RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7831
(206 letters)
>d1v97a2 d.15.4.2 (A:3-92) Xanthine oxidase, N-terminal domain {Cow
(Bos taurus) [TaxId: 9913]}
Length = 90
Score = 88.0 bits (218), Expect = 1e-23
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 12 GKEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPV 71
E+ F +N K ++ T L+ ++R GL+GTK C EGGCG CTVM+ +
Sbjct: 1 ADELVFFVNGKKVVE-KNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDRL 59
Query: 72 TKELLVYSVNACLVYVQMCNGWSIYTIDGLG 102
+++ +S NACL + + ++ T++G+G
Sbjct: 60 QDKIIHFSANACLAPICTLHHVAVTTVEGIG 90
>d1v97a1 a.56.1.1 (A:93-165) Xanthine oxidase, domain 2 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 73
Score = 68.0 bits (166), Expect = 3e-16
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 17/83 (20%)
Query: 109 HKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVER 168
H VQ R+A +G+QCG+C+PG+VM+M+ L+ + + ++E
Sbjct: 7 HPVQERIAKSHGSQCGFCTPGIVMSMY-----------------TLLRNQPEPTVEEIED 49
Query: 169 ALGGNICRCTGYRPILDTFQSFA 191
A GN+CRCTGYRPIL F++FA
Sbjct: 50 AFQGNLCRCTGYRPILQGFRTFA 72
>d1jroa2 d.15.4.2 (A:1-84) Xanthine dehydrogenase chain A,
N-terminal domain {Rhodobacter capsulatus [TaxId: 1061]}
Length = 84
Score = 67.2 bits (164), Expect = 1e-15
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTK 73
E+ F LN + V L++ +R GL GTK C EG CG CTVM++
Sbjct: 2 EIAFLLNGETRRV-RIEDPTQSLLELLRA-EGLTGTKEGCNEGDCGACTVMIRDAAG--- 56
Query: 74 ELLVYSVNACLVYVQMCNGWSIYTIDGLG 102
+VNACL+ + G ++ TI+G+
Sbjct: 57 ---SRAVNACLMMLPQIAGKALRTIEGIA 82
>d1n62a2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase
iron-sulfur protein, N-domain {Oligotropha
carboxidovorans, formerly Pseudomonas carboxydovorans
[TaxId: 40137]}
Length = 79
Score = 66.8 bits (163), Expect = 1e-15
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 12/88 (13%)
Query: 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTK 73
++ +N V T L+ FIR+ L G C CG CTV +
Sbjct: 3 HIELTINGHPVEA--LVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDLDGM----- 55
Query: 74 ELLVYSVNACLVYVQMCNGWSIYTIDGL 101
SV +C ++ NG SI TI+G+
Sbjct: 56 -----SVKSCTMFAVQANGASITTIEGM 78
>d1rm6c2 d.15.4.2 (C:1-81) 4-hydroxybenzoyl-CoA reductase gamma
subunit HrcC, N-terminal domain {Thauera aromatica
[TaxId: 59405]}
Length = 81
Score = 66.8 bits (163), Expect = 1e-15
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 12/90 (13%)
Query: 13 KEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVT 72
++ LN + VP L+D++R+ GL GTK C G CG CTV+V R
Sbjct: 3 NILRLTLNGRARED--LVPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVLVDDR---- 56
Query: 73 KELLVYSVNACLVYVQMCNGWSIYTIDGLG 102
AC G + T++ L
Sbjct: 57 ------PRLACSTLAHQVAGKKVETVESLA 80
>d1t3qa2 d.15.4.2 (A:7-87) Quinoline 2-oxidoreductase small subunit
QorS, N-domain {Pseudomonas putida [TaxId: 303]}
Length = 81
Score = 66.0 bits (161), Expect = 2e-15
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 12/88 (13%)
Query: 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTK 73
+ +N K V L D +R+V GL GTK C +G CG CT+++
Sbjct: 5 RISATINGKPRVF--YVEPRMHLADALREVVGLTGTKIGCEQGVCGSCTILIDGA----- 57
Query: 74 ELLVYSVNACLVYVQMCNGWSIYTIDGL 101
+ +CL G SI T++GL
Sbjct: 58 -----PMRSCLTLAVQAEGCSIETVEGL 80
>d1ffva2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase
iron-sulfur protein, N-domain {Hydrogenophaga
pseudoflava [TaxId: 47421]}
Length = 79
Score = 65.6 bits (160), Expect = 4e-15
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Query: 13 KEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVT 72
K + +N K V T L+ F+R+ L G C CG CTV + R
Sbjct: 2 KIITVNVNGKAQEK--AVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDIDGR---- 55
Query: 73 KELLVYSVNACLVYVQMCNGWSIYTIDGL 101
SV +C C+G + T++GL
Sbjct: 56 ------SVKSCTHLAVQCDGSEVLTVEGL 78
>d1dgja2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal
domain {Desulfovibrio desulfuricans [TaxId: 876]}
Length = 80
Score = 65.2 bits (159), Expect = 4e-15
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 13/91 (14%)
Query: 13 KEVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVT 72
+ +N + V LVD +R L K C +G CG CTV++ +
Sbjct: 2 ETKTLIVNGMARRL--LVSPNDLLVDVLRSQLQLTSVKVGCGKGQCGACTVILDGK---- 55
Query: 73 KELLVYSVNACLVYV-QMCNGWSIYTIDGLG 102
V AC++ + ++ S+ T++G+G
Sbjct: 56 ------VVRACIIKMSRVAENASVTTLEGIG 80
>d1vlba2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal
domain {Desulfovibrio gigas [TaxId: 879]}
Length = 80
Score = 62.9 bits (153), Expect = 3e-14
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 13/90 (14%)
Query: 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTK 73
+ +N + V L D +R GL G K C +G CG C+V++ +
Sbjct: 3 QKVITVNGIEQNL--FVDAEALLSDVLRQQLGLTGVKVGCEQGQCGACSVILDGK----- 55
Query: 74 ELLVYSVNACLVYV-QMCNGWSIYTIDGLG 102
V AC+ + ++ +G I TI+G+G
Sbjct: 56 -----VVRACVTKMKRVADGAQITTIEGVG 80
>d1t3qa1 a.56.1.1 (A:88-168) Quinoline 2-oxidoreductase small
subunit QorS, C-domain {Pseudomonas putida [TaxId: 303]}
Length = 81
Score = 61.5 bits (149), Expect = 1e-13
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 132 MAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTGYRPILDTFQSFA 191
H QCG+C+ GM+ S ++ + + +V + GN+CRCTGY I+D A
Sbjct: 13 RRHHALQCGFCTAGMLATARS-ILAENPAPSRDEVREVMSGNLCRCTGYETIIDAITDPA 71
Query: 192 TDACDR 197
R
Sbjct: 72 VAEAAR 77
>d1n62a1 a.56.1.1 (A:82-163) Carbon monoxide (CO) dehydrogenase
iron-sulfur protein, C-domain {Oligotropha
carboxidovorans, formerly Pseudomonas carboxydovorans
[TaxId: 40137]}
Length = 82
Score = 60.8 bits (147), Expect = 2e-13
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 132 MAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTGYRPILDTFQSFA 191
MH QCGYC+PGM+M H ++ + +A++ +GGN+CRCTGY+ I+ Q A
Sbjct: 14 RMMHGLQCGYCTPGMIMRSHRL-LQENPSPTEAEIRFGIGGNLCRCTGYQNIVKAIQYAA 72
>d1ffva1 a.56.1.1 (A:82-157) Carbon monoxide (CO) dehydrogenase
iron-sulfur protein, C-domain {Hydrogenophaga
pseudoflava [TaxId: 47421]}
Length = 76
Score = 59.6 bits (144), Expect = 5e-13
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 132 MAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTGYRPILDTFQSFA 191
H QCG+C+PGM+M + ++ + +A++ + GN+CRCTGY+ I+ Q A
Sbjct: 13 YKEHGLQCGFCTPGMLMRAY-RFLQENPNPTEAEIRMGMTGNLCRCTGYQNIVKAVQYAA 71
>d1rm6c1 a.56.1.1 (C:82-157) 4-hydroxybenzoyl-CoA reductase gamma
subunit HrcC, C-terminal domain {Thauera aromatica
[TaxId: 59405]}
Length = 76
Score = 58.9 bits (142), Expect = 1e-12
Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 132 MAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTGYRPILDTFQSFA 191
TQCG+C+PGM+MA + L ++ + +++ AL GN+CRCTGY I+ + ++ A
Sbjct: 12 HEKLGTQCGFCTPGMIMASEALLRKNPSPS-RDEIKAALAGNLCRCTGYVKIIKSVETAA 70
>d1jroa1 a.56.1.1 (A:85-166) Xanthine dehydrogenase chain A, domain
2 {Rhodobacter capsulatus [TaxId: 1061]}
Length = 82
Score = 58.1 bits (140), Expect = 3e-12
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 132 MAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICRCTGYRPILDTFQSFA 191
+ H +QCG+C+PG +++M + D + L GN+CRCTGY PIL ++ A
Sbjct: 12 IDHHGSQCGFCTPGFIVSMAAAHDRDRK-----DYDDLLAGNLCRCTGYAPILRAAEAAA 66
Query: 192 TDA 194
+
Sbjct: 67 GEP 69
>d1vlba1 a.56.1.1 (A:81-193) Aldehyde oxidoreductase, domain 2
{Desulfovibrio gigas [TaxId: 879]}
Length = 113
Score = 53.2 bits (127), Expect = 4e-10
Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 15/85 (17%)
Query: 107 GYHKVQSRLALMNGTQCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADV 166
H +Q L G QCG+CSPG +++ P F
Sbjct: 4 NLHPLQKAWVLHGGAQCGFCSPGFIVSAKGLLDTNADPSREDVRDWF------------- 50
Query: 167 ERALGGNICRCTGYRPILDTFQSFA 191
N CRCTGY+P++D A
Sbjct: 51 --QKHRNACRCTGYKPLVDAVMDAA 73
>d1frda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena
sp.), pcc 7119 and 7120 [TaxId: 1167]}
Length = 98
Score = 28.5 bits (63), Expect = 0.18
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHP 70
+V+ ++ ++ T ++D + G++ + C G C C V
Sbjct: 4 QVRLINKKQDIDTTIEIDEETTILDGAEE-NGIE-LPFSCHSGSCSSCVGKVVEGEV 58
>d1kf6b2 d.15.4.2 (B:1-105) Fumarate reductase iron-sulfur
protein, N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 105
Score = 28.7 bits (64), Expect = 0.18
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 2 VYREDPLPKAGKEVKFALNEKFYTV--GEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCG 59
V R +P EV A + FY V + L ++A ++ CR CG
Sbjct: 10 VVRYNP------EVDTAPHSAFYEVPYDATTSLLDALGYIKDNLAPDLSYRWSCRMAICG 63
Query: 60 VCTVMVKSRH 69
C +MV +
Sbjct: 64 SCGMMVNNVP 73
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 290
Score = 29.9 bits (67), Expect = 0.19
Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 8/65 (12%)
Query: 122 QCGYCSPGMVMAMHRTQCGYCSPGMVMAMHSFLMEHDYKVGKADVERALGGNICR-CTGY 180
C C R +C +C +A S EHD + + V RA C C GY
Sbjct: 192 SCSLC--ACEWHYVRIKCSHCEESKHLAYLSL--EHDGQPAEKAVLRA---ETCPSCQGY 244
Query: 181 RPILD 185
Sbjct: 245 LKQFY 249
>d2k4xa1 g.41.8.8 (A:1-55) Ribosomal protein S27ae {Thermoplasma
acidophilum [TaxId: 2303]}
Length = 55
Score = 26.3 bits (58), Expect = 0.52
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 104 KKHGYHKVQSRLALMNGTQCGYCSPGMVMAMH--RTQCGYC 142
+K +++ + C C PG+ +A H R CG C
Sbjct: 2 QKRELYEIADGKLVRKHRFCPRCGPGVFLAEHADRYSCGRC 42
>d1czpa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena
sp.), pcc 7119 and 7120 [TaxId: 1167]}
Length = 98
Score = 26.5 bits (58), Expect = 1.1
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 29 DVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHP 70
+VP ++D + G + CR G C C + S
Sbjct: 19 EVPDDEYILDAAEE-QGYD-LPFSCRAGACSTCAGKLVSGTV 58
>d2piaa3 d.15.4.2 (A:224-321) Phthalate dioxygenase reductase,
C-terminal domain {Pseudomonas cepacia, db01 [TaxId:
292]}
Length = 98
Score = 26.0 bits (57), Expect = 1.6
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 29 DVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKS 67
++P +++ +RD C G CG C + S
Sbjct: 27 EIPANRSILEVLRDAN--VRVPSSCESGTCGSCKTALCS 63
>d1krha3 d.15.4.2 (A:2-105) Benzoate dioxygenase reductase,
N-terminal domain {Acinetobacter sp. [TaxId: 472]}
Length = 104
Score = 25.7 bits (56), Expect = 2.3
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 29 DVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKS 67
+ G L D + CREG CG C +S
Sbjct: 18 CIAQGETLSDAAYR-QQI-NIPMDCREGECGTCRAFCES 54
>d1a70a_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Spinach (Spinacia
oleracea) [TaxId: 3562]}
Length = 97
Score = 25.3 bits (55), Expect = 2.9
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 14 EVKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKS 67
+V P ++D + G+ Y CR G C C +K+
Sbjct: 4 KVTLVTPTGNVEF--QCPDDVYILDAAEE-EGID-LPYSCRAGSCSSCAGKLKT 53
>d1frra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense
[TaxId: 3258]}
Length = 95
Score = 25.0 bits (54), Expect = 3.1
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 29 DVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKS 67
DVP GT ++D + AG + CR G C C V S
Sbjct: 16 DVPEGTTILDAAEE-AGYD-LPFSCRAGACSSCLGKVVS 52
>d1rl2a2 b.40.4.5 (A:60-125) N-terminal domain of ribosomal
protein L2 {Bacillus stearothermophilus [TaxId: 1422]}
Length = 66
Score = 24.3 bits (53), Expect = 3.4
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 35 RLVDFIRDVAGLKGT-KYMCREGGCGVCTVMVKSRH 69
R++DF RD G+ G + + ++
Sbjct: 3 RIIDFKRDKDGIPGRVATIEYDPNRSANIALINYAD 38
>d1doia_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Archaeon Haloarcula
marismortui [TaxId: 2238]}
Length = 128
Score = 25.3 bits (55), Expect = 4.3
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 29 DVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTV 63
+V G +++ G + CR G C C
Sbjct: 41 EVNEGEYILEAAEA-QGYD-WPFSCRAGACANCAA 73
>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 102
Score = 24.5 bits (53), Expect = 5.0
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 28 EDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKSRHPVTKELLVYSVNACLVYV 87
ED+P R + R GL G + E G G+ + + P + ++ V
Sbjct: 4 EDIPREPRRIVIHRGSTGL-GFNIVGGEDGEGIFISFILAGGPADLSGELR-KGDQILSV 61
Query: 88 QMCNGWSI 95
NG +
Sbjct: 62 ---NGVDL 66
>d1iuea_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 98
Score = 24.2 bits (52), Expect = 6.5
Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 4/53 (7%)
Query: 15 VKFALNEKFYTVGEDVPVGTRLVDFIRDVAGLKGTKYMCREGGCGVCTVMVKS 67
+ N+ + + ++D ++ Y CR G C C +
Sbjct: 5 ITLRTNDGEKKI--ECNEDEYILDASER-QNVE-LPYSCRGGSCSTCAAKLVE 53
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.139 0.449
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 810,348
Number of extensions: 36907
Number of successful extensions: 196
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 44
Length of query: 206
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 125
Effective length of database: 1,295,466
Effective search space: 161933250
Effective search space used: 161933250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.7 bits)