RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7831
(206 letters)
>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine
oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A
{Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A*
3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*
Length = 164
Score = 202 bits (516), Expect = 4e-67
Identities = 64/179 (35%), Positives = 100/179 (55%), Gaps = 18/179 (10%)
Query: 13 KEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVT 72
E+ F +N K ++ T L+ ++R GL+GTK C EGGCG CTVM+ +
Sbjct: 3 DELVFFVNGKKVVE-KNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDRLQ 61
Query: 73 KELLVYSVNACLVYVQMCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVM 132
+++ +S NACL + + ++ T++G+G K H VQ R+A +G+QCG+C+
Sbjct: 62 DKIIHFSANACLAPICTLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCT----- 116
Query: 133 AMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTGYRPILDTFQSFA 191
PG+VM+M++ L + ++E A GN+CRCTGYRPIL F++FA
Sbjct: 117 -----------PGIVMSMYTLLRNQP-EPTVEEIEDAFQGNLCRCTGYRPILQGFRTFA 163
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL;
1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A*
1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A*
2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B*
3b9j_A* 1fiq_A*
Length = 1332
Score = 215 bits (549), Expect = 5e-65
Identities = 64/183 (34%), Positives = 102/183 (55%), Gaps = 18/183 (9%)
Query: 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTK 73
E+ F +N K ++ T L+ ++R GL+GTK C EGGCG CTVM+ +
Sbjct: 5 ELVFFVNGKKVVE-KNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDRLQD 63
Query: 74 ELLVYSVNACLVYVQMCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMA 133
+++ +S NACL + + ++ T++G+G K H VQ R+A +G+QCG+C+PG+VM+
Sbjct: 64 KIIHFSANACLAPICTLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIVMS 123
Query: 134 MHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTGYRPILDTFQSFATD 193
M+ L+ + + ++E A GN+CRCTGYRPIL F++FA +
Sbjct: 124 MYT-----------------LLRNQPEPTVEEIEDAFQGNLCRCTGYRPILQGFRTFAKN 166
Query: 194 ACD 196
Sbjct: 167 GGC 169
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur,
oxidoreductase, purine metabolism, molybdenum cofactor,
hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter
capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Length = 462
Score = 180 bits (458), Expect = 5e-55
Identities = 56/184 (30%), Positives = 86/184 (46%), Gaps = 29/184 (15%)
Query: 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTK 73
E+ F LN + V L++++R GL GTK C EG CG CTVM++
Sbjct: 2 EIAFLLNGETRRV-RIEDPTQSLLEWLRA-EGLTGTKEGCNEGDCGACTVMIRDAAGS-- 57
Query: 74 ELLVYSVNACLVYVQMCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMA 133
+VNACL+ + G ++ TI+G+ H VQ + +G+QCG+C+PG +++
Sbjct: 58 ----RAVNACLMMLPQIAGKALRTIEGIAAPDGRLHPVQQAMIDHHGSQCGFCTPGFIVS 113
Query: 134 MHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTGYRPILDTFQSFATD 193
M A + + D + L GN+CRCTGY PIL ++ A +
Sbjct: 114 MA-------------AA--------HDRDRKDYDDLLAGNLCRCTGYAPILRAAEAAAGE 152
Query: 194 ACDR 197
Sbjct: 153 PPAD 156
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum,
molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A
{Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2
PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Length = 166
Score = 126 bits (319), Expect = 3e-37
Identities = 51/173 (29%), Positives = 73/173 (42%), Gaps = 29/173 (16%)
Query: 13 KEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVT 72
++ +N V T L+ FIR+ L G C CG CTV +
Sbjct: 4 AHIELTINGHPVEA--LVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDLDGM---- 57
Query: 73 KELLVYSVNACLVYVQMCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVM 132
SV +C ++ NG SI TI+G+ +Q
Sbjct: 58 ------SVKSCTMFAVQANGASITTIEGMAAPDGTLSALQEGF----------------R 95
Query: 133 AMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTGYRPILD 185
MH QCGYC+PGM+M H L E+ +A++ +GGN+CRCTGY+ I+
Sbjct: 96 MMHGLQCGYCTPGMIMRSHRLLQENP-SPTEAEIRFGIGGNLCRCTGYQNIVK 147
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron,
iron-sulfur, metal-binding, oxidoreductase; HET: MCN
FAD; 2.20A {Eubacterium barkeri}
Length = 160
Score = 124 bits (314), Expect = 1e-36
Identities = 42/172 (24%), Positives = 68/172 (39%), Gaps = 30/172 (17%)
Query: 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTK 73
+ LN + ++ RL+D +R+ GL K C EG CG CTV+
Sbjct: 5 TINLNLNGEARSI--VTEPNKRLLDLLREDFGLTSVKEGCSEGECGACTVIFNGD----- 57
Query: 74 ELLVYSVNACLVYVQMCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMA 133
V C + + +I T++G+ + +Q QCGYC+PGM++
Sbjct: 58 -----PVTTCCMLAGQADESTIITLEGVAE-DGKPSLLQQCFLEAGAVQCGYCTPGMILT 111
Query: 134 MHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTGYRPILD 185
L++ + ++ A+ GN+CRCTGY I
Sbjct: 112 AKA-----------------LLDKNPDPTDEEITVAMSGNLCRCTGYIKIHA 146
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase
family, dimer heterotrimers, oxidoreductase; HET: PCD
FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1
d.15.4.2 PDB: 1sb3_C*
Length = 161
Score = 122 bits (309), Expect = 6e-36
Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 30/173 (17%)
Query: 13 KEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVT 72
++ LN + VP L+D++R+ GL GTK C G CG CTV+V R
Sbjct: 3 NILRLTLNGRARED--LVPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVLVDDR---- 56
Query: 73 KELLVYSVNACLVYVQMCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVM 132
AC G + T++ L + K+Q+
Sbjct: 57 ------PRLACSTLAHQVAGKKVETVESLATQGT-LSKLQAAF----------------H 93
Query: 133 AMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTGYRPILD 185
TQCG+C+PGM+MA + L ++ + +++ AL GN+CRCTGY I+
Sbjct: 94 EKLGTQCGFCTPGMIMASEALLRKNP-SPSRDEIKAALAGNLCRCTGYVKIIK 145
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase;
hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga
pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Length = 163
Score = 121 bits (305), Expect = 3e-35
Identities = 51/173 (29%), Positives = 75/173 (43%), Gaps = 30/173 (17%)
Query: 13 KEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVT 72
K + +N K V T L+ F+R+ L G C CG CTV + R
Sbjct: 4 KIITVNVNGKAQEK--AVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDIDGR---- 57
Query: 73 KELLVYSVNACLVYVQMCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVM 132
SV +C C+G + T++GL +K H VQ
Sbjct: 58 ------SVKSCTHLAVQCDGSEVLTVEGLANKGV-LHAVQEGF----------------Y 94
Query: 133 AMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTGYRPILD 185
H QCG+C+PGM+M + FL E+ +A++ + GN+CRCTGY+ I+
Sbjct: 95 KEHGLQCGFCTPGMLMRAYRFLQENP-NPTEAEIRMGMTGNLCRCTGYQNIVK 146
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A
{Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1
d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Length = 907
Score = 129 bits (326), Expect = 6e-35
Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 33/196 (16%)
Query: 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTK 73
+ +N + V L D +R GL G K C +G CG C+V++ +
Sbjct: 3 QKVITVNGIEQNL--FVDAEALLSDVLRQQLGLTGVKVGCEQGQCGACSVILDGK----- 55
Query: 74 ELLVYSVNACLVYV-QMCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVM 132
V AC+ + ++ +G I TI+G+G ++ H +Q L G QCG+CSPG ++
Sbjct: 56 -----VVRACVTKMKRVADGAQITTIEGVGQPEN-LHPLQKAWVLHGGAQCGFCSPGFIV 109
Query: 133 AMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGG--NICRCTGYRPILDTFQSF 190
+ L++ + + DV N CRCTGY+P++D
Sbjct: 110 SA-----------------KGLLDTNADPSREDVRDWFQKHRNACRCTGYKPLVDAVMDA 152
Query: 191 ATDACDRVRQKCADIE 206
A + + + +
Sbjct: 153 AAVINGKKPETDLEFK 168
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD;
HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1
d.15.4.2
Length = 168
Score = 119 bits (300), Expect = 2e-34
Identities = 48/172 (27%), Positives = 72/172 (41%), Gaps = 30/172 (17%)
Query: 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTK 73
+ +N K V L D +R+V GL GTK C +G CG CT+++
Sbjct: 11 RISATINGKPRVF--YVEPRMHLADALREVVGLTGTKIGCEQGVCGSCTILIDGA----- 63
Query: 74 ELLVYSVNACLVYVQMCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMA 133
+ +CL G SI T++GL + + +Q
Sbjct: 64 -----PMRSCLTLAVQAEGCSIETVEGLSQGEK-LNALQDSF----------------RR 101
Query: 134 MHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTGYRPILD 185
H QCG+C+ GM+ S L E+ + +V + GN+CRCTGY I+D
Sbjct: 102 HHALQCGFCTAGMLATARSILAENP-APSRDEVREVMSGNLCRCTGYETIID 152
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta
barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans}
SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Length = 907
Score = 126 bits (319), Expect = 5e-34
Identities = 44/193 (22%), Positives = 75/193 (38%), Gaps = 33/193 (17%)
Query: 17 FALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELL 76
+N + V LVD +R L K C +G CG CTV++ +
Sbjct: 6 LIVNGMARRL--LVSPNDLLVDVLRSQLQLTSVKVGCGKGQCGACTVILDGK-------- 55
Query: 77 VYSVNACLVYV-QMCNGWSIYTIDGLGDKKHGYHKVQSRLALMNGTQCGYCSPGMVMAMH 135
V AC++ + ++ S+ T++G+G H +Q QCG+C+PG +++
Sbjct: 56 --VVRACIIKMSRVAENASVTTLEGIGAPDC-LHPLQHAWIQHGAAQCGFCTPGFIVSA- 111
Query: 136 RTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGG--NICRCTGYRPILDTFQSFATD 193
L++ + + DV NICRCTGY+P++D A
Sbjct: 112 ----------------KALLDENVAPSREDVRDWFQKHHNICRCTGYKPLVDAVMDAAAI 155
Query: 194 ACDRVRQKCADIE 206
+ +
Sbjct: 156 LRGEKTVEEISFK 168
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.023
Identities = 31/187 (16%), Positives = 54/187 (28%), Gaps = 72/187 (38%)
Query: 53 CREGGCGVCTVMVKSRHPVTKELLVYSVNACLV--YVQMCNGWSIYTIDGLGDKKHGYHK 110
E GV + M L + ++ V YV N L K
Sbjct: 327 SLENNEGVPSPM----------LSISNLTQEQVQDYVNKTNS-------HLPAGKQVE-- 367
Query: 111 VQSRLALMNGTQ----CGYCSP----GMVMAMHRTQCGYCSPGM---------------- 146
++L+NG + G P G+ + + + + G+
Sbjct: 368 ----ISLVNGAKNLVVSGP--PQSLYGLNLTLRKAKA---PSGLDQSRIPFSERKLKFSN 418
Query: 147 ----VMA-MHSFLMEHDYKVGKADVER---ALGGNICRCTGYRPILDTFQSFATDACDRV 198
V + HS L+ + D+ + + + P+ DTF D D +
Sbjct: 419 RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI----PVYDTF-----DGSD-L 468
Query: 199 RQKCADI 205
R I
Sbjct: 469 RVLSGSI 475
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia
cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Length = 321
Score = 33.3 bits (77), Expect = 0.041
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 29 DVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKS 67
++P +++ +RD A ++ C G CG C + S
Sbjct: 250 EIPANRSILEVLRD-ANVR-VPSSCESGTCGSCKTALCS 286
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.052
Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 34/64 (53%)
Query: 104 KKHGYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGK 163
+K K+Q+ L L Y + +P + + K
Sbjct: 18 EKQALKKLQASLKL-------Y-ADD------------SAPALAI--------------K 43
Query: 164 ADVE 167
A +E
Sbjct: 44 ATME 47
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose
phosphate pathway, oxidoreductase, 6-phosphogl
dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB:
2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Length = 480
Score = 31.0 bits (71), Expect = 0.27
Identities = 10/17 (58%), Positives = 10/17 (58%)
Query: 33 GTRLVDFIRDVAGLKGT 49
G LVD I D A KGT
Sbjct: 258 GNYLVDVILDEAANKGT 274
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold,
oxidoreductase; HET: FLC; 2.37A {Saccharomyces
cerevisiae}
Length = 497
Score = 30.7 bits (70), Expect = 0.28
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 33 GTRLVDFIRDVAGLKGT 49
G LV+ I D AG KGT
Sbjct: 253 GKPLVEKIMDTAGQKGT 269
>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase
(CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1
c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*
Length = 482
Score = 30.6 bits (70), Expect = 0.30
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 33 GTRLVDFIRDVAGLKGT 49
G L+ IRD AG KGT
Sbjct: 246 GKHLLPKIRDSAGQKGT 262
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt,
oxidoreductase, gluconate utilization; HET: ATR RES P33;
2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*
Length = 474
Score = 30.2 bits (69), Expect = 0.48
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 33 GTRLVDFIRDVAGLKGT 49
+VD I D AG KGT
Sbjct: 250 EGYIVDKILDKAGNKGT 266
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase,
CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP:
a.100.1.1 c.2.1.6
Length = 478
Score = 30.0 bits (68), Expect = 0.52
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 31 PVGTRLVDFIRDVAGLKGT 49
G+ L + + D G KGT
Sbjct: 246 KDGSYLTEHVMDRIGSKGT 264
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein,
zinc, zinc-finger, structural genomics, PSI-2; NMR
{Thermoplasma acidophilum} SCOP: g.41.8.8
Length = 55
Score = 27.5 bits (61), Expect = 0.66
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 104 KKHGYHKVQSRLALMNGTQCGYCSPGMVMAMH--RTQCGYC 142
+K +++ + C C PG+ +A H R CG C
Sbjct: 2 QKRELYEIADGKLVRKHRFCPRCGPGVFLAEHADRYSCGRC 42
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_9
Length = 189
Score = 28.2 bits (62), Expect = 1.6
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 104 KKHGYHKVQSRLALMNGTQCGYCS-----PGMVMAMHRTQCGYCSPGMVMAMHS 152
KK Y + T+ G + +++ + C C PG+ MA H
Sbjct: 76 KKKSYTTKKKTKHRHVHTKLGALAFYKLENNGKVSLQQKGCPKCGPGIFMAKHY 129
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein,
iron-sulfur, electron transport; 1.90A {Haloarcula
marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Length = 128
Score = 26.6 bits (59), Expect = 3.1
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 51 YMCREGGCGVCTVMVKS 67
+ CR G C C +V
Sbjct: 61 FSCRAGACANCAAIVLE 77
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding,
ferredoxin, NADH-binding, oxidoreductase; HET: FAD;
1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2
d.15.4.2
Length = 338
Score = 27.3 bits (61), Expect = 3.2
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 51 YMCREGGCGVCTVMVKS 67
CREG CG C +S
Sbjct: 39 MDCREGECGTCRAFCES 55
>2o6y_A Putative histidine ammonia-lyase; methylidene imidazolone
prosthetic group; HET: MDO; 1.50A {Rhodobacter
sphaeroides} PDB: 2o7b_A* 2o7d_A* 2o7e_A* 2o78_A*
2o7f_A*
Length = 521
Score = 26.8 bits (60), Expect = 6.2
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 115 LALMNGTQCG 124
LAL+NGT
Sbjct: 197 LALVNGTSAM 206
>2qve_A Tyrosine aminomutase; MIO, enediyne, transferase; HET: MDO 247;
2.00A {Streptomyces globisporus} PDB: 2rjr_A* 2rjs_A*
2ohy_A* 3kdz_A* 3kdy_A*
Length = 526
Score = 26.5 bits (59), Expect = 7.1
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 115 LALMNGTQCG 124
LAL+NGT
Sbjct: 188 LALINGTSGM 197
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin,
oxidoreductase; NMR {Methylococcus capsulatus str}
SCOP: d.15.4.2
Length = 98
Score = 25.3 bits (56), Expect = 7.5
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 51 YMCREGGCGVCTVMVKS 67
CREGGC C +
Sbjct: 40 SSCREGGCATCKALCSE 56
>3unv_A ADMH; MIO, lyase; HET: KWS SFE PHE; 1.54A {Pantoea agglomerans}
Length = 547
Score = 26.5 bits (59), Expect = 7.6
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 115 LALMNGTQCG 124
LAL+NGT
Sbjct: 214 LALINGTSAM 223
>1gkm_A Histidase, HAL, histidine ammonia-lyase; histidine degradation;
HET: MDO; 1.0A {Pseudomonas putida} SCOP: a.127.1.2 PDB:
1b8f_A* 1gkj_A* 1eb4_A* 1gk3_A 1gk2_A
Length = 507
Score = 26.0 bits (58), Expect = 9.7
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 115 LALMNGTQCG 124
LAL+NGTQ
Sbjct: 189 LALLNGTQAS 198
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.139 0.449
Gapped
Lambda K H
0.267 0.0742 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,265,770
Number of extensions: 189972
Number of successful extensions: 583
Number of sequences better than 10.0: 1
Number of HSP's gapped: 547
Number of HSP's successfully gapped: 45
Length of query: 206
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 117
Effective length of database: 4,216,824
Effective search space: 493368408
Effective search space used: 493368408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (24.9 bits)