831 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCR------EGGCGVCTVMVKSRHPVTKELLVYSVNACLVYV 87 (206)
Q Consensus 14 ~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~------eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~ 87 (206)
+|+|+|||++++ +.+++|||++++. .|. -+..-|. .|.|..|.|.|+|.+ +.+.||.+++
T Consensus 1 m~~~~idg~~~~----~~~g~~il~a~~~-~g~-~ip~~c~~~~~~~~~~C~~C~v~v~~~~--------~~~~aC~~~~ 66 (776)
T PRK09129 1 MVEIEIDGKKVE----VPEGSMVIEAADK-AGI-YIPRFCYHKKLSIAANCRMCLVEVEKAP--------KPLPACATPV 66 (776)
T ss_pred CeEEEECCEEEE----eCCCCHHHHHHHH-cCC-CCCcccCCCCCCCCCCcceeEEEECCCC--------CcCcccCCCC
Confidence 378999999864 5789999999987 343 2223354 689999999999861 1488999998
Q ss_pred hhcCCCeEEEEcCCCCCCCCccHHHH----HHHHcCCCccccCCCCcccc
Q psy7831 88 QMCNGWSIYTIDGLGDKKHGYHKVQS----RLALMNGTQCGYCSPGMVMA 133 (206)
Q Consensus 88 ~~~~g~~I~TvEgL~~~~~~~~~vq~----a~~~~~~~QCG~Ct~~~~~~ 133 (206)
. +|..|.|-. +.....++ .+...|-..|..|..+--|.
T Consensus 67 ~--~gm~v~t~~------~~~~~~r~~~l~~ll~~h~~~C~~c~~~g~C~ 108 (776)
T PRK09129 67 T--DGMKVFTRS------EKALKAQKSVMEFLLINHPLDCPICDQGGECQ 108 (776)
T ss_pred C--CCCEEEcCC------HHHHHHHHHHHHHHHhcCCCCcccCCCCCCCH
Confidence 7 699988722 22333333 55588889999999666665
No 44
>PLN03136 Ferredoxin; Provisional
Probab=97.58 E-value=0.00015 Score=59.04 Aligned_cols=50 Identities=30% Similarity=0.529 Sum_probs=39.0
Q ss_pred EEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEE-ccc
Q psy7831 15 VKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMV-KSR 68 (206)
Q Consensus 15 i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlV-dG~ 68 (206)
|.|..++...++ +++++.+|||.+++ .|+ ...++|+.|.||+|.+.| .|.
T Consensus 57 V~l~~~~~~~~~--~~~~g~tILdAa~~-~Gi-~lp~sCr~G~CGtC~~~l~~G~ 107 (148)
T PLN03136 57 VKFITPEGEQEV--ECEEDVYVLDAAEE-AGI-DLPYSCRAGSCSSCAGKVVSGS 107 (148)
T ss_pred EEEecCCCcEEE--EeCCCCcHHHHHHH-cCC-CCCcCCCCccCCCCEEEEecCc
Confidence 444324444567 78899999999987 476 799999999999999999 553
No 45
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=97.56 E-value=0.00017 Score=71.25 Aligned_cols=99 Identities=28% Similarity=0.451 Sum_probs=73.6
Q ss_pred eEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCC------CCCccceEEEEccccCCCcccccccccchhhhh
Q psy7831 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCR------EGGCGVCTVMVKSRHPVTKELLVYSVNACLVYV 87 (206)
Q Consensus 14 ~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~------eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~ 87 (206)
+++++|||+++ ++++++|+|++.+. .|. .+..-|- .|.|..|.|.|+|.++ +++.||.+++
T Consensus 1 m~~~~Idg~~v----~v~~g~til~a~~~-~gi-~IP~lCy~~~l~~~g~Cr~ClVev~~~~~-------~~~~sC~~~v 67 (687)
T PRK09130 1 MVKLKVDGKEI----EVPDGYTLLQACEA-AGA-EIPRFCYHERLSIAGNCRMCLVEVKGGPP-------KPVASCAMPV 67 (687)
T ss_pred CeEEEECCEEE----EeCCCCHHHHHHHH-cCC-CcCcccCCCCCCCCCCCCCCEEEECCCCC-------CcccccCCCC
Confidence 37899999976 46799999999987 455 3445564 7999999999987422 2799999998
Q ss_pred hhcCCCeEEEEcCCCCCCCCccHHH----HHHHHcCCCccccCCCCcccc
Q psy7831 88 QMCNGWSIYTIDGLGDKKHGYHKVQ----SRLALMNGTQCGYCSPGMVMA 133 (206)
Q Consensus 88 ~~~~g~~I~TvEgL~~~~~~~~~vq----~a~~~~~~~QCG~Ct~~~~~~ 133 (206)
. +|..|.|= + +..+..+ +.+...|-.-|..|..+--|.
T Consensus 68 ~--~gm~v~T~-----s-~~v~~~r~~~le~ll~~Hp~dC~~C~~~g~C~ 109 (687)
T PRK09130 68 G--EGMVIFTN-----T-PMVKKAREGVMEFLLINHPLDCPICDQGGECD 109 (687)
T ss_pred C--CCCEEEeC-----C-HHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCH
Confidence 7 69998872 2 2233333 355578888899999666665
No 46
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=97.46 E-value=0.00036 Score=62.81 Aligned_cols=52 Identities=19% Similarity=0.419 Sum_probs=44.4
Q ss_pred ceEEEEECCEEEE-EeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEE-ccc
Q psy7831 13 KEVKFALNEKFYT-VGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMV-KSR 68 (206)
Q Consensus 13 ~~i~f~vNG~~~~-v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlV-dG~ 68 (206)
..|+|+.+|+.++ + .+++++|||+.+.+ .|+ .+.++|+.|.||+|.+.+ +|.
T Consensus 263 ~~v~~~~~~~~~~~~--~~~~~~slL~~~~~-~gi-~~~~~C~~G~Cg~C~~~~~~G~ 316 (352)
T TIGR02160 263 SKVTVTLDGRSTETS--SLSRDESVLDAALR-ARP-DLPFACKGGVCGTCRAKVLEGK 316 (352)
T ss_pred eEEEEEECCceEEEE--ecCCCCcHHHHHHH-cCC-CCcCCCCCccCCCCEEEEeccc
Confidence 4688999998775 4 68899999999987 576 899999999999999998 554
No 47
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=97.46 E-value=0.00019 Score=69.53 Aligned_cols=96 Identities=25% Similarity=0.406 Sum_probs=71.2
Q ss_pred EEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCC------CCCccceEEEEccccCCCcccccccccchhhhhhhc
Q psy7831 17 FALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCR------EGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMC 90 (206)
Q Consensus 17 f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~------eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~~~~ 90 (206)
|+|||++++ +++++|||+++++ .|. .+..-|. .|.|..|.|.|+|.+- ..+.||.+++.
T Consensus 1 ~~idg~~~~----~~~g~~il~a~~~-~gi-~ip~~C~~~~l~~~g~Cr~C~v~v~g~~~-------~~~~aC~~~~~-- 65 (603)
T TIGR01973 1 IFIDGKELE----VPKGTTVLQACLS-AGI-EIPRFCYHEKLSIAGNCRMCLVEVEKFPD-------KPVASCATPVT-- 65 (603)
T ss_pred CEECCEEEE----eCCCCHHHHHHHH-cCC-CccccCCCCCCCCCCccccCEEEECCCCC-------CcccccCCCCC--
Confidence 589999764 5789999999987 455 4456685 8999999999999610 15899999987
Q ss_pred CCCeEEEEcCCCCCCCCccHHHH----HHHHcCCCccccCCCCcccc
Q psy7831 91 NGWSIYTIDGLGDKKHGYHKVQS----RLALMNGTQCGYCSPGMVMA 133 (206)
Q Consensus 91 ~g~~I~TvEgL~~~~~~~~~vq~----a~~~~~~~QCG~Ct~~~~~~ 133 (206)
+|..|.|- . +..+..|+ .+...|-.-|..|..+--|.
T Consensus 66 ~gm~v~t~-----~-~~~~~~r~~~~e~ll~~h~~dC~~C~~~g~C~ 106 (603)
T TIGR01973 66 DGMKISTN-----S-EKVKKAREGVMEFLLINHPLDCPICDQGGECD 106 (603)
T ss_pred CCCEEEeC-----C-HHHHHHHHHHHHHHHhcCCCCCCcCCCCCCCh
Confidence 69998882 1 23444444 55578888899999555565
No 48
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=97.42 E-value=0.00027 Score=71.06 Aligned_cols=106 Identities=20% Similarity=0.259 Sum_probs=73.4
Q ss_pred eEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCC------CCCccceEEEEc-cccCCCcccccccccchhhh
Q psy7831 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCR------EGGCGVCTVMVK-SRHPVTKELLVYSVNACLVY 86 (206)
Q Consensus 14 ~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~------eG~CGACtVlVd-G~~~~~~~~~~~~v~sCl~~ 86 (206)
+++|+|||++++ +.+++|||++++. .|+ .+.+.|. .|.|+.|.|.|. |.. ......+.||.++
T Consensus 1 ~~~i~idg~~~~----~~~g~til~a~~~-~gi-~ip~~C~~~~~~~~G~C~~C~v~v~~g~~----~~~~~~~~aC~~~ 70 (847)
T PRK08166 1 MATIHVDGKEYE----VNGADNLLEACLS-LGI-DIPYFCWHPALGSVGACRQCAVKQYQNPE----DTRGRLVMSCMTP 70 (847)
T ss_pred CeEEEECCEEEE----eCCCCHHHHHHHH-cCC-CCCccccCCCCCCCCccCCCeEEEeecCc----cCCCCcccCcCCC
Confidence 368999999864 5689999999987 455 5678898 599999999993 310 0001268899998
Q ss_pred hhhcCCCeEEEEcCCCCCCCCccHHHHHHHHcCCCccccCCCCcccc
Q psy7831 87 VQMCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMA 133 (206)
Q Consensus 87 ~~~~~g~~I~TvEgL~~~~~~~~~vq~a~~~~~~~QCG~Ct~~~~~~ 133 (206)
+. +|..|.|-.+--. ..-+.+.+.+...|-..|..|..+=.|.
T Consensus 71 v~--~gm~v~t~~~~~~--~~r~~~~e~ll~~hp~dc~~c~~~g~c~ 113 (847)
T PRK08166 71 AT--DGTFISIDDPEAK--AFRASVVEWLMTNHPHDCPVCEEGGNCH 113 (847)
T ss_pred CC--CCCEEEeCCHHHH--HHHHHHHHHHHhcCCCCCCccCCCCCch
Confidence 87 5888876322110 1123455566688989999999555554
No 49
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=97.41 E-value=0.00033 Score=56.80 Aligned_cols=81 Identities=26% Similarity=0.397 Sum_probs=55.9
Q ss_pred eEEEEE---CCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCC-CCCccceEEEEccc-----cC---------CCc-c
Q psy7831 14 EVKFAL---NEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCR-EGGCGVCTVMVKSR-----HP---------VTK-E 74 (206)
Q Consensus 14 ~i~f~v---NG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~-eG~CGACtVlVdG~-----~~---------~~~-~ 74 (206)
++++++ +|..+++ ++.++.+|+++|+++. ...+...|+ .|.||.|.|.|... ++ ... .
T Consensus 35 ~v~I~~~~~dG~~~~v--~~~~G~sLLeal~~~~-~i~i~~~CGG~g~CgtC~V~V~~g~~~~l~~~~~~E~~~L~~~~~ 111 (143)
T PTZ00490 35 KVKVCVKKRDGTHCDV--EVPVGMSLMHALRDVA-KLDVEGTCNGCMQCATCHVYLSAASFKKLGGPSEEEEDVLAKALD 111 (143)
T ss_pred cEEEEEEcCCCCEEEE--EECCCccHHHHHHHcC-CCCccccCCCCCEeCCCEEEECCCccccCCCCChHHHHHhhcccc
Confidence 455555 4677889 8999999999999843 346777897 89999999999441 10 111 2
Q ss_pred cccccccchhhhhhh-cCCCeEEE
Q psy7831 75 LLVYSVNACLVYVQM-CNGWSIYT 97 (206)
Q Consensus 75 ~~~~~v~sCl~~~~~-~~g~~I~T 97 (206)
.....++||++.+.. ++|-.|..
T Consensus 112 ~~~gsRLaCQi~v~~~ldgl~V~v 135 (143)
T PTZ00490 112 VKETSRLACQVDLTPEMDGLEVEL 135 (143)
T ss_pred CCCCcEEeeeEEEecCCCCEEEEe
Confidence 233457999998875 55655543
No 50
>PTZ00038 ferredoxin; Provisional
Probab=97.26 E-value=0.00058 Score=57.85 Aligned_cols=49 Identities=16% Similarity=0.457 Sum_probs=38.1
Q ss_pred eEEEE-ECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEE-cc
Q psy7831 14 EVKFA-LNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMV-KS 67 (206)
Q Consensus 14 ~i~f~-vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlV-dG 67 (206)
.|+|. .+| ..++ +++++++||+++++ .|+ .+.++|+.|.||.|.|.| .|
T Consensus 97 ~Vt~~~~~g-~~~~--~v~~geTILdAae~-aGI-~lp~sCr~G~CGtCkvrV~~G 147 (191)
T PTZ00038 97 NITLQTPDG-EKVI--ECDEDEYILDAAER-QGV-ELPYSCRGGSCSTCAAKLLEG 147 (191)
T ss_pred EEEEEeCCC-cEEE--EeCCCCcHHHHHHH-cCC-CCCcCCCCccCCCCEeEEeec
Confidence 34554 234 2456 68899999999987 476 899999999999999998 44
No 51
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=97.22 E-value=0.0005 Score=61.59 Aligned_cols=51 Identities=25% Similarity=0.485 Sum_probs=38.7
Q ss_pred eEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEE-ccc
Q psy7831 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMV-KSR 68 (206)
Q Consensus 14 ~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlV-dG~ 68 (206)
.++++++....++ .++++.+||++|++ .|+ .+.++|+.|.||+|.|.+ +|.
T Consensus 248 ~~~v~~~~~~~~~--~~~~~~~lL~~~~~-~gi-~~~~~C~~G~Cg~C~~~~~~G~ 299 (332)
T PRK10684 248 GLTFTKLQPAREF--YAPVGTTLLEALES-NKV-PVVAACRAGVCGCCKTKVVSGE 299 (332)
T ss_pred ceEEEEecCCEEE--EeCCCChHHHHHHH-cCC-CccCCCCCcCCCCCEEEEecCc
Confidence 3444444333445 56789999999987 576 899999999999999998 554
No 52
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=97.20 E-value=0.00047 Score=61.70 Aligned_cols=50 Identities=18% Similarity=0.420 Sum_probs=40.1
Q ss_pred ceEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEE-ccc
Q psy7831 13 KEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMV-KSR 68 (206)
Q Consensus 13 ~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlV-dG~ 68 (206)
..|+|..+|+. + +++++.+||+.+++ .|+ .+.++|+.|.||.|.|.| +|.
T Consensus 3 ~~v~~~~~~~~--~--~~~~g~tlL~a~~~-~gi-~~~~~C~~G~Cg~C~~~~~~G~ 53 (339)
T PRK07609 3 FQVTLQPSGRQ--F--TAEPDETILDAALR-QGI-HLPYGCKNGACGSCKGRLLEGE 53 (339)
T ss_pred EEEEEecCCeE--E--EeCCCCcHHHHHHH-cCC-CCCCCCCCeECCCCEEEEEECc
Confidence 35777777765 4 56789999999987 466 689999999999999986 554
No 53
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=97.00 E-value=0.0016 Score=49.55 Aligned_cols=48 Identities=27% Similarity=0.587 Sum_probs=35.9
Q ss_pred EEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEE-cc
Q psy7831 17 FALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMV-KS 67 (206)
Q Consensus 17 f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlV-dG 67 (206)
+..++...... .++.+.+||+++.+ .|+. ..++|+.|.||+|.|.| +|
T Consensus 7 v~~~~~~~~~~-~~~~g~tiLe~a~~-~gi~-i~~~C~~g~C~TC~v~v~~G 55 (102)
T COG0633 7 VTIDGEGDVTE-AVNEGETLLEAAER-NGIP-IEYACRGGACGTCRVKVLEG 55 (102)
T ss_pred EeccCCcceEE-eccCCcHHHHHHHH-CCCc-ceecCCCCccCccEEEEecC
Confidence 44455333331 56669999999987 4664 88999999999999999 55
No 54
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=97.00 E-value=0.0013 Score=51.22 Aligned_cols=78 Identities=23% Similarity=0.376 Sum_probs=54.1
Q ss_pred eEEE-EECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCC-CCCccceEEEE-cccc--C---C----------Cccc
Q psy7831 14 EVKF-ALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCR-EGGCGVCTVMV-KSRH--P---V----------TKEL 75 (206)
Q Consensus 14 ~i~f-~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~-eG~CGACtVlV-dG~~--~---~----------~~~~ 75 (206)
+|+| ..+|++.++ ++.+++|||+++++ .++ .+...|+ .|.||.|.|.| ++.. . . ....
T Consensus 2 ~V~fi~~~G~~~~v--~~~~G~tLl~a~~~-~gi-~i~~~CgG~g~C~tC~V~V~~~~~~~~l~~~~~~E~~~L~~~~~~ 77 (117)
T PLN02593 2 SVTFVDKDGEERTV--KAPVGMSLLEAAHE-NDI-ELEGACEGSLACSTCHVIVMDEKVYNKLPEPTDEENDMLDLAFGL 77 (117)
T ss_pred EEEEEcCCCCEEEE--EECCCCcHHHHHHH-cCC-CCCccCCCcceeCCCEEEEecCccccCCCCCChHHHHHHhcccCC
Confidence 4666 478888888 78899999999987 466 4778999 49999999999 3221 0 0 0112
Q ss_pred ccccccchhhhhhh-cCCCeE
Q psy7831 76 LVYSVNACLVYVQM-CNGWSI 95 (206)
Q Consensus 76 ~~~~v~sCl~~~~~-~~g~~I 95 (206)
....++||.+.+.. ++|..|
T Consensus 78 ~~~sRLaCQ~~v~~~~~~~~v 98 (117)
T PLN02593 78 TETSRLGCQVIAKPELDGMRL 98 (117)
T ss_pred CCCeEecceeEeecCCCCEEE
Confidence 22356999987754 345443
No 55
>PRK05713 hypothetical protein; Provisional
Probab=96.92 E-value=0.0014 Score=58.37 Aligned_cols=47 Identities=32% Similarity=0.764 Sum_probs=38.7
Q ss_pred EEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEE-ccc
Q psy7831 16 KFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMV-KSR 68 (206)
Q Consensus 16 ~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlV-dG~ 68 (206)
+|++||+.+ ++.+++||||++++ .|+ ...++|+.|.||.|.|.| +|.
T Consensus 3 ~~~~~~~~~----~~~~g~tlL~a~~~-~gi-~~~~~C~~G~Cg~C~~~~~~G~ 50 (312)
T PRK05713 3 ELRVGERRW----SVPAGSNLLDALNA-AGV-AVPYSCRAGSCHACLVRCLQGE 50 (312)
T ss_pred cEecCCeEE----EECCCCcHHHHHHH-cCC-CCCcCCCCcCCCCCeEEEEeCc
Confidence 577899764 56789999999987 466 678899999999999998 553
No 56
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=96.70 E-value=0.0024 Score=59.02 Aligned_cols=52 Identities=29% Similarity=0.564 Sum_probs=41.1
Q ss_pred ceEEEEECCE-EEEEeecCCCCCcHHHHHHhhcCCCCCcccCCC-CCccceEEEE-ccc
Q psy7831 13 KEVKFALNEK-FYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCRE-GGCGVCTVMV-KSR 68 (206)
Q Consensus 13 ~~i~f~vNG~-~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~e-G~CGACtVlV-dG~ 68 (206)
.++++++||. ..++ ++.++++||+.+++ .++ ...++|+. |.||.|.|.| .|.
T Consensus 34 ~~~~i~~~~~~~~~~--~~~~g~tLL~a~~~-~gi-~i~~~C~g~G~CgtC~v~v~~G~ 88 (409)
T PRK05464 34 GDVTIKINGDPEKTI--TVPAGGKLLGALAS-NGI-FLSSACGGGGSCGQCRVKVKEGG 88 (409)
T ss_pred ccEEEEEcCCCcEEE--EECCCchHHHHHHH-cCC-CcccCCCCccEeCCCEEEEecCC
Confidence 4577788873 3466 68899999999987 466 57889995 9999999998 553
No 57
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=96.66 E-value=0.0033 Score=48.30 Aligned_cols=37 Identities=22% Similarity=0.573 Sum_probs=31.3
Q ss_pred cCCCCCcHHHHHHhhcCCCCCcccCC-CCCccceEEEE-cc
Q psy7831 29 DVPVGTRLVDFIRDVAGLKGTKYMCR-EGGCGVCTVMV-KS 67 (206)
Q Consensus 29 ~~~p~~tLLd~LR~~~~l~g~K~gC~-eG~CGACtVlV-dG 67 (206)
++.++++||++|++ .++ .+.++|+ .|.||.|.|.| +|
T Consensus 19 ~~~~g~tLL~a~~~-~gi-~i~~~CgG~G~CgtC~v~V~~G 57 (110)
T TIGR02007 19 EAKPGETILDVALD-NGI-EIEHACEKSCACTTCHCIVREG 57 (110)
T ss_pred EECCCChHHHHHHH-cCC-CccccCCCCceeCCCEEEEeec
Confidence 56789999999987 466 5888998 69999999998 44
No 58
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=96.61 E-value=0.0037 Score=62.01 Aligned_cols=103 Identities=23% Similarity=0.330 Sum_probs=70.3
Q ss_pred eEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCC----CCcccC-CCCCccceEEEEccccCCCcccccccccchhhhhh
Q psy7831 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLK----GTKYMC-REGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQ 88 (206)
Q Consensus 14 ~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~----g~K~gC-~eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~~ 88 (206)
+++++|||+++ +++.+.+||+..++ .|+. =....| --|.|..|.|.|+|.+ +++.||.+|+.
T Consensus 1 m~tI~IDG~ei----~v~~g~tvLqAa~~-aGi~IP~fCyh~~ls~~GaCRmClVEveg~~--------k~~~SC~tpv~ 67 (693)
T COG1034 1 MVTITIDGKEI----EVPEGETVLQAARE-AGIDIPTFCYHPRLSIAGACRMCLVEVEGAP--------KLVASCATPVT 67 (693)
T ss_pred CeEEEECCEEE----ecCCCcHHHHHHHH-cCCCCCcccccCCCCcccceeEEEEEecCCC--------ccccccccccC
Confidence 36889999976 46788899999987 4442 123333 3688999999999931 28999999776
Q ss_pred hcCCCeEEEEcCCCCCCCCccHHHHHHHHcCCCccccCCCCcccc
Q psy7831 89 MCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMA 133 (206)
Q Consensus 89 ~~~g~~I~TvEgL~~~~~~~~~vq~a~~~~~~~QCG~Ct~~~~~~ 133 (206)
+|..|.|=-..-. ..-+-|-+.+.-.|-.-|+-|-.|=-|.
T Consensus 68 --dGM~I~T~s~~vk--~~R~~vmE~LLiNHPlDCpiCD~gGeCe 108 (693)
T COG1034 68 --DGMVISTNSEEVK--KAREGVMEFLLINHPLDCPVCDKGGECE 108 (693)
T ss_pred --CCeEEecCCHHHH--HHHHHHHHHHHhcCCCCCCccCCCCCch
Confidence 6766544211110 1123445566688999999999666665
No 59
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=96.55 E-value=0.0036 Score=57.82 Aligned_cols=50 Identities=26% Similarity=0.604 Sum_probs=40.2
Q ss_pred ceEEEEECC-EEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCC-CCccceEEEEc
Q psy7831 13 KEVKFALNE-KFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCRE-GGCGVCTVMVK 66 (206)
Q Consensus 13 ~~i~f~vNG-~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~e-G~CGACtVlVd 66 (206)
..+++++|+ ...++ ++.+++|||+.+++ .++ ...+.|+. |.||.|.|.|.
T Consensus 30 ~~v~v~~~~~~~~~~--~~~~g~tlL~a~~~-~gi-~i~~~C~g~G~Cg~C~v~v~ 81 (405)
T TIGR01941 30 GDITIGINDDEEKSI--TVPAGGKLLNTLAS-NGI-FISSACGGGGTCGQCRVRVV 81 (405)
T ss_pred ccEEEEEcCCCceEE--EECCCChHHHHHHH-cCC-CCcccCCCccEeCCCEEEEc
Confidence 358888885 44566 68899999999987 466 58889995 89999999983
No 60
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=96.51 E-value=0.0049 Score=61.57 Aligned_cols=95 Identities=19% Similarity=0.386 Sum_probs=67.3
Q ss_pred ceEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccC------CCCCccceEEEEccccCCCcccccccccchhhh
Q psy7831 13 KEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMC------REGGCGVCTVMVKSRHPVTKELLVYSVNACLVY 86 (206)
Q Consensus 13 ~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC------~eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~ 86 (206)
..++++|||+.+ ++++++|+|+++.++ ++ -+..-| .-+.|-.|.|.|||+ -+.||.++
T Consensus 4 ~~i~vtidg~~~----~v~~G~tiL~a~~~~-gI-~iP~iCy~~~l~pi~sCd~ClVEidG~----------l~rsCsT~ 67 (978)
T COG3383 4 KMITVTIDGRSI----EVEEGTTILRAANRN-GI-EIPHICYHESLGPIGSCDTCLVEIDGK----------LVRSCSTP 67 (978)
T ss_pred eeEEEEECCeEE----ecCCChHHHHHHHhc-CC-cccceeccCCCCcccccceEEEEecCc----------eecccccc
Confidence 458999999975 567899999999873 33 222223 457899999999999 89999999
Q ss_pred hhhcCCCeEEEEcCCCCCCCCccHHHHHHHHcCCCccccCC
Q psy7831 87 VQMCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCS 127 (206)
Q Consensus 87 ~~~~~g~~I~TvEgL~~~~~~~~~vq~a~~~~~~~QCG~Ct 127 (206)
+. +|..|.|-...-+ +.-+.+-++++..|-.-|--|-
T Consensus 68 v~--dGm~v~t~s~rvk--~~r~~~md~~l~nH~LyC~vCd 104 (978)
T COG3383 68 VE--DGMVVRTNSERVK--EARREAMDRILSNHPLYCTVCD 104 (978)
T ss_pred cc--CCcEEecccHHHH--HHHHHHHHHHHhcCCcCccccC
Confidence 86 6888887544321 1122333466778877665554
No 61
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.20 E-value=0.057 Score=55.51 Aligned_cols=81 Identities=15% Similarity=0.052 Sum_probs=58.5
Q ss_pred CCceEEEEECCEEEEEeecCCCCCcHHHHHHhh---cCCCCCccc------CCCCCccceEEEEccccCCCccccccccc
Q psy7831 11 AGKEVKFALNEKFYTVGEDVPVGTRLVDFIRDV---AGLKGTKYM------CREGGCGVCTVMVKSRHPVTKELLVYSVN 81 (206)
Q Consensus 11 ~~~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~---~~l~g~K~g------C~eG~CGACtVlVdG~~~~~~~~~~~~v~ 81 (206)
.+..++|++||+.+ .+.+++||...|-.. .--.++|++ |..|.|--|.|.|||.... . ..+.
T Consensus 9 ~~~~~~~~~dg~~~----~~~~g~t~a~al~a~g~~~~~~s~~~~~prg~~c~~~~~~~c~v~i~~~~~~---~--~~~~ 79 (985)
T TIGR01372 9 RSRPLRFTFDGKSY----SGFAGDTLASALLANGVHLVGRSFKYHRPRGILTAGVEEPNALVTVGSGAQR---E--PNTR 79 (985)
T ss_pred CCCeEEEEECCEEe----ecCCCCHHHHHHHhCCCeeecccCCCCCCCcccccCccCCCeEEEECCCcCC---C--CCcc
Confidence 35689999999986 567999999988542 111234443 8877789999999973000 0 1689
Q ss_pred chhhhhhhcCCCeEEEEcCCC
Q psy7831 82 ACLVYVQMCNGWSIYTIDGLG 102 (206)
Q Consensus 82 sCl~~~~~~~g~~I~TvEgL~ 102 (206)
+|++++. +|..|.+.-+..
T Consensus 80 ac~~~~~--~gm~~~~~~~~~ 98 (985)
T TIGR01372 80 ATTQELY--DGLVATSQNRWP 98 (985)
T ss_pred ceeEEcc--cCCEEecccCCC
Confidence 9999997 688888877654
No 62
>KOG2282|consensus
Probab=92.00 E-value=0.48 Score=46.05 Aligned_cols=104 Identities=24% Similarity=0.439 Sum_probs=75.6
Q ss_pred CceEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCC------CCCccceEEEEccccCCCcccccccccchhh
Q psy7831 12 GKEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCR------EGGCGVCTVMVKSRHPVTKELLVYSVNACLV 85 (206)
Q Consensus 12 ~~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~------eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~ 85 (206)
...|.++|+|+.+ .++|++|+|+.-.. .|.. +..-|- .|.|-.|.|.|..- | +||-||-+
T Consensus 30 ~~~ievfvd~~~v----~v~pg~tvlqac~~-~gv~-iprfcyh~rlsvagncrmclveveks-p-------kpva~cam 95 (708)
T KOG2282|consen 30 PNKIEVFVDDQSV----MVEPGTTVLQACAK-VGVD-IPRFCYHERLSVAGNCRMCLVEVEKS-P-------KPVAACAM 95 (708)
T ss_pred ccceEEEECCeeE----eeCCCcHHHHHHHH-hCCC-cchhhhhhhhhhccceeEEEEEeccC-C-------Ccchhhcc
Confidence 3578999999875 46899999998654 3442 222242 58899999999774 2 28999999
Q ss_pred hhhhcCCCeEEEEcCCCCCCCCccHHHHHHHHcCCCccccCCCCcccc
Q psy7831 86 YVQMCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMA 133 (206)
Q Consensus 86 ~~~~~~g~~I~TvEgL~~~~~~~~~vq~a~~~~~~~QCG~Ct~~~~~~ 133 (206)
|+- .|+.|.|=-.+... .-.-|.+-+.-.|-.-|..|-.|--|-
T Consensus 96 pvm--~g~~iktns~~~kk--aregvmefll~nhpldcpicdqggecd 139 (708)
T KOG2282|consen 96 PVM--KGWKIKTNSDKSKK--AREGVMEFLLMNHPLDCPICDQGGECD 139 (708)
T ss_pred ccc--CCceeecCchHHHH--HHHHHHHHHHhCCCCCCCccCCCCcCc
Confidence 874 79999886666542 234466677788999999999666664
No 63
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=91.88 E-value=0.059 Score=45.82 Aligned_cols=49 Identities=18% Similarity=0.250 Sum_probs=30.5
Q ss_pred cCCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHhcCCcccCCC
Q psy7831 118 MNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTG 179 (206)
Q Consensus 118 ~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al~gnlCRCtg 179 (206)
.++.|||+|| ++||+++- -+|- |=-++-. ...+ +.+ ..-++.-+++|+.
T Consensus 39 ~~C~QCG~CT--~sCPs~r~-t~y~-pR~ii~~---~~~g-----~~d-~il~~~~lW~C~t 87 (195)
T COG1150 39 EGCYQCGTCT--GSCPSGRF-TDYS-PRKIIRK---ARLG-----LVD-LILSSESLWACVT 87 (195)
T ss_pred hHhhccCccc--CCCCCccc-CCCC-HHHHHHH---HHcc-----cHH-HHhcCCcceeeee
Confidence 3599999999 99999987 5554 4433322 1111 122 3455667788765
No 64
>PRK07440 hypothetical protein; Provisional
Probab=90.57 E-value=1.5 Score=31.03 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=30.7
Q ss_pred CceEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccc
Q psy7831 12 GKEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSR 68 (206)
Q Consensus 12 ~~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~ 68 (206)
+..+.++|||+++++ ..++||.++|++ +++.. -.-+|.+||.
T Consensus 2 ~~~m~i~vNG~~~~~----~~~~tl~~lL~~-l~~~~----------~~vav~~N~~ 43 (70)
T PRK07440 2 SNPITLQVNGETRTC----SSGTSLPDLLQQ-LGFNP----------RLVAVEYNGE 43 (70)
T ss_pred CCceEEEECCEEEEc----CCCCCHHHHHHH-cCCCC----------CeEEEEECCE
Confidence 446889999998655 567899999986 45522 1348888997
No 65
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=89.32 E-value=2.3 Score=30.22 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=31.2
Q ss_pred ceEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccc
Q psy7831 13 KEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSR 68 (206)
Q Consensus 13 ~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~ 68 (206)
|.+++.+||+++++ +.++|+.|.|.+ +++.. -...|.+||.
T Consensus 1 ~~m~i~~ng~~~e~----~~~~tv~dLL~~-l~~~~----------~~vav~vNg~ 41 (68)
T COG2104 1 MPMTIQLNGKEVEI----AEGTTVADLLAQ-LGLNP----------EGVAVAVNGE 41 (68)
T ss_pred CcEEEEECCEEEEc----CCCCcHHHHHHH-hCCCC----------ceEEEEECCE
Confidence 45788999998765 444999999987 56644 2458999997
No 66
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=88.65 E-value=3.1 Score=29.16 Aligned_cols=42 Identities=12% Similarity=0.279 Sum_probs=31.8
Q ss_pred eEEEEECCE--EEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccc
Q psy7831 14 EVKFALNEK--FYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSR 68 (206)
Q Consensus 14 ~i~f~vNG~--~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~ 68 (206)
++++++||+ +.++ +.++++|+.+.|+. +++.. -...|.+||.
T Consensus 4 mm~v~vng~~~~~~~--~~~~~~tv~~ll~~-l~~~~----------~~v~v~vNg~ 47 (70)
T PRK08364 4 MIRVKVIGRGIEKEI--EWRKGMKVADILRA-VGFNT----------ESAIAKVNGK 47 (70)
T ss_pred EEEEEEeccccceEE--EcCCCCcHHHHHHH-cCCCC----------ccEEEEECCE
Confidence 378899999 4455 56788999999976 55532 2378999998
No 67
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=87.72 E-value=0.22 Score=42.71 Aligned_cols=26 Identities=23% Similarity=0.676 Sum_probs=21.8
Q ss_pred CcccCCCCCccceEEEEccccCCCcccccccccchh
Q psy7831 49 TKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACL 84 (206)
Q Consensus 49 ~K~gC~eG~CGACtVlVdG~~~~~~~~~~~~v~sCl 84 (206)
-...|+.|.||+|.|.++|. ++.+|.
T Consensus 213 ~~m~cg~G~C~~C~~~~~~~----------~~~~C~ 238 (250)
T PRK00054 213 RRMKCGIGACGACVCDTETG----------GKRVCK 238 (250)
T ss_pred ccccCcCcccCcCCcccCCC----------CEEEeC
Confidence 36789999999999999886 567774
No 68
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=86.75 E-value=2.7 Score=28.68 Aligned_cols=38 Identities=24% Similarity=0.419 Sum_probs=27.3
Q ss_pred EEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccc
Q psy7831 16 KFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSR 68 (206)
Q Consensus 16 ~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~ 68 (206)
+++|||+.+++ +.+.||.++|.. +++...+. .|.+||.
T Consensus 2 ~i~vNG~~~~~----~~~~tl~~lL~~-l~~~~~~v----------av~vNg~ 39 (66)
T PRK05659 2 NIQLNGEPREL----PDGESVAALLAR-EGLAGRRV----------AVEVNGE 39 (66)
T ss_pred EEEECCeEEEc----CCCCCHHHHHHh-cCCCCCeE----------EEEECCe
Confidence 58999998765 457899999976 55543322 5888985
No 69
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=85.74 E-value=2.6 Score=29.08 Aligned_cols=38 Identities=5% Similarity=0.193 Sum_probs=28.0
Q ss_pred EEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccc
Q psy7831 16 KFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSR 68 (206)
Q Consensus 16 ~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~ 68 (206)
.++|||+++++ +.+.||.+.|.. +++... .++|.+|+.
T Consensus 2 ~i~vNg~~~~~----~~~~tl~~ll~~-l~~~~~----------~vaVavN~~ 39 (66)
T PRK08053 2 QILFNDQPMQC----AAGQTVHELLEQ-LNQLQP----------GAALAINQQ 39 (66)
T ss_pred EEEECCeEEEc----CCCCCHHHHHHH-cCCCCC----------cEEEEECCE
Confidence 57999998765 457899999975 444321 278999997
No 70
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=84.77 E-value=1.4 Score=39.64 Aligned_cols=52 Identities=23% Similarity=0.424 Sum_probs=35.9
Q ss_pred HHcCCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHhc
Q psy7831 116 ALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALG 171 (206)
Q Consensus 116 ~~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al~ 171 (206)
....+.+||+|+ ++||+..+...+...|.+..+...++... +..+++.+++.
T Consensus 7 ~~~~Cv~Cg~C~--~~CP~~~~~~~~sPrgr~~~~r~~~~~~~--~~~~~~~~~~~ 58 (388)
T COG0247 7 SLDKCVHCGFCT--NVCPSYRATEALSPRGRIVLVREVLRGKA--PGDEEVYEALD 58 (388)
T ss_pred HHHhcCCCCccc--CcCCCccccCCCCCchHHHHHHHHHhCCC--cchhhhHHHHH
Confidence 345789999999 89999988855555666666666665443 34555656653
No 71
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=84.58 E-value=5.2 Score=29.46 Aligned_cols=41 Identities=15% Similarity=0.304 Sum_probs=30.4
Q ss_pred ceEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccc
Q psy7831 13 KEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSR 68 (206)
Q Consensus 13 ~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~ 68 (206)
+.+.++|||+.+++ +.+.||.++|.. +++.. -..+|.+||.
T Consensus 17 ~~m~I~VNG~~~~~----~~~~tl~~LL~~-l~~~~----------~~vAVevNg~ 57 (84)
T PRK06083 17 VLITISINDQSIQV----DISSSLAQIIAQ-LSLPE----------LGCVFAINNQ 57 (84)
T ss_pred ceEEEEECCeEEEc----CCCCcHHHHHHH-cCCCC----------ceEEEEECCE
Confidence 46889999998765 457899999976 45432 1348899997
No 72
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=83.67 E-value=4.4 Score=27.67 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=27.5
Q ss_pred EEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccc
Q psy7831 17 FALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSR 68 (206)
Q Consensus 17 f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~ 68 (206)
++|||+.+++ +.++|+.++|.. +++.. ....|.+||+
T Consensus 1 i~iNg~~~~~----~~~~tv~~ll~~-l~~~~----------~~v~v~vN~~ 37 (64)
T TIGR01683 1 ITVNGEPVEV----EDGLTLAALLES-LGLDP----------RRVAVAVNGE 37 (64)
T ss_pred CEECCeEEEc----CCCCcHHHHHHH-cCCCC----------CeEEEEECCE
Confidence 4799998765 457899999986 55431 4468999997
No 73
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=83.06 E-value=0.71 Score=39.15 Aligned_cols=20 Identities=35% Similarity=0.750 Sum_probs=17.5
Q ss_pred CcccCCCCCccceEEEEccc
Q psy7831 49 TKYMCREGGCGVCTVMVKSR 68 (206)
Q Consensus 49 ~K~gC~eG~CGACtVlVdG~ 68 (206)
.+..|+.|.||+|+|..++.
T Consensus 212 ~~m~Cg~G~C~~C~~~~~~~ 231 (243)
T cd06192 212 SPMCCGIGICGACTIETKHG 231 (243)
T ss_pred ccccCccccccceEEEeCCC
Confidence 47889999999999998765
No 74
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=81.87 E-value=1.8 Score=39.74 Aligned_cols=37 Identities=14% Similarity=0.292 Sum_probs=26.5
Q ss_pred cCCCccccCCCCcccccccc-ccCCCCchH-HHHHHHHHHh
Q psy7831 118 MNGTQCGYCSPGMVMAMHRT-QCGYCSPGM-VMAMHSFLME 156 (206)
Q Consensus 118 ~~~~QCG~Ct~~~~~~~~~~-~~~~~~PG~-vm~~~~ll~~ 156 (206)
..+++||+|+ .+||+.++ +.++.||.- +..+..+++.
T Consensus 23 ~~C~~Cg~C~--~~CP~~~~~~~~~~~p~g~~~~~~~~~~~ 61 (407)
T PRK11274 23 RKCVHCGFCT--ATCPTYQLLGDELDGPRGRIYLIKQVLEG 61 (407)
T ss_pred HhCccCCCcc--ccCCcccccCCcccChhHHHHHHHHHhcc
Confidence 4799999999 89998854 556888744 4444455543
No 75
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=80.02 E-value=5.8 Score=27.09 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=27.5
Q ss_pred EEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccc
Q psy7831 17 FALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSR 68 (206)
Q Consensus 17 f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~ 68 (206)
++|||+.+++ +.++|+.+.|.. +++.. ..+.|.+||+
T Consensus 2 i~iNg~~~~~----~~~~tv~~ll~~-l~~~~----------~~i~V~vNg~ 38 (65)
T cd00565 2 ITVNGEPREV----EEGATLAELLEE-LGLDP----------RGVAVALNGE 38 (65)
T ss_pred EEECCeEEEc----CCCCCHHHHHHH-cCCCC----------CcEEEEECCE
Confidence 7899998765 457899999876 55431 3468899998
No 76
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=79.28 E-value=9.2 Score=26.60 Aligned_cols=38 Identities=13% Similarity=0.271 Sum_probs=27.2
Q ss_pred EEEECCEEEEEeecCCCC-CcHHHHHHhhcCCCCCcccCCCCCccceEEEEccc
Q psy7831 16 KFALNEKFYTVGEDVPVG-TRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSR 68 (206)
Q Consensus 16 ~f~vNG~~~~v~~~~~p~-~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~ 68 (206)
.++|||+.+++ +.+ .||.++|.. +++..- ..+|.+|+.
T Consensus 2 ~I~vNG~~~~~----~~~~~tv~~lL~~-l~~~~~----------~vav~vN~~ 40 (67)
T PRK07696 2 NLKINGNQIEV----PESVKTVAELLTH-LELDNK----------IVVVERNKD 40 (67)
T ss_pred EEEECCEEEEc----CCCcccHHHHHHH-cCCCCC----------eEEEEECCE
Confidence 57899998876 233 689999976 555322 348899997
No 77
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=76.85 E-value=3.2 Score=38.00 Aligned_cols=73 Identities=25% Similarity=0.347 Sum_probs=49.4
Q ss_pred ceEEEEECCE-EEEEeecCCCCCcHHHHHHhhcCCCCCcccCC-CCCccceEEEE--ccccC-CCcccc-------cccc
Q psy7831 13 KEVKFALNEK-FYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCR-EGGCGVCTVMV--KSRHP-VTKELL-------VYSV 80 (206)
Q Consensus 13 ~~i~f~vNG~-~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~-eG~CGACtVlV--dG~~~-~~~~~~-------~~~v 80 (206)
-.+++.|||- +.+. .++++.+||..|... |+ -+...|+ .|.||-|.|.| +|-++ .++.+. .--.
T Consensus 35 gd~ti~IN~d~e~~~--t~~aG~kLL~~L~~~-gi-fi~SaCGGggsC~QCkv~v~~ggge~LpTe~sh~skrea~eG~R 110 (410)
T COG2871 35 GDITIKINGDPEKTK--TVPAGGKLLGALASS-GI-FISSACGGGGSCGQCKVRVKKGGGEILPTELSHISKREAKEGWR 110 (410)
T ss_pred CceEEEeCCChhhce--ecCCchhHHHHHHhC-Cc-ccccCCCCCccccccEEEEecCCCccCcchhhhhhhhhhhccce
Confidence 4688999993 3444 689999999999763 54 4667786 67899999999 33332 232221 1236
Q ss_pred cchhhhhhh
Q psy7831 81 NACLVYVQM 89 (206)
Q Consensus 81 ~sCl~~~~~ 89 (206)
+||++.+..
T Consensus 111 LsCQ~~Vk~ 119 (410)
T COG2871 111 LSCQVNVKH 119 (410)
T ss_pred EEEEecccc
Confidence 889888753
No 78
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=75.13 E-value=1.9 Score=28.70 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=18.8
Q ss_pred CCccccCCCCccccccccccCCCCchHHHHHHHH
Q psy7831 120 GTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSF 153 (206)
Q Consensus 120 ~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~l 153 (206)
..|||||. .+||++..-..+ |..++..+.+
T Consensus 2 C~~Cg~C~--~~CP~~~~~~~~--~~~~~~~~~~ 31 (61)
T PF13534_consen 2 CTQCGYCV--PACPSYIATPDE--PRSPMRAIYL 31 (61)
T ss_dssp ----STTG--GGSHHHHHCTTT--HHHHHHHHHH
T ss_pred CCCCCcCc--ccCCCccccCcc--HHHHHHHHHH
Confidence 57999999 789998765444 6666665544
No 79
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=75.04 E-value=1.3 Score=35.28 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=14.9
Q ss_pred CCCccccCCCCcccccccc
Q psy7831 119 NGTQCGYCSPGMVMAMHRT 137 (206)
Q Consensus 119 ~~~QCG~Ct~~~~~~~~~~ 137 (206)
.++|||.|+ ++||+...
T Consensus 3 ~Ci~CG~C~--~~CP~~~~ 19 (144)
T TIGR03290 3 ACYQCGTCT--GSCPSGRR 19 (144)
T ss_pred cccCCCCCc--CcCCCccc
Confidence 578999999 99999754
No 80
>PRK06437 hypothetical protein; Provisional
Probab=74.33 E-value=15 Score=25.62 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=28.7
Q ss_pred EEEEECCE-EEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccc
Q psy7831 15 VKFALNEK-FYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSR 68 (206)
Q Consensus 15 i~f~vNG~-~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~ 68 (206)
--++|||- ..++ +.+.+.|+.+.|++ +++..- ...|.+||.
T Consensus 3 ~~~~v~g~~~~~~--~i~~~~tv~dLL~~-Lgi~~~----------~vaV~vNg~ 44 (67)
T PRK06437 3 AMIRVKGHINKTI--EIDHELTVNDIIKD-LGLDEE----------EYVVIVNGS 44 (67)
T ss_pred ceEEecCCcceEE--EcCCCCcHHHHHHH-cCCCCc----------cEEEEECCE
Confidence 35789992 2344 56788999999986 666422 248889998
No 81
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=73.75 E-value=5.8 Score=27.35 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=28.1
Q ss_pred EEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccc
Q psy7831 16 KFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSR 68 (206)
Q Consensus 16 ~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~ 68 (206)
.++|||+++++ ++++||.++|.. +++..- ..+|.+|+.
T Consensus 2 ~i~vNG~~~~~----~~~~tl~~ll~~-l~~~~~----------~vav~~N~~ 39 (65)
T PRK05863 2 IVVVNEEQVEV----DEQTTVAALLDS-LGFPEK----------GIAVAVDWS 39 (65)
T ss_pred EEEECCEEEEc----CCCCcHHHHHHH-cCCCCC----------cEEEEECCc
Confidence 57999998765 457899999986 555322 248888886
No 82
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=70.60 E-value=5.5 Score=38.85 Aligned_cols=75 Identities=27% Similarity=0.337 Sum_probs=49.9
Q ss_pred eEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCC-CCCccceEEEEccccCCCcccc--------cccccchh
Q psy7831 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCR-EGGCGVCTVMVKSRHPVTKELL--------VYSVNACL 84 (206)
Q Consensus 14 ~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~-eG~CGACtVlVdG~~~~~~~~~--------~~~v~sCl 84 (206)
.++|.-.|++. + +.++|+||.-|+ +|. .++.-|+ .|.||.|.|.|...++.--.++ .--.+||.
T Consensus 3 ~v~f~psgkr~----~-~~g~~il~aar~-~gv-~i~s~cggk~~cgkc~v~v~~g~~~i~s~~dh~k~~~~~g~rlac~ 75 (614)
T COG3894 3 LVTFMPSGKRG----E-DEGTTILDAARR-LGV-YIRSVCGGKGTCGKCQVVVQEGNHKIVSSTDHEKYLRERGYRLACQ 75 (614)
T ss_pred eeEeecCCCcC----C-CCCchHHHHHHh-hCc-eEeeecCCCccccceEEEEEeCCceeccchhHHHHHHhhceeeeee
Confidence 36777788752 3 789999999987 565 7899996 8999999999944333211111 11357887
Q ss_pred hhhhhcCCCeEEEE
Q psy7831 85 VYVQMCNGWSIYTI 98 (206)
Q Consensus 85 ~~~~~~~g~~I~Tv 98 (206)
..+. |.-++-|
T Consensus 76 ~~v~---gd~~i~i 86 (614)
T COG3894 76 AQVL---GDLVIFI 86 (614)
T ss_pred hhhc---CceEEEc
Confidence 6553 5554444
No 83
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=70.31 E-value=2.7 Score=35.98 Aligned_cols=19 Identities=32% Similarity=0.583 Sum_probs=16.9
Q ss_pred CcccCCCCCccceEEEEcc
Q psy7831 49 TKYMCREGGCGVCTVMVKS 67 (206)
Q Consensus 49 ~K~gC~eG~CGACtVlVdG 67 (206)
.+..|+.|.||+|+|..+|
T Consensus 212 ~~m~Cg~G~C~~C~~~~~~ 230 (248)
T cd06219 212 PIMVDGTGMCGACRVTVGG 230 (248)
T ss_pred ccccCccceeeeEEEEeCC
Confidence 4788999999999998766
No 84
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=68.58 E-value=2.9 Score=38.05 Aligned_cols=28 Identities=18% Similarity=0.327 Sum_probs=24.5
Q ss_pred cCCCccccCCCCccccccccccCCCCchHH
Q psy7831 118 MNGTQCGYCSPGMVMAMHRTQCGYCSPGMV 147 (206)
Q Consensus 118 ~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~v 147 (206)
..++.||.|+ .+||+.+....|.||-.+
T Consensus 7 ~~Ci~Cg~C~--~~CP~~~~~~~~~g~~~~ 34 (396)
T PRK11168 7 DSCIKCTVCT--TACPVARVNPLYPGPKQA 34 (396)
T ss_pred hhcCCCCCCC--ccCCCcccCCCCCChhhh
Confidence 4689999999 999999988889888654
No 85
>KOG3309|consensus
Probab=68.35 E-value=15 Score=30.37 Aligned_cols=78 Identities=21% Similarity=0.369 Sum_probs=51.5
Q ss_pred eEEEE-ECCEEEEEeecCCCCCcHHHHHHhh-cCCCCCcccCC-CCCccceEEEEccccC------CCc---------cc
Q psy7831 14 EVKFA-LNEKFYTVGEDVPVGTRLVDFIRDV-AGLKGTKYMCR-EGGCGVCTVMVKSRHP------VTK---------EL 75 (206)
Q Consensus 14 ~i~f~-vNG~~~~v~~~~~p~~tLLd~LR~~-~~l~g~K~gC~-eG~CGACtVlVdG~~~------~~~---------~~ 75 (206)
.|+|. -+|++..+ ...-|++||+++.++ +.+.| .|. .=.|-.|-|.|+-... ... ..
T Consensus 45 ~Itfv~~dG~~~~i--~g~vGdtlLd~ah~n~idleG---ACEgslACSTCHViv~~~~yekl~ep~DeE~DmLDlA~gL 119 (159)
T KOG3309|consen 45 KITFVDPDGEEIKI--KGKVGDTLLDAAHENNLDLEG---ACEGSLACSTCHVIVDEEYYEKLPEPEDEENDMLDLAFGL 119 (159)
T ss_pred EEEEECCCCCEEEe--eeecchHHHHHHHHcCCCccc---cccccccccceEEEEcHHHHhcCCCCcchHHHHHHhhhcc
Confidence 34433 38898888 799999999999764 55666 675 4478899999964311 110 13
Q ss_pred ccccccchhhhhhh-cCCCeEE
Q psy7831 76 LVYSVNACLVYVQM-CNGWSIY 96 (206)
Q Consensus 76 ~~~~v~sCl~~~~~-~~g~~I~ 96 (206)
+..+.+-|++.+.+ ++|..|.
T Consensus 120 t~tSRLGCQI~l~keldG~~v~ 141 (159)
T KOG3309|consen 120 TETSRLGCQIVLTKELDGMRVA 141 (159)
T ss_pred ccccccceEEEeccccCCcEEE
Confidence 34567788776654 6666554
No 86
>PRK05802 hypothetical protein; Provisional
Probab=67.25 E-value=3 Score=37.62 Aligned_cols=21 Identities=43% Similarity=0.825 Sum_probs=18.1
Q ss_pred CCcccCCCCCccceEEEEccc
Q psy7831 48 GTKYMCREGGCGVCTVMVKSR 68 (206)
Q Consensus 48 g~K~gC~eG~CGACtVlVdG~ 68 (206)
-.+-.|+.|.||+|+|..+|.
T Consensus 287 e~~M~CG~G~Cg~C~v~~~g~ 307 (320)
T PRK05802 287 NAKMCCGEGICGACTVRYGGH 307 (320)
T ss_pred CCeeeCcCccCCeeEEEECCE
Confidence 458889999999999998763
No 87
>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []. The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.
Probab=66.37 E-value=3.7 Score=26.14 Aligned_cols=19 Identities=42% Similarity=0.892 Sum_probs=14.1
Q ss_pred cccCCCCCccceEEEEccc
Q psy7831 50 KYMCREGGCGVCTVMVKSR 68 (206)
Q Consensus 50 K~gC~eG~CGACtVlVdG~ 68 (206)
+-.|+-|.|++|.|-..+.
T Consensus 3 ~M~CG~G~C~~C~v~~~~~ 21 (40)
T PF10418_consen 3 RMACGVGACGGCVVPVKDG 21 (40)
T ss_dssp --SSSSSSS-TTEEECSST
T ss_pred cccCCCcEeCCcEeeeecC
Confidence 5679999999999998653
No 88
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=63.06 E-value=4.1 Score=34.82 Aligned_cols=17 Identities=35% Similarity=0.729 Sum_probs=15.5
Q ss_pred cccCCCCCccceEEEEc
Q psy7831 50 KYMCREGGCGVCTVMVK 66 (206)
Q Consensus 50 K~gC~eG~CGACtVlVd 66 (206)
+.-|++|.||+|.+..+
T Consensus 213 ~~~~~~g~c~~c~~~~~ 229 (246)
T cd06218 213 RMACGIGACLGCVVKTK 229 (246)
T ss_pred cccCccceecccEEEee
Confidence 66799999999999997
No 89
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=62.93 E-value=3.8 Score=34.58 Aligned_cols=19 Identities=26% Similarity=0.543 Sum_probs=16.3
Q ss_pred cccCCCCCccceEEEEccc
Q psy7831 50 KYMCREGGCGVCTVMVKSR 68 (206)
Q Consensus 50 K~gC~eG~CGACtVlVdG~ 68 (206)
...|+.|.||+|.|..+|+
T Consensus 200 f~~cg~g~C~~C~v~~~~~ 218 (233)
T cd06220 200 YMKCGIGICGSCCIDPTGL 218 (233)
T ss_pred cccCcCCCcCccEeccCCe
Confidence 4679999999999998763
No 90
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=62.06 E-value=4.4 Score=37.11 Aligned_cols=27 Identities=15% Similarity=0.346 Sum_probs=23.0
Q ss_pred cCCCccccCCCCccccccccccCCCCchH
Q psy7831 118 MNGTQCGYCSPGMVMAMHRTQCGYCSPGM 146 (206)
Q Consensus 118 ~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~ 146 (206)
..++.||.|+ .+||+.+....|-||-.
T Consensus 5 ~~Ci~Cg~C~--~~Cp~~~~~~~~~g~~~ 31 (397)
T TIGR03379 5 ESCIKCTVCT--VYCPVAKANPLYPGPKQ 31 (397)
T ss_pred hhCCCCCCCc--ccCcCccccCCccCccc
Confidence 4689999999 99999988888877754
No 91
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=61.67 E-value=12 Score=25.29 Aligned_cols=37 Identities=22% Similarity=0.376 Sum_probs=26.9
Q ss_pred EEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccc
Q psy7831 16 KFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSR 68 (206)
Q Consensus 16 ~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~ 68 (206)
.++|||+.+++ +++.||.++|.. +++. + .-.|.+||.
T Consensus 2 ~i~vNg~~~~~----~~~~tl~~ll~~-l~~~--~---------~~~v~vN~~ 38 (65)
T PRK06944 2 DIQLNQQTLSL----PDGATVADALAA-YGAR--P---------PFAVAVNGD 38 (65)
T ss_pred EEEECCEEEEC----CCCCcHHHHHHh-hCCC--C---------CeEEEECCE
Confidence 57999998754 467899999975 4442 1 147899997
No 92
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=60.09 E-value=3.7 Score=35.58 Aligned_cols=18 Identities=33% Similarity=0.757 Sum_probs=15.1
Q ss_pred CCCcccCCCCCccceEEE
Q psy7831 47 KGTKYMCREGGCGVCTVM 64 (206)
Q Consensus 47 ~g~K~gC~eG~CGACtVl 64 (206)
...+..|+.|.||+|.|.
T Consensus 223 ~~~~m~cg~g~c~~c~~~ 240 (261)
T TIGR02911 223 YERKMCCGVGKCGHCKID 240 (261)
T ss_pred eccceeccCcCCCCcccC
Confidence 346888999999999875
No 93
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=58.03 E-value=16 Score=25.78 Aligned_cols=28 Identities=14% Similarity=0.108 Sum_probs=23.5
Q ss_pred ceEEEEECCEEEEEeecCCCCCcHHHHHHh
Q psy7831 13 KEVKFALNEKFYTVGEDVPVGTRLVDFIRD 42 (206)
Q Consensus 13 ~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~ 42 (206)
+.|.+..+|+.|++ +++++.|+.++=+.
T Consensus 1 ~~i~vk~~g~~~~v--~v~~~~Tv~~lK~~ 28 (74)
T cd01813 1 VPVIVKWGGQEYSV--TTLSEDTVLDLKQF 28 (74)
T ss_pred CEEEEEECCEEEEE--EECCCCCHHHHHHH
Confidence 35788999999999 89999999986443
No 94
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=54.59 E-value=4.8 Score=34.89 Aligned_cols=17 Identities=35% Similarity=0.843 Sum_probs=14.6
Q ss_pred CCcccCCCCCccceEEE
Q psy7831 48 GTKYMCREGGCGVCTVM 64 (206)
Q Consensus 48 g~K~gC~eG~CGACtVl 64 (206)
..+-.|+.|.||+|+|.
T Consensus 226 ~~~m~cg~g~c~~c~~~ 242 (263)
T PRK08221 226 ERKMCCGVGKCGHCKID 242 (263)
T ss_pred cceeEccCcccCCcccC
Confidence 35778999999999985
No 95
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=54.53 E-value=4.7 Score=35.46 Aligned_cols=20 Identities=30% Similarity=0.693 Sum_probs=17.4
Q ss_pred CCcccCCCCCccceEEEEcc
Q psy7831 48 GTKYMCREGGCGVCTVMVKS 67 (206)
Q Consensus 48 g~K~gC~eG~CGACtVlVdG 67 (206)
..+..|+-|.||+|+|..++
T Consensus 246 ~~~m~cg~g~c~~c~~~~~~ 265 (289)
T PRK08345 246 ERRMRCGIGKCGHCIVGTST 265 (289)
T ss_pred hhcccccCcccCCCccCCCC
Confidence 36889999999999998765
No 96
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=52.41 E-value=9.7 Score=27.25 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=22.0
Q ss_pred EEECCEEEEEeecCCCCCcHHHHHHhhc
Q psy7831 17 FALNEKFYTVGEDVPVGTRLVDFIRDVA 44 (206)
Q Consensus 17 f~vNG~~~~v~~~~~p~~tLLd~LR~~~ 44 (206)
+.-||+...| .+.|++|+.|+|....
T Consensus 5 ~LPng~~t~V--~vrpg~ti~d~L~~~c 30 (72)
T cd01760 5 YLPNGQRTVV--PVRPGMSVRDVLAKAC 30 (72)
T ss_pred ECcCCCeEEE--EECCCCCHHHHHHHHH
Confidence 4569999999 8999999999997643
No 97
>smart00455 RBD Raf-like Ras-binding domain.
Probab=49.81 E-value=9.7 Score=26.91 Aligned_cols=26 Identities=15% Similarity=0.141 Sum_probs=22.1
Q ss_pred EEECCEEEEEeecCCCCCcHHHHHHhhc
Q psy7831 17 FALNEKFYTVGEDVPVGTRLVDFIRDVA 44 (206)
Q Consensus 17 f~vNG~~~~v~~~~~p~~tLLd~LR~~~ 44 (206)
+.-||+...| .+.|++|+.|+|+..+
T Consensus 5 ~LP~~~~~~V--~vrpg~tl~e~L~~~~ 30 (70)
T smart00455 5 HLPDNQRTVV--KVRPGKTVRDALAKAL 30 (70)
T ss_pred ECCCCCEEEE--EECCCCCHHHHHHHHH
Confidence 4459999999 8999999999998754
No 98
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=49.71 E-value=50 Score=30.41 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=28.4
Q ss_pred EEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEcccc
Q psy7831 16 KFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRH 69 (206)
Q Consensus 16 ~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~~ 69 (206)
.++|||+.+++ +.+.||.++|.+ +++..- ...|.|||.-
T Consensus 2 ~I~VNGk~~el----~e~~TL~dLL~~-L~i~~~----------~VAVeVNgeI 40 (326)
T PRK11840 2 RIRLNGEPRQV----PAGLTIAALLAE-LGLAPK----------KVAVERNLEI 40 (326)
T ss_pred EEEECCEEEec----CCCCcHHHHHHH-cCCCCC----------eEEEEECCEE
Confidence 57999998755 467899999986 555321 3488899983
No 99
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=49.58 E-value=15 Score=26.95 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=20.8
Q ss_pred EEECCEEEEEeecCCCCCcHHHHHHh
Q psy7831 17 FALNEKFYTVGEDVPVGTRLVDFIRD 42 (206)
Q Consensus 17 f~vNG~~~~v~~~~~p~~tLLd~LR~ 42 (206)
..-||+.+.+ .+.|++|++|+|..
T Consensus 5 ~lPn~~~~~v--~vrp~~tv~dvLe~ 28 (77)
T cd01818 5 CLPDNQPVLT--YLRPGMSVEDFLES 28 (77)
T ss_pred ECCCCceEEE--EECCCCCHHHHHHH
Confidence 3459999999 89999999999965
No 100
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=46.79 E-value=27 Score=23.69 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=26.1
Q ss_pred EEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccc
Q psy7831 16 KFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSR 68 (206)
Q Consensus 16 ~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~ 68 (206)
+++|||+.+++ + ..||.+.|.. +++.. ....|.+|+.
T Consensus 2 ~i~~Ng~~~~~--~---~~tl~~Ll~~-l~~~~----------~~vavavN~~ 38 (65)
T PRK06488 2 KLFVNGETLQT--E---ATTLALLLAE-LDYEG----------NWLATAVNGE 38 (65)
T ss_pred EEEECCeEEEc--C---cCcHHHHHHH-cCCCC----------CeEEEEECCE
Confidence 57899998876 2 3589988876 44422 1347899997
No 101
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=45.91 E-value=23 Score=24.85 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=17.4
Q ss_pred EEECCEEEEEeecCCCCCcHHHHHHhh
Q psy7831 17 FALNEKFYTVGEDVPVGTRLVDFIRDV 43 (206)
Q Consensus 17 f~vNG~~~~v~~~~~p~~tLLd~LR~~ 43 (206)
+.-|++++.+ .+.|+++|.++|.+-
T Consensus 2 i~~~~rr~~v--kvtp~~~l~~VL~ea 26 (65)
T PF11470_consen 2 ICYNFRRFKV--KVTPNTTLNQVLEEA 26 (65)
T ss_dssp E-TTS-EEEE-----TTSBHHHHHHHH
T ss_pred CccCCcEEEE--EECCCCCHHHHHHHH
Confidence 4568899999 899999999999874
No 102
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=45.59 E-value=11 Score=35.70 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=22.7
Q ss_pred HcCCCccccCCCCcccccccc------ccCCCCchHH
Q psy7831 117 LMNGTQCGYCSPGMVMAMHRT------QCGYCSPGMV 147 (206)
Q Consensus 117 ~~~~~QCG~Ct~~~~~~~~~~------~~~~~~PG~v 147 (206)
...+++||.|. .+||+.+. +..|.||--.
T Consensus 292 ~~~CIrCG~C~--~~CPvy~~~g~~~~~~~~~Gp~G~ 326 (432)
T TIGR00273 292 VLACIRCGACQ--NECPVYRHIGGHWYGSIYPGPIGA 326 (432)
T ss_pred HhhCCCCCCcc--ccCcchhccCccccccccCChHHH
Confidence 56899999999 99998754 3458888633
No 103
>PRK11278 NADH dehydrogenase I subunit F; Provisional
Probab=44.47 E-value=48 Score=31.72 Aligned_cols=79 Identities=15% Similarity=0.178 Sum_probs=45.3
Q ss_pred ccHHHHHHHHcCCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHH--HHhcCC----cccCCCC-
Q psy7831 108 YHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVE--RALGGN----ICRCTGY- 180 (206)
Q Consensus 108 ~~~vq~a~~~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~--~al~gn----lCRCtgy- 180 (206)
...+.+-|+++.+-||..|+ ...|-+.-.+.++... .-++++++ ..+..+ -..|.-=
T Consensus 342 ~~~~~~F~A~ESCGQCtPCR-------------eGtprl~~il~~i~~G---~~~~~dl~~L~~l~~~m~~~~s~C~lg~ 405 (448)
T PRK11278 342 VRNLEEFFARESCGWCTPCR-------------DGLPWSVKILRALERG---EGQPGDIETLEQLCRFLGPGKTFCAHAP 405 (448)
T ss_pred HHHHHHHhhcccCCCCCChH-------------hhHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhcCCCccCcCcH
Confidence 56666777888999999999 2223333333333332 22344442 223222 3446543
Q ss_pred ---HHHHHHHHHHHHhhchhhhhhc
Q psy7831 181 ---RPILDTFQSFATDACDRVRQKC 202 (206)
Q Consensus 181 ---~~i~~a~~~~a~~~~~~~~~~~ 202 (206)
.+++.+++.|..+-...+.+++
T Consensus 406 ~A~~pv~s~l~~F~~ef~~hi~~~~ 430 (448)
T PRK11278 406 GAVEPLQSAIKYFREEFEAGIKQPF 430 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6888899999887766655544
No 104
>PF03990 DUF348: Domain of unknown function (DUF348) ; InterPro: IPR007137 This domain normally occurs as tandem repeats; however it is found as a single copy in the Saccharomyces cerevisiae (Baker's yeast) DNA-binding nuclear protein YCR593 (P25357 from SWISSPROT).
Probab=43.56 E-value=55 Score=20.63 Aligned_cols=29 Identities=21% Similarity=0.324 Sum_probs=22.1
Q ss_pred eEEEEECCEEEEEeecCCCCCcHHHHHHhhcCC
Q psy7831 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGL 46 (206)
Q Consensus 14 ~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l 46 (206)
.+++.+||+...+ .....++-++|.+ +++
T Consensus 1 ~Vtv~~dG~~~~v---~T~a~tV~~~L~~-~gI 29 (43)
T PF03990_consen 1 PVTVTVDGKEKTV---YTTASTVGDALKE-LGI 29 (43)
T ss_pred CEEEEECCEEEEE---EeCCCCHHHHHHh-CCC
Confidence 3788999999887 3456689999987 344
No 105
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=42.96 E-value=23 Score=24.93 Aligned_cols=42 Identities=19% Similarity=0.231 Sum_probs=28.0
Q ss_pred EEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEcc
Q psy7831 17 FALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKS 67 (206)
Q Consensus 17 f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG 67 (206)
+.-||+...+ .+.|++|+-|+|..-+...+... -+|.|...|
T Consensus 6 ~LP~~q~t~V--~vrpg~ti~d~L~~~~~kr~L~~-------~~~~V~~~~ 47 (71)
T PF02196_consen 6 HLPNGQRTVV--QVRPGMTIRDALSKACKKRGLNP-------ECCDVRLVG 47 (71)
T ss_dssp EETTTEEEEE--EE-TTSBHHHHHHHHHHTTT--C-------CCEEEEEEE
T ss_pred ECCCCCEEEE--EEcCCCCHHHHHHHHHHHcCCCH-------HHEEEEEcC
Confidence 3449999999 89999999999987543333322 256777654
No 106
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=42.80 E-value=20 Score=37.47 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=17.3
Q ss_pred CCCcccCCCCCccceEEEEcc
Q psy7831 47 KGTKYMCREGGCGVCTVMVKS 67 (206)
Q Consensus 47 ~g~K~gC~eG~CGACtVlVdG 67 (206)
......|+.|.||+|.|.+.|
T Consensus 211 le~~M~cG~G~Cg~C~v~~~~ 231 (1006)
T PRK12775 211 LNAIMVDGTGMCGSCRVTVGG 231 (1006)
T ss_pred ChhheeCccceeCCCEeeeCC
Confidence 345778999999999997765
No 107
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=42.26 E-value=10 Score=32.55 Aligned_cols=17 Identities=29% Similarity=0.811 Sum_probs=14.9
Q ss_pred CCcccCCCCCccceEEE
Q psy7831 48 GTKYMCREGGCGVCTVM 64 (206)
Q Consensus 48 g~K~gC~eG~CGACtVl 64 (206)
..+..|++|.||+|.|.
T Consensus 224 ~~~~~~~~g~c~~c~~~ 240 (253)
T cd06221 224 ERRMKCGVGKCGHCQIG 240 (253)
T ss_pred hhccccCCccccCcccC
Confidence 45778999999999996
No 108
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=40.19 E-value=18 Score=31.66 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=17.7
Q ss_pred CCCcccCCCCCccceEEEEcc
Q psy7831 47 KGTKYMCREGGCGVCTVMVKS 67 (206)
Q Consensus 47 ~g~K~gC~eG~CGACtVlVdG 67 (206)
...+-.|+.|.||.|.|-..|
T Consensus 211 le~~M~CG~G~C~~C~v~~~~ 231 (281)
T PRK06222 211 LNPIMVDGTGMCGACRVTVGG 231 (281)
T ss_pred CcccccCcccccceeEEEECC
Confidence 346888999999999998766
No 109
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=34.53 E-value=7.3 Score=25.33 Aligned_cols=15 Identities=27% Similarity=0.671 Sum_probs=9.9
Q ss_pred cCCCccccCCCCccccc
Q psy7831 118 MNGTQCGYCSPGMVMAM 134 (206)
Q Consensus 118 ~~~~QCG~Ct~~~~~~~ 134 (206)
...++||.|+ .+||+
T Consensus 3 ~~Ci~Cg~C~--~~CP~ 17 (57)
T PF13183_consen 3 SKCIRCGACT--SVCPV 17 (57)
T ss_dssp HC--S-SHHH--HCSHH
T ss_pred HHccCccChH--HHChh
Confidence 3578999999 99983
No 110
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=34.20 E-value=20 Score=33.66 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=16.2
Q ss_pred HHHHHHcCCCccccCCCCcccccc
Q psy7831 112 QSRLALMNGTQCGYCSPGMVMAMH 135 (206)
Q Consensus 112 q~a~~~~~~~QCG~Ct~~~~~~~~ 135 (206)
+......++++|.||.| ||..
T Consensus 287 ~~~~~~v~Ct~C~yC~P---CP~g 307 (391)
T COG1453 287 YRESLKVPCTGCRYCLP---CPSG 307 (391)
T ss_pred HHHHhcCCCccccccCc---CCCC
Confidence 33555788999999997 8844
No 111
>PRK14126 cell division protein ZapA; Provisional
Probab=33.88 E-value=67 Score=23.53 Aligned_cols=30 Identities=7% Similarity=0.045 Sum_probs=20.7
Q ss_pred CCCCCceEEEEECCEEEEEeecCCCCCcHHH
Q psy7831 8 LPKAGKEVKFALNEKFYTVGEDVPVGTRLVD 38 (206)
Q Consensus 8 ~~~~~~~i~f~vNG~~~~v~~~~~p~~tLLd 38 (206)
++..+..+.+.|+|+.|++. ...+...|..
T Consensus 2 ~~~~k~~v~V~I~G~~Y~i~-~~e~ee~l~~ 31 (85)
T PRK14126 2 QKGKKTRINVEIYGQQYTIV-GDESTSHIRM 31 (85)
T ss_pred CCCCCceEEEEECCEEEEec-CCCcHHHHHH
Confidence 34567889999999999994 3333344444
No 112
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=32.27 E-value=24 Score=33.01 Aligned_cols=33 Identities=21% Similarity=0.500 Sum_probs=24.8
Q ss_pred cCCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHH
Q psy7831 118 MNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERA 169 (206)
Q Consensus 118 ~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~a 169 (206)
..+.||++|+ .+||++ |.+- +.+ ..++.|++..
T Consensus 14 ~iC~~C~~C~--~~Cpvf--------Pa~~--------~~~-~~~~~d~~~l 46 (372)
T TIGR02484 14 NLCNSCGYCT--GLCAVF--------PAAQ--------GRP-DLTRGDLRHL 46 (372)
T ss_pred HhCcCcCCcc--ccCCCc--------cccc--------ccc-ccCHHHHHHH
Confidence 5899999999 999999 6652 223 4578888764
No 113
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=31.59 E-value=96 Score=20.71 Aligned_cols=27 Identities=7% Similarity=0.092 Sum_probs=22.3
Q ss_pred eEEEEECCEEEEEeecCCCCCcHHHHHHh
Q psy7831 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRD 42 (206)
Q Consensus 14 ~i~f~vNG~~~~v~~~~~p~~tLLd~LR~ 42 (206)
.|.++-+|+.+++ ++++.+|+.++-+.
T Consensus 2 ~i~vk~~g~~~~i--~v~~~~tv~~lK~~ 28 (71)
T cd01812 2 RVRVKHGGESHDL--SISSQATFGDLKKM 28 (71)
T ss_pred EEEEEECCEEEEE--EECCCCcHHHHHHH
Confidence 5777889999999 89999999887654
No 114
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=30.93 E-value=16 Score=25.55 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=23.2
Q ss_pred CccHHHHHHHHcCCCccccCCCCcccccc
Q psy7831 107 GYHKVQSRLALMNGTQCGYCSPGMVMAMH 135 (206)
Q Consensus 107 ~~~~vq~a~~~~~~~QCG~Ct~~~~~~~~ 135 (206)
.+|++.+..-..+++-||-|. .+||++
T Consensus 39 ~~~k~~~~~~~~~CVgCgrCv--~~CP~~ 65 (69)
T PF13746_consen 39 FMHKLRDRYGEGDCVGCGRCV--RVCPAG 65 (69)
T ss_pred hhhhhhhhcCCccCCCcChHh--hhcCCC
Confidence 478777777789999999999 999976
No 115
>PF15406 PH_6: Pleckstrin homology domain
Probab=30.03 E-value=61 Score=25.36 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=19.5
Q ss_pred CCCCCCCceEEEEECCEEEEEe
Q psy7831 6 DPLPKAGKEVKFALNEKFYTVG 27 (206)
Q Consensus 6 ~p~~~~~~~i~f~vNG~~~~v~ 27 (206)
+|.++.+..+.|++||..++.+
T Consensus 74 e~~~~g~~kF~f~~~G~khtF~ 95 (112)
T PF15406_consen 74 EPEKDGSNKFHFKIKGHKHTFE 95 (112)
T ss_pred ccccCCCceEEEEeCCceeeee
Confidence 6888888999999999999884
No 116
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=29.24 E-value=67 Score=31.43 Aligned_cols=58 Identities=16% Similarity=0.402 Sum_probs=34.6
Q ss_pred CCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHhc---CCccc--CCCCHHHHHHHHH
Q psy7831 119 NGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALG---GNICR--CTGYRPILDTFQS 189 (206)
Q Consensus 119 ~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al~---gnlCR--Ctgy~~i~~a~~~ 189 (206)
-+++||.|. .+|||+-. |..+- ++.... +-++++...+++ =++|- |..+.+.++-++.
T Consensus 366 sCi~C~~C~--d~CP~~Ll------p~ql~---~~a~~~--~~~e~~~~~l~dCIECg~Ca~vCPs~iplvq~~r~ 428 (529)
T COG4656 366 SCIRCSLCA--DACPVNLL------PQQLY---WFAKGE--QHDEEEEHNLLDCIECGACAYVCPSNIPLVQYFRQ 428 (529)
T ss_pred ccccHHHHH--HhCccccC------HHHhh---HHhhhh--hhhHHHHHHhhhhhhhCcchhcCCCCCCHHHHHHH
Confidence 789999999 99998743 54442 222221 334555544443 34553 7777777665543
No 117
>PF14452 Multi_ubiq: Multiubiquitin
Probab=28.61 E-value=1.3e+02 Score=20.75 Aligned_cols=26 Identities=8% Similarity=-0.008 Sum_probs=20.1
Q ss_pred eEEEEECCEEEEEeecCCCCCcHHHHHHh
Q psy7831 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRD 42 (206)
Q Consensus 14 ~i~f~vNG~~~~v~~~~~p~~tLLd~LR~ 42 (206)
.+.|+|||+++++ .++..|-.+.+.-
T Consensus 2 ~~~i~vn~~~~~~---~~~~iTg~qi~~l 27 (72)
T PF14452_consen 2 TFRIIVNGRPYEW---PDPTITGRQILAL 27 (72)
T ss_pred eEEEEECCeEEEE---CCCCcCHHHHHHH
Confidence 4789999999988 5677777776654
No 118
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=28.09 E-value=46 Score=23.83 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=19.7
Q ss_pred EECCEEEEEeecCCCCCcHHHHHHh
Q psy7831 18 ALNEKFYTVGEDVPVGTRLVDFIRD 42 (206)
Q Consensus 18 ~vNG~~~~v~~~~~p~~tLLd~LR~ 42 (206)
.|||+++.| ++++..+|.-+...
T Consensus 2 vVNGqPv~V--EANvnaPLh~v~ak 24 (76)
T PF10790_consen 2 VVNGQPVQV--EANVNAPLHPVRAK 24 (76)
T ss_pred eeCCCceee--ecCCCCcchHHHHH
Confidence 589999999 89999999877644
No 119
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=27.77 E-value=42 Score=24.30 Aligned_cols=43 Identities=12% Similarity=0.247 Sum_probs=30.0
Q ss_pred EEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccc
Q psy7831 17 FALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSR 68 (206)
Q Consensus 17 f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~ 68 (206)
+.-||+...| .+.||+|+-|.|..-+...+..+ -+|.|.+-|.
T Consensus 5 ~LPdg~~T~V--~vrpG~ti~d~L~kllekRgl~~-------~~~~vf~~g~ 47 (73)
T cd01817 5 ILPDGSTTVV--PTRPGESIRDLLSGLCEKRGINY-------AAVDLFLVGG 47 (73)
T ss_pred ECCCCCeEEE--EecCCCCHHHHHHHHHHHcCCCh-------hHEEEEEecC
Confidence 3458998888 89999999999876443334332 3577777554
No 120
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=27.33 E-value=34 Score=34.22 Aligned_cols=19 Identities=37% Similarity=0.625 Sum_probs=15.9
Q ss_pred CcccCCCCCccceEEEEcc
Q psy7831 49 TKYMCREGGCGVCTVMVKS 67 (206)
Q Consensus 49 ~K~gC~eG~CGACtVlVdG 67 (206)
.+-.|+.|.||+|.|-..|
T Consensus 213 ~~M~CG~G~C~~C~v~~~~ 231 (752)
T PRK12778 213 TIMVDGTGMCGACRVTVGG 231 (752)
T ss_pred ccccCcccccCcceeEeCC
Confidence 4778999999999996544
No 121
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=27.22 E-value=54 Score=26.08 Aligned_cols=14 Identities=29% Similarity=0.446 Sum_probs=12.2
Q ss_pred eEEEEECCEEEEEe
Q psy7831 14 EVKFALNEKFYTVG 27 (206)
Q Consensus 14 ~i~f~vNG~~~~v~ 27 (206)
.++++|||+.|+|.
T Consensus 4 ~~~itvng~~y~V~ 17 (130)
T PRK06549 4 KFKITIDGKEYLVE 17 (130)
T ss_pred eEEEEECCEEEEEE
Confidence 48899999999984
No 122
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=26.33 E-value=47 Score=17.09 Aligned_cols=14 Identities=29% Similarity=0.539 Sum_probs=11.3
Q ss_pred CCCccccCCCCccccc
Q psy7831 119 NGTQCGYCSPGMVMAM 134 (206)
Q Consensus 119 ~~~QCG~Ct~~~~~~~ 134 (206)
..+.|+.|. .+||+
T Consensus 3 ~C~~C~~C~--~~Cp~ 16 (17)
T PF12800_consen 3 RCIGCGSCV--DVCPT 16 (17)
T ss_dssp CCTTSSSST--TTSTT
T ss_pred cCCCCchHH--hhccC
Confidence 466799999 88885
No 123
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=23.11 E-value=41 Score=32.06 Aligned_cols=63 Identities=16% Similarity=0.146 Sum_probs=38.4
Q ss_pred HcCCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHhc-----CCcc--cCCCCHHHHHHHHH
Q psy7831 117 LMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALG-----GNIC--RCTGYRPILDTFQS 189 (206)
Q Consensus 117 ~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al~-----gnlC--RCtgy~~i~~a~~~ 189 (206)
+..+++||.|+ .+||+. +=|-.+|.+. ... +..+.+-...++ =.+| -|...+++++-+|.
T Consensus 373 ~~~CI~Cg~C~--~vCP~~------L~P~~l~ra~---~~~--d~~~~e~~~~~~C~EedCG~CsyVCPskipL~q~iR~ 439 (448)
T PRK05352 373 ERAMVPIGNYE--RVMPLD------ILPTQLLRAL---IVG--DTDEAQALGALELDEEDLALCTFVCPGKYEYGPILRD 439 (448)
T ss_pred CcceeecCcHh--hcCCCC------CCHHHHHHHH---HcC--CHHHHHHcCchhcCccccCCCccCCCCCchHHHHHHH
Confidence 46789999999 999993 4477666553 222 122222111211 2333 37788899998887
Q ss_pred HHH
Q psy7831 190 FAT 192 (206)
Q Consensus 190 ~a~ 192 (206)
+-.
T Consensus 440 ~k~ 442 (448)
T PRK05352 440 GLD 442 (448)
T ss_pred HHH
Confidence 654
No 124
>TIGR00778 ahpD_dom alkylhydroperoxidase AhpD family core domain. Members of the family include the alkylhydroperoxidase AhpD of Mycobacterium tuberculosis, a macrophage infectivity potentiator peptide of Legionella pneumophila, and an uncharacterized peptide in the tetrachloroethene reductive dehalogenase operon of Dehalospirillum multivorans. We suggest that many peptides containing this domain may have alkylhydroperoxidase or related antioxidant activity.
Probab=22.39 E-value=93 Score=19.51 Aligned_cols=33 Identities=27% Similarity=0.457 Sum_probs=19.9
Q ss_pred HHcCCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHh
Q psy7831 116 ALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERAL 170 (206)
Q Consensus 116 ~~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al 170 (206)
.-....+|-||. .... ....+. -.++++|.+.+
T Consensus 14 ~~s~~~~C~yc~----------------~~H~-----~~a~~~-G~~~~ei~~v~ 46 (50)
T TIGR00778 14 AVSQINGCGYCL----------------DAHT-----KLARKA-GVTAEELAEAL 46 (50)
T ss_pred HHHHHcCCHHHH----------------HHHH-----HHHHHc-CCCHHHHHHHH
Confidence 355566799999 4333 222223 46888888765
No 125
>PRK13596 NADH dehydrogenase I subunit F; Provisional
Probab=22.06 E-value=3.2e+02 Score=26.03 Aligned_cols=71 Identities=14% Similarity=0.222 Sum_probs=40.4
Q ss_pred cHHHHHHHHcCCCccccCCCCccccccccccCCCCchHH--HHHHHHHHhCCCCCCHHHHH--HHhcC---CcccCCCC-
Q psy7831 109 HKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMV--MAMHSFLMEHDYKVGKADVE--RALGG---NICRCTGY- 180 (206)
Q Consensus 109 ~~vq~a~~~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~v--m~~~~ll~~~~~~~~~~ei~--~al~g---nlCRCtgy- 180 (206)
..+.+.|++..+-||..|+ =|.- ..+..-+.+. ..++++|+ ..++. .-..|.-=
T Consensus 335 ~~~~~f~~~ESCGQCtPCR----------------~Gt~~l~~il~~i~~G--~g~~~dl~~L~~ia~~m~~~s~C~lG~ 396 (433)
T PRK13596 335 ARLSYFYKHESCGQCTPCR----------------EGTGWMWRVMERMVKG--RAQKREIDMLLDVTKQIEGHTICALGD 396 (433)
T ss_pred HHHHHHHhhhhCCCCCCch----------------hHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhhcCCCcCcccH
Confidence 4445566688888999998 4433 3333323332 44555554 22222 23456543
Q ss_pred ---HHHHHHHHHHHHhhchh
Q psy7831 181 ---RPILDTFQSFATDACDR 197 (206)
Q Consensus 181 ---~~i~~a~~~~a~~~~~~ 197 (206)
.+++.+++.|..+-..+
T Consensus 397 ~a~~pv~s~l~~F~~efe~h 416 (433)
T PRK13596 397 AAAWPIQGLIRHFRPEIEER 416 (433)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 68888888887765544
No 126
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=21.86 E-value=1.5e+02 Score=23.82 Aligned_cols=56 Identities=16% Similarity=0.405 Sum_probs=34.2
Q ss_pred cCCCCchHHHHHHHHHH-hCCC--------CCCHHHHHHHh-c---------CCccc-CCCCHHHHHHHHHHHHhh
Q psy7831 139 CGYCSPGMVMAMHSFLM-EHDY--------KVGKADVERAL-G---------GNICR-CTGYRPILDTFQSFATDA 194 (206)
Q Consensus 139 ~~~~~PG~vm~~~~ll~-~~~~--------~~~~~ei~~al-~---------gnlCR-Ctgy~~i~~a~~~~a~~~ 194 (206)
-||+|.|...-+-.+|+ ..++ +..+..|+..+ . .|-|- |+.-..+.++++.+....
T Consensus 6 ~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~ 81 (178)
T PF02492_consen 6 TGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREY 81 (178)
T ss_dssp EESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCC
T ss_pred EcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhc
Confidence 38999999999999993 3332 33444454332 1 13343 666778888888876655
No 127
>PHA00446 hypothetical protein
Probab=21.60 E-value=26 Score=26.02 Aligned_cols=12 Identities=33% Similarity=0.371 Sum_probs=9.7
Q ss_pred CccccCCCCCCC
Q psy7831 1 MVYREDPLPKAG 12 (206)
Q Consensus 1 ~~~~~~p~~~~~ 12 (206)
|||||+-.++.+
T Consensus 32 mVyRWKd~ks~k 43 (89)
T PHA00446 32 MVYRWKDHKSSK 43 (89)
T ss_pred EEEEecccCCch
Confidence 789998888776
No 128
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=20.71 E-value=78 Score=23.08 Aligned_cols=35 Identities=17% Similarity=0.458 Sum_probs=24.0
Q ss_pred CCcHHHHHHhhcCCCCCcccCCCCCccceE----EEEccc
Q psy7831 33 GTRLVDFIRDVAGLKGTKYMCREGGCGVCT----VMVKSR 68 (206)
Q Consensus 33 ~~tLLd~LR~~~~l~g~K~gC~eG~CGACt----VlVdG~ 68 (206)
...+.+.|.+..++.-.+++| .|.||-|. ++|||+
T Consensus 16 ~~~~~~~Le~~p~~~Vie~gC-l~~Cg~C~~~pFAlVnG~ 54 (78)
T PF07293_consen 16 TDQVYEKLEKDPDIDVIEYGC-LSYCGPCAKKPFALVNGE 54 (78)
T ss_pred hHHHHHHHhcCCCccEEEcCh-hhhCcCCCCCccEEECCE
Confidence 345677887765665567888 47888776 566776
No 129
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=20.37 E-value=2.9e+02 Score=18.91 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=23.7
Q ss_pred EEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccc
Q psy7831 16 KFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSR 68 (206)
Q Consensus 16 ~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~ 68 (206)
.++|||+.++ +..+.||-+ ||++..- .+-.+++||-
T Consensus 2 ~I~vN~k~~~----~~~~~tl~~-lr~~~k~------------~~DI~I~NGF 37 (57)
T PF14453_consen 2 KIKVNEKEIE----TEENTTLFE-LRKESKP------------DADIVILNGF 37 (57)
T ss_pred EEEECCEEEE----cCCCcCHHH-HHHhhCC------------CCCEEEEcCc
Confidence 5789999765 456666664 5654433 2447888997
No 130
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=20.35 E-value=47 Score=34.27 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=31.2
Q ss_pred cCCCeEEEEcCCCCCCCCccHHHHHHHHcCCCccccCCCCccccccc
Q psy7831 90 CNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHR 136 (206)
Q Consensus 90 ~~g~~I~TvEgL~~~~~~~~~vq~a~~~~~~~QCG~Ct~~~~~~~~~ 136 (206)
+++.+.+||+.=+..+.-.-.--..+.+..+.+||-|. .|||+..
T Consensus 164 vqv~eaL~i~w~~~~pRV~wd~~~~i~~SSCVsCG~Cv--tVCP~nA 208 (978)
T COG3383 164 VQVNEALTIDWRGEDPRVIWDNDVPINESSCVSCGACV--TVCPVNA 208 (978)
T ss_pred hhceeEEEeecccCCcceecCCCCccccccccccCccc--eecchhh
Confidence 67888899987654331111111256688999999999 9999774
No 131
>COG0023 SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=20.16 E-value=96 Score=23.93 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=18.8
Q ss_pred CCCeEEEEcCCCCCCCCccHHHHHHH
Q psy7831 91 NGWSIYTIDGLGDKKHGYHKVQSRLA 116 (206)
Q Consensus 91 ~g~~I~TvEgL~~~~~~~~~vq~a~~ 116 (206)
-|+.||+||||..++-.++.+-..|.
T Consensus 38 ~gK~VTiI~Gld~~~~dlk~Lak~LK 63 (104)
T COG0023 38 KGKTVTIIEGLDLKDIDLKKLAKELK 63 (104)
T ss_pred CCcEEEEEeCcccchhhHHHHHHHHH
Confidence 58999999999876545555555554
Done!