RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7831
(206 letters)
>gnl|CDD|215491 PLN02906, PLN02906, xanthine dehydrogenase.
Length = 1319
Score = 164 bits (418), Expect = 5e-47
Identities = 65/159 (40%), Positives = 93/159 (58%), Gaps = 17/159 (10%)
Query: 36 LVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMCNGWSI 95
L++++RD+ GL GTK C EGGCG CTVMV T + + Y+VNACL + G +
Sbjct: 4 LLEYLRDL-GLTGTKLGCGEGGCGACTVMVSHYDRKTGKCVHYAVNACLAPLYSVEGMHV 62
Query: 96 YTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLM 155
T++G+G+++ G H VQ LA M+G +QCG+C+PG +M+M++ L
Sbjct: 63 ITVEGIGNRRDGLHPVQEALASMHG----------------SQCGFCTPGFIMSMYALLR 106
Query: 156 EHDYKVGKADVERALGGNICRCTGYRPILDTFQSFATDA 194
+ +E L GN+CRCTGYRPILD F+ FA
Sbjct: 107 SSKTPPTEEQIEECLAGNLCRCTGYRPILDAFRVFAKTD 145
>gnl|CDD|234072 TIGR02963, xanthine_xdhA, xanthine dehydrogenase, small subunit.
Members of this protein family are the small subunit
(or, in eukaryotes, the N-terminal domain) of xanthine
dehydrogenase, an enzyme of purine catabolism via urate.
The small subunit contains both an FAD and a 2Fe-2S
cofactor. Aldehyde oxidase (retinal oxidase) appears to
have arisen as a neofunctionalization among xanthine
dehydrogenases in eukaryotes and [Purines, pyrimidines,
nucleosides, and nucleotides, Other].
Length = 467
Score = 144 bits (365), Expect = 5e-41
Identities = 67/180 (37%), Positives = 98/180 (54%), Gaps = 20/180 (11%)
Query: 15 VKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKE 74
++F LN + T+ DV L+D++R+ AGL GTK C EG CG CTV+V K
Sbjct: 1 IRFFLNGETVTL-SDVDPTRTLLDYLREDAGLTGTKEGCAEGDCGACTVVVGELVDGGK- 58
Query: 75 LLVYSVNACLVYVQMCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAM 134
L SVNAC+ ++ +G ++ T++ L H VQ + +G+QCG+C+PG VM++
Sbjct: 59 LRYRSVNACIQFLPSLDGKAVVTVEDLRQPDGRLHPVQQAMVECHGSQCGFCTPGFVMSL 118
Query: 135 HRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTGYRPILDTFQSFATDA 194
+ L ++ +AD+E AL GN+CRCTGYRPILD + A D
Sbjct: 119 YA-----------------LYKNSPAPSRADIEDALQGNLCRCTGYRPILDAAE-AAFDY 160
>gnl|CDD|215096 PLN00192, PLN00192, aldehyde oxidase.
Length = 1344
Score = 147 bits (372), Expect = 8e-41
Identities = 64/186 (34%), Positives = 100/186 (53%), Gaps = 20/186 (10%)
Query: 15 VKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKE 74
+ FA+N + + + V T L++F+R K K C EGGCG C V++ PV +
Sbjct: 6 LVFAVNGERFELS-SVDPSTTLLEFLRTQTPFKSVKLGCGEGGCGACVVLLSKYDPVLDQ 64
Query: 75 LLVYSVNACLVYVQMCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAM 134
+ ++V++CL + NG SI T +GLG+ K G+H + R A + +QCG+C+PGM +++
Sbjct: 65 VEDFTVSSCLTLLCSVNGCSITTSEGLGNSKDGFHPIHKRFAGFHASQCGFCTPGMCISL 124
Query: 135 -------HRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTGYRPILDTF 187
+T G K+ + E+A+ GN+CRCTGYRPI+D
Sbjct: 125 FSALVNADKTDRPEPPSGFS------------KLTVVEAEKAVSGNLCRCTGYRPIVDAC 172
Query: 188 QSFATD 193
+SFA D
Sbjct: 173 KSFAAD 178
>gnl|CDD|226977 COG4630, XdhA, Xanthine dehydrogenase, iron-sulfur cluster and
FAD-binding subunit A [Nucleotide transport and
metabolism].
Length = 493
Score = 135 bits (342), Expect = 1e-37
Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 21/173 (12%)
Query: 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTK 73
++F LN + + DVP T L+D++R L GTK C EG CG CTV+V V
Sbjct: 8 TIRFLLNGETRVL-SDVPPTTTLLDYLRLDRRLTGTKEGCAEGDCGACTVLVG--RLVDG 64
Query: 74 ELLVY-SVNACLVYVQMCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVM 132
L Y SVNAC+ ++ +G + T++ L + H VQ + +G+QCG+C+PG VM
Sbjct: 65 GSLRYESVNACIRFLGSLDGTHVVTVEHLRGQDGTLHPVQQAMVDFHGSQCGFCTPGFVM 124
Query: 133 AMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTGYRPILD 185
+++ L + +A +E+AL GN+CRCTGYRPI+
Sbjct: 125 SLYA-----------------LWMNSPTPSRAAIEKALQGNLCRCTGYRPIIR 160
>gnl|CDD|132014 TIGR02969, mam_aldehyde_ox, aldehyde oxidase. Members of this
family are mammalian aldehyde oxidase (EC 1.2.3.1)
isozymes, closely related to xanthine
dehydrogenase/oxidase.
Length = 1330
Score = 134 bits (339), Expect = 2e-36
Identities = 66/173 (38%), Positives = 96/173 (55%), Gaps = 19/173 (10%)
Query: 26 VGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLV 85
V ++V T L+ ++R L GTKY C GGCG CTVM+ +P TK + + VNACL
Sbjct: 13 VEKNVDPETMLLPYLRKKLRLTGTKYGCGGGGCGACTVMISRYNPSTKSIRHHPVNACLT 72
Query: 86 YVQMCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPG 145
+ G ++ T++G+G + H VQ R+A +GTQCG+C+PGMVM+M+ + P
Sbjct: 73 PICSLYGAAVTTVEGIGSTRTRLHPVQERIAKCHGTQCGFCTPGMVMSMYALLRNHPEPT 132
Query: 146 MVMAMHSFLMEHDYKVGKADVERALGGNICRCTGYRPILDTFQSF--ATDACD 196
+ + ALGGN+CRCTGYRPI+D ++F + C
Sbjct: 133 L-----------------DQLTDALGGNLCRCTGYRPIIDACKTFCKTSGCCQ 168
>gnl|CDD|224991 COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small
subunit CoxS/CutS homologs [Energy production and
conversion].
Length = 156
Score = 116 bits (293), Expect = 3e-33
Identities = 56/170 (32%), Positives = 77/170 (45%), Gaps = 29/170 (17%)
Query: 15 VKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKE 74
+ +N + + DV T L+D +RD GL GTK C G CG CTV+V
Sbjct: 4 ITLTVNGEPVEL--DVDPRTPLLDVLRDELGLTGTKKGCGHGQCGACTVLVDGE------ 55
Query: 75 LLVYSVNACLVYVQMCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAM 134
+VN+CL G I TI+GL K G H VQ +
Sbjct: 56 ----AVNSCLTLAVQAEGAEITTIEGLAKKDGGLHPVQQAF----------------LEH 95
Query: 135 HRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTGYRPIL 184
QCGYC+PG +M+ + L + ++ AL GN+CRCTGY+ I+
Sbjct: 96 DAFQCGYCTPGQIMSATALLDRNP-APTDEEIREALSGNLCRCTGYQNIV 144
>gnl|CDD|132237 TIGR03193, 4hydroxCoAred, 4-hydroxybenzoyl-CoA reductase, gamma
subunit. 4-hydroxybenzoyl-CoA reductase converts
4-hydroxybenzoyl-CoA to benzoyl-CoA, a common
intermediate in the degradation of aromatic compounds.
This protein family represents the gamma chain of this
three-subunit enzyme.
Length = 148
Score = 96.1 bits (239), Expect = 2e-25
Identities = 51/162 (31%), Positives = 73/162 (45%), Gaps = 28/162 (17%)
Query: 30 VPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQM 89
V LVD++RD GL GTK C G CG CTV+V R AC
Sbjct: 15 VADNMLLVDYLRDTVGLTGTKQGCDGGECGACTVLVDGR----------PRLACSTLAHR 64
Query: 90 CNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMA 149
G + T++GL ++Q GTQCG+C+PGM+MA
Sbjct: 65 VAGRKVETVEGLATNGR-LSRLQQAFHERLGTQCGFCTPGMIMAAEA------------- 110
Query: 150 MHSFLMEHDYKVGKADVERALGGNICRCTGYRPILDTFQSFA 191
L+ + + ++ AL GN+CRCTGY I+++ ++ A
Sbjct: 111 ----LLRRNPSPSRDEIRAALAGNLCRCTGYVKIIESVEAAA 148
>gnl|CDD|132354 TIGR03311, Se_dep_Molyb_1, selenium-dependent molybdenum
hydroxylase 1. Members of this protein family show full
length homology to the molybdenum-containing aldehyde
oxido-reductase of Desulfovibrio gigas. Members,
however, are found only within species that have, and
near those genes that encode, a set of predicted
accessory proteins for selenium-dependent molybdenum
hydroxylases. The best known examples of such enzymes
are forms of xanthine dehydrogenase and purine
hydroxylase; this family appears to be another such
enzyme.
Length = 848
Score = 95.3 bits (237), Expect = 7e-23
Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 33/174 (18%)
Query: 15 VKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKE 74
+F +N + V E+ +L++F+R+ L G K C EG CG CTV+V +
Sbjct: 1 YEFIVNGREVDVNEEK----KLLEFLREDLRLTGVKNGCGEGACGACTVIVNGK------ 50
Query: 75 LLVYSVNACLVYVQMCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAM 134
+V AC G I T++GL +++ + + G V
Sbjct: 51 ----AVRACRFTTAKLAGKEITTVEGLTEREKDVYAW------------AFAKAGAV--- 91
Query: 135 HRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTGYRPILDTFQ 188
QCG+C PGMV++ + L++ + +A++++AL GNICRCTGY I+ +
Sbjct: 92 ---QCGFCIPGMVISAKA-LLDKNPNPTEAEIKKALKGNICRCTGYVKIIKAVR 141
>gnl|CDD|132242 TIGR03198, pucE, xanthine dehydrogenase E subunit. This gene has
been characterized in B. subtilis as the Iron-sulfur
cluster binding-subunit of xanthine dehydrogenase
(pucE), acting in conjunction with pucC, the FAD-binding
subunit and pucD, the molybdopterin binding subunit. The
more common XDH complex (GenProp0640) includes the xdhA
gene as the Fe-S cluster binding component.
Length = 151
Score = 88.4 bits (219), Expect = 2e-22
Identities = 49/151 (32%), Positives = 68/151 (45%), Gaps = 29/151 (19%)
Query: 34 TRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMCNGW 93
TRL D +R L GTK C G CG C+V++ + NACL +G
Sbjct: 21 TRLSDLLRKELQLTGTKVSCGIGRCGACSVLIDGK----------LANACLTMAYQADGH 70
Query: 94 SIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSF 153
I TI+G+ ++ Q+ G QCGYC+ PGMV+A+ +
Sbjct: 71 EITTIEGI--AENELDPCQTAFLEEGGFQCGYCT----------------PGMVVALKAL 112
Query: 154 LMEHDYKVGKADVERALGGNICRCTGYRPIL 184
E + D+E L GN+CRCTGY I+
Sbjct: 113 FRETP-QPSDEDMEEGLSGNLCRCTGYGGII 142
>gnl|CDD|201981 pfam01799, Fer2_2, [2Fe-2S] binding domain.
Length = 75
Score = 79.8 bits (198), Expect = 5e-20
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 18/93 (19%)
Query: 97 TIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLME 156
T++GL + H VQ QCGYC+PGMVMA + L
Sbjct: 1 TVEGLAED-GKLHPVQQAFV----------------EHGAVQCGYCTPGMVMAATALLER 43
Query: 157 HDYKVGKADVERALGGNICRCTGYRPILDTFQS 189
+ + ++ AL GN+CRCTGYR I+D +
Sbjct: 44 NP-DPTEEEIREALSGNLCRCTGYRRIVDAVKR 75
>gnl|CDD|236910 PRK11433, PRK11433, aldehyde oxidoreductase 2Fe-2S subunit;
Provisional.
Length = 217
Score = 79.4 bits (196), Expect = 2e-18
Identities = 57/189 (30%), Positives = 81/189 (42%), Gaps = 23/189 (12%)
Query: 7 PLPKAGKEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVK 66
V +N K + +V T L+D +R+ L GTK C G CG CTV+V
Sbjct: 44 TPAPEISPVTLKVNGKTEQL--EVDTRTTLLDALREHLHLTGTKKGCDHGQCGACTVLVN 101
Query: 67 SRHPVTKELLVYSVNACLVYVQMCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYC 126
R +NACL M G I TI+GLG + H +Q+ +G QCGYC
Sbjct: 102 GRR----------LNACLTLAVMHQGAEITTIEGLGSPDN-LHPMQAAFVKHDGFQCGYC 150
Query: 127 SPGM----VMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTGYRP 182
+PG V + + G P V + ++ ++ + GNICRC Y
Sbjct: 151 TPGQICSSVAVLKEIKDGI--PSHVTVD----LTAAPELTADEIRERMSGNICRCGAYSN 204
Query: 183 ILDTFQSFA 191
IL+ + A
Sbjct: 205 ILEAIEDVA 213
>gnl|CDD|182139 PRK09908, PRK09908, xanthine dehydrogenase subunit XdhC;
Provisional.
Length = 159
Score = 71.5 bits (175), Expect = 7e-16
Identities = 47/155 (30%), Positives = 73/155 (47%), Gaps = 29/155 (18%)
Query: 33 GTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYVQMCNG 92
GT L + +R+ GL K C G CG CTV+V ++++CL G
Sbjct: 25 GTPLSELLRE-QGLLSVKQGCCVGECGACTVLVDG----------TAIDSCLYLAAWAEG 73
Query: 93 WSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHS 152
I T++G + ++ Q Y G V QCG+C+PG++MA +
Sbjct: 74 KEIRTLEGEA-----------KGGKLSHVQQAYAKSGAV------QCGFCTPGLIMATTA 116
Query: 153 FLMEHDYK-VGKADVERALGGNICRCTGYRPILDT 186
L + K + ++ R L GN+CRCTGY+ I++T
Sbjct: 117 MLAKPREKPLTITEIRRGLAGNLCRCTGYQMIVNT 151
>gnl|CDD|238126 cd00207, fer2, 2Fe-2S iron-sulfur cluster binding domain.
Iron-sulfur proteins play an important role in electron
transfer processes and in various enzymatic reactions.
The family includes plant and algal ferredoxins, which
act as electron carriers in photosynthesis and
ferredoxins, which participate in redox chains (from
bacteria to mammals). Fold is ismilar to thioredoxin.
Length = 84
Score = 40.1 bits (94), Expect = 6e-05
Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 12/82 (14%)
Query: 15 VKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMV--------K 66
V + V +VP G L+D R+ AG+ Y CR G CG C V V
Sbjct: 1 VTINVPGSGVEV--EVPEGETLLDAARE-AGI-DIPYSCRAGACGTCKVEVVEGEVDQSD 56
Query: 67 SRHPVTKELLVYSVNACLVYVQ 88
+E V AC V
Sbjct: 57 PSLLDEEEAEGGYVLACQTRVT 78
>gnl|CDD|215725 pfam00111, Fer2, 2Fe-2S iron-sulfur cluster binding domain.
Length = 77
Score = 37.1 bits (86), Expect = 6e-04
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Query: 29 DVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLV--------YSV 80
+VP G + + AG+ Y CR GGCG C V V + + + Y V
Sbjct: 11 EVPDGETTLLDAAEEAGI-DIPYSCRGGGCGTCAVKVLEGEVQSDQSFLEDDELAAGYVV 69
Query: 81 NACLVYVQ 88
AC Y +
Sbjct: 70 LACQTYPK 77
>gnl|CDD|215895 pfam00393, 6PGD, 6-phosphogluconate dehydrogenase, C-terminal
domain. This family represents the C-terminal
all-alpha domain of 6-phosphogluconate dehydrogenase.
The domain contains two structural repeats of 5 helices
each.
Length = 290
Score = 30.2 bits (69), Expect = 0.64
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 33 GTRLVDFIRDVAGLKGT 49
G LVD I D AG KGT
Sbjct: 68 GKPLVDKILDKAGQKGT 84
>gnl|CDD|129951 TIGR00873, gnd, 6-phosphogluconate dehydrogenase (decarboxylating).
This model does not specify whether the cofactor is
NADP only (EC 1.1.1.44), NAD only, or both. The model
does not assign an EC number for that reason [Energy
metabolism, Pentose phosphate pathway].
Length = 467
Score = 28.9 bits (65), Expect = 1.8
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 13/52 (25%)
Query: 33 GTRLVDFIRDVAGLKGTKYMCREGGCGVCTVM--VKSRHPVTKELLVYSVNA 82
G LVD I D AG KGT G T + + PVT L+ SV A
Sbjct: 242 GKPLVDKILDTAGQKGT---------GKWTAISALDLGVPVT--LITESVFA 282
>gnl|CDD|236453 PRK09287, PRK09287, 6-phosphogluconate dehydrogenase; Validated.
Length = 459
Score = 28.6 bits (65), Expect = 2.2
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 33 GTRLVDFIRDVAGLKGT 49
G LVD I D AG KGT
Sbjct: 235 GKPLVDVILDKAGQKGT 251
>gnl|CDD|221911 pfam13085, Fer2_3, 2Fe-2S iron-sulfur cluster binding domain.
The 2Fe-2S ferredoxin family have a general core
structure consisting of beta(2)-alpha-beta(2) which
abeta-grasp type fold. The domain is around one hundred
amino acids with four conserved cysteine residues to
which the 2Fe-2S cluster is ligated.
Length = 107
Score = 27.2 bits (61), Expect = 3.1
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 51 YMCREGGCGVCTVMV 65
CREG CG C + +
Sbjct: 49 ASCREGVCGSCAMRI 63
>gnl|CDD|182084 PRK09800, PRK09800, putative hypoxanthine oxidase; Provisional.
Length = 956
Score = 28.3 bits (63), Expect = 3.6
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 138 QCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTGYR 181
Q GY P + + L++ + +++ AL G R G++
Sbjct: 97 QSGYNDPAAALIITD-LLDRIAAPTREEIDDALSGLFSRDAGWQ 139
>gnl|CDD|181038 PRK07570, PRK07570, succinate dehydrogenase/fumarate reductase
iron-sulfur subunit; Validated.
Length = 250
Score = 27.5 bits (62), Expect = 4.2
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 53 CREGGCGVCTVMV 65
CREG CG+C +++
Sbjct: 58 CREGICGMCGLVI 70
>gnl|CDD|223439 COG0362, Gnd, 6-phosphogluconate dehydrogenase [Carbohydrate
transport and metabolism].
Length = 473
Score = 28.0 bits (63), Expect = 4.5
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 28 EDVPVGTRLVDFIRDVAGLKGT 49
+D G LVD I D AG KGT
Sbjct: 242 KDEEGGKPLVDKILDKAGQKGT 263
>gnl|CDD|239201 cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN
binding domain. OYE was the first flavin-dependent
enzyme identified, however its true physiological role
remains elusive to this day. Each monomer of OYE
contains FMN as a non-covalently bound cofactor, uses
NADPH as a reducing agent with oxygens, quinones, and
alpha,beta-unsaturated aldehydes and ketones, and can
act as electron acceptors in the catalytic reaction.
Members of OYE family include trimethylamine
dehydrogenase, 2,4-dienoyl-CoA reductase, enoate
reductase, pentaerythriol tetranitrate reductase,
xenobiotic reductase, and morphinone reductase.
Length = 327
Score = 27.5 bits (62), Expect = 4.9
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 26 VGEDVPVGTRL--VDFIRDVAGLKGTKYMCRE 55
VG D PVG RL DF+ L+ + +
Sbjct: 205 VGPDFPVGVRLSADDFVPGGLTLEEAIEIAKA 236
>gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 26.8 bits (60), Expect = 8.1
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 125 YCSPGMVMAMHRTQCGYCSP-GMVMAMHSFLMEH 157
PG V+ HR+ + G V A S H
Sbjct: 27 GLEPGRVVEEHRSGYVVATEEGEVRAEVSGKWRH 60
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.139 0.449
Gapped
Lambda K H
0.267 0.0794 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,206,950
Number of extensions: 895928
Number of successful extensions: 961
Number of sequences better than 10.0: 1
Number of HSP's gapped: 926
Number of HSP's successfully gapped: 30
Length of query: 206
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 114
Effective length of database: 6,857,034
Effective search space: 781701876
Effective search space used: 781701876
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.6 bits)