BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7834
(492 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S-
Adenosyl Homocysteine
pdb|1KR5|A Chain A, Crystal Structure Of Human L-Isoaspartyl Methyltransferase
Length = 226
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 85/172 (49%), Positives = 110/172 (63%), Gaps = 4/172 (2%)
Query: 148 RFGHIASPKVESVMRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKD 207
+ G I + KV VM + DR + + NPY D PQS+GF + +S+P +HA ALE+L D
Sbjct: 18 KNGIIKTDKVFEVMLATDRSHYAK----CNPYMDSPQSIGFQATISAPHMHAYALELLFD 73
Query: 208 YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGG 267
L GAK LD+GSGSG LTAC A MVG TGKV ++HI++LV + ++ P L+ G
Sbjct: 74 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSG 133
Query: 268 RVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQLKPGGVMWFTIGNA 319
RVQ V GDGR G+A E PYD I+VG A P L+DQLKPGG + +G A
Sbjct: 134 RVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPA 185
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 88/147 (59%), Gaps = 9/147 (6%)
Query: 1 MLAVDRGHYTTWRPYANCITNIGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKV 60
MLA DR HY PY + +IG+ A + AP A L+ L ++L EG K
Sbjct: 31 MLATDRSHYAKCNPYMDSPQSIGFQATISAPHM---------HAYALELLFDQLHEGAKA 81
Query: 61 LDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGD 120
LD+GSG+G TA A VG TGKVIGI+HI +LV + +NV +P + GR++ V+GD
Sbjct: 82 LDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGD 141
Query: 121 GRKGYLDEAPYDIIHVGGSIEDIPEGV 147
GR GY +EAPYD IHVG + +P+ +
Sbjct: 142 GRMGYAEEAPYDAIHVGAAAPVVPQAL 168
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 51/76 (67%)
Query: 381 VHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSM 440
+HA ALE+L D L GAK LD+GSGSG LTAC A MVG TGKV ++HI++LV + ++
Sbjct: 63 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNV 122
Query: 441 HTYYPNLMEGGRVQFT 456
P L+ GRVQ
Sbjct: 123 RKDDPTLLSSGRVQLV 138
>pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With
S-Adenosyl-L- Homocysteine
Length = 227
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 115/188 (61%), Gaps = 10/188 (5%)
Query: 136 VGGSIEDIPEGVR-FGHIASPKVESVMRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSS 194
VG + ED+ ++ G IAS V M+ DR+ + R NPY D PQ +G G +S+
Sbjct: 12 VGANNEDLIRQLKDHGVIASDAVAQAMKETDRKHYSPR----NPYMDAPQPIGGGVTISA 67
Query: 195 PKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTG-----KVYAVEHIEDLV 249
P +HA ALE L+D+LKPGA++LD+GSGSGYLTAC + G ++ +EH +LV
Sbjct: 68 PHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELV 127
Query: 250 AQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQLKPG 309
++ +++T ++++ G++ V+GDGR+G+ PY+ I+VG A P +L++QL G
Sbjct: 128 RRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASG 187
Query: 310 GVMWFTIG 317
G + +G
Sbjct: 188 GRLIVPVG 195
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 77/149 (51%), Gaps = 14/149 (9%)
Query: 1 MLAVDRGHYTTWRPYANCITNIGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKV 60
M DR HY+ PY + IG G + AP A L+ L + L G ++
Sbjct: 38 MKETDRKHYSPRNPYMDAPQPIGGGVTISAPHM---------HAFALEYLRDHLKPGARI 88
Query: 61 LDIGSGNGYFTALL-----AWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIK 115
LD+GSG+GY TA A V +++GIEH +LV+R+ N+ + + + G++
Sbjct: 89 LDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLL 148
Query: 116 FVLGDGRKGYLDEAPYDIIHVGGSIEDIP 144
V GDGRKGY APY+ IHVG + D P
Sbjct: 149 IVEGDGRKGYPPNAPYNAIHVGAAAPDTP 177
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 54/82 (65%), Gaps = 5/82 (6%)
Query: 381 VHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTG-----KVYAVEHIEDLVAQ 435
+HA ALE L+D+LKPGA++LD+GSGSGYLTAC + G ++ +EH +LV +
Sbjct: 70 MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRR 129
Query: 436 ANKSMHTYYPNLMEGGRVQFTE 457
+ +++T ++++ G++ E
Sbjct: 130 SKANLNTDDRSMLDSGQLLIVE 151
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 87/173 (50%), Gaps = 9/173 (5%)
Query: 147 VRFGHIASPKVESVMRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILK 206
+R G+I S +V + + R F+ + Y D P +G+G +S+ + E+L
Sbjct: 15 IREGYIKSKRVIDALLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIHMVGMMCELLD 74
Query: 207 DYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTY-YPNLME 265
LKPG KVL+IG+G GY A A +VG G V ++E I +L +A +++ Y N++
Sbjct: 75 --LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVI- 131
Query: 266 GGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQLKPGGVMWFTIGN 318
+ GDG G+ PYD IY A P L+ QLK GG + +G
Sbjct: 132 -----VIVGDGTLGYEPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVGR 179
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 112
+L G KVL+IG+G GY A+ A VG+ G V+ IE IP+L ++A + +
Sbjct: 74 DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTL-----RKLGYD 128
Query: 113 RIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 145
+ ++GDG GY APYD I+ + IPE
Sbjct: 129 NVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIPE 161
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTY-YPNLM 448
LKPG KVL+IG+G GY A A +VG G V ++E I +L +A +++ Y N++
Sbjct: 75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVI 131
>pdb|3LBF|A Chain A, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|B Chain B, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|C Chain C, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|D Chain D, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
Length = 210
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 10/195 (5%)
Query: 134 IHVGGSIEDIPEGVRFGHIASPKVESVMRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMS 193
+ V ++ + + +R I +V + + ++ R +F++ + +I +G G +S
Sbjct: 2 LMVSRRVQALLDQLRAQGIQDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQTIS 61
Query: 194 SPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQAN 253
P + A+ E+L+ L P ++VL+IG+GSGY TA +AH+V V +VE I+ L QA
Sbjct: 62 QPYMVARMTELLE--LTPQSRVLEIGTGSGYQTAILAHLVQ---HVCSVERIKGLQWQAR 116
Query: 254 KSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQLKPGGVMW 313
+ + ++ V GDG +G A P+D I V A P LM QL GG++
Sbjct: 117 RRLKN-----LDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILV 171
Query: 314 FTIGNAEEMLKNNRR 328
+G + LK RR
Sbjct: 172 LPVGEEHQYLKRVRR 186
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 112
ELT +VL+IG+G+GY TA+LA V V I+ + +R N+ N
Sbjct: 74 ELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHN------- 126
Query: 113 RIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEGV 147
+ GDG +G+ AP+D I V + +IP +
Sbjct: 127 -VSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTAL 160
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 323 LKNNRRTESNLAVVKAHKKDHGEWEEEFMGRLWRLPALASVEE---QKYWYH---PNGFY 376
L +RR ++ L ++A G +E+ + L +P V+E QK W + P G
Sbjct: 2 LMVSRRVQALLDQLRAQ----GIQDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQG 57
Query: 377 DDLD---VHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLV 433
+ + A+ E+L+ L P ++VL+IG+GSGY TA +AH+V V +VE I+ L
Sbjct: 58 QTISQPYMVARMTELLE--LTPQSRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQ 112
Query: 434 AQANKSM 440
QA + +
Sbjct: 113 WQARRRL 119
>pdb|2PBF|A Chain A, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
pdb|2PBF|B Chain B, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
Length = 227
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 12/177 (6%)
Query: 148 RFGHIASPKVESVMRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKD 207
R G I V + M +DR ++I+ PY D P + G +S+P +HA +L+ L +
Sbjct: 21 RRGIIDDDDVYNTMLQVDRGKYIKEI----PYIDTPVYISHGVTISAPHMHALSLKRLIN 76
Query: 208 YLKPGAKVLDIGSGSGYLTACMA----HMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNL 263
LKPG++ +D+GSGSGYLT CMA + V +E ++DLV + +++ P L
Sbjct: 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPEL 136
Query: 264 MEGGRVQFVDGD----GREGHAAEGPYDVIYVGGAVHHYPFKLMDQLKPGGVMWFTI 316
++ + + + E G +D I+VG + P L+D L G + I
Sbjct: 137 LKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASELPEILVDLLAENGKLIIPI 193
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 69/153 (45%), Gaps = 17/153 (11%)
Query: 1 MLAVDRGHYTTWRPYANCITNIGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKV 60
ML VDRG Y PY + I +G + AP A+ L L L G +
Sbjct: 34 MLQVDRGKYIKEIPYIDTPVYISHGVTISAPHM---------HALSLKRLINVLKPGSRA 84
Query: 61 LDIGSGNGYFTALLAWCV----GKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKF 116
+D+GSG+GY T +A + K VIG+E + LV + N+ PE +K K
Sbjct: 85 IDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKI 144
Query: 117 VLGDGRKGYLDEAP----YDIIHVGGSIEDIPE 145
+ + + +E +D IHVG S ++PE
Sbjct: 145 IHKNIYQVNEEEKKELGLFDAIHVGASASELPE 177
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 381 VHAQALEILKDYLKPGAKVLDIGSGSGYLTACMA----HMVGPTGKVYAVEHIEDLVAQA 436
+HA +L+ L + LKPG++ +D+GSGSGYLT CMA + V +E ++DLV +
Sbjct: 66 MHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFS 125
Query: 437 NKSMHTYYPNLME 449
+++ P L++
Sbjct: 126 LENIKRDKPELLK 138
>pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosylmethionine
pdb|1JG3|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG3|B Chain B, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG2|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With Adenosine
pdb|1JG1|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosyl-L-Homocysteine
Length = 235
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 97/200 (48%), Gaps = 22/200 (11%)
Query: 150 GHIASPKVESVMRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKDYL 209
G I S +VE R +E + D P + G +S+P + A LEI L
Sbjct: 32 GIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIAN--L 89
Query: 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGG-- 267
KPG +L++G+GSG+ A ++ +V VY +E I +LV A + NL G
Sbjct: 90 KPGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKR-------NLERAGVK 140
Query: 268 RVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQLKPGGVMWFTIGNA---EEMLK 324
V + GDG +G + PYDVI V P L++QLK GG + +G+ +E+L+
Sbjct: 141 NVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYHLWQELLE 200
Query: 325 NNRRTESNLAVVKAHKKDHG 344
R+T+ + + K+HG
Sbjct: 201 -VRKTKDGIKI-----KNHG 214
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Query: 54 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR 113
L G +L++G+G+G+ AL++ V KT V IE IP+LV+ A N+ E
Sbjct: 89 LKPGMNILEVGTGSGWNAALISEIV-KT-DVYTIERIPELVEFAKRNL-----ERAGVKN 141
Query: 114 IKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 145
+ +LGDG KG+ +APYD+I V IPE
Sbjct: 142 VHVILGDGSKGFPPKAPYDVIIVTAGAPKIPE 173
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMH 441
LKPG +L++G+GSG+ A ++ +V VY +E I +LV A +++
Sbjct: 89 LKPGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLE 135
>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase
pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransferase
Length = 317
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 68/144 (47%), Gaps = 12/144 (8%)
Query: 190 SVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLV 249
S S P + A +E + L G +VL+IG G+GY A M+ +VG G V +VE+ +
Sbjct: 56 STSSQPSLMALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKIC 113
Query: 250 AQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQLKPG 309
A +++ + V FV GDG G PYDVI+V V P QLK G
Sbjct: 114 EIAKRNVER-----LGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEG 168
Query: 310 GVMWFTIGNAEEMLKNNRRTESNL 333
G + I LK +RR + L
Sbjct: 169 GRVIVPIN-----LKLSRRQPAFL 187
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 5/92 (5%)
Query: 54 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR 113
L +G +VL+IG G GY A+++ VG+ G V+ +E+ ++ + A NV E +
Sbjct: 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNV-----ERLGIEN 127
Query: 114 IKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 145
+ FV GDG G + +PYD+I V ++++PE
Sbjct: 128 VIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPE 159
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMH 441
L G +VL+IG G+GY A M+ +VG G V +VE+ + A +++
Sbjct: 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVE 121
>pdb|1VBF|A Chain A, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|B Chain B, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|C Chain C, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|D Chain D, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
Length = 231
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 10/166 (6%)
Query: 152 IASPKVESVMRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKDYLKP 211
I + ++ +DR F+ + + Y ++L +++ ++ + + L
Sbjct: 11 IKTQELAEAFNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNLGIFXLDELDLHK 70
Query: 212 GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQF 271
G KVL+IG+G GY TA +A +V KV +VE E A+K + +YY N ++
Sbjct: 71 GQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKXYNYASKLL-SYYNN------IKL 120
Query: 272 VDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQLKPGGVMWFTIG 317
+ GDG G+ E PYD + V K +QLK GG+ IG
Sbjct: 121 ILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIXILPIG 166
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 12/90 (13%)
Query: 47 LDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNP 106
LD+L +L +G+KVL+IG+G GY+TAL+A V KV+ +E + +N S
Sbjct: 63 LDEL--DLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVE-----INEKXYNYASKLL 112
Query: 107 EFVKDGRIKFVLGDGRKGYLDEAPYDIIHV 136
+ + IK +LGDG GY +E PYD + V
Sbjct: 113 SYYNN--IKLILGDGTLGYEEEKPYDRVVV 140
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 16/71 (22%)
Query: 377 DDLDVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQA 436
D+LD+H G KVL+IG+G GY TA +A +V KV +VE E A
Sbjct: 64 DELDLHK------------GQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKXYNYA 108
Query: 437 NKSMHTYYPNL 447
+K + +YY N+
Sbjct: 109 SKLL-SYYNNI 118
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 58/108 (53%), Gaps = 8/108 (7%)
Query: 203 EILKDY-LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYP 261
++LK++ LK G VLD+G+G+G+ ++ MVG GKVYA++ E++V A + +
Sbjct: 28 KVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKV----- 82
Query: 262 NLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHY--PFKLMDQLK 307
N + V+ + + + + D I++ H P K +++LK
Sbjct: 83 NKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELK 130
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 387 EILKDY-LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQA 436
++LK++ LK G VLD+G+G+G+ ++ MVG GKVYA++ E++V A
Sbjct: 28 KVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYA 78
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 13/121 (10%)
Query: 32 FQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIP 91
D ++ F VL + L EG VLD+G+G G++ L+ VG+ GKV I+
Sbjct: 15 LDDPSRLELFDPEKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQE 72
Query: 92 QLVQRATHNVIS---GNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEGVR 148
++V A V N E +K K L D D I + + ++ E ++
Sbjct: 73 EMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNT--------VDFIFMAFTFHELSEPLK 124
Query: 149 F 149
F
Sbjct: 125 F 125
>pdb|2YVL|A Chain A, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|B Chain B, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|C Chain C, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|D Chain D, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
Length = 248
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 11/150 (7%)
Query: 205 LKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLM 264
LK L +VL+ G+GSG L A ++ + G+V+ E +E+ A K++ + NL
Sbjct: 85 LKLNLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKF--NL- 138
Query: 265 EGGRVQFVDGDGREGHAAEGPYDVIYVG-GAVHHYPFKLMDQLKPGGVMWFTIGNAEEML 323
G V+F + D ++ EG + +V HY K+ L G + F + A +++
Sbjct: 139 -GKNVKFFNVDFKDAEVPEGIFHAAFVDVREPWHYLEKVHKSLMEGAPVGFLLPTANQVI 197
Query: 324 KNNRRTES---NLAVVKAHKKDHGEWEEEF 350
K E+ NL VV+ + + E F
Sbjct: 198 KLLESIENYFGNLEVVEILHRHYKTISERF 227
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 389 LKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLM 448
LK L +VL+ G+GSG L A ++ + G+V+ E +E+ A K++ + NL
Sbjct: 85 LKLNLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKF--NL- 138
Query: 449 EGGRVQF 455
G V+F
Sbjct: 139 -GKNVKF 144
>pdb|1I9G|A Chain A, Crystal Structure Of An Adomet Dependent Methyltransferase
Length = 280
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 395 PGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQ 454
PGA+VL+ G+GSG LT + VGP G+V + E D A +++ Y + R+
Sbjct: 99 PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLV 158
Query: 455 FTEMAEK 461
+++A+
Sbjct: 159 VSDLADS 165
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 159 SVMRSIDRRRF-IERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKDYLKPGAKVLD 217
SV++S + F + RP++ + +P+ G + PK AQ + + + PGA+VL+
Sbjct: 52 SVVKSSNGALFLVLRPLLVDYVMSMPR----GPQVIYPKDAAQIVH--EGDIFPGARVLE 105
Query: 218 IGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYY 260
G+GSG LT + VGP G+V + E D A +++ Y
Sbjct: 106 AGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCY 148
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNV 101
++ G +VL+ G+G+G T L VG G+VI E + A NV
Sbjct: 96 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNV 144
>pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase
(Tm0748) From Thermotoga Maritima At 1.65 A Resolution
Length = 277
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 82/173 (47%), Gaps = 25/173 (14%)
Query: 301 KLMDQLKPGGVMWFTIGNAEEML---KNNRRTESNLAVVKAHKKDHGEWEEEFMGRLWRL 357
K+ D LKPG + + + E L + +++ ++L ++ D E E+ G + R
Sbjct: 15 KVADTLKPGDRVLLSFEDESEFLVDLEKDKKLHTHLGII-----DLNEVFEKGPGEIIR- 68
Query: 358 PALASVEEQKYWYHPNGFYDDLDVHAQALEIL--KDY--------LKPGAKVLDIGSGSG 407
S ++ Y P+ D++ + +I+ KD +K G +++D G GSG
Sbjct: 69 ---TSAGKKGYILIPS-LIDEIMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSG 124
Query: 408 YLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFTEMAE 460
+ A +A VG +GKV+A E E+ A ++ + L+E ++ +++E
Sbjct: 125 AMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW--GLIERVTIKVRDISE 175
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTY 259
+K G +++D G GSG + A +A VG +GKV+A E E+ A ++ +
Sbjct: 110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW 160
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 26/158 (16%)
Query: 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS 103
AM+LD + EG +++D G G+G A+LA VG +GKV E + + A N+
Sbjct: 105 AMMLD-----VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTK 159
Query: 104 -GNPEFVKDGRIKFVLGDGRKGYLDEAPYDII---------HVGGSIEDIPEGVRFGHIA 153
G E R+ + D +G+ DE D + ++ E + G RF +
Sbjct: 160 WGLIE-----RVTIKVRDISEGF-DEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVC 213
Query: 154 --SPKVESVMRSIDRRRFIERPI---MNNPYWDIPQSL 186
+ +V+ ++ + FI + + PY +P+ L
Sbjct: 214 PTTNQVQETLKKLQELPFIRIEVWESLFRPYKPVPERL 251
>pdb|2IPX|A Chain A, Human Fibrillarin
Length = 233
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 208 YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 243
++KPGAKVL +G+ SG + ++ +VGP G VYAVE
Sbjct: 74 HIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVE 109
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 392 YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 427
++KPGAKVL +G+ SG + ++ +VGP G VYAVE
Sbjct: 74 HIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVE 109
>pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|C Chain C, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|E Chain E, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|G Chain G, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|I Chain I, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|K Chain K, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|M Chain M, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|O Chain O, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
Length = 254
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 7/69 (10%)
Query: 201 ALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLV---AQANKSMH 257
AL+ L +L+PG KVLD+G+GSG L A A +G GK V+ I+ +V A+AN +
Sbjct: 110 ALKALARHLRPGDKVLDLGTGSGVL-AIAAEKLG--GKALGVD-IDPMVLPQAEANAKRN 165
Query: 258 TYYPNLMEG 266
P +EG
Sbjct: 166 GVRPRFLEG 174
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 7/69 (10%)
Query: 385 ALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLV---AQANKSMH 441
AL+ L +L+PG KVLD+G+GSG L A A +G GK V+ I+ +V A+AN +
Sbjct: 110 ALKALARHLRPGDKVLDLGTGSGVL-AIAAEKLG--GKALGVD-IDPMVLPQAEANAKRN 165
Query: 442 TYYPNLMEG 450
P +EG
Sbjct: 166 GVRPRFLEG 174
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 45 MVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNV 101
+ L L+ L G KVLD+G+G+G A+ A +G GK +G++ P ++ +A N
Sbjct: 109 LALKALARHLRPGDKVLDLGTGSGVL-AIAAEKLG--GKALGVDIDPMVLPQAEANA 162
>pdb|1UFK|A Chain A, Crystal Structure Of Tt0836
pdb|2NXE|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXE|B Chain B, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXJ|A Chain A, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXJ|B Chain B, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXN|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With Ribosomal Protein L11
pdb|2NXC|A Chain A, Apo-Form Of T. Thermophilus Ribosomal Protein L11
Methyltransferase (Prma)
pdb|3CJQ|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|D Chain D, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|G Chain G, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJR|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Ribosomal Protein L11 (k39a) And Inhibitor
Sinefungin.
pdb|3EGV|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Trimethylated Ribosomal Protein L11
pdb|2ZBP|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Methionine
pdb|2ZBQ|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Homocysteine
pdb|2ZBR|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-adenosyl-ornithine
Length = 254
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 7/69 (10%)
Query: 201 ALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLV---AQANKSMH 257
AL+ L +L+PG KVLD+G+GSG L A A +G GK V+ I+ +V A+AN +
Sbjct: 110 ALKALARHLRPGDKVLDLGTGSGVL-AIAAEKLG--GKALGVD-IDPMVLPQAEANAKRN 165
Query: 258 TYYPNLMEG 266
P +EG
Sbjct: 166 GVRPRFLEG 174
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 7/69 (10%)
Query: 385 ALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLV---AQANKSMH 441
AL+ L +L+PG KVLD+G+GSG L A A +G GK V+ I+ +V A+AN +
Sbjct: 110 ALKALARHLRPGDKVLDLGTGSGVL-AIAAEKLG--GKALGVD-IDPMVLPQAEANAKRN 165
Query: 442 TYYPNLMEG 450
P +EG
Sbjct: 166 GVRPRFLEG 174
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 45 MVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNV 101
+ L L+ L G KVLD+G+G+G A+ A +G GK +G++ P ++ +A N
Sbjct: 109 LALKALARHLRPGDKVLDLGTGSGVL-AIAAEKLG--GKALGVDIDPMVLPQAEANA 162
>pdb|2PWY|A Chain A, Crystal Structure Of A M1a58 Trna Methyltransferase
pdb|2PWY|B Chain B, Crystal Structure Of A M1a58 Trna Methyltransferase
Length = 258
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 199 AQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHT 258
A A+ L D L PG +VL+ G+GSG LT +A VG G V + E +AQA +++
Sbjct: 85 ASAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRA 143
Query: 259 YY 260
++
Sbjct: 144 FW 145
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 383 AQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHT 442
A A+ L D L PG +VL+ G+GSG LT +A VG G V + E +AQA +++
Sbjct: 85 ASAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRA 143
Query: 443 YY 444
++
Sbjct: 144 FW 145
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 112
+L G +VL+ G+G+G T LA VG+ G V E P + +A NV + F +
Sbjct: 93 DLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRA----FWQVE 148
Query: 113 RIKFVLGDGRKGYLDEAPYD 132
++F LG + L+EA YD
Sbjct: 149 NVRFHLGKLEEAELEEAAYD 168
>pdb|2PT7|A Chain A, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|B Chain B, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|C Chain C, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|D Chain D, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|E Chain E, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|F Chain F, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
Length = 330
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 369 WYHPNGFYDDLDVHAQALEILKDYLKPGAKVLDI-GSGSGYLTACMAHM--VGPTGKVYA 425
++ GFY+ LD QA+ +KD + G V+ G+GSG T + M + ++ +
Sbjct: 144 FFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIIS 203
Query: 426 VEHIEDLVAQANKSMHTYYPNLMEGGRVQFTEMAEKVMQLR 466
+E E++V + H Y L GG + + + +++R
Sbjct: 204 IEDTEEIVFK----HHKNYTQLFFGGNITSADCLKSCLRMR 240
>pdb|3TMA|A Chain A, Crystal Structure Of Trmn From Thermus Thermophilus
Length = 354
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 169 FIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTAC 228
ERP+ P++ GS+ V AQAL L D +PG +VLD +GSG +
Sbjct: 169 LTERPLSRR----FPKAALRGSLTP---VLAQALLRLADA-RPGMRVLDPFTGSGTIALE 220
Query: 229 MAHMVGPTGKVYAVEHIEDLVAQANKS 255
A +GPT VYA + E + A ++
Sbjct: 221 AASTLGPTSPVYAGDLDEKRLGLAREA 247
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 381 VHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKS 439
V AQAL L D +PG +VLD +GSG + A +GPT VYA + E + A ++
Sbjct: 190 VLAQALLRLADA-RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREA 247
>pdb|1G6O|A Chain A, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1G6O|B Chain B, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1NLY|A Chain A, Crystal Structure Of The Traffic Atpase Of The
Helicobacter Pylori Type Iv Secretion System In Complex
With Atpgammas
pdb|1NLY|B Chain B, Crystal Structure Of The Traffic Atpase Of The
Helicobacter Pylori Type Iv Secretion System In Complex
With Atpgammas
pdb|1NLZ|A Chain A, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|B Chain B, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|C Chain C, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|D Chain D, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|E Chain E, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|F Chain F, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1OPX|A Chain A, Crystal Structure Of The Traffic Atpase (Hp0525) Of The
Helicobacter Pylori Type Iv Secretion System Bound By
Sulfate
pdb|1OPX|B Chain B, Crystal Structure Of The Traffic Atpase (Hp0525) Of The
Helicobacter Pylori Type Iv Secretion System Bound By
Sulfate
Length = 330
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 369 WYHPNGFYDDLDVHAQALEILKDYLKPGAKVLDI-GSGSGYLT--ACMAHMVGPTGKVYA 425
++ GFY+ LD QA+ +KD + G V+ G+GSG T + + ++ +
Sbjct: 144 FFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIXEFIPKEERIIS 203
Query: 426 VEHIEDLVAQANKSMHTYYPNLMEGGRVQFTEMAEKVMQLR 466
+E E++V + +K+ Y L GG + + + ++ R
Sbjct: 204 IEDTEEIVFKHHKN----YTQLFFGGNITSADCLKSCLRXR 240
>pdb|1NKV|A Chain A, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
pdb|1NKV|B Chain B, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
pdb|1NKV|C Chain C, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
Length = 256
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 44/108 (40%), Gaps = 13/108 (12%)
Query: 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRV 269
KPG ++LD+GSGSG A G TG ++ AQA + L RV
Sbjct: 35 KPGTRILDLGSGSGEXLCTWARDHGITGT--GIDXSSLFTAQAKRRAE----ELGVSERV 88
Query: 270 QFVDGDGREGHAAEGPYDV------IYVGGAVHHYPFKLMDQLKPGGV 311
F+ D G+ A DV ++ G L LKPGG+
Sbjct: 89 HFIHNDA-AGYVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGI 135
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 357 LPALASVEEQKYWYHPNGFYDDLDVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHM 416
+P + ++ E ++ H N F ++ +A +L+ KPG ++LD+GSGSG A
Sbjct: 3 IPRIFTISESEHRIH-NPFTEE--KYATLGRVLR--XKPGTRILDLGSGSGEXLCTWARD 57
Query: 417 VGPTGKVYAVEHIEDLVAQANK 438
G TG ++ AQA +
Sbjct: 58 HGITGT--GIDXSSLFTAQAKR 77
>pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Target Btr309
Length = 257
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 16/96 (16%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 112
ELT+ K+ DIG G G T LA V G++ GI+ P ++ N + N
Sbjct: 43 ELTDDAKIADIGCGTGGQTLFLADYV--KGQITGIDLFPDFIEIFNENAVKANCA----D 96
Query: 113 RIKFVLGDGRKGYLDEAPY-----DIIHVGGSIEDI 143
R+K G G +D P+ D+I G+I +I
Sbjct: 97 RVK-----GITGSMDNLPFQNEELDLIWSEGAIYNI 127
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 18/133 (13%)
Query: 194 SPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQAN 253
SP+ +A+ + + L AK+ DIG G+G T +A V G++ ++ D + N
Sbjct: 30 SPEATRKAVSFINE-LTDDAKIADIGCGTGGQTLFLADYV--KGQITGIDLFPDFIEIFN 86
Query: 254 KSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKL-MDQ----LKP 308
+ + N + RV+ + G D+I+ GA+++ F+ M++ LK
Sbjct: 87 E--NAVKANCAD--RVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKK 142
Query: 309 GGVM------WFT 315
GG + WFT
Sbjct: 143 GGFIAVSEASWFT 155
>pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SVZ|B Chain B, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SXJ|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3SXJ|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
Length = 263
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 16/96 (16%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 112
ELT+ K+ DIG G G T LA V G++ GI+ P ++ N + N
Sbjct: 49 ELTDDAKIADIGCGTGGQTLFLADYV--KGQITGIDLFPDFIEIFNENAVKANCA----D 102
Query: 113 RIKFVLGDGRKGYLDEAPY-----DIIHVGGSIEDI 143
R+K G G +D P+ D+I G+I +I
Sbjct: 103 RVK-----GITGSMDNLPFQNEELDLIWSEGAIYNI 133
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 18/133 (13%)
Query: 194 SPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQAN 253
SP+ +A+ + + L AK+ DIG G+G T +A V G++ ++ D + N
Sbjct: 36 SPEATRKAVSFINE-LTDDAKIADIGCGTGGQTLFLADYV--KGQITGIDLFPDFIEIFN 92
Query: 254 KSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKL-MDQ----LKP 308
+ + N + RV+ + G D+I+ GA+++ F+ M++ LK
Sbjct: 93 E--NAVKANCAD--RVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKK 148
Query: 309 GGVM------WFT 315
GG + WFT
Sbjct: 149 GGFIAVSEASWFT 161
>pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
Length = 253
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 197 VHAQALEILKDY--LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQA 252
VH + ++ Y + PG +++ G GSG LT +A++VGP G+V + E ED A
Sbjct: 77 VHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLA 134
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 381 VHAQALEILKDY--LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQA 436
VH + ++ Y + PG +++ G GSG LT +A++VGP G+V + E ED A
Sbjct: 77 VHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLA 134
>pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Methionine
Length = 255
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 197 VHAQALEILKDY--LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQA 252
VH + ++ Y + PG +++ G GSG LT +A++VGP G+V + E ED A
Sbjct: 77 VHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLA 134
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 381 VHAQALEILKDY--LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQA 436
VH + ++ Y + PG +++ G GSG LT +A++VGP G+V + E ED A
Sbjct: 77 VHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLA 134
>pdb|3BKX|A Chain A, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
pdb|3BKX|B Chain B, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
Length = 275
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 243
+KPG K+L+IG G G L+A +A VG +G V ++
Sbjct: 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGID 75
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 427
+KPG K+L+IG G G L+A +A VG +G V ++
Sbjct: 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGID 75
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIE 88
++ G+K+L+IG G G +A+LA VG +G V GI+
Sbjct: 40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGID 75
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 17/128 (13%)
Query: 204 ILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNL 263
+L Y K KVLD+ G G + + +V V+ ED + +A + + N
Sbjct: 31 LLXKYXKKRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDXIRKAREYAKSRESN- 86
Query: 264 MEGGRVQFVDGDGREGHAAEGPYD-VIYVGGAVHHYPFKL-------MDQLKPGGVMWFT 315
V+F+ GD R+ + +D VI++ VH P +L LKP G
Sbjct: 87 -----VEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIXY 141
Query: 316 IGNAEEML 323
+ E+L
Sbjct: 142 FTDLRELL 149
>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|B Chain B, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|C Chain C, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|D Chain D, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
Length = 260
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 194 SPKVHAQALEILK----DYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLV 249
+ ++HA+ ++ K LK +VLD+ +G G++ A V KV A + ED++
Sbjct: 16 TSQIHAKGSDLAKLXQIAALKGNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDIL 72
Query: 250 AQANKSMHTYYPNLMEGG---RVQFVDGDGREGHAAEGPYDVIYVGGAVHHYP 299
A +EG +V++V GD + + + ++ A HH+P
Sbjct: 73 KVARA--------FIEGNGHQQVEYVQGDAEQXPFTDERFHIVTCRIAAHHFP 117
>pdb|1YB2|A Chain A, Structure Of A Putative Methyltransferase From
Thermoplasma Acidophilum
Length = 275
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 8/124 (6%)
Query: 204 ILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNL 263
I++ L+PG +L++G GSG ++ + + + G + VE ED + +A ++ +Y
Sbjct: 103 IMRCGLRPGXDILEVGVGSGNXSSYILYALNGKGTLTVVERDEDNLKKAXDNLSEFY--- 159
Query: 264 MEGGRVQFVDGDGREGHAAEGPYDVIY--VGGAVHHYPFKLMDQLKPGGVMWFTIGNAEE 321
+ G V+ D + ++ YD + + +H K+ KPG V F + N ++
Sbjct: 160 -DIGNVRTSRSDIAD-FISDQXYDAVIADIPDPWNHVQ-KIASXXKPGSVATFYLPNFDQ 216
Query: 322 MLKN 325
K
Sbjct: 217 SEKT 220
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%)
Query: 388 ILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYY 444
I++ L+PG +L++G GSG ++ + + + G + VE ED + +A ++ +Y
Sbjct: 103 IMRCGLRPGXDILEVGVGSGNXSSYILYALNGKGTLTVVERDEDNLKKAXDNLSEFY 159
>pdb|4AX8|A Chain A, Medium Resolution Structure Of The Bifunctional Kinase-
Methyltransferase Wbdd
Length = 569
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 20/103 (19%)
Query: 48 DDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISG--- 104
D+LS L VLD+G G+F+ LA K ++GI+ Q+ NV
Sbjct: 58 DNLSRALGRPLNVLDLGCAQGFFSLSLA---SKGATIVGID-----FQQENINVCRALAE 109
Query: 105 -NPEFVKD---GRIKFVLGDGRKGYLDEAP-----YDIIHVGG 138
NP+F + GRI+ V+ +G D A + I+H+ G
Sbjct: 110 ENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFHHIVHLHG 152
>pdb|4AZS|A Chain A, High Resolution (2.2 A) Crystal Structure Of Wbdd.
pdb|4AZT|A Chain A, Co-Crystal Structure Of Wbdd And Kinase Inhibitor
Ly294002.
pdb|4AZV|A Chain A, Co-crystal Structure Of Wbdd And Kinase Inhibitor
Gw435821x
Length = 569
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 20/103 (19%)
Query: 48 DDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISG--- 104
D+LS L VLD+G G+F+ LA K ++GI+ Q+ NV
Sbjct: 58 DNLSRALGRPLNVLDLGCAQGFFSLSLA---SKGATIVGID-----FQQENINVCRALAE 109
Query: 105 -NPEFVKD---GRIKFVLGDGRKGYLDEAP-----YDIIHVGG 138
NP+F + GRI+ V+ +G D A + I+H+ G
Sbjct: 110 ENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFHHIVHLHG 152
>pdb|4AZW|A Chain A, Crystal Structure Of Monomeric Wbdd
Length = 471
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 20/103 (19%)
Query: 48 DDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISG--- 104
D+LS L VLD+G G+F+ LA K ++GI+ Q+ NV
Sbjct: 58 DNLSRALGRPLNVLDLGCAQGFFSLSLA---SKGATIVGID-----FQQENINVCRALAE 109
Query: 105 -NPEFVKD---GRIKFVLGDGRKGYLDEAP-----YDIIHVGG 138
NP+F + GRI+ V+ +G D A + I+H+ G
Sbjct: 110 ENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFHHIVHLHG 152
>pdb|3EEY|A Chain A, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|B Chain B, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|C Chain C, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|D Chain D, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|E Chain E, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|F Chain F, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|G Chain G, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|H Chain H, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|I Chain I, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|J Chain J, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
Length = 197
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 200 QALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTY 259
Q+ + +K ++K G V+D G+G TA +A +VG G+V+ + + +A K +
Sbjct: 11 QSHDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDL 70
Query: 260 YPNLMEGGRVQFVDGDGREGHAAEGPY 286
NL++ RV + ++GH Y
Sbjct: 71 --NLID--RVTLI----KDGHQNMDKY 89
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 384 QALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSM 440
Q+ + +K ++K G V+D G+G TA +A +VG G+V+ + + +A K +
Sbjct: 11 QSHDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKL 67
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 56 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGN----PEFVKD 111
EG V+D GNG TA LA VG+ G+V G + + + T + N +KD
Sbjct: 22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKD 81
Query: 112 G 112
G
Sbjct: 82 G 82
>pdb|2B25|A Chain A, Human Putative Trna(1-Methyladenosine)methyltransferase
pdb|2B25|B Chain B, Human Putative Trna(1-Methyladenosine)methyltransferase
Length = 336
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 146 GVRFGHIASPKVESVMRS-IDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEI 204
V FG I ++RS ++ + RP + D + G+ ++ PK L +
Sbjct: 45 AVPFGKIVGKFPGQILRSSFGKQYMLRRPALE----DYVVLMKRGTAITFPKDINMILSM 100
Query: 205 LKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIED 247
+ + PG VL+ GSGSG ++ ++ VG G+V + E +D
Sbjct: 101 MD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKD 141
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 17/95 (17%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 112
++ G VL+ GSG+G + L+ VG G+VI E V++ H++ N + +D
Sbjct: 102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFE-----VRKDHHDLAKKNYKHWRDS 156
Query: 113 RIKFVLGDGRKGYLDEAP--YDIIH--VGGSIEDI 143
+ +++E P D IH + G+ EDI
Sbjct: 157 --------WKLSHVEEWPDNVDFIHKDISGATEDI 183
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIED 431
+ PG VL+ GSGSG ++ ++ VG G+V + E +D
Sbjct: 103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKD 141
>pdb|3E7P|A Chain A, Crystal Structure Of Of Putative Methyltransferase From
Bacteroides Vulgatus Atcc 8482
Length = 270
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 52 EELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKD 111
+ LT + D+G G G T +LA V GK+ GI+ P ++R N N +
Sbjct: 43 DNLTNKSLIADLGCGTGGQTMILAQHV--PGKITGIDFFPGFIERFNKNAEKLNLQ---- 96
Query: 112 GRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDI 143
R+K ++G ++ D+I G+I +I
Sbjct: 97 NRVKGIVGSMDDLSFEKDSLDLIWSEGAIYNI 128
>pdb|2ZUL|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533) In Complex With
Cofactor S-Adenosyl-L-Methionine
pdb|2ZWV|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533)
Length = 375
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 25/132 (18%)
Query: 202 LEILKDYLKP----GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMH 257
LE L++ L P G +VLD+G+G G LT +A M V +ED +A
Sbjct: 220 LEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA------EVVGVEDDLASVLSLQK 273
Query: 258 TYYPNLMEGGRVQFVDGDGREGHAAEGPYDVI------YVGGAV-----HHYPFKLMDQL 306
N + + Q + D E E +D+I +VGGAV + +L
Sbjct: 274 GLEANAL---KAQALHSDVDEALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARL 330
Query: 307 KPGGVMWFTIGN 318
+PGGV +F + N
Sbjct: 331 RPGGV-FFLVSN 341
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 345 EWEEEFMGRLWRLPALASVEEQKYWYHPNGFYDDLDVHAQAL---EILKDYLKP----GA 397
E E + LWR + + + ++H G + V +L E L++ L P G
Sbjct: 176 EKEAPPLPSLWRAFSARILGAEYTFHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGR 235
Query: 398 KVLDIGSGSGYLTACMAHM 416
+VLD+G+G G LT +A M
Sbjct: 236 QVLDLGAGYGALTLPLARM 254
>pdb|3DMF|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet
pdb|3DMG|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adohcy
pdb|3DMH|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet And Guanosine
Length = 381
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 25/132 (18%)
Query: 202 LEILKDYLKP----GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMH 257
LE L++ L P G +VLD+G+G G LT +A M V +ED +A
Sbjct: 220 LEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA------EVVGVEDDLASVLSLQK 273
Query: 258 TYYPNLMEGGRVQFVDGDGREGHAAEGPYDVI------YVGGAV-----HHYPFKLMDQL 306
N + + Q + D E E +D+I +VGGAV + +L
Sbjct: 274 GLEANAL---KAQALHSDVDEALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARL 330
Query: 307 KPGGVMWFTIGN 318
+PGGV +F + N
Sbjct: 331 RPGGV-FFLVSN 341
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 345 EWEEEFMGRLWRLPALASVEEQKYWYHPNGFYDDLDVHAQAL---EILKDYLKP----GA 397
E E + LWR + + + ++H G + V +L E L++ L P G
Sbjct: 176 EKEAPPLPSLWRAFSARILGAEYTFHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGR 235
Query: 398 KVLDIGSGSGYLTACMAHM 416
+VLD+G+G G LT +A M
Sbjct: 236 QVLDLGAGYGALTLPLARM 254
>pdb|3T7R|A Chain A, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7R|B Chain B, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|A Chain A, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|B Chain B, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|C Chain C, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|D Chain D, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|A Chain A, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|B Chain B, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|C Chain C, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|D Chain D, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
Length = 268
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 52 EELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKD 111
+ LT + D+G G G T +LA V GK+ GI+ P ++R N N +
Sbjct: 48 DNLTNKSLIADLGCGTGGQTMILAQHV--PGKITGIDFFPGFIERFNKNAEKLNLQ---- 101
Query: 112 GRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDI 143
R+K ++G ++ D+I G+I +I
Sbjct: 102 NRVKGIVGSMDDLSFEKDSLDLIWSEGAIYNI 133
>pdb|1T43|A Chain A, Crystal Structure Analysis Of E.Coli Protein
(N5)-Glutamine Methyltransferase (Hemk)
Length = 277
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 179 YWDIPQSLGFGSVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGK 238
+W +P + +++ P + L + ++LD+G+G+G + +A P +
Sbjct: 77 FWSLPLFVSPATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASE-RPDCE 135
Query: 239 VYAVEHIEDLVAQANKS 255
+ AV+ + D V+ A ++
Sbjct: 136 IIAVDRMPDAVSLAQRN 152
>pdb|2B3T|A Chain A, Molecular Basis For Bacterial Class 1 Release Factor
Methylation By Prmc
Length = 276
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 179 YWDIPQSLGFGSVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGK 238
+W +P + +++ P + L + ++LD+G+G+G + +A P +
Sbjct: 77 FWSLPLFVSPATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASE-RPDCE 135
Query: 239 VYAVEHIEDLVAQANKS 255
+ AV+ + D V+ A ++
Sbjct: 136 IIAVDRMPDAVSLAQRN 152
>pdb|4DF3|A Chain A, Crystal Structure Of Aeropyrum Pernix Fibrillarin In
Complex With Natively Bound S-adenosyl-l-methionine At
1.7a
pdb|4DF3|B Chain B, Crystal Structure Of Aeropyrum Pernix Fibrillarin In
Complex With Natively Bound S-adenosyl-l-methionine At
1.7a
Length = 233
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 243
+K G ++L +G SG + M+ ++GP G++Y VE
Sbjct: 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVE 109
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 427
+K G ++L +G SG + M+ ++GP G++Y VE
Sbjct: 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVE 109
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 35 NTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLV 94
N SK A++ + + EG ++L +G +G + ++ +G G++ G+E P
Sbjct: 56 NAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAP--- 112
Query: 95 QRATHNVISGNPEFVKDGRIKF-VLGDGR 122
R ++++ V+D R F +LGD R
Sbjct: 113 -RVMRDLLT----VVRDRRNIFPILGDAR 136
>pdb|4FR0|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With Sam
pdb|4FS8|A Chain A, The Structure Of An As(Iii) S-Adenosylmethionine
Methyltransferase: Insights Into The Mechanism Of
Arsenic Biotransformation
pdb|4FSD|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With As(Iii)
Length = 383
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 22/100 (22%)
Query: 24 YGAHMQAPFQDNTKFSKFQQAM------VLDDLSEELTE----------------GKKVL 61
YG +Q+ T K A+ +L D+++E+ E G VL
Sbjct: 29 YGKTLQSSADLKTSACKLAAAVPESHRKILADIADEVLEKFYGCGSTLPADGSLEGATVL 88
Query: 62 DIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNV 101
D+G G G L + VG+ GKVIG++ + ++ A V
Sbjct: 89 DLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYV 128
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 212 GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 254
GA VLD+G G+G + +VG GKV V+ +++ + A K
Sbjct: 84 GATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARK 126
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 396 GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
GA VLD+G G+G + +VG GKV V+ +++ + A K
Sbjct: 84 GATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARK 126
>pdb|3UJ7|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ7|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ8|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sinefungin And Po4
pdb|3UJ9|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphocholine
pdb|3UJA|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphoethanolamine
pdb|3UJB|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|3UJB|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|4FGZ|A Chain A, Crystal Structure Of Phosphoethanolamine Methyltransferase
From Plasmodium Falciparum In Complex With Amodiaquine
pdb|4FGZ|B Chain B, Crystal Structure Of Phosphoethanolamine Methyltransferase
From Plasmodium Falciparum In Complex With Amodiaquine
Length = 266
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 18/122 (14%)
Query: 203 EILKDY-LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYP 261
+IL D L +KVLDIGSG G CM + ++ ++V AN+ +
Sbjct: 46 KILSDIELNENSKVLDIGSGLG--GGCMYINEKYGAHTHGIDICSNIVNMANERVSG--- 100
Query: 262 NLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPF--------KLMDQLKPGGVMW 313
++ F D E +D+IY A+ H K LKP G +
Sbjct: 101 ----NNKIIFEANDILTKEFPENNFDLIYSRDAILHLSLENKNKLFQKCYKWLKPTGTLL 156
Query: 314 FT 315
T
Sbjct: 157 IT 158
>pdb|3UJD|A Chain A, Phosphoethanolamine Methyltransferase Mutant (Y19f) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 18/122 (14%)
Query: 203 EILKDY-LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYP 261
+IL D L +KVLDIGSG G CM + ++ ++V AN+ +
Sbjct: 46 KILSDIELNENSKVLDIGSGLG--GGCMYINEKYGAHTHGIDICSNIVNMANERVSG--- 100
Query: 262 NLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPF--------KLMDQLKPGGVMW 313
++ F D E +D+IY A+ H K LKP G +
Sbjct: 101 ----NNKIIFEANDILTKEFPENNFDLIYSRDAILHLSLENKNKLFQKCYKWLKPTGTLL 156
Query: 314 FT 315
T
Sbjct: 157 IT 158
>pdb|2PJD|A Chain A, Crystal Structure Of 16s Rrna Methyltransferase Rsmc
Length = 343
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 31/152 (20%)
Query: 287 DVIYVGGAVHHYP-------FKLMDQLK--PGGVMWFTIGNAEEMLKNNRRTESNLAVVK 337
DV ++++P F+L + L P G F +G +++ + ++ A +
Sbjct: 73 DVADCDTLIYYWPKNKPEAQFQLXNLLSLLPVGTDIFVVGENRSGVRSAEQXLADYAPL- 131
Query: 338 AHKKDHGEWEEEFMGRLWRLPALASVEEQKYW--YHPNGFY----------DDLDVHAQA 385
+K D + GRL + P + +K+W Y +G D LDV +Q
Sbjct: 132 -NKVDSARRCGLYFGRLEKQPVF---DAEKFWGEYSVDGLTVKTLPGVFSRDGLDVGSQ- 186
Query: 386 LEILKDYLKP--GAKVLDIGSGSGYLTACMAH 415
+L L P KVLD+G G+G L+ A
Sbjct: 187 --LLLSTLTPHTKGKVLDVGCGAGVLSVAFAR 216
>pdb|2JJQ|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
(Uracil-54, C5)-Methyltransferase In Complex With
S-Adenosyl-L- Homocysteine
Length = 425
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 19 ITNIGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLA 75
+ ++ Y H + FQ N+ QA+ L EL EG+K+LD+ SG G F LA
Sbjct: 258 LDDVDYLIHPNSFFQTNS-----YQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLA 309
>pdb|2VS1|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
(Uracil-54, C5)-Methyltransferase In Complex With
S-Adenosyl-L- Homocysteine
Length = 425
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 19 ITNIGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLA 75
+ ++ Y H + FQ N+ QA+ L EL EG+K+LD+ SG G F LA
Sbjct: 258 LDDVDYLIHPNSFFQTNS-----YQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLA 309
>pdb|2NNW|B Chain B, Alternative Conformations Of Nop56/58-fibrillarin Complex
And Implication For Induced-fit Assenly Of Box C/d Rnps
pdb|2NNW|D Chain D, Alternative Conformations Of Nop56/58-fibrillarin Complex
And Implication For Induced-fit Assenly Of Box C/d Rnps
pdb|3NMU|F Chain F, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NMU|J Chain J, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NVK|I Chain I, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
pdb|3NVK|J Chain J, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
pdb|3NVM|B Chain B, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
Length = 234
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 196 KVHAQALEILKDY-LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 243
K+ A + LK++ +KPG VL +G SG + ++ +VG GK+Y +E
Sbjct: 64 KLGAAIVNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIE 112
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 389 LKDY-LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 427
LK++ +KPG VL +G SG + ++ +VG GK+Y +E
Sbjct: 73 LKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIE 112
>pdb|1PRY|A Chain A, Structure Determination Of Fibrillarin Homologue From
Hyperthermophilic Archaeon Pyrococcus Furiosus
(Pfu-65527)
Length = 227
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 196 KVHAQALEILKDY-LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 243
K+ A + LK++ +KPG VL +G SG + ++ +VG GK+Y +E
Sbjct: 57 KLGAAIVNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIE 105
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 389 LKDY-LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 427
LK++ +KPG VL +G SG + ++ +VG GK+Y +E
Sbjct: 66 LKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIE 105
>pdb|4DZR|A Chain A, The Crystal Structure Of Protein-(Glutamine-N5)
Methyltransferase (Release Factor-Specific) From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius
Dsm 446
Length = 215
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 14/113 (12%)
Query: 200 QALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTY 259
+A+ LK G +V+D+G+GSG + +A + P V AV+ D +A A ++ +
Sbjct: 20 EAIRFLK-RXPSGTRVIDVGTGSGCIAVSIA-LACPGVSVTAVDLSXDALAVARRNAERF 77
Query: 260 YPNLMEGGRVQFVDGDGRE---GHAAEG-PYDVIYVGGAVHHYPFKLMDQLKP 308
G V + DG E A G P+ I + P +DQL+P
Sbjct: 78 ------GAVVDWAAADGIEWLIERAERGRPWHAIVSNPP--YIPTGEIDQLEP 122
>pdb|1G8A|A Chain A, Pyrococcus Horikoshii Fibrillarin Pre-Rrna Processing
Protein
Length = 227
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 196 KVHAQALEILKDY-LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 243
K+ A + LK++ +KPG VL +G SG + ++ +VG GK++ +E
Sbjct: 57 KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIE 105
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 364 EEQKYWYHPNGFYDDLDVHAQALEILKDY-LKPGAKVLDIGSGSGYLTACMAHMVGPTGK 422
EE + W +PN + A + LK++ +KPG VL +G SG + ++ +VG GK
Sbjct: 46 EEYRIW-NPN----RSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGK 100
Query: 423 VYAVE 427
++ +E
Sbjct: 101 IFGIE 105
>pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212 In Complex
With S-Adenosyl-L- Methionine
Length = 464
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 364 EEQKYWYHP---NGFYDDLDVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPT 420
EE + HP G Y + AQA+ +L D KPG +VLD+ + G T +A +G
Sbjct: 68 EEARPGPHPFFYAGLYYIQEPSAQAVGVLLDP-KPGERVLDLAAAPGGKTTHLAARMGGK 126
Query: 421 GKVYAVE 427
G + A E
Sbjct: 127 GLLLANE 133
>pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6U|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6V|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
pdb|3M6V|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
Length = 464
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 364 EEQKYWYHP---NGFYDDLDVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPT 420
EE + HP G Y + AQA+ +L D KPG +VLD+ + G T +A +G
Sbjct: 68 EEARPGPHPFFYAGLYYIQEPSAQAVGVLLDP-KPGERVLDLAAAPGGKTTHLAARMGGK 126
Query: 421 GKVYAVE 427
G + A E
Sbjct: 127 GLLLANE 133
>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S.
Cerevisiae)
Length = 376
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 371 HPNGFYDDLDVHAQALEILKDYLK-PGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHI 429
H D + A L IL+++ G VLD+G+G+G L+ A +VYAVE
Sbjct: 58 HEEMIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQ--AGARRVYAVE-- 113
Query: 430 EDLVAQANKSMHTYYPNLMEGGRVQFTEMAEKVMQLRVHMMSFTLEEQSIIILSSFMG 487
+ Q + + V+F + ++V L + + L EQ I+S +MG
Sbjct: 114 ASAIWQQAREV------------VRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMG 159
>pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212
Length = 464
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 364 EEQKYWYHP---NGFYDDLDVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPT 420
EE + HP G Y + AQA+ +L D KPG +VLD+ + G T +A G
Sbjct: 68 EEARPGPHPFFYAGLYYIQEPSAQAVGVLLDP-KPGERVLDLAAAPGGKTTHLAARXGGK 126
Query: 421 GKVYAVE 427
G + A E
Sbjct: 127 GLLLANE 133
>pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
Length = 450
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 175 MNNPY-WDIPQSLGFGSVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMV 233
+ PY +D + G ++ + A A +L KPG V+D+ + G T +A ++
Sbjct: 224 IKGPYNFDTSSAFNEGKIIVQEEASAVASIVLDP--KPGETVVDLAAAPGGKTTHLAELM 281
Query: 234 GPTGKVYAVE 243
GK+YA +
Sbjct: 282 KNKGKIYAFD 291
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 394 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 427
KPG V+D+ + G T +A ++ GK+YA +
Sbjct: 258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFD 291
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 17/112 (15%)
Query: 366 QKYWYHPNG--FYDDLDVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKV 423
+ YW +G LD++ I+ +YL+ ++LDIG GSG ++ +A K
Sbjct: 3 ESYWEKVSGKNIPSSLDLYP----IIHNYLQEDDEILDIGCGSGKISLELA------SKG 52
Query: 424 YAVEHIE---DLVAQANKSMHTYYPNLMEGGRVQFTEMAEKVMQLRVHMMSF 472
Y+V I+ + + A + + N GG+ +F E L H SF
Sbjct: 53 YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFK--VENASSLSFHDSSF 102
>pdb|4FU0|A Chain A, Crystal Structure Of Vang D-Ala:d-Ser Ligase From
Enterococcus Faecalis
pdb|4FU0|B Chain B, Crystal Structure Of Vang D-Ala:d-Ser Ligase From
Enterococcus Faecalis
Length = 357
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 439 SMHTYYPNLMEGGRVQFTEMAEKVMQLRVHM 469
+ H+ YPN+M+G + F++M +K++ L V +
Sbjct: 320 TSHSRYPNMMKGIGLSFSQMLDKLIGLYVEL 350
>pdb|2I22|A Chain A, Crystal Structure Of Escherichia Coli Phosphoheptose
Isomerase In Complex With Reaction Substrate
Sedoheptulose 7-Phosphate
pdb|2I22|B Chain B, Crystal Structure Of Escherichia Coli Phosphoheptose
Isomerase In Complex With Reaction Substrate
Sedoheptulose 7-Phosphate
pdb|2I22|C Chain C, Crystal Structure Of Escherichia Coli Phosphoheptose
Isomerase In Complex With Reaction Substrate
Sedoheptulose 7-Phosphate
pdb|2I22|D Chain D, Crystal Structure Of Escherichia Coli Phosphoheptose
Isomerase In Complex With Reaction Substrate
Sedoheptulose 7-Phosphate
pdb|2I2W|A Chain A, Crystal Structure Of Escherichia Coli Phosphoheptose
Isomerase
pdb|2I2W|B Chain B, Crystal Structure Of Escherichia Coli Phosphoheptose
Isomerase
pdb|2I2W|C Chain C, Crystal Structure Of Escherichia Coli Phosphoheptose
Isomerase
pdb|2I2W|D Chain D, Crystal Structure Of Escherichia Coli Phosphoheptose
Isomerase
Length = 212
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 372 PNGFYDDLDVHA--QALEILKDYLKPGAKVLDIGSGSGYLTA 411
N DD ++HA +A +L D K G KVL G+G + A
Sbjct: 38 ANFLKDDANIHAIQRAAVLLADSFKAGGKVLSCGNGGSHCDA 79
>pdb|4GVF|A Chain A, Crystal Structure Of Salmonella Typhimurium Family 3
Glycoside Hydrolase (nagz) Bound To Glcnac
pdb|4GVF|B Chain B, Crystal Structure Of Salmonella Typhimurium Family 3
Glycoside Hydrolase (nagz) Bound To Glcnac
pdb|4GVG|A Chain A, Crystal Structure Of Salmonella Typhimurium Family 3
Glycoside Hydrolase (Nagz)
pdb|4GVG|B Chain B, Crystal Structure Of Salmonella Typhimurium Family 3
Glycoside Hydrolase (Nagz)
pdb|4GVH|A Chain A, Crystal Structure Of Salmonella Typhimurium Family 3
Glycoside Hydrolase (Nagz) Covalently Bound To
5-Fluoro-Glcnac.
pdb|4GVH|B Chain B, Crystal Structure Of Salmonella Typhimurium Family 3
Glycoside Hydrolase (Nagz) Covalently Bound To
5-Fluoro-Glcnac
Length = 349
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 14/77 (18%)
Query: 152 IASPKVESVM------RSIDRRRFIERPIMNNPYW---DIPQSLGFGSVMSSPKVHAQAL 202
I+ K++++M R+ID RP +PYW + Q LGF V+ S + +
Sbjct: 201 ISENKLDAIMPAHVIYRAID-----PRPASGSPYWLKTVLRQELGFDGVIFSDDLSMEGA 255
Query: 203 EILKDYLKPGAKVLDIG 219
I+ Y + LD G
Sbjct: 256 AIMGSYAERAQASLDAG 272
>pdb|3G07|A Chain A, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|B Chain B, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|C Chain C, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|D Chain D, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|E Chain E, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|F Chain F, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
Length = 292
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 194 SPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQAN 253
+P L +LK G VLD+G G+LT +A GP+ V ++ L+ A
Sbjct: 29 NPSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRXV-GLDIDSRLIHSAR 87
Query: 254 KSMHTYYPNLMEGGRV--QFVDGD-GREG 279
+++ Y L E R+ Q ++GD G EG
Sbjct: 88 QNIRHY---LSEELRLPPQTLEGDPGAEG 113
>pdb|4GVI|A Chain A, Crystal Structure Of Mutant (D248n) Salmonella Typhimurium
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-1,6-Anhmurnac
pdb|4GVI|B Chain B, Crystal Structure Of Mutant (D248n) Salmonella Typhimurium
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-1,6-Anhmurnac
Length = 349
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 14/77 (18%)
Query: 152 IASPKVESVM------RSIDRRRFIERPIMNNPYW---DIPQSLGFGSVMSSPKVHAQAL 202
I+ K++++M R+ID RP +PYW + Q LGF V+ S + +
Sbjct: 201 ISENKLDAIMPAHVIYRAID-----PRPASGSPYWLKTVLRQELGFDGVIFSNDLSMEGA 255
Query: 203 EILKDYLKPGAKVLDIG 219
I+ Y + LD G
Sbjct: 256 AIMGSYAERAQASLDAG 272
>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
Length = 211
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 358 PALASVEEQKYWY-HPNGFYDDLDVHAQALEILKDYLKPGAKVLDIGSGSGY 408
P + E + WY P G Y V A+ LK L PG +L++G+G+GY
Sbjct: 2 PFASLAEAYEAWYGTPLGAY----VIAEEERALKGLLPPGESLLEVGAGTGY 49
>pdb|1NE2|A Chain A, Crystal Structure Of Thermoplasma Acidophilum 1320
(Apc5513)
pdb|1NE2|B Chain B, Crystal Structure Of Thermoplasma Acidophilum 1320
(Apc5513)
Length = 200
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 19/123 (15%)
Query: 202 LEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYP 261
+EI D G V+D G+G+G L AC ++++G V A + D + A ++
Sbjct: 42 IEIYNDGNIGGRSVIDAGTGNGIL-ACGSYLLGAE-SVTAFDIDPDAIETAKRNC----- 94
Query: 262 NLMEGGRVQFVDGDGREGHAAEGPYDVIY----VGGAVHHYPFKLMDQLKPGGVMWFTIG 317
G V F D E G YD G V H +D+ ++IG
Sbjct: 95 -----GGVNFXVADVSE---ISGKYDTWIXNPPFGSVVKHSDRAFIDKAFETSXWIYSIG 146
Query: 318 NAE 320
NA+
Sbjct: 147 NAK 149
>pdb|2GK1|A Chain A, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|C Chain C, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|E Chain E, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|G Chain G, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GJX|A Chain A, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|D Chain D, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|E Chain E, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|H Chain H, Crystallographic Structure Of Human Beta-Hexosaminidase A
Length = 507
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 354 LWRLPALASVEEQKYWYHPNGFYDDLDVHAQALEILKDYLKPGAKVLD 401
LW P +Q+Y +PN F DV + A +PG VLD
Sbjct: 1 LWPWPQNFQTSDQRYVLYPNNFQFQYDVSSAA--------QPGCSVLD 40
>pdb|1VIM|A Chain A, Crystal Structure Of An Hypothetical Protein
pdb|1VIM|B Chain B, Crystal Structure Of An Hypothetical Protein
pdb|1VIM|C Chain C, Crystal Structure Of An Hypothetical Protein
pdb|1VIM|D Chain D, Crystal Structure Of An Hypothetical Protein
Length = 200
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 88 EHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEA-PYDIIHVGGSIEDIPEG 146
EHI L + + + R FV+G GR GY+ +A ++H+G ++ + E
Sbjct: 23 EHIKNLRNHIDLETVGEMIKLIDSARSIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVGET 82
Query: 147 V 147
V
Sbjct: 83 V 83
>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
Length = 376
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 16/122 (13%)
Query: 368 YWYHPNGFYDD---LDVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVY 424
+ YH D +D + A+ K + + G VLD+G+GSG L A KVY
Sbjct: 34 FLYHQKDMLSDRVRMDAYFNAVFQNKHHFE-GKTVLDVGTGSGILAIWSAQ--AGARKVY 90
Query: 425 AVE------HIEDLVAQANKSMHTYYPNLMEGGRVQFTEMAEKVMQLRVHMMSFTLEEQS 478
AVE H LV +AN H ++EG V+ + EKV + M + L +S
Sbjct: 91 AVEATKMADHARALV-KANNLDHIV--EVIEGS-VEDISLPEKVDVIISEWMGYFLLRES 146
Query: 479 II 480
+
Sbjct: 147 MF 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,499,897
Number of Sequences: 62578
Number of extensions: 767567
Number of successful extensions: 2430
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 2288
Number of HSP's gapped (non-prelim): 177
length of query: 492
length of database: 14,973,337
effective HSP length: 103
effective length of query: 389
effective length of database: 8,527,803
effective search space: 3317315367
effective search space used: 3317315367
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)