Query psy7831
Match_columns 206
No_of_seqs 175 out of 1154
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 20:01:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7831.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7831hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nvw_A Xanthine dehydrogenase/ 100.0 9.1E-63 3.1E-67 403.4 13.9 160 13-191 3-163 (164)
2 3hrd_D Nicotinate dehydrogenas 100.0 3.3E-60 1.1E-64 387.1 16.2 154 12-195 3-156 (160)
3 1n62_A Carbon monoxide dehydro 100.0 1.2E-57 4.2E-62 373.9 17.0 154 13-195 4-157 (166)
4 1ffv_A CUTS, iron-sulfur prote 100.0 1.5E-57 5E-62 372.5 17.3 153 13-195 4-156 (163)
5 3zyv_A AOH1; oxidoreductase, m 100.0 3E-57 1E-61 463.0 14.4 165 12-194 7-171 (1335)
6 1rm6_C 4-hydroxybenzoyl-COA re 100.0 9.5E-54 3.2E-58 349.1 16.4 152 12-193 2-153 (161)
7 2w3s_A Xanthine dehydrogenase; 100.0 1.3E-51 4.6E-56 383.5 14.1 147 13-192 1-151 (462)
8 3unc_A Xanthine dehydrogenase/ 100.0 3.1E-51 1.1E-55 418.3 15.6 163 14-194 5-167 (1332)
9 1t3q_A Quinoline 2-oxidoreduct 100.0 2.7E-49 9.1E-54 324.3 16.2 157 8-194 5-161 (168)
10 1dgj_A Aldehyde oxidoreductase 100.0 6.6E-47 2.3E-51 375.1 14.5 150 14-193 3-155 (907)
11 1vlb_A Aldehyde oxidoreductase 100.0 9.8E-47 3.4E-51 373.9 14.7 150 14-193 3-155 (907)
12 3vr8_B Iron-sulfur subunit of 99.9 4.9E-25 1.7E-29 193.6 11.4 156 2-178 40-240 (282)
13 2bs2_B Quinol-fumarate reducta 99.9 2.1E-21 7.3E-26 164.9 12.0 156 2-179 9-210 (241)
14 2h88_B Succinate dehydrogenase 99.8 4.4E-21 1.5E-25 164.7 11.3 157 2-179 16-217 (252)
15 2wdq_B Succinate dehydrogenase 99.8 3.2E-20 1.1E-24 157.3 14.2 156 2-179 7-208 (238)
16 1kf6_B Fumarate reductase iron 99.8 2.2E-18 7.4E-23 146.4 11.2 155 2-178 10-205 (243)
17 3kwl_A Uncharacterized protein 99.4 1.4E-12 5E-17 122.4 10.1 141 2-179 29-196 (514)
18 3c8y_A Iron hydrogenase 1; dit 99.1 5.7E-11 2E-15 112.6 5.4 101 15-133 2-108 (574)
19 1l5p_A Ferredoxin; [2Fe-2S] cl 98.7 3.9E-08 1.3E-12 71.9 8.7 77 14-93 2-89 (93)
20 1iue_A Ferredoxin; electron tr 98.6 5.3E-08 1.8E-12 71.8 5.8 72 13-88 3-82 (98)
21 1jq4_A Methane monooxygenase c 98.5 8.6E-08 2.9E-12 70.5 4.3 53 12-68 2-58 (98)
22 1a70_A Ferredoxin; iron-sulfur 98.5 2.2E-07 7.4E-12 68.4 6.0 72 13-88 3-82 (97)
23 1frr_A Ferredoxin I; electron 98.5 1.2E-07 4.1E-12 69.1 4.4 71 13-88 2-81 (95)
24 1frd_A Heterocyst [2Fe-2S] fer 98.4 1.6E-07 5.5E-12 68.9 4.0 72 13-88 3-84 (98)
25 1wri_A Ferredoxin II, ferredox 98.4 4.5E-07 1.5E-11 66.1 6.2 71 13-88 2-80 (93)
26 1awd_A Ferredoxin; electron tr 98.4 7.7E-07 2.6E-11 64.9 7.2 71 14-88 2-80 (94)
27 2wlb_A ETP1-FD, electron trans 98.3 5E-07 1.7E-11 66.9 5.3 51 13-67 4-56 (103)
28 1czp_A Ferredoxin I; [2Fe-2S] 98.2 1.4E-06 4.9E-11 64.0 5.0 72 13-88 3-84 (98)
29 1xlq_A Putidaredoxin, PDX; [2F 98.1 4.5E-06 1.5E-10 62.0 5.6 51 14-67 2-54 (106)
30 3lxf_A Ferredoxin; iron, iron- 98.1 5.9E-06 2E-10 61.7 6.1 78 15-95 3-98 (104)
31 1b9r_A Protein (terpredoxin); 98.1 2.1E-06 7.3E-11 63.7 3.4 73 14-89 2-92 (105)
32 3hui_A Ferredoxin; cytochrome 98.1 4.4E-06 1.5E-10 64.8 5.2 79 13-94 22-118 (126)
33 1uwm_A Ferredoxin VI, FDVI; el 98.0 5E-06 1.7E-10 61.7 5.2 51 14-67 2-54 (106)
34 1i7h_A Ferredoxin; 2Fe-2S,elec 97.9 1.3E-05 4.4E-10 60.1 4.5 51 14-68 3-59 (111)
35 3i9v_3 NADH-quinone oxidoreduc 97.8 1.1E-05 3.9E-10 78.7 4.8 106 14-133 1-129 (783)
36 2y5c_A Adrenodoxin-like protei 97.7 5.9E-05 2E-09 56.3 5.7 78 14-95 7-102 (109)
37 2bt6_A Adrenodoxin 1; rutheniu 97.7 3.5E-05 1.2E-09 57.4 4.2 49 14-66 8-60 (108)
38 1doi_A 2Fe-2S ferredoxin; halo 97.6 3.8E-05 1.3E-09 59.6 3.7 70 14-88 29-107 (128)
39 1krh_A Benzoate 1,2-dioxygenas 97.5 0.00012 4.1E-09 63.7 5.4 50 15-68 4-57 (338)
40 2pia_A Phthalate dioxygenase r 97.3 0.00024 8.1E-09 61.7 5.4 51 14-68 237-288 (321)
41 3ah7_A [2Fe-2S]ferredoxin; [2F 97.1 0.00048 1.6E-08 51.5 4.3 40 25-68 18-59 (113)
42 3n9z_C Adrenodoxin; cytochrome 96.9 0.0002 6.8E-09 55.2 0.4 79 13-95 6-104 (123)
43 1y56_A Hypothetical protein PH 96.0 0.01 3.5E-07 54.2 6.7 73 12-101 13-91 (493)
44 3zyy_X Iron-sulfur cluster bin 95.8 0.008 2.7E-07 57.8 5.1 70 13-88 4-82 (631)
45 2gag_A Heterotetrameric sarcos 94.3 0.08 2.7E-06 52.6 7.3 80 12-103 20-112 (965)
46 2l32_A Small archaeal modifier 90.0 0.34 1.1E-05 33.7 4.0 43 13-68 1-44 (74)
47 2k5p_A THis protein, thiamine- 89.9 0.58 2E-05 32.8 5.2 66 16-103 2-68 (78)
48 1tyg_B YJBS; alpha beta barrel 87.8 1.7 5.8E-05 31.1 6.6 41 13-68 19-60 (87)
49 2kl0_A Putative thiamin biosyn 87.6 1.6 5.5E-05 30.0 6.2 62 16-103 2-64 (73)
50 1f0z_A THis protein; ubiquitin 79.3 3.5 0.00012 27.3 4.9 38 16-68 2-39 (66)
51 2l05_A Serine/threonine-protei 76.5 4.3 0.00015 29.8 5.0 78 7-103 12-92 (95)
52 3ny5_A Serine/threonine-protei 72.6 26 0.00087 25.7 9.1 76 13-105 14-90 (96)
53 2cu3_A Unknown function protei 72.0 9.5 0.00033 24.9 5.5 36 17-68 2-37 (64)
54 1v86_A DNA segment, CHR 7, way 63.2 11 0.00039 26.5 4.8 31 9-41 14-44 (95)
55 1c1y_B Proto-onkogene serine/t 60.5 20 0.00069 25.2 5.5 41 17-66 7-47 (77)
56 2al3_A TUG long isoform; TUG U 60.5 9.6 0.00033 27.6 3.9 34 12-47 9-46 (90)
57 1ryj_A Unknown; beta/alpha pro 60.2 7.8 0.00027 25.9 3.2 39 15-68 5-47 (70)
58 1ep3_B Dihydroorotate dehydrog 59.0 4.3 0.00015 33.3 2.1 17 50-66 223-239 (262)
59 3v6c_B Ubiquitin; structural g 52.1 13 0.00044 25.6 3.4 33 7-41 12-45 (91)
60 3dbh_I NEDD8; cell cycle, acti 51.2 14 0.00047 24.8 3.4 32 8-41 8-40 (88)
61 1wxm_A A-RAF proto-oncogene se 50.2 13 0.00044 26.7 3.1 44 14-66 9-53 (86)
62 4hcn_B Polyubiquitin, ubiquiti 46.7 16 0.00054 25.6 3.2 29 11-41 21-50 (98)
63 1erd_A Pheromone ER-2; NMR {Eu 42.4 22 0.00075 21.4 2.7 17 111-127 5-21 (40)
64 1wgg_A Ubiquitin carboxyl-term 42.1 19 0.00066 25.3 3.0 31 9-41 4-35 (96)
65 1v5t_A 8430435I17RIK protein; 41.1 37 0.0013 23.3 4.4 33 9-42 4-36 (90)
66 1ttn_A DC-UBP, dendritic cell- 40.0 33 0.0011 24.3 4.1 29 12-42 23-52 (106)
67 2kmm_A Guanosine-3',5'-BIS(dip 39.3 29 0.00098 22.6 3.4 43 13-68 1-44 (73)
68 2bwf_A Ubiquitin-like protein 36.0 30 0.001 22.4 3.1 28 12-41 4-31 (77)
69 1v2y_A 3300001G02RIK protein; 33.4 27 0.00091 25.5 2.6 26 12-39 7-33 (105)
70 2dzi_A Ubiquitin-like protein 32.9 35 0.0012 22.2 3.0 30 10-41 5-35 (81)
71 4fbj_B NEDD8; effector-HOST ta 32.3 35 0.0012 23.2 3.1 27 13-41 1-28 (88)
72 1rrb_A RAF-1 RBD, RAF proto-on 30.5 16 0.00056 27.2 1.0 76 14-104 20-97 (107)
73 3i9v_1 NADH-quinone oxidoreduc 30.3 32 0.0011 31.5 3.1 72 112-198 345-425 (438)
74 2kd0_A LRR repeats and ubiquit 30.2 65 0.0022 21.8 4.2 28 12-41 12-39 (85)
75 3u30_A Ubiquitin, linear DI-ub 29.6 40 0.0014 25.8 3.2 28 12-41 20-48 (172)
76 2klc_A Ubiquilin-1; ubiquitin- 28.8 43 0.0015 23.6 3.1 35 5-41 18-52 (101)
77 1wh3_A 59 kDa 2'-5'-oligoadeny 28.5 76 0.0026 21.0 4.2 28 12-41 7-35 (87)
78 3phx_B Ubiquitin-like protein 28.0 44 0.0015 21.8 2.9 28 12-41 4-32 (79)
79 3plu_A Ubiquitin-like modifier 27.0 33 0.0011 24.7 2.2 27 12-40 19-48 (93)
80 3a9j_A Ubiquitin; protein comp 25.9 77 0.0026 20.0 3.7 27 13-41 1-28 (76)
81 3k9o_B Ubiquitin, UBB+1; E2-25 25.8 53 0.0018 22.3 3.1 27 13-41 2-29 (96)
82 2ojr_A Ubiquitin; lanthide-bin 25.7 44 0.0015 23.9 2.7 29 11-41 34-63 (111)
83 3vdz_A Ubiquitin-40S ribosomal 24.7 37 0.0013 24.4 2.1 28 12-41 35-63 (111)
84 1ndd_A NEDD8, protein (ubiquit 23.7 74 0.0025 20.1 3.3 27 13-41 1-28 (76)
85 3n3k_B Ubiquitin; hydrolase, p 22.8 52 0.0018 21.6 2.5 28 12-41 3-31 (85)
86 3rt3_B Ubiquitin-like protein 22.3 61 0.0021 24.2 3.0 28 12-41 2-30 (159)
87 2wyq_A HHR23A, UV excision rep 21.5 83 0.0029 20.6 3.3 29 11-41 4-33 (85)
88 1yx5_B Ubiquitin; proteasome, 21.3 98 0.0033 21.2 3.7 27 13-41 1-28 (98)
89 2nnz_A Hypothetical protein; b 21.2 1E+02 0.0034 24.0 4.1 33 12-47 29-64 (153)
90 3m62_B UV excision repair prot 20.8 75 0.0026 22.5 3.1 27 13-41 2-29 (106)
91 1t3u_A Conserved hypothetical 20.8 83 0.0028 22.3 3.3 19 13-33 5-23 (104)
92 2k02_A Ferrous iron transport 20.7 39 0.0013 23.9 1.4 11 51-61 54-64 (87)
93 1bc6_A 7-Fe ferredoxin; electr 20.7 43 0.0015 21.7 1.6 31 118-150 37-67 (77)
No 1
>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A* 3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*
Probab=100.00 E-value=9.1e-63 Score=403.36 Aligned_cols=160 Identities=40% Similarity=0.795 Sum_probs=150.9
Q ss_pred ceEEEEECCEEE-EEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccccCCCcccccccccchhhhhhhcC
Q psy7831 13 KEVKFALNEKFY-TVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMCN 91 (206)
Q Consensus 13 ~~i~f~vNG~~~-~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~~~~~ 91 (206)
.+|+|+|||+++ ++ +++|+++|||+||++++++|+|+||++|.||||||+||++++.++.+..++|+||++|+.+++
T Consensus 3 ~~i~~~vNG~~~~~~--~~~p~~~Ll~~LR~~lgltGtK~GC~~G~CGACTVlvd~~~~~~~~~~g~~v~SCl~~a~~~~ 80 (164)
T 3nvw_A 3 DELVFFVNGKKVVEK--NADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDRLQDKIIHFSANACLAPICTLH 80 (164)
T ss_dssp CCEEEEETTEEEEET--TCCTTCBHHHHHHHTSCCTTSCCSCSSSSSCTTEEEEEEEETTTTEEEEEEEETTTCBGGGCT
T ss_pred ceEEEEECCEEEEEe--cCCCCCCHHHHHHHHcCCCCcCCCcCCCCCCCCEEEEccccccccccCCcEEehhhhhHHHhC
Confidence 569999999986 56 899999999999999999999999999999999999997777777666779999999999999
Q ss_pred CCeEEEEcCCCCCCCCccHHHHHHHHcCCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHhc
Q psy7831 92 GWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALG 171 (206)
Q Consensus 92 g~~I~TvEgL~~~~~~~~~vq~a~~~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al~ 171 (206)
|++|+|||||++.++.+||||+||++++++|||||| |||||++++||++++ +|+++||+++|+
T Consensus 81 G~~I~TiEGL~~~~~~lhpvQ~af~~~~~~QCGfCt----------------PG~imsa~aLl~~~p-~pt~~eI~~al~ 143 (164)
T 3nvw_A 81 HVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCT----------------PGIVMSMYTLLRNQP-EPTVEEIEDAFQ 143 (164)
T ss_dssp TCEEECGGGTCCTTSCCCHHHHHHHHTTCCSSCTTH----------------HHHHHHHHHHHHHCS-SCCHHHHHTSCT
T ss_pred CcceEEecccCCCCCccCHHHHHHHHcCCCcCccch----------------hhHHHHHHHHHHhCC-CCCHHHHHHHHc
Confidence 999999999987556799999999999999999999 999999999999999 999999999999
Q ss_pred CCcccCCCCHHHHHHHHHHH
Q psy7831 172 GNICRCTGYRPILDTFQSFA 191 (206)
Q Consensus 172 gnlCRCtgy~~i~~a~~~~a 191 (206)
|||||||||++|++||++|+
T Consensus 144 GNlCRCTgY~~I~~Av~~~~ 163 (164)
T 3nvw_A 144 GNLCRCTGYRPILQGFRTFA 163 (164)
T ss_dssp TCCCSSSCSHHHHHHHHTTC
T ss_pred CCCCCCCCCHHHHHHHHHHh
Confidence 99999999999999999886
No 2
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=100.00 E-value=3.3e-60 Score=387.13 Aligned_cols=154 Identities=27% Similarity=0.568 Sum_probs=147.7
Q ss_pred CceEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccccCCCcccccccccchhhhhhhcC
Q psy7831 12 GKEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMCN 91 (206)
Q Consensus 12 ~~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~~~~~ 91 (206)
+|.++|+|||+++++ +++|+++|||+||++++++|+|+||++|.||||+|+|||+ +++||++++.+++
T Consensus 3 ~~~i~~~vNG~~~~v--~v~p~~tLLd~LR~~lgltgtk~gC~~G~CGACtV~vdG~----------~v~sC~~~~~~~~ 70 (160)
T 3hrd_D 3 KITINLNLNGEARSI--VTEPNKRLLDLLREDFGLTSVKEGCSEGECGACTVIFNGD----------PVTTCCMLAGQAD 70 (160)
T ss_dssp CEEEEEEETTEEEEE--EECSSSBHHHHHHTTSCCTTSCCSSSSSSSCTTEEEETTE----------EEEGGGSBGGGGT
T ss_pred cceEEEEECCEEEEE--ecCCCCCHHHHHHHhcCCCccccccCCCCCCCCEEEECCE----------EEEchhhhhhhhC
Confidence 368999999999999 8999999999999989999999999999999999999999 9999999999999
Q ss_pred CCeEEEEcCCCCCCCCccHHHHHHHHcCCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHhc
Q psy7831 92 GWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALG 171 (206)
Q Consensus 92 g~~I~TvEgL~~~~~~~~~vq~a~~~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al~ 171 (206)
|++|+|||||++. +.+||||++|++++++|||||| |||||++++||+++| +|+++||+++|+
T Consensus 71 G~~I~TiEgl~~~-~~l~pvq~af~~~~~~QCGfCt----------------pG~ims~~all~~~~-~pt~~eI~~al~ 132 (160)
T 3hrd_D 71 ESTIITLEGVAED-GKPSLLQQCFLEAGAVQCGYCT----------------PGMILTAKALLDKNP-DPTDEEITVAMS 132 (160)
T ss_dssp TEEEECGGGTSBT-TBCCHHHHHHHHHTCCSSCSSH----------------HHHHHHHHHHHTTCS-SCCHHHHHHHHT
T ss_pred CCceEEeCCCCCC-CccCHHHHHHHHcCCCcCCcch----------------hhHHHHHHHHHHhCC-CCCHHHHHHHHc
Confidence 9999999999864 5699999999999999999999 999999999999999 999999999999
Q ss_pred CCcccCCCCHHHHHHHHHHHHhhc
Q psy7831 172 GNICRCTGYRPILDTFQSFATDAC 195 (206)
Q Consensus 172 gnlCRCtgy~~i~~a~~~~a~~~~ 195 (206)
|||||||||++|++||+++++...
T Consensus 133 GNlCRCtgY~~I~~Av~~aa~~~~ 156 (160)
T 3hrd_D 133 GNLCRCTGYIKIHAAVRYAVERCA 156 (160)
T ss_dssp TCCCSSSCSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcHHHHHHHHHHHHHhh
Confidence 999999999999999999997643
No 3
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=100.00 E-value=1.2e-57 Score=373.94 Aligned_cols=154 Identities=34% Similarity=0.668 Sum_probs=147.2
Q ss_pred ceEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccccCCCcccccccccchhhhhhhcCC
Q psy7831 13 KEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMCNG 92 (206)
Q Consensus 13 ~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~~~~~g 92 (206)
+.++|+|||+++++ +++|+++|||+||+.++++++|+||++|.||+|+|+|||+ +++||++++.+++|
T Consensus 4 ~~i~~~vNG~~~~~--~v~~~~tLLd~LR~~lgl~g~k~gC~~G~CGaCtV~vdG~----------~v~SC~~~~~~~~G 71 (166)
T 1n62_A 4 AHIELTINGHPVEA--LVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDLDGM----------SVKSCTMFAVQANG 71 (166)
T ss_dssp EEEEEEETTEEEEE--EECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEETTE----------EEEGGGSBGGGGTT
T ss_pred ceEEEEECCEEEEE--ecCCCCcHHHHHHHcCCCCccccCCCCCCCCCCEEEECCc----------EEechhhhHHHhCC
Confidence 57999999999999 8999999999999989999999999999999999999999 99999999999999
Q ss_pred CeEEEEcCCCCCCCCccHHHHHHHHcCCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHhcC
Q psy7831 93 WSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGG 172 (206)
Q Consensus 93 ~~I~TvEgL~~~~~~~~~vq~a~~~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al~g 172 (206)
++|+|||||++.++.+||+|++|++++++|||||| |||||++++||+++| +|+++||+++|+|
T Consensus 72 ~~V~TiEgL~~~~~~~~pvq~a~~~~~~~QCG~Ct----------------pG~imsa~all~~~~-~pt~~eI~~~l~g 134 (166)
T 1n62_A 72 ASITTIEGMAAPDGTLSALQEGFRMMHGLQCGYCT----------------PGMIMRSHRLLQENP-SPTEAEIRFGIGG 134 (166)
T ss_dssp CEEECGGGSSCTTSCCCHHHHHHHHTTCCSSCSSH----------------HHHHHHHHHHHHHCS-SCCHHHHHHHTTT
T ss_pred ceEEEeCCCCCcCCccCHHHHHHHHcCCccCCccc----------------hhHHHHHHHHHHcCC-CCCHHHHHHHHcC
Confidence 99999999986345799999999999999999999 999999999999999 9999999999999
Q ss_pred CcccCCCCHHHHHHHHHHHHhhc
Q psy7831 173 NICRCTGYRPILDTFQSFATDAC 195 (206)
Q Consensus 173 nlCRCtgy~~i~~a~~~~a~~~~ 195 (206)
||||||||++|++||+++++...
T Consensus 135 NlCRCtgY~~I~~Av~~~a~~~~ 157 (166)
T 1n62_A 135 NLCRCTGYQNIVKAIQYAAAKIN 157 (166)
T ss_dssp CCCSSSTTHHHHHHHHHHHHHHH
T ss_pred CccCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999987543
No 4
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=100.00 E-value=1.5e-57 Score=372.52 Aligned_cols=153 Identities=35% Similarity=0.653 Sum_probs=146.8
Q ss_pred ceEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccccCCCcccccccccchhhhhhhcCC
Q psy7831 13 KEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMCNG 92 (206)
Q Consensus 13 ~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~~~~~g 92 (206)
+.++|+|||+++++ +++|+++|||+||+.++++++|+||++|.||+|+|+|||+ +++||++++.+++|
T Consensus 4 ~~i~~~vNG~~~~~--~v~~~~tLLd~LR~~lgltg~k~gC~~G~CGaCtV~vdG~----------~v~sC~~~~~~~~G 71 (163)
T 1ffv_A 4 KIITVNVNGKAQEK--AVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDIDGR----------SVKSCTHLAVQCDG 71 (163)
T ss_dssp EEEEEEETTEEEEE--EECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEETTE----------EEEGGGSBGGGGTT
T ss_pred ceEEEEECCEEEEE--ecCCCCcHHHHHHhcCCCcccccCCCCCCCCCCEEEECCc----------EecchHhhHHHhCC
Confidence 57999999999999 8999999999999989999999999999999999999999 99999999999999
Q ss_pred CeEEEEcCCCCCCCCccHHHHHHHHcCCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHhcC
Q psy7831 93 WSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGG 172 (206)
Q Consensus 93 ~~I~TvEgL~~~~~~~~~vq~a~~~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al~g 172 (206)
++|+|||||++. +.+||+|++|++++++|||||| |||||++++||+++| +|+++||+++|+|
T Consensus 72 ~~I~TiEgL~~~-~~l~pvq~a~~~~~~~QCG~Ct----------------pG~imsa~all~~~~-~pt~~ei~~~l~g 133 (163)
T 1ffv_A 72 SEVLTVEGLANK-GVLHAVQEGFYKEHGLQCGFCT----------------PGMLMRAYRFLQENP-NPTEAEIRMGMTG 133 (163)
T ss_dssp CEEECGGGTSBT-TBCCHHHHHHHHTTCCSSCSSH----------------HHHHHHHHHHHHHCS-SCCHHHHHHHTTT
T ss_pred ceEEEECCCCCC-CCcCHHHHHHHHhCCccCcccc----------------HhHHHHHHHHHHcCC-CCCHHHHHHHHcC
Confidence 999999999864 5799999999999999999999 999999999999999 9999999999999
Q ss_pred CcccCCCCHHHHHHHHHHHHhhc
Q psy7831 173 NICRCTGYRPILDTFQSFATDAC 195 (206)
Q Consensus 173 nlCRCtgy~~i~~a~~~~a~~~~ 195 (206)
||||||||++|++||+++++...
T Consensus 134 nlCRCtgY~~I~~Av~~~a~~~~ 156 (163)
T 1ffv_A 134 NLCRCTGYQNIVKAVQYAARKLQ 156 (163)
T ss_dssp CCCSSSCSHHHHHHHHHHHHHHT
T ss_pred CccCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999987543
No 5
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=100.00 E-value=3e-57 Score=463.00 Aligned_cols=165 Identities=40% Similarity=0.780 Sum_probs=158.4
Q ss_pred CceEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccccCCCcccccccccchhhhhhhcC
Q psy7831 12 GKEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMCN 91 (206)
Q Consensus 12 ~~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~~~~~ 91 (206)
+.++.|+|||++++++ +++|++|||+|||++++|+|||.||+||+||||||+|..+++.++.+.+++|||||+|+.++|
T Consensus 7 ~~~l~F~vNG~~v~~~-~~~p~~tLl~~LR~~~~ltGTK~gC~EG~CGACtV~v~~~~~~~~~~~~~avNsCl~~l~~~~ 85 (1335)
T 3zyv_A 7 SDELIFFVNGKKVTER-NADPEVNLLFYLRKVIRLTGTKYGCGGGDCGACTVMISRYDPISKRISHFSATACLVPICSLH 85 (1335)
T ss_dssp CCCEEEEETTEEEEES-SCCTTCBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEEEEEETTTTEEEEEEEETTTCBGGGCT
T ss_pred CCeEEEEECCEEEEeC-CCCcCccHHHHHhccCCCcccccccCCCCCcceEEEEeeEeCCCCeEEEEEhhHHHHHHHHhc
Confidence 4679999999999996 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEcCCCCCCCCccHHHHHHHHcCCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHhc
Q psy7831 92 GWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALG 171 (206)
Q Consensus 92 g~~I~TvEgL~~~~~~~~~vq~a~~~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al~ 171 (206)
|++|+|||||++.+.+|||||++|+++|++|||||| ||||||||+||++++ .|++++|+++|+
T Consensus 86 g~~v~TvEglg~~~~~lHpvQ~~~a~~hgsQCGFCT----------------PGfVMSmyall~~~~-~pt~~~ie~al~ 148 (1335)
T 3zyv_A 86 GAAVTTVEGIGSTKTRIHPVQERIAKGHGTQCGFCT----------------PGMVMSIYTLLRNHP-EPSTEQIMETLG 148 (1335)
T ss_dssp TCEEECHHHHCCTTSCCCHHHHHHHHTTCCSSCTTH----------------HHHHHHHHHHHHHCS-SCCHHHHHHHHT
T ss_pred CCEEEeeCCCCCCCCCCCHHHHHHHhcCCCcCCCCC----------------cHHHHHHHHHHHcCC-CCCHHHHHHHhC
Confidence 999999999999878899999999999999999999 999999999999999 999999999999
Q ss_pred CCcccCCCCHHHHHHHHHHHHhh
Q psy7831 172 GNICRCTGYRPILDTFQSFATDA 194 (206)
Q Consensus 172 gnlCRCtgy~~i~~a~~~~a~~~ 194 (206)
||||||||||||+||+|+|+.+.
T Consensus 149 GNLCRCTGYRPIldA~ksfa~~~ 171 (1335)
T 3zyv_A 149 GNLCRCTGYRPIVESAKSFCPSS 171 (1335)
T ss_dssp TCCCSSSCSHHHHHHHHTTCC--
T ss_pred CcccccCCCHHHHHHHHHhhccC
Confidence 99999999999999999998654
No 6
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=100.00 E-value=9.5e-54 Score=349.06 Aligned_cols=152 Identities=34% Similarity=0.670 Sum_probs=145.8
Q ss_pred CceEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccccCCCcccccccccchhhhhhhcC
Q psy7831 12 GKEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMCN 91 (206)
Q Consensus 12 ~~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~~~~~ 91 (206)
+..++|+|||+++++ +++|+++|||+||+.++++++|.+|++|.||+|+|+|||+ +++||++++.+++
T Consensus 2 ~~~i~~~vNG~~~~v--~~~~~~tLL~~Lr~~~gl~g~k~gC~~G~CGaCtV~vdG~----------~v~sC~~~~~~~~ 69 (161)
T 1rm6_C 2 KNILRLTLNGRARED--LVPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVLVDDR----------PRLACSTLAHQVA 69 (161)
T ss_dssp EEEEEEEETTEEEEE--EEETTCBHHHHHHHTTCCTTSCCCSSSSSSCTTEEEETTE----------EEEGGGSBGGGGT
T ss_pred CceEEEEECCEEEEE--ecCCcCcHHHHHHHcCCCcccccCCCCCCCCCCEEEECCc----------EEechHHHHHHhC
Confidence 457999999999999 8999999999999988999999999999999999999999 9999999999999
Q ss_pred CCeEEEEcCCCCCCCCccHHHHHHHHcCCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHhc
Q psy7831 92 GWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALG 171 (206)
Q Consensus 92 g~~I~TvEgL~~~~~~~~~vq~a~~~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al~ 171 (206)
|++|+|||||++. +.+||+|++|++++++|||||| |||+|++++||++++ +|+++||+++|+
T Consensus 70 G~~v~TiEgL~~~-~~~~p~q~a~~~~~~~qCG~Ct----------------pg~im~a~~ll~~~~-~pt~~~i~~~l~ 131 (161)
T 1rm6_C 70 GKKVETVESLATQ-GTLSKLQAAFHEKLGTQCGFCT----------------PGMIMASEALLRKNP-SPSRDEIKAALA 131 (161)
T ss_dssp TSEEECGGGSSBT-TBCCHHHHHHHHHTCCSSCSSH----------------HHHHHHHHHHHHHCS-SCCHHHHHHHTT
T ss_pred CceEEEECCCCCC-CccCHHHHHHHHhCCCcCCCCc----------------hHHHHHHHHHHhcCC-CCCHHHHHHHHc
Confidence 9999999999874 5799999999999999999999 999999999999999 799999999999
Q ss_pred CCcccCCCCHHHHHHHHHHHHh
Q psy7831 172 GNICRCTGYRPILDTFQSFATD 193 (206)
Q Consensus 172 gnlCRCtgy~~i~~a~~~~a~~ 193 (206)
|||||||||++|++|++++++.
T Consensus 132 gnlcRCtgy~~i~~A~~~~~~~ 153 (161)
T 1rm6_C 132 GNLCRCTGYVKIIKSVETAAAA 153 (161)
T ss_dssp TCCCSSSCSHHHHHHHHHHHHH
T ss_pred CCeECCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999864
No 7
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=100.00 E-value=1.3e-51 Score=383.49 Aligned_cols=147 Identities=39% Similarity=0.735 Sum_probs=139.7
Q ss_pred ceEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEE----ccccCCCcccccccccchhhhhh
Q psy7831 13 KEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMV----KSRHPVTKELLVYSVNACLVYVQ 88 (206)
Q Consensus 13 ~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlV----dG~~~~~~~~~~~~v~sCl~~~~ 88 (206)
|+++|+|||+.+++. +++|+++|||+|| +++++|+|+||++|.||||+|+| ||+ +++||++++.
T Consensus 1 ~~~~~~vNg~~~~~~-~~~~~~~Ll~~Lr-~~~l~g~k~gC~~G~CGaCtV~v~~~~~g~----------~v~sCl~~~~ 68 (462)
T 2w3s_A 1 MEIAFLLNGETRRVR-IEDPTQSLLEWLR-AEGLTGTKEGCNEGDCGACTVMIRDAAGSR----------AVNACLMMLP 68 (462)
T ss_dssp CEEEEEETTEEEEEE-CSCTTCBHHHHHH-HTTCTTSCCSCSSSSSCTTEEEEEETTEEE----------EEETTTCBGG
T ss_pred CcEEEEECCEEEEEe-cCCCCCcHHHHHH-HcCCCccCCCCCCCCcCCcEEEEEecCCCe----------EEEchhhhHH
Confidence 468999999999995 7899999999999 89999999999999999999999 998 9999999999
Q ss_pred hcCCCeEEEEcCCCCCCCCccHHHHHHHHcCCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHH
Q psy7831 89 MCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVER 168 (206)
Q Consensus 89 ~~~g~~I~TvEgL~~~~~~~~~vq~a~~~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~ 168 (206)
+++|++|+|||||++.++.+||||++|+++|++|||||| |||||++++|| +|+++||++
T Consensus 69 ~~~g~~i~TiEgl~~~~~~~~~~q~a~~~~~~~QCG~Ct----------------pG~im~~~~ll-----~p~~~~i~~ 127 (462)
T 2w3s_A 69 QIAGKALRTIEGIAAPDGRLHPVQQAMIDHHGSQCGFCT----------------PGFIVSMAAAH-----DRDRKDYDD 127 (462)
T ss_dssp GGTTCEEECGGGTSCTTSCCCHHHHHHHHTTCCSSCTTH----------------HHHHHHHHHHH-----HTTCCCHHH
T ss_pred HhCCCcEEEECCCCCCCCCCCHHHHHHHHhCCCCCCCCc----------------chHHHHHHHHH-----CCCHHHHHH
Confidence 999999999999986446799999999999999999999 99999999999 358999999
Q ss_pred HhcCCcccCCCCHHHHHHHHHHHH
Q psy7831 169 ALGGNICRCTGYRPILDTFQSFAT 192 (206)
Q Consensus 169 al~gnlCRCtgy~~i~~a~~~~a~ 192 (206)
+|+|||||||||++|++||++++.
T Consensus 128 ~l~gnlCRCtgy~~i~~a~~~~~~ 151 (462)
T 2w3s_A 128 LLAGNLCRCTGYAPILRAAEAAAG 151 (462)
T ss_dssp HSTTCCCSSSCSHHHHHHHHHHHT
T ss_pred HHcCCcccCCCcHHHHHHHHHHhh
Confidence 999999999999999999999983
No 8
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=100.00 E-value=3.1e-51 Score=418.30 Aligned_cols=163 Identities=39% Similarity=0.782 Sum_probs=153.5
Q ss_pred eEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccccCCCcccccccccchhhhhhhcCCC
Q psy7831 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMCNGW 93 (206)
Q Consensus 14 ~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~~~~~g~ 93 (206)
.|+|+|||+++++. +++|+++||++||++++|+|+|+||++|.||||||+||++++.++.+..++|+||++|+.+++|+
T Consensus 5 ~i~~~vNg~~~~~~-~~~p~~~ll~~LR~~~~ltgtk~gC~~g~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~ 83 (1332)
T 3unc_A 5 ELVFFVNGKKVVEK-NADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDRLQDKIIHFSANACLAPICTLHHV 83 (1332)
T ss_dssp CEEEEETTEEEEET-TCCTTCBHHHHHHHTSCCTTSCCSCSSSSSCTTEEEEEEEETTTTEEEEEEEETTTCBGGGCTTC
T ss_pred cEEEEECCEEEEee-cCCCCCCHHHHHhhhcCCCCcCCCcCCCCCCCcEEEEecccccccccCCeEeehHHhhHHHhCCC
Confidence 69999999999864 79999999999999999999999999999999999999888888888888999999999999999
Q ss_pred eEEEEcCCCCCCCCccHHHHHHHHcCCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHhcCC
Q psy7831 94 SIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGN 173 (206)
Q Consensus 94 ~I~TvEgL~~~~~~~~~vq~a~~~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al~gn 173 (206)
+|+|||||++.++.+||||++|+++|++|||||| |||||++++||++++ .|+++||+++|+||
T Consensus 84 ~i~TiEgl~~~~~~~hpvq~a~~~~~~~QCG~Ct----------------pG~vms~~~ll~~~~-~p~~~~i~~~l~gn 146 (1332)
T 3unc_A 84 AVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCT----------------PGIVMSMYTLLRNQP-EPTVEEIEDAFQGN 146 (1332)
T ss_dssp EEECGGGTCCTTSCCCHHHHHHHHTTCCSSCTTH----------------HHHHHHHHHHHHHCS-SCCHHHHHHTTTTC
T ss_pred EEEEeccccCCCCCcCHHHHHHHHhCCCCCCCCc----------------cHHHHHHHHHHHhcC-CCCHHHHHHHHhCC
Confidence 9999999997556799999999999999999999 999999999999999 99999999999999
Q ss_pred cccCCCCHHHHHHHHHHHHhh
Q psy7831 174 ICRCTGYRPILDTFQSFATDA 194 (206)
Q Consensus 174 lCRCtgy~~i~~a~~~~a~~~ 194 (206)
|||||||++|++|++.++++.
T Consensus 147 lCRCtgy~~i~~a~~~~~~~~ 167 (1332)
T 3unc_A 147 LCRCTGYRPILQGFRTFAKNG 167 (1332)
T ss_dssp CCSSSCSHHHHHHHGGGC---
T ss_pred cccCCCchhHHHHHHHHhhcC
Confidence 999999999999999999864
No 9
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=100.00 E-value=2.7e-49 Score=324.30 Aligned_cols=157 Identities=31% Similarity=0.600 Sum_probs=147.4
Q ss_pred CCCCCceEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccccCCCcccccccccchhhhh
Q psy7831 8 LPKAGKEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYV 87 (206)
Q Consensus 8 ~~~~~~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~ 87 (206)
++...|.++|+|||+.+++ +++|+++||++||+.++++++|++|++|.||+|+|+|||+ +++||++++
T Consensus 5 ~~~~~m~i~~~ing~~~~~--~v~~~~tlL~~Lr~~~gl~g~~~~C~~G~CGaC~V~vdG~----------~v~sC~~~~ 72 (168)
T 1t3q_A 5 EESQLMRISATINGKPRVF--YVEPRMHLADALREVVGLTGTKIGCEQGVCGSCTILIDGA----------PMRSCLTLA 72 (168)
T ss_dssp --CCCEEEEEEETTEEEEE--EECTTSBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEETTE----------EEEGGGSBG
T ss_pred CCCCcceEEEEECCEEEEE--ecCCCCcHHHHHHhcCCCCccccCCCCCCCCCcEEEECCC----------EeechhhHH
Confidence 4455688999999999999 8999999999999988999999999999999999999998 999999999
Q ss_pred hhcCCCeEEEEcCCCCCCCCccHHHHHHHHcCCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHH
Q psy7831 88 QMCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVE 167 (206)
Q Consensus 88 ~~~~g~~I~TvEgL~~~~~~~~~vq~a~~~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~ 167 (206)
.+++|.+|+|||||++. ..+||+|++|++++++|||||+ |||+|++++||++++ +|++++|+
T Consensus 73 ~~~~G~~v~Tiegl~~~-~~~~~~q~a~~~~~~~qCG~C~----------------pg~i~~a~~ll~~~~-~p~~~~i~ 134 (168)
T 1t3q_A 73 VQAEGCSIETVEGLSQG-EKLNALQDSFRRHHALQCGFCT----------------AGMLATARSILAENP-APSRDEVR 134 (168)
T ss_dssp GGGTTCEEECGGGTCCS-SSCCHHHHHHHHTTCCSSCSSH----------------HHHHHHHHHHHHHCS-SCCHHHHH
T ss_pred HHhCCCeEEEEcCCCCc-cccCHHHHHHHHhCCCcCCCch----------------HHHHHHHHHHHhcCC-CCCHHHHH
Confidence 99999999999999874 4699999999999999999999 999999999999998 79999999
Q ss_pred HHhcCCcccCCCCHHHHHHHHHHHHhh
Q psy7831 168 RALGGNICRCTGYRPILDTFQSFATDA 194 (206)
Q Consensus 168 ~al~gnlCRCtgy~~i~~a~~~~a~~~ 194 (206)
++|+||+||||+|++|++|++.+++..
T Consensus 135 ~~l~gnlcRCt~y~~~v~A~~~~~~~~ 161 (168)
T 1t3q_A 135 EVMSGNLCRCTGYETIIDAITDPAVAE 161 (168)
T ss_dssp HHGGGSCCSSSCSHHHHHHHTCHHHHH
T ss_pred HHHcCCcccCCCchHHHHHHHHHHHHh
Confidence 999999999999999999999988754
No 10
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=100.00 E-value=6.6e-47 Score=375.15 Aligned_cols=150 Identities=30% Similarity=0.594 Sum_probs=144.7
Q ss_pred eEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccccCCCcccccccccchhhhhhhc-CC
Q psy7831 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMC-NG 92 (206)
Q Consensus 14 ~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~~~~-~g 92 (206)
.++|+|||+.+++ +++|+++|||+||++++++|+|+||++|.||||+|+|||+ +++||++++.++ +|
T Consensus 3 ~~~~~~ng~~~~~--~~~~~~~ll~~Lr~~~~l~g~k~gC~~G~CGaCtv~vdg~----------~v~sC~~~~~~~~~g 70 (907)
T 1dgj_A 3 TKTLIVNGMARRL--LVSPNDLLVDVLRSQLQLTSVKVGCGKGQCGACTVILDGK----------VVRACIIKMSRVAEN 70 (907)
T ss_dssp EEECEETTBCCEE--EECTTCBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEETTE----------EEEGGGCBGGGSCTT
T ss_pred eEEEEECCEEEEE--ecCCCCcHHHHHHHhcCCCccCCCCCCCCcCceEEEECCe----------EeehhHhHHHHHcCC
Confidence 5899999999999 8999999999999999999999999999999999999999 999999999999 99
Q ss_pred CeEEEEcCCCCCCCCccHHHHHHHHcCCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHhc-
Q psy7831 93 WSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALG- 171 (206)
Q Consensus 93 ~~I~TvEgL~~~~~~~~~vq~a~~~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al~- 171 (206)
++|+|||||++. +.+||||++|++++++|||||| |||||++++||++++ +|+++||+++|+
T Consensus 71 ~~i~TiEgl~~~-~~~~~~q~a~~~~~~~qCG~c~----------------pg~~~~~~~ll~~~~-~p~~~~i~~~~~~ 132 (907)
T 1dgj_A 71 ASVTTLEGIGAP-DCLHPLQHAWIQHGAAQCGFCT----------------PGFIVSAKALLDENV-APSREDVRDWFQK 132 (907)
T ss_dssp CEEECGGGTCBT-TBCCHHHHHHHHHTCCSSCTTH----------------HHHHHHHHHHHHHCS-SCCHHHHHHHHHH
T ss_pred CcEEEECCCCCC-cccCHHHHHHHHcCCCCCCcCh----------------hHHHHHHHHHHhcCC-CCCHHHHHHHHHh
Confidence 999999999864 5799999999999999999999 999999999999999 899999999999
Q ss_pred -CCcccCCCCHHHHHHHHHHHHh
Q psy7831 172 -GNICRCTGYRPILDTFQSFATD 193 (206)
Q Consensus 172 -gnlCRCtgy~~i~~a~~~~a~~ 193 (206)
|||||||+|.+|++|++++++.
T Consensus 133 ~gnlcRctgY~~i~~a~~~aa~~ 155 (907)
T 1dgj_A 133 HHNICRCTGYKPLVDAVMDAAAI 155 (907)
T ss_dssp TTCCCSSSCSHHHHHHHHHHHHH
T ss_pred cCCCcccccHHHHHHHHHHHHHh
Confidence 9999999999999999988765
No 11
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=100.00 E-value=9.8e-47 Score=373.90 Aligned_cols=150 Identities=32% Similarity=0.651 Sum_probs=144.8
Q ss_pred eEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccccCCCcccccccccchhhhhhhc-CC
Q psy7831 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMC-NG 92 (206)
Q Consensus 14 ~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~~~~-~g 92 (206)
.++|+|||+++++ +++|+++|||+||++++++|+|.||++|.||||+|+|||+ +++||++++.++ +|
T Consensus 3 ~~~~~~ng~~~~~--~~~~~~~ll~~Lr~~~~l~g~k~gC~~g~CGaCtv~vdg~----------~~~sC~~~~~~~~~g 70 (907)
T 1vlb_A 3 QKVITVNGIEQNL--FVDAEALLSDVLRQQLGLTGVKVGCEQGQCGACSVILDGK----------VVRACVTKMKRVADG 70 (907)
T ss_dssp EEEEEETTEEEEE--EECTTSBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEETTE----------EEEGGGCBGGGSCTT
T ss_pred eEEEEECCEEEEE--ecCCCChHHHHHHHhcCCCeecCCCCCCCcCccEEEECCe----------EeechHhHHHHHcCC
Confidence 5899999999999 8999999999999999999999999999999999999999 999999999999 99
Q ss_pred CeEEEEcCCCCCCCCccHHHHHHHHcCCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHhc-
Q psy7831 93 WSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALG- 171 (206)
Q Consensus 93 ~~I~TvEgL~~~~~~~~~vq~a~~~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al~- 171 (206)
++|+|||||++. +.+||||++|++++++|||||| |||||++++||++++ +|+++||+++|+
T Consensus 71 ~~i~Tiegl~~~-~~~~~~q~a~~~~~~~qCG~c~----------------pg~~~~~~~ll~~~~-~p~~~~i~~~~~~ 132 (907)
T 1vlb_A 71 AQITTIEGVGQP-ENLHPLQKAWVLHGGAQCGFCS----------------PGFIVSAKGLLDTNA-DPSREDVRDWFQK 132 (907)
T ss_dssp CEEECHHHHCBT-TBCCHHHHHHHHHTCCSSCTTH----------------HHHHHHHHHHHTTCS-SCCHHHHHHHHHH
T ss_pred CcEEEECCCCCC-cCcCHHHHHHHHcCCCCCCcCh----------------HHHHHHHHHHHHcCC-CCCHHHHHHHHHh
Confidence 999999999864 5799999999999999999999 999999999999999 899999999999
Q ss_pred -CCcccCCCCHHHHHHHHHHHHh
Q psy7831 172 -GNICRCTGYRPILDTFQSFATD 193 (206)
Q Consensus 172 -gnlCRCtgy~~i~~a~~~~a~~ 193 (206)
|||||||+|.+|++|++++++.
T Consensus 133 ~gn~cRctgY~~i~~a~~~aa~~ 155 (907)
T 1vlb_A 133 HRNACRCTGYKPLVDAVMDAAAV 155 (907)
T ss_dssp TTCCCSSSCSHHHHHHHHHHHHH
T ss_pred cCCCccccchHHHHHHHHHHHHh
Confidence 9999999999999999988765
No 12
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=99.92 E-value=4.9e-25 Score=193.65 Aligned_cols=156 Identities=21% Similarity=0.376 Sum_probs=117.8
Q ss_pred ccccCCCC-CCCceEEEEECCEEEEEeecCCC-CCcHHHHHHh---hcC-CCCCcccCCCCCccceEEEEccccCCCccc
Q psy7831 2 VYREDPLP-KAGKEVKFALNEKFYTVGEDVPV-GTRLVDFIRD---VAG-LKGTKYMCREGGCGVCTVMVKSRHPVTKEL 75 (206)
Q Consensus 2 ~~~~~p~~-~~~~~i~f~vNG~~~~v~~~~~p-~~tLLd~LR~---~~~-l~g~K~gC~eG~CGACtVlVdG~~~~~~~~ 75 (206)
||||||.. +.+... +.|++ ++++ +++|||+||+ ++. .++++.+|++|.||+|+|+|||+
T Consensus 40 I~R~~p~~~~~~p~~------~~~~v--~v~~~~~tlLdaL~~i~~~~~ptl~~~~~C~~G~CGsC~V~InG~------- 104 (282)
T 3vr8_B 40 IYRFNPEEPGAKPKL------QKFDV--DLDKCGTMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNIAGE------- 104 (282)
T ss_pred EEEeCCCCCCCCCCc------EEEEE--EeCCCCCcHHHHHHhcCcccCCceeecCCCCCCCCCCCEEEECCE-------
Confidence 79999985 333334 56888 7888 9999999996 223 47999999999999999999999
Q ss_pred ccccccchhhhhhhcCCCeEEEEcCCCCCC-------------CCccHHHH-----------------------HHH-Hc
Q psy7831 76 LVYSVNACLVYVQMCNGWSIYTIDGLGDKK-------------HGYHKVQS-----------------------RLA-LM 118 (206)
Q Consensus 76 ~~~~v~sCl~~~~~~~g~~I~TvEgL~~~~-------------~~~~~vq~-----------------------a~~-~~ 118 (206)
+++||.+++.+..| +++|||||.+.+ +.|+.|+. .+. -.
T Consensus 105 ---~~laC~t~v~~~~~-~~~tIepL~~~pVikDLvvD~~~f~~~~~~v~p~l~~~~~~~~~~~~~~qs~~~~~~~~~~~ 180 (282)
T 3vr8_B 105 ---NTLACICNIDQNTS-KTTKIYPLPHMFVIKDLVPDMNLFYAQYASIQPWLQKKTKINLGEKQQYQSIKEQEKLDGLY 180 (282)
T ss_pred ---EecchhhhHhHhcC-CcEEeccCCCCceeeccccccHHHHHHHHHHhhhcCCCCCCCCCchhcccCHHHHHHHHhhh
Confidence 99999999987655 689999998765 11222111 111 24
Q ss_pred CCCccccCCCCcccccccc-ccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHh-cCCcccCC
Q psy7831 119 NGTQCGYCSPGMVMAMHRT-QCGYCSPGMVMAMHSFLMEHDYKVGKADVERAL-GGNICRCT 178 (206)
Q Consensus 119 ~~~QCG~Ct~~~~~~~~~~-~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al-~gnlCRCt 178 (206)
.+++||.|+ ++||+.|. +.+|.||..++.++.++.+.++..+.++++... ...+.+|+
T Consensus 181 ~CI~CG~C~--~aCP~~~~~~~~~lGP~~li~a~r~~~d~rd~~~~erl~~l~~~~~l~~C~ 240 (282)
T 3vr8_B 181 ECILCACCS--ASCPSYWWNADKYLGPAVLMQAYRWIIDSRDDSAAERLARMQDGFSAFKCH 240 (282)
T ss_pred hCcccCcCc--ccCCceeccCCcCCCHHHHHHHHHHHhCCcccchHHHHHHHhhcCCcccCh
Confidence 599999999 99999975 578999999999999887665344455565432 35677776
No 13
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=99.86 E-value=2.1e-21 Score=164.94 Aligned_cols=156 Identities=17% Similarity=0.344 Sum_probs=118.0
Q ss_pred ccccCCCCC-CCceEEEEECCEEEEEeecCCCCCcHHHHHHhh---cCC-CCCcccCCCCCccceEEEEccccCCCcccc
Q psy7831 2 VYREDPLPK-AGKEVKFALNEKFYTVGEDVPVGTRLVDFIRDV---AGL-KGTKYMCREGGCGVCTVMVKSRHPVTKELL 76 (206)
Q Consensus 2 ~~~~~p~~~-~~~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~---~~l-~g~K~gC~eG~CGACtVlVdG~~~~~~~~~ 76 (206)
||||||..+ .+..+ +.+++ ++++++||||+|++. +.. .+++++|++|.||+|+|.|||+
T Consensus 9 i~R~~~~~~~~~~~~------~~~~v--~~~~~~tlL~~l~~~~~~~~~~l~~~~~c~~g~Cg~C~v~i~G~-------- 72 (241)
T 2bs2_B 9 VFKYDPQSAVSKPHF------QEYKI--EEAPSMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMINGR-------- 72 (241)
T ss_dssp EEECCTTCTTCCCEE------EEEEE--ECCTTCBHHHHHHHHHHHTCTTCCCCCSSSSSSSCTTEEEETTE--------
T ss_pred EEEeCCCCCCCCceE------EEEEE--eCCCCChHHHHHHHhchhcCCCCccCCCCCCCCCCCCEeEECCC--------
Confidence 899999987 44444 57888 899999999999862 232 4899999999999999999999
Q ss_pred cccccchhhhhhhcCCCeEEEEcCCCCCC-------------CCc-----------------------cHHHH--HHHHc
Q psy7831 77 VYSVNACLVYVQMCNGWSIYTIDGLGDKK-------------HGY-----------------------HKVQS--RLALM 118 (206)
Q Consensus 77 ~~~v~sCl~~~~~~~g~~I~TvEgL~~~~-------------~~~-----------------------~~vq~--a~~~~ 118 (206)
+++||.+++.+++| +++|||||.+.+ +.+ .+.+. .....
T Consensus 73 --~~~aC~~~~~~~~g-~~~~ie~l~~~pvikDLvvD~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (241)
T 2bs2_B 73 --PSLACRTLTKDFED-GVITLLPLPAFKLIKDLSVDTGNWFNGMSQRVESWIHAQKEHDISKLEERIEPEVAQEVFELD 149 (241)
T ss_dssp --EEEGGGCBGGGCTT-SEEEEECCTTSEEEETTEEECHHHHHHHHHHTTCSCCCSSCCCTTSCCCCCCHHHHHHHHHHH
T ss_pred --eecchhCcHhHcCC-CeEEEecCCCCCcceeceeeCHHHHHHHHHHhcCeeccCCCCCCccccccCCHHHHHHhhhhh
Confidence 89999999999877 789999998654 111 11111 23356
Q ss_pred CCCccccCCCCccccccccccCCCCchHHHHHHHHHHhC-CCCCCHHHHHHHh--cCCcccCCC
Q psy7831 119 NGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEH-DYKVGKADVERAL--GGNICRCTG 179 (206)
Q Consensus 119 ~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~-~~~~~~~ei~~al--~gnlCRCtg 179 (206)
.+++||.|+ .+||+.+....|.||..++.++.++.+. . +...++..+.+ ...+-+|+.
T Consensus 150 ~Ci~Cg~C~--~~CP~~~~~~~~~~p~~~~~~~~~~~~~~r-~~~~~~~~~~~~~~~~~~~C~~ 210 (241)
T 2bs2_B 150 RCIECGCCI--AACGTKIMREDFVGAAGLNRVVRFMIDPHD-ERTDEDYYELIGDDDGVFGCMT 210 (241)
T ss_dssp TCCCCCHHH--HTCHHHHHCTTCCHHHHHHHHHHHHTCTTC-CCCHHHHHHHHCSTTTGGGCCC
T ss_pred hhhccCcCc--ccCCCCccCCCCCCHHHHHHHHHHhhCccc-cccHHHHHHHHhcccCcccCcc
Confidence 899999999 9999999888999999999888877543 3 33333333344 456666663
No 14
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=99.85 E-value=4.4e-21 Score=164.65 Aligned_cols=157 Identities=18% Similarity=0.283 Sum_probs=115.6
Q ss_pred ccccCCCCCC-CceEEEEECCEEEEEeecCCC-CCcHHHHHHhh----cCCCCCcccCCCCCccceEEEEccccCCCccc
Q psy7831 2 VYREDPLPKA-GKEVKFALNEKFYTVGEDVPV-GTRLVDFIRDV----AGLKGTKYMCREGGCGVCTVMVKSRHPVTKEL 75 (206)
Q Consensus 2 ~~~~~p~~~~-~~~i~f~vNG~~~~v~~~~~p-~~tLLd~LR~~----~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~ 75 (206)
||||||..+. +..+ +.|++ ++++ ++||||+|++. ....+++.+|++|.||+|+|+|||+
T Consensus 16 i~R~~~~~~~~~~~~------~~~~v--~~~~~~~tlLd~l~~~~~~~~p~l~~~~~c~~g~Cg~C~v~i~G~------- 80 (252)
T 2h88_B 16 IYRWDPDKPGDKPRM------QTYEV--DLNKCGPMVLDALIKIKNELDSTLTFRRSCREGICGSCAMNIAGG------- 80 (252)
T ss_dssp EEECCTTSTTSCCEE------EEEEE--EGGGSCSBHHHHHHHHHHHTCTTCCCCCSCSSSSSCTTEEEETTE-------
T ss_pred EEEeCCCCCCCCceE------EEEEE--ecCCCCChHHHHHHHhCcccCCCccccCCCCCCCCCCCEEEECCc-------
Confidence 7999998876 4445 67888 7888 99999999974 2357899999999999999999999
Q ss_pred ccccccchhhhhhhcCCCeEEEEcCCCCCC-------C------------C----------------ccHHHHH--HHHc
Q psy7831 76 LVYSVNACLVYVQMCNGWSIYTIDGLGDKK-------H------------G----------------YHKVQSR--LALM 118 (206)
Q Consensus 76 ~~~~v~sCl~~~~~~~g~~I~TvEgL~~~~-------~------------~----------------~~~vq~a--~~~~ 118 (206)
+++||.+++.+++|. ++|||||.+.+ + . ..+.... +...
T Consensus 81 ---~~~aC~~~~~~~~g~-~~~iepl~~~pvikDLvvD~~~~~~~~~~i~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 156 (252)
T 2h88_B 81 ---NTLACTKKIDPDLSK-TTKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDESKQGKEQYLQSIEDRQKLDGLY 156 (252)
T ss_dssp ---EEEGGGSBCCCCTTS-CEEEECSTTCBEEETTEECCHHHHHHHHHTCCSCCCSCCTTTTSSCCCCCHHHHHTTTTTT
T ss_pred ---EEccccCCHhHcCCC-ceEEecccCCCccccceeccHHHHHHhhhccCccccCCCCCCccccccCCHHHHHHhHhHH
Confidence 999999999998776 78999998654 0 0 0111111 1245
Q ss_pred CCCccccCCCCccccccccc-cCCCCchHHHHHHHHHHhCCCCCCHHHHHHHhc-CCcccCCC
Q psy7831 119 NGTQCGYCSPGMVMAMHRTQ-CGYCSPGMVMAMHSFLMEHDYKVGKADVERALG-GNICRCTG 179 (206)
Q Consensus 119 ~~~QCG~Ct~~~~~~~~~~~-~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al~-gnlCRCtg 179 (206)
.+++||+|+ .+||+.+.. ..|.||..++.++.++.+..+..+.++++...+ ..+-+|+.
T Consensus 157 ~Ci~CG~C~--~~CP~~~~~~~~~lgP~~~~~~~r~~~~~r~~~~~~r~~~~~~~~~~~~C~~ 217 (252)
T 2h88_B 157 ECILCACCS--TSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTEERLAQLQDPFSLYRCHT 217 (252)
T ss_dssp TCCCCCTTG--GGCHHHHHHTTTCCHHHHHHHHHHHHTCTTCCCHHHHHHTTCSTTTTTTCCC
T ss_pred hchhhCcch--hhCCCCccCCCCcCCHHHHHHHHHHhhCCcccchHHHHHHHhcccCCCcCcc
Confidence 799999999 999999754 479999999998887755441222334432221 34556654
No 15
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=99.84 E-value=3.2e-20 Score=157.26 Aligned_cols=156 Identities=19% Similarity=0.305 Sum_probs=115.8
Q ss_pred ccccCCCCCCCceEEEEECCEEEEEeecCCC--CCcHHHHHHhhc---CCCCCcccCCCCCccceEEEEccccCCCcccc
Q psy7831 2 VYREDPLPKAGKEVKFALNEKFYTVGEDVPV--GTRLVDFIRDVA---GLKGTKYMCREGGCGVCTVMVKSRHPVTKELL 76 (206)
Q Consensus 2 ~~~~~p~~~~~~~i~f~vNG~~~~v~~~~~p--~~tLLd~LR~~~---~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~ 76 (206)
||||||..+....+ +.+++ ++++ ++|||++||+.. +.++++.+|++|.||+|+|+|||+
T Consensus 7 i~R~~~~~~~~~~~------~~~~v--~~~~~~~~tll~~l~~~~~~~~~l~~~~~C~~g~Cg~C~v~v~G~-------- 70 (238)
T 2wdq_B 7 IYRYNPDVDDAPRM------QDYTL--EADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGK-------- 70 (238)
T ss_dssp EEECCTTTCSSCEE------EEEEE--ECCTTCCCBHHHHHHHHHHHCTTCCCCCSSSSSSSCTTEEEETTE--------
T ss_pred EEEcCCCCCCCCce------EEEEe--ecCCCCCChHHHHHHHhcccCCCccccccCCCCCCCCCEEEECCE--------
Confidence 89999998865555 57888 7888 999999999864 678999999999999999999999
Q ss_pred cccccchhhhhhh--cCCCeEEEEcCCCCCCC----------CccHHHH------------------------H--HHHc
Q psy7831 77 VYSVNACLVYVQM--CNGWSIYTIDGLGDKKH----------GYHKVQS------------------------R--LALM 118 (206)
Q Consensus 77 ~~~v~sCl~~~~~--~~g~~I~TvEgL~~~~~----------~~~~vq~------------------------a--~~~~ 118 (206)
+++||.+++.+ +.|++ +|||||.+.+- .+..+|+ . +...
T Consensus 71 --~~laC~~~~~~~g~~~~~-~~ie~l~~~pvi~dlv~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (238)
T 2wdq_B 71 --NGLACITPISALNQPGKK-IVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLY 147 (238)
T ss_dssp --EEEGGGCBGGGTCCTTSC-EEEECCTTSBEEETTEECCHHHHHHHHHTCCSCCCCCSSCCSSSCCCCHHHHHTTTTTT
T ss_pred --EEcccccchhhhccCCCC-EEEeeCCCCcchhhceechHHHHHHHHhhcCccccCcCCCCcccccCCHHHHHHHhccc
Confidence 99999999999 77766 89999986431 0111221 1 1145
Q ss_pred CCCccccCCCCcccccccccc-CCCCchHHHHHHHHHHhCCCCCCHHHHHHHhc--CCcccCCC
Q psy7831 119 NGTQCGYCSPGMVMAMHRTQC-GYCSPGMVMAMHSFLMEHDYKVGKADVERALG--GNICRCTG 179 (206)
Q Consensus 119 ~~~QCG~Ct~~~~~~~~~~~~-~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al~--gnlCRCtg 179 (206)
.+++||.|. .+||+.+... .|.||..++.++.++.+..+..+.+.++ .+. .++-+|+.
T Consensus 148 ~Ci~Cg~C~--~~CP~~~~~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~C~~ 208 (238)
T 2wdq_B 148 ECILCACCS--TSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLD-GLSDAFSVFRCHS 208 (238)
T ss_dssp TCCCCCTTG--GGCHHHHHCTTTSCCHHHHHHHHHHHTCTTCCCHHHHHH-TTCSTTTTTTCCC
T ss_pred cccccCCch--hhCcCCccCCCCCCCHHHHHHHHHHHhCCcccchHHHHH-HHhccCCCCcCcc
Confidence 789999999 9999997755 4999988888877764433122234443 332 24555654
No 16
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=99.76 E-value=2.2e-18 Score=146.37 Aligned_cols=155 Identities=19% Similarity=0.314 Sum_probs=113.1
Q ss_pred ccccCCCCCCCceEEEEECCEEEEEeecCCCCCcHHHHHHhh----cCCCCCcccCCCCCccceEEEEccccCCCccccc
Q psy7831 2 VYREDPLPKAGKEVKFALNEKFYTVGEDVPVGTRLVDFIRDV----AGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLV 77 (206)
Q Consensus 2 ~~~~~p~~~~~~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~----~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~~ 77 (206)
||||||..+....+ +.+++ ++++++|||++|++. .+...++.+|+.|.||+|+|.|||+
T Consensus 10 i~R~~~~~~~~~~~------~~~~~--~~~~~~tll~al~~~~~~~~p~l~~~~~c~~G~Cg~C~v~v~G~--------- 72 (243)
T 1kf6_B 10 VVRYNPEVDTAPHS------AFYEV--PYDATTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNV--------- 72 (243)
T ss_dssp EEECCTTTCSSCEE------EEEEE--EECTTCBHHHHHHHHHHHTCTTCCCCCCCSSSSSCCCEEEETTE---------
T ss_pred EEEcCCCCCCCCee------EEEEE--ecCCCChHHHHHHHcCcccCCCcccccCCCCCcCCCCEeEECCE---------
Confidence 89999998866555 56778 789999999999873 2345799999999999999999998
Q ss_pred ccccchhhhhhhcCCCeEEEEcCCCCCC---CC---cc----------------------------HHH--HHHHHcCCC
Q psy7831 78 YSVNACLVYVQMCNGWSIYTIDGLGDKK---HG---YH----------------------------KVQ--SRLALMNGT 121 (206)
Q Consensus 78 ~~v~sCl~~~~~~~g~~I~TvEgL~~~~---~~---~~----------------------------~vq--~a~~~~~~~ 121 (206)
+++||.+++.+..+ ++|||||.... +. +. +.. ..+....++
T Consensus 73 -~~~aC~~~~~~~~~--~~~i~~l~~~~~~kdl~~dl~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Ci 149 (243)
T 1kf6_B 73 -PKLACKTFLRDYTD--GMKVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGCI 149 (243)
T ss_dssp -EEEGGGCBGGGCTT--CEEEECCTTSCEEETTEECCHHHHHHHHHTCCSCCSCCCCGGGCCCCCCHHHHHTTGGGGCCC
T ss_pred -EEeeeeeEHhhCCC--cEEEEecCCCCccceeEEecHHHHHHHHhcCCeeccCcCCCccccccCCHHHHHHhhhhhhcc
Confidence 99999999998754 48999997643 00 00 001 013356799
Q ss_pred ccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHhc-CCcccCC
Q psy7831 122 QCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALG-GNICRCT 178 (206)
Q Consensus 122 QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al~-gnlCRCt 178 (206)
+||.|. .+||..+....|.||..++.++.++.+..+..+.+.+..... .+.-+|+
T Consensus 150 ~Cg~C~--~~CP~~~~~~~~~gP~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~C~ 205 (243)
T 1kf6_B 150 NCGLCY--AACPQFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCT 205 (243)
T ss_dssp CCCHHH--HHCHHHHHCTTSCCHHHHHHHHHHHTCTTCCCTHHHHHHHHSTTTGGGCC
T ss_pred ccCccc--cccCCCcccCCCCCHHHHHHHHHHhhCccccchHHHHHHHhccCCcccCc
Confidence 999999 999998876669999988888777644331223344443222 3455555
No 17
>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain, unknown function; 1.94A {Helicobacter pylori}
Probab=99.37 E-value=1.4e-12 Score=122.36 Aligned_cols=141 Identities=9% Similarity=0.099 Sum_probs=99.9
Q ss_pred ccccCCCCCCCceEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccccCCCccccccccc
Q psy7831 2 VYREDPLPKAGKEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVN 81 (206)
Q Consensus 2 ~~~~~p~~~~~~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~~~~v~ 81 (206)
||||||..+.+... ++|+| ++++++++||.|... . ..++|. +|.|+|||+ |++
T Consensus 29 i~R~~p~~~~~p~~------~~y~v--~~~~~~~vLd~L~~i-k----~l~fr~----sCam~ING~----------~~l 81 (514)
T 3kwl_A 29 VFRFETNKDYNPAY------ESYFL--EYQEDQYLLDLLKQL-K----GVSYSE----NIALKINQI----------AVF 81 (514)
T ss_dssp EEECBTTSCSCCEE------EEEEE--ECCTTCBHHHHHTTS-T----TCCCCS----SCCEEETTE----------EEC
T ss_pred EEEeCCCCCCCCce------EEEEE--eCCCCCcHHHHHHHh-h----hCeeec----cceEEECCE----------ehh
Confidence 79999988766555 67888 899999999999863 3 334555 899999999 877
Q ss_pred chhhhhhhcC---CCeEEEEcCCCCCC-------------CCccHH--------HHHHHHcCCCccccCCCCcccccccc
Q psy7831 82 ACLVYVQMCN---GWSIYTIDGLGDKK-------------HGYHKV--------QSRLALMNGTQCGYCSPGMVMAMHRT 137 (206)
Q Consensus 82 sCl~~~~~~~---g~~I~TvEgL~~~~-------------~~~~~v--------q~a~~~~~~~QCG~Ct~~~~~~~~~~ 137 (206)
+ .+.+..+. |. .+|||||.+.+ +.|+.| ++-....+.. .-|+ ++||+.
T Consensus 82 a-~t~~~~~~~~~~~-~i~iePl~~~pvikDLvvD~~~f~~~~~~i~~~~p~~~~~~~~~~~~~--~~C~--~aCp~~-- 153 (514)
T 3kwl_A 82 E-DAKVSDLVAFFSK-EWVLDPLSKRYALKDLMIDEKAVLKNYEDFFKQVPYITKGEKEELEKF--IQIN--FINPQT-- 153 (514)
T ss_dssp S-CCBHHHHHHHHCS-EEEEECSCSTTEEETTEECHHHHHGGGHHHHHTCTTSCHHHHHGGGGT--GGGG--GTCCCC--
T ss_pred h-hhhHHHHhhccCC-cEEEEECCCCcccccceeccHHHHHHHHHhhcCCCCCCHHHHHHHhhc--Chhh--ccCCCC--
Confidence 7 44443321 33 57999999876 345555 1111222222 4888 999993
Q ss_pred ccCCCCchHHHHHHHHHHhCCCCCCHHHHHHHh---cCCcccCCC
Q psy7831 138 QCGYCSPGMVMAMHSFLMEHDYKVGKADVERAL---GGNICRCTG 179 (206)
Q Consensus 138 ~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~~al---~gnlCRCtg 179 (206)
..+|.||+.++.++.++.++++ -.. |..+.+ ...+.+||.
T Consensus 154 ~~~f~Gpa~l~~a~r~~~d~rd-~~~-~rl~~l~~~~~gv~~C~~ 196 (514)
T 3kwl_A 154 NPKYLGDGFFLYVKWLMKRYPT-ERD-RLLEMISQPESGVMNFLS 196 (514)
T ss_dssp CTTCCCHHHHHHHHHHHHHCGG-GHH-HHHHHTCCTTTSGGGCCC
T ss_pred CcccCcHHHHHHHHHHhcCCcc-hHH-HHHHHhhcCccccccccc
Confidence 5889999999999999998873 233 444566 356888876
No 18
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=99.09 E-value=5.7e-11 Score=112.62 Aligned_cols=101 Identities=22% Similarity=0.325 Sum_probs=79.8
Q ss_pred EEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCC----CcccC-C-CCCccceEEEEccccCCCcccccccccchhhhhh
Q psy7831 15 VKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKG----TKYMC-R-EGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQ 88 (206)
Q Consensus 15 i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g----~K~gC-~-eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~~ 88 (206)
++|+|||+.++ +++++|||++||+. ++.. .+.+| . .|.||+|+|.|||. .+++||.+++.
T Consensus 2 v~~~ing~~v~----v~~g~tiL~a~~~~-gi~ip~lC~~~~~~~~~G~Cg~C~V~v~g~---------~~~~aC~t~v~ 67 (574)
T 3c8y_A 2 KTIIINGVQFN----TDEDTTILKFARDN-NIDISALCFLNNCNNDINKCEICTVEVEGT---------GLVTACDTLIE 67 (574)
T ss_dssp EEEEETTEEEE----ECCCCBHHHHHHHT-TCCCCCSSCBTTBCCSSSCCCTTEEEETTT---------EEEEGGGCBCC
T ss_pred eEEEECCEEEE----eCCCCHHHHHHHHc-CCCCCcccCCCCCCCCcccCCCCEEEeCCC---------cccccCCCCcc
Confidence 78999999764 57899999999984 5521 12344 4 89999999999996 15899999987
Q ss_pred hcCCCeEEEEcCCCCCCCCccHHHHHHHHcCCCccccCCCCcccc
Q psy7831 89 MCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMA 133 (206)
Q Consensus 89 ~~~g~~I~TvEgL~~~~~~~~~vq~a~~~~~~~QCG~Ct~~~~~~ 133 (206)
+|..|.|.++.... .-+.+++.|...+..+|++|.++..|+
T Consensus 68 --~gm~V~T~~~~~~~--~r~~~lelll~~h~~~C~~C~~~~~C~ 108 (574)
T 3c8y_A 68 --DGMIINTNSDAVNE--KIKSRISQLLDIHEFKCGPCNRRENCE 108 (574)
T ss_dssp --TTCEEESSCHHHHH--HHHHHHHHHHTTSCCCCTTCTTTTSCH
T ss_pred --cceeEEecchhhhh--hHHHHHHHHHhccCCCCCcCCCCcchH
Confidence 79999999988542 236788999999999999999554444
No 19
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=98.75 E-value=3.9e-08 Score=71.94 Aligned_cols=77 Identities=14% Similarity=0.230 Sum_probs=57.4
Q ss_pred eEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCC-CCCccceEEEEccccCC--Cc-------ccccccccch
Q psy7831 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCR-EGGCGVCTVMVKSRHPV--TK-------ELLVYSVNAC 83 (206)
Q Consensus 14 ~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~-eG~CGACtVlVdG~~~~--~~-------~~~~~~v~sC 83 (206)
+|+|++||+.+++ +++++++||++|++. ++.+++++|+ .|.||+|.|.|.+-... .. ....-.+++|
T Consensus 2 ~v~i~~~g~~~~~--~~~~g~tll~a~~~~-gi~gi~~~C~G~G~Cg~C~v~v~~g~~~~~~~~e~~~L~~~~~g~rLaC 78 (93)
T 1l5p_A 2 TITAVKGGVKKQL--KFEDDQTLFTVLTEA-GLMSADDTCQGNKACGKCICKHVSGKVAAAEDDEKEFLEDQPANARLAC 78 (93)
T ss_dssp EEEEEETTEEEEE--ECCTTEEHHHHHHTT-TSSCCTTSCSSSSSSCCCEEEEEESCCCCCCHHHHHHHTTSCTTEEEGG
T ss_pred eEEEEeCCcEEEE--EECCCChHHHHHHHc-CCCcCCcCCCCcCCcCCCEEEECCCcCCCCCHHHHHHhcCCCCCcEEee
Confidence 4779999998899 899999999999984 8878999999 99999999999542111 10 1222347888
Q ss_pred hhhh-hhcCCC
Q psy7831 84 LVYV-QMCNGW 93 (206)
Q Consensus 84 l~~~-~~~~g~ 93 (206)
...+ ..++|.
T Consensus 79 q~~~~~d~~g~ 89 (93)
T 1l5p_A 79 AITLSGENDGA 89 (93)
T ss_dssp GCEECGGGTTC
T ss_pred ECEECCCCCce
Confidence 8644 345554
No 20
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=98.61 E-value=5.3e-08 Score=71.82 Aligned_cols=72 Identities=14% Similarity=0.313 Sum_probs=53.7
Q ss_pred ceEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEE-ccccCCCc--c-----cccccccchh
Q psy7831 13 KEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMV-KSRHPVTK--E-----LLVYSVNACL 84 (206)
Q Consensus 13 ~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlV-dG~~~~~~--~-----~~~~~v~sCl 84 (206)
..|+|.+||..+++ .++++++||++|++ .|+ .++++|+.|.||+|.|.| +|...... . ...-.+++|.
T Consensus 3 ~~v~~~~~~~~~~~--~~~~g~tlL~a~~~-~gi-~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq 78 (98)
T 1iue_A 3 YNITLRTNDGEKKI--ECNEDEYILDASER-QNV-ELPYSCRGGSCSTCAAKLVEGEVDNDDQSYLDEEQIKKKYILLCT 78 (98)
T ss_dssp EEEEEEETTEEEEE--EEETTSCHHHHHHH-TTC-CCCCSSCSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGG
T ss_pred EEEEEEeCCCeEEE--EeCCCCcHHHHHHH-cCC-CCCCCCCCCcCCCCEEEEeeCCccccccccCCHHHHhCCeEEEeE
Confidence 46888888866677 78899999999998 477 799999999999999997 77531111 1 1112478998
Q ss_pred hhhh
Q psy7831 85 VYVQ 88 (206)
Q Consensus 85 ~~~~ 88 (206)
..+.
T Consensus 79 ~~~~ 82 (98)
T 1iue_A 79 CYPK 82 (98)
T ss_dssp CEES
T ss_pred CEEC
Confidence 7764
No 21
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=98.50 E-value=8.6e-08 Score=70.49 Aligned_cols=53 Identities=13% Similarity=0.303 Sum_probs=45.1
Q ss_pred CceEEEEEC---CEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEE-ccc
Q psy7831 12 GKEVKFALN---EKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMV-KSR 68 (206)
Q Consensus 12 ~~~i~f~vN---G~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlV-dG~ 68 (206)
++.+++++| |..+++ +++++++||++|++ .|+. ++++|+.|.||+|.|.| +|.
T Consensus 2 ~~~~~v~~~~~~~~~~~~--~~~~g~tlL~a~~~-~gi~-i~~~C~~G~Cg~C~v~v~~G~ 58 (98)
T 1jq4_A 2 QRVHTITAVTEDGESLRF--ECRSDEDVITAALR-QNIF-LMSSCREGGCATCKALCSEGD 58 (98)
T ss_dssp CCEEEEEEEETTTEEEEE--EEESCCTHHHHHHH-HTCC-CCCSCCSSCCCCCCBCEEECC
T ss_pred CCcEEEEEEecCCCcEEE--EeCCCChHHHHHHH-cCCC-CcCCCCCCCCCCCEEEEEcCc
Confidence 446778888 777778 78899999999998 4774 99999999999999998 775
No 22
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=98.47 E-value=2.2e-07 Score=68.36 Aligned_cols=72 Identities=18% Similarity=0.307 Sum_probs=52.5
Q ss_pred ceEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEE-ccccCCCc--c-----cccccccchh
Q psy7831 13 KEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMV-KSRHPVTK--E-----LLVYSVNACL 84 (206)
Q Consensus 13 ~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlV-dG~~~~~~--~-----~~~~~v~sCl 84 (206)
..|+|..++..+++ +++++++||++|++ .|+. ++++|+.|.||+|.|.| +|...... . ...-.+++|.
T Consensus 3 ~~v~~~~~~~~~~~--~~~~g~tlL~a~~~-~gi~-i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq 78 (97)
T 1a70_A 3 YKVTLVTPTGNVEF--QCPDDVYILDAAEE-EGID-LPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCA 78 (97)
T ss_dssp EEEEEEETTEEEEE--EEETTSCHHHHHHH-TTCC-CCCSSSSSCSSTTEEEEEESCEECTTCCSSCHHHHHHTEEEGGG
T ss_pred EEEEEEeCCceEEE--EeCCCCcHHHHHHH-cCCC-cccCCCCcCCCCCeEEEccCCcCccccccCCHHHhhCCeEEEeE
Confidence 45778776655677 78899999999998 4774 99999999999999998 77521111 1 1112478998
Q ss_pred hhhh
Q psy7831 85 VYVQ 88 (206)
Q Consensus 85 ~~~~ 88 (206)
..+.
T Consensus 79 ~~~~ 82 (97)
T 1a70_A 79 AYPV 82 (97)
T ss_dssp CEES
T ss_pred CEEC
Confidence 7754
No 23
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=98.47 E-value=1.2e-07 Score=69.05 Aligned_cols=71 Identities=24% Similarity=0.435 Sum_probs=52.0
Q ss_pred ceEEEE-ECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEc-cccCCCc-------ccccccccch
Q psy7831 13 KEVKFA-LNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVK-SRHPVTK-------ELLVYSVNAC 83 (206)
Q Consensus 13 ~~i~f~-vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVd-G~~~~~~-------~~~~~~v~sC 83 (206)
..|+|. .|| ..++ ++++++|||+++++ .|+ .++++|+.|.||+|.|.|. |...... +.....+++|
T Consensus 2 ~~v~~~~~~g-~~~~--~~~~g~tlL~a~~~-~gi-~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~L~~~~~~~g~~LaC 76 (95)
T 1frr_A 2 YKTVLKTPSG-EFTL--DVPEGTTILDAAEE-AGY-DLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTC 76 (95)
T ss_dssp EEEEEEETTE-EEEE--EECTTCCHHHHHHH-TTC-CCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETT
T ss_pred eEEEEEeCCC-cEEE--EeCCCCcHHHHHHH-cCC-CCCCCCCCcCCCCCEEEEEeCCccccccccCCHHHHhCCcEEee
Confidence 357886 788 4566 68899999999987 477 6899999999999999996 6421111 0112258899
Q ss_pred hhhhh
Q psy7831 84 LVYVQ 88 (206)
Q Consensus 84 l~~~~ 88 (206)
.+.+.
T Consensus 77 ~~~~~ 81 (95)
T 1frr_A 77 IAIPE 81 (95)
T ss_dssp TCEES
T ss_pred ECEEC
Confidence 98765
No 24
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=98.42 E-value=1.6e-07 Score=68.93 Aligned_cols=72 Identities=17% Similarity=0.338 Sum_probs=51.7
Q ss_pred ceEEEEECC--EEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEE-ccccCCCc-------ccccccccc
Q psy7831 13 KEVKFALNE--KFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMV-KSRHPVTK-------ELLVYSVNA 82 (206)
Q Consensus 13 ~~i~f~vNG--~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlV-dG~~~~~~-------~~~~~~v~s 82 (206)
..|+|..|+ ...++ +++++++||+++++ .|+ .++++|+.|.||+|.|.| +|...... +...-.+++
T Consensus 3 ~~V~~~~~~~~~~~~~--~~~~g~tlL~a~~~-~gi-~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~La 78 (98)
T 1frd_A 3 YQVRLINKKQDIDTTI--EIDEETTILDGAEE-NGI-ELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALL 78 (98)
T ss_dssp EEEEEEETTTTEEEEE--EEETTSCHHHHHHH-TTC-CCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEEG
T ss_pred eEEEEEeCCCCCCEEE--EeCCCCcHHHHHHH-cCC-CcccCCCCCCCCCCEEEEEeCCccccccccCCHHHhhCCcEEE
Confidence 457888754 24566 67899999999987 477 599999999999999999 67521111 111225889
Q ss_pred hhhhhh
Q psy7831 83 CLVYVQ 88 (206)
Q Consensus 83 Cl~~~~ 88 (206)
|...+.
T Consensus 79 C~~~~~ 84 (98)
T 1frd_A 79 CVTYPR 84 (98)
T ss_dssp GGCEES
T ss_pred eECEEC
Confidence 988764
No 25
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=98.41 E-value=4.5e-07 Score=66.13 Aligned_cols=71 Identities=21% Similarity=0.322 Sum_probs=52.0
Q ss_pred ceEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEE-ccccCCCc--cc-----ccccccchh
Q psy7831 13 KEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMV-KSRHPVTK--EL-----LVYSVNACL 84 (206)
Q Consensus 13 ~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlV-dG~~~~~~--~~-----~~~~v~sCl 84 (206)
..|+|..+|..+++ .++++++||++|++. + .++++|+.|.||+|.|.| +|...... .+ ..-.+++|.
T Consensus 2 ~~V~~~~~~~~~~~--~~~~g~tlL~a~~~~-g--~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~~~~~g~~LaCq 76 (93)
T 1wri_A 2 YKVTLKTPDGDITF--DVEPGERLIDIGSEK-A--DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCI 76 (93)
T ss_dssp EEEEEEETTEEEEE--EECTTSCHHHHHHHH-S--CCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTT
T ss_pred EEEEEEECCCeEEE--EECCCCcHHHHHHHC-c--CCCCCCCCCCCCCCEEEEecCccCccccccCCHHHHhCCcEEeee
Confidence 35788878766677 789999999999985 6 799999999999999998 77532111 11 112377888
Q ss_pred hhhh
Q psy7831 85 VYVQ 88 (206)
Q Consensus 85 ~~~~ 88 (206)
..+.
T Consensus 77 ~~~~ 80 (93)
T 1wri_A 77 AIPE 80 (93)
T ss_dssp CEES
T ss_pred CEEC
Confidence 7654
No 26
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=98.39 E-value=7.7e-07 Score=64.91 Aligned_cols=71 Identities=25% Similarity=0.442 Sum_probs=51.9
Q ss_pred eEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEE-ccccCCCcc-------cccccccchhh
Q psy7831 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMV-KSRHPVTKE-------LLVYSVNACLV 85 (206)
Q Consensus 14 ~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlV-dG~~~~~~~-------~~~~~v~sCl~ 85 (206)
+|+|..++..+++ +++++++||++|++ .|+ .++++|+.|.||+|.|.| +|....... ...-.+++|..
T Consensus 2 ~v~~~~~~g~~~~--~~~~g~tlL~a~~~-~gi-~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~ 77 (94)
T 1awd_A 2 KVTLKTPSGEETI--ECPEDTYILDAAEE-AGL-DLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVA 77 (94)
T ss_dssp EEEEEETTEEEEE--ECCTTSCHHHHHHH-TTC-CCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGC
T ss_pred EEEEEeCCCcEEE--EECCCCcHHHHHHH-cCC-CCCcCCCCCcCCCCEEEEEeCCcCccccccCCHHHHhCCcEEeeEC
Confidence 4778765545677 79999999999988 477 699999999999999998 775321110 11124788987
Q ss_pred hhh
Q psy7831 86 YVQ 88 (206)
Q Consensus 86 ~~~ 88 (206)
.+.
T Consensus 78 ~~~ 80 (94)
T 1awd_A 78 YPT 80 (94)
T ss_dssp EES
T ss_pred EEC
Confidence 654
No 27
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=98.35 E-value=5e-07 Score=66.91 Aligned_cols=51 Identities=18% Similarity=0.379 Sum_probs=44.0
Q ss_pred ceEEEE-ECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCC-CCCccceEEEEcc
Q psy7831 13 KEVKFA-LNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCR-EGGCGVCTVMVKS 67 (206)
Q Consensus 13 ~~i~f~-vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~-eG~CGACtVlVdG 67 (206)
..|+|. .||+.+++ .++++++||++|++. ++. ++++|+ .|.||+|.|.|.+
T Consensus 4 ~~v~~~~~~g~~~~~--~~~~g~tlL~a~~~~-gi~-i~~~C~g~G~Cg~C~v~v~~ 56 (103)
T 2wlb_A 4 IKVFFVTPEGREIMI--EGNEGDSILDLAHAN-NID-LEGACEGSVACSTCHVIVDP 56 (103)
T ss_dssp EEEEEECTTCCEEEE--EECTTCBHHHHHHHT-TCC-CCCTTTTSSCCSTTEEEECH
T ss_pred eEEEEEeCCCCEEEE--EECCCCHHHHHHHHc-CCC-cCcCCCCCCCcCCCEEEECC
Confidence 468888 89977778 788999999999984 774 899999 7999999999954
No 28
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=98.21 E-value=1.4e-06 Score=63.95 Aligned_cols=72 Identities=18% Similarity=0.393 Sum_probs=50.1
Q ss_pred ceEEEEECCE--EEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEE-ccccCCCc-------ccccccccc
Q psy7831 13 KEVKFALNEK--FYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMV-KSRHPVTK-------ELLVYSVNA 82 (206)
Q Consensus 13 ~~i~f~vNG~--~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlV-dG~~~~~~-------~~~~~~v~s 82 (206)
..|+|..++. ..++ +++++++||+++++ .|+ .++++|+.|.||+|.|.| +|...... +...-.+++
T Consensus 3 ~~V~~~~~~~~~~~~~--~~~~g~tlL~a~~~-~gi-~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~La 78 (98)
T 1czp_A 3 FKVTLINEAEGTKHEI--EVPDDEYILDAAEE-QGY-DLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLT 78 (98)
T ss_dssp EEEEEEETTTTEEEEE--EEETTSCHHHHHHH-TTC-CCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEG
T ss_pred eEEEEEeCCCCCcEEE--EeCCCCCHHHHHHH-cCC-CccCCCCCCCCCCCeEEEccCCcCccccccCCHHHhhCCeEEe
Confidence 3566766432 4566 67899999999987 477 499999999999999998 77521111 011224788
Q ss_pred hhhhhh
Q psy7831 83 CLVYVQ 88 (206)
Q Consensus 83 Cl~~~~ 88 (206)
|...+.
T Consensus 79 Cq~~~~ 84 (98)
T 1czp_A 79 CVAYPT 84 (98)
T ss_dssp GGCEES
T ss_pred eeCEEC
Confidence 987654
No 29
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=98.09 E-value=4.5e-06 Score=61.99 Aligned_cols=51 Identities=22% Similarity=0.389 Sum_probs=43.0
Q ss_pred eEEE-EECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCC-CCCccceEEEEcc
Q psy7831 14 EVKF-ALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCR-EGGCGVCTVMVKS 67 (206)
Q Consensus 14 ~i~f-~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~-eG~CGACtVlVdG 67 (206)
.|+| ..||+..++ .+.+++|||+++++ .++.+..++|+ .|.||.|.|.|..
T Consensus 2 ~V~~~~~~g~~~~~--~~~~g~tlLeaa~~-~gi~~i~~~C~g~G~CgtC~v~v~~ 54 (106)
T 1xlq_A 2 KVVYVSHDGTRREL--DVADGVSLMQAAVS-NGIYDIVGDCGGSASCATCHVYVNE 54 (106)
T ss_dssp EEEEECTTSCEEEE--ECCTTCBHHHHHHH-TTCTTSCCTTCSSSSSCTTEEEECT
T ss_pred EEEEEeCCCCEEEE--EECCCCcHHHHHHH-cCCCCCCcCCCCCcccCcCEEEECC
Confidence 4777 578977778 79999999999987 57767999995 8999999999843
No 30
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=98.08 E-value=5.9e-06 Score=61.67 Aligned_cols=78 Identities=18% Similarity=0.328 Sum_probs=57.0
Q ss_pred EEEE-ECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCC-CCCccceEEEE-ccc-c----CC--------C-ccccc
Q psy7831 15 VKFA-LNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCR-EGGCGVCTVMV-KSR-H----PV--------T-KELLV 77 (206)
Q Consensus 15 i~f~-vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~-eG~CGACtVlV-dG~-~----~~--------~-~~~~~ 77 (206)
|+|. .||+.+++ ++.++.+||++|++ .++.+..++|+ .|.||.|.|.| +|+ + +. . .....
T Consensus 3 vt~~~~~G~~~~~--~~~~g~tll~a~~~-~gi~~i~~~C~G~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~ 79 (104)
T 3lxf_A 3 ILVTTRDGTRTEI--QAEPGLSLMEALRD-AGIDELLALCGGCCSCATCHVLVAPAFADRLPALSGDENDLLDSSDHRTP 79 (104)
T ss_dssp EEEECTTSCEEEE--ECCTTSBHHHHHHH-TTCTTCCCTTCSSSSCSTTEEEECGGGGGGSCCCCHHHHHHHHTSTTCCT
T ss_pred EEEEeCCCCEEEE--EECCCChHHHHHHH-cCCCCCCcCCCCCCCCCCCEEEECCcccccCCCCCHHHHHHhccccccCC
Confidence 5554 58988899 89999999999987 58877999999 89999999998 453 1 11 0 12223
Q ss_pred ccccchhhhhhh-cCCCeE
Q psy7831 78 YSVNACLVYVQM-CNGWSI 95 (206)
Q Consensus 78 ~~v~sCl~~~~~-~~g~~I 95 (206)
-.+++|...+.+ ++|-.|
T Consensus 80 g~rLaCq~~~~~dl~gl~v 98 (104)
T 3lxf_A 80 HSRLSCQITINDKLEGLEV 98 (104)
T ss_dssp TEEEGGGCBCCGGGTTCEE
T ss_pred CcEEEeeCEEccCCCCEEE
Confidence 358899887653 566544
No 31
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=98.06 E-value=2.1e-06 Score=63.66 Aligned_cols=73 Identities=19% Similarity=0.393 Sum_probs=53.2
Q ss_pred eEEE-EECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCC-CCCccceEEEEc-cc-----cCCC----------ccc
Q psy7831 14 EVKF-ALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCR-EGGCGVCTVMVK-SR-----HPVT----------KEL 75 (206)
Q Consensus 14 ~i~f-~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~-eG~CGACtVlVd-G~-----~~~~----------~~~ 75 (206)
.|+| ..+|+..++ .+.+++|||+.+++ .++.+..++|+ .|.||.|.|.|. |+ ++.. ...
T Consensus 2 ~V~~~~~~g~~~~~--~~~~g~tlL~aa~~-~gi~~i~~~C~g~G~CgtC~v~v~~G~~~~l~~~~~~e~~~L~~~~~~~ 78 (105)
T 1b9r_A 2 RVVFIDEQSGEYAV--DAQDGQSLMEVATQ-NGVPGIVAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQSTGEPM 78 (105)
T ss_dssp EEEECCTTTSCEEE--ECCTTCCTTHHHHH-HTCCCCCCSSTTSSCCCCCCCEECTTTHHHHTCCCTTHHHHHHTSCCCC
T ss_pred EEEEEeCCCCEEEE--EECCCChHHHHHHH-cCCCCcCcCCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhhcccccC
Confidence 4677 578966677 78999999999987 47767999998 699999999994 41 2221 222
Q ss_pred ccccccchhhhhhh
Q psy7831 76 LVYSVNACLVYVQM 89 (206)
Q Consensus 76 ~~~~v~sCl~~~~~ 89 (206)
..-.+++|...+..
T Consensus 79 ~~g~rLaCq~~~~~ 92 (105)
T 1b9r_A 79 TAGTRLSCQVFIDP 92 (105)
T ss_dssp CTTBSCGGGCCCCT
T ss_pred CCCcEeeeeCEecC
Confidence 23357899877654
No 32
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=98.06 E-value=4.4e-06 Score=64.83 Aligned_cols=79 Identities=20% Similarity=0.363 Sum_probs=57.6
Q ss_pred ceEEEE-ECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCC-CCCccceEEEE-ccc----c-CC---------Cccc
Q psy7831 13 KEVKFA-LNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCR-EGGCGVCTVMV-KSR----H-PV---------TKEL 75 (206)
Q Consensus 13 ~~i~f~-vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~-eG~CGACtVlV-dG~----~-~~---------~~~~ 75 (206)
..|+|. .+|+..++ ++.++++||+++++ .++.+..+.|+ .|.||.|.|.| +|+ + +. ...+
T Consensus 22 ~~Vt~~~~~G~~~~v--~~~~G~tLL~aa~~-~gi~gi~~~C~G~G~CgtC~v~v~~G~~~~l~~~~~~E~~~L~~~~e~ 98 (126)
T 3hui_A 22 AKINFVDHTGETRTV--EVEEGATVMEAAIR-NAIPGVEAECGGACACATCHVYVDEAWREKVGGPSPMEEDMLDFGYDV 98 (126)
T ss_dssp EEEEEECTTSCEEEE--EEETTSBHHHHHHT-TTCTTCCCTTSSSSCCSTTEEEECGGGHHHHCCCCHHHHHHHTTSSSC
T ss_pred eEEEEEeCCCCEEEE--EECCCCcHHHHHHH-cCCCCCccCCCCCCCCCCCEEEECCCcccccCCCCHHHhhhcCchhhc
Confidence 357777 78977778 78899999999987 48877999998 89999999998 442 1 11 1223
Q ss_pred ccccccchhhhhhh-cCCCe
Q psy7831 76 LVYSVNACLVYVQM-CNGWS 94 (206)
Q Consensus 76 ~~~~v~sCl~~~~~-~~g~~ 94 (206)
..-.+++|...+.. ++|-.
T Consensus 99 ~~g~RLaCQ~~~~~dldgl~ 118 (126)
T 3hui_A 99 RPNSRLSCQIKVSNELDGLI 118 (126)
T ss_dssp CTTEEEGGGCBCCGGGTTEE
T ss_pred cCCeEEeeeCEECcCCCcEE
Confidence 33458999887654 45543
No 33
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=98.05 E-value=5e-06 Score=61.72 Aligned_cols=51 Identities=24% Similarity=0.467 Sum_probs=42.8
Q ss_pred eEEE-EECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCC-CCCccceEEEEcc
Q psy7831 14 EVKF-ALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCR-EGGCGVCTVMVKS 67 (206)
Q Consensus 14 ~i~f-~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~-eG~CGACtVlVdG 67 (206)
.|+| ..+|+..++ .+.+++|||+++++ .++.++.++|+ .|.||.|.|.|..
T Consensus 2 ~v~~~~~~g~~~~~--~~~~g~tlL~aa~~-~gi~~i~~~C~g~G~CgtC~v~v~~ 54 (106)
T 1uwm_A 2 KIIFIEHNGTRHEV--EAKPGLTVMEAARD-NGVPGIDADCGGACACSTCHAYVDP 54 (106)
T ss_dssp EEEEECTTCCEEEE--ECCTTSBHHHHHHT-TTCTTCCCTTSSSSSSCTTEEEECH
T ss_pred EEEEEeCCCCEEEE--EECCCCcHHHHHHH-cCCCCcccCCCCCCCcCcCEEEECC
Confidence 4777 478976778 79999999999987 47767999995 8999999999843
No 34
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=97.86 E-value=1.3e-05 Score=60.11 Aligned_cols=51 Identities=14% Similarity=0.356 Sum_probs=39.2
Q ss_pred eEEEEEC-C---EEEEEeecCCCCCcHHHHHHhhcCCCCCcccC-CCCCccceEEEEc-cc
Q psy7831 14 EVKFALN-E---KFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMC-REGGCGVCTVMVK-SR 68 (206)
Q Consensus 14 ~i~f~vN-G---~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC-~eG~CGACtVlVd-G~ 68 (206)
.|+|..| | ...++ .++++++||+++++. |+ .++++| +.|.||+|.|.|. |.
T Consensus 3 ~i~~~~~~g~~~~~~~~--~~~~g~tlL~a~~~~-gi-~i~~~C~~~G~Cg~C~v~v~~G~ 59 (111)
T 1i7h_A 3 KIVILPHQDLCPDGAVL--EANSGETILDAALRN-GI-EIEHACEKSCACTTCHCIVREGF 59 (111)
T ss_dssp EEEECCBTTTBTTCEEE--ECCTTCBHHHHHHHT-TC-CCCCTTSSSSCCSTTEEEEEECG
T ss_pred EEEEEeCCCcCCCCeEE--EeCCCCcHHHHHHHc-CC-CCcccCCCCCcCCCCEEEEccCc
Confidence 4777762 2 22355 688999999999884 77 489999 5999999999984 54
No 35
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=97.83 E-value=1.1e-05 Score=78.70 Aligned_cols=106 Identities=23% Similarity=0.389 Sum_probs=70.7
Q ss_pred eEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccC------CCCCccceEEEEccccCCC---------cc----
Q psy7831 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMC------REGGCGVCTVMVKSRHPVT---------KE---- 74 (206)
Q Consensus 14 ~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC------~eG~CGACtVlVdG~~~~~---------~~---- 74 (206)
+++|+|||++++ +++++|||++++. .|. -+...| ..|.|+.|.|.|+|.+-.. +.
T Consensus 1 mv~i~idg~~~~----v~~g~til~a~~~-~gi-~ip~~C~~~~~~~~G~C~~C~V~v~~~~~~~~g~~~~~~~G~~~~~ 74 (783)
T 3i9v_3 1 MVRVKVNDRIVE----VPPGTSVMDAVFH-AGY-DVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQ 74 (783)
T ss_dssp CEEEECSSCEEE----ECTTCBHHHHHHH-TTC-CCCCSSCCTTSCCCCCSCCSEEEEECC-----------------CC
T ss_pred CeEEEECCEEEE----eCCCChHHHHHHH-hCC-CccccCCCCCCCCCcccCCcEEEecccccccccccccccccccccc
Confidence 378999999764 5689999999987 454 245556 8999999999997521100 00
Q ss_pred cccccccchhhhhhhcCCCeEEEEcCCCCCCCCccHHH----HHHHHcCCCccccCCCCcccc
Q psy7831 75 LLVYSVNACLVYVQMCNGWSIYTIDGLGDKKHGYHKVQ----SRLALMNGTQCGYCSPGMVMA 133 (206)
Q Consensus 75 ~~~~~v~sCl~~~~~~~g~~I~TvEgL~~~~~~~~~vq----~a~~~~~~~QCG~Ct~~~~~~ 133 (206)
..-.++.||.+++. +|..|.|- + +.....| +-+...|-.-|..|-.+--|.
T Consensus 75 ~~~~~~~aC~t~v~--~gm~v~t~-----~-~~~~~~r~~~le~ll~nhp~dC~~C~~~g~C~ 129 (783)
T 3i9v_3 75 WQPKLAASCVTAVA--DGMVVDTL-----S-DVVREAQAGMVEFTLLNHPLDCPTCDKGGACE 129 (783)
T ss_dssp BCSSCEETTTCBCC--SSEEEESS-----S-HHHHHHHHHHHHHHHTSCCCCTTTCTTGGGCH
T ss_pred cCCCcccccCCCCC--CCCEEEEC-----C-HHHHHHHHHHHHHHHhcCCCCCccCCCCCCCH
Confidence 01247899999986 57777652 1 2233333 344567888899998655565
No 36
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=97.69 E-value=5.9e-05 Score=56.28 Aligned_cols=78 Identities=21% Similarity=0.335 Sum_probs=53.9
Q ss_pred eEEEE-ECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCC-CCccceEEEE-ccc----c-CC---------Ccccc
Q psy7831 14 EVKFA-LNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCRE-GGCGVCTVMV-KSR----H-PV---------TKELL 76 (206)
Q Consensus 14 ~i~f~-vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~e-G~CGACtVlV-dG~----~-~~---------~~~~~ 76 (206)
.|+|. .+|+.+++ .+.++.+||+++++ .++ ...+.|+. |.||.|.|.| +|+ + +. .....
T Consensus 7 ~v~~~~~~g~~~~~--~~~~g~tlL~aa~~-~gi-~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~ 82 (109)
T 2y5c_A 7 NVVFVDRSGQRIPV--SGRVGDNVLHLAQR-HGV-DLEGACEASLACSTCHVYVSEDHLDLLPPPEEREDDMLDMAPLLQ 82 (109)
T ss_dssp EEEEECTTSCEEEE--EEETTCBHHHHHHH-TTC-CCCCTTSSSSSCCTTEEEECHHHHTTSCCCCHHHHHHHHTSTTCC
T ss_pred EEEEEcCCCCEEEE--EECCCCcHHHHHHH-cCC-CCCcCCCCCcCcCccEEEECCcchhhcCCCCHHHHHHHhccccCC
Confidence 35553 48988888 78999999999987 466 58899987 9999999998 442 1 11 01223
Q ss_pred cccccchhhhhhh-cCCCeE
Q psy7831 77 VYSVNACLVYVQM-CNGWSI 95 (206)
Q Consensus 77 ~~~v~sCl~~~~~-~~g~~I 95 (206)
.-.+++|...+.. ++|-.|
T Consensus 83 ~g~rLaCq~~~~~d~~~~~v 102 (109)
T 2y5c_A 83 ENSRLGCQIVLTPELEGAEF 102 (109)
T ss_dssp TTEEEGGGCBCCGGGTTCEE
T ss_pred CCcEeeEEeEEecCCCeEEE
Confidence 3357899987654 445443
No 37
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=97.66 E-value=3.5e-05 Score=57.35 Aligned_cols=49 Identities=20% Similarity=0.429 Sum_probs=39.8
Q ss_pred eEEEE-ECCEEEEEeecCCCCCcHHHHHHhhcCCCCCc--ccCCC-CCccceEEEEc
Q psy7831 14 EVKFA-LNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTK--YMCRE-GGCGVCTVMVK 66 (206)
Q Consensus 14 ~i~f~-vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K--~gC~e-G~CGACtVlVd 66 (206)
.|+|. -+|+.+++ ++.++++||++++++ ++ ... +.|+. |.||.|.|.|.
T Consensus 8 ~V~~~~~~g~~~~v--~~~~g~tLL~aa~~~-gi-~i~~~~~Cgg~G~CgtC~v~v~ 60 (108)
T 2bt6_A 8 TVHFINRDGETLTT--KGKIGDSLLDVVVQN-NL-DIDGFGACEGTLACSTCHLIFE 60 (108)
T ss_dssp EEEEECTTSCEEEE--EEETTCBHHHHHHHT-TC-CCTTTTTTSSSSSBSTTEEECC
T ss_pred EEEEECCCCCEEEE--EECCCChHHHHHHHc-CC-CCCcccCCCCCcCcCCCEEEEC
Confidence 45554 46887888 789999999999874 55 467 99986 99999999995
No 38
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=97.60 E-value=3.8e-05 Score=59.61 Aligned_cols=70 Identities=16% Similarity=0.339 Sum_probs=50.0
Q ss_pred eEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEE-ccccCCC--c-----c-cccccccchh
Q psy7831 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMV-KSRHPVT--K-----E-LLVYSVNACL 84 (206)
Q Consensus 14 ~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlV-dG~~~~~--~-----~-~~~~~v~sCl 84 (206)
.++|++||+ .++ .+++++|||+++++ .|+ .+.++|+.|.||+|.|.| +|..... . + ...-.+++|.
T Consensus 29 ~i~i~~~g~-~~v--~v~~g~tlL~aa~~-~Gi-~i~~~C~~G~CgtC~v~v~~G~v~~~e~~~L~~~e~~~~g~rLaCq 103 (128)
T 1doi_A 29 DMDLDDEDY-GSL--EVNEGEYILEAAEA-QGY-DWPFSCRAGACANCAAIVLEGDIDMDMQQILSDEEVEDKNVRLTCI 103 (128)
T ss_dssp HSCCCTTTE-EEE--ECCTTSCHHHHHHH-TTC-CCCCSSSSSSSSTTEEEEEESCEEECCCSSSCHHHHHTSCEEEGGG
T ss_pred EEEEEeCCc-EEE--EECCCCcHHHHHHH-cCC-CCccCCCccCCCCCEeEEecCCcCchhhccCCHhHhccCCEEEEEE
Confidence 466788996 245 67899999999987 476 589999999999999998 6642111 0 1 1223478888
Q ss_pred hhhh
Q psy7831 85 VYVQ 88 (206)
Q Consensus 85 ~~~~ 88 (206)
..+.
T Consensus 104 ~~~~ 107 (128)
T 1doi_A 104 GSPD 107 (128)
T ss_dssp EEEC
T ss_pred eEEc
Confidence 7653
No 39
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=97.46 E-value=0.00012 Score=63.65 Aligned_cols=50 Identities=24% Similarity=0.426 Sum_probs=40.4
Q ss_pred EEEEEC---CEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEE-ccc
Q psy7831 15 VKFALN---EKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMV-KSR 68 (206)
Q Consensus 15 i~f~vN---G~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlV-dG~ 68 (206)
.+++++ |...++ ++++++|||+.+++ .|+ ...++|+.|.||.|.|.| +|.
T Consensus 4 ~~v~~~~~~~~~~~~--~~~~g~tll~a~~~-~gi-~i~~~C~~g~Cg~C~v~v~~G~ 57 (338)
T 1krh_A 4 HQVALQFEDGVTRFI--CIAQGETLSDAAYR-QQI-NIPMDCREGECGTCRAFCESGN 57 (338)
T ss_dssp EEEEEECTTSCEEEE--EECTTCCHHHHHHH-TTC-CCSCSCSSSSSCTTEEEEEECC
T ss_pred eEEEEEEcCCCcEEE--EeCCCCcHHHHHHH-cCC-CcccCCCCcCCCCCEEEEecCc
Confidence 345555 656677 78899999999987 476 589999999999999998 674
No 40
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=97.31 E-value=0.00024 Score=61.72 Aligned_cols=51 Identities=20% Similarity=0.525 Sum_probs=39.1
Q ss_pred eEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEE-ccc
Q psy7831 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMV-KSR 68 (206)
Q Consensus 14 ~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlV-dG~ 68 (206)
.+++++.+...++ ++.++.+||+.+++ .|+ ...++|+.|.||+|.|.| +|.
T Consensus 237 ~~~v~~~~~~~~~--~~~~~~~ll~a~~~-~g~-~~~~~C~~G~Cg~C~~~v~~G~ 288 (321)
T 2pia_A 237 PFTVRLSRSGTSF--EIPANRSILEVLRD-ANV-RVPSSCESGTCGSCKTALCSGE 288 (321)
T ss_dssp CEEEEETTTCCEE--EECTTSCHHHHHHH-TTC-CCCCSCSSSSSCTTEEEEEESC
T ss_pred cEEEEEeCCCeEE--EECCCCcHHHHHHH-cCC-CCCCCCCCCCCCCCEEEEecCc
Confidence 4555565433455 56789999999987 576 589999999999999987 564
No 41
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=97.08 E-value=0.00048 Score=51.48 Aligned_cols=40 Identities=28% Similarity=0.555 Sum_probs=33.5
Q ss_pred EEeecCCCCCcHHHHHHhhcCCCCCcccCC-CCCccceEEEE-ccc
Q psy7831 25 TVGEDVPVGTRLVDFIRDVAGLKGTKYMCR-EGGCGVCTVMV-KSR 68 (206)
Q Consensus 25 ~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~-eG~CGACtVlV-dG~ 68 (206)
++ .+.+++|||+++++ .|+ .+.++|+ .|.||.|.|.| +|.
T Consensus 18 ~v--~~~~g~tlL~aa~~-~Gi-~i~~~C~g~G~CgtC~v~v~~G~ 59 (113)
T 3ah7_A 18 TV--EVKPGTNILELAHD-HHI-EMESACGGVKACTTCHCIVRKGF 59 (113)
T ss_dssp EE--ECCTTCBHHHHHHH-TTC-CCCCTTCSSSSCSTTEEEEEESG
T ss_pred EE--EECCCCcHHHHHHH-cCC-CCCcCCCCCCCcCCCEEEEcCCc
Confidence 45 67899999999987 466 5889998 69999999998 464
No 42
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=96.85 E-value=0.0002 Score=55.16 Aligned_cols=79 Identities=18% Similarity=0.300 Sum_probs=16.0
Q ss_pred ceEEEE-ECCEEEEEeecCCCCCcHHHHHHhhcCCCCCc--ccCC-CCCccceEEEEc-c-cc----CCC---------c
Q psy7831 13 KEVKFA-LNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTK--YMCR-EGGCGVCTVMVK-S-RH----PVT---------K 73 (206)
Q Consensus 13 ~~i~f~-vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K--~gC~-eG~CGACtVlVd-G-~~----~~~---------~ 73 (206)
..|+|. -+|+.+++ ++.++++||++++++ ++. .. ..|+ .|.||.|.|.|. + .+ +.. .
T Consensus 6 v~Vtf~~~~G~~~~v--~~~~G~tLl~aa~~~-gi~-i~g~~~CgG~g~CgtC~v~v~~~~~~~l~~~~~~E~~~L~~~~ 81 (123)
T 3n9z_C 6 ITVHFINRDGETLTT--KGKVGDSLLDVVVEN-NLD-IDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAY 81 (123)
T ss_dssp -----------------------------------------CTTCSSSSCSTTBC--------------CHHHHHHCC--
T ss_pred EEEEEEeCCCCEEEE--EECCCCcHHHHHHHc-CCC-CCcCCCCCCCCEeCCCeeEEeccccccCCCCChHHHhhhcccc
Confidence 346664 58988888 899999999999873 553 55 8898 799999999885 2 21 111 1
Q ss_pred ccccccccchhhhhhh-cCCCeE
Q psy7831 74 ELLVYSVNACLVYVQM-CNGWSI 95 (206)
Q Consensus 74 ~~~~~~v~sCl~~~~~-~~g~~I 95 (206)
......++||.+.+.. ++|-.|
T Consensus 82 ~~~~~~RLaCQ~~v~~~ld~l~V 104 (123)
T 3n9z_C 82 GLTDRSRLGCQICLTKSMDNMTV 104 (123)
T ss_dssp ------CBCC-------------
T ss_pred cccCCeEEeeEeEEccCCCCEEE
Confidence 1223468999988765 445443
No 43
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=96.05 E-value=0.01 Score=54.21 Aligned_cols=73 Identities=18% Similarity=0.145 Sum_probs=50.7
Q ss_pred CceEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCC----CcccCCCCC--ccceEEEEccccCCCcccccccccchhh
Q psy7831 12 GKEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKG----TKYMCREGG--CGVCTVMVKSRHPVTKELLVYSVNACLV 85 (206)
Q Consensus 12 ~~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g----~K~gC~eG~--CGACtVlVdG~~~~~~~~~~~~v~sCl~ 85 (206)
+..++|++||+++++ .+++||+++|... +... .++ =..|. ||+|.|.|||. ..+++|.+
T Consensus 13 ~~~v~~~~dg~~~~~----~~g~ti~~a~~~~-g~~~~~~~~~~-~p~g~~~~~~c~v~v~g~---------~~~~ac~~ 77 (493)
T 1y56_A 13 GKKVTIYFEGKELEA----YEGEKLPVALLAN-EIYWLTTSNEG-RKRGAFTFGPVPMTVNGV---------KGLEARRI 77 (493)
T ss_dssp SCEEEEEETTEEEEE----ETTCBHHHHHHHT-TCCCCEECTTS-CEECSSSSSCCEEBSSSC---------TTEEGGGC
T ss_pred CCeEEEEECCEEEEe----cCCCHHHHHHHHC-CCceecCCCCC-CCCccccceEEEEEECCE---------ecccceeE
Confidence 357999999998654 5799999999863 3322 222 11244 78899999996 13899999
Q ss_pred hhhhcCCCeEEEEcCC
Q psy7831 86 YVQMCNGWSIYTIDGL 101 (206)
Q Consensus 86 ~~~~~~g~~I~TvEgL 101 (206)
++. +|..+.|-.+.
T Consensus 78 ~v~--~Gm~v~t~~~~ 91 (493)
T 1y56_A 78 KVK--DGMKIERQGYY 91 (493)
T ss_dssp BCC--TTCEEBCCCTT
T ss_pred Ecc--cCcEEecccCC
Confidence 874 57766665443
No 44
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=95.83 E-value=0.008 Score=57.81 Aligned_cols=70 Identities=27% Similarity=0.445 Sum_probs=48.9
Q ss_pred ceEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCC-CCCccceEEEE-cccc-CCCc------ccccccccch
Q psy7831 13 KEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCR-EGGCGVCTVMV-KSRH-PVTK------ELLVYSVNAC 83 (206)
Q Consensus 13 ~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~-eG~CGACtVlV-dG~~-~~~~------~~~~~~v~sC 83 (206)
..|+|.-+|+.+ ++++++|||+.+++. ++ ...++|+ .|.||.|.|.| .|.. +... +...-.+++|
T Consensus 4 ~~V~~~~sg~~v----~v~~G~tLLeAa~~a-Gi-~ip~~C~G~G~CGtC~v~V~~G~v~~~e~~~Ls~~e~~~G~rLaC 77 (631)
T 3zyy_X 4 YKVLFKPDQKEV----AISENTNLMEALNLA-GI-NIKTVCGGAGTCGKCLVRVVDGQKRVESYGKLKQEEIAQGYVLAC 77 (631)
T ss_dssp EEEEEETTTEEE----EECTTSCHHHHHHHH-TC-CCCCSCCCSSCCSTTEEEEEESCEEESCCTTCCHHHHHTTEEETT
T ss_pred eEEEEecCCeEE----EECCCCcHHHHHHHc-CC-CCCcCCCCCCcCCCCEEEEeeCcccccccccCCHHHhcCCcEEee
Confidence 357787788765 456899999999874 76 6899999 89999999987 5542 1110 1112247888
Q ss_pred hhhhh
Q psy7831 84 LVYVQ 88 (206)
Q Consensus 84 l~~~~ 88 (206)
...+.
T Consensus 78 qa~~~ 82 (631)
T 3zyy_X 78 QTYPE 82 (631)
T ss_dssp TEEEC
T ss_pred eCEEC
Confidence 87554
No 45
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=94.29 E-value=0.08 Score=52.63 Aligned_cols=80 Identities=13% Similarity=0.092 Sum_probs=57.9
Q ss_pred CceEEEEECCEEEEEeecCCCCCcHHHHHHhhcCCC----CCccc------CCCCCccceEEEEc---cccCCCcccccc
Q psy7831 12 GKEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLK----GTKYM------CREGGCGVCTVMVK---SRHPVTKELLVY 78 (206)
Q Consensus 12 ~~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~----g~K~g------C~eG~CGACtVlVd---G~~~~~~~~~~~ 78 (206)
+.+++|++||+.++. .++.||+..|... |.. ++|++ |..|.|..|.|.|+ |- .....
T Consensus 20 ~~~~~~~~dG~~~~~----~~g~tv~~aL~~~-Gv~~~~~s~~~~~prg~~~~~~~c~~~~v~v~~~~~g-----~~~~~ 89 (965)
T 2gag_A 20 EEALSLTVDGAKLSA----FRGDTVASALLAN-GVRRAGNSLYLDRPRGIFAAGVEEPNALVTVSARHEQ-----DIDES 89 (965)
T ss_dssp EEEEEEEETTEEEEE----EETCBHHHHHHHT-TCCBCSCCTTTCCCCBCCCSSTTCCSCEEEECCCSTT-----CCCEE
T ss_pred CCeEEEEECCEEEEe----cCCCHHHHHHHHc-CCeEeecCCCCCCCcccccCCccCCceEEEEccCCCC-----CcCCc
Confidence 357999999998754 5689999999764 322 22332 77899999999999 51 01112
Q ss_pred cccchhhhhhhcCCCeEEEEcCCCC
Q psy7831 79 SVNACLVYVQMCNGWSIYTIDGLGD 103 (206)
Q Consensus 79 ~v~sCl~~~~~~~g~~I~TvEgL~~ 103 (206)
++.+|.+.+. +|..+.|..|++.
T Consensus 90 ~~~ac~~~~~--~gm~~~~~~glg~ 112 (965)
T 2gag_A 90 MLPATTVPVT--EDLNATLLSGLGV 112 (965)
T ss_dssp EEEGGGCBCC--TTEEEEECSSCBC
T ss_pred cccceeeecc--cceEeecccCCCC
Confidence 7899988874 6888888888864
No 46
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=90.04 E-value=0.34 Score=33.70 Aligned_cols=43 Identities=23% Similarity=0.245 Sum_probs=33.0
Q ss_pred ceEEEEECCEE-EEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccc
Q psy7831 13 KEVKFALNEKF-YTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSR 68 (206)
Q Consensus 13 ~~i~f~vNG~~-~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~ 68 (206)
|.+++++||.. .++ +++++.|+.|.|+. +++..- ...|++||+
T Consensus 1 M~v~Vkl~g~~~~~~--ev~~g~Tv~dLL~~-Lgl~~~----------~VvV~vNG~ 44 (74)
T 2l32_A 1 MNVTVEVVGEETSEV--AVDDDGTYADLVRA-VDLSPH----------EVTVLVDGR 44 (74)
T ss_dssp CEEEEECSSSSEEEE--ECSTTCSHHHHHHT-TCCCSS----------CCCEECCCC
T ss_pred CEEEEEEeCccceeE--EcCCCCcHHHHHHH-cCCCcc----------eEEEEECCE
Confidence 67899999974 234 78899999999987 676432 227999998
No 47
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=89.87 E-value=0.58 Score=32.80 Aligned_cols=66 Identities=14% Similarity=0.126 Sum_probs=40.7
Q ss_pred EEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccccCCCcccccccccchhhhhhhc-CCCe
Q psy7831 16 KFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMC-NGWS 94 (206)
Q Consensus 16 ~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~~~~-~g~~ 94 (206)
.++|||+++++ +...+.||.++|.+ +++.. =..++|.+||. -+..-...-..+ +|..
T Consensus 2 ~I~vNGe~~e~--~~~~~~Tl~~LL~~-l~~~~---------~~~vAVavNg~----------iVpr~~~~~~~L~dGD~ 59 (78)
T 2k5p_A 2 NLTVNGKPSTV--DGAESLNVTELLSA-LKVAQ---------AEYVTVELNGE----------VLEREAFDATTVKDGDA 59 (78)
T ss_dssp EEEETTEEEEC--SSCSCEEHHHHHHH-HTCSC---------TTTCCEEETTE----------ECCTTHHHHCEECSSBC
T ss_pred EEEECCEEEEc--CCCCCCcHHHHHHH-cCCCC---------CCcEEEEECCE----------ECChHHcCcccCCCCCE
Confidence 57999998765 32257899999986 56541 01347999998 333332222222 5666
Q ss_pred EEEEcCCCC
Q psy7831 95 IYTIDGLGD 103 (206)
Q Consensus 95 I~TvEgL~~ 103 (206)
|.-+-..+.
T Consensus 60 IEIv~~VgG 68 (78)
T 2k5p_A 60 VEFLYFMGG 68 (78)
T ss_dssp EEECCCCCC
T ss_pred EEEEeeecC
Confidence 666666653
No 48
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=87.80 E-value=1.7 Score=31.14 Aligned_cols=41 Identities=15% Similarity=0.096 Sum_probs=28.2
Q ss_pred ceEEEEECCEEEEEeecCCCC-CcHHHHHHhhcCCCCCcccCCCCCccceEEEEccc
Q psy7831 13 KEVKFALNEKFYTVGEDVPVG-TRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSR 68 (206)
Q Consensus 13 ~~i~f~vNG~~~~v~~~~~p~-~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~ 68 (206)
..+.++|||++++ ++.+ .||.++|.. +++.. ....|.|||.
T Consensus 19 ~~M~I~vNGe~~e----l~~~~~Tv~dLL~~-L~~~~----------~~vaVavNg~ 60 (87)
T 1tyg_B 19 GRHMLQLNGKDVK----WKKDTGTIQDLLAS-YQLEN----------KIVIVERNKE 60 (87)
T ss_dssp ---CEEETTEEEC----CSSSCCBHHHHHHH-TTCTT----------SCCEEEETTE
T ss_pred cceEEEECCEEEE----CCCCCCcHHHHHHH-hCCCC----------CCEEEEECCE
Confidence 3457899999765 4455 899999986 55431 2357999997
No 49
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=87.65 E-value=1.6 Score=30.02 Aligned_cols=62 Identities=13% Similarity=0.078 Sum_probs=39.9
Q ss_pred EEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccccCCCcccccccccchhhhhhhc-CCCe
Q psy7831 16 KFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMC-NGWS 94 (206)
Q Consensus 16 ~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~~~~-~g~~ 94 (206)
.++|||+++ +. ++.||.++|.+ +++.. ..++|.+||. -+..-...-..+ +|..
T Consensus 2 ~I~vNG~~~----e~-~~~Tl~~LL~~-l~~~~----------~~vAV~vNg~----------iVpr~~~~~~~L~dGD~ 55 (73)
T 2kl0_A 2 LVTINGEQR----EV-QSASVAALMTE-LDCTG----------GHFAVALNYD----------VVPRGKWDETPVTAGDE 55 (73)
T ss_dssp CEEETTEEE----CC-CCSBHHHHHHH-TTCCS----------SSCEEEESSS----------EECHHHHTTCBCCTTCE
T ss_pred EEEECCEEE----Ec-CCCcHHHHHHH-cCCCC----------CcEEEEECCE----------ECChHHcCcccCCCCCE
Confidence 478999975 45 67999999986 66642 2357999997 333332212222 5677
Q ss_pred EEEEcCCCC
Q psy7831 95 IYTIDGLGD 103 (206)
Q Consensus 95 I~TvEgL~~ 103 (206)
|.-+-..+.
T Consensus 56 veIv~~VgG 64 (73)
T 2kl0_A 56 IEILTPRQG 64 (73)
T ss_dssp EEEECCCCC
T ss_pred EEEEccccC
Confidence 777777664
No 50
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=79.29 E-value=3.5 Score=27.25 Aligned_cols=38 Identities=5% Similarity=0.249 Sum_probs=27.6
Q ss_pred EEEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccc
Q psy7831 16 KFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSR 68 (206)
Q Consensus 16 ~f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~ 68 (206)
.++|||+.++ .+.+.|+.+.|+. +++.. ....|.|||.
T Consensus 2 ~i~vNg~~~~----~~~~~tv~~ll~~-l~~~~----------~~v~vavN~~ 39 (66)
T 1f0z_A 2 QILFNDQAMQ----CAAGQTVHELLEQ-LDQRQ----------AGAALAINQQ 39 (66)
T ss_dssp CEEESSCEEC----CCTTCCHHHHHHH-HTCCC----------SSEEEEETTE
T ss_pred EEEECCEEEE----cCCCCcHHHHHHH-cCCCC----------CCEEEEECCE
Confidence 4789999764 4567899999986 45431 2457999997
No 51
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=76.49 E-value=4.3 Score=29.79 Aligned_cols=78 Identities=17% Similarity=0.234 Sum_probs=46.6
Q ss_pred CCCCCCceEEEEE-CCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEc--cccCCCcccccccccch
Q psy7831 7 PLPKAGKEVKFAL-NEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVK--SRHPVTKELLVYSVNAC 83 (206)
Q Consensus 7 p~~~~~~~i~f~v-NG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVd--G~~~~~~~~~~~~v~sC 83 (206)
|....+..+...+ |++...| ++.||+||-|.|...+...+. .+-.|.|-.. |. +....|...+.
T Consensus 12 ~~~~~~~~irvhLPNqQrT~V--~VrpG~tlrdAL~KaLk~R~L-------~pe~C~Vy~~~~~~----~~~IdWdtDi~ 78 (95)
T 2l05_A 12 PKSPQKPIVRVFLPNKQRTVV--PARCGVTVRDSLKKALMMRGL-------IPECCAVYRIQDGE----KKPIGWDTDIS 78 (95)
T ss_dssp CCCCCSCEEEEEETTTEEEEE--ECCTTCBHHHHHHHHHHHHTC-------CGGGEEEEEEETTE----EEEECTTSBGG
T ss_pred CCCCCccEEEEECCCCCeEEE--EecCCcCHHHHHHHHHHHcCC-------CHHHcEEEEcCCCC----ccccchhHhhh
Confidence 3444445565554 9999899 899999999998664433222 4567888854 42 11222333333
Q ss_pred hhhhhhcCCCeEEEEcCCCC
Q psy7831 84 LVYVQMCNGWSIYTIDGLGD 103 (206)
Q Consensus 84 l~~~~~~~g~~I~TvEgL~~ 103 (206)
.+.|.++ .||=|.+
T Consensus 79 -----~L~~eEL-~Ve~ld~ 92 (95)
T 2l05_A 79 -----WLTGEEL-HVEVLEN 92 (95)
T ss_dssp -----GGTTCEE-EEEESCC
T ss_pred -----hccCcEE-EEEEecC
Confidence 4566664 5665543
No 52
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=72.57 E-value=26 Score=25.68 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=47.9
Q ss_pred ceEEEE-ECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccccCCCcccccccccchhhhhhhcC
Q psy7831 13 KEVKFA-LNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMCN 91 (206)
Q Consensus 13 ~~i~f~-vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~~~~~~~~~~~~v~sCl~~~~~~~ 91 (206)
..++.. -|++...| ++.||++|-|.|...+...+. .+-.|.|-.... + ++....|.... ..+.
T Consensus 14 ~~irvhLPNqQrT~V--~VrpG~tlrdaL~KaLk~R~L-------~pe~C~Vy~~~~-~-~~~~I~WdtDi-----~~L~ 77 (96)
T 3ny5_A 14 PIVRVFLPNKQRTVV--PARCGVTVRDSLKKALMMRGL-------IPECCAVYRIQD-G-EKKPIGWDTDI-----SWLT 77 (96)
T ss_dssp CEEEEEETTTEEEEE--ECCTTCBHHHHHHHHHHTTTC-------CGGGEEEEECC-----CEEECTTBBG-----GGGT
T ss_pred CEEEEECCCCceEEE--EecCCcCHHHHHHHHHHHcCC-------ChHHeEEEEccC-C-CcCcccccccc-----hhcc
Confidence 345544 49999899 899999999999765544333 456788887531 1 12222233332 3667
Q ss_pred CCeEEEEcCCCCCC
Q psy7831 92 GWSIYTIDGLGDKK 105 (206)
Q Consensus 92 g~~I~TvEgL~~~~ 105 (206)
|.++ .||=|...+
T Consensus 78 geEL-~Ve~ld~~p 90 (96)
T 3ny5_A 78 GEEL-HVEVLENVP 90 (96)
T ss_dssp TCEE-EEEECCCCC
T ss_pred cceE-EehhhhcCC
Confidence 7776 688887543
No 53
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=71.99 E-value=9.5 Score=24.92 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=26.4
Q ss_pred EEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccc
Q psy7831 17 FALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSR 68 (206)
Q Consensus 17 f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~ 68 (206)
++|||+++ +. ++.|+.+.|+. +++. =....|.+||.
T Consensus 2 i~vNg~~~----~~-~~~tv~~ll~~-l~~~----------~~~v~vavN~~ 37 (64)
T 2cu3_A 2 VWLNGEPR----PL-EGKTLKEVLEE-MGVE----------LKGVAVLLNEE 37 (64)
T ss_dssp EEETTEEE----CC-TTCCHHHHHHH-HTBC----------GGGEEEEETTE
T ss_pred EEECCEEE----Ec-CCCcHHHHHHH-cCCC----------CCcEEEEECCE
Confidence 68999975 45 67899999986 4442 12457999997
No 54
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=63.22 E-value=11 Score=26.46 Aligned_cols=31 Identities=19% Similarity=0.207 Sum_probs=24.6
Q ss_pred CCCCceEEEEECCEEEEEeecCCCCCcHHHHHH
Q psy7831 9 PKAGKEVKFALNEKFYTVGEDVPVGTRLVDFIR 41 (206)
Q Consensus 9 ~~~~~~i~f~vNG~~~~v~~~~~p~~tLLd~LR 41 (206)
.++.+.|.++.+|+.+.+ ++++..|+.++-.
T Consensus 14 ~~~~~~i~Vk~~g~~~~i--~v~~~~TV~~LK~ 44 (95)
T 1v86_A 14 GKELVDLKIIWNKTKHDV--KVPLDSTGSELKQ 44 (95)
T ss_dssp CCCCEEEEEEETTEEEEE--EECTTSBHHHHHH
T ss_pred CCceEEEEEEECCEEEEE--EECCCCcHHHHHH
Confidence 334567777789999999 8999999988654
No 55
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=60.48 E-value=20 Score=25.18 Aligned_cols=41 Identities=24% Similarity=0.325 Sum_probs=31.0
Q ss_pred EEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEc
Q psy7831 17 FALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVK 66 (206)
Q Consensus 17 f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVd 66 (206)
|.-|++...| ++.||+||-|.|...+...+. .+-.|.|-..
T Consensus 7 hLPn~QrT~V--~VrpG~tlrdaL~KaLk~R~L-------~pe~C~V~~~ 47 (77)
T 1c1y_B 7 FLPNKQRTVV--NVRNGMSLHDCLMKALKVRGL-------QPECCAVFRL 47 (77)
T ss_dssp EETTTEEEEE--ECCTTCBHHHHHHHHHHTTTC-------CGGGEEEEEE
T ss_pred ECCCCceEEE--EecCCcCHHHHHHHHHHHcCC-------CHHHeEEEEe
Confidence 4459998899 899999999999775544433 4567888854
No 56
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=60.47 E-value=9.6 Score=27.59 Aligned_cols=34 Identities=26% Similarity=0.330 Sum_probs=25.7
Q ss_pred CceEEEE-ECCEEEEEeecCCCCCcHHHHHHhh---cCCC
Q psy7831 12 GKEVKFA-LNEKFYTVGEDVPVGTRLVDFIRDV---AGLK 47 (206)
Q Consensus 12 ~~~i~f~-vNG~~~~v~~~~~p~~tLLd~LR~~---~~l~ 47 (206)
.|.+++. -||+++.| .+.|+++|.++|.+- +++.
T Consensus 9 ~m~v~Vl~~n~rr~~V--Kvtp~t~L~~VL~eaC~K~gl~ 46 (90)
T 2al3_A 9 GSAVSVLAPNGRRHTV--KVTPSTVLLQVLEDTCRRQDFN 46 (90)
T ss_dssp -CCEEEECTTSCEEEE--CCCTTSBHHHHHHHHHHHTTCC
T ss_pred ccEEEEEcCCCcEEEE--EECCCCCHHHHHHHHHHHhCCC
Confidence 4555443 59999999 899999999999863 5553
No 57
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=60.20 E-value=7.8 Score=25.94 Aligned_cols=39 Identities=13% Similarity=0.138 Sum_probs=27.4
Q ss_pred EEEEECCEE----EEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccc
Q psy7831 15 VKFALNEKF----YTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSR 68 (206)
Q Consensus 15 i~f~vNG~~----~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~ 68 (206)
.+++|||+. +++ +.+.|+.+.|+. +++.. ....|.+||.
T Consensus 5 m~i~vNg~~~~~~~~~----~~~~tv~~Ll~~-l~~~~----------~~v~vavN~~ 47 (70)
T 1ryj_A 5 MKFTVITDDGKKILES----GAPRRIKDVLGE-LEIPI----------ETVVVKKNGQ 47 (70)
T ss_dssp EEEEEEETTEEEEEEE----SSCCBHHHHHHH-TTCCT----------TTEEEEETTE
T ss_pred EEEEEeCccCceeEEC----CCCCcHHHHHHH-hCCCC----------CCEEEEECCE
Confidence 577899986 544 456899999986 55421 2357999997
No 58
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=59.00 E-value=4.3 Score=33.31 Aligned_cols=17 Identities=29% Similarity=0.645 Sum_probs=15.3
Q ss_pred cccCCCCCccceEEEEc
Q psy7831 50 KYMCREGGCGVCTVMVK 66 (206)
Q Consensus 50 K~gC~eG~CGACtVlVd 66 (206)
+..|+.|.||+|.|.+.
T Consensus 223 ~m~CG~G~C~~C~~~~~ 239 (262)
T 1ep3_B 223 RMACGIGACYACVEHDK 239 (262)
T ss_dssp CCSSSSSSSCTTEEEET
T ss_pred cccCcccccccCCcccc
Confidence 67899999999999875
No 59
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=52.11 E-value=13 Score=25.60 Aligned_cols=33 Identities=12% Similarity=0.228 Sum_probs=25.2
Q ss_pred CCCCCCceEEEE-ECCEEEEEeecCCCCCcHHHHHH
Q psy7831 7 PLPKAGKEVKFA-LNEKFYTVGEDVPVGTRLVDFIR 41 (206)
Q Consensus 7 p~~~~~~~i~f~-vNG~~~~v~~~~~p~~tLLd~LR 41 (206)
|.....|.|.++ .+|+.+.+ ++++.+|+.++-.
T Consensus 12 ~~~~~~m~i~Vk~~~g~~~~l--~v~~~~TV~~LK~ 45 (91)
T 3v6c_B 12 LVPRGSMQIFVNTLTGTHITL--EVEPSDTIENVKA 45 (91)
T ss_dssp CCCCCSEEEEEECTTSCEEEE--EECTTCBHHHHHH
T ss_pred CCCCCeEEEEEEeCCCCEEEE--EECCCCCHHHHHH
Confidence 334445777777 68999999 8999999998654
No 60
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=51.20 E-value=14 Score=24.84 Aligned_cols=32 Identities=13% Similarity=0.095 Sum_probs=24.7
Q ss_pred CCCCCceEEEE-ECCEEEEEeecCCCCCcHHHHHH
Q psy7831 8 LPKAGKEVKFA-LNEKFYTVGEDVPVGTRLVDFIR 41 (206)
Q Consensus 8 ~~~~~~~i~f~-vNG~~~~v~~~~~p~~tLLd~LR 41 (206)
..+.+|.|.+. .+|+.+.+ ++++.+|+.++-.
T Consensus 8 ~~~~~m~i~vk~~~g~~~~~--~v~~~~tV~~lK~ 40 (88)
T 3dbh_I 8 GSGGSMLIKVKTLTGKEIEI--DIEPTDKVERIKE 40 (88)
T ss_dssp SCCCCEEEEEECTTSCEEEE--EECTTCBHHHHHH
T ss_pred CCCCcEEEEEEcCCCCEEEE--EECCCCCHHHHHH
Confidence 34445778777 48999999 8999999998643
No 61
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=50.21 E-value=13 Score=26.73 Aligned_cols=44 Identities=23% Similarity=0.306 Sum_probs=31.8
Q ss_pred eEE-EEECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEc
Q psy7831 14 EVK-FALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVK 66 (206)
Q Consensus 14 ~i~-f~vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVd 66 (206)
.++ +.-|++...| ++.||+||-|.|...+.+.+. .+-.|.|-..
T Consensus 9 ~irvhLPn~QrT~V--~VrpG~tlrdaL~KaLk~R~L-------~pe~C~Vy~~ 53 (86)
T 1wxm_A 9 TVKVYLPNKQRTVV--TVRDGMSVYDSLDKALKVRGL-------NQDCCVVYRL 53 (86)
T ss_dssp EEEEECSSSCEEEE--ECCSSCBSHHHHHHHHHTTTC-------CSSSEEEEEE
T ss_pred eEEEECCCCCeEEE--EecCCcCHHHHHHHHHHHcCC-------CHHHeEEEEc
Confidence 444 4459998889 899999999999765544333 2567888864
No 62
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=46.74 E-value=16 Score=25.64 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=23.4
Q ss_pred CCceEEEE-ECCEEEEEeecCCCCCcHHHHHH
Q psy7831 11 AGKEVKFA-LNEKFYTVGEDVPVGTRLVDFIR 41 (206)
Q Consensus 11 ~~~~i~f~-vNG~~~~v~~~~~p~~tLLd~LR 41 (206)
..|.|.++ .+|+.+.+ ++++.+|+.++-.
T Consensus 21 ~~m~I~Vk~~~g~~~~l--~v~~~~TV~~LK~ 50 (98)
T 4hcn_B 21 RPMQIFVKTLTGKTITL--EVESSDTIDNVKS 50 (98)
T ss_dssp -CCEEEEEETTCCEEEE--ECCTTCBHHHHHH
T ss_pred CeEEEEEEeCCCCEEEE--EECCCCcHHHHHH
Confidence 35788887 59999999 8999999998654
No 63
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=42.44 E-value=22 Score=21.35 Aligned_cols=17 Identities=35% Similarity=0.825 Sum_probs=14.9
Q ss_pred HHHHHHHcCCCccccCC
Q psy7831 111 VQSRLALMNGTQCGYCS 127 (206)
Q Consensus 111 vq~a~~~~~~~QCG~Ct 127 (206)
..|+++...-..||||.
T Consensus 5 ceqamascehtmcgycq 21 (40)
T 1erd_A 5 CEQAMASCEHTMCGYCQ 21 (40)
T ss_dssp HHHHHHHTCGGGGGGSC
T ss_pred HHHHHHhcccccccccc
Confidence 46789988899999999
No 64
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=42.10 E-value=19 Score=25.34 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=24.3
Q ss_pred CCCCceEEEEECCEEE-EEeecCCCCCcHHHHHH
Q psy7831 9 PKAGKEVKFALNEKFY-TVGEDVPVGTRLVDFIR 41 (206)
Q Consensus 9 ~~~~~~i~f~vNG~~~-~v~~~~~p~~tLLd~LR 41 (206)
.+..+.|.++.+|+.+ .+ ++++..|+.++-.
T Consensus 4 ~~~~m~i~Vk~~g~~~~~l--~v~~~~TV~~lK~ 35 (96)
T 1wgg_A 4 GSSGYSVTVKWGKEKFEGV--ELNTDEPPMVFKA 35 (96)
T ss_dssp CCCEEEEEEEETTEEEEEE--EEESSSCHHHHHH
T ss_pred CCcEEEEEEEECCEEEEEE--EECCCCcHHHHHH
Confidence 3445677788899999 69 8999999988654
No 65
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=41.12 E-value=37 Score=23.31 Aligned_cols=33 Identities=12% Similarity=0.182 Sum_probs=25.5
Q ss_pred CCCCceEEEEECCEEEEEeecCCCCCcHHHHHHh
Q psy7831 9 PKAGKEVKFALNEKFYTVGEDVPVGTRLVDFIRD 42 (206)
Q Consensus 9 ~~~~~~i~f~vNG~~~~v~~~~~p~~tLLd~LR~ 42 (206)
.+..|.|.+..+|+.+.+. +++++.|+.++-..
T Consensus 4 ~~~~m~i~Vk~~g~~~~i~-~v~~~~TV~~lK~~ 36 (90)
T 1v5t_A 4 GSSGLPIIVKWGGQEYSVT-TLSEDDTVLDLKQF 36 (90)
T ss_dssp CCCSCCEEEEETTEEEEEC-SCCSSSBHHHHHHH
T ss_pred CCceEEEEEEECCEEEEEE-EeCCCCCHHHHHHH
Confidence 3445788888899999884 68999999886543
No 66
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=39.99 E-value=33 Score=24.34 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=21.9
Q ss_pred CceEEEEE-CCEEEEEeecCCCCCcHHHHHHh
Q psy7831 12 GKEVKFAL-NEKFYTVGEDVPVGTRLVDFIRD 42 (206)
Q Consensus 12 ~~~i~f~v-NG~~~~v~~~~~p~~tLLd~LR~ 42 (206)
.|.|.++. +|+.+.+ ++++..|+.++-..
T Consensus 23 ~m~I~Vk~~~g~~~~l--~v~~~~TV~~LK~~ 52 (106)
T 1ttn_A 23 ECQLRLRLSTGKDLKL--VVRSTDTVFHMKRR 52 (106)
T ss_dssp SEEEEEEETTTEEEEE--EECTTSHHHHHHHH
T ss_pred eEEEEEEcCCCCEEEE--EeCCCCcHHHHHHH
Confidence 45666654 8999999 89999998876543
No 67
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=39.34 E-value=29 Score=22.57 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=27.3
Q ss_pred ceEEEEE-CCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccc
Q psy7831 13 KEVKFAL-NEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSR 68 (206)
Q Consensus 13 ~~i~f~v-NG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~ 68 (206)
|.+.+++ ||+.+++ +.+.|+++++... +. +... .+-.+.|||+
T Consensus 1 m~i~i~~p~g~~~~~----~~g~T~~dla~~i-~~-~l~~-------~~vaa~vNg~ 44 (73)
T 2kmm_A 1 MEVMVFTPKGEIKRL----PQGATALDFAYSL-HS-DLGD-------HCIGAKVNHK 44 (73)
T ss_dssp CCEEEECTTCCEEEE----CTTCBHHHHHHHH-CS-HHHH-------TEEEEEETTE
T ss_pred CeEEEEcCCCCEEEc----CCCCcHHHHHHHH-hh-cccc-------ceEEEEECCE
Confidence 4577777 8987554 5689999998762 21 1100 1345678997
No 68
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=36.04 E-value=30 Score=22.38 Aligned_cols=28 Identities=11% Similarity=0.269 Sum_probs=21.8
Q ss_pred CceEEEEECCEEEEEeecCCCCCcHHHHHH
Q psy7831 12 GKEVKFALNEKFYTVGEDVPVGTRLVDFIR 41 (206)
Q Consensus 12 ~~~i~f~vNG~~~~v~~~~~p~~tLLd~LR 41 (206)
+|.|.++-+|+.+.+ ++++..|+.++-.
T Consensus 4 ~m~i~vk~~g~~~~~--~v~~~~tV~~LK~ 31 (77)
T 2bwf_A 4 SLNIHIKSGQDKWEV--NVAPESTVLQFKE 31 (77)
T ss_dssp EEEEEEEETTEEEEE--EECTTCBHHHHHH
T ss_pred EEEEEEEECCEEEEE--EECCCCcHHHHHH
Confidence 355666668999999 8999999988643
No 69
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=33.41 E-value=27 Score=25.52 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=22.2
Q ss_pred CceEEE-EECCEEEEEeecCCCCCcHHHH
Q psy7831 12 GKEVKF-ALNEKFYTVGEDVPVGTRLVDF 39 (206)
Q Consensus 12 ~~~i~f-~vNG~~~~v~~~~~p~~tLLd~ 39 (206)
.|.|.+ +++|+.+++ ++++..|+.++
T Consensus 7 ~M~I~Vk~l~g~~~~v--~V~~~~TV~dL 33 (105)
T 1v2y_A 7 GMTVRVCKMDGEVMPV--VVVQNATVLDL 33 (105)
T ss_dssp SEEEEEECSSSCEEEE--EECTTCBHHHH
T ss_pred cEEEEEEecCCCEEEE--EECCCChHHHH
Confidence 477877 579999999 89999999885
No 70
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.85 E-value=35 Score=22.24 Aligned_cols=30 Identities=13% Similarity=0.282 Sum_probs=22.6
Q ss_pred CCCceEEEE-ECCEEEEEeecCCCCCcHHHHHH
Q psy7831 10 KAGKEVKFA-LNEKFYTVGEDVPVGTRLVDFIR 41 (206)
Q Consensus 10 ~~~~~i~f~-vNG~~~~v~~~~~p~~tLLd~LR 41 (206)
+..|.|.++ .+|+.+.+ ++++..|+.++-.
T Consensus 5 ~~~m~i~vk~~~g~~~~~--~v~~~~tV~~LK~ 35 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSL--QVPEDELVSTLKQ 35 (81)
T ss_dssp SSSEEEEEEETTSCEEEE--EECSSCBHHHHHH
T ss_pred CCcEEEEEEeCCCCEEEE--EECCCCcHHHHHH
Confidence 345677776 47988888 8999999988654
No 71
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=32.33 E-value=35 Score=23.23 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=21.5
Q ss_pred ceEEEE-ECCEEEEEeecCCCCCcHHHHHH
Q psy7831 13 KEVKFA-LNEKFYTVGEDVPVGTRLVDFIR 41 (206)
Q Consensus 13 ~~i~f~-vNG~~~~v~~~~~p~~tLLd~LR 41 (206)
|.|.+. ++|+.+.+ ++++.+|+.++-.
T Consensus 1 M~I~Vk~~~g~~~~l--~v~~~~TV~~LK~ 28 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEI--DIEPTDKVERIKE 28 (88)
T ss_dssp CEEEEEETTCCEEEE--ECCTTCBHHHHHH
T ss_pred CEEEEEcCCCCEEEE--EECCCCCHHHHHH
Confidence 456666 58999999 8999999998643
No 72
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=30.46 E-value=16 Score=27.24 Aligned_cols=76 Identities=20% Similarity=0.203 Sum_probs=43.6
Q ss_pred eEEEE-ECCEEEEEeecCCCCCcHHHHHHhhcCCCCCcccCCCCCccceEEEEccccC-CCcccccccccchhhhhhhcC
Q psy7831 14 EVKFA-LNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHP-VTKELLVYSVNACLVYVQMCN 91 (206)
Q Consensus 14 ~i~f~-vNG~~~~v~~~~~p~~tLLd~LR~~~~l~g~K~gC~eG~CGACtVlVdG~~~-~~~~~~~~~v~sCl~~~~~~~ 91 (206)
.|... -|.+...| ++.||+||-|.|...+.+.+. .+-.|.|-.....+ +++....|...+. .+.
T Consensus 20 ~ir~hLPNqQrT~V--~VrpG~tlrdaL~KaLk~R~L-------~pe~C~Vy~~~~~~~~~~~~i~WdtDi~-----~L~ 85 (107)
T 1rrb_A 20 TIRVFLPNKQRTVV--NVRNGMSLHDCLMKALKVRGL-------QPECCAVFRLLQEHKGKKARLDWNTDAA-----SLI 85 (107)
T ss_dssp EEEEECTTTCCEEE--ECCTTCBHHHHHHHHHHHHTC-------CTTTEEEEECCCSCSSSCEECCTTCBHH-----HHT
T ss_pred eEEEECCCCCeEEE--EecCCcCHHHHHHHHHHHcCC-------CHHHceeEEccccCCCcccccchhhhhh-----hcc
Confidence 34444 49988889 899999999998764433222 25578888653221 2222333444333 456
Q ss_pred CCeEEEEcCCCCC
Q psy7831 92 GWSIYTIDGLGDK 104 (206)
Q Consensus 92 g~~I~TvEgL~~~ 104 (206)
|.++ .||=|...
T Consensus 86 geEL-~Ve~ld~~ 97 (107)
T 1rrb_A 86 GEEL-QVDFLKLA 97 (107)
T ss_dssp TSEE-EEEEC---
T ss_pred CcEE-EEEEcccC
Confidence 6664 57766543
No 73
>3i9v_1 NADH-quinone oxidoreductase subunit 1; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_1* 2fug_1* 3iam_1* 3ias_1* 3m9s_1*
Probab=30.26 E-value=32 Score=31.46 Aligned_cols=72 Identities=14% Similarity=0.226 Sum_probs=43.2
Q ss_pred HHHHHHcCCCccccCCCCccccccccccCCCCchHHHHHHHHHHhCCCCCCHHHHH------HHhc-CCccc--CCCCHH
Q psy7831 112 QSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVE------RALG-GNICR--CTGYRP 182 (206)
Q Consensus 112 q~a~~~~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~~~ll~~~~~~~~~~ei~------~al~-gnlCR--Ctgy~~ 182 (206)
.+.+.+..+.||+.|. -..|++++.+..-+.+. .-+.++|+ +.+. .-+|- |+.-.|
T Consensus 345 ~~f~~~ESCgqCtpCr-------------~Gt~~~l~~lL~ri~~G--~g~~~dld~L~~l~~~i~~~s~C~lg~~A~~P 409 (438)
T 3i9v_1 345 TRFYAHESCGKCTPCR-------------EGVAGFMVNLFAKIGTG--QGEEKDVENLEALLPLIEGRSFCPLADAAVWP 409 (438)
T ss_dssp HHHHHHHCCSCCHHHH-------------TTTTTHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTCCSSTHHHHHHHH
T ss_pred HHHhhhhhCCCCccch-------------hhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccCCCCcCcHhHHHH
Confidence 3455688899999998 22354555554444332 33455444 2333 33443 556779
Q ss_pred HHHHHHHHHHhhchhh
Q psy7831 183 ILDTFQSFATDACDRV 198 (206)
Q Consensus 183 i~~a~~~~a~~~~~~~ 198 (206)
++.+++.|-.+-..++
T Consensus 410 v~s~l~~Fr~E~eahi 425 (438)
T 3i9v_1 410 VKGSLRHFKDQYLALA 425 (438)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999887665554
No 74
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=30.23 E-value=65 Score=21.80 Aligned_cols=28 Identities=11% Similarity=0.112 Sum_probs=23.2
Q ss_pred CceEEEEECCEEEEEeecCCCCCcHHHHHH
Q psy7831 12 GKEVKFALNEKFYTVGEDVPVGTRLVDFIR 41 (206)
Q Consensus 12 ~~~i~f~vNG~~~~v~~~~~p~~tLLd~LR 41 (206)
...+..+++|+.+++ ++++..|+.++-.
T Consensus 12 ~~~~~~~~~g~~~~l--~v~~~~TV~~LK~ 39 (85)
T 2kd0_A 12 TIKLTVKFGGKSIPL--SVSPDCTVKDLKS 39 (85)
T ss_dssp CEEEEEEETTEEEEE--EECTTSBHHHHHH
T ss_pred cEEEEEEECCEEEEE--EECCCCcHHHHHH
Confidence 456778889999999 8999999988644
No 75
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=29.56 E-value=40 Score=25.82 Aligned_cols=28 Identities=14% Similarity=0.135 Sum_probs=23.2
Q ss_pred CceEEEE-ECCEEEEEeecCCCCCcHHHHHH
Q psy7831 12 GKEVKFA-LNEKFYTVGEDVPVGTRLVDFIR 41 (206)
Q Consensus 12 ~~~i~f~-vNG~~~~v~~~~~p~~tLLd~LR 41 (206)
.|.|.++ .||+.+.+ ++++.+|+.++-.
T Consensus 20 ~m~i~Vk~~~g~~~~l--~v~~~~tV~~lK~ 48 (172)
T 3u30_A 20 HMQIFVKTLTGKTITL--EVEPSDTIENVKA 48 (172)
T ss_dssp CEEEEEEETTTEEEEE--EECTTCBHHHHHH
T ss_pred cEEEEEEeCCCCEEEE--EECCCCcHHHHHH
Confidence 4777776 79999999 8999999998643
No 76
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=28.83 E-value=43 Score=23.61 Aligned_cols=35 Identities=11% Similarity=-0.037 Sum_probs=23.6
Q ss_pred cCCCCCCCceEEEEECCEEEEEeecCCCCCcHHHHHH
Q psy7831 5 EDPLPKAGKEVKFALNEKFYTVGEDVPVGTRLVDFIR 41 (206)
Q Consensus 5 ~~p~~~~~~~i~f~vNG~~~~v~~~~~p~~tLLd~LR 41 (206)
|.+..+..|.|.++..|+.+.+ ++++..|+.++-.
T Consensus 18 ~~~~~~~~m~I~Vk~~g~~~~l--~v~~~~TV~~LK~ 52 (101)
T 2klc_A 18 YFQGHPKIMKVTVKTPKEKEEF--AVPENSSVQQFKE 52 (101)
T ss_dssp -----CCCEEEEEECSSCEEEE--EECSCCCHHHHHH
T ss_pred ccCCCCCeEEEEEEeCCcEEEE--EECCCCCHHHHHH
Confidence 3444445677877777888899 8999999988643
No 77
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=28.54 E-value=76 Score=21.00 Aligned_cols=28 Identities=11% Similarity=0.153 Sum_probs=22.4
Q ss_pred CceEEEEE-CCEEEEEeecCCCCCcHHHHHH
Q psy7831 12 GKEVKFAL-NEKFYTVGEDVPVGTRLVDFIR 41 (206)
Q Consensus 12 ~~~i~f~v-NG~~~~v~~~~~p~~tLLd~LR 41 (206)
.|.|.+.. +|+.+++ ++++..|+.++-.
T Consensus 7 ~m~i~Vk~~~g~~~~~--~v~~~~tV~~lK~ 35 (87)
T 1wh3_A 7 GIQVFVKNPDGGSYAY--AINPNSFILGLKQ 35 (87)
T ss_dssp SEEEEEEETTTEEEEE--EECSSSBHHHHHH
T ss_pred CEEEEEEcCCCCEEEE--EeCCCChHHHHHH
Confidence 47777765 7999999 8999999988644
No 78
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=28.00 E-value=44 Score=21.84 Aligned_cols=28 Identities=7% Similarity=0.036 Sum_probs=22.2
Q ss_pred CceEEEEE-CCEEEEEeecCCCCCcHHHHHH
Q psy7831 12 GKEVKFAL-NEKFYTVGEDVPVGTRLVDFIR 41 (206)
Q Consensus 12 ~~~i~f~v-NG~~~~v~~~~~p~~tLLd~LR 41 (206)
+|.|.+.. +|+.+.+ ++++..|+.++-.
T Consensus 4 ~m~i~Vk~~~g~~~~~--~v~~~~tV~~lK~ 32 (79)
T 3phx_B 4 PLSILVRNNKGRSSTY--EVRLTQTVAHLKQ 32 (79)
T ss_dssp CEEEEEECTTSCEEEE--EECTTSBHHHHHH
T ss_pred CEEEEEEeCCCCEEEE--EECCcChHHHHHH
Confidence 46676664 8999999 8999999998643
No 79
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=26.98 E-value=33 Score=24.70 Aligned_cols=27 Identities=15% Similarity=0.070 Sum_probs=20.9
Q ss_pred CceEEEEE---CCEEEEEeecCCCCCcHHHHH
Q psy7831 12 GKEVKFAL---NEKFYTVGEDVPVGTRLVDFI 40 (206)
Q Consensus 12 ~~~i~f~v---NG~~~~v~~~~~p~~tLLd~L 40 (206)
+.++.++| +|+.+.+ +++|..|+.++-
T Consensus 19 ~~mIqI~Vk~~~Gkk~~v--~v~p~DTI~~LK 48 (93)
T 3plu_A 19 SHMIEVVVNDRLGKKVRV--KCLGEDSVGDFK 48 (93)
T ss_dssp -CEEEEEEECTTSCEEEE--EEETTSBHHHHH
T ss_pred CceEEEEEECCCCCEEEE--EECCcCHHHHHH
Confidence 45666666 4899999 899999999864
No 80
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=25.87 E-value=77 Score=20.03 Aligned_cols=27 Identities=11% Similarity=0.092 Sum_probs=20.8
Q ss_pred ceEEEEE-CCEEEEEeecCCCCCcHHHHHH
Q psy7831 13 KEVKFAL-NEKFYTVGEDVPVGTRLVDFIR 41 (206)
Q Consensus 13 ~~i~f~v-NG~~~~v~~~~~p~~tLLd~LR 41 (206)
|.|.+.. +|+.+.+ ++++.+|+.+.-.
T Consensus 1 M~i~vk~~~g~~~~i--~v~~~~tv~~lK~ 28 (76)
T 3a9j_A 1 MQIFVKTLTGKTITL--EVEPSDTIENVKA 28 (76)
T ss_dssp CEEEEEETTSCEEEE--ECCTTCBHHHHHH
T ss_pred CEEEEEcCCCCEEEE--EECCCCcHHHHHH
Confidence 4566654 7888899 8999999988654
No 81
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=25.80 E-value=53 Score=22.30 Aligned_cols=27 Identities=15% Similarity=0.157 Sum_probs=21.8
Q ss_pred ceEEEE-ECCEEEEEeecCCCCCcHHHHHH
Q psy7831 13 KEVKFA-LNEKFYTVGEDVPVGTRLVDFIR 41 (206)
Q Consensus 13 ~~i~f~-vNG~~~~v~~~~~p~~tLLd~LR 41 (206)
|.|.+. ++|+.+.+ ++++.+|+.++-.
T Consensus 2 m~i~vk~~~g~~~~~--~v~~~~TV~~LK~ 29 (96)
T 3k9o_B 2 MQIFVKTLTGKTITL--EVEPSDTIENVKA 29 (96)
T ss_dssp CEEEEEETTCCEEEE--ECCTTCBHHHHHH
T ss_pred cEEEEEeCCCCEEEE--EECCCCCHHHHHH
Confidence 567676 48999999 8999999998654
No 82
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=25.70 E-value=44 Score=23.86 Aligned_cols=29 Identities=10% Similarity=0.078 Sum_probs=22.0
Q ss_pred CCceEEEEE-CCEEEEEeecCCCCCcHHHHHH
Q psy7831 11 AGKEVKFAL-NEKFYTVGEDVPVGTRLVDFIR 41 (206)
Q Consensus 11 ~~~~i~f~v-NG~~~~v~~~~~p~~tLLd~LR 41 (206)
..|.|.++. +|+.+.+ ++++..|+.++-.
T Consensus 34 ~~m~I~Vk~~~g~~~~l--~v~~~~TV~~LK~ 63 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITL--EVEPSDTIENVKA 63 (111)
T ss_dssp SCEEEEEECSSSCEEEE--EECTTCBHHHHHH
T ss_pred CeEEEEEEcCCCCEEEE--EeCCCCCHHHHHH
Confidence 356666664 7888888 8999999988643
No 83
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=24.65 E-value=37 Score=24.38 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=22.2
Q ss_pred CceEEEE-ECCEEEEEeecCCCCCcHHHHHH
Q psy7831 12 GKEVKFA-LNEKFYTVGEDVPVGTRLVDFIR 41 (206)
Q Consensus 12 ~~~i~f~-vNG~~~~v~~~~~p~~tLLd~LR 41 (206)
.|.|.+. ++|+.+.+ ++++.+|+.++-.
T Consensus 35 ~m~I~Vk~~~G~~~~l--~v~~~~TV~~LK~ 63 (111)
T 3vdz_A 35 AMQIFVKTLTGKTITL--EVEPSDTIENVKA 63 (111)
T ss_dssp CEEEEEECSSSCEEEE--EECTTCBHHHHHH
T ss_pred cEEEEEEeCCCCEEEE--EeCCCCCHHHHHH
Confidence 4667666 58999999 8999999998643
No 84
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=23.67 E-value=74 Score=20.12 Aligned_cols=27 Identities=11% Similarity=0.098 Sum_probs=20.6
Q ss_pred ceEEEEE-CCEEEEEeecCCCCCcHHHHHH
Q psy7831 13 KEVKFAL-NEKFYTVGEDVPVGTRLVDFIR 41 (206)
Q Consensus 13 ~~i~f~v-NG~~~~v~~~~~p~~tLLd~LR 41 (206)
|.|.+.. +|+.+.+ ++++..|+.+.-.
T Consensus 1 M~i~vk~~~g~~~~~--~v~~~~tv~~lK~ 28 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEI--DIEPTDKVERIKE 28 (76)
T ss_dssp CEEEEECTTSCEEEE--ECCTTCBHHHHHH
T ss_pred CEEEEECCCCCEEEE--EECCCChHHHHHH
Confidence 4566654 7888889 8999999988654
No 85
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=22.81 E-value=52 Score=21.57 Aligned_cols=28 Identities=7% Similarity=0.064 Sum_probs=21.8
Q ss_pred CceEEEE-ECCEEEEEeecCCCCCcHHHHHH
Q psy7831 12 GKEVKFA-LNEKFYTVGEDVPVGTRLVDFIR 41 (206)
Q Consensus 12 ~~~i~f~-vNG~~~~v~~~~~p~~tLLd~LR 41 (206)
+|.|.+. .+|+.+.+ ++++.+|+.++-.
T Consensus 3 ~m~i~vk~~~g~~~~~--~v~~~~tV~~lK~ 31 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIIL--EVEPSDTIENVKA 31 (85)
T ss_dssp -CEEEEECGGGCEEEE--ECCTTCBHHHHHH
T ss_pred eEEEEEEeCCCCEEEE--EECCCCcHHHHHH
Confidence 3667776 58888999 8999999998654
No 86
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=22.29 E-value=61 Score=24.21 Aligned_cols=28 Identities=11% Similarity=0.238 Sum_probs=22.4
Q ss_pred CceEEEE-ECCEEEEEeecCCCCCcHHHHHH
Q psy7831 12 GKEVKFA-LNEKFYTVGEDVPVGTRLVDFIR 41 (206)
Q Consensus 12 ~~~i~f~-vNG~~~~v~~~~~p~~tLLd~LR 41 (206)
+|.|.+. ++|+.+.+ ++++..|+.++-.
T Consensus 2 ~m~i~vk~~~g~~~~l--~v~~~~tV~~lK~ 30 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQV--SLSSSMSVSELKA 30 (159)
T ss_dssp -CEEEEEETTSCEEEE--ECCTTCCHHHHHH
T ss_pred ceEEEEEECCCCEEEE--EeCCCCcHHHHHH
Confidence 3667776 68999999 8999999998643
No 87
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=21.50 E-value=83 Score=20.62 Aligned_cols=29 Identities=0% Similarity=0.092 Sum_probs=22.0
Q ss_pred CCceEEEEE-CCEEEEEeecCCCCCcHHHHHH
Q psy7831 11 AGKEVKFAL-NEKFYTVGEDVPVGTRLVDFIR 41 (206)
Q Consensus 11 ~~~~i~f~v-NG~~~~v~~~~~p~~tLLd~LR 41 (206)
+.|.|.+.. +|+.+++ ++++..|+.++-.
T Consensus 4 ~~m~i~vk~~~g~~~~~--~v~~~~TV~~lK~ 33 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKI--RMEPDETVKVLKE 33 (85)
T ss_dssp CCEEEEEEETTSCEEEE--EECTTSBHHHHHH
T ss_pred ceEEEEEEECCCCEEEE--EECCCCCHHHHHH
Confidence 346676665 6998999 8999999988543
No 88
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=21.27 E-value=98 Score=21.19 Aligned_cols=27 Identities=11% Similarity=0.092 Sum_probs=21.1
Q ss_pred ceEEEEE-CCEEEEEeecCCCCCcHHHHHH
Q psy7831 13 KEVKFAL-NEKFYTVGEDVPVGTRLVDFIR 41 (206)
Q Consensus 13 ~~i~f~v-NG~~~~v~~~~~p~~tLLd~LR 41 (206)
|.|.+.. +|+.+.+ ++++..|+.++-.
T Consensus 1 M~I~Vk~~~g~~~~~--~v~~~~TV~~LK~ 28 (98)
T 1yx5_B 1 MQIFVKTLTGKTITL--EVEPSDTIENVKA 28 (98)
T ss_dssp CEEEEEETTSCEEEE--ECCTTCBHHHHHH
T ss_pred CEEEEEeCCCCEEEE--EECCCCcHHHHHH
Confidence 4566665 8888899 8999999988654
No 89
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=21.22 E-value=1e+02 Score=23.97 Aligned_cols=33 Identities=6% Similarity=0.027 Sum_probs=24.7
Q ss_pred CceEEEEECCEEEEEeecCCCCC---cHHHHHHhhcCCC
Q psy7831 12 GKEVKFALNEKFYTVGEDVPVGT---RLVDFIRDVAGLK 47 (206)
Q Consensus 12 ~~~i~f~vNG~~~~v~~~~~p~~---tLLd~LR~~~~l~ 47 (206)
.|.|+++++|+.+++ ....+. +--++++ .+.++
T Consensus 29 ~~~I~i~~~~~~~~a--~L~D~~aP~Ta~~f~~-~LPl~ 64 (153)
T 2nnz_A 29 EMRLRIRFESAECEV--ELYEEWAPETVRAIAD-ALPIK 64 (153)
T ss_dssp CCCEEEEETTEEEEE--CCCTTSCHHHHHHHHH-TCSEE
T ss_pred CeEEEEEECCEEEEE--EEcCCCCHHHHHHHHH-hCCcE
Confidence 588999999999888 677776 6666665 35553
No 90
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=20.82 E-value=75 Score=22.50 Aligned_cols=27 Identities=7% Similarity=0.217 Sum_probs=21.0
Q ss_pred ceEEEE-ECCEEEEEeecCCCCCcHHHHHH
Q psy7831 13 KEVKFA-LNEKFYTVGEDVPVGTRLVDFIR 41 (206)
Q Consensus 13 ~~i~f~-vNG~~~~v~~~~~p~~tLLd~LR 41 (206)
|.|.++ ++|+.+.+ ++++..|+.++-.
T Consensus 2 m~I~Vk~~~g~~~~l--~v~~~~TV~~LK~ 29 (106)
T 3m62_B 2 VSLTFKNFKKEKVPL--DLEPSNTILETKT 29 (106)
T ss_dssp -CEEEECTTCCEEEE--CCCTTSBHHHHHH
T ss_pred EEEEEEeCCCCEEEE--EECCCCcHHHHHH
Confidence 456666 48999999 8999999998644
No 91
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=20.77 E-value=83 Score=22.30 Aligned_cols=19 Identities=16% Similarity=0.382 Sum_probs=15.4
Q ss_pred ceEEEEECCEEEEEeecCCCC
Q psy7831 13 KEVKFALNEKFYTVGEDVPVG 33 (206)
Q Consensus 13 ~~i~f~vNG~~~~v~~~~~p~ 33 (206)
..|.++|+|+.|.+ ..+++
T Consensus 5 ~~v~V~I~G~~Y~l--~~~~~ 23 (104)
T 1t3u_A 5 NTLTVQILDKEYCI--NCPDD 23 (104)
T ss_dssp -CEEEEETTEEEEE--CCCTT
T ss_pred CeEEEEECCEEEEe--eCCCC
Confidence 46999999999999 66654
No 92
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=20.73 E-value=39 Score=23.92 Aligned_cols=11 Identities=36% Similarity=0.945 Sum_probs=9.8
Q ss_pred ccCCCCCccce
Q psy7831 51 YMCREGGCGVC 61 (206)
Q Consensus 51 ~gC~eG~CGAC 61 (206)
.+|..|.|++|
T Consensus 54 ~~C~sgsC~sC 64 (87)
T 2k02_A 54 EGCLSGSCKSC 64 (87)
T ss_dssp CSSCSSSSSSC
T ss_pred CCCCCCCCCCC
Confidence 58988999999
No 93
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=20.69 E-value=43 Score=21.72 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=23.6
Q ss_pred cCCCccccCCCCccccccccccCCCCchHHHHH
Q psy7831 118 MNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAM 150 (206)
Q Consensus 118 ~~~~QCG~Ct~~~~~~~~~~~~~~~~PG~vm~~ 150 (206)
..+..||.|. .+||.....-..-.++.++..
T Consensus 37 ~~C~~Cg~C~--~~CP~~ai~~~~~~~~~~~~~ 67 (77)
T 1bc6_A 37 DVCIDCGACE--AVCPVSAIYHEDFVPEEWKSY 67 (77)
T ss_dssp TTCCSCCSHH--HHSGGGSSEETTTSCHHHHHH
T ss_pred ccCcCccCCH--hhcCccceEecCCCHHHHHHH
Confidence 4678899999 999988766666667666654
Done!