Query psy7834
Match_columns 492
No_of_seqs 494 out of 5613
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 20:04:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7834.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7834hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2518 Pcm Protein-L-isoaspar 99.9 1.3E-26 2.9E-31 206.8 16.8 176 143-328 6-182 (209)
2 PF01135 PCMT: Protein-L-isoas 99.9 5.6E-26 1.2E-30 207.8 14.3 169 143-318 5-174 (209)
3 PLN02336 phosphoethanolamine N 99.9 1.4E-24 3.1E-29 226.4 20.9 253 43-317 26-370 (475)
4 PRK13942 protein-L-isoaspartat 99.9 2.9E-24 6.2E-29 199.2 17.9 170 143-319 9-179 (212)
5 PRK13944 protein-L-isoaspartat 99.9 9.8E-24 2.1E-28 194.8 18.8 165 148-318 11-175 (205)
6 COG4106 Tam Trans-aconitate me 99.9 2.4E-25 5.3E-30 195.3 3.3 208 209-456 28-245 (257)
7 TIGR00080 pimt protein-L-isoas 99.9 7E-23 1.5E-27 190.8 18.4 170 142-318 9-179 (215)
8 KOG1661|consensus 99.9 7E-23 1.5E-27 179.2 15.1 189 140-328 10-207 (237)
9 PRK00312 pcm protein-L-isoaspa 99.9 2E-20 4.3E-25 174.1 17.6 166 142-317 11-176 (212)
10 COG2518 Pcm Protein-L-isoaspar 99.9 3.2E-21 6.9E-26 172.4 11.3 133 1-152 24-164 (209)
11 PF01135 PCMT: Protein-L-isoas 99.8 9.6E-21 2.1E-25 173.4 7.4 131 1-147 24-158 (209)
12 PRK13943 protein-L-isoaspartat 99.8 2.2E-19 4.7E-24 175.0 16.7 167 143-317 10-181 (322)
13 PRK01544 bifunctional N5-gluta 99.8 2.3E-18 4.9E-23 179.0 23.3 282 12-317 78-463 (506)
14 PRK13942 protein-L-isoaspartat 99.8 1.3E-19 2.7E-24 168.1 11.6 130 1-146 28-161 (212)
15 PLN02336 phosphoethanolamine N 99.8 1.6E-18 3.4E-23 181.1 17.1 105 200-316 28-142 (475)
16 PRK13944 protein-L-isoaspartat 99.8 7.2E-19 1.6E-23 162.3 11.3 131 1-146 24-158 (205)
17 COG2226 UbiE Methylase involve 99.8 1.2E-18 2.6E-23 161.0 11.5 101 209-315 49-155 (238)
18 TIGR00080 pimt protein-L-isoas 99.8 3.1E-18 6.8E-23 159.5 11.3 129 1-145 29-161 (215)
19 PF01209 Ubie_methyltran: ubiE 99.8 2.1E-18 4.6E-23 161.3 9.7 109 200-315 38-152 (233)
20 PF12847 Methyltransf_18: Meth 99.7 2.3E-16 4.9E-21 131.2 12.2 101 211-316 1-111 (112)
21 PLN02233 ubiquinone biosynthes 99.7 2.8E-16 6.1E-21 150.4 13.8 107 209-317 71-183 (261)
22 PRK00312 pcm protein-L-isoaspa 99.7 1.6E-16 3.4E-21 147.9 11.0 127 1-146 30-160 (212)
23 PRK01544 bifunctional N5-gluta 99.7 4.5E-15 9.7E-20 154.4 22.4 247 176-441 78-392 (506)
24 PF13847 Methyltransf_31: Meth 99.6 1.6E-15 3.4E-20 133.5 12.4 103 210-317 2-111 (152)
25 PF08241 Methyltransf_11: Meth 99.6 8.7E-16 1.9E-20 123.3 9.5 89 216-314 1-95 (95)
26 COG2226 UbiE Methylase involve 99.6 8.9E-16 1.9E-20 142.0 10.2 98 41-146 38-135 (238)
27 PRK01683 trans-aconitate 2-met 99.6 8.1E-16 1.8E-20 147.7 9.6 97 209-317 29-131 (258)
28 PRK13943 protein-L-isoaspartat 99.6 1E-15 2.2E-20 149.4 10.1 129 1-145 27-164 (322)
29 PLN02244 tocopherol O-methyltr 99.6 3.2E-15 6.9E-20 148.7 13.6 102 210-317 117-224 (340)
30 TIGR02752 MenG_heptapren 2-hep 99.6 4.2E-15 9.2E-20 140.3 13.6 110 200-316 36-151 (231)
31 PRK00107 gidB 16S rRNA methylt 99.6 5.2E-15 1.1E-19 133.5 13.1 104 208-318 42-147 (187)
32 PRK14103 trans-aconitate 2-met 99.6 1.5E-15 3.2E-20 145.5 10.1 102 200-317 20-127 (255)
33 COG2242 CobL Precorrin-6B meth 99.6 1.7E-14 3.7E-19 126.4 14.2 121 189-317 14-136 (187)
34 PRK15451 tRNA cmo(5)U34 methyl 99.6 8.8E-15 1.9E-19 139.2 13.3 113 198-316 43-164 (247)
35 PRK11783 rlmL 23S rRNA m(2)G24 99.6 6.5E-14 1.4E-18 151.7 21.6 105 209-318 536-658 (702)
36 TIGR00138 gidB 16S rRNA methyl 99.6 8.1E-15 1.8E-19 132.1 12.0 101 211-319 42-145 (181)
37 COG2227 UbiG 2-polyprenyl-3-me 99.6 1.3E-15 2.8E-20 138.1 5.8 100 210-318 58-163 (243)
38 TIGR02469 CbiT precorrin-6Y C5 99.6 3.4E-14 7.4E-19 120.2 14.3 114 195-316 5-122 (124)
39 PF01209 Ubie_methyltran: ubiE 99.6 2.3E-15 4.9E-20 140.9 6.7 97 43-146 36-132 (233)
40 KOG1661|consensus 99.6 4.8E-15 1E-19 130.3 8.3 138 1-147 32-179 (237)
41 PLN02396 hexaprenyldihydroxybe 99.6 7.6E-15 1.6E-19 143.4 9.8 101 211-318 131-237 (322)
42 PRK11873 arsM arsenite S-adeno 99.6 1.5E-14 3.2E-19 140.0 11.8 103 209-316 75-183 (272)
43 TIGR00740 methyltransferase, p 99.5 7.3E-14 1.6E-18 132.5 13.9 102 209-316 51-161 (239)
44 PTZ00098 phosphoethanolamine N 99.5 4.2E-14 9.1E-19 135.6 12.2 107 199-316 42-156 (263)
45 PRK11036 putative S-adenosyl-L 99.5 2.9E-14 6.4E-19 136.5 11.1 102 210-318 43-151 (255)
46 PRK08287 cobalt-precorrin-6Y C 99.5 1.3E-13 2.7E-18 125.7 14.6 115 192-316 14-131 (187)
47 PRK11207 tellurite resistance 99.5 5.1E-14 1.1E-18 129.2 11.8 104 200-314 21-132 (197)
48 COG2230 Cfa Cyclopropane fatty 99.5 5E-14 1.1E-18 132.6 11.8 99 209-316 70-176 (283)
49 PF13649 Methyltransf_25: Meth 99.5 1.5E-14 3.1E-19 117.9 6.9 90 215-310 1-101 (101)
50 TIGR03533 L3_gln_methyl protei 99.5 1.6E-13 3.4E-18 132.9 14.6 135 178-318 86-253 (284)
51 PRK00377 cbiT cobalt-precorrin 99.5 1.3E-13 2.9E-18 126.6 13.3 120 192-317 23-146 (198)
52 PRK10258 biotin biosynthesis p 99.5 4.3E-14 9.3E-19 135.1 10.2 95 211-318 42-142 (251)
53 PF02353 CMAS: Mycolic acid cy 99.5 4.1E-14 8.9E-19 135.4 10.0 99 209-316 60-166 (273)
54 KOG1540|consensus 99.5 9E-14 1.9E-18 125.9 11.4 105 209-315 98-213 (296)
55 PRK15068 tRNA mo(5)U34 methylt 99.5 1.3E-13 2.8E-18 135.7 13.4 100 210-316 121-226 (322)
56 PF05175 MTS: Methyltransferas 99.5 2.2E-13 4.8E-18 122.0 13.0 110 199-317 21-141 (170)
57 COG2264 PrmA Ribosomal protein 99.5 1.4E-13 3E-18 130.7 12.0 122 184-316 139-263 (300)
58 TIGR00477 tehB tellurite resis 99.5 1.5E-13 3.3E-18 125.8 11.9 105 199-315 20-132 (195)
59 TIGR00452 methyltransferase, p 99.5 2.5E-13 5.5E-18 132.1 13.8 101 209-316 119-225 (314)
60 PRK11805 N5-glutamine S-adenos 99.5 4.4E-13 9.6E-18 130.9 14.2 136 178-319 98-266 (307)
61 KOG1270|consensus 99.5 5.6E-14 1.2E-18 128.3 7.2 98 212-318 90-197 (282)
62 PRK00121 trmB tRNA (guanine-N( 99.5 2E-13 4.4E-18 125.7 10.8 103 210-318 39-158 (202)
63 TIGR00406 prmA ribosomal prote 99.5 7.2E-13 1.6E-17 128.8 15.1 111 198-316 146-259 (288)
64 PRK08317 hypothetical protein; 99.5 4.5E-13 9.8E-18 127.0 13.3 111 199-317 9-125 (241)
65 PRK05785 hypothetical protein; 99.5 3.1E-13 6.6E-18 126.5 11.5 95 200-309 40-140 (226)
66 PRK11088 rrmA 23S rRNA methylt 99.5 4.7E-13 1E-17 129.3 13.0 109 199-318 72-183 (272)
67 PRK04266 fibrillarin; Provisio 99.5 7.6E-13 1.6E-17 123.2 13.7 114 196-317 56-177 (226)
68 PRK14966 unknown domain/N5-glu 99.5 8.8E-13 1.9E-17 131.1 14.7 136 177-320 218-385 (423)
69 PF06325 PrmA: Ribosomal prote 99.5 3.9E-13 8.5E-18 129.2 11.4 119 184-316 138-259 (295)
70 TIGR02072 BioC biotin biosynth 99.5 4.4E-13 9.5E-18 127.1 11.5 109 199-317 21-136 (240)
71 PLN02490 MPBQ/MSBQ methyltrans 99.5 2.5E-13 5.5E-18 133.1 9.9 98 210-316 112-215 (340)
72 PLN02233 ubiquinone biosynthes 99.5 4.4E-13 9.5E-18 128.4 11.4 97 43-146 62-161 (261)
73 PF08242 Methyltransf_12: Meth 99.5 1E-14 2.2E-19 118.4 0.0 91 216-312 1-99 (99)
74 TIGR00091 tRNA (guanine-N(7)-) 99.4 4.7E-13 1E-17 122.5 10.7 102 211-318 16-134 (194)
75 COG2519 GCD14 tRNA(1-methylade 99.4 1.1E-12 2.3E-17 120.2 12.9 127 189-322 74-201 (256)
76 PRK06922 hypothetical protein; 99.4 9.5E-13 2.1E-17 136.6 13.3 101 210-317 417-538 (677)
77 TIGR00536 hemK_fam HemK family 99.4 1.6E-12 3.5E-17 126.2 14.2 137 178-320 79-248 (284)
78 PRK15001 SAM-dependent 23S rib 99.4 1.5E-12 3.4E-17 129.4 14.2 101 212-316 229-340 (378)
79 PRK00517 prmA ribosomal protei 99.4 1.9E-12 4.1E-17 123.4 14.2 105 198-316 106-213 (250)
80 PRK07402 precorrin-6B methylas 99.4 2.3E-12 4.9E-17 118.4 14.2 119 192-318 23-144 (196)
81 smart00828 PKS_MT Methyltransf 99.4 6.8E-13 1.5E-17 124.6 10.8 99 213-317 1-105 (224)
82 PF13847 Methyltransf_31: Meth 99.4 7.7E-13 1.7E-17 116.3 10.1 86 55-146 2-89 (152)
83 PF05401 NodS: Nodulation prot 99.4 2.7E-13 5.9E-18 119.8 7.0 94 212-316 44-146 (201)
84 TIGR03587 Pse_Me-ase pseudamin 99.4 1.4E-12 2.9E-17 120.0 11.6 80 208-299 40-119 (204)
85 PRK12335 tellurite resistance 99.4 1.4E-12 3.1E-17 126.8 12.5 96 211-316 120-223 (287)
86 PF08704 GCD14: tRNA methyltra 99.4 3.1E-12 6.8E-17 119.6 13.7 133 185-323 16-153 (247)
87 PRK11705 cyclopropane fatty ac 99.4 1.6E-12 3.5E-17 130.8 12.1 95 209-316 165-267 (383)
88 COG2890 HemK Methylase of poly 99.4 3.2E-12 7E-17 123.0 13.6 135 177-320 76-242 (280)
89 TIGR03534 RF_mod_PrmC protein- 99.4 5.2E-12 1.1E-16 120.7 14.8 101 211-318 87-219 (251)
90 PF08003 Methyltransf_9: Prote 99.4 2.7E-12 5.9E-17 120.8 12.0 121 189-316 91-219 (315)
91 smart00138 MeTrc Methyltransfe 99.4 2.1E-12 4.5E-17 123.7 11.3 105 211-315 99-241 (264)
92 PLN02244 tocopherol O-methyltr 99.4 1.6E-12 3.5E-17 129.3 10.9 98 41-146 100-202 (340)
93 TIGR02752 MenG_heptapren 2-hep 99.4 2.5E-12 5.3E-17 121.4 11.6 96 43-145 34-129 (231)
94 PF12847 Methyltransf_18: Meth 99.4 2.5E-12 5.4E-17 106.8 10.1 78 56-138 1-78 (112)
95 PLN02781 Probable caffeoyl-CoA 99.4 3.9E-12 8.4E-17 119.6 12.4 112 199-315 57-177 (234)
96 KOG1541|consensus 99.4 1.7E-12 3.8E-17 115.0 9.2 113 193-320 32-164 (270)
97 TIGR00537 hemK_rel_arch HemK-r 99.4 8.8E-12 1.9E-16 112.7 13.9 97 210-317 18-141 (179)
98 PRK00216 ubiE ubiquinone/menaq 99.4 5.5E-12 1.2E-16 119.5 13.1 111 200-316 42-158 (239)
99 PF13659 Methyltransf_26: Meth 99.4 1.3E-12 2.7E-17 109.5 7.6 100 212-317 1-116 (117)
100 PRK09489 rsmC 16S ribosomal RN 99.4 5.9E-12 1.3E-16 124.6 13.0 107 199-316 186-303 (342)
101 PF13489 Methyltransf_23: Meth 99.4 1.9E-12 4.1E-17 114.7 8.6 100 201-318 12-117 (161)
102 TIGR03840 TMPT_Se_Te thiopurin 99.4 7.4E-12 1.6E-16 115.7 12.6 103 210-315 33-151 (213)
103 PRK14967 putative methyltransf 99.4 1.5E-11 3.2E-16 115.3 14.7 100 209-317 34-160 (223)
104 TIGR03704 PrmC_rel_meth putati 99.4 1.3E-11 2.9E-16 117.2 14.3 132 178-319 51-219 (251)
105 PLN03075 nicotianamine synthas 99.4 8.8E-12 1.9E-16 119.0 13.1 101 211-316 123-233 (296)
106 PRK14121 tRNA (guanine-N(7)-)- 99.3 9.9E-12 2.1E-16 123.0 13.1 111 200-318 113-237 (390)
107 PF03848 TehB: Tellurite resis 99.3 7.1E-12 1.5E-16 112.4 10.7 96 211-316 30-133 (192)
108 PTZ00146 fibrillarin; Provisio 99.3 1.3E-11 2.9E-16 117.2 12.9 114 196-316 116-237 (293)
109 TIGR02716 C20_methyl_CrtF C-20 99.3 1.2E-11 2.5E-16 121.8 12.9 100 209-316 147-254 (306)
110 PRK09328 N5-glutamine S-adenos 99.3 2.2E-11 4.8E-16 118.1 14.4 133 178-318 74-240 (275)
111 KOG1540|consensus 99.3 8.2E-12 1.8E-16 113.4 10.0 109 44-156 90-208 (296)
112 COG2813 RsmC 16S RNA G1207 met 99.3 1.9E-11 4.2E-16 115.5 12.7 108 199-316 148-266 (300)
113 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 1.6E-11 3.4E-16 115.1 12.1 101 209-316 37-143 (223)
114 COG4122 Predicted O-methyltran 99.3 2.4E-11 5.1E-16 111.0 12.7 111 200-315 49-165 (219)
115 TIGR02021 BchM-ChlM magnesium 99.3 1.9E-11 4.1E-16 114.4 12.5 105 199-313 43-155 (219)
116 TIGR01177 conserved hypothetic 99.3 2.9E-11 6.3E-16 120.0 14.4 116 194-319 167-297 (329)
117 COG4123 Predicted O-methyltran 99.3 1.2E-11 2.7E-16 114.5 10.7 115 199-319 33-173 (248)
118 PRK11188 rrmJ 23S rRNA methylt 99.3 9.9E-12 2.1E-16 114.8 10.2 93 209-317 49-166 (209)
119 PF07021 MetW: Methionine bios 99.3 1E-11 2.2E-16 109.8 9.6 102 204-319 6-112 (193)
120 TIGR00446 nop2p NOL1/NOP2/sun 99.3 2.4E-11 5.1E-16 116.7 12.9 104 209-317 69-200 (264)
121 PRK00107 gidB 16S rRNA methylt 99.3 7.6E-12 1.7E-16 113.0 8.7 77 53-136 42-118 (187)
122 PRK06202 hypothetical protein; 99.3 1.3E-11 2.9E-16 116.4 10.8 95 210-314 59-164 (232)
123 PLN02476 O-methyltransferase 99.3 2.5E-11 5.4E-16 115.3 12.4 112 199-315 107-227 (278)
124 PRK14901 16S rRNA methyltransf 99.3 2.9E-11 6.2E-16 124.4 13.4 103 209-316 250-384 (434)
125 TIGR03438 probable methyltrans 99.3 3.3E-11 7.2E-16 117.9 13.1 114 200-317 52-178 (301)
126 PRK14903 16S rRNA methyltransf 99.3 3.4E-11 7.4E-16 123.3 13.6 105 209-318 235-368 (431)
127 PRK14904 16S rRNA methyltransf 99.3 4.5E-11 9.7E-16 123.4 14.0 103 209-317 248-378 (445)
128 TIGR03587 Pse_Me-ase pseudamin 99.3 5.9E-11 1.3E-15 109.2 12.9 80 53-144 40-119 (204)
129 PLN02585 magnesium protoporphy 99.3 6.3E-11 1.4E-15 115.6 13.7 116 197-318 129-251 (315)
130 PRK14968 putative methyltransf 99.3 1.2E-10 2.5E-15 106.2 14.7 109 200-317 14-149 (188)
131 KOG1499|consensus 99.3 2.1E-12 4.6E-17 123.4 2.8 81 393-489 58-139 (346)
132 PF01596 Methyltransf_3: O-met 99.3 1.9E-11 4.2E-16 111.8 8.8 112 199-315 34-154 (205)
133 KOG2904|consensus 99.3 1.3E-10 2.8E-15 106.6 14.0 138 175-317 108-286 (328)
134 TIGR00138 gidB 16S rRNA methyl 99.2 2.4E-11 5.2E-16 109.6 9.1 76 56-138 42-117 (181)
135 PRK10901 16S rRNA methyltransf 99.2 7.7E-11 1.7E-15 121.0 14.0 109 200-317 235-373 (427)
136 PRK11207 tellurite resistance 99.2 2.9E-11 6.2E-16 110.9 9.4 89 44-143 20-108 (197)
137 PF13649 Methyltransf_25: Meth 99.2 1.4E-11 3E-16 100.3 6.6 79 60-144 1-82 (101)
138 PRK14902 16S rRNA methyltransf 99.2 7.7E-11 1.7E-15 121.8 13.6 103 209-316 248-379 (444)
139 TIGR02081 metW methionine bios 99.2 3.7E-11 8.1E-16 110.1 9.8 100 205-318 7-111 (194)
140 PRK05785 hypothetical protein; 99.2 3.5E-11 7.6E-16 112.6 9.7 89 43-146 38-126 (226)
141 PRK03522 rumB 23S rRNA methylu 99.2 2E-11 4.4E-16 120.3 8.4 103 24-136 143-246 (315)
142 PRK13168 rumA 23S rRNA m(5)U19 99.2 3E-11 6.5E-16 124.7 9.8 103 24-136 267-373 (443)
143 COG2242 CobL Precorrin-6B meth 99.2 4.9E-11 1.1E-15 104.8 9.4 89 43-139 23-111 (187)
144 PRK13255 thiopurine S-methyltr 99.2 1.1E-10 2.4E-15 108.3 12.3 103 209-314 35-153 (218)
145 KOG1271|consensus 99.2 9.3E-11 2E-15 101.0 10.6 114 198-316 48-181 (227)
146 TIGR02469 CbiT precorrin-6Y C5 99.2 6.8E-11 1.5E-15 99.8 9.9 91 42-140 7-98 (124)
147 PLN02672 methionine S-methyltr 99.2 1.7E-10 3.8E-15 127.4 15.4 142 177-320 82-282 (1082)
148 smart00650 rADc Ribosomal RNA 99.2 1.1E-10 2.4E-15 104.4 11.5 105 200-316 4-113 (169)
149 COG2227 UbiG 2-polyprenyl-3-me 99.2 8.3E-12 1.8E-16 113.5 4.0 83 55-146 58-140 (243)
150 PF08241 Methyltransf_11: Meth 99.2 5.6E-11 1.2E-15 95.1 8.1 73 61-143 1-73 (95)
151 TIGR00563 rsmB ribosomal RNA s 99.2 1.7E-10 3.7E-15 118.5 13.7 112 199-317 228-369 (426)
152 PRK14966 unknown domain/N5-glu 99.2 8.5E-11 1.8E-15 117.1 11.0 111 12-139 217-328 (423)
153 PRK04457 spermidine synthase; 99.2 1.3E-10 2.8E-15 111.2 11.8 103 209-316 64-177 (262)
154 PLN02396 hexaprenyldihydroxybe 99.2 4.3E-11 9.3E-16 117.1 8.5 85 55-146 130-214 (322)
155 TIGR03533 L3_gln_methyl protei 99.2 1.1E-10 2.3E-15 113.1 11.0 114 12-138 84-197 (284)
156 PRK13168 rumA 23S rRNA m(5)U19 99.2 1.5E-10 3.1E-15 119.6 12.7 112 199-320 287-404 (443)
157 COG2265 TrmA SAM-dependent met 99.2 3.8E-11 8.3E-16 121.6 8.0 104 23-136 262-368 (432)
158 PRK11873 arsM arsenite S-adeno 99.2 8.4E-11 1.8E-15 113.8 9.8 87 53-144 74-160 (272)
159 PLN02589 caffeoyl-CoA O-methyl 99.2 2.3E-10 5E-15 107.5 12.2 111 199-314 68-188 (247)
160 PRK07580 Mg-protoporphyrin IX 99.2 2.1E-10 4.5E-15 108.1 12.2 91 199-299 50-141 (230)
161 PRK00811 spermidine synthase; 99.2 1.9E-10 4.2E-15 111.3 11.5 107 210-317 75-192 (283)
162 PRK15451 tRNA cmo(5)U34 methyl 99.2 1.6E-10 3.5E-15 110.0 10.8 86 53-144 53-139 (247)
163 TIGR02021 BchM-ChlM magnesium 99.2 1.4E-10 2.9E-15 108.5 10.0 94 40-143 39-132 (219)
164 PRK11036 putative S-adenosyl-L 99.2 8.3E-11 1.8E-15 112.6 8.6 82 55-143 43-125 (255)
165 TIGR00438 rrmJ cell division p 99.2 1.7E-10 3.7E-15 105.1 10.2 92 209-316 30-146 (188)
166 PRK14103 trans-aconitate 2-met 99.2 9.8E-11 2.1E-15 112.1 8.9 86 44-145 19-104 (255)
167 PF05175 MTS: Methyltransferas 99.2 2E-10 4.3E-15 102.8 10.2 86 45-139 22-107 (170)
168 PRK10258 biotin biosynthesis p 99.2 1.1E-10 2.3E-15 111.7 9.0 83 45-142 33-115 (251)
169 COG4106 Tam Trans-aconitate me 99.2 5.5E-11 1.2E-15 105.4 6.3 82 53-146 27-108 (257)
170 PRK08287 cobalt-precorrin-6Y C 99.2 2.1E-10 4.5E-15 104.5 10.4 87 43-139 20-106 (187)
171 KOG4300|consensus 99.1 6.1E-11 1.3E-15 104.3 6.3 96 213-315 78-181 (252)
172 PRK10909 rsmD 16S rRNA m(2)G96 99.1 7.9E-10 1.7E-14 100.8 13.8 113 198-318 41-161 (199)
173 PTZ00098 phosphoethanolamine N 99.1 1.6E-10 3.4E-15 110.9 9.6 89 44-143 42-130 (263)
174 PRK06202 hypothetical protein; 99.1 2E-10 4.2E-15 108.5 9.9 84 55-146 59-145 (232)
175 PHA03412 putative methyltransf 99.1 2.5E-10 5.4E-15 104.9 10.2 171 56-247 49-229 (241)
176 PRK00377 cbiT cobalt-precorrin 99.1 2E-10 4.4E-15 105.5 9.7 90 43-138 29-119 (198)
177 PRK03522 rumB 23S rRNA methylu 99.1 2.7E-10 5.9E-15 112.3 11.2 102 211-320 173-278 (315)
178 COG2230 Cfa Cyclopropane fatty 99.1 1.9E-10 4E-15 108.6 9.4 88 45-143 63-150 (283)
179 TIGR01983 UbiG ubiquinone bios 99.1 4.7E-10 1E-14 105.3 12.2 112 198-317 30-150 (224)
180 PF02353 CMAS: Mycolic acid cy 99.1 1.8E-10 4E-15 110.4 9.5 95 38-143 43-140 (273)
181 PRK05134 bifunctional 3-demeth 99.1 3.6E-10 7.8E-15 106.8 11.3 100 209-317 46-152 (233)
182 TIGR00477 tehB tellurite resis 99.1 2.1E-10 4.4E-15 105.1 9.2 88 44-143 20-107 (195)
183 PRK11805 N5-glutamine S-adenos 99.1 2.7E-10 5.9E-15 111.3 10.6 112 13-137 97-208 (307)
184 smart00650 rADc Ribosomal RNA 99.1 2.5E-10 5.3E-15 102.2 9.5 86 43-140 2-87 (169)
185 COG2264 PrmA Ribosomal protein 99.1 2.9E-10 6.2E-15 108.3 9.9 89 44-139 150-238 (300)
186 PRK01683 trans-aconitate 2-met 99.1 3E-10 6.5E-15 109.1 10.1 87 44-144 21-107 (258)
187 COG2890 HemK Methylase of poly 99.1 3.4E-10 7.4E-15 109.0 10.1 109 13-139 76-185 (280)
188 TIGR00479 rumA 23S rRNA (uraci 99.1 1.9E-10 4.1E-15 118.6 8.7 102 25-136 263-368 (431)
189 TIGR00536 hemK_fam HemK family 99.1 5.9E-10 1.3E-14 108.3 11.5 114 13-139 78-191 (284)
190 PRK11088 rrmA 23S rRNA methylt 99.1 3.3E-10 7.3E-15 109.4 9.7 74 56-139 85-160 (272)
191 PF03848 TehB: Tellurite resis 99.1 3.7E-10 8.1E-15 101.4 9.1 92 44-147 20-111 (192)
192 PRK15068 tRNA mo(5)U34 methylt 99.1 4.5E-10 9.7E-15 110.7 10.1 94 44-146 112-205 (322)
193 PRK13256 thiopurine S-methyltr 99.1 1.3E-09 2.9E-14 100.6 12.5 105 209-316 41-163 (226)
194 TIGR02085 meth_trns_rumB 23S r 99.1 2.7E-10 5.9E-15 114.7 8.5 104 23-136 202-306 (374)
195 TIGR00740 methyltransferase, p 99.1 8.8E-10 1.9E-14 104.5 11.4 85 54-144 51-136 (239)
196 COG2519 GCD14 tRNA(1-methylade 99.1 6.5E-10 1.4E-14 102.1 9.8 90 43-139 83-172 (256)
197 PHA03411 putative methyltransf 99.1 7.7E-10 1.7E-14 104.1 10.6 78 210-299 63-140 (279)
198 TIGR00406 prmA ribosomal prote 99.1 6.2E-10 1.3E-14 108.3 10.3 89 44-140 147-235 (288)
199 PRK08317 hypothetical protein; 99.1 1E-09 2.2E-14 103.9 11.3 96 42-145 7-102 (241)
200 PRK00121 trmB tRNA (guanine-N( 99.1 3.1E-10 6.7E-15 104.5 7.4 76 56-137 40-118 (202)
201 COG2263 Predicted RNA methylas 99.1 9.2E-10 2E-14 96.3 9.7 94 24-137 21-115 (198)
202 PLN02490 MPBQ/MSBQ methyltrans 99.1 9.2E-10 2E-14 108.1 10.8 81 55-144 112-192 (340)
203 KOG3010|consensus 99.1 3.6E-10 7.8E-15 102.2 7.3 95 213-314 35-135 (261)
204 PF07021 MetW: Methionine bios 99.1 5.6E-10 1.2E-14 98.8 8.2 78 54-145 11-90 (193)
205 PLN02585 magnesium protoporphy 99.0 7.4E-10 1.6E-14 108.1 9.9 97 43-145 130-227 (315)
206 KOG1500|consensus 99.0 1.2E-10 2.6E-15 109.3 4.0 77 396-488 178-254 (517)
207 COG4123 Predicted O-methyltran 99.0 3.3E-10 7.1E-15 105.1 6.8 92 43-140 32-125 (248)
208 TIGR00452 methyltransferase, p 99.0 7.3E-10 1.6E-14 108.0 9.6 94 44-146 111-204 (314)
209 PRK04266 fibrillarin; Provisio 99.0 7.7E-10 1.7E-14 103.1 9.1 79 53-139 69-150 (226)
210 PRK00216 ubiE ubiquinone/menaq 99.0 1.6E-09 3.4E-14 102.6 11.5 95 43-143 40-134 (239)
211 PRK15128 23S rRNA m(5)C1962 me 99.0 1.3E-09 2.7E-14 110.0 11.2 102 209-315 218-338 (396)
212 PF05958 tRNA_U5-meth_tr: tRNA 99.0 2.9E-10 6.4E-15 113.4 6.5 91 23-124 166-256 (352)
213 cd02440 AdoMet_MTases S-adenos 99.0 2.8E-09 6.1E-14 86.1 10.8 95 214-315 1-103 (107)
214 PRK01581 speE spermidine synth 99.0 2.4E-09 5.2E-14 104.6 12.1 108 209-317 148-269 (374)
215 PRK12335 tellurite resistance 99.0 9.8E-10 2.1E-14 107.0 9.4 87 45-143 111-197 (287)
216 PF06325 PrmA: Ribosomal prote 99.0 1.1E-09 2.3E-14 105.6 9.3 89 43-141 148-236 (295)
217 TIGR00091 tRNA (guanine-N(7)-) 99.0 1E-09 2.3E-14 100.4 8.9 79 56-140 16-97 (194)
218 PRK07580 Mg-protoporphyrin IX 99.0 1.5E-09 3.3E-14 102.3 10.1 91 44-144 50-141 (230)
219 TIGR01177 conserved hypothetic 99.0 1.4E-09 3E-14 108.0 10.2 92 38-139 166-257 (329)
220 KOG2187|consensus 99.0 2.9E-10 6.4E-15 113.4 5.2 98 17-124 346-443 (534)
221 KOG1270|consensus 99.0 2.3E-10 4.9E-15 104.9 4.0 81 57-146 90-174 (282)
222 COG2263 Predicted RNA methylas 99.0 3.7E-09 8.1E-14 92.5 11.3 91 194-295 27-118 (198)
223 PLN02781 Probable caffeoyl-CoA 99.0 9.4E-10 2E-14 103.5 8.3 93 44-141 57-155 (234)
224 PHA03412 putative methyltransf 99.0 2.8E-09 6E-14 98.1 11.1 92 189-295 31-124 (241)
225 PLN02366 spermidine synthase 99.0 2.9E-09 6.3E-14 103.6 11.8 105 210-316 90-206 (308)
226 PRK05031 tRNA (uracil-5-)-meth 99.0 8E-10 1.7E-14 110.8 7.9 90 24-124 177-266 (362)
227 TIGR03534 RF_mod_PrmC protein- 99.0 3E-09 6.5E-14 101.6 11.2 78 56-140 87-164 (251)
228 TIGR02085 meth_trns_rumB 23S r 99.0 2.2E-09 4.9E-14 108.1 10.8 117 196-320 216-338 (374)
229 PF13659 Methyltransf_26: Meth 99.0 6.6E-10 1.4E-14 92.9 5.9 78 57-140 1-80 (117)
230 TIGR00417 speE spermidine synt 99.0 3.7E-09 7.9E-14 101.9 11.4 105 210-316 71-186 (270)
231 COG4976 Predicted methyltransf 99.0 1.7E-10 3.6E-15 103.1 1.8 109 194-317 110-226 (287)
232 PF05401 NodS: Nodulation prot 99.0 1.3E-09 2.9E-14 96.6 7.5 75 57-142 44-118 (201)
233 PRK15001 SAM-dependent 23S rib 99.0 2.4E-09 5.2E-14 106.7 10.2 92 44-141 218-309 (378)
234 COG4122 Predicted O-methyltran 99.0 2E-09 4.4E-14 98.3 8.8 99 44-147 48-149 (219)
235 TIGR00479 rumA 23S rRNA (uraci 99.0 1.9E-09 4.2E-14 111.2 9.8 103 209-320 290-400 (431)
236 TIGR02143 trmA_only tRNA (urac 99.0 1.3E-09 2.8E-14 108.9 8.1 90 24-124 168-257 (353)
237 PLN03075 nicotianamine synthas 99.0 3.7E-09 8E-14 101.1 10.7 101 31-137 100-202 (296)
238 PRK00274 ksgA 16S ribosomal RN 99.0 2E-09 4.3E-14 103.8 9.0 86 41-139 29-114 (272)
239 TIGR00537 hemK_rel_arch HemK-r 99.0 4E-09 8.6E-14 95.3 10.5 80 53-143 16-95 (179)
240 PLN02672 methionine S-methyltr 99.0 9.7E-09 2.1E-13 113.8 15.5 115 14-139 83-212 (1082)
241 PRK14896 ksgA 16S ribosomal RN 99.0 3E-09 6.6E-14 101.8 10.2 85 42-140 17-101 (258)
242 PLN02476 O-methyltransferase 99.0 1.5E-09 3.3E-14 103.2 7.8 95 44-143 107-207 (278)
243 PRK07402 precorrin-6B methylas 99.0 3.5E-09 7.6E-14 97.2 9.9 73 43-123 29-101 (196)
244 PF08704 GCD14: tRNA methyltra 99.0 3.7E-09 8.1E-14 99.0 10.1 89 43-137 29-120 (247)
245 PRK06922 hypothetical protein; 98.9 2.5E-09 5.4E-14 111.5 9.6 84 53-143 415-500 (677)
246 PTZ00338 dimethyladenosine tra 98.9 4.1E-09 9E-14 102.1 10.6 89 41-140 23-111 (294)
247 PRK00517 prmA ribosomal protei 98.9 3E-09 6.5E-14 101.4 9.2 82 44-139 107-188 (250)
248 PF02390 Methyltransf_4: Putat 98.9 4.6E-09 9.9E-14 95.7 9.9 99 213-317 19-134 (195)
249 PRK03612 spermidine synthase; 98.9 5.6E-09 1.2E-13 109.6 11.9 107 210-317 296-416 (521)
250 PHA03411 putative methyltransf 98.9 4.2E-09 9E-14 99.2 9.6 77 54-142 62-138 (279)
251 PTZ00338 dimethyladenosine tra 98.9 8.3E-09 1.8E-13 100.0 12.0 108 189-307 15-123 (294)
252 KOG3420|consensus 98.9 1.2E-09 2.6E-14 90.5 5.1 103 22-141 21-125 (185)
253 TIGR02072 BioC biotin biosynth 98.9 4.3E-09 9.2E-14 99.7 9.7 79 55-143 33-111 (240)
254 PRK09328 N5-glutamine S-adenos 98.9 7.4E-09 1.6E-13 100.4 11.4 110 15-139 75-184 (275)
255 smart00828 PKS_MT Methyltransf 98.9 3.3E-09 7.2E-14 99.5 8.7 80 58-143 1-80 (224)
256 KOG1271|consensus 98.9 4E-09 8.6E-14 91.1 8.1 93 44-141 49-147 (227)
257 TIGR00755 ksgA dimethyladenosi 98.9 1.3E-08 2.8E-13 97.3 12.7 108 193-314 13-124 (253)
258 PF08242 Methyltransf_12: Meth 98.9 3.5E-10 7.5E-15 91.6 1.6 78 61-144 1-80 (99)
259 TIGR02081 metW methionine bios 98.9 3.1E-09 6.7E-14 97.4 8.1 78 54-145 11-90 (194)
260 PRK14967 putative methyltransf 98.9 6.1E-09 1.3E-13 97.6 10.2 77 53-138 33-109 (223)
261 TIGR02143 trmA_only tRNA (urac 98.9 6.6E-09 1.4E-13 103.7 10.9 115 198-320 183-315 (353)
262 PRK00274 ksgA 16S ribosomal RN 98.9 8E-09 1.7E-13 99.6 11.2 102 193-307 26-127 (272)
263 PRK10909 rsmD 16S rRNA m(2)G96 98.9 3.9E-09 8.4E-14 96.3 8.4 92 40-139 38-130 (199)
264 TIGR03704 PrmC_rel_meth putati 98.9 6.7E-09 1.4E-13 98.8 10.3 113 12-140 49-163 (251)
265 PRK14896 ksgA 16S ribosomal RN 98.9 1.1E-08 2.5E-13 97.8 11.8 102 193-308 13-114 (258)
266 COG2813 RsmC 16S RNA G1207 met 98.9 6E-09 1.3E-13 98.7 9.5 88 44-141 148-235 (300)
267 PRK05031 tRNA (uracil-5-)-meth 98.9 8.5E-09 1.8E-13 103.4 10.8 116 197-320 191-324 (362)
268 PRK14121 tRNA (guanine-N(7)-)- 98.9 6.5E-09 1.4E-13 103.1 9.6 87 45-139 113-201 (390)
269 PF05724 TPMT: Thiopurine S-me 98.9 4.2E-09 9.2E-14 97.5 7.6 116 193-314 22-153 (218)
270 PF01596 Methyltransf_3: O-met 98.9 3E-09 6.5E-14 97.4 6.5 98 44-146 34-137 (205)
271 KOG1541|consensus 98.9 4.6E-09 9.9E-14 93.5 7.2 85 43-142 37-124 (270)
272 PRK11705 cyclopropane fatty ac 98.9 8.3E-09 1.8E-13 104.0 10.2 83 46-143 159-241 (383)
273 TIGR00446 nop2p NOL1/NOP2/sun 98.9 6.6E-09 1.4E-13 99.7 9.0 82 53-139 68-149 (264)
274 KOG2904|consensus 98.9 1.3E-08 2.8E-13 93.7 10.1 117 12-139 109-231 (328)
275 TIGR01934 MenG_MenH_UbiE ubiqu 98.9 1.5E-08 3.3E-13 94.8 10.7 91 44-143 29-119 (223)
276 PLN02232 ubiquinone biosynthes 98.9 4.6E-09 1E-13 92.9 6.7 75 240-316 1-81 (160)
277 PRK09489 rsmC 16S ribosomal RN 98.8 1.2E-08 2.7E-13 101.0 10.1 86 45-141 187-272 (342)
278 KOG2899|consensus 98.8 7.2E-09 1.6E-13 93.6 7.4 111 202-315 49-208 (288)
279 PLN02589 caffeoyl-CoA O-methyl 98.8 6.9E-09 1.5E-13 97.6 7.5 98 44-146 68-172 (247)
280 TIGR03840 TMPT_Se_Te thiopurin 98.8 1.2E-08 2.6E-13 94.4 8.9 90 55-147 33-130 (213)
281 TIGR00755 ksgA dimethyladenosi 98.8 1.4E-08 3.1E-13 96.9 9.7 85 42-140 17-104 (253)
282 PRK11727 23S rRNA mA1618 methy 98.8 4.8E-08 1E-12 95.2 13.2 82 211-297 114-201 (321)
283 PRK14901 16S rRNA methyltransf 98.8 1.6E-08 3.5E-13 104.1 10.3 86 46-138 244-333 (434)
284 COG3963 Phospholipid N-methylt 98.8 1.8E-08 4E-13 85.9 8.4 123 179-314 19-154 (194)
285 TIGR02716 C20_methyl_CrtF C-20 98.8 2.3E-08 5.1E-13 98.4 10.6 90 45-144 140-229 (306)
286 PRK14904 16S rRNA methyltransf 98.8 2E-08 4.2E-13 103.9 10.5 79 53-137 247-325 (445)
287 KOG2915|consensus 98.8 6.3E-08 1.4E-12 89.1 12.3 125 186-316 82-209 (314)
288 PRK14903 16S rRNA methyltransf 98.8 1.9E-08 4.2E-13 103.1 10.1 81 53-138 234-315 (431)
289 PRK14968 putative methyltransf 98.8 3.3E-08 7.1E-13 90.0 10.5 86 44-139 13-99 (188)
290 PTZ00146 fibrillarin; Provisio 98.8 1.5E-08 3.2E-13 96.6 8.4 80 53-139 129-211 (293)
291 PF01170 UPF0020: Putative RNA 98.8 2.7E-08 6E-13 89.5 9.5 94 40-140 14-116 (179)
292 KOG1663|consensus 98.8 8.1E-08 1.8E-12 86.8 11.9 103 209-315 71-182 (237)
293 COG2265 TrmA SAM-dependent met 98.8 2.9E-08 6.3E-13 100.8 10.2 114 197-320 281-400 (432)
294 smart00138 MeTrc Methyltransfe 98.8 2.1E-08 4.6E-13 96.1 8.7 89 55-143 98-216 (264)
295 PRK14902 16S rRNA methyltransf 98.8 3.7E-08 8E-13 101.9 10.7 81 53-138 247-328 (444)
296 PF00891 Methyltransf_2: O-met 98.8 4.4E-08 9.5E-13 93.0 10.3 91 209-315 98-198 (241)
297 PRK11188 rrmJ 23S rRNA methylt 98.8 3.2E-08 6.9E-13 91.5 8.9 71 54-140 49-127 (209)
298 PF01170 UPF0020: Putative RNA 98.7 1.4E-07 3E-12 85.0 12.6 116 194-316 13-150 (179)
299 TIGR00095 RNA methyltransferas 98.7 2.2E-07 4.9E-12 84.3 13.7 102 210-317 48-160 (189)
300 PF03291 Pox_MCEL: mRNA cappin 98.7 3.6E-08 7.9E-13 96.9 9.0 109 211-321 62-191 (331)
301 KOG3420|consensus 98.7 3.7E-08 8.1E-13 81.8 7.5 99 189-295 24-124 (185)
302 PF02475 Met_10: Met-10+ like- 98.7 7.4E-08 1.6E-12 87.6 10.1 101 207-313 97-199 (200)
303 KOG3191|consensus 98.7 8.9E-08 1.9E-12 82.9 9.6 98 212-316 44-168 (209)
304 COG0220 Predicted S-adenosylme 98.7 6.3E-08 1.4E-12 89.7 9.4 100 213-318 50-166 (227)
305 PRK10901 16S rRNA methyltransf 98.7 7.5E-08 1.6E-12 99.0 10.7 86 45-139 235-322 (427)
306 PRK11933 yebU rRNA (cytosine-C 98.7 2E-07 4.3E-12 95.8 13.4 104 209-317 111-243 (470)
307 KOG1499|consensus 98.7 3.5E-08 7.6E-13 94.8 7.1 78 53-137 57-134 (346)
308 PRK13255 thiopurine S-methyltr 98.7 6.3E-08 1.4E-12 89.9 8.4 87 54-146 35-132 (218)
309 PRK04338 N(2),N(2)-dimethylgua 98.7 1.7E-07 3.7E-12 94.2 11.9 99 212-316 58-158 (382)
310 TIGR00563 rsmB ribosomal RNA s 98.7 1.1E-07 2.3E-12 97.9 10.4 86 45-137 229-316 (426)
311 PF08003 Methyltransf_9: Prote 98.7 9.6E-08 2.1E-12 90.5 9.1 95 44-147 105-199 (315)
312 PF13489 Methyltransf_23: Meth 98.7 7.1E-08 1.5E-12 85.2 7.7 75 54-146 20-94 (161)
313 PRK04338 N(2),N(2)-dimethylgua 98.7 5.9E-08 1.3E-12 97.5 8.0 102 28-137 30-132 (382)
314 COG1092 Predicted SAM-dependen 98.6 1.3E-07 2.9E-12 94.1 10.3 108 204-317 211-337 (393)
315 COG0030 KsgA Dimethyladenosine 98.6 1.3E-07 2.9E-12 88.5 9.7 89 40-140 16-105 (259)
316 KOG4300|consensus 98.6 3.3E-08 7.1E-13 87.3 5.2 79 58-143 78-158 (252)
317 PRK05134 bifunctional 3-demeth 98.6 8.6E-08 1.9E-12 90.5 8.6 87 44-141 38-125 (233)
318 TIGR01983 UbiG ubiquinone bios 98.6 8E-08 1.7E-12 90.1 8.3 78 56-141 45-123 (224)
319 PF06080 DUF938: Protein of un 98.6 1.7E-07 3.6E-12 84.4 9.6 111 199-315 12-140 (204)
320 PF05185 PRMT5: PRMT5 arginine 98.6 1.1E-08 2.4E-13 104.6 2.3 80 396-488 187-269 (448)
321 PRK15128 23S rRNA m(5)C1962 me 98.6 6.5E-08 1.4E-12 97.7 7.8 79 54-137 218-300 (396)
322 KOG0820|consensus 98.6 1.7E-07 3.6E-12 86.5 9.5 88 43-141 47-134 (315)
323 PRK04457 spermidine synthase; 98.6 1.3E-07 2.9E-12 90.5 8.9 79 54-137 64-143 (262)
324 PRK04148 hypothetical protein; 98.6 1.5E-07 3.2E-12 79.1 8.1 77 55-146 15-93 (134)
325 PLN02823 spermine synthase 98.6 3.3E-07 7.2E-12 90.2 11.5 106 210-317 102-221 (336)
326 PRK00050 16S rRNA m(4)C1402 me 98.6 9.4E-08 2E-12 92.0 7.4 92 195-295 5-100 (296)
327 COG2521 Predicted archaeal met 98.6 4.2E-08 9.1E-13 88.2 4.6 107 209-320 132-249 (287)
328 KOG2361|consensus 98.6 8E-08 1.7E-12 87.2 6.4 96 214-316 74-183 (264)
329 PRK00050 16S rRNA m(4)C1402 me 98.6 9.3E-08 2E-12 92.0 7.2 88 43-139 8-99 (296)
330 COG1041 Predicted DNA modifica 98.6 4.2E-07 9.1E-12 87.9 11.3 115 193-317 181-311 (347)
331 PF09445 Methyltransf_15: RNA 98.6 5.9E-08 1.3E-12 84.7 5.0 73 58-137 1-76 (163)
332 TIGR03438 probable methyltrans 98.6 2.8E-07 6E-12 90.3 10.3 68 53-124 60-127 (301)
333 COG4976 Predicted methyltransf 98.6 8.7E-09 1.9E-13 92.3 -0.6 76 53-141 122-199 (287)
334 KOG3010|consensus 98.6 7.9E-08 1.7E-12 87.2 5.5 96 54-156 30-130 (261)
335 KOG1975|consensus 98.6 1.6E-07 3.4E-12 88.6 7.5 111 208-320 114-241 (389)
336 PF02475 Met_10: Met-10+ like- 98.6 2.3E-07 4.9E-12 84.4 8.4 82 53-140 98-179 (200)
337 COG1041 Predicted DNA modifica 98.6 2E-07 4.2E-12 90.2 8.2 86 41-136 184-270 (347)
338 TIGR00478 tly hemolysin TlyA f 98.6 2.2E-07 4.8E-12 86.3 8.3 99 210-318 74-173 (228)
339 KOG2940|consensus 98.6 1E-07 2.2E-12 85.4 5.7 109 199-316 60-174 (325)
340 COG3963 Phospholipid N-methylt 98.6 1.8E-07 3.9E-12 80.0 6.9 105 15-141 19-128 (194)
341 PRK11727 23S rRNA mA1618 methy 98.5 2.3E-07 5.1E-12 90.4 8.6 81 56-141 114-200 (321)
342 PF10294 Methyltransf_16: Puta 98.5 6.8E-07 1.5E-11 80.1 11.0 104 209-316 43-156 (173)
343 PF05891 Methyltransf_PK: AdoM 98.5 1.3E-07 2.9E-12 85.5 6.3 98 212-316 56-161 (218)
344 TIGR00095 RNA methyltransferas 98.5 4.2E-07 9.1E-12 82.6 9.6 88 43-137 37-128 (189)
345 TIGR00438 rrmJ cell division p 98.5 3.1E-07 6.7E-12 83.7 8.7 71 53-139 29-107 (188)
346 PRK11783 rlmL 23S rRNA m(2)G24 98.5 1.7E-07 3.7E-12 102.1 7.8 79 54-137 536-615 (702)
347 KOG0820|consensus 98.5 7E-07 1.5E-11 82.4 10.5 100 185-295 33-133 (315)
348 PF05219 DREV: DREV methyltran 98.5 3.7E-07 8.1E-12 84.5 8.7 88 212-316 95-188 (265)
349 PF02390 Methyltransf_4: Putat 98.5 6.5E-07 1.4E-11 81.6 9.8 79 57-141 18-99 (195)
350 PRK04148 hypothetical protein; 98.5 2.2E-06 4.8E-11 72.1 12.0 90 211-315 16-108 (134)
351 PRK13256 thiopurine S-methyltr 98.5 6.4E-07 1.4E-11 82.9 9.4 92 53-147 40-141 (226)
352 COG0030 KsgA Dimethyladenosine 98.5 1.2E-06 2.5E-11 82.3 11.1 104 194-309 15-119 (259)
353 PRK10611 chemotaxis methyltran 98.5 1.3E-06 2.8E-11 84.0 11.6 104 212-315 116-261 (287)
354 KOG2915|consensus 98.5 7.9E-07 1.7E-11 82.0 9.6 89 44-138 95-185 (314)
355 PF05958 tRNA_U5-meth_tr: tRNA 98.5 2.8E-07 6E-12 92.1 7.0 115 198-320 182-314 (352)
356 PF05185 PRMT5: PRMT5 arginine 98.5 9.1E-07 2E-11 90.6 10.9 97 212-313 187-294 (448)
357 PRK00811 spermidine synthase; 98.5 3.4E-07 7.3E-12 88.8 7.0 82 55-137 75-157 (283)
358 PF05724 TPMT: Thiopurine S-me 98.4 5E-07 1.1E-11 83.8 7.7 92 53-147 34-133 (218)
359 cd02440 AdoMet_MTases S-adenos 98.4 8.5E-07 1.8E-11 71.2 7.6 77 59-142 1-78 (107)
360 PF10672 Methyltrans_SAM: S-ad 98.4 7.9E-07 1.7E-11 85.2 8.3 102 210-316 122-238 (286)
361 PF03602 Cons_hypoth95: Conser 98.4 7.5E-07 1.6E-11 80.3 7.2 117 196-318 27-155 (183)
362 PF01739 CheR: CheR methyltran 98.4 8.3E-07 1.8E-11 80.7 7.4 104 212-315 32-174 (196)
363 COG2520 Predicted methyltransf 98.4 2.1E-06 4.5E-11 83.9 10.5 102 209-316 186-289 (341)
364 PF03141 Methyltransf_29: Puta 98.3 1.9E-06 4.1E-11 86.8 9.4 80 58-152 119-214 (506)
365 KOG3191|consensus 98.3 2.5E-06 5.4E-11 74.1 8.8 101 27-137 17-117 (209)
366 PF01269 Fibrillarin: Fibrilla 98.3 4.8E-06 1E-10 75.5 10.9 114 196-316 57-178 (229)
367 COG2520 Predicted methyltransf 98.3 1.4E-06 3.1E-11 85.0 7.8 88 43-140 179-266 (341)
368 PLN02366 spermidine synthase 98.3 2.4E-06 5.1E-11 83.4 9.2 94 41-136 75-171 (308)
369 KOG1500|consensus 98.3 2.2E-06 4.8E-11 81.1 8.3 76 54-137 175-250 (517)
370 PF02527 GidB: rRNA small subu 98.3 6.4E-06 1.4E-10 74.0 10.9 114 199-319 33-151 (184)
371 COG0742 N6-adenine-specific me 98.3 1.2E-05 2.7E-10 71.4 12.4 102 211-318 43-156 (187)
372 COG1092 Predicted SAM-dependen 98.3 1.4E-06 3.1E-11 86.8 6.9 76 56-136 217-296 (393)
373 COG0421 SpeE Spermidine syntha 98.3 6.4E-06 1.4E-10 78.9 11.0 102 213-316 78-190 (282)
374 COG1352 CheR Methylase of chem 98.3 1.4E-05 3.1E-10 75.9 12.8 104 212-315 97-240 (268)
375 PF09445 Methyltransf_15: RNA 98.3 1.2E-06 2.7E-11 76.4 5.1 73 214-293 2-77 (163)
376 PRK00536 speE spermidine synth 98.2 7.4E-06 1.6E-10 77.6 10.5 101 210-317 71-172 (262)
377 COG0144 Sun tRNA and rRNA cyto 98.2 1.2E-05 2.6E-10 80.3 12.6 104 209-317 154-289 (355)
378 PF00398 RrnaAD: Ribosomal RNA 98.2 6.3E-06 1.4E-10 79.1 9.9 90 38-139 14-106 (262)
379 TIGR00478 tly hemolysin TlyA f 98.2 2.8E-06 6.1E-11 79.0 7.2 40 55-96 74-113 (228)
380 PF01564 Spermine_synth: Sperm 98.2 5E-06 1.1E-10 78.7 8.9 105 210-316 75-191 (246)
381 TIGR00308 TRM1 tRNA(guanine-26 98.2 5.5E-06 1.2E-10 82.9 9.4 99 213-316 46-147 (374)
382 PRK01581 speE spermidine synth 98.2 3E-06 6.4E-11 83.2 7.2 83 54-137 148-233 (374)
383 PF02384 N6_Mtase: N-6 DNA Met 98.2 3.2E-06 7E-11 83.5 7.7 125 189-318 26-185 (311)
384 PF03602 Cons_hypoth95: Conser 98.2 1.6E-06 3.4E-11 78.2 4.6 94 40-139 26-123 (183)
385 PF05148 Methyltransf_8: Hypot 98.2 3.9E-06 8.3E-11 75.3 7.0 94 198-316 60-158 (219)
386 KOG1663|consensus 98.2 6.1E-06 1.3E-10 74.8 8.3 92 44-140 62-159 (237)
387 COG0116 Predicted N6-adenine-s 98.2 6.4E-06 1.4E-10 81.0 8.9 96 38-139 175-308 (381)
388 PRK03612 spermidine synthase; 98.2 3.2E-06 6.8E-11 89.0 7.0 82 55-137 296-380 (521)
389 PF10294 Methyltransf_16: Puta 98.2 9.2E-06 2E-10 72.7 8.7 85 53-141 42-130 (173)
390 PF03141 Methyltransf_29: Puta 98.1 2.2E-06 4.8E-11 86.3 4.7 93 213-320 119-223 (506)
391 TIGR00417 speE spermidine synt 98.1 6.1E-06 1.3E-10 79.6 7.4 81 55-137 71-152 (270)
392 KOG2730|consensus 98.1 2.6E-06 5.6E-11 76.2 4.1 75 56-137 94-172 (263)
393 COG0220 Predicted S-adenosylme 98.1 1.5E-05 3.3E-10 74.0 9.2 78 58-141 50-130 (227)
394 PF10672 Methyltrans_SAM: S-ad 98.1 5.5E-06 1.2E-10 79.5 6.3 78 54-136 121-201 (286)
395 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.1 1.1E-05 2.4E-10 78.0 8.4 103 209-316 83-219 (283)
396 COG0293 FtsJ 23S rRNA methylas 98.1 3.5E-05 7.5E-10 69.6 10.8 93 208-316 42-159 (205)
397 PF12147 Methyltransf_20: Puta 98.1 7.8E-05 1.7E-09 70.2 13.0 103 211-318 135-251 (311)
398 PF08123 DOT1: Histone methyla 98.0 2E-05 4.4E-10 72.1 8.9 112 196-313 29-155 (205)
399 TIGR02987 met_A_Alw26 type II 98.0 4.1E-05 8.8E-10 81.1 12.2 101 189-294 4-121 (524)
400 COG0116 Predicted N6-adenine-s 98.0 7.3E-05 1.6E-09 73.7 12.8 105 209-317 189-345 (381)
401 KOG3045|consensus 98.0 2.1E-05 4.6E-10 72.2 8.0 91 199-316 169-264 (325)
402 KOG2187|consensus 98.0 2.1E-05 4.5E-10 79.3 8.4 115 196-320 370-494 (534)
403 COG0742 N6-adenine-specific me 98.0 3.1E-05 6.8E-10 68.8 8.5 95 41-141 28-125 (187)
404 COG0357 GidB Predicted S-adeno 98.0 4.8E-05 1E-09 69.6 9.6 96 212-314 68-166 (215)
405 PF02527 GidB: rRNA small subu 98.0 1.6E-05 3.6E-10 71.4 6.4 74 59-139 51-124 (184)
406 PF00398 RrnaAD: Ribosomal RNA 98.0 6.5E-05 1.4E-09 72.1 11.0 91 193-295 14-107 (262)
407 TIGR01444 fkbM_fam methyltrans 97.9 2.5E-05 5.4E-10 67.6 7.1 59 59-123 1-59 (143)
408 TIGR03439 methyl_EasF probable 97.9 9.5E-05 2.1E-09 72.3 11.7 109 203-316 68-197 (319)
409 COG0357 GidB Predicted S-adeno 97.9 2.2E-05 4.8E-10 71.8 6.7 114 14-137 26-142 (215)
410 PF01728 FtsJ: FtsJ-like methy 97.9 1.1E-05 2.3E-10 73.0 4.5 90 212-317 24-140 (181)
411 KOG1331|consensus 97.9 1.1E-05 2.4E-10 75.5 4.5 96 209-320 43-147 (293)
412 KOG2940|consensus 97.9 2E-05 4.3E-10 71.0 5.9 84 55-147 71-157 (325)
413 PF00891 Methyltransf_2: O-met 97.9 5.6E-05 1.2E-09 71.7 9.3 78 53-146 97-174 (241)
414 PF13679 Methyltransf_32: Meth 97.9 3.9E-05 8.4E-10 66.3 7.4 79 55-136 24-105 (141)
415 TIGR00308 TRM1 tRNA(guanine-26 97.9 3.1E-05 6.8E-10 77.5 7.4 74 58-136 46-120 (374)
416 COG4076 Predicted RNA methylas 97.9 3.2E-05 7E-10 67.5 6.2 69 58-136 34-102 (252)
417 PF03291 Pox_MCEL: mRNA cappin 97.8 9.1E-05 2E-09 73.0 9.4 106 34-141 37-156 (331)
418 TIGR01444 fkbM_fam methyltrans 97.8 6.9E-05 1.5E-09 64.8 7.7 58 214-277 1-58 (143)
419 PF13679 Methyltransf_32: Meth 97.8 0.00023 5E-09 61.4 10.8 104 210-316 24-131 (141)
420 COG0500 SmtA SAM-dependent met 97.8 0.00029 6.4E-09 61.3 11.8 98 215-318 52-157 (257)
421 PRK11760 putative 23S rRNA C24 97.8 0.00013 2.8E-09 70.9 9.9 72 54-140 209-280 (357)
422 TIGR00006 S-adenosyl-methyltra 97.8 7E-05 1.5E-09 72.4 7.9 92 195-295 6-102 (305)
423 PF04816 DUF633: Family of unk 97.8 4.9E-05 1.1E-09 69.6 6.5 76 60-140 1-76 (205)
424 KOG1269|consensus 97.8 3.6E-05 7.8E-10 76.4 6.0 107 204-316 103-215 (364)
425 TIGR00006 S-adenosyl-methyltra 97.8 8.9E-05 1.9E-09 71.7 8.6 88 42-138 8-100 (305)
426 PF04816 DUF633: Family of unk 97.8 0.00011 2.4E-09 67.3 8.7 96 215-315 1-100 (205)
427 KOG2899|consensus 97.8 3.9E-05 8.5E-10 69.9 5.5 50 53-103 55-104 (288)
428 COG4262 Predicted spermidine s 97.8 0.00016 3.5E-09 69.6 9.7 110 209-319 287-410 (508)
429 PRK11933 yebU rRNA (cytosine-C 97.8 9.7E-05 2.1E-09 76.2 8.9 80 53-137 110-190 (470)
430 COG4798 Predicted methyltransf 97.8 7.5E-05 1.6E-09 65.7 6.8 104 209-316 46-166 (238)
431 PF09243 Rsm22: Mitochondrial 97.7 0.00022 4.7E-09 68.8 10.3 99 212-315 34-138 (274)
432 COG4076 Predicted RNA methylas 97.7 6.3E-05 1.4E-09 65.7 5.7 92 213-314 34-133 (252)
433 KOG1975|consensus 97.7 5.2E-05 1.1E-09 71.9 5.4 102 35-141 99-207 (389)
434 COG2521 Predicted archaeal met 97.7 2E-05 4.2E-10 71.4 2.4 79 53-136 131-211 (287)
435 PLN02232 ubiquinone biosynthes 97.7 3.7E-05 8E-10 68.0 4.1 60 85-146 1-60 (160)
436 PF02384 N6_Mtase: N-6 DNA Met 97.7 8.9E-05 1.9E-09 73.2 6.8 93 43-140 35-135 (311)
437 PF13578 Methyltransf_24: Meth 97.7 1.1E-05 2.3E-10 66.0 0.2 95 216-315 1-104 (106)
438 KOG1122|consensus 97.6 0.00036 7.9E-09 68.7 10.2 103 209-316 239-371 (460)
439 PF03059 NAS: Nicotianamine sy 97.6 0.00036 7.8E-09 66.5 9.6 100 212-315 121-229 (276)
440 PF08123 DOT1: Histone methyla 97.6 8.6E-05 1.9E-09 68.0 5.1 91 43-139 31-131 (205)
441 KOG3178|consensus 97.6 0.00019 4E-09 69.6 7.4 90 212-316 178-275 (342)
442 PLN02823 spermine synthase 97.6 0.00015 3.3E-09 71.6 6.9 80 56-137 103-183 (336)
443 COG3897 Predicted methyltransf 97.6 0.00023 5E-09 62.9 6.9 96 210-316 78-178 (218)
444 KOG4589|consensus 97.5 0.00013 2.8E-09 63.8 5.2 97 208-320 66-188 (232)
445 PF09243 Rsm22: Mitochondrial 97.5 0.00024 5.1E-09 68.6 7.7 86 55-145 32-117 (274)
446 COG1889 NOP1 Fibrillarin-like 97.5 0.0009 2E-08 59.6 10.4 113 196-316 60-180 (231)
447 COG2384 Predicted SAM-dependen 97.5 0.00053 1.2E-08 62.1 8.6 83 53-140 13-95 (226)
448 COG2384 Predicted SAM-dependen 97.5 0.0005 1.1E-08 62.2 8.4 85 205-294 10-94 (226)
449 KOG2361|consensus 97.4 0.00019 4.2E-09 65.6 5.3 76 59-141 74-155 (264)
450 PF04672 Methyltransf_19: S-ad 97.4 0.00039 8.5E-09 65.5 7.4 102 213-319 70-193 (267)
451 PF07942 N2227: N2227-like pro 97.4 0.0017 3.6E-08 61.8 11.5 118 198-319 37-204 (270)
452 TIGR02987 met_A_Alw26 type II 97.4 0.00052 1.1E-08 72.8 8.8 94 43-141 13-123 (524)
453 PF05219 DREV: DREV methyltran 97.4 0.00013 2.9E-09 67.9 3.5 74 56-146 94-167 (265)
454 PRK11760 putative 23S rRNA C24 97.4 0.00066 1.4E-08 66.0 8.1 86 209-309 209-296 (357)
455 KOG1709|consensus 97.3 0.0018 3.9E-08 58.2 9.7 98 210-315 100-205 (271)
456 PF06080 DUF938: Protein of un 97.3 0.00081 1.8E-08 60.8 7.5 93 45-143 13-115 (204)
457 KOG2730|consensus 97.3 0.00028 6.1E-09 63.4 4.4 62 211-279 94-155 (263)
458 COG3897 Predicted methyltransf 97.3 0.00034 7.3E-09 61.9 4.8 77 53-140 76-152 (218)
459 KOG1596|consensus 97.3 0.00088 1.9E-08 61.0 7.6 99 208-317 153-262 (317)
460 PF05971 Methyltransf_10: Prot 97.3 0.0023 5E-08 61.6 10.8 86 212-302 103-194 (299)
461 PRK10742 putative methyltransf 97.2 0.0009 1.9E-08 62.4 7.2 89 45-138 77-172 (250)
462 KOG2352|consensus 97.2 0.0033 7.2E-08 63.6 11.5 81 54-142 45-126 (482)
463 PRK10742 putative methyltransf 97.2 0.0014 3E-08 61.1 7.8 93 200-297 77-176 (250)
464 PF12147 Methyltransf_20: Puta 97.1 0.0046 9.9E-08 58.6 10.9 86 56-145 135-224 (311)
465 PF05891 Methyltransf_PK: AdoM 97.1 0.00054 1.2E-08 62.3 4.3 77 56-140 55-132 (218)
466 KOG1269|consensus 97.1 0.00043 9.3E-09 68.9 3.5 100 41-146 95-194 (364)
467 KOG3987|consensus 97.0 0.00012 2.6E-09 65.0 -0.5 109 191-316 91-207 (288)
468 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.0 0.0014 3E-08 63.5 6.6 82 53-139 82-165 (283)
469 COG0421 SpeE Spermidine syntha 97.0 0.0029 6.3E-08 60.8 8.7 78 58-137 78-156 (282)
470 PF03059 NAS: Nicotianamine sy 97.0 0.0028 6E-08 60.5 8.1 80 57-140 121-202 (276)
471 PF05971 Methyltransf_10: Prot 97.0 0.0034 7.3E-08 60.5 8.6 82 57-144 103-191 (299)
472 PF01269 Fibrillarin: Fibrilla 97.0 0.0036 7.7E-08 57.1 8.2 83 53-142 70-155 (229)
473 PF01564 Spermine_synth: Sperm 97.0 0.0016 3.4E-08 61.8 6.2 81 55-137 75-157 (246)
474 COG1064 AdhP Zn-dependent alco 96.9 0.0049 1.1E-07 60.4 9.4 94 208-315 163-258 (339)
475 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.9 0.0019 4.2E-08 60.9 6.1 104 211-316 56-199 (256)
476 PF01795 Methyltransf_5: MraW 96.9 0.003 6.5E-08 61.2 7.5 86 42-136 8-99 (310)
477 PF06962 rRNA_methylase: Putat 96.9 0.0031 6.8E-08 53.5 6.6 79 238-320 1-96 (140)
478 PF05148 Methyltransf_8: Hypot 96.8 0.0023 4.9E-08 57.8 5.8 74 43-141 60-133 (219)
479 COG0275 Predicted S-adenosylme 96.8 0.0035 7.5E-08 59.7 7.2 89 41-137 10-103 (314)
480 PF07091 FmrO: Ribosomal RNA m 96.8 0.0074 1.6E-07 56.2 9.2 112 199-318 93-210 (251)
481 COG0275 Predicted S-adenosylme 96.8 0.0046 1E-07 58.8 7.9 92 195-294 9-105 (314)
482 COG1189 Predicted rRNA methyla 96.8 0.0045 9.8E-08 56.9 7.3 97 210-318 78-180 (245)
483 KOG2352|consensus 96.7 0.0086 1.9E-07 60.7 9.5 101 206-314 42-159 (482)
484 KOG3115|consensus 96.7 0.0061 1.3E-07 54.3 7.3 104 212-316 61-183 (249)
485 PRK00536 speE spermidine synth 96.7 0.0067 1.4E-07 57.7 8.2 93 40-139 55-148 (262)
486 PF01795 Methyltransf_5: MraW 96.7 0.0026 5.6E-08 61.6 5.3 92 195-295 6-103 (310)
487 PF11968 DUF3321: Putative met 96.6 0.0022 4.8E-08 58.2 4.3 82 213-318 53-151 (219)
488 COG0144 Sun tRNA and rRNA cyto 96.6 0.012 2.5E-07 59.1 9.7 81 53-138 153-237 (355)
489 PF01728 FtsJ: FtsJ-like methy 96.6 0.0011 2.3E-08 59.9 2.0 68 56-139 23-100 (181)
490 COG0293 FtsJ 23S rRNA methylas 96.5 0.0091 2E-07 54.1 7.2 71 53-139 42-120 (205)
491 PRK11524 putative methyltransf 96.4 0.0082 1.8E-07 58.3 7.3 62 36-103 191-252 (284)
492 COG1063 Tdh Threonine dehydrog 96.3 0.041 8.9E-07 55.2 11.3 98 209-315 166-268 (350)
493 COG0286 HsdM Type I restrictio 96.2 0.04 8.6E-07 57.7 11.3 124 189-318 166-328 (489)
494 PF01555 N6_N4_Mtase: DNA meth 96.2 0.014 3E-07 54.4 7.1 56 38-99 176-231 (231)
495 KOG0024|consensus 96.2 0.034 7.3E-07 53.5 9.3 98 208-315 166-272 (354)
496 PF01861 DUF43: Protein of unk 96.1 0.13 2.9E-06 47.7 12.9 114 198-319 31-152 (243)
497 PF04445 SAM_MT: Putative SAM- 96.1 0.025 5.3E-07 52.6 8.1 90 46-141 65-162 (234)
498 KOG1501|consensus 96.1 0.011 2.5E-07 58.5 6.0 62 58-125 68-129 (636)
499 COG1189 Predicted rRNA methyla 96.1 0.035 7.6E-07 51.2 8.7 83 45-140 69-154 (245)
500 PF13578 Methyltransf_24: Meth 96.1 0.0013 2.7E-08 53.6 -0.6 75 61-140 1-79 (106)
No 1
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.3e-26 Score=206.84 Aligned_cols=176 Identities=35% Similarity=0.598 Sum_probs=160.9
Q ss_pred cccchhcccccChhHHHHHHhccccccccccccCCCCCCCCcccCCCCcccChHHHHHHHHHHHhccCCCCceEEEeccc
Q psy7834 143 IPEGVRFGHIASPKVESVMRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKDYLKPGAKVLDIGSGS 222 (492)
Q Consensus 143 l~~~L~~~~l~~~~~~~a~~~v~r~~f~~~~~~~~~y~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~ 222 (492)
+.++|+..++.+..+.+++..+||+.|+++.++..+|.|.+++++.++++++|.+.+++++.|. ++++++|||||||+
T Consensus 6 l~~~lr~~~i~~~~v~~A~~~vPRe~FVp~~~~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~--~~~g~~VLEIGtGs 83 (209)
T COG2518 6 LVERLRTEGITDERVLKAFLAVPRELFVPAAYKHLAYEDRALPIGCGQTISAPHMVARMLQLLE--LKPGDRVLEIGTGS 83 (209)
T ss_pred HHHHHHHcCCCcHHHHHHHHhCCHHhccCchhhcccccCCcccCCCCceecCcHHHHHHHHHhC--CCCCCeEEEECCCc
Confidence 4567788889999999999999999999999999999999999999999999999999999997 89999999999999
Q ss_pred cHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEEecCcchhhHHHH
Q psy7834 223 GYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKL 302 (492)
Q Consensus 223 G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~s~~~~~~~~~~~ 302 (492)
||.+..||+..+ +|+++|..++..+.|++|+... +..||.++++|....+++.++||.|++.++...+|+.+
T Consensus 84 GY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~l-----g~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP~~L 155 (209)
T COG2518 84 GYQAAVLARLVG---RVVSIERIEELAEQARRNLETL-----GYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVPEAL 155 (209)
T ss_pred hHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHc-----CCCceEEEECCcccCCCCCCCcCEEEEeeccCCCCHHH
Confidence 999999999975 7999999999999999999986 45689999999999898889999999999999999999
Q ss_pred HHHhccCCeEEEEeCCCc-ceeeeccc
Q psy7834 303 MDQLKPGGVMWFTIGNAE-EMLKNNRR 328 (492)
Q Consensus 303 ~~~L~pgG~l~~~~~~~~-~~~~~~~~ 328 (492)
.++|||||+|++.++... |.+....+
T Consensus 156 l~QL~~gGrlv~PvG~~~~q~l~~~~k 182 (209)
T COG2518 156 LDQLKPGGRLVIPVGSGPAQRLLRITK 182 (209)
T ss_pred HHhcccCCEEEEEEccCCcEEEEEEEE
Confidence 999999999999998433 55544433
No 2
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.94 E-value=5.6e-26 Score=207.85 Aligned_cols=169 Identities=39% Similarity=0.683 Sum_probs=145.1
Q ss_pred cccch-hcccccChhHHHHHHhccccccccccccCCCCCCCCcccCCCCcccChHHHHHHHHHHHhccCCCCceEEEecc
Q psy7834 143 IPEGV-RFGHIASPKVESVMRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKDYLKPGAKVLDIGSG 221 (492)
Q Consensus 143 l~~~L-~~~~l~~~~~~~a~~~v~r~~f~~~~~~~~~y~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG 221 (492)
+.+.+ +.+.++++.+.+++..+||+.|++..+...+|.|.+++++.++++++|.+++.+++.+. +++|.+|||||||
T Consensus 5 lv~~l~~~g~v~~~~v~~A~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L~--l~pg~~VLeIGtG 82 (209)
T PF01135_consen 5 LVDNLIRPGDVTDPRVLDAFRAVPREDFVPPAFRDLAYEDRPLPIGCGQTISAPSMVARMLEALD--LKPGDRVLEIGTG 82 (209)
T ss_dssp HHHHHHHTTSS-SHHHHHHHHHS-GGGCSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTT--C-TT-EEEEES-T
T ss_pred HHHHHHHcCCCCCHHHHHHHHhCCHHHhCchhhhcCCCCCCCeeecceeechHHHHHHHHHHHHh--cCCCCEEEEecCC
Confidence 44555 45559999999999999999999999999999999999999999999999999999997 8999999999999
Q ss_pred ccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEEecCcchhhHHH
Q psy7834 222 SGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFK 301 (492)
Q Consensus 222 ~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~s~~~~~~~~~~ 301 (492)
+||+|..+++.+++.++|+++|+.+.+++.|++++...+ ..|+.++++|....+...++||.|+++.+...+|..
T Consensus 83 sGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~-----~~nv~~~~gdg~~g~~~~apfD~I~v~~a~~~ip~~ 157 (209)
T PF01135_consen 83 SGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG-----IDNVEVVVGDGSEGWPEEAPFDRIIVTAAVPEIPEA 157 (209)
T ss_dssp TSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT-----THSEEEEES-GGGTTGGG-SEEEEEESSBBSS--HH
T ss_pred CcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc-----cCceeEEEcchhhccccCCCcCEEEEeeccchHHHH
Confidence 999999999999888999999999999999999999864 458999999998877778899999999999999999
Q ss_pred HHHHhccCCeEEEEeCC
Q psy7834 302 LMDQLKPGGVMWFTIGN 318 (492)
Q Consensus 302 ~~~~L~pgG~l~~~~~~ 318 (492)
+.+.|++||+|++.+..
T Consensus 158 l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 158 LLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp HHHTEEEEEEEEEEESS
T ss_pred HHHhcCCCcEEEEEEcc
Confidence 99999999999998875
No 3
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.93 E-value=1.4e-24 Score=226.43 Aligned_cols=253 Identities=23% Similarity=0.296 Sum_probs=166.6
Q ss_pred HHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCC
Q psy7834 43 QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR 122 (492)
Q Consensus 43 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 122 (492)
...+++.+ ...++++|||+|||+|.++..+++.. .+|+|+|++++|++.+++.... . .+++++++|+.
T Consensus 26 ~~~il~~l--~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~~--~-----~~i~~~~~d~~ 93 (475)
T PLN02336 26 RPEILSLL--PPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESINGH--Y-----KNVKFMCADVT 93 (475)
T ss_pred hhHHHhhc--CccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhcc--C-----CceEEEEeccc
Confidence 35666666 55567899999999999999999986 6999999999999887653321 1 57999999986
Q ss_pred C--CCCCCCcccceeccCccccccc------------chhcccccC------------------------hhHHHHHHhc
Q psy7834 123 K--GYLDEAPYDIIHVGGSIEDIPE------------GVRFGHIAS------------------------PKVESVMRSI 164 (492)
Q Consensus 123 ~--~~~~~~~~D~i~~~~~~~~l~~------------~L~~~~l~~------------------------~~~~~a~~~v 164 (492)
. .++++++||+|+++.+++.+.+ .|++++... ..+.+.+...
T Consensus 94 ~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 173 (475)
T PLN02336 94 SPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKEC 173 (475)
T ss_pred ccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHh
Confidence 3 5567789999999987775433 123333210 0011111110
Q ss_pred c--cc----------------ccccccccCCCCCCCCcccC-----------------------------CCCcccCh-H
Q psy7834 165 D--RR----------------RFIERPIMNNPYWDIPQSLG-----------------------------FGSVMSSP-K 196 (492)
Q Consensus 165 ~--r~----------------~f~~~~~~~~~y~d~~~~~~-----------------------------~~~~~~~~-~ 196 (492)
. +. .|.-+..-.+-|.....++. .+..++.. .
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~f~g~~~~v~~~v~ 253 (475)
T PLN02336 174 HTRDEDGNSFELSLVGCKCIGAYVKNKKNQNQICWLWQKVSSTNDKGFQRFLDNVQYKSSGILRYERVFGEGFVSTGGLE 253 (475)
T ss_pred eeccCCCCEEEEEEEEeechhhhhhccCCcceEEEEEEeecCCcchhHHHHhhhhccccccHHHHHHHhCCCCCCCchHH
Confidence 0 00 00000000000000000000 00000000 0
Q ss_pred HHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccC
Q psy7834 197 VHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDG 276 (492)
Q Consensus 197 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~ 276 (492)
....+++.+. +.++.+|||||||+|..+..+++.. ..+|+|+|+|+.|++.|+++.... ..+++|.++|+
T Consensus 254 ~te~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~------~~~v~~~~~d~ 323 (475)
T PLN02336 254 TTKEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGR------KCSVEFEVADC 323 (475)
T ss_pred HHHHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcC------CCceEEEEcCc
Confidence 1122333332 4678899999999999999999875 458999999999999999886532 24799999998
Q ss_pred CCCCcCCCCccEEEecCcchhhHH------HHHHHhccCCeEEEEeC
Q psy7834 277 REGHAAEGPYDVIYVGGAVHHYPF------KLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 277 ~~~~~~~~~fD~i~s~~~~~~~~~------~~~~~L~pgG~l~~~~~ 317 (492)
...+.++++||+|+|..+++|+++ ++.++|||||++++...
T Consensus 324 ~~~~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 324 TKKTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred ccCCCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 776666678999999999988763 88999999999999753
No 4
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.92 E-value=2.9e-24 Score=199.16 Aligned_cols=170 Identities=37% Similarity=0.598 Sum_probs=152.8
Q ss_pred cccch-hcccccChhHHHHHHhccccccccccccCCCCCCCCcccCCCCcccChHHHHHHHHHHHhccCCCCceEEEecc
Q psy7834 143 IPEGV-RFGHIASPKVESVMRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKDYLKPGAKVLDIGSG 221 (492)
Q Consensus 143 l~~~L-~~~~l~~~~~~~a~~~v~r~~f~~~~~~~~~y~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG 221 (492)
+.+.+ +.+.+++..+.+++..+||+.|+|......+|.|.+++++.++++++|.+.+.+++.+. +.++.+|||||||
T Consensus 9 ~v~~l~~~~~v~~~~v~~a~~~v~R~~fvp~~~~~~ay~d~~~~~~~g~~~~~p~~~~~~~~~l~--~~~g~~VLdIG~G 86 (212)
T PRK13942 9 VIEELIREGYIKSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTISAIHMVAIMCELLD--LKEGMKVLEIGTG 86 (212)
T ss_pred HHHHHHhcCCCCCHHHHHHHHcCCHhhcCCchhhhcCcCCCCccCCCCCEeCcHHHHHHHHHHcC--CCCcCEEEEECCc
Confidence 33444 77779999999999999999999998888899999999999999999999999999886 7889999999999
Q ss_pred ccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEEecCcchhhHHH
Q psy7834 222 SGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFK 301 (492)
Q Consensus 222 ~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~s~~~~~~~~~~ 301 (492)
+|+++..+++..++.++|+++|+++++++.|+++++..+ ..+++++++|+...+...++||+|++....++++..
T Consensus 87 sG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g-----~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~~~~~ 161 (212)
T PRK13942 87 SGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG-----YDNVEVIVGDGTLGYEENAPYDRIYVTAAGPDIPKP 161 (212)
T ss_pred ccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCeEEEECCcccCCCcCCCcCEEEECCCcccchHH
Confidence 999999999988777899999999999999999998753 457999999987766667899999999999999999
Q ss_pred HHHHhccCCeEEEEeCCC
Q psy7834 302 LMDQLKPGGVMWFTIGNA 319 (492)
Q Consensus 302 ~~~~L~pgG~l~~~~~~~ 319 (492)
+.+.|||||+|++..+..
T Consensus 162 l~~~LkpgG~lvi~~~~~ 179 (212)
T PRK13942 162 LIEQLKDGGIMVIPVGSY 179 (212)
T ss_pred HHHhhCCCcEEEEEEcCC
Confidence 999999999999977543
No 5
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.92 E-value=9.8e-24 Score=194.78 Aligned_cols=165 Identities=34% Similarity=0.540 Sum_probs=147.0
Q ss_pred hcccccChhHHHHHHhccccccccccccCCCCCCCCcccCCCCcccChHHHHHHHHHHHhccCCCCceEEEeccccHHHH
Q psy7834 148 RFGHIASPKVESVMRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTA 227 (492)
Q Consensus 148 ~~~~l~~~~~~~a~~~v~r~~f~~~~~~~~~y~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~ 227 (492)
+.+.+++..+.+++..+||+.|++..++..+|.+.+.++..+.+++.|.+.+.+++.+. +.++.+|||+|||+|+.+.
T Consensus 11 ~~~~v~~~~v~~a~~~vpR~~fv~~~~~~~ay~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VLDiG~GsG~~~~ 88 (205)
T PRK13944 11 REGIIKSERVKKAMLSVPREEFVMPEYRMMAYEDRPLPLFAGATISAPHMVAMMCELIE--PRPGMKILEVGTGSGYQAA 88 (205)
T ss_pred HcCCcCCHHHHHHHHhCCHhHcCChhHHhcCccCCCcccCCCCEechHHHHHHHHHhcC--CCCCCEEEEECcCccHHHH
Confidence 55668899999999999999999999888999999999999999999999988888885 6788999999999999999
Q ss_pred HHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEEecCcchhhHHHHHHHhc
Q psy7834 228 CMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQLK 307 (492)
Q Consensus 228 ~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~s~~~~~~~~~~~~~~L~ 307 (492)
.+++..++.++|+++|++++|++.|++++..++ ...+++++.+|+.+.+...++||+|+++.+.+++++++.++|+
T Consensus 89 ~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~----~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~~~l~~~L~ 164 (205)
T PRK13944 89 VCAEAIERRGKVYTVEIVKELAIYAAQNIERLG----YWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIPSALVRQLK 164 (205)
T ss_pred HHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCcEEEEECCcccCCccCCCccEEEEccCcchhhHHHHHhcC
Confidence 999987667899999999999999999998753 1236899999997765556789999999999999999999999
Q ss_pred cCCeEEEEeCC
Q psy7834 308 PGGVMWFTIGN 318 (492)
Q Consensus 308 pgG~l~~~~~~ 318 (492)
|||+|++....
T Consensus 165 ~gG~lvi~~~~ 175 (205)
T PRK13944 165 DGGVLVIPVEE 175 (205)
T ss_pred cCcEEEEEEcC
Confidence 99999997654
No 6
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.91 E-value=2.4e-25 Score=195.31 Aligned_cols=208 Identities=23% Similarity=0.390 Sum_probs=155.3
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccE
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDV 288 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 288 (492)
+.+..+|.|+|||+|..|..|++++ |.+.++|+|.|++|++.|++++ ++++|..+|+.+ +.++.++|+
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rl----------p~~~f~~aDl~~-w~p~~~~dl 95 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRL----------PDATFEEADLRT-WKPEQPTDL 95 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhC----------CCCceecccHhh-cCCCCccch
Confidence 4567899999999999999999999 8999999999999999998764 468999999965 667789999
Q ss_pred EEecCcchhhHH------HHHHHhccCCeEEEEeCCCcceeeeccccCccceeeeeeccccCcchheecccceeeecccc
Q psy7834 289 IYVGGAVHHYPF------KLMDQLKPGGVMWFTIGNAEEMLKNNRRTESNLAVVKAHKKDHGEWEEEFMGRLWRLPALAS 362 (492)
Q Consensus 289 i~s~~~~~~~~~------~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (492)
+|+|+++||+|+ ++...|.|||.|.++++..-++. ++. .+ ....+...|...+.+......
T Consensus 96 lfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~dep-------sH~-~m-r~~A~~~p~~~~l~~~~~~r~---- 162 (257)
T COG4106 96 LFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEP-------SHR-LM-RETADEAPFAQELGGRGLTRA---- 162 (257)
T ss_pred hhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCch-------hHH-HH-HHHHhcCchhhhhCccccccC----
Confidence 999999999997 77899999999999876543221 221 11 113344567776655433211
Q ss_pred hhhhhhccCCCCcccchhHHHHHHHHHHh-c---cCCCCeEEEEecCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy7834 363 VEEQKYWYHPNGFYDDLDVHAQALEILKD-Y---LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438 (492)
Q Consensus 363 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~-~---l~~g~~vld~g~g~G~~~~~~a~~~g~~~~v~a~d~~~~~~~~a~~ 438 (492)
....++.||+.+.....-+++|++ | +...+.|+||-+||| +.+++..+.. +....|++.+..
T Consensus 163 -----~v~s~a~Yy~lLa~~~~rvDiW~T~Y~h~l~~a~aIvdWvkgTg-LrP~L~~L~e--------~~~~~FL~~Y~~ 228 (257)
T COG4106 163 -----PLPSPAAYYELLAPLACRVDIWHTTYYHQLPGADAIVDWVKGTG-LRPYLDRLDE--------EERQRFLDRYLA 228 (257)
T ss_pred -----CCCCHHHHHHHhCcccceeeeeeeeccccCCCccchhhheeccc-cceeccccCH--------HHHHHHHHHHHH
Confidence 122344566666655555677775 4 444678999999999 5777765522 556789999999
Q ss_pred hhhhhcCCCCCCceeeee
Q psy7834 439 SMHTYYPNLMEGGRVQFT 456 (492)
Q Consensus 439 ~l~~~~~~~~~~~~v~~~ 456 (492)
+|.++||+. .||+|+++
T Consensus 229 ~l~~aYP~~-~dGr~ll~ 245 (257)
T COG4106 229 LLAEAYPPR-ADGRVLLA 245 (257)
T ss_pred HHHHhCCCc-cCCcEEee
Confidence 999999997 55677653
No 7
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.90 E-value=7e-23 Score=190.82 Aligned_cols=170 Identities=36% Similarity=0.624 Sum_probs=151.2
Q ss_pred ccccch-hcccccChhHHHHHHhccccccccccccCCCCCCCCcccCCCCcccChHHHHHHHHHHHhccCCCCceEEEec
Q psy7834 142 DIPEGV-RFGHIASPKVESVMRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKDYLKPGAKVLDIGS 220 (492)
Q Consensus 142 ~l~~~L-~~~~l~~~~~~~a~~~v~r~~f~~~~~~~~~y~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGc 220 (492)
++.+.+ +.+.+++..+..++..+||+.|++..+...+|.+.+.+++.+.+++.|.+.+.+++.+. +.++.+|||+||
T Consensus 9 ~~v~~~~~~~~v~~~~v~~a~~~v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VLDiG~ 86 (215)
T TIGR00080 9 ALIDKLINEGYIKSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLE--LKPGMKVLEIGT 86 (215)
T ss_pred HHHHHHHhcCCcCCHHHHHHHHhCChhhhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhC--CCCcCEEEEECC
Confidence 444555 55668999999999999999999998888899999999999999999999999999886 788999999999
Q ss_pred cccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEEecCcchhhHH
Q psy7834 221 GSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPF 300 (492)
Q Consensus 221 G~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~s~~~~~~~~~ 300 (492)
|+|+++..+++..++.++|+++|+++++++.|++++...+ ..+++++.+|+.+.+...++||+|++.....++++
T Consensus 87 GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g-----~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~~ 161 (215)
T TIGR00080 87 GSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG-----LDNVIVIVGDGTQGWEPLAPYDRIYVTAAGPKIPE 161 (215)
T ss_pred CccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC-----CCCeEEEECCcccCCcccCCCCEEEEcCCcccccH
Confidence 9999999999998667889999999999999999998853 46899999998765555578999999999999999
Q ss_pred HHHHHhccCCeEEEEeCC
Q psy7834 301 KLMDQLKPGGVMWFTIGN 318 (492)
Q Consensus 301 ~~~~~L~pgG~l~~~~~~ 318 (492)
.+.+.|+|||++++..+.
T Consensus 162 ~~~~~L~~gG~lv~~~~~ 179 (215)
T TIGR00080 162 ALIDQLKEGGILVMPVGE 179 (215)
T ss_pred HHHHhcCcCcEEEEEEcC
Confidence 999999999999997754
No 8
>KOG1661|consensus
Probab=99.90 E-value=7e-23 Score=179.20 Aligned_cols=189 Identities=42% Similarity=0.730 Sum_probs=166.2
Q ss_pred ccccccch-hcccccChhHHHHHHhccccccccccccCCCCCCCCcccCCCCcccChHHHHHHHHHHHhccCCCCceEEE
Q psy7834 140 IEDIPEGV-RFGHIASPKVESVMRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKDYLKPGAKVLDI 218 (492)
Q Consensus 140 ~~~l~~~L-~~~~l~~~~~~~a~~~v~r~~f~~~~~~~~~y~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDi 218 (492)
.+++.+.| +.+.++.+.+.+++..++|..|.|...++++|.+.|+++|.+.+++.|++++.+++.|..++.||.+.||+
T Consensus 10 n~~LId~L~~~~~Ir~~~v~~A~~a~dR~dy~p~~~~~n~y~d~pq~~G~n~~iSAp~mha~~le~L~~~L~pG~s~Ldv 89 (237)
T KOG1661|consen 10 NDDLIDNLRENKIIRTRRVEQAMRATDRSDYAPRSERTNPYMDSPQKIGYNLTISAPHMHATALEYLDDHLQPGASFLDV 89 (237)
T ss_pred hHHHHHHHHhcchhHHHHHHHHHHhhchhhccccccccCCCCCCccccCCceEEcchHHHHHHHHHHHHhhccCcceeec
Confidence 44677777 66778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccHHHHHHHHHhCCCCeE-EEEeCCHHHHHHHHHHHHhhC-----CCCCCCCcEEEEEccCCCCCcCCCCccEEEec
Q psy7834 219 GSGSGYLTACMAHMVGPTGKV-YAVEHIEDLVAQANKSMHTYY-----PNLMEGGRVQFVDGDGREGHAAEGPYDVIYVG 292 (492)
Q Consensus 219 GcG~G~~~~~la~~~~~~~~v-~giD~s~~~l~~a~~~~~~~~-----~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~s~ 292 (492)
|+|||+++..+++.+++.+.+ +|||.-++.++.+++|+...- .......++.++.+|....+.+..+||.|+++
T Consensus 90 GsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~YDaIhvG 169 (237)
T KOG1661|consen 90 GSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPYDAIHVG 169 (237)
T ss_pred CCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCcceEEEc
Confidence 999999999999888777654 999999999999999988753 12233567899999999988899999999999
Q ss_pred CcchhhHHHHHHHhccCCeEEEEeCCCc--ceeeeccc
Q psy7834 293 GAVHHYPFKLMDQLKPGGVMWFTIGNAE--EMLKNNRR 328 (492)
Q Consensus 293 ~~~~~~~~~~~~~L~pgG~l~~~~~~~~--~~~~~~~~ 328 (492)
++...+|.++...|+|||++++..++.+ |.+....+
T Consensus 170 Aaa~~~pq~l~dqL~~gGrllip~~~~~~~q~~~~~dk 207 (237)
T KOG1661|consen 170 AAASELPQELLDQLKPGGRLLIPVGQDGGTQYLRQIDK 207 (237)
T ss_pred cCccccHHHHHHhhccCCeEEEeecccCceeEEEeecc
Confidence 9999999999999999999999887543 55554433
No 9
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.85 E-value=2e-20 Score=174.12 Aligned_cols=166 Identities=33% Similarity=0.548 Sum_probs=147.3
Q ss_pred ccccchhcccccChhHHHHHHhccccccccccccCCCCCCCCcccCCCCcccChHHHHHHHHHHHhccCCCCceEEEecc
Q psy7834 142 DIPEGVRFGHIASPKVESVMRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKDYLKPGAKVLDIGSG 221 (492)
Q Consensus 142 ~l~~~L~~~~l~~~~~~~a~~~v~r~~f~~~~~~~~~y~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG 221 (492)
.+.++|+..++.++.+.+++..++|+.|+|+.+....|.+.+.+++.+..+++|.+.+.+++.+. +.++.+|||+|||
T Consensus 11 ~~v~~l~~~~~~~~~~~~a~~~~~r~~f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~--~~~~~~VLeiG~G 88 (212)
T PRK00312 11 RLVLRLRAEGILDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLE--LKPGDRVLEIGTG 88 (212)
T ss_pred HHHHHHHHcCCCCHHHHHHHHcCCHhHcCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcC--CCCCCEEEEECCC
Confidence 45667777788999999999999999999988888899999999999999999999999988775 6788999999999
Q ss_pred ccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEEecCcchhhHHH
Q psy7834 222 SGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFK 301 (492)
Q Consensus 222 ~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~s~~~~~~~~~~ 301 (492)
+|+++..+++.. ++|+++|+++++++.|++++.+.+ ..+++++.+|..+.+...++||+|++....++++..
T Consensus 89 sG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~~~ 160 (212)
T PRK00312 89 SGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLG-----LHNVSVRHGDGWKGWPAYAPFDRILVTAAAPEIPRA 160 (212)
T ss_pred ccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCC-----CCceEEEECCcccCCCcCCCcCEEEEccCchhhhHH
Confidence 999999888875 379999999999999999998753 456999999986655555789999999999999999
Q ss_pred HHHHhccCCeEEEEeC
Q psy7834 302 LMDQLKPGGVMWFTIG 317 (492)
Q Consensus 302 ~~~~L~pgG~l~~~~~ 317 (492)
+.+.|+|||++++..+
T Consensus 161 l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 161 LLEQLKEGGILVAPVG 176 (212)
T ss_pred HHHhcCCCcEEEEEEc
Confidence 9999999999999876
No 10
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3.2e-21 Score=172.37 Aligned_cols=133 Identities=38% Similarity=0.603 Sum_probs=123.5
Q ss_pred CcccCCCCCCC----CCccccccccccCCcccCCccccccchhhhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHH
Q psy7834 1 MLAVDRGHYTT----WRPYANCITNIGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAW 76 (492)
Q Consensus 1 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~ 76 (492)
|++|||..|+| ..||.|+++|+..+++++.|.+ .++|++.| .++++++|||||||+||.+..||+
T Consensus 24 ~~~vPRe~FVp~~~~~~AY~d~~lpi~~gqtis~P~~---------vA~m~~~L--~~~~g~~VLEIGtGsGY~aAvla~ 92 (209)
T COG2518 24 FLAVPRELFVPAAYKHLAYEDRALPIGCGQTISAPHM---------VARMLQLL--ELKPGDRVLEIGTGSGYQAAVLAR 92 (209)
T ss_pred HHhCCHHhccCchhhcccccCCcccCCCCceecCcHH---------HHHHHHHh--CCCCCCeEEEECCCchHHHHHHHH
Confidence 57899999999 8999999999999999999999 89999999 999999999999999999999999
Q ss_pred HhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccceeccCcccccccch----hcccc
Q psy7834 77 CVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEGV----RFGHI 152 (492)
Q Consensus 77 ~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~~l~~~L----~~~~l 152 (492)
.+ ++|+++|+.+...+.|+++++..|+ .||.++++|+.....+..+||.|+.+.+..++++.| +.++.
T Consensus 93 l~---~~V~siEr~~~L~~~A~~~L~~lg~-----~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGr 164 (209)
T COG2518 93 LV---GRVVSIERIEELAEQARRNLETLGY-----ENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVPEALLDQLKPGGR 164 (209)
T ss_pred Hh---CeEEEEEEcHHHHHHHHHHHHHcCC-----CceEEEECCcccCCCCCCCcCEEEEeeccCCCCHHHHHhcccCCE
Confidence 98 6999999999999999999999998 689999999999988889999999999988776654 55553
No 11
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.82 E-value=9.6e-21 Score=173.38 Aligned_cols=131 Identities=37% Similarity=0.647 Sum_probs=111.1
Q ss_pred CcccCCCCCCC----CCccccccccccCCcccCCccccccchhhhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHH
Q psy7834 1 MLAVDRGHYTT----WRPYANCITNIGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAW 76 (492)
Q Consensus 1 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~ 76 (492)
|++|||+.|+| ..+|+|.++|+..+++++.|.+ .+++++.| .+++|++|||||||+|++|..|++
T Consensus 24 ~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~~is~P~~---------~a~~l~~L--~l~pg~~VLeIGtGsGY~aAlla~ 92 (209)
T PF01135_consen 24 FRAVPREDFVPPAFRDLAYEDRPLPIGCGQTISAPSM---------VARMLEAL--DLKPGDRVLEIGTGSGYQAALLAH 92 (209)
T ss_dssp HHHS-GGGCSSCGGGGGTTSSS-EEEETTEEE--HHH---------HHHHHHHT--TC-TT-EEEEES-TTSHHHHHHHH
T ss_pred HHhCCHHHhCchhhhcCCCCCCCeeecceeechHHHH---------HHHHHHHH--hcCCCCEEEEecCCCcHHHHHHHH
Confidence 68899999999 5999999999999999999999 89999999 899999999999999999999999
Q ss_pred HhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccceeccCcccccccch
Q psy7834 77 CVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEGV 147 (492)
Q Consensus 77 ~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~~l~~~L 147 (492)
.+++.++|++||+++..++.|+++++..++ .|++++++|+........+||.|+++.+..+++..|
T Consensus 93 lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-----~nv~~~~gdg~~g~~~~apfD~I~v~~a~~~ip~~l 158 (209)
T PF01135_consen 93 LVGPVGRVVSVERDPELAERARRNLARLGI-----DNVEVVVGDGSEGWPEEAPFDRIIVTAAVPEIPEAL 158 (209)
T ss_dssp HHSTTEEEEEEESBHHHHHHHHHHHHHHTT-----HSEEEEES-GGGTTGGG-SEEEEEESSBBSS--HHH
T ss_pred hcCccceEEEECccHHHHHHHHHHHHHhcc-----CceeEEEcchhhccccCCCcCEEEEeeccchHHHHH
Confidence 998878999999999999999999998887 799999999988776778999999999888776554
No 12
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.82 E-value=2.2e-19 Score=174.99 Aligned_cols=167 Identities=31% Similarity=0.416 Sum_probs=141.1
Q ss_pred cccchhcccccChhHHHHHHhcccccccccccc-CCCCCCCCccc-CCC---CcccChHHHHHHHHHHHhccCCCCceEE
Q psy7834 143 IPEGVRFGHIASPKVESVMRSIDRRRFIERPIM-NNPYWDIPQSL-GFG---SVMSSPKVHAQALEILKDYLKPGAKVLD 217 (492)
Q Consensus 143 l~~~L~~~~l~~~~~~~a~~~v~r~~f~~~~~~-~~~y~d~~~~~-~~~---~~~~~~~~~~~~~~~l~~~~~~~~~vLD 217 (492)
+.+.++..++.+ .+.+++..+||+.|+|.... ...|.|.++++ ..+ +.++.|.+.+.+++.+. ++++.+|||
T Consensus 10 lv~~l~~~gv~d-~vl~a~~~vpRe~Fvp~~~~~~~aY~D~~l~~~~~g~~~~~~~~p~l~a~ll~~L~--i~~g~~VLD 86 (322)
T PRK13943 10 LFWILKKYGISD-HIAKAFLEVPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKGMRVLE 86 (322)
T ss_pred HHHHHHHcCCcH-HHHHHHHcCCHHHcCCcchhhhhccCCCcccccCCCcccccCCcHHHHHHHHHhcC--CCCCCEEEE
Confidence 445566777777 99999999999999998763 56798988875 444 46678888888888775 678899999
Q ss_pred EeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEEecCcchh
Q psy7834 218 IGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHH 297 (492)
Q Consensus 218 iGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~s~~~~~~ 297 (492)
+|||+|+++..+++..+..++|+++|++++|++.|+++++..+ ..++.++++|+...+...++||+|++....++
T Consensus 87 IG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g-----~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~~ 161 (322)
T PRK13943 87 IGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG-----IENVIFVCGDGYYGVPEFAPYDVIFVTVGVDE 161 (322)
T ss_pred EeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEeCChhhcccccCCccEEEECCchHH
Confidence 9999999999999987656789999999999999999988753 45799999998765555578999999999999
Q ss_pred hHHHHHHHhccCCeEEEEeC
Q psy7834 298 YPFKLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 298 ~~~~~~~~L~pgG~l~~~~~ 317 (492)
+++.+.+.|+|||++++...
T Consensus 162 ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 162 VPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred hHHHHHHhcCCCCEEEEEeC
Confidence 99999999999999998754
No 13
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.81 E-value=2.3e-18 Score=178.95 Aligned_cols=282 Identities=15% Similarity=0.112 Sum_probs=179.1
Q ss_pred CCccccccccccCCcccCCccccccchhhhHHHHHHHHHHHh----------------------cCCCCeEEEEcCcCcH
Q psy7834 12 WRPYANCITNIGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEE----------------------LTEGKKVLDIGSGNGY 69 (492)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------------------~~~~~~vLDiG~G~G~ 69 (492)
+..|.+..+-++.+..+.+|++ +.+...+++.+... ..++.+|||+|||+|.
T Consensus 78 ~~~F~g~~f~V~~~VLIPRpeT------E~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~ 151 (506)
T PRK01544 78 VKEFYSREFIVNKHVLIPRSDT------EVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGC 151 (506)
T ss_pred cCEEcCcEEEeCCCcccCCCcH------HHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhH
Confidence 5566667788899999999998 33444444333100 1134689999999999
Q ss_pred HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccceeccCccc------cc
Q psy7834 70 FTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIE------DI 143 (492)
Q Consensus 70 ~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~------~l 143 (492)
+++.++... +..+|+++|+|+.+++.|+++++.+++. ++++++++|+.+. .+.++||+|+++-..- .+
T Consensus 152 iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~----~~v~~~~~D~~~~-~~~~~fDlIvsNPPYi~~~~~~~l 225 (506)
T PRK01544 152 IAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVT----DRIQIIHSNWFEN-IEKQKFDFIVSNPPYISHSEKSEM 225 (506)
T ss_pred HHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCc----cceeeeecchhhh-CcCCCccEEEECCCCCCchhhhhc
Confidence 999999876 4589999999999999999999888773 5799999997653 3356899999974321 00
Q ss_pred c-c-----------------------------chhcccccC--------hhHHHHHHhccccccccccccCCCCCCCC--
Q psy7834 144 P-E-----------------------------GVRFGHIAS--------PKVESVMRSIDRRRFIERPIMNNPYWDIP-- 183 (492)
Q Consensus 144 ~-~-----------------------------~L~~~~l~~--------~~~~~a~~~v~r~~f~~~~~~~~~y~d~~-- 183 (492)
. + .|.+++... ..+...+.... |.... ....+...+
T Consensus 226 ~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g---~~~~~-~~~D~~g~~R~ 301 (506)
T PRK01544 226 AIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHG---YNIES-VYKDLQGHSRV 301 (506)
T ss_pred CchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcC---CCceE-EEecCCCCceE
Confidence 0 0 001111100 01111111100 00000 001111111
Q ss_pred -------cccCCCCc----ccChHHHHHHHHHH-Hh-------c-cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEe
Q psy7834 184 -------QSLGFGSV----MSSPKVHAQALEIL-KD-------Y-LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 243 (492)
Q Consensus 184 -------~~~~~~~~----~~~~~~~~~~~~~l-~~-------~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD 243 (492)
...+++.. ++. . ....++.+ .. . -..+..+||||||.|.++..+|+.. |...++|+|
T Consensus 302 v~~~~~~~~rs~~rr~g~~~~~-~-q~~~~e~~~p~~~i~~eklf~~~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE 378 (506)
T PRK01544 302 ILISPINLNRSYARRIGKSLSG-V-QQNLLDNELPKYLFSKEKLVNEKRKVFLEIGFGMGEHFINQAKMN-PDALFIGVE 378 (506)
T ss_pred EEeccccCCcceeccCCCCCCH-H-HHHHHHhhhhhhCCCHHHhCCCCCceEEEECCCchHHHHHHHHhC-CCCCEEEEE
Confidence 00111111 111 1 11111111 11 1 1235689999999999999999986 788999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCC--CcCCCCccEEEecCcchhhH--------------HHHHHHhc
Q psy7834 244 HIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREG--HAAEGPYDVIYVGGAVHHYP--------------FKLMDQLK 307 (492)
Q Consensus 244 ~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~i~s~~~~~~~~--------------~~~~~~L~ 307 (492)
++...+..|.++.... +..|+.++..|+... ..+++++|.|+.+..-+|-. +.+.+.||
T Consensus 379 ~~~~~~~~~~~~~~~~-----~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk 453 (506)
T PRK01544 379 VYLNGVANVLKLAGEQ-----NITNFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLK 453 (506)
T ss_pred eeHHHHHHHHHHHHHc-----CCCeEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcC
Confidence 9999999888877664 356888888886422 24567899999988665432 37889999
Q ss_pred cCCeEEEEeC
Q psy7834 308 PGGVMWFTIG 317 (492)
Q Consensus 308 pgG~l~~~~~ 317 (492)
|||.+.+.+.
T Consensus 454 ~gG~i~~~TD 463 (506)
T PRK01544 454 DNGNLVFASD 463 (506)
T ss_pred CCCEEEEEcC
Confidence 9999999754
No 14
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.81 E-value=1.3e-19 Score=168.10 Aligned_cols=130 Identities=38% Similarity=0.637 Sum_probs=117.1
Q ss_pred CcccCCCCCCC----CCccccccccccCCcccCCccccccchhhhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHH
Q psy7834 1 MLAVDRGHYTT----WRPYANCITNIGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAW 76 (492)
Q Consensus 1 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~ 76 (492)
|+.|||+.|+| ..+|.|.+++++.++.++.|.+ .+++++.+ .+.++.+|||+|||+|+++..+++
T Consensus 28 ~~~v~R~~fvp~~~~~~ay~d~~~~~~~g~~~~~p~~---------~~~~~~~l--~~~~g~~VLdIG~GsG~~t~~la~ 96 (212)
T PRK13942 28 LLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTISAIHM---------VAIMCELL--DLKEGMKVLEIGTGSGYHAAVVAE 96 (212)
T ss_pred HHcCCHhhcCCchhhhcCcCCCCccCCCCCEeCcHHH---------HHHHHHHc--CCCCcCEEEEECCcccHHHHHHHH
Confidence 68899999999 5799999999999999999988 89999988 888999999999999999999999
Q ss_pred HhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccceeccCcccccccc
Q psy7834 77 CVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEG 146 (492)
Q Consensus 77 ~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~~l~~~ 146 (492)
..++.++|+++|+++++++.|++++++.++ .+++++++|+...+.+..+||+|+++.+.+++++.
T Consensus 97 ~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-----~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~~~~~ 161 (212)
T PRK13942 97 IVGKSGKVVTIERIPELAEKAKKTLKKLGY-----DNVEVIVGDGTLGYEENAPYDRIYVTAAGPDIPKP 161 (212)
T ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCeEEEECCcccCCCcCCCcCEEEECCCcccchHH
Confidence 987668999999999999999999998887 68999999998876667899999998877665543
No 15
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.79 E-value=1.6e-18 Score=181.10 Aligned_cols=105 Identities=25% Similarity=0.403 Sum_probs=82.2
Q ss_pred HHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCC-
Q psy7834 200 QALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGRE- 278 (492)
Q Consensus 200 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~- 278 (492)
.+++.+. ..++.+|||+|||+|.++..+++.. .+|+|+|+|+.|++.+++... ..++++++++|+..
T Consensus 28 ~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~-------~~~~i~~~~~d~~~~ 95 (475)
T PLN02336 28 EILSLLP--PYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESING-------HYKNVKFMCADVTSP 95 (475)
T ss_pred HHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhc-------cCCceEEEEeccccc
Confidence 3444443 3457799999999999999999874 379999999999998765322 13578999999853
Q ss_pred -CCcCCCCccEEEecCcchhhHH--------HHHHHhccCCeEEEEe
Q psy7834 279 -GHAAEGPYDVIYVGGAVHHYPF--------KLMDQLKPGGVMWFTI 316 (492)
Q Consensus 279 -~~~~~~~fD~i~s~~~~~~~~~--------~~~~~L~pgG~l~~~~ 316 (492)
.+.++++||+|+++.+++++++ ++.++|||||++++..
T Consensus 96 ~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 96 DLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred ccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 3445678999999999988753 6789999999999864
No 16
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.78 E-value=7.2e-19 Score=162.33 Aligned_cols=131 Identities=31% Similarity=0.479 Sum_probs=114.0
Q ss_pred CcccCCCCCCC----CCccccccccccCCcccCCccccccchhhhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHH
Q psy7834 1 MLAVDRGHYTT----WRPYANCITNIGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAW 76 (492)
Q Consensus 1 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~ 76 (492)
|++|||+.|+| ..+|+|.++|+..++.++.|.. .+.+++.+ .+.++++|||+|||+|+.+..+++
T Consensus 24 ~~~vpR~~fv~~~~~~~ay~d~~~~~~~~~~~~~p~~---------~~~~~~~l--~~~~~~~VLDiG~GsG~~~~~la~ 92 (205)
T PRK13944 24 MLSVPREEFVMPEYRMMAYEDRPLPLFAGATISAPHM---------VAMMCELI--EPRPGMKILEVGTGSGYQAAVCAE 92 (205)
T ss_pred HHhCCHhHcCChhHHhcCccCCCcccCCCCEechHHH---------HHHHHHhc--CCCCCCEEEEECcCccHHHHHHHH
Confidence 68899999999 4799999999988888988877 78888888 788899999999999999999999
Q ss_pred HhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccceeccCcccccccc
Q psy7834 77 CVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEG 146 (492)
Q Consensus 77 ~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~~l~~~ 146 (492)
..++.++|+++|++++|++.|++++.+.++. ++++++++|+.+......+||+|+++.+.+++++.
T Consensus 93 ~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~----~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~~~ 158 (205)
T PRK13944 93 AIERRGKVYTVEIVKELAIYAAQNIERLGYW----GVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIPSA 158 (205)
T ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----CcEEEEECCcccCCccCCCccEEEEccCcchhhHH
Confidence 8765689999999999999999999887763 56999999998765556799999999887765543
No 17
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.78 E-value=1.2e-18 Score=161.04 Aligned_cols=101 Identities=28% Similarity=0.472 Sum_probs=91.9
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccE
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDV 288 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 288 (492)
..+|.+|||||||||.++..+++..+ .++|+|+|+|+.|++.|++++...+ ..+++|+++|++++|+++++||+
T Consensus 49 ~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~-----~~~i~fv~~dAe~LPf~D~sFD~ 122 (238)
T COG2226 49 IKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKG-----VQNVEFVVGDAENLPFPDNSFDA 122 (238)
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccC-----ccceEEEEechhhCCCCCCccCE
Confidence 44899999999999999999999986 8999999999999999999988743 23499999999999999999999
Q ss_pred EEecCcchhhHH------HHHHHhccCCeEEEE
Q psy7834 289 IYVGGAVHHYPF------KLMDQLKPGGVMWFT 315 (492)
Q Consensus 289 i~s~~~~~~~~~------~~~~~L~pgG~l~~~ 315 (492)
|.+...++++++ |++|+|||||++++.
T Consensus 123 vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 123 VTISFGLRNVTDIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred EEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEE
Confidence 999999988875 999999999998874
No 18
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.76 E-value=3.1e-18 Score=159.51 Aligned_cols=129 Identities=39% Similarity=0.634 Sum_probs=113.8
Q ss_pred CcccCCCCCCC----CCccccccccccCCcccCCccccccchhhhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHH
Q psy7834 1 MLAVDRGHYTT----WRPYANCITNIGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAW 76 (492)
Q Consensus 1 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~ 76 (492)
|++|||+.|+| ..+|.+.+++.+.++.++.|.+ .+.+++.+ .+.++.+|||+|||+|+++..+++
T Consensus 29 ~~~v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~---------~~~~~~~l--~~~~~~~VLDiG~GsG~~a~~la~ 97 (215)
T TIGR00080 29 LLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHM---------VAMMTELL--ELKPGMKVLEIGTGSGYQAAVLAE 97 (215)
T ss_pred HHhCChhhhCCchhHhhCcCCCCcccCCCCEechHHH---------HHHHHHHh--CCCCcCEEEEECCCccHHHHHHHH
Confidence 67899999999 5899999999888888888877 78899988 788999999999999999999999
Q ss_pred HhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccceeccCccccccc
Q psy7834 77 CVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 145 (492)
Q Consensus 77 ~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~~l~~ 145 (492)
..+++++|+++|+++++++.|+++++++++ .+++++++|+.+......+||+|++......+++
T Consensus 98 ~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-----~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~~ 161 (215)
T TIGR00080 98 IVGRDGLVVSIERIPELAEKAERRLRKLGL-----DNVIVIVGDGTQGWEPLAPYDRIYVTAAGPKIPE 161 (215)
T ss_pred HhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----CCeEEEECCcccCCcccCCCCEEEEcCCcccccH
Confidence 986667899999999999999999999887 7899999999876555678999999877665543
No 19
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.76 E-value=2.1e-18 Score=161.32 Aligned_cols=109 Identities=28% Similarity=0.527 Sum_probs=81.2
Q ss_pred HHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCC
Q psy7834 200 QALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREG 279 (492)
Q Consensus 200 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 279 (492)
.+++.+. ..+|.+|||+|||||.++..++++.++.++|+|+|+|++|++.|+++....+ ..+++++++|++++
T Consensus 38 ~~~~~~~--~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~-----~~~i~~v~~da~~l 110 (233)
T PF01209_consen 38 KLIKLLG--LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG-----LQNIEFVQGDAEDL 110 (233)
T ss_dssp HHHHHHT----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-------SEEEEE-BTTB-
T ss_pred HHHhccC--CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC-----CCCeeEEEcCHHHh
Confidence 3444443 6778999999999999999999998888999999999999999999988743 34899999999999
Q ss_pred CcCCCCccEEEecCcchhhHH------HHHHHhccCCeEEEE
Q psy7834 280 HAAEGPYDVIYVGGAVHHYPF------KLMDQLKPGGVMWFT 315 (492)
Q Consensus 280 ~~~~~~fD~i~s~~~~~~~~~------~~~~~L~pgG~l~~~ 315 (492)
+.++++||+|++...++++++ |++|+|||||++++.
T Consensus 111 p~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 111 PFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp -S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEe
Confidence 989999999999999988874 899999999999874
No 20
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.69 E-value=2.3e-16 Score=131.19 Aligned_cols=101 Identities=28% Similarity=0.523 Sum_probs=82.1
Q ss_pred CCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEE
Q psy7834 211 PGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIY 290 (492)
Q Consensus 211 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~ 290 (492)
|+.+|||+|||+|.++..++++. +..+|+|+|+|++|++.|++++...+ ..++++++++|+...+...++||+|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~i~~~~~d~~~~~~~~~~~D~v~ 75 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEG----LSDRITFVQGDAEFDPDFLEPFDLVI 75 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTT----TTTTEEEEESCCHGGTTTSSCEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcC----CCCCeEEEECccccCcccCCCCCEEE
Confidence 57899999999999999999965 67899999999999999999995432 35789999999922233456799999
Q ss_pred ecC-cchhh---------HHHHHHHhccCCeEEEEe
Q psy7834 291 VGG-AVHHY---------PFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 291 s~~-~~~~~---------~~~~~~~L~pgG~l~~~~ 316 (492)
+.. .++++ .+++.+.|+|||++++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 76 CSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp ECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 998 44322 247889999999999853
No 21
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.69 E-value=2.8e-16 Score=150.42 Aligned_cols=107 Identities=23% Similarity=0.301 Sum_probs=90.1
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccE
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDV 288 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 288 (492)
+.++.+|||+|||+|.++..+++..++.++|+|+|+|++|++.|+++...... ....+++++++|+.+.+.++++||+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~--~~~~~i~~~~~d~~~lp~~~~sfD~ 148 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK--SCYKNIEWIEGDATDLPFDDCYFDA 148 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh--ccCCCeEEEEcccccCCCCCCCEeE
Confidence 56789999999999999999998876778999999999999999887542100 0234799999999888778889999
Q ss_pred EEecCcchhhHH------HHHHHhccCCeEEEEeC
Q psy7834 289 IYVGGAVHHYPF------KLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 289 i~s~~~~~~~~~------~~~~~L~pgG~l~~~~~ 317 (492)
|+++.++|++++ ++.++|||||++++...
T Consensus 149 V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 149 ITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred EEEecccccCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 999999988763 89999999999998653
No 22
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.68 E-value=1.6e-16 Score=147.90 Aligned_cols=127 Identities=32% Similarity=0.514 Sum_probs=110.7
Q ss_pred CcccCCCCCCC----CCccccccccccCCcccCCccccccchhhhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHH
Q psy7834 1 MLAVDRGHYTT----WRPYANCITNIGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAW 76 (492)
Q Consensus 1 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~ 76 (492)
|+.|||..|+| ..+|.+..+|++.+++++.|.. .+++++.+ .+.++.+|||+|||+|+++..+++
T Consensus 30 ~~~~~r~~f~p~~~~~~ay~d~~~~~~~~~~~~~p~~---------~~~l~~~l--~~~~~~~VLeiG~GsG~~t~~la~ 98 (212)
T PRK00312 30 IEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYM---------VARMTELL--ELKPGDRVLEIGTGSGYQAAVLAH 98 (212)
T ss_pred HHcCCHhHcCCchHHhcCccCCCccCCCCCeeCcHHH---------HHHHHHhc--CCCCCCEEEEECCCccHHHHHHHH
Confidence 57899999999 6789999999999999999988 78888888 788899999999999999999998
Q ss_pred HhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccceeccCcccccccc
Q psy7834 77 CVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEG 146 (492)
Q Consensus 77 ~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~~l~~~ 146 (492)
.. .+|+++|+++++++.|++++++.++ .+++++++|..+.....++||+|++....+.+++.
T Consensus 99 ~~---~~v~~vd~~~~~~~~a~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~~~ 160 (212)
T PRK00312 99 LV---RRVFSVERIKTLQWEAKRRLKQLGL-----HNVSVRHGDGWKGWPAYAPFDRILVTAAAPEIPRA 160 (212)
T ss_pred Hh---CEEEEEeCCHHHHHHHHHHHHHCCC-----CceEEEECCcccCCCcCCCcCEEEEccCchhhhHH
Confidence 86 5899999999999999999988887 67999999987654445789999998776655443
No 23
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.68 E-value=4.5e-15 Score=154.42 Aligned_cols=247 Identities=17% Similarity=0.171 Sum_probs=146.8
Q ss_pred CCCCCCCCcccCCCCcccChHHHHHH---HHHHHhc----------------------cCCCCceEEEeccccHHHHHHH
Q psy7834 176 NNPYWDIPQSLGFGSVMSSPKVHAQA---LEILKDY----------------------LKPGAKVLDIGSGSGYLTACMA 230 (492)
Q Consensus 176 ~~~y~d~~~~~~~~~~~~~~~~~~~~---~~~l~~~----------------------~~~~~~vLDiGcG~G~~~~~la 230 (492)
...|+...+.++.+..|++|++...+ ++.+... ..++.+|||+|||+|.++..++
T Consensus 78 ~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la 157 (506)
T PRK01544 78 VKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLL 157 (506)
T ss_pred cCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHH
Confidence 35678888889999999999765433 3322100 1134689999999999999999
Q ss_pred HHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEEecCcch--------------
Q psy7834 231 HMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVH-------------- 296 (492)
Q Consensus 231 ~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~s~~~~~-------------- 296 (492)
... +..+|+++|+|+.+++.|++|+..++ ...+++++++|+.+.. ..++||+|+||....
T Consensus 158 ~~~-p~~~v~avDis~~al~~A~~N~~~~~----l~~~v~~~~~D~~~~~-~~~~fDlIvsNPPYi~~~~~~~l~~~v~~ 231 (506)
T PRK01544 158 CEL-PNANVIATDISLDAIEVAKSNAIKYE----VTDRIQIIHSNWFENI-EKQKFDFIVSNPPYISHSEKSEMAIETIN 231 (506)
T ss_pred HHC-CCCeEEEEECCHHHHHHHHHHHHHcC----CccceeeeecchhhhC-cCCCccEEEECCCCCCchhhhhcCchhhc
Confidence 876 67899999999999999999988754 2347899999975432 346899999975220
Q ss_pred h------------------hHHHHHHHhccCCeEEEEeCCCc-ceeeeccccCccceeeeeeccccCcchheecccceee
Q psy7834 297 H------------------YPFKLMDQLKPGGVMWFTIGNAE-EMLKNNRRTESNLAVVKAHKKDHGEWEEEFMGRLWRL 357 (492)
Q Consensus 297 ~------------------~~~~~~~~L~pgG~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (492)
+ +..++.+.|+|||.+++..+..+ +........ ..+..+.. ..+...-.+.. ..
T Consensus 232 ~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~-~g~~~~~~-~~D~~g~~R~v-----~~ 304 (506)
T PRK01544 232 YEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLD-HGYNIESV-YKDLQGHSRVI-----LI 304 (506)
T ss_pred cCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHh-cCCCceEE-EecCCCCceEE-----Ee
Confidence 0 11255679999999999887654 111111110 11111111 11111111000 00
Q ss_pred ecccchhhhhhccCCCCcccchh-HHHHH-HHHHHh-------ccCCCC-eEEEEecCccHHHHHHHHHhCCCceEEEEe
Q psy7834 358 PALASVEEQKYWYHPNGFYDDLD-VHAQA-LEILKD-------YLKPGA-KVLDIGSGSGYLTACMAHMVGPTGKVYAVE 427 (492)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~l~~-------~l~~g~-~vld~g~g~G~~~~~~a~~~g~~~~v~a~d 427 (492)
...... .......|. .+. ..... -..+.. ...... .++|+|||.|.....+|... |...++|+|
T Consensus 305 ~~~~~~---rs~~rr~g~--~~~~~q~~~~e~~~p~~~i~~eklf~~~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE 378 (506)
T PRK01544 305 SPINLN---RSYARRIGK--SLSGVQQNLLDNELPKYLFSKEKLVNEKRKVFLEIGFGMGEHFINQAKMN-PDALFIGVE 378 (506)
T ss_pred ccccCC---cceeccCCC--CCCHHHHHHHHhhhhhhCCCHHHhCCCCCceEEEECCCchHHHHHHHHhC-CCCCEEEEE
Confidence 000000 000001110 000 00011 111111 223334 45999999998888888765 899999999
Q ss_pred CCHHHHHHHHHhhh
Q psy7834 428 HIEDLVAQANKSMH 441 (492)
Q Consensus 428 ~~~~~~~~a~~~l~ 441 (492)
....-+..+..++.
T Consensus 379 ~~~~~~~~~~~~~~ 392 (506)
T PRK01544 379 VYLNGVANVLKLAG 392 (506)
T ss_pred eeHHHHHHHHHHHH
Confidence 99877666666543
No 24
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.64 E-value=1.6e-15 Score=133.48 Aligned_cols=103 Identities=29% Similarity=0.547 Sum_probs=86.7
Q ss_pred CCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCc-CCCCccE
Q psy7834 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHA-AEGPYDV 288 (492)
Q Consensus 210 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~ 288 (492)
+++.+|||+|||+|.++..+++..++.++++|+|+|++|++.|+++++..+ .++++|.++|+.+... ..++||+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~-----~~ni~~~~~d~~~l~~~~~~~~D~ 76 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG-----LDNIEFIQGDIEDLPQELEEKFDI 76 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT-----STTEEEEESBTTCGCGCSSTTEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc-----ccccceEEeehhccccccCCCeeE
Confidence 457899999999999999999765678899999999999999999988753 4589999999988431 1278999
Q ss_pred EEecCcchhhHH------HHHHHhccCCeEEEEeC
Q psy7834 289 IYVGGAVHHYPF------KLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 289 i~s~~~~~~~~~------~~~~~L~pgG~l~~~~~ 317 (492)
|++..+++++.+ ++.+.|++||++++...
T Consensus 77 I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 77 IISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp EEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 999999887764 78999999999998653
No 25
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.64 E-value=8.7e-16 Score=123.31 Aligned_cols=89 Identities=29% Similarity=0.543 Sum_probs=76.3
Q ss_pred EEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEEecCcc
Q psy7834 216 LDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAV 295 (492)
Q Consensus 216 LDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~s~~~~ 295 (492)
||+|||+|..+..++++ +..+|+++|+|++|++.++++... .++.++++|....+.++++||+|++..++
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~--------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~ 70 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKN--------EGVSFRQGDAEDLPFPDNSFDVVFSNSVL 70 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTT--------STEEEEESBTTSSSS-TT-EEEEEEESHG
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccc--------cCchheeehHHhCccccccccccccccce
Confidence 89999999999999998 466899999999999999998754 35779999999988889999999999999
Q ss_pred hhhHH------HHHHHhccCCeEEE
Q psy7834 296 HHYPF------KLMDQLKPGGVMWF 314 (492)
Q Consensus 296 ~~~~~------~~~~~L~pgG~l~~ 314 (492)
+|+.+ ++.|+|||||+++|
T Consensus 71 ~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 71 HHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred eeccCHHHHHHHHHHHcCcCeEEeC
Confidence 98853 89999999999986
No 26
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.64 E-value=8.9e-16 Score=141.99 Aligned_cols=98 Identities=23% Similarity=0.455 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecC
Q psy7834 41 FQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGD 120 (492)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 120 (492)
.+++.+++++ ...+|.+|||||||||.++..+++.++ .++|+++|+|++|++.|+++..+.+. .+++|+++|
T Consensus 38 ~Wr~~~i~~~--~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~-----~~i~fv~~d 109 (238)
T COG2226 38 LWRRALISLL--GIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGV-----QNVEFVVGD 109 (238)
T ss_pred HHHHHHHHhh--CCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCc-----cceEEEEec
Confidence 3456666666 566899999999999999999999987 79999999999999999999998877 459999999
Q ss_pred CCCCCCCCCcccceeccCcccccccc
Q psy7834 121 GRKGYLDEAPYDIIHVGGSIEDIPEG 146 (492)
Q Consensus 121 ~~~~~~~~~~~D~i~~~~~~~~l~~~ 146 (492)
++++|+++++||+|.++..++.+.+.
T Consensus 110 Ae~LPf~D~sFD~vt~~fglrnv~d~ 135 (238)
T COG2226 110 AENLPFPDNSFDAVTISFGLRNVTDI 135 (238)
T ss_pred hhhCCCCCCccCEEEeeehhhcCCCH
Confidence 99999999999999999888866554
No 27
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.63 E-value=8.1e-16 Score=147.70 Aligned_cols=97 Identities=24% Similarity=0.442 Sum_probs=83.2
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccE
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDV 288 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 288 (492)
+.++.+|||||||+|.++..+++.. +.++|+|+|+|+.|++.|+++. .++.++.+|+.... ..++||+
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~----------~~~~~~~~d~~~~~-~~~~fD~ 96 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL----------PDCQFVEADIASWQ-PPQALDL 96 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC----------CCCeEEECchhccC-CCCCccE
Confidence 4678899999999999999999886 6779999999999999998764 25789999986543 4568999
Q ss_pred EEecCcchhhHH------HHHHHhccCCeEEEEeC
Q psy7834 289 IYVGGAVHHYPF------KLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 289 i~s~~~~~~~~~------~~~~~L~pgG~l~~~~~ 317 (492)
|+++.++||+++ ++.++|||||++++.++
T Consensus 97 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 97 IFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred EEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 999999998864 78899999999999764
No 28
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.63 E-value=1e-15 Score=149.37 Aligned_cols=129 Identities=31% Similarity=0.509 Sum_probs=105.8
Q ss_pred CcccCCCCCCC-----CCccccccccc-cCC---cccCCccccccchhhhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHH
Q psy7834 1 MLAVDRGHYTT-----WRPYANCITNI-GYG---AHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFT 71 (492)
Q Consensus 1 ~~~~~~~~~~~-----~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~ 71 (492)
|++|||+.|+| ..+|.|.++|. ..+ +.++.|.. ...+++.+ .++++++|||+|||+|+++
T Consensus 27 ~~~vpRe~Fvp~~~~~~~aY~D~~l~~~~~g~~~~~~~~p~l---------~a~ll~~L--~i~~g~~VLDIG~GtG~~a 95 (322)
T PRK13943 27 FLEVPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSL---------MALFMEWV--GLDKGMRVLEIGGGTGYNA 95 (322)
T ss_pred HHcCCHHHcCCcchhhhhccCCCcccccCCCcccccCCcHHH---------HHHHHHhc--CCCCCCEEEEEeCCccHHH
Confidence 67999999999 24588888875 333 35666655 67788877 7888999999999999999
Q ss_pred HHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccceeccCccccccc
Q psy7834 72 ALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 145 (492)
Q Consensus 72 ~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~~l~~ 145 (492)
..+++..+..++|+++|++++|++.|+++++++++ .+++++++|+...+....+||+|+++...+++++
T Consensus 96 ~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-----~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~~ip~ 164 (322)
T PRK13943 96 AVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-----ENVIFVCGDGYYGVPEFAPYDVIFVTVGVDEVPE 164 (322)
T ss_pred HHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEeCChhhcccccCCccEEEECCchHHhHH
Confidence 99999875456899999999999999999988887 6899999998877655678999999866654443
No 29
>PLN02244 tocopherol O-methyltransferase
Probab=99.63 E-value=3.2e-15 Score=148.65 Aligned_cols=102 Identities=21% Similarity=0.270 Sum_probs=88.5
Q ss_pred CCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEE
Q psy7834 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVI 289 (492)
Q Consensus 210 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i 289 (492)
.++.+|||||||+|.++..+++.. .++|+|+|+|+.|++.|+++.+..+ ...+++|+++|+.+.++++++||+|
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g----~~~~v~~~~~D~~~~~~~~~~FD~V 190 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQG----LSDKVSFQVADALNQPFEDGQFDLV 190 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEEcCcccCCCCCCCccEE
Confidence 567899999999999999999876 4589999999999999999887653 2357999999998877778899999
Q ss_pred EecCcchhhHH------HHHHHhccCCeEEEEeC
Q psy7834 290 YVGGAVHHYPF------KLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 290 ~s~~~~~~~~~------~~~~~L~pgG~l~~~~~ 317 (492)
++..+++|+++ ++.++|||||++++...
T Consensus 191 ~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 191 WSMESGEHMPDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred EECCchhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99999988764 88999999999999653
No 30
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.62 E-value=4.2e-15 Score=140.30 Aligned_cols=110 Identities=20% Similarity=0.401 Sum_probs=92.2
Q ss_pred HHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCC
Q psy7834 200 QALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREG 279 (492)
Q Consensus 200 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 279 (492)
.+++.+. ++++.+|||+|||+|.++..+++..++.++|+|+|+|+.|++.|++++...+ .++++++++|+...
T Consensus 36 ~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~ 108 (231)
T TIGR02752 36 DTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG-----LHNVELVHGNAMEL 108 (231)
T ss_pred HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC-----CCceEEEEechhcC
Confidence 3444443 5678999999999999999999987777899999999999999999987642 35799999999776
Q ss_pred CcCCCCccEEEecCcchhhH------HHHHHHhccCCeEEEEe
Q psy7834 280 HAAEGPYDVIYVGGAVHHYP------FKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 280 ~~~~~~fD~i~s~~~~~~~~------~~~~~~L~pgG~l~~~~ 316 (492)
+.++++||+|+++..+++++ .++.++|+|||++++..
T Consensus 109 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 109 PFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred CCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence 66678999999998887765 37899999999998854
No 31
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.62 E-value=5.2e-15 Score=133.54 Aligned_cols=104 Identities=28% Similarity=0.346 Sum_probs=87.4
Q ss_pred ccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCcc
Q psy7834 208 YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYD 287 (492)
Q Consensus 208 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 287 (492)
.++++.+|||+|||+|..+..+++.. +.++|+++|+|+.|++.|+++++.++ ..+++++++|+.+... .++||
T Consensus 42 ~l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~-----l~~i~~~~~d~~~~~~-~~~fD 114 (187)
T PRK00107 42 YLPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELG-----LKNVTVVHGRAEEFGQ-EEKFD 114 (187)
T ss_pred hcCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcC-----CCCEEEEeccHhhCCC-CCCcc
Confidence 35668999999999999999999875 67899999999999999999998864 3469999999977554 67899
Q ss_pred EEEecCc--chhhHHHHHHHhccCCeEEEEeCC
Q psy7834 288 VIYVGGA--VHHYPFKLMDQLKPGGVMWFTIGN 318 (492)
Q Consensus 288 ~i~s~~~--~~~~~~~~~~~L~pgG~l~~~~~~ 318 (492)
+|+++.. +..+..++++.|||||++++..+.
T Consensus 115 lV~~~~~~~~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 115 VVTSRAVASLSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred EEEEccccCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 9999764 234556899999999999997654
No 32
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.62 E-value=1.5e-15 Score=145.46 Aligned_cols=102 Identities=25% Similarity=0.386 Sum_probs=85.2
Q ss_pred HHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCC
Q psy7834 200 QALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREG 279 (492)
Q Consensus 200 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 279 (492)
.+++.+. ..++.+|||+|||+|.++..++++. +.++|+|+|+|+.|++.|+++ +++++++|+.+.
T Consensus 20 ~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~------------~~~~~~~d~~~~ 84 (255)
T PRK14103 20 DLLARVG--AERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER------------GVDARTGDVRDW 84 (255)
T ss_pred HHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc------------CCcEEEcChhhC
Confidence 3344443 4578899999999999999999986 677999999999999998753 468899998764
Q ss_pred CcCCCCccEEEecCcchhhHH------HHHHHhccCCeEEEEeC
Q psy7834 280 HAAEGPYDVIYVGGAVHHYPF------KLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 280 ~~~~~~fD~i~s~~~~~~~~~------~~~~~L~pgG~l~~~~~ 317 (492)
..+++||+|+++.++||+++ +++++|||||++++.++
T Consensus 85 -~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 85 -KPKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred -CCCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 35678999999999999874 78999999999999764
No 33
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.60 E-value=1.7e-14 Score=126.42 Aligned_cols=121 Identities=28% Similarity=0.511 Sum_probs=103.2
Q ss_pred CCcccChHHHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCc
Q psy7834 189 GSVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGR 268 (492)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~ 268 (492)
+..++.+.+.+..+..|. +.+|++++|||||||..+..++ +.+|.++|+++|.++++++..++|+++. +.+|
T Consensus 14 ~~p~TK~EIRal~ls~L~--~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~f-----g~~n 85 (187)
T COG2242 14 GGPMTKEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARF-----GVDN 85 (187)
T ss_pred CCCCcHHHHHHHHHHhhC--CCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHh-----CCCc
Confidence 344677788888888887 8999999999999999999999 5569999999999999999999999986 4679
Q ss_pred EEEEEccCCCCCcCCCCccEEEecCc--chhhHHHHHHHhccCCeEEEEeC
Q psy7834 269 VQFVDGDGREGHAAEGPYDVIYVGGA--VHHYPFKLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 269 v~~~~~d~~~~~~~~~~fD~i~s~~~--~~~~~~~~~~~L~pgG~l~~~~~ 317 (492)
++++.+|+.+......+||.||.+.. ++.+.+.+...|||||++++..-
T Consensus 86 ~~vv~g~Ap~~L~~~~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 86 LEVVEGDAPEALPDLPSPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred EEEEeccchHhhcCCCCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEee
Confidence 99999998765544447999998876 35666799999999999999653
No 34
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.60 E-value=8.8e-15 Score=139.20 Aligned_cols=113 Identities=17% Similarity=0.333 Sum_probs=90.1
Q ss_pred HHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccC
Q psy7834 198 HAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMV-GPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDG 276 (492)
Q Consensus 198 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~ 276 (492)
+..+...+...+.++.+|||+|||+|..+..+++.. .+.++|+|+|+|+.|++.|++++...+ ...+++++++|+
T Consensus 43 ~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~----~~~~v~~~~~d~ 118 (247)
T PRK15451 43 ISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK----APTPVDVIEGDI 118 (247)
T ss_pred HHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC----CCCCeEEEeCCh
Confidence 333333344446788999999999999999998853 367899999999999999999987653 234799999998
Q ss_pred CCCCcCCCCccEEEecCcchhhH--------HHHHHHhccCCeEEEEe
Q psy7834 277 REGHAAEGPYDVIYVGGAVHHYP--------FKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 277 ~~~~~~~~~fD~i~s~~~~~~~~--------~~~~~~L~pgG~l~~~~ 316 (492)
.+.+. +.+|+|+++.++|+++ .++++.|||||.+++..
T Consensus 119 ~~~~~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 119 RDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hhCCC--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 76543 3599999999888774 38899999999999964
No 35
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.60 E-value=6.5e-14 Score=151.65 Aligned_cols=105 Identities=15% Similarity=0.219 Sum_probs=80.6
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCc-CCCCcc
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHA-AEGPYD 287 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD 287 (492)
+.+|.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.|++|+..++. ...+++++++|+.+... ..++||
T Consensus 536 ~~~g~rVLDlf~gtG~~sl~aa~~G--a~~V~~vD~s~~al~~a~~N~~~ng~---~~~~v~~i~~D~~~~l~~~~~~fD 610 (702)
T PRK11783 536 MAKGKDFLNLFAYTGTASVHAALGG--AKSTTTVDMSNTYLEWAERNFALNGL---SGRQHRLIQADCLAWLKEAREQFD 610 (702)
T ss_pred hcCCCeEEEcCCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCC---CccceEEEEccHHHHHHHcCCCcC
Confidence 3458899999999999999999753 34799999999999999999988752 12479999999765321 246899
Q ss_pred EEEecCcc-----------------hhhHHHHHHHhccCCeEEEEeCC
Q psy7834 288 VIYVGGAV-----------------HHYPFKLMDQLKPGGVMWFTIGN 318 (492)
Q Consensus 288 ~i~s~~~~-----------------~~~~~~~~~~L~pgG~l~~~~~~ 318 (492)
+|+++... ..+...+.+.|+|||.+++.+..
T Consensus 611 lIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 611 LIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred EEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 99987532 11223667899999999887543
No 36
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.60 E-value=8.1e-15 Score=132.10 Aligned_cols=101 Identities=27% Similarity=0.300 Sum_probs=84.4
Q ss_pred CCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEE
Q psy7834 211 PGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIY 290 (492)
Q Consensus 211 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~ 290 (492)
++.+|||+|||+|.++..++... +.++|+|+|+|+.|++.+++++++.+ ..+++++++|+.+. ...++||+|+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~-----~~~i~~i~~d~~~~-~~~~~fD~I~ 114 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELG-----LNNVEIVNGRAEDF-QHEEQFDVIT 114 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhC-----CCCeEEEecchhhc-cccCCccEEE
Confidence 47899999999999999998765 67899999999999999999988753 35799999999764 3457899999
Q ss_pred ecCcchhhH---HHHHHHhccCCeEEEEeCCC
Q psy7834 291 VGGAVHHYP---FKLMDQLKPGGVMWFTIGNA 319 (492)
Q Consensus 291 s~~~~~~~~---~~~~~~L~pgG~l~~~~~~~ 319 (492)
++. +++++ +.+.++|+|||++++..++.
T Consensus 115 s~~-~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 145 (181)
T TIGR00138 115 SRA-LASLNVLLELTLNLLKVGGYFLAYKGKK 145 (181)
T ss_pred ehh-hhCHHHHHHHHHHhcCCCCEEEEEcCCC
Confidence 987 55555 47889999999999976543
No 37
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.59 E-value=1.3e-15 Score=138.14 Aligned_cols=100 Identities=24% Similarity=0.405 Sum_probs=86.1
Q ss_pred CCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEE
Q psy7834 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVI 289 (492)
Q Consensus 210 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i 289 (492)
-+|.+|||+|||-|.++..+|+.+ ++|+|+|+|+.+++.|+..+...+ -++++.+.+.+++....++||+|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~g------v~i~y~~~~~edl~~~~~~FDvV 128 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESG------VNIDYRQATVEDLASAGGQFDVV 128 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhcc------ccccchhhhHHHHHhcCCCccEE
Confidence 378999999999999999999985 479999999999999999988754 24668887776655555899999
Q ss_pred EecCcchhhHH------HHHHHhccCCeEEEEeCC
Q psy7834 290 YVGGAVHHYPF------KLMDQLKPGGVMWFTIGN 318 (492)
Q Consensus 290 ~s~~~~~~~~~------~~~~~L~pgG~l~~~~~~ 318 (492)
+|..+++|+++ ++.+.+||||.+++++..
T Consensus 129 ~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 129 TCMEVLEHVPDPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred EEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccc
Confidence 99999999986 689999999999998754
No 38
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.59 E-value=3.4e-14 Score=120.17 Aligned_cols=114 Identities=29% Similarity=0.502 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEc
Q psy7834 195 PKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDG 274 (492)
Q Consensus 195 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~ 274 (492)
..+...+++.+. +.++.+|||+|||+|.++..++++. +.++|+++|+|+.+++.+++++...+ ..+++++.+
T Consensus 5 ~~~~~~~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~~ 76 (124)
T TIGR02469 5 REVRALTLSKLR--LRPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFG-----VSNIVIVEG 76 (124)
T ss_pred HHHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhC-----CCceEEEec
Confidence 344455555553 5667899999999999999999986 55899999999999999999988753 347899999
Q ss_pred cCCCCC-cCCCCccEEEecCcchh---hHHHHHHHhccCCeEEEEe
Q psy7834 275 DGREGH-AAEGPYDVIYVGGAVHH---YPFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 275 d~~~~~-~~~~~fD~i~s~~~~~~---~~~~~~~~L~pgG~l~~~~ 316 (492)
|+.... ...++||.|++....++ +.+++.+.|+|||++++.+
T Consensus 77 ~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 77 DAPEALEDSLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred cccccChhhcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence 875422 23468999999876544 4568999999999999865
No 39
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.58 E-value=2.3e-15 Score=140.93 Aligned_cols=97 Identities=27% Similarity=0.472 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCC
Q psy7834 43 QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR 122 (492)
Q Consensus 43 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 122 (492)
++++++.+ ...+|.+|||+|||||..+..+++..+++++|+|+|+|++|++.|+++....+. .+++++++|++
T Consensus 36 r~~~~~~~--~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~-----~~i~~v~~da~ 108 (233)
T PF01209_consen 36 RRKLIKLL--GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL-----QNIEFVQGDAE 108 (233)
T ss_dssp -SHHHHHH--T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-------SEEEEE-BTT
T ss_pred HHHHHhcc--CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC-----CCeeEEEcCHH
Confidence 45667766 678899999999999999999999887778999999999999999999988776 69999999999
Q ss_pred CCCCCCCcccceeccCcccccccc
Q psy7834 123 KGYLDEAPYDIIHVGGSIEDIPEG 146 (492)
Q Consensus 123 ~~~~~~~~~D~i~~~~~~~~l~~~ 146 (492)
++|+++++||+|+++..++++++.
T Consensus 109 ~lp~~d~sfD~v~~~fglrn~~d~ 132 (233)
T PF01209_consen 109 DLPFPDNSFDAVTCSFGLRNFPDR 132 (233)
T ss_dssp B--S-TT-EEEEEEES-GGG-SSH
T ss_pred HhcCCCCceeEEEHHhhHHhhCCH
Confidence 999999999999999988876654
No 40
>KOG1661|consensus
Probab=99.58 E-value=4.8e-15 Score=130.28 Aligned_cols=138 Identities=43% Similarity=0.757 Sum_probs=119.1
Q ss_pred CcccCCCCCCC----CCccccccccccCCcccCCccccccchhhhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHH
Q psy7834 1 MLAVDRGHYTT----WRPYANCITNIGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAW 76 (492)
Q Consensus 1 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~ 76 (492)
|+++||.+|.| ..+|.+.+...+++.++++|.+ .+.+++.|...+.+|...||+|+|||+++..++.
T Consensus 32 ~~a~dR~dy~p~~~~~n~y~d~pq~~G~n~~iSAp~m---------ha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~ 102 (237)
T KOG1661|consen 32 MRATDRSDYAPRSERTNPYMDSPQKIGYNLTISAPHM---------HATALEYLDDHLQPGASFLDVGSGSGYLTACFAR 102 (237)
T ss_pred HHhhchhhccccccccCCCCCCccccCCceEEcchHH---------HHHHHHHHHHhhccCcceeecCCCccHHHHHHHH
Confidence 68999999999 4889999888888899999999 9999999955599999999999999999999999
Q ss_pred HhCCCcEE-EEEeCCHHHHHHHHHhhhcCC-----CCccccCceEEEecCCCCCCCCCCcccceeccCcccccccch
Q psy7834 77 CVGKTGKV-IGIEHIPQLVQRATHNVISGN-----PEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEGV 147 (492)
Q Consensus 77 ~~~~~~~v-~~vd~~~~~~~~a~~~~~~~~-----~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~~l~~~L 147 (492)
.++.++.+ +|||.-++.++.+++++.+.- .+.+.-+++.++.||+.....+.++||.|.+..+.+++++.|
T Consensus 103 mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~YDaIhvGAaa~~~pq~l 179 (237)
T KOG1661|consen 103 MVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPYDAIHVGAAASELPQEL 179 (237)
T ss_pred HhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCcceEEEccCccccHHHH
Confidence 88665654 999999999999999987642 222344689999999999988899999999998877666654
No 41
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.57 E-value=7.6e-15 Score=143.38 Aligned_cols=101 Identities=20% Similarity=0.265 Sum_probs=85.4
Q ss_pred CCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEE
Q psy7834 211 PGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIY 290 (492)
Q Consensus 211 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~ 290 (492)
++.+|||||||+|.++..+++. .++|+|+|+|++|++.|+++....+ ...+++++++|+.+.+..+++||+|+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~----~~~~i~~~~~dae~l~~~~~~FD~Vi 203 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDP----VTSTIEYLCTTAEKLADEGRKFDAVL 203 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcC----cccceeEEecCHHHhhhccCCCCEEE
Confidence 5679999999999999999874 3579999999999999998865432 12479999999877666677999999
Q ss_pred ecCcchhhHH------HHHHHhccCCeEEEEeCC
Q psy7834 291 VGGAVHHYPF------KLMDQLKPGGVMWFTIGN 318 (492)
Q Consensus 291 s~~~~~~~~~------~~~~~L~pgG~l~~~~~~ 318 (492)
+..+++|+++ ++.++|||||.+++++..
T Consensus 204 ~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 204 SLEVIEHVANPAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred EhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999998864 889999999999998654
No 42
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.57 E-value=1.5e-14 Score=140.04 Aligned_cols=103 Identities=34% Similarity=0.465 Sum_probs=89.6
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccE
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDV 288 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 288 (492)
++++.+|||+|||+|..+..+++..++.++|+++|+|+.|++.|+++....+ ..+++++.+|+.+.+.++++||+
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g-----~~~v~~~~~d~~~l~~~~~~fD~ 149 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG-----YTNVEFRLGEIEALPVADNSVDV 149 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC-----CCCEEEEEcchhhCCCCCCceeE
Confidence 6789999999999999998888887777899999999999999999987753 35799999999876666779999
Q ss_pred EEecCcchhhH------HHHHHHhccCCeEEEEe
Q psy7834 289 IYVGGAVHHYP------FKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 289 i~s~~~~~~~~------~~~~~~L~pgG~l~~~~ 316 (492)
|+++.++++.+ ++++++|||||++++..
T Consensus 150 Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 150 IISNCVINLSPDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred EEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 99998887665 38899999999999964
No 43
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.54 E-value=7.3e-14 Score=132.47 Aligned_cols=102 Identities=19% Similarity=0.348 Sum_probs=85.6
Q ss_pred cCCCCceEEEeccccHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCcc
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMV-GPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYD 287 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 287 (492)
+.++.+|||+|||+|.++..++++. .+.++|+|+|+|+.|++.|++++...+ ...+++++++|+...+. ..+|
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~----~~~~v~~~~~d~~~~~~--~~~d 124 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH----SEIPVEILCNDIRHVEI--KNAS 124 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC----CCCCeEEEECChhhCCC--CCCC
Confidence 4678899999999999999999875 357899999999999999999987642 23478999999976543 3599
Q ss_pred EEEecCcchhhH--------HHHHHHhccCCeEEEEe
Q psy7834 288 VIYVGGAVHHYP--------FKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 288 ~i~s~~~~~~~~--------~~~~~~L~pgG~l~~~~ 316 (492)
+|+++.++|+++ .++.++|||||.+++..
T Consensus 125 ~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 125 MVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred EEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 999999998874 27889999999999974
No 44
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.54 E-value=4.2e-14 Score=135.57 Aligned_cols=107 Identities=28% Similarity=0.369 Sum_probs=87.7
Q ss_pred HHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCC
Q psy7834 199 AQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGRE 278 (492)
Q Consensus 199 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 278 (492)
..+++.+. +.++.+|||||||+|..+..+++.. .++|+|+|+|+.|++.|+++... ..++.++.+|+..
T Consensus 42 ~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~-------~~~i~~~~~D~~~ 110 (263)
T PTZ00098 42 TKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD-------KNKIEFEANDILK 110 (263)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc-------CCceEEEECCccc
Confidence 44455543 6788999999999999999998764 45899999999999999987643 2479999999877
Q ss_pred CCcCCCCccEEEecCcchhhH--------HHHHHHhccCCeEEEEe
Q psy7834 279 GHAAEGPYDVIYVGGAVHHYP--------FKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 279 ~~~~~~~fD~i~s~~~~~~~~--------~~~~~~L~pgG~l~~~~ 316 (492)
.+.++++||+|++..+++|++ .++.++|||||++++..
T Consensus 111 ~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 111 KDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred CCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 666778999999987776654 27889999999999964
No 45
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.54 E-value=2.9e-14 Score=136.46 Aligned_cols=102 Identities=21% Similarity=0.317 Sum_probs=85.0
Q ss_pred CCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCC-cCCCCccE
Q psy7834 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGH-AAEGPYDV 288 (492)
Q Consensus 210 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~ 288 (492)
.++.+|||+|||+|.++..+++.. .+|+++|+|++|++.|+++....+ ...+++++++|+.+.. ..+++||+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g----~~~~v~~~~~d~~~l~~~~~~~fD~ 115 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKG----VSDNMQFIHCAAQDIAQHLETPVDL 115 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcC----CccceEEEEcCHHHHhhhcCCCCCE
Confidence 456799999999999999999863 479999999999999999987753 2357899999986643 34578999
Q ss_pred EEecCcchhhH------HHHHHHhccCCeEEEEeCC
Q psy7834 289 IYVGGAVHHYP------FKLMDQLKPGGVMWFTIGN 318 (492)
Q Consensus 289 i~s~~~~~~~~------~~~~~~L~pgG~l~~~~~~ 318 (492)
|++..+++++. .++.++|||||++++.+.+
T Consensus 116 V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 116 ILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred EEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEEC
Confidence 99999998875 3889999999999986543
No 46
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.54 E-value=1.3e-13 Score=125.74 Aligned_cols=115 Identities=25% Similarity=0.417 Sum_probs=91.1
Q ss_pred ccChHHHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEE
Q psy7834 192 MSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQF 271 (492)
Q Consensus 192 ~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~ 271 (492)
++.+.+.+.+++.+. +.++.+|||+|||+|.++..++++. +.++|+++|+|+.|++.|++++..++ ..++++
T Consensus 14 ~~~~~~r~~~~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~-----~~~i~~ 85 (187)
T PRK08287 14 MTKEEVRALALSKLE--LHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFG-----CGNIDI 85 (187)
T ss_pred CchHHHHHHHHHhcC--CCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhC-----CCCeEE
Confidence 344555555666664 5678899999999999999999885 67899999999999999999988753 346899
Q ss_pred EEccCCCCCcCCCCccEEEecCcchh---hHHHHHHHhccCCeEEEEe
Q psy7834 272 VDGDGREGHAAEGPYDVIYVGGAVHH---YPFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 272 ~~~d~~~~~~~~~~fD~i~s~~~~~~---~~~~~~~~L~pgG~l~~~~ 316 (492)
+.+|.... ..++||+|+++..... +.+.+.+.|+|||++++..
T Consensus 86 ~~~d~~~~--~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 86 IPGEAPIE--LPGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred EecCchhh--cCcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEE
Confidence 99987432 2357999999876444 3457899999999999864
No 47
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.54 E-value=5.1e-14 Score=129.17 Aligned_cols=104 Identities=21% Similarity=0.183 Sum_probs=82.9
Q ss_pred HHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCC
Q psy7834 200 QALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREG 279 (492)
Q Consensus 200 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 279 (492)
.+++.+. ..++.+|||+|||+|..+..|+++. .+|+|+|+|++|++.++++....+ ..++++...|+.+.
T Consensus 21 ~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~~~-----~~~v~~~~~d~~~~ 90 (197)
T PRK11207 21 EVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAAEN-----LDNLHTAVVDLNNL 90 (197)
T ss_pred HHHHhcc--cCCCCcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHcC-----CCcceEEecChhhC
Confidence 3344443 4456899999999999999999863 379999999999999999887643 34688999998654
Q ss_pred CcCCCCccEEEecCcchhhH--------HHHHHHhccCCeEEE
Q psy7834 280 HAAEGPYDVIYVGGAVHHYP--------FKLMDQLKPGGVMWF 314 (492)
Q Consensus 280 ~~~~~~fD~i~s~~~~~~~~--------~~~~~~L~pgG~l~~ 314 (492)
.. .++||+|+++.++|+++ .++.++|||||.+++
T Consensus 91 ~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 91 TF-DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred Cc-CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 43 46799999999887764 278899999999655
No 48
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.54 E-value=5e-14 Score=132.60 Aligned_cols=99 Identities=33% Similarity=0.367 Sum_probs=86.5
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccE
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDV 288 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 288 (492)
++||++|||||||.|.+++.+|++. +.+|+|+++|+++.+.+++++...| ...+++++..|..+.. ++||.
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~g----l~~~v~v~l~d~rd~~---e~fDr 140 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARG----LEDNVEVRLQDYRDFE---EPFDR 140 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcC----CCcccEEEeccccccc---cccce
Confidence 8999999999999999999999997 4589999999999999999998875 2358999999987633 45999
Q ss_pred EEecCcchhhHH--------HHHHHhccCCeEEEEe
Q psy7834 289 IYVGGAVHHYPF--------KLMDQLKPGGVMWFTI 316 (492)
Q Consensus 289 i~s~~~~~~~~~--------~~~~~L~pgG~l~~~~ 316 (492)
|+|..+++|+.. .+.+.|+|||++++..
T Consensus 141 IvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 141 IVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred eeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 999999987753 7889999999999864
No 49
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.53 E-value=1.5e-14 Score=117.95 Aligned_cols=90 Identities=29% Similarity=0.580 Sum_probs=71.9
Q ss_pred eEEEeccccHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEEec
Q psy7834 215 VLDIGSGSGYLTACMAHMV--GPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVG 292 (492)
Q Consensus 215 vLDiGcG~G~~~~~la~~~--~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~s~ 292 (492)
|||+|||+|..+..+++.+ ++..+++|+|+|++|++.++++....+ .+++++++|+.++...+++||+|++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~------~~~~~~~~D~~~l~~~~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG------PKVRFVQADARDLPFSDGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT------TTSEEEESCTTCHHHHSSSEEEEEE-
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC------CceEEEECCHhHCcccCCCeeEEEEc
Confidence 7999999999999999886 344799999999999999999987632 37899999998876677899999994
Q ss_pred -CcchhhHH--------HHHHHhccCC
Q psy7834 293 -GAVHHYPF--------KLMDQLKPGG 310 (492)
Q Consensus 293 -~~~~~~~~--------~~~~~L~pgG 310 (492)
.+++++.+ ++.++|||||
T Consensus 75 ~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 75 GLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 54777763 7889999997
No 50
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.52 E-value=1.6e-13 Score=132.89 Aligned_cols=135 Identities=20% Similarity=0.260 Sum_probs=100.5
Q ss_pred CCCCCCcccCCCCcccChHHHHHHHHHHHhcc--CCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q psy7834 178 PYWDIPQSLGFGSVMSSPKVHAQALEILKDYL--KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKS 255 (492)
Q Consensus 178 ~y~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~ 255 (492)
.|....+.++.+..+++|.+...+...+...+ .++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|++|
T Consensus 86 ~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n 164 (284)
T TIGR03533 86 WFAGLEFYVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEIN 164 (284)
T ss_pred eecCcEEEECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHH
Confidence 44555666666777777766555544443323 345799999999999999999886 677999999999999999999
Q ss_pred HHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEEecCcc-------------------------------hhhHHHHHH
Q psy7834 256 MHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAV-------------------------------HHYPFKLMD 304 (492)
Q Consensus 256 ~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~s~~~~-------------------------------~~~~~~~~~ 304 (492)
++.++ ...+++++++|+.+.. +.++||+|++|... ..+..++.+
T Consensus 165 ~~~~~----~~~~i~~~~~D~~~~~-~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~ 239 (284)
T TIGR03533 165 IERHG----LEDRVTLIQSDLFAAL-PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAAD 239 (284)
T ss_pred HHHcC----CCCcEEEEECchhhcc-CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 98764 1247999999986533 34579999998421 011235678
Q ss_pred HhccCCeEEEEeCC
Q psy7834 305 QLKPGGVMWFTIGN 318 (492)
Q Consensus 305 ~L~pgG~l~~~~~~ 318 (492)
.|+|||++++.++.
T Consensus 240 ~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 240 HLNENGVLVVEVGN 253 (284)
T ss_pred hcCCCCEEEEEECc
Confidence 99999999998764
No 51
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.52 E-value=1.3e-13 Score=126.63 Aligned_cols=120 Identities=28% Similarity=0.446 Sum_probs=93.3
Q ss_pred ccChHHHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEE
Q psy7834 192 MSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQF 271 (492)
Q Consensus 192 ~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~ 271 (492)
++.+.+....+..+. +.++.+|||+|||+|.++..+++..++.++|+++|+|+.|++.|+++++.++ ...++.+
T Consensus 23 ~t~~~~r~~~l~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g----~~~~v~~ 96 (198)
T PRK00377 23 MTKEEIRALALSKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG----VLNNIVL 96 (198)
T ss_pred CCHHHHHHHHHHHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC----CCCCeEE
Confidence 444555445555543 7789999999999999999999887677899999999999999999998753 1357899
Q ss_pred EEccCCCCCc-CCCCccEEEecCcc---hhhHHHHHHHhccCCeEEEEeC
Q psy7834 272 VDGDGREGHA-AEGPYDVIYVGGAV---HHYPFKLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 272 ~~~d~~~~~~-~~~~fD~i~s~~~~---~~~~~~~~~~L~pgG~l~~~~~ 317 (492)
+.+|..+... ..++||+|+++... ..+.+++.+.|||||++++...
T Consensus 97 ~~~d~~~~l~~~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 97 IKGEAPEILFTINEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred EEechhhhHhhcCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEee
Confidence 9999865332 23689999996543 4455688999999999998543
No 52
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.52 E-value=4.3e-14 Score=135.15 Aligned_cols=95 Identities=25% Similarity=0.341 Sum_probs=80.1
Q ss_pred CCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEE
Q psy7834 211 PGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIY 290 (492)
Q Consensus 211 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~ 290 (492)
++.+|||+|||+|.++..+++. ..+|+++|+|+.|++.|+++.. ...++++|+...+..+++||+|+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~----------~~~~~~~d~~~~~~~~~~fD~V~ 108 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA----------ADHYLAGDIESLPLATATFDLAW 108 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC----------CCCEEEcCcccCcCCCCcEEEEE
Confidence 4679999999999999998875 3579999999999999988743 24688999987766778999999
Q ss_pred ecCcchhhH------HHHHHHhccCCeEEEEeCC
Q psy7834 291 VGGAVHHYP------FKLMDQLKPGGVMWFTIGN 318 (492)
Q Consensus 291 s~~~~~~~~------~~~~~~L~pgG~l~~~~~~ 318 (492)
++.+++|++ .++.++|+|||.++++...
T Consensus 109 s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 109 SNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred ECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 999998875 3889999999999997643
No 53
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.52 E-value=4.1e-14 Score=135.40 Aligned_cols=99 Identities=30% Similarity=0.338 Sum_probs=78.0
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccE
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDV 288 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 288 (492)
+++|.+|||||||.|.++..+|++. +.+|+|+.+|++..+.+++++++.+ ...++++...|..+.. .+||.
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~g----l~~~v~v~~~D~~~~~---~~fD~ 130 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAG----LEDRVEVRLQDYRDLP---GKFDR 130 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCST----SSSTEEEEES-GGG------S-SE
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEEeeccccC---CCCCE
Confidence 7899999999999999999999997 3589999999999999999998865 2457999999987633 38999
Q ss_pred EEecCcchhhH--------HHHHHHhccCCeEEEEe
Q psy7834 289 IYVGGAVHHYP--------FKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 289 i~s~~~~~~~~--------~~~~~~L~pgG~l~~~~ 316 (492)
|+|..++.|+. .++.++|||||++++..
T Consensus 131 IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 131 IVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp EEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred EEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 99999998873 37889999999999864
No 54
>KOG1540|consensus
Probab=99.52 E-value=9e-14 Score=125.94 Aligned_cols=105 Identities=22% Similarity=0.329 Sum_probs=88.1
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCC-----CeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCC
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPT-----GKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAE 283 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~-----~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 283 (492)
...+.++||++||||.++..+.+.+... ++|+.+|+|++|++.++++..+.+ +....++.++.+|++++++++
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~--l~~~~~~~w~~~dAE~LpFdd 175 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRP--LKASSRVEWVEGDAEDLPFDD 175 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcC--CCcCCceEEEeCCcccCCCCC
Confidence 4457899999999999999999998443 899999999999999999986632 112345999999999999999
Q ss_pred CCccEEEecCcchhhH------HHHHHHhccCCeEEEE
Q psy7834 284 GPYDVIYVGGAVHHYP------FKLMDQLKPGGVMWFT 315 (492)
Q Consensus 284 ~~fD~i~s~~~~~~~~------~~~~~~L~pgG~l~~~ 315 (492)
.+||...+...+..++ .+++|+|||||++.+-
T Consensus 176 ~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cL 213 (296)
T KOG1540|consen 176 DSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCL 213 (296)
T ss_pred CcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 9999999888775444 3899999999998863
No 55
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.52 E-value=1.3e-13 Score=135.73 Aligned_cols=100 Identities=23% Similarity=0.285 Sum_probs=80.8
Q ss_pred CCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEE
Q psy7834 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVI 289 (492)
Q Consensus 210 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i 289 (492)
.+|.+|||||||+|+++..+++.. + .+|+|+|+|+.|+.+++......+ ...+++++.+|+.+.+. .++||+|
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g-~-~~V~GiD~S~~~l~q~~a~~~~~~----~~~~i~~~~~d~e~lp~-~~~FD~V 193 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAG-A-KLVVGIDPSQLFLCQFEAVRKLLG----NDQRAHLLPLGIEQLPA-LKAFDTV 193 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcC-C-CEEEEEcCCHHHHHHHHHHHHhcC----CCCCeEEEeCCHHHCCC-cCCcCEE
Confidence 357899999999999999999874 3 369999999999987655433211 12479999999887665 6789999
Q ss_pred EecCcchhhHH------HHHHHhccCCeEEEEe
Q psy7834 290 YVGGAVHHYPF------KLMDQLKPGGVMWFTI 316 (492)
Q Consensus 290 ~s~~~~~~~~~------~~~~~L~pgG~l~~~~ 316 (492)
+|..+++|+.+ ++++.|+|||.++++.
T Consensus 194 ~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 194 FSMGVLYHRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred EECChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 99999988753 8899999999999864
No 56
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.51 E-value=2.2e-13 Score=121.96 Aligned_cols=110 Identities=29% Similarity=0.421 Sum_probs=86.1
Q ss_pred HHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCC
Q psy7834 199 AQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGRE 278 (492)
Q Consensus 199 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 278 (492)
..+++.+... ++.+|||+|||+|.++..++++. +..+|+++|+|+.+++.|++|+..++ ..+++++..|..+
T Consensus 21 ~lL~~~l~~~--~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~-----~~~v~~~~~d~~~ 92 (170)
T PF05175_consen 21 RLLLDNLPKH--KGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNG-----LENVEVVQSDLFE 92 (170)
T ss_dssp HHHHHHHHHH--TTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTT-----CTTEEEEESSTTT
T ss_pred HHHHHHHhhc--cCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcC-----ccccccccccccc
Confidence 3555656532 67899999999999999999886 77789999999999999999999864 3349999999876
Q ss_pred CCcCCCCccEEEecCcch-----------hhHHHHHHHhccCCeEEEEeC
Q psy7834 279 GHAAEGPYDVIYVGGAVH-----------HYPFKLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 279 ~~~~~~~fD~i~s~~~~~-----------~~~~~~~~~L~pgG~l~~~~~ 317 (492)
.. ..++||+|+||..++ .+..+..+.|||||.+++...
T Consensus 93 ~~-~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 93 AL-PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TC-CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc-cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 43 367999999997653 222477899999999987553
No 57
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=1.4e-13 Score=130.68 Aligned_cols=122 Identities=29% Similarity=0.315 Sum_probs=91.0
Q ss_pred cccCCCCcccChHHHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCC
Q psy7834 184 QSLGFGSVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNL 263 (492)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~ 263 (492)
..+|.|.+ .....+++.+.....+|.+|||+|||||.++...++.+ ..+|+|+|++|.+++.|+.|++.|+.+
T Consensus 139 lAFGTG~H----pTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLG--A~~v~g~DiDp~AV~aa~eNa~~N~v~- 211 (300)
T COG2264 139 LAFGTGTH----PTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLG--AKKVVGVDIDPQAVEAARENARLNGVE- 211 (300)
T ss_pred cccCCCCC----hhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcC--CceEEEecCCHHHHHHHHHHHHHcCCc-
Confidence 33455555 34567788888778899999999999999999999885 457999999999999999999987522
Q ss_pred CCCCcEEEEEccCCCCCcCCCCccEEEecCc---chhhHHHHHHHhccCCeEEEEe
Q psy7834 264 MEGGRVQFVDGDGREGHAAEGPYDVIYVGGA---VHHYPFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 264 ~~~~~v~~~~~d~~~~~~~~~~fD~i~s~~~---~~~~~~~~~~~L~pgG~l~~~~ 316 (492)
..+.....+... ....++||+|++|-. +-.+.+.+.+.|||||+++++-
T Consensus 212 ---~~~~~~~~~~~~-~~~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 212 ---LLVQAKGFLLLE-VPENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred ---hhhhcccccchh-hcccCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEe
Confidence 112222222211 223469999999963 3355578999999999999974
No 58
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.50 E-value=1.5e-13 Score=125.79 Aligned_cols=105 Identities=18% Similarity=0.158 Sum_probs=80.8
Q ss_pred HHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCC
Q psy7834 199 AQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGRE 278 (492)
Q Consensus 199 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 278 (492)
..+++.+. ..++.+|||+|||+|.++..++++. .+|+|+|+|+.|++.+++++...+ . ++.+...|...
T Consensus 20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~-----~-~v~~~~~d~~~ 88 (195)
T TIGR00477 20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKAREN-----L-PLRTDAYDINA 88 (195)
T ss_pred HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhC-----C-CceeEeccchh
Confidence 34445554 3456799999999999999999863 479999999999999998887643 1 36777778754
Q ss_pred CCcCCCCccEEEecCcchhhH--------HHHHHHhccCCeEEEE
Q psy7834 279 GHAAEGPYDVIYVGGAVHHYP--------FKLMDQLKPGGVMWFT 315 (492)
Q Consensus 279 ~~~~~~~fD~i~s~~~~~~~~--------~~~~~~L~pgG~l~~~ 315 (492)
.. ..++||+|+++.++++++ .++.+.|||||++++.
T Consensus 89 ~~-~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 89 AA-LNEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred cc-ccCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 33 245799999998887663 2788999999996654
No 59
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.50 E-value=2.5e-13 Score=132.08 Aligned_cols=101 Identities=19% Similarity=0.185 Sum_probs=79.1
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccE
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDV 288 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 288 (492)
..+|.+|||||||+|+++..++... + .+|+|+|+|+.|+.+++...+... ...++.+...++.+.+. ..+||+
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g-~-~~v~GiDpS~~ml~q~~~~~~~~~----~~~~v~~~~~~ie~lp~-~~~FD~ 191 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHG-A-KSLVGIDPTVLFLCQFEAVRKLLD----NDKRAILEPLGIEQLHE-LYAFDT 191 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcC-C-CEEEEEcCCHHHHHHHHHHHHHhc----cCCCeEEEECCHHHCCC-CCCcCE
Confidence 3568899999999999999988764 3 379999999999987644322211 12468888888876543 358999
Q ss_pred EEecCcchhhHH------HHHHHhccCCeEEEEe
Q psy7834 289 IYVGGAVHHYPF------KLMDQLKPGGVMWFTI 316 (492)
Q Consensus 289 i~s~~~~~~~~~------~~~~~L~pgG~l~~~~ 316 (492)
|+|+.+++|+++ +++++|||||.|++.+
T Consensus 192 V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 192 VFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 999999988763 8899999999999964
No 60
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.48 E-value=4.4e-13 Score=130.89 Aligned_cols=136 Identities=19% Similarity=0.237 Sum_probs=100.1
Q ss_pred CCCCCCcccCCCCcccChHHHHHHHHHHHhccCC--CCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q psy7834 178 PYWDIPQSLGFGSVMSSPKVHAQALEILKDYLKP--GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKS 255 (492)
Q Consensus 178 ~y~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~ 255 (492)
.|....+.++.+..+++|.+...+...+...++. +.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.|++|
T Consensus 98 ~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n 176 (307)
T PRK11805 98 WFCGLEFYVDERVLVPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEIN 176 (307)
T ss_pred eEcCcEEEECCCCcCCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHH
Confidence 4455566666677777776655544444322332 3689999999999999999886 678999999999999999999
Q ss_pred HHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEEecCcc-------------------------------hhhHHHHHH
Q psy7834 256 MHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAV-------------------------------HHYPFKLMD 304 (492)
Q Consensus 256 ~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~s~~~~-------------------------------~~~~~~~~~ 304 (492)
++.++ ...+++++++|+.+.. +.++||+|+++... ..+..++.+
T Consensus 177 ~~~~~----l~~~i~~~~~D~~~~l-~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~ 251 (307)
T PRK11805 177 IERHG----LEDRVTLIESDLFAAL-PGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPD 251 (307)
T ss_pred HHHhC----CCCcEEEEECchhhhC-CCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHH
Confidence 98764 1246999999986533 34579999998421 011236678
Q ss_pred HhccCCeEEEEeCCC
Q psy7834 305 QLKPGGVMWFTIGNA 319 (492)
Q Consensus 305 ~L~pgG~l~~~~~~~ 319 (492)
.|+|||++++..+..
T Consensus 252 ~L~pgG~l~~E~g~~ 266 (307)
T PRK11805 252 YLTEDGVLVVEVGNS 266 (307)
T ss_pred hcCCCCEEEEEECcC
Confidence 999999999987754
No 61
>KOG1270|consensus
Probab=99.48 E-value=5.6e-14 Score=128.25 Aligned_cols=98 Identities=30% Similarity=0.477 Sum_probs=77.7
Q ss_pred CCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCC----cEEEEEccCCCCCcCCCCcc
Q psy7834 212 GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGG----RVQFVDGDGREGHAAEGPYD 287 (492)
Q Consensus 212 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~----~v~~~~~d~~~~~~~~~~fD 287 (492)
|.+|||+|||+|.++..||+.+ ++|+|||+++.|++.|++..... +. ... ++++...|++.. .++||
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~d-P~--~~~~~~y~l~~~~~~~E~~---~~~fD 160 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMD-PV--LEGAIAYRLEYEDTDVEGL---TGKFD 160 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcC-ch--hccccceeeehhhcchhhc---ccccc
Confidence 5789999999999999999985 37999999999999999984332 11 222 366666776542 34599
Q ss_pred EEEecCcchhhHH------HHHHHhccCCeEEEEeCC
Q psy7834 288 VIYVGGAVHHYPF------KLMDQLKPGGVMWFTIGN 318 (492)
Q Consensus 288 ~i~s~~~~~~~~~------~~~~~L~pgG~l~~~~~~ 318 (492)
+|++..+++|+.+ .+.+.|||||+|+++.-.
T Consensus 161 aVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 161 AVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred eeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence 9999999999943 678999999999997643
No 62
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.48 E-value=2e-13 Score=125.65 Aligned_cols=103 Identities=24% Similarity=0.263 Sum_probs=83.9
Q ss_pred CCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccC-CCCC--cCCCCc
Q psy7834 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDG-REGH--AAEGPY 286 (492)
Q Consensus 210 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~-~~~~--~~~~~f 286 (492)
.++.+|||+|||+|.++..+++.. +..+|+|+|+|++|++.|++++...+ ..+++++++|+ .... ..+++|
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~-----~~~v~~~~~d~~~~l~~~~~~~~~ 112 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEG-----LTNLRLLCGDAVEVLLDMFPDGSL 112 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcC-----CCCEEEEecCHHHHHHHHcCcccc
Confidence 367899999999999999999886 66789999999999999999987743 35799999998 4433 346789
Q ss_pred cEEEecCcchh--------------hHHHHHHHhccCCeEEEEeCC
Q psy7834 287 DVIYVGGAVHH--------------YPFKLMDQLKPGGVMWFTIGN 318 (492)
Q Consensus 287 D~i~s~~~~~~--------------~~~~~~~~L~pgG~l~~~~~~ 318 (492)
|+|+++...++ +..++.++|||||++++.+..
T Consensus 113 D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~ 158 (202)
T PRK00121 113 DRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW 158 (202)
T ss_pred ceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence 99998764322 345889999999999997643
No 63
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.48 E-value=7.2e-13 Score=128.79 Aligned_cols=111 Identities=24% Similarity=0.226 Sum_probs=85.6
Q ss_pred HHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCC
Q psy7834 198 HAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGR 277 (492)
Q Consensus 198 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 277 (492)
...+++.+.....++.+|||+|||+|.++..+++.. ..+|+|+|+|+.|++.|++|+..++ ...++.+..++..
T Consensus 146 t~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g--~~~V~avDid~~al~~a~~n~~~n~----~~~~~~~~~~~~~ 219 (288)
T TIGR00406 146 TSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLG--AAKVVGIDIDPLAVESARKNAELNQ----VSDRLQVKLIYLE 219 (288)
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHcC----CCcceEEEecccc
Confidence 445566665556678999999999999999888753 3589999999999999999998764 1235666666632
Q ss_pred CCCcCCCCccEEEecCcchhh---HHHHHHHhccCCeEEEEe
Q psy7834 278 EGHAAEGPYDVIYVGGAVHHY---PFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 278 ~~~~~~~~fD~i~s~~~~~~~---~~~~~~~L~pgG~l~~~~ 316 (492)
. ...++||+|+++...+.+ ..++.+.|||||+++++.
T Consensus 220 ~--~~~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 220 Q--PIEGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSG 259 (288)
T ss_pred c--ccCCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 2 235689999998766544 358899999999999964
No 64
>PRK08317 hypothetical protein; Provisional
Probab=99.47 E-value=4.5e-13 Score=126.98 Aligned_cols=111 Identities=30% Similarity=0.536 Sum_probs=91.0
Q ss_pred HHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCC
Q psy7834 199 AQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGRE 278 (492)
Q Consensus 199 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 278 (492)
+.+++.+. +.++.+|||+|||+|.++..+++..++.++++|+|+|+.+++.|+++... ...++++..+|+..
T Consensus 9 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~------~~~~~~~~~~d~~~ 80 (241)
T PRK08317 9 ARTFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG------LGPNVEFVRGDADG 80 (241)
T ss_pred HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC------CCCceEEEeccccc
Confidence 34445443 67789999999999999999999876778999999999999999988332 23578999999876
Q ss_pred CCcCCCCccEEEecCcchhhH------HHHHHHhccCCeEEEEeC
Q psy7834 279 GHAAEGPYDVIYVGGAVHHYP------FKLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 279 ~~~~~~~fD~i~s~~~~~~~~------~~~~~~L~pgG~l~~~~~ 317 (492)
.+...++||+|++..++++++ +++.++|||||.+++...
T Consensus 81 ~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 81 LPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred CCCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 555667899999998887765 388999999999998653
No 65
>PRK05785 hypothetical protein; Provisional
Probab=99.47 E-value=3.1e-13 Score=126.53 Aligned_cols=95 Identities=18% Similarity=0.187 Sum_probs=77.6
Q ss_pred HHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCC
Q psy7834 200 QALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREG 279 (492)
Q Consensus 200 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 279 (492)
.+++.+.....++.+|||+|||||.++..+++.. .++|+|+|+|++|++.|+++ ..++++|+...
T Consensus 40 ~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~-------------~~~~~~d~~~l 104 (226)
T PRK05785 40 ELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA-------------DDKVVGSFEAL 104 (226)
T ss_pred HHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc-------------cceEEechhhC
Confidence 3444454334557899999999999999999875 35899999999999998763 13578898888
Q ss_pred CcCCCCccEEEecCcchhhHH------HHHHHhccC
Q psy7834 280 HAAEGPYDVIYVGGAVHHYPF------KLMDQLKPG 309 (492)
Q Consensus 280 ~~~~~~fD~i~s~~~~~~~~~------~~~~~L~pg 309 (492)
+.++++||+|+++.+++++++ ++.|+|||.
T Consensus 105 p~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 105 PFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred CCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence 888899999999999988764 899999994
No 66
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.47 E-value=4.7e-13 Score=129.32 Aligned_cols=109 Identities=22% Similarity=0.291 Sum_probs=85.0
Q ss_pred HHHHHHHHhccC-CCCceEEEeccccHHHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEcc
Q psy7834 199 AQALEILKDYLK-PGAKVLDIGSGSGYLTACMAHMVGPT--GKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGD 275 (492)
Q Consensus 199 ~~~~~~l~~~~~-~~~~vLDiGcG~G~~~~~la~~~~~~--~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d 275 (492)
..+.+.+...+. ++.+|||+|||+|.++..+++..... .+|+|+|+|+.|++.|+++. +++.+.++|
T Consensus 72 ~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----------~~~~~~~~d 141 (272)
T PRK11088 72 DAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----------PQVTFCVAS 141 (272)
T ss_pred HHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----------CCCeEEEee
Confidence 344444443333 45789999999999999998876322 37999999999999997653 357899999
Q ss_pred CCCCCcCCCCccEEEecCcchhhHHHHHHHhccCCeEEEEeCC
Q psy7834 276 GREGHAAEGPYDVIYVGGAVHHYPFKLMDQLKPGGVMWFTIGN 318 (492)
Q Consensus 276 ~~~~~~~~~~fD~i~s~~~~~~~~~~~~~~L~pgG~l~~~~~~ 318 (492)
+.+.+..+++||+|++... +....++.|+|||||++++..+.
T Consensus 142 ~~~lp~~~~sfD~I~~~~~-~~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 142 SHRLPFADQSLDAIIRIYA-PCKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred cccCCCcCCceeEEEEecC-CCCHHHHHhhccCCCEEEEEeCC
Confidence 9887777889999998765 34457999999999999987654
No 67
>PRK04266 fibrillarin; Provisional
Probab=99.46 E-value=7.6e-13 Score=123.22 Aligned_cols=114 Identities=27% Similarity=0.269 Sum_probs=86.2
Q ss_pred HHHHHHHHHH-HhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEc
Q psy7834 196 KVHAQALEIL-KDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDG 274 (492)
Q Consensus 196 ~~~~~~~~~l-~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~ 274 (492)
.....++..+ .-.+++|.+|||+|||+|.++..+++.++ .++|+|+|+|+.|++.+.++++.. .|+.++.+
T Consensus 56 ~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~-------~nv~~i~~ 127 (226)
T PRK04266 56 KLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER-------KNIIPILA 127 (226)
T ss_pred chHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc-------CCcEEEEC
Confidence 3344444433 11367899999999999999999999884 779999999999999888776542 47899999
Q ss_pred cCCCCC---cCCCCccEEEecCcchh----hHHHHHHHhccCCeEEEEeC
Q psy7834 275 DGREGH---AAEGPYDVIYVGGAVHH----YPFKLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 275 d~~~~~---~~~~~fD~i~s~~~~~~----~~~~~~~~L~pgG~l~~~~~ 317 (492)
|+.... ...++||+|++.....+ +..++.++|||||++++.+.
T Consensus 128 D~~~~~~~~~l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 128 DARKPERYAHVVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred CCCCcchhhhccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 986421 11356999998765433 23588999999999999653
No 68
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.46 E-value=8.8e-13 Score=131.13 Aligned_cols=136 Identities=21% Similarity=0.301 Sum_probs=101.7
Q ss_pred CCCCCCCcccCCCCcccChHHHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHH
Q psy7834 177 NPYWDIPQSLGFGSVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSM 256 (492)
Q Consensus 177 ~~y~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~ 256 (492)
..|....+.++.+..+++|..... ++.+...++++.+|||+|||+|.++..+++.. +..+|+|+|+|++|++.|++|+
T Consensus 218 ~~F~G~~f~V~p~vLIPRpeTE~L-Ve~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa 295 (423)
T PRK14966 218 REFYGRRFAVNPNVLIPRPETEHL-VEAVLARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNA 295 (423)
T ss_pred eeecCcEEEeCCCccCCCccHHHH-HHHhhhccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH
Confidence 456666777777777888765444 34333345667799999999999999999875 6779999999999999999999
Q ss_pred HhhCCCCCCCCcEEEEEccCCCCCc-CCCCccEEEecCcch-------------------------------hhHHHHHH
Q psy7834 257 HTYYPNLMEGGRVQFVDGDGREGHA-AEGPYDVIYVGGAVH-------------------------------HYPFKLMD 304 (492)
Q Consensus 257 ~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~i~s~~~~~-------------------------------~~~~~~~~ 304 (492)
+.++ .+++++++|+.+... ..++||+|+||.... .+.+.+.+
T Consensus 296 ~~~g------~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~ 369 (423)
T PRK14966 296 ADLG------ARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPD 369 (423)
T ss_pred HHcC------CcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHH
Confidence 8753 379999999865322 345799999986420 11124557
Q ss_pred HhccCCeEEEEeCCCc
Q psy7834 305 QLKPGGVMWFTIGNAE 320 (492)
Q Consensus 305 ~L~pgG~l~~~~~~~~ 320 (492)
.|+|||.+++..+..+
T Consensus 370 ~LkpgG~lilEiG~~Q 385 (423)
T PRK14966 370 RLAEGGFLLLEHGFDQ 385 (423)
T ss_pred hcCCCcEEEEEECccH
Confidence 8999999999887654
No 69
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.46 E-value=3.9e-13 Score=129.16 Aligned_cols=119 Identities=27% Similarity=0.413 Sum_probs=88.8
Q ss_pred cccCCCCcccChHHHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCC
Q psy7834 184 QSLGFGSVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNL 263 (492)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~ 263 (492)
..+|.|.+ .++..+++.|.....+|.+|||+|||||.+++..++.+ ..+|+|+|++|.+++.|++|+..|+.
T Consensus 138 ~AFGTG~H----~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klG--A~~v~a~DiDp~Av~~a~~N~~~N~~-- 209 (295)
T PF06325_consen 138 MAFGTGHH----PTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLG--AKKVVAIDIDPLAVEAARENAELNGV-- 209 (295)
T ss_dssp SSS-SSHC----HHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTT--BSEEEEEESSCHHHHHHHHHHHHTT---
T ss_pred CcccCCCC----HHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHHcCC--
Confidence 44555555 45678888888878899999999999999999998875 34899999999999999999998762
Q ss_pred CCCCcEEEEEccCCCCCcCCCCccEEEecCcch---hhHHHHHHHhccCCeEEEEe
Q psy7834 264 MEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVH---HYPFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 264 ~~~~~v~~~~~d~~~~~~~~~~fD~i~s~~~~~---~~~~~~~~~L~pgG~l~~~~ 316 (492)
..++.+. ...+ ...++||+|++|-..+ .+.+.+.+.|+|||+|+++-
T Consensus 210 --~~~~~v~--~~~~--~~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSG 259 (295)
T PF06325_consen 210 --EDRIEVS--LSED--LVEGKFDLVVANILADVLLELAPDIASLLKPGGYLILSG 259 (295)
T ss_dssp --TTCEEES--CTSC--TCCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEE
T ss_pred --CeeEEEE--Eecc--cccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEcc
Confidence 2345442 2112 2247899999996543 44458899999999999974
No 70
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.45 E-value=4.4e-13 Score=127.09 Aligned_cols=109 Identities=31% Similarity=0.466 Sum_probs=87.6
Q ss_pred HHHHHHHHhcc-CCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCC
Q psy7834 199 AQALEILKDYL-KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGR 277 (492)
Q Consensus 199 ~~~~~~l~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 277 (492)
..+++.+.... ..+.+|||+|||+|.++..+++.. +..+++++|+|+.+++.++++.. +++.++.+|+.
T Consensus 21 ~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~---------~~~~~~~~d~~ 90 (240)
T TIGR02072 21 KRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS---------ENVQFICGDAE 90 (240)
T ss_pred HHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC---------CCCeEEecchh
Confidence 33444444221 335799999999999999999886 67789999999999999987653 26789999998
Q ss_pred CCCcCCCCccEEEecCcchhhH------HHHHHHhccCCeEEEEeC
Q psy7834 278 EGHAAEGPYDVIYVGGAVHHYP------FKLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 278 ~~~~~~~~fD~i~s~~~~~~~~------~~~~~~L~pgG~l~~~~~ 317 (492)
+.+.++++||+|+++.+++++. .++.++|+|||.+++...
T Consensus 91 ~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 91 KLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred hCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 7766678899999999988774 378999999999999753
No 71
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.45 E-value=2.5e-13 Score=133.07 Aligned_cols=98 Identities=20% Similarity=0.305 Sum_probs=83.6
Q ss_pred CCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEE
Q psy7834 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVI 289 (492)
Q Consensus 210 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i 289 (492)
.++.+|||+|||+|.++..+++.. +..+|+++|+|++|++.|+++... .+++++.+|+.+.+.++++||+|
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~--------~~i~~i~gD~e~lp~~~~sFDvV 182 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL--------KECKIIEGDAEDLPFPTDYADRY 182 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhc--------cCCeEEeccHHhCCCCCCceeEE
Confidence 467899999999999999999876 457899999999999999987542 36889999998766667889999
Q ss_pred EecCcchhhHH------HHHHHhccCCeEEEEe
Q psy7834 290 YVGGAVHHYPF------KLMDQLKPGGVMWFTI 316 (492)
Q Consensus 290 ~s~~~~~~~~~------~~~~~L~pgG~l~~~~ 316 (492)
+++.+++++++ ++.++|||||++++..
T Consensus 183 Is~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 183 VSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred EEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 99998887653 8999999999998753
No 72
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.45 E-value=4.4e-13 Score=128.40 Aligned_cols=97 Identities=24% Similarity=0.368 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhc---CCCCccccCceEEEec
Q psy7834 43 QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS---GNPEFVKDGRIKFVLG 119 (492)
Q Consensus 43 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~---~~~~~~~~~~v~~~~~ 119 (492)
.+.+++++ .+.++.+|||+|||||.++..+++..+++++|+|+|+|++|++.|+++... ... .+++++++
T Consensus 62 r~~~~~~~--~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~-----~~i~~~~~ 134 (261)
T PLN02233 62 KRMAVSWS--GAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCY-----KNIEWIEG 134 (261)
T ss_pred HHHHHHHh--CCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccC-----CCeEEEEc
Confidence 34445555 677889999999999999999999876668999999999999999877531 122 58999999
Q ss_pred CCCCCCCCCCcccceeccCcccccccc
Q psy7834 120 DGRKGYLDEAPYDIIHVGGSIEDIPEG 146 (492)
Q Consensus 120 d~~~~~~~~~~~D~i~~~~~~~~l~~~ 146 (492)
|++++++++++||+|+++.+++++.+.
T Consensus 135 d~~~lp~~~~sfD~V~~~~~l~~~~d~ 161 (261)
T PLN02233 135 DATDLPFDDCYFDAITMGYGLRNVVDR 161 (261)
T ss_pred ccccCCCCCCCEeEEEEecccccCCCH
Confidence 999999999999999999888876543
No 73
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.45 E-value=1e-14 Score=118.42 Aligned_cols=91 Identities=21% Similarity=0.389 Sum_probs=59.4
Q ss_pred EEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCc--CCCCccEEEecC
Q psy7834 216 LDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHA--AEGPYDVIYVGG 293 (492)
Q Consensus 216 LDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD~i~s~~ 293 (492)
||+|||+|.++..+++.. +..+++|+|+|+.|++.|++++.... ..+......+..+... ..++||+|++..
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~ 74 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELG-----NDNFERLRFDVLDLFDYDPPESFDLVVASN 74 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT--------EEEEE--SSS---CCC----SEEEEE-
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC-----CcceeEEEeecCChhhcccccccceehhhh
Confidence 799999999999999987 78899999999999999998887743 2234444444333222 225899999999
Q ss_pred cchhhHH------HHHHHhccCCeE
Q psy7834 294 AVHHYPF------KLMDQLKPGGVM 312 (492)
Q Consensus 294 ~~~~~~~------~~~~~L~pgG~l 312 (492)
++||+++ ++.+.|||||+|
T Consensus 75 vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 75 VLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred hHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 9999964 788999999986
No 74
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.45 E-value=4.7e-13 Score=122.50 Aligned_cols=102 Identities=23% Similarity=0.305 Sum_probs=84.1
Q ss_pred CCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCC---cCCCCcc
Q psy7834 211 PGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGH---AAEGPYD 287 (492)
Q Consensus 211 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD 287 (492)
...++||||||+|.++..++++. |..+|+|+|+|+.|++.|++++...+ ..|++++++|+.+.+ .+++++|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~-----l~ni~~i~~d~~~~~~~~~~~~~~d 89 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLG-----LKNLHVLCGDANELLDKFFPDGSLS 89 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhC-----CCCEEEEccCHHHHHHhhCCCCcee
Confidence 45699999999999999999986 78899999999999999999987753 358999999986532 3456899
Q ss_pred EEEecCcchh--------------hHHHHHHHhccCCeEEEEeCC
Q psy7834 288 VIYVGGAVHH--------------YPFKLMDQLKPGGVMWFTIGN 318 (492)
Q Consensus 288 ~i~s~~~~~~--------------~~~~~~~~L~pgG~l~~~~~~ 318 (492)
.|+++...+| +..++.++|||||.+++....
T Consensus 90 ~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 90 KVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred EEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 9998865432 345889999999999997643
No 75
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.1e-12 Score=120.21 Aligned_cols=127 Identities=33% Similarity=0.480 Sum_probs=104.7
Q ss_pred CCcccChHHHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCc
Q psy7834 189 GSVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGR 268 (492)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~ 268 (492)
+.++-.|.=...++..+. +.||.+|+|.|+|||.++..||..+++.|+|+.+|+.++.++.|++|++..+ ..++
T Consensus 74 ~tQiIyPKD~~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~----l~d~ 147 (256)
T COG2519 74 RTQIIYPKDAGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG----LGDR 147 (256)
T ss_pred CCceecCCCHHHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc----cccc
Confidence 444545544566666665 8999999999999999999999999999999999999999999999999864 2345
Q ss_pred EEEEEccCCCCCcCCCCccEEEecCcch-hhHHHHHHHhccCCeEEEEeCCCcce
Q psy7834 269 VQFVDGDGREGHAAEGPYDVIYVGGAVH-HYPFKLMDQLKPGGVMWFTIGNAEEM 322 (492)
Q Consensus 269 v~~~~~d~~~~~~~~~~fD~i~s~~~~~-~~~~~~~~~L~pgG~l~~~~~~~~~~ 322 (492)
+++..+|..+...++ .||+||....-+ +..+.+.+.|+|||.+++.+++.+|.
T Consensus 148 v~~~~~Dv~~~~~~~-~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv 201 (256)
T COG2519 148 VTLKLGDVREGIDEE-DVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSPTVEQV 201 (256)
T ss_pred eEEEecccccccccc-ccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcCCHHHH
Confidence 999999998765554 899999886554 34578999999999999988877643
No 76
>PRK06922 hypothetical protein; Provisional
Probab=99.44 E-value=9.5e-13 Score=136.59 Aligned_cols=101 Identities=19% Similarity=0.335 Sum_probs=84.4
Q ss_pred CCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCC--cCCCCcc
Q psy7834 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGH--AAEGPYD 287 (492)
Q Consensus 210 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD 287 (492)
.++.+|||+|||+|.++..+++.. +.++|+|+|+|+.|++.|+++....+ .+++++++|..+.+ .++++||
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g------~~ie~I~gDa~dLp~~fedeSFD 489 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEG------RSWNVIKGDAINLSSSFEKESVD 489 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC------CCeEEEEcchHhCccccCCCCEE
Confidence 467899999999999999999876 78899999999999999998875432 36888999987654 4568899
Q ss_pred EEEecCcchhhH-------------------HHHHHHhccCCeEEEEeC
Q psy7834 288 VIYVGGAVHHYP-------------------FKLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 288 ~i~s~~~~~~~~-------------------~~~~~~L~pgG~l~~~~~ 317 (492)
+|+++..+|++. .+++++|||||++++..+
T Consensus 490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 999998887641 277899999999999754
No 77
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.44 E-value=1.6e-12 Score=126.24 Aligned_cols=137 Identities=23% Similarity=0.307 Sum_probs=97.9
Q ss_pred CCCCCCcccCCCCcccChHHHHHHHHHHHhc--cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q psy7834 178 PYWDIPQSLGFGSVMSSPKVHAQALEILKDY--LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKS 255 (492)
Q Consensus 178 ~y~d~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~ 255 (492)
.|+...+.++.+..+++|.....+...+... ..++.+|||+|||+|.++..++... +..+|+|+|+|+.+++.|++|
T Consensus 79 ~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n 157 (284)
T TIGR00536 79 EFYGLEFFVNEHVLIPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEEN 157 (284)
T ss_pred eEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHH
Confidence 4555556666666677765543333333211 1223699999999999999999886 667999999999999999999
Q ss_pred HHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEEecCcc-------------hh------------------hHHHHHH
Q psy7834 256 MHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAV-------------HH------------------YPFKLMD 304 (492)
Q Consensus 256 ~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~s~~~~-------------~~------------------~~~~~~~ 304 (492)
+..++ ...+++++++|+.+.. ..++||+|+||... .+ +..++.+
T Consensus 158 ~~~~~----~~~~v~~~~~d~~~~~-~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~ 232 (284)
T TIGR00536 158 AEKNQ----LEHRVEFIQSNLFEPL-AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPD 232 (284)
T ss_pred HHHcC----CCCcEEEEECchhccC-cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHH
Confidence 98754 1235999999986533 33479999998321 11 1235678
Q ss_pred HhccCCeEEEEeCCCc
Q psy7834 305 QLKPGGVMWFTIGNAE 320 (492)
Q Consensus 305 ~L~pgG~l~~~~~~~~ 320 (492)
.|+|||.+++.++..+
T Consensus 233 ~L~~gG~l~~e~g~~q 248 (284)
T TIGR00536 233 YLKPNGFLVCEIGNWQ 248 (284)
T ss_pred hccCCCEEEEEECccH
Confidence 9999999999887654
No 78
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.43 E-value=1.5e-12 Score=129.41 Aligned_cols=101 Identities=19% Similarity=0.297 Sum_probs=81.8
Q ss_pred CCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEEe
Q psy7834 212 GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYV 291 (492)
Q Consensus 212 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~s 291 (492)
+.+|||+|||+|.++..++++. |..+|+++|+|+.|++.|++|+..++.. ...+++++.+|..... ..++||+|+|
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~--~~~~v~~~~~D~l~~~-~~~~fDlIls 304 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPE--ALDRCEFMINNALSGV-EPFRFNAVLC 304 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcc--cCceEEEEEccccccC-CCCCEEEEEE
Confidence 4699999999999999999986 7889999999999999999999876421 1237899999975432 3458999999
Q ss_pred cCcchhh-----------HHHHHHHhccCCeEEEEe
Q psy7834 292 GGAVHHY-----------PFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 292 ~~~~~~~-----------~~~~~~~L~pgG~l~~~~ 316 (492)
|..+|.. ..++.+.|+|||.|++..
T Consensus 305 NPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 305 NPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 9876532 236789999999999964
No 79
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.43 E-value=1.9e-12 Score=123.42 Aligned_cols=105 Identities=30% Similarity=0.338 Sum_probs=79.2
Q ss_pred HHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCC
Q psy7834 198 HAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGR 277 (492)
Q Consensus 198 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 277 (492)
...+++.+...+.++.+|||+|||+|.++..+++.. . .+|+|+|+|+.|++.|++|+..++. ..++.+..+|
T Consensus 106 t~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g-~-~~v~giDis~~~l~~A~~n~~~~~~----~~~~~~~~~~-- 177 (250)
T PRK00517 106 TRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLG-A-KKVLAVDIDPQAVEAARENAELNGV----ELNVYLPQGD-- 177 (250)
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcC-C-CeEEEEECCHHHHHHHHHHHHHcCC----CceEEEccCC--
Confidence 345666665556788999999999999998877653 3 3699999999999999999987541 1234333332
Q ss_pred CCCcCCCCccEEEecCcchhh---HHHHHHHhccCCeEEEEe
Q psy7834 278 EGHAAEGPYDVIYVGGAVHHY---PFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 278 ~~~~~~~~fD~i~s~~~~~~~---~~~~~~~L~pgG~l~~~~ 316 (492)
.+||+|+++...+.+ ..++.+.|||||+++++.
T Consensus 178 ------~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsg 213 (250)
T PRK00517 178 ------LKADVIVANILANPLLELAPDLARLLKPGGRLILSG 213 (250)
T ss_pred ------CCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 279999998654433 358899999999999974
No 80
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.43 E-value=2.3e-12 Score=118.36 Aligned_cols=119 Identities=24% Similarity=0.405 Sum_probs=90.4
Q ss_pred ccChHHHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEE
Q psy7834 192 MSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQF 271 (492)
Q Consensus 192 ~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~ 271 (492)
++.+.+...+++.+. +.++.+|||+|||+|.++..+++.. +.++|+++|+|++|++.|++|++..+ ..++++
T Consensus 23 ~t~~~v~~~l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~-----~~~v~~ 94 (196)
T PRK07402 23 LTKREVRLLLISQLR--LEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFG-----VKNVEV 94 (196)
T ss_pred CCHHHHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhC-----CCCeEE
Confidence 445555555666664 5678999999999999999998765 66899999999999999999998753 357999
Q ss_pred EEccCCCCCc-CCCCccEEEecCc--chhhHHHHHHHhccCCeEEEEeCC
Q psy7834 272 VDGDGREGHA-AEGPYDVIYVGGA--VHHYPFKLMDQLKPGGVMWFTIGN 318 (492)
Q Consensus 272 ~~~d~~~~~~-~~~~fD~i~s~~~--~~~~~~~~~~~L~pgG~l~~~~~~ 318 (492)
+.+|+.+... ....+|.++.... +..+..++.+.|+|||++++....
T Consensus 95 ~~~d~~~~~~~~~~~~d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 95 IEGSAPECLAQLAPAPDRVCIEGGRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred EECchHHHHhhCCCCCCEEEEECCcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 9999754221 1234677776533 245557899999999999997643
No 81
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.43 E-value=6.8e-13 Score=124.60 Aligned_cols=99 Identities=19% Similarity=0.247 Sum_probs=82.9
Q ss_pred CceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEEec
Q psy7834 213 AKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVG 292 (492)
Q Consensus 213 ~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~s~ 292 (492)
.+|||||||+|.++..+++.. +..+|+|+|+|+++++.|++++...+ ...+++++.+|....+. .++||+|++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~g----l~~~i~~~~~d~~~~~~-~~~fD~I~~~ 74 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALG----LQGRIRIFYRDSAKDPF-PDTYDLVFGF 74 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcC----CCcceEEEecccccCCC-CCCCCEeehH
Confidence 379999999999999999886 56789999999999999999987754 23578999999865433 4589999999
Q ss_pred CcchhhHH------HHHHHhccCCeEEEEeC
Q psy7834 293 GAVHHYPF------KLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 293 ~~~~~~~~------~~~~~L~pgG~l~~~~~ 317 (492)
.+++++++ ++.++|||||++++...
T Consensus 75 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 75 EVIHHIKDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHHHhCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 88887753 78999999999999653
No 82
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.42 E-value=7.7e-13 Score=116.32 Aligned_cols=86 Identities=27% Similarity=0.446 Sum_probs=73.5
Q ss_pred CCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCC--CCCCccc
Q psy7834 55 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY--LDEAPYD 132 (492)
Q Consensus 55 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D 132 (492)
+++.+|||+|||+|.++..+++..++.++++|+|+|++|++.|++++++.++ ++++|+++|+++++ ++ ++||
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~-----~ni~~~~~d~~~l~~~~~-~~~D 75 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL-----DNIEFIQGDIEDLPQELE-EKFD 75 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS-----TTEEEEESBTTCGCGCSS-TTEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc-----cccceEEeehhccccccC-CCee
Confidence 4678999999999999999996555668999999999999999999988887 69999999999966 33 7999
Q ss_pred ceeccCcccccccc
Q psy7834 133 IIHVGGSIEDIPEG 146 (492)
Q Consensus 133 ~i~~~~~~~~l~~~ 146 (492)
+|++..+++.+.+.
T Consensus 76 ~I~~~~~l~~~~~~ 89 (152)
T PF13847_consen 76 IIISNGVLHHFPDP 89 (152)
T ss_dssp EEEEESTGGGTSHH
T ss_pred EEEEcCchhhccCH
Confidence 99999887654443
No 83
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.42 E-value=2.7e-13 Score=119.83 Aligned_cols=94 Identities=24% Similarity=0.349 Sum_probs=73.1
Q ss_pred CCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEEe
Q psy7834 212 GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYV 291 (492)
Q Consensus 212 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~s 291 (492)
-.++||+|||.|.+|..||.++. +++++|+|+.+++.|++++.. .++|+++++|+.+. .+.++||+|+.
T Consensus 44 y~~alEvGCs~G~lT~~LA~rCd---~LlavDis~~Al~~Ar~Rl~~-------~~~V~~~~~dvp~~-~P~~~FDLIV~ 112 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRCD---RLLAVDISPRALARARERLAG-------LPHVEWIQADVPEF-WPEGRFDLIVL 112 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGEE---EEEEEES-HHHHHHHHHHTTT--------SSEEEEES-TTT----SS-EEEEEE
T ss_pred cceeEecCCCccHHHHHHHHhhC---ceEEEeCCHHHHHHHHHhcCC-------CCCeEEEECcCCCC-CCCCCeeEEEE
Confidence 36999999999999999999863 699999999999999999875 35899999999764 45689999999
Q ss_pred cCcchhhH---------HHHHHHhccCCeEEEEe
Q psy7834 292 GGAVHHYP---------FKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 292 ~~~~~~~~---------~~~~~~L~pgG~l~~~~ 316 (492)
..+++.+. +++.+.|+|||.|++..
T Consensus 113 SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 113 SEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp ES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 98887664 25678899999999954
No 84
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.42 E-value=1.4e-12 Score=120.02 Aligned_cols=80 Identities=21% Similarity=0.364 Sum_probs=68.3
Q ss_pred ccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCcc
Q psy7834 208 YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYD 287 (492)
Q Consensus 208 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 287 (492)
.++++.+|||+|||+|..+..+++.. +..+++|+|+|++|++.|+++.. ++.+.++|+.+ +.++++||
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~----------~~~~~~~d~~~-~~~~~sfD 107 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLP----------NINIIQGSLFD-PFKDNFFD 107 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCC----------CCcEEEeeccC-CCCCCCEE
Confidence 35678899999999999999998875 56789999999999999987642 46788999877 66678999
Q ss_pred EEEecCcchhhH
Q psy7834 288 VIYVGGAVHHYP 299 (492)
Q Consensus 288 ~i~s~~~~~~~~ 299 (492)
+|+++.+++|++
T Consensus 108 ~V~~~~vL~hl~ 119 (204)
T TIGR03587 108 LVLTKGVLIHIN 119 (204)
T ss_pred EEEECChhhhCC
Confidence 999999998885
No 85
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.42 E-value=1.4e-12 Score=126.81 Aligned_cols=96 Identities=18% Similarity=0.164 Sum_probs=78.8
Q ss_pred CCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEE
Q psy7834 211 PGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIY 290 (492)
Q Consensus 211 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~ 290 (492)
++.+|||+|||+|..+..+++.. .+|+|+|+|+.|++.+++++...+ . ++++...|+.... .+++||+|+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~-----l-~v~~~~~D~~~~~-~~~~fD~I~ 189 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKEN-----L-NIRTGLYDINSAS-IQEEYDFIL 189 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcC-----C-ceEEEEechhccc-ccCCccEEE
Confidence 34599999999999999999863 479999999999999999987753 2 6888888886533 367899999
Q ss_pred ecCcchhhH--------HHHHHHhccCCeEEEEe
Q psy7834 291 VGGAVHHYP--------FKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 291 s~~~~~~~~--------~~~~~~L~pgG~l~~~~ 316 (492)
+..++++++ .++.++|+|||++++.+
T Consensus 190 ~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 190 STVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred EcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999887664 37889999999977643
No 86
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.41 E-value=3.1e-12 Score=119.63 Aligned_cols=133 Identities=31% Similarity=0.392 Sum_probs=100.4
Q ss_pred ccCCCCcccChHHHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCC
Q psy7834 185 SLGFGSVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLM 264 (492)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~ 264 (492)
.+.+..+|.+|.=...++..+. +.||.+|||.|+|+|.+|..|++.++|.|+|+.+|+.++.++.|++|++..+
T Consensus 16 ~l~rrtQIiYpkD~~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g---- 89 (247)
T PF08704_consen 16 SLPRRTQIIYPKDISYILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG---- 89 (247)
T ss_dssp TS-SSS----HHHHHHHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT----
T ss_pred hccCCcceeeCchHHHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC----
Confidence 3445677777776777777776 8999999999999999999999999999999999999999999999999976
Q ss_pred CCCcEEEEEccCCC-CCc--CCCCccEEEecCcchh-hHHHHHHHh-ccCCeEEEEeCCCccee
Q psy7834 265 EGGRVQFVDGDGRE-GHA--AEGPYDVIYVGGAVHH-YPFKLMDQL-KPGGVMWFTIGNAEEML 323 (492)
Q Consensus 265 ~~~~v~~~~~d~~~-~~~--~~~~fD~i~s~~~~~~-~~~~~~~~L-~pgG~l~~~~~~~~~~~ 323 (492)
...++++.+.|+.. ... .+..+|+||....-+| ..+.+.++| ||||++++-.+..+|..
T Consensus 90 l~~~v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~ 153 (247)
T PF08704_consen 90 LDDNVTVHHRDVCEEGFDEELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQ 153 (247)
T ss_dssp CCTTEEEEES-GGCG--STT-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHH
T ss_pred CCCCceeEecceecccccccccCcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHH
Confidence 34689999999853 331 1367999999987766 457899999 99999999888776443
No 87
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.40 E-value=1.6e-12 Score=130.76 Aligned_cols=95 Identities=29% Similarity=0.317 Sum_probs=80.2
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccE
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDV 288 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 288 (492)
++++.+|||||||+|.++..+++.. +.+|+|+|+|++|++.|+++... .++++...|.... +++||+
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~--------l~v~~~~~D~~~l---~~~fD~ 231 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAG--------LPVEIRLQDYRDL---NGQFDR 231 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhcc--------CeEEEEECchhhc---CCCCCE
Confidence 6789999999999999999999875 35899999999999999998743 1478888887653 468999
Q ss_pred EEecCcchhhH--------HHHHHHhccCCeEEEEe
Q psy7834 289 IYVGGAVHHYP--------FKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 289 i~s~~~~~~~~--------~~~~~~L~pgG~l~~~~ 316 (492)
|++..+++|+. .++.++|||||++++..
T Consensus 232 Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 232 IVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred EEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 99998887763 37889999999999965
No 88
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=3.2e-12 Score=122.98 Aligned_cols=135 Identities=26% Similarity=0.322 Sum_probs=101.0
Q ss_pred CCCCCCCcccCCCCcccChHHHHHHHHHHHhccCCCC-ceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q psy7834 177 NPYWDIPQSLGFGSVMSSPKVHAQALEILKDYLKPGA-KVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKS 255 (492)
Q Consensus 177 ~~y~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~ 255 (492)
..|+...+....+..+++|.+...+-..+. ...... +|||+|||||..+..++... +..+|+|+|+|+.+++.|++|
T Consensus 76 ~~f~gl~~~v~~~vliPr~dTe~Lve~~l~-~~~~~~~~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~N 153 (280)
T COG2890 76 AEFGGLRFKVDEGVLIPRPDTELLVEAALA-LLLQLDKRILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALAREN 153 (280)
T ss_pred CeecceeeeeCCCceecCCchHHHHHHHHH-hhhhcCCcEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHH
Confidence 456677777777888899887655444331 122222 79999999999999999987 778999999999999999999
Q ss_pred HHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEEecCcc---h----------------------------hhHHHHHH
Q psy7834 256 MHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAV---H----------------------------HYPFKLMD 304 (492)
Q Consensus 256 ~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~s~~~~---~----------------------------~~~~~~~~ 304 (492)
+..++ ..++.++++|+.+.. .++||+|+||... . .+.+++.+
T Consensus 154 a~~~~-----l~~~~~~~~dlf~~~--~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~ 226 (280)
T COG2890 154 AERNG-----LVRVLVVQSDLFEPL--RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPD 226 (280)
T ss_pred HHHcC-----CccEEEEeeeccccc--CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHH
Confidence 99875 256777887876533 3489999999632 0 01125678
Q ss_pred HhccCCeEEEEeCCCc
Q psy7834 305 QLKPGGVMWFTIGNAE 320 (492)
Q Consensus 305 ~L~pgG~l~~~~~~~~ 320 (492)
.|+|||.+++..+..+
T Consensus 227 ~l~~~g~l~le~g~~q 242 (280)
T COG2890 227 ILKPGGVLILEIGLTQ 242 (280)
T ss_pred HcCCCcEEEEEECCCc
Confidence 9999999999887554
No 89
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.40 E-value=5.2e-12 Score=120.74 Aligned_cols=101 Identities=29% Similarity=0.375 Sum_probs=81.6
Q ss_pred CCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEE
Q psy7834 211 PGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIY 290 (492)
Q Consensus 211 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~ 290 (492)
.+.+|||+|||+|.++..+++.. +..+++|+|+|+.+++.|++++...+ ..+++++++|+.+ ..+.++||+|+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~-~~~~~~fD~Vi 159 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLG-----LDNVTFLQSDWFE-PLPGGKFDLIV 159 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcC-----CCeEEEEECchhc-cCcCCceeEEE
Confidence 35699999999999999999886 66799999999999999999988753 3479999999866 33467899999
Q ss_pred ecCcch--------------------------------hhHHHHHHHhccCCeEEEEeCC
Q psy7834 291 VGGAVH--------------------------------HYPFKLMDQLKPGGVMWFTIGN 318 (492)
Q Consensus 291 s~~~~~--------------------------------~~~~~~~~~L~pgG~l~~~~~~ 318 (492)
++..+. .+..++.+.|+|||.+++..+.
T Consensus 160 ~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~ 219 (251)
T TIGR03534 160 SNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY 219 (251)
T ss_pred ECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc
Confidence 975321 1224678899999999997654
No 90
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.39 E-value=2.7e-12 Score=120.84 Aligned_cols=121 Identities=21% Similarity=0.239 Sum_probs=83.7
Q ss_pred CCcccChHHHHHHHHHHHhccC--CCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCC
Q psy7834 189 GSVMSSPKVHAQALEILKDYLK--PGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEG 266 (492)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~~~~~--~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~ 266 (492)
|..|...+....-.+.+..++. .|.+|||||||+|+++..++++. ...|+|+|.++....+.+.-.+-.+ ..
T Consensus 91 gi~IDtEWrSd~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~G--A~~ViGiDP~~lf~~QF~~i~~~lg----~~ 164 (315)
T PF08003_consen 91 GIHIDTEWRSDWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRG--AKSVIGIDPSPLFYLQFEAIKHFLG----QD 164 (315)
T ss_pred CEeecccccccchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcC--CCEEEEECCChHHHHHHHHHHHHhC----CC
Confidence 4445444444444455544443 48999999999999999999885 3479999999998776443222211 11
Q ss_pred CcEEEEEccCCCCCcCCCCccEEEecCcchhhHH------HHHHHhccCCeEEEEe
Q psy7834 267 GRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPF------KLMDQLKPGGVMWFTI 316 (492)
Q Consensus 267 ~~v~~~~~d~~~~~~~~~~fD~i~s~~~~~~~~~------~~~~~L~pgG~l~~~~ 316 (492)
..+.++..-+++++. .+.||+|||.+++.|..+ ++.+.|+|||.|++.+
T Consensus 165 ~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 165 PPVFELPLGVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred ccEEEcCcchhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEE
Confidence 233333334445554 678999999999988763 8889999999999964
No 91
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.39 E-value=2.1e-12 Score=123.73 Aligned_cols=105 Identities=18% Similarity=0.297 Sum_probs=78.6
Q ss_pred CCCceEEEeccccH----HHHHHHHHhC----CCCeEEEEeCCHHHHHHHHHHHHh----hCCC--------------C-
Q psy7834 211 PGAKVLDIGSGSGY----LTACMAHMVG----PTGKVYAVEHIEDLVAQANKSMHT----YYPN--------------L- 263 (492)
Q Consensus 211 ~~~~vLDiGcG~G~----~~~~la~~~~----~~~~v~giD~s~~~l~~a~~~~~~----~~~~--------------~- 263 (492)
++.+|||+|||||. ++..+++... ...+|+|+|+|+.|++.|++..-. .+.+ +
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 4555666542 246899999999999999975310 0000 0
Q ss_pred ---CCCCcEEEEEccCCCCCcCCCCccEEEecCcchhhHH--------HHHHHhccCCeEEEE
Q psy7834 264 ---MEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPF--------KLMDQLKPGGVMWFT 315 (492)
Q Consensus 264 ---~~~~~v~~~~~d~~~~~~~~~~fD~i~s~~~~~~~~~--------~~~~~L~pgG~l~~~ 315 (492)
....+|+|.++|+.+.+.+.++||+|+|..+++++++ ++.+.|+|||.|++.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 0013689999999876666789999999999887752 788999999999984
No 92
>PLN02244 tocopherol O-methyltransferase
Probab=99.39 E-value=1.6e-12 Score=129.32 Aligned_cols=98 Identities=21% Similarity=0.290 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHhc-----CCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceE
Q psy7834 41 FQQAMVLDDLSEEL-----TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIK 115 (492)
Q Consensus 41 ~~~~~~~~~l~~~~-----~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~ 115 (492)
.+...+++++ .+ .++++|||||||+|.++..+++..+ .+|+|||+|+.|++.|+++.++.++. ++++
T Consensus 100 ~~~~~~l~~~--~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g--~~v~gvD~s~~~i~~a~~~~~~~g~~----~~v~ 171 (340)
T PLN02244 100 RMIEESLAWA--GVPDDDEKRPKRIVDVGCGIGGSSRYLARKYG--ANVKGITLSPVQAARANALAAAQGLS----DKVS 171 (340)
T ss_pred HHHHHHHHhc--CCCcccCCCCCeEEEecCCCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHhcCCC----CceE
Confidence 3344455555 44 6788999999999999999999864 79999999999999999998887763 6899
Q ss_pred EEecCCCCCCCCCCcccceeccCcccccccc
Q psy7834 116 FVLGDGRKGYLDEAPYDIIHVGGSIEDIPEG 146 (492)
Q Consensus 116 ~~~~d~~~~~~~~~~~D~i~~~~~~~~l~~~ 146 (492)
|+++|+.++++++++||+|++..+++++.+.
T Consensus 172 ~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~ 202 (340)
T PLN02244 172 FQVADALNQPFEDGQFDLVWSMESGEHMPDK 202 (340)
T ss_pred EEEcCcccCCCCCCCccEEEECCchhccCCH
Confidence 9999999999888999999999888776553
No 93
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.39 E-value=2.5e-12 Score=121.41 Aligned_cols=96 Identities=20% Similarity=0.441 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCC
Q psy7834 43 QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR 122 (492)
Q Consensus 43 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 122 (492)
++.+++.+ .+.++++|||+|||+|..+..+++..++.++|+|+|++++|++.|+++....++ ++++++++|++
T Consensus 34 ~~~~l~~l--~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~v~~~~~d~~ 106 (231)
T TIGR02752 34 RKDTMKRM--NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-----HNVELVHGNAM 106 (231)
T ss_pred HHHHHHhc--CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-----CceEEEEechh
Confidence 45566666 677889999999999999999999876668999999999999999999877666 68999999999
Q ss_pred CCCCCCCcccceeccCccccccc
Q psy7834 123 KGYLDEAPYDIIHVGGSIEDIPE 145 (492)
Q Consensus 123 ~~~~~~~~~D~i~~~~~~~~l~~ 145 (492)
..++++++||+|+++..++++.+
T Consensus 107 ~~~~~~~~fD~V~~~~~l~~~~~ 129 (231)
T TIGR02752 107 ELPFDDNSFDYVTIGFGLRNVPD 129 (231)
T ss_pred cCCCCCCCccEEEEecccccCCC
Confidence 88877889999999877665543
No 94
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.38 E-value=2.5e-12 Score=106.76 Aligned_cols=78 Identities=28% Similarity=0.497 Sum_probs=65.3
Q ss_pred CCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCccccee
Q psy7834 56 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIH 135 (492)
Q Consensus 56 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~ 135 (492)
|+.+|||+|||+|.++..+++.. +..+|+|+|+|++|++.|+++..+.+.. .+++++++|+.......++||+|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~----~~i~~~~~d~~~~~~~~~~~D~v~ 75 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLS----DRITFVQGDAEFDPDFLEPFDLVI 75 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTT----TTEEEEESCCHGGTTTSSCEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCC----CCeEEEECccccCcccCCCCCEEE
Confidence 57899999999999999999954 3489999999999999999999666553 799999999922222346799999
Q ss_pred ccC
Q psy7834 136 VGG 138 (492)
Q Consensus 136 ~~~ 138 (492)
+..
T Consensus 76 ~~~ 78 (112)
T PF12847_consen 76 CSG 78 (112)
T ss_dssp ECS
T ss_pred ECC
Confidence 988
No 95
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.38 E-value=3.9e-12 Score=119.61 Aligned_cols=112 Identities=18% Similarity=0.309 Sum_probs=89.3
Q ss_pred HHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCC
Q psy7834 199 AQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGRE 278 (492)
Q Consensus 199 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 278 (492)
...+..+.. ..++.+|||+|||+|+.+..+++..++.++|+++|+++++++.|++++++++ ...+++++.+|+.+
T Consensus 57 g~~L~~l~~-~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g----l~~~i~~~~gda~~ 131 (234)
T PLN02781 57 GLFLSMLVK-IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG----VDHKINFIQSDALS 131 (234)
T ss_pred HHHHHHHHH-HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEEccHHH
Confidence 444555543 4567899999999999999999887678899999999999999999999875 23579999999865
Q ss_pred CCc------CCCCccEEEecCcch---hhHHHHHHHhccCCeEEEE
Q psy7834 279 GHA------AEGPYDVIYVGGAVH---HYPFKLMDQLKPGGVMWFT 315 (492)
Q Consensus 279 ~~~------~~~~fD~i~s~~~~~---~~~~~~~~~L~pgG~l~~~ 315 (492)
... ..++||+||.+..-. .+.+.+.+.|+|||.+++.
T Consensus 132 ~L~~l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 132 ALDQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred HHHHHHhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 421 146899999986543 3445889999999998873
No 96
>KOG1541|consensus
Probab=99.38 E-value=1.7e-12 Score=114.98 Aligned_cols=113 Identities=22% Similarity=0.207 Sum_probs=89.1
Q ss_pred cChHHHHHHHHHHHhccCC--CCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEE
Q psy7834 193 SSPKVHAQALEILKDYLKP--GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQ 270 (492)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~~--~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~ 270 (492)
.+..+.+.+++++. ++. ..-|||||||||..+..|.... -..+|+|+|+.|++.|.++--+ -.
T Consensus 32 IQ~em~eRaLELLa--lp~~~~~~iLDIGCGsGLSg~vL~~~G---h~wiGvDiSpsML~~a~~~e~e----------gd 96 (270)
T KOG1541|consen 32 IQAEMAERALELLA--LPGPKSGLILDIGCGSGLSGSVLSDSG---HQWIGVDISPSMLEQAVERELE----------GD 96 (270)
T ss_pred ehHHHHHHHHHHhh--CCCCCCcEEEEeccCCCcchheeccCC---ceEEeecCCHHHHHHHHHhhhh----------cC
Confidence 46677888899887 555 6789999999999998887653 3699999999999999873211 25
Q ss_pred EEEccCCC-CCcCCCCccEEEecCcchhhHH-----------------HHHHHhccCCeEEEEeCCCc
Q psy7834 271 FVDGDGRE-GHAAEGPYDVIYVGGAVHHYPF-----------------KLMDQLKPGGVMWFTIGNAE 320 (492)
Q Consensus 271 ~~~~d~~~-~~~~~~~fD~i~s~~~~~~~~~-----------------~~~~~L~pgG~l~~~~~~~~ 320 (492)
++.+|+-+ .++..++||.++|..+++|+-+ .++.+|++|++.++++-+.+
T Consensus 97 lil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen 164 (270)
T KOG1541|consen 97 LILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPEN 164 (270)
T ss_pred eeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccc
Confidence 77888754 4667899999999988877642 47889999999999875543
No 97
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.37 E-value=8.8e-12 Score=112.71 Aligned_cols=97 Identities=20% Similarity=0.207 Sum_probs=78.3
Q ss_pred CCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEE
Q psy7834 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVI 289 (492)
Q Consensus 210 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i 289 (492)
.++.+|||+|||+|.++..+++.. + +|+++|+|++|++.+++++..++ .+++++.+|..+.. .++||+|
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~~~--~~~fD~V 86 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKG-K--CILTTDINPFAVKELRENAKLNN------VGLDVVMTDLFKGV--RGKFDVI 86 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcC-C--EEEEEECCHHHHHHHHHHHHHcC------CceEEEEccccccc--CCcccEE
Confidence 456799999999999999999875 3 79999999999999999987643 25889999986533 3589999
Q ss_pred EecCcchh---------------------------hHHHHHHHhccCCeEEEEeC
Q psy7834 290 YVGGAVHH---------------------------YPFKLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 290 ~s~~~~~~---------------------------~~~~~~~~L~pgG~l~~~~~ 317 (492)
+++..+++ +.+++.++|||||++++...
T Consensus 87 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 87 LFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred EECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 99865532 23467799999999988653
No 98
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.37 E-value=5.5e-12 Score=119.54 Aligned_cols=111 Identities=28% Similarity=0.519 Sum_probs=88.6
Q ss_pred HHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCC
Q psy7834 200 QALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREG 279 (492)
Q Consensus 200 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 279 (492)
.++..+. ..++.+|||+|||+|.++..+++.+++..+++++|+++.+++.+++++...+ ...++.++.+|+.+.
T Consensus 42 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~~ 115 (239)
T PRK00216 42 KTIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG----LSGNVEFVQGDAEAL 115 (239)
T ss_pred HHHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc----cccCeEEEecccccC
Confidence 3444443 4467899999999999999999987436799999999999999999876532 134689999998776
Q ss_pred CcCCCCccEEEecCcchhhH------HHHHHHhccCCeEEEEe
Q psy7834 280 HAAEGPYDVIYVGGAVHHYP------FKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 280 ~~~~~~fD~i~s~~~~~~~~------~~~~~~L~pgG~l~~~~ 316 (492)
+...++||+|+++..+++++ .++.+.|+|||++++..
T Consensus 116 ~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 116 PFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred CCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 55567899999988877654 37889999999998753
No 99
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.37 E-value=1.3e-12 Score=109.48 Aligned_cols=100 Identities=27% Similarity=0.378 Sum_probs=80.2
Q ss_pred CCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCC--cCCCCccEE
Q psy7834 212 GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGH--AAEGPYDVI 289 (492)
Q Consensus 212 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~i 289 (492)
|.+|||+|||+|.++..+++.. ..+++|+|+++..++.|+.++...+ ...+++++++|+.+.. ...++||+|
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~D~I 74 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNG----LDDRVEVIVGDARDLPEPLPDGKFDLI 74 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCT----TTTTEEEEESHHHHHHHTCTTT-EEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHcc----CCceEEEEECchhhchhhccCceeEEE
Confidence 5689999999999999999885 5689999999999999999998854 2357999999987653 456899999
Q ss_pred EecCcchh--------------hHHHHHHHhccCCeEEEEeC
Q psy7834 290 YVGGAVHH--------------YPFKLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 290 ~s~~~~~~--------------~~~~~~~~L~pgG~l~~~~~ 317 (492)
+++..+.. +.+++.+.|||||.+++.++
T Consensus 75 v~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 75 VTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp EE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99875532 12478899999999998653
No 100
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.36 E-value=5.9e-12 Score=124.55 Aligned_cols=107 Identities=19% Similarity=0.260 Sum_probs=83.5
Q ss_pred HHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCC
Q psy7834 199 AQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGRE 278 (492)
Q Consensus 199 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 278 (492)
..+++.+.. ....+|||+|||+|.++..++++. +..+|+++|+|+.|++.|+++++.++. ..+++.+|...
T Consensus 186 ~lLl~~l~~--~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l------~~~~~~~D~~~ 256 (342)
T PRK09489 186 QLLLSTLTP--HTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGL------EGEVFASNVFS 256 (342)
T ss_pred HHHHHhccc--cCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC------CCEEEEccccc
Confidence 344555532 234589999999999999999986 677899999999999999999988641 34677888754
Q ss_pred CCcCCCCccEEEecCcchhh-----------HHHHHHHhccCCeEEEEe
Q psy7834 279 GHAAEGPYDVIYVGGAVHHY-----------PFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 279 ~~~~~~~fD~i~s~~~~~~~-----------~~~~~~~L~pgG~l~~~~ 316 (492)
. ..++||+|+|+..+|+. ..++.+.|||||.|++..
T Consensus 257 ~--~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 257 D--IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred c--cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 2 25689999999888742 236789999999999864
No 101
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.36 E-value=1.9e-12 Score=114.72 Aligned_cols=100 Identities=32% Similarity=0.493 Sum_probs=77.0
Q ss_pred HHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCC
Q psy7834 201 ALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGH 280 (492)
Q Consensus 201 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 280 (492)
.+..+.....++.+|||+|||+|.++..+++.. . +|+|+|+|+.+++. . ++.....+.....
T Consensus 12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~--~~~g~D~~~~~~~~------~---------~~~~~~~~~~~~~ 73 (161)
T PF13489_consen 12 LLERLLPRLKPGKRVLDIGCGTGSFLRALAKRG-F--EVTGVDISPQMIEK------R---------NVVFDNFDAQDPP 73 (161)
T ss_dssp HHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTT-S--EEEEEESSHHHHHH------T---------TSEEEEEECHTHH
T ss_pred HHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhC-C--EEEEEECCHHHHhh------h---------hhhhhhhhhhhhh
Confidence 334443335778999999999999999997763 3 89999999999988 1 1233333333334
Q ss_pred cCCCCccEEEecCcchhhHH------HHHHHhccCCeEEEEeCC
Q psy7834 281 AAEGPYDVIYVGGAVHHYPF------KLMDQLKPGGVMWFTIGN 318 (492)
Q Consensus 281 ~~~~~fD~i~s~~~~~~~~~------~~~~~L~pgG~l~~~~~~ 318 (492)
.++++||+|+++.+++|+++ ++.+.|||||.+++.++.
T Consensus 74 ~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 74 FPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp CHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred ccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 56789999999999999975 789999999999998754
No 102
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.36 E-value=7.4e-12 Score=115.69 Aligned_cols=103 Identities=26% Similarity=0.227 Sum_probs=76.9
Q ss_pred CCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCC-------CCCCCCcEEEEEccCCCCCcC
Q psy7834 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYP-------NLMEGGRVQFVDGDGREGHAA 282 (492)
Q Consensus 210 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-------~~~~~~~v~~~~~d~~~~~~~ 282 (492)
+++.+|||+|||.|..+..||+++. +|+|+|+|+.+++.+.+....... ......+++++++|+.+....
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 5678999999999999999998743 699999999999986443211000 000124689999999775432
Q ss_pred -CCCccEEEecCcchhhHH--------HHHHHhccCCeEEEE
Q psy7834 283 -EGPYDVIYVGGAVHHYPF--------KLMDQLKPGGVMWFT 315 (492)
Q Consensus 283 -~~~fD~i~s~~~~~~~~~--------~~~~~L~pgG~l~~~ 315 (492)
.++||.|+-...+++++. .+.++|||||++++.
T Consensus 110 ~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 110 DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 467999998888777763 688999999986664
No 103
>PRK14967 putative methyltransferase; Provisional
Probab=99.36 E-value=1.5e-11 Score=115.25 Aligned_cols=100 Identities=27% Similarity=0.294 Sum_probs=79.3
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccE
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDV 288 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 288 (492)
+.++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.+++|+..++ .+++++++|+... ..+++||+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~--~~~v~~vD~s~~~l~~a~~n~~~~~------~~~~~~~~d~~~~-~~~~~fD~ 104 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAG--AGSVTAVDISRRAVRSARLNALLAG------VDVDVRRGDWARA-VEFRPFDV 104 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhC------CeeEEEECchhhh-ccCCCeeE
Confidence 5678899999999999999998763 3589999999999999999987753 2578899998653 34578999
Q ss_pred EEecCcch---------------------------hhHHHHHHHhccCCeEEEEeC
Q psy7834 289 IYVGGAVH---------------------------HYPFKLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 289 i~s~~~~~---------------------------~~~~~~~~~L~pgG~l~~~~~ 317 (492)
|+++.... .+.+++.++|||||++++...
T Consensus 105 Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 105 VVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred EEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 99985321 223467899999999998543
No 104
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.35 E-value=1.3e-11 Score=117.23 Aligned_cols=132 Identities=15% Similarity=0.161 Sum_probs=89.8
Q ss_pred CCCCCCcccCCCCcccChHHHHHHHHHHHhcc---CCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q psy7834 178 PYWDIPQSLGFGSVMSSPKVHAQALEILKDYL---KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 254 (492)
Q Consensus 178 ~y~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~ 254 (492)
.|....+..+.+..++++.. ..+++.+...+ .++.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.|++
T Consensus 51 ~f~g~~~~v~~~vf~pr~~T-e~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~ 128 (251)
T TIGR03704 51 EFCGLRIAVDPGVFVPRRRT-EFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARR 128 (251)
T ss_pred eEcCeEEEECCCCcCCCccH-HHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHH
Confidence 34444445554555544433 22233222222 234589999999999999999876 55689999999999999999
Q ss_pred HHHhhCCCCCCCCcEEEEEccCCCCCc--CCCCccEEEecCcch--------------------------------hhHH
Q psy7834 255 SMHTYYPNLMEGGRVQFVDGDGREGHA--AEGPYDVIYVGGAVH--------------------------------HYPF 300 (492)
Q Consensus 255 ~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD~i~s~~~~~--------------------------------~~~~ 300 (492)
|+..++ ++++++|+.+... ..++||+|++|.... .+..
T Consensus 129 N~~~~~--------~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~ 200 (251)
T TIGR03704 129 NLADAG--------GTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAA 200 (251)
T ss_pred HHHHcC--------CEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHH
Confidence 987742 4789999865332 135799999986321 1112
Q ss_pred HHHHHhccCCeEEEEeCCC
Q psy7834 301 KLMDQLKPGGVMWFTIGNA 319 (492)
Q Consensus 301 ~~~~~L~pgG~l~~~~~~~ 319 (492)
.+.+.|+|||++++..+..
T Consensus 201 ~a~~~L~~gG~l~l~~~~~ 219 (251)
T TIGR03704 201 GAPDWLAPGGHLLVETSER 219 (251)
T ss_pred HHHHhcCCCCEEEEEECcc
Confidence 4568999999999977643
No 105
>PLN03075 nicotianamine synthase; Provisional
Probab=99.35 E-value=8.8e-12 Score=118.99 Aligned_cols=101 Identities=20% Similarity=0.193 Sum_probs=80.2
Q ss_pred CCCceEEEeccccHH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh-hCCCCCCCCcEEEEEccCCCCCcCCCCccE
Q psy7834 211 PGAKVLDIGSGSGYL-TACMAHMVGPTGKVYAVEHIEDLVAQANKSMHT-YYPNLMEGGRVQFVDGDGREGHAAEGPYDV 288 (492)
Q Consensus 211 ~~~~vLDiGcG~G~~-~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 288 (492)
++++|+|||||.|-+ +..+++...++++++|+|+++++++.|++.+.. .+ ...+++|..+|+.+.....+.||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~g----L~~rV~F~~~Da~~~~~~l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPD----LSKRMFFHTADVMDVTESLKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccC----ccCCcEEEECchhhcccccCCcCE
Confidence 678999999997754 445554555889999999999999999999854 32 235799999999775434578999
Q ss_pred EEecCcchhhH--------HHHHHHhccCCeEEEEe
Q psy7834 289 IYVGGAVHHYP--------FKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 289 i~s~~~~~~~~--------~~~~~~L~pgG~l~~~~ 316 (492)
|++. +++.+. +++.+.|+|||.+++..
T Consensus 199 VF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 199 VFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9999 665442 48899999999999965
No 106
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.34 E-value=9.9e-12 Score=122.99 Aligned_cols=111 Identities=19% Similarity=0.217 Sum_probs=89.9
Q ss_pred HHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCC
Q psy7834 200 QALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREG 279 (492)
Q Consensus 200 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 279 (492)
.+++.+. ...+..+||||||+|.++..+|++. |...++|+|+++.|++.|.+++...+ ..|+.++++|+...
T Consensus 113 ~~~~~~~--~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~g-----L~NV~~i~~DA~~l 184 (390)
T PRK14121 113 NFLDFIS--KNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLN-----LKNLLIINYDARLL 184 (390)
T ss_pred HHHHHhc--CCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEECCHHHh
Confidence 3344443 3446799999999999999999997 78899999999999999999987753 46899999998643
Q ss_pred --CcCCCCccEEEecCcchh------------hHHHHHHHhccCCeEEEEeCC
Q psy7834 280 --HAAEGPYDVIYVGGAVHH------------YPFKLMDQLKPGGVMWFTIGN 318 (492)
Q Consensus 280 --~~~~~~fD~i~s~~~~~~------------~~~~~~~~L~pgG~l~~~~~~ 318 (492)
..+++++|.|+++...+| +.+++.++|+|||.+.+.+..
T Consensus 185 l~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 185 LELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred hhhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 345789999999877654 345889999999999997643
No 107
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.34 E-value=7.1e-12 Score=112.41 Aligned_cols=96 Identities=19% Similarity=0.121 Sum_probs=74.5
Q ss_pred CCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEE
Q psy7834 211 PGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIY 290 (492)
Q Consensus 211 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~ 290 (492)
++.++||+|||.|..+..||+++. .|+++|+|+..++.+++.+.+.+ -+++..+.|+.+... .+.||+|+
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~---~VtAvD~s~~al~~l~~~a~~~~------l~i~~~~~Dl~~~~~-~~~yD~I~ 99 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGF---DVTAVDISPVALEKLQRLAEEEG------LDIRTRVADLNDFDF-PEEYDFIV 99 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-------TEEEEE-BGCCBS--TTTEEEEE
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHhhcC------ceeEEEEecchhccc-cCCcCEEE
Confidence 456999999999999999999854 59999999999999988777643 248999999866443 46899999
Q ss_pred ecCcchhhH--------HHHHHHhccCCeEEEEe
Q psy7834 291 VGGAVHHYP--------FKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 291 s~~~~~~~~--------~~~~~~L~pgG~l~~~~ 316 (492)
|..+++++. +++.+.++|||.+++.+
T Consensus 100 st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 100 STVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp EESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 987777665 36778899999988743
No 108
>PTZ00146 fibrillarin; Provisional
Probab=99.33 E-value=1.3e-11 Score=117.22 Aligned_cols=114 Identities=27% Similarity=0.334 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHh-ccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEc
Q psy7834 196 KVHAQALEILKD-YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDG 274 (492)
Q Consensus 196 ~~~~~~~~~l~~-~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~ 274 (492)
.+.+.++.-+.. .++++.+|||+|||+|.++..++..+++.++|+++|+|+.|++...+.+.. ..|+.++.+
T Consensus 116 Klaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-------r~NI~~I~~ 188 (293)
T PTZ00146 116 KLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-------RPNIVPIIE 188 (293)
T ss_pred HHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-------cCCCEEEEC
Confidence 344444333332 368899999999999999999999998889999999999866544443332 147889999
Q ss_pred cCCCCC---cCCCCccEEEecCcchhh----HHHHHHHhccCCeEEEEe
Q psy7834 275 DGREGH---AAEGPYDVIYVGGAVHHY----PFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 275 d~~~~~---~~~~~fD~i~s~~~~~~~----~~~~~~~L~pgG~l~~~~ 316 (492)
|+.... ...++||+|+++.+..+- ..++.+.|||||.+++..
T Consensus 189 Da~~p~~y~~~~~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~i 237 (293)
T PTZ00146 189 DARYPQKYRMLVPMVDVIFADVAQPDQARIVALNAQYFLKNGGHFIISI 237 (293)
T ss_pred CccChhhhhcccCCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEEE
Confidence 986421 123579999998765432 237788999999999954
No 109
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.33 E-value=1.2e-11 Score=121.83 Aligned_cols=100 Identities=17% Similarity=0.181 Sum_probs=82.6
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccE
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDV 288 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 288 (492)
+.++.+|||||||+|.++..++++. |..+++++|. +.+++.+++++.+.+ ..++++++.+|+.+...+ .+|+
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~g----l~~rv~~~~~d~~~~~~~--~~D~ 218 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKG----VADRMRGIAVDIYKESYP--EADA 218 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCC----ccceEEEEecCccCCCCC--CCCE
Confidence 5677899999999999999999997 7889999997 799999999988764 235799999998753333 4799
Q ss_pred EEecCcchhhH--------HHHHHHhccCCeEEEEe
Q psy7834 289 IYVGGAVHHYP--------FKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 289 i~s~~~~~~~~--------~~~~~~L~pgG~l~~~~ 316 (492)
|++...+|+.. .++++.|+|||++++..
T Consensus 219 v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 219 VLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred EEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 98888777553 26789999999999863
No 110
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.33 E-value=2.2e-11 Score=118.10 Aligned_cols=133 Identities=28% Similarity=0.444 Sum_probs=93.3
Q ss_pred CCCCCCcccCCCCcccChHHHHHHHHHHHh--ccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q psy7834 178 PYWDIPQSLGFGSVMSSPKVHAQALEILKD--YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKS 255 (492)
Q Consensus 178 ~y~d~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~ 255 (492)
.|++..+..+.+..+++|.... +.+.+.. ...++.+|||+|||+|.++..++... +..+|+|+|+|+.+++.|+++
T Consensus 74 ~f~~~~~~~~~~~lipr~~te~-l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n 151 (275)
T PRK09328 74 EFWGLDFKVSPGVLIPRPETEE-LVEWALEALLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRN 151 (275)
T ss_pred eEcCcEEEECCCceeCCCCcHH-HHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHH
Confidence 3444455555555555554322 2222211 13467799999999999999999987 678999999999999999999
Q ss_pred HHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEEecCcch--------------------------------hhHHHHH
Q psy7834 256 MHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVH--------------------------------HYPFKLM 303 (492)
Q Consensus 256 ~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~s~~~~~--------------------------------~~~~~~~ 303 (492)
+... ...++.++.+|+.... ..++||+|+++.... .+..++.
T Consensus 152 ~~~~-----~~~~i~~~~~d~~~~~-~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~ 225 (275)
T PRK09328 152 AKHG-----LGARVEFLQGDWFEPL-PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAP 225 (275)
T ss_pred HHhC-----CCCcEEEEEccccCcC-CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHH
Confidence 8721 2357999999986533 356899999974321 1112455
Q ss_pred HHhccCCeEEEEeCC
Q psy7834 304 DQLKPGGVMWFTIGN 318 (492)
Q Consensus 304 ~~L~pgG~l~~~~~~ 318 (492)
+.|+|||++++..+.
T Consensus 226 ~~Lk~gG~l~~e~g~ 240 (275)
T PRK09328 226 RYLKPGGWLLLEIGY 240 (275)
T ss_pred HhcccCCEEEEEECc
Confidence 899999999997754
No 111
>KOG1540|consensus
Probab=99.32 E-value=8.2e-12 Score=113.35 Aligned_cols=109 Identities=18% Similarity=0.301 Sum_probs=87.6
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCC-----cEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEe
Q psy7834 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKT-----GKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVL 118 (492)
Q Consensus 44 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~-----~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~ 118 (492)
...+.+| .+..++++||++||||..+..+.+.++.. ++|+.+|||++|++.++++..+.++. ....+.|++
T Consensus 90 d~~v~~L--~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~--~~~~~~w~~ 165 (296)
T KOG1540|consen 90 DMFVSKL--GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK--ASSRVEWVE 165 (296)
T ss_pred HHhhhcc--CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC--cCCceEEEe
Confidence 4555666 77788999999999999999999988543 79999999999999999999886663 122499999
Q ss_pred cCCCCCCCCCCcccceeccCcccccccc---h--hcccccChh
Q psy7834 119 GDGRKGYLDEAPYDIIHVGGSIEDIPEG---V--RFGHIASPK 156 (492)
Q Consensus 119 ~d~~~~~~~~~~~D~i~~~~~~~~l~~~---L--~~~~l~~~~ 156 (492)
+|++++|+++++||+.+.+..+..+.+. + .++++++.+
T Consensus 166 ~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGG 208 (296)
T KOG1540|consen 166 GDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGG 208 (296)
T ss_pred CCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCc
Confidence 9999999999999999998887755443 2 445555443
No 112
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=1.9e-11 Score=115.46 Aligned_cols=108 Identities=28% Similarity=0.374 Sum_probs=85.1
Q ss_pred HHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCC
Q psy7834 199 AQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGRE 278 (492)
Q Consensus 199 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 278 (492)
+.+++.+. ...+.+|||+|||.|.++..+++.. |..+++-+|+|..+++.||+|+..++ ..+..+..+|..+
T Consensus 148 ~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~-----~~~~~v~~s~~~~ 219 (300)
T COG2813 148 RLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANG-----VENTEVWASNLYE 219 (300)
T ss_pred HHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcC-----CCccEEEEecccc
Confidence 44555554 3345599999999999999999997 78899999999999999999999864 2344677777765
Q ss_pred CCcCCCCccEEEecCcch-----------hhHHHHHHHhccCCeEEEEe
Q psy7834 279 GHAAEGPYDVIYVGGAVH-----------HYPFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 279 ~~~~~~~fD~i~s~~~~~-----------~~~~~~~~~L~pgG~l~~~~ 316 (492)
... ++||+|+||..+| .+..+..+.|++||.|.+..
T Consensus 220 ~v~--~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVa 266 (300)
T COG2813 220 PVE--GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVA 266 (300)
T ss_pred ccc--ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEE
Confidence 332 3899999998875 22336789999999999854
No 113
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.31 E-value=1.6e-11 Score=115.12 Aligned_cols=101 Identities=23% Similarity=0.367 Sum_probs=83.8
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccE
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDV 288 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 288 (492)
..++.+|||+|||+|.++..+++..+..++++++|+++.+++.++++... ..+++++.+|+.+.+...++||+
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~-------~~~i~~~~~d~~~~~~~~~~~D~ 109 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL-------PLNIEFIQADAEALPFEDNSFDA 109 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc-------CCCceEEecchhcCCCCCCcEEE
Confidence 34688999999999999999999874337899999999999999988651 24689999998876655678999
Q ss_pred EEecCcchhhH------HHHHHHhccCCeEEEEe
Q psy7834 289 IYVGGAVHHYP------FKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 289 i~s~~~~~~~~------~~~~~~L~pgG~l~~~~ 316 (492)
|+++..+++++ +++.+.|+|||++++..
T Consensus 110 i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 110 VTIAFGLRNVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred EEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 99988877665 37889999999998853
No 114
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.31 E-value=2.4e-11 Score=110.96 Aligned_cols=111 Identities=23% Similarity=0.449 Sum_probs=90.5
Q ss_pred HHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEE-ccCCC
Q psy7834 200 QALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVD-GDGRE 278 (492)
Q Consensus 200 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~-~d~~~ 278 (492)
..+..+.. ..++++||+||++.|+.++.+|...+.+++++++|+++++.+.|++|+++.+ ..++++.+. +|+.+
T Consensus 49 ~~L~~L~~-~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag----~~~~i~~~~~gdal~ 123 (219)
T COG4122 49 ALLRLLAR-LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG----VDDRIELLLGGDALD 123 (219)
T ss_pred HHHHHHHH-hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC----CcceEEEEecCcHHH
Confidence 34444432 5678899999999999999999998668999999999999999999999986 345688888 58765
Q ss_pred CCc--CCCCccEEEecCcchhhH---HHHHHHhccCCeEEEE
Q psy7834 279 GHA--AEGPYDVIYVGGAVHHYP---FKLMDQLKPGGVMWFT 315 (492)
Q Consensus 279 ~~~--~~~~fD~i~s~~~~~~~~---~~~~~~L~pgG~l~~~ 315 (492)
... ..++||+||..+.-...| +.+.++|+|||.+++.
T Consensus 124 ~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 124 VLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred HHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 443 358999999998765555 4788999999999983
No 115
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.31 E-value=1.9e-11 Score=114.36 Aligned_cols=105 Identities=27% Similarity=0.326 Sum_probs=77.9
Q ss_pred HHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCC
Q psy7834 199 AQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGRE 278 (492)
Q Consensus 199 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 278 (492)
..+++.+.....++.+|||+|||+|.++..+++. ..+|+|+|+|++|++.|++++...+ ...++.+.++|+.+
T Consensus 43 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~----~~~~i~~~~~d~~~ 115 (219)
T TIGR02021 43 RKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRD----VAGNVEFEVNDLLS 115 (219)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEECChhh
Confidence 3445555422346789999999999999999875 3479999999999999999987642 12478999999866
Q ss_pred CCcCCCCccEEEecCcchhhHH--------HHHHHhccCCeEE
Q psy7834 279 GHAAEGPYDVIYVGGAVHHYPF--------KLMDQLKPGGVMW 313 (492)
Q Consensus 279 ~~~~~~~fD~i~s~~~~~~~~~--------~~~~~L~pgG~l~ 313 (492)
.. ++||+|++...+++++. ++.+++++++.+.
T Consensus 116 ~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~ 155 (219)
T TIGR02021 116 LC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFT 155 (219)
T ss_pred CC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 43 68999999888776642 4556666554433
No 116
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.31 E-value=2.9e-11 Score=120.00 Aligned_cols=116 Identities=19% Similarity=0.206 Sum_probs=90.0
Q ss_pred ChHHHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEE
Q psy7834 194 SPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVD 273 (492)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~ 273 (492)
.|.+...++.... ++++.+|||.|||||.++..++.. ..+++|+|+++.|++.|++|++.++ ..++.+.+
T Consensus 167 ~~~la~~~~~l~~--~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g-----~~~i~~~~ 236 (329)
T TIGR01177 167 DPKLARAMVNLAR--VTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYG-----IEDFFVKR 236 (329)
T ss_pred CHHHHHHHHHHhC--CCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhC-----CCCCeEEe
Confidence 4455555555443 678899999999999999887664 3479999999999999999998864 33588999
Q ss_pred ccCCCCCcCCCCccEEEecCcc---------------hhhHHHHHHHhccCCeEEEEeCCC
Q psy7834 274 GDGREGHAAEGPYDVIYVGGAV---------------HHYPFKLMDQLKPGGVMWFTIGNA 319 (492)
Q Consensus 274 ~d~~~~~~~~~~fD~i~s~~~~---------------~~~~~~~~~~L~pgG~l~~~~~~~ 319 (492)
+|+.+.+..+++||+|+++..+ ..+.+++.+.|||||++++..+..
T Consensus 237 ~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 237 GDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred cchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 9998776667799999997432 122347889999999999876543
No 117
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.31 E-value=1.2e-11 Score=114.50 Aligned_cols=115 Identities=23% Similarity=0.289 Sum_probs=88.2
Q ss_pred HHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCC
Q psy7834 199 AQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGRE 278 (492)
Q Consensus 199 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 278 (492)
..++..... .....+|||+|||+|.+++.+|++. +..+++|||++++|.+.|+++++.++ ...+++++++|+.+
T Consensus 33 aiLL~~~~~-~~~~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~ln~----l~~ri~v~~~Di~~ 106 (248)
T COG4123 33 AILLAAFAP-VPKKGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVALNP----LEERIQVIEADIKE 106 (248)
T ss_pred HHHHHhhcc-cccCCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHhCc----chhceeEehhhHHH
Confidence 344444432 3447899999999999999999997 45899999999999999999998864 45789999999876
Q ss_pred CCc--CCCCccEEEecCcchhh------------------------HHHHHHHhccCCeEEEEeCCC
Q psy7834 279 GHA--AEGPYDVIYVGGAVHHY------------------------PFKLMDQLKPGGVMWFTIGNA 319 (492)
Q Consensus 279 ~~~--~~~~fD~i~s~~~~~~~------------------------~~~~~~~L~pgG~l~~~~~~~ 319 (492)
... ...+||+|+||..+... .....++|||||++++..++.
T Consensus 107 ~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e 173 (248)
T COG4123 107 FLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE 173 (248)
T ss_pred hhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH
Confidence 542 23469999999754211 124568999999999976543
No 118
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.31 E-value=9.9e-12 Score=114.83 Aligned_cols=93 Identities=25% Similarity=0.353 Sum_probs=74.3
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCC--------
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGH-------- 280 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-------- 280 (492)
++++.+|||+|||+|.++..++++.++.++|+|+|+++ |. ..++++++++|+.+..
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~---------------~~~~v~~i~~D~~~~~~~~~i~~~ 112 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD---------------PIVGVDFLQGDFRDELVLKALLER 112 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc---------------CCCCcEEEecCCCChHHHHHHHHH
Confidence 57889999999999999999999987778999999998 21 1246899999987642
Q ss_pred cCCCCccEEEecCcchh-----------------hHHHHHHHhccCCeEEEEeC
Q psy7834 281 AAEGPYDVIYVGGAVHH-----------------YPFKLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 281 ~~~~~fD~i~s~~~~~~-----------------~~~~~~~~L~pgG~l~~~~~ 317 (492)
...++||+|+|+.+.++ +..++.++|||||.+++.+.
T Consensus 113 ~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 113 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 34578999999875432 22478899999999999654
No 119
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.31 E-value=1e-11 Score=109.82 Aligned_cols=102 Identities=26% Similarity=0.401 Sum_probs=83.5
Q ss_pred HHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCC--c
Q psy7834 204 ILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGH--A 281 (492)
Q Consensus 204 ~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~ 281 (492)
.+.++++||.||||+|||.|.+...|.+. ++.+++|+|++++.+..+.++ .+.++++|+.+.. +
T Consensus 6 ~I~~~I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r------------Gv~Viq~Dld~gL~~f 71 (193)
T PF07021_consen 6 IIAEWIEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR------------GVSVIQGDLDEGLADF 71 (193)
T ss_pred HHHHHcCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc------------CCCEEECCHHHhHhhC
Confidence 34445789999999999999999999875 466899999999998877654 4778999987543 5
Q ss_pred CCCCccEEEecCcchhhHH---HHHHHhccCCeEEEEeCCC
Q psy7834 282 AEGPYDVIYVGGAVHHYPF---KLMDQLKPGGVMWFTIGNA 319 (492)
Q Consensus 282 ~~~~fD~i~s~~~~~~~~~---~~~~~L~pgG~l~~~~~~~ 319 (492)
++++||.|+.+.+++++.+ -+.+.|+-|...++++++.
T Consensus 72 ~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVsFPNF 112 (193)
T PF07021_consen 72 PDQSFDYVILSQTLQAVRRPDEVLEEMLRVGRRAIVSFPNF 112 (193)
T ss_pred CCCCccEEehHhHHHhHhHHHHHHHHHHHhcCeEEEEecCh
Confidence 7899999999999987754 4567788899999998754
No 120
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.30 E-value=2.4e-11 Score=116.65 Aligned_cols=104 Identities=23% Similarity=0.274 Sum_probs=84.2
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccE
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDV 288 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 288 (492)
+++|.+|||+|||+|..+..+++..+..++|+++|+++.+++.+++|+++++ ..++.+++.|+.......++||+
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g-----~~~v~~~~~D~~~~~~~~~~fD~ 143 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG-----VLNVAVTNFDGRVFGAAVPKFDA 143 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-----CCcEEEecCCHHHhhhhccCCCE
Confidence 6788999999999999999999988667899999999999999999998864 35789999998654444467999
Q ss_pred EEecCcch----------------------------hhHHHHHHHhccCCeEEEEeC
Q psy7834 289 IYVGGAVH----------------------------HYPFKLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 289 i~s~~~~~----------------------------~~~~~~~~~L~pgG~l~~~~~ 317 (492)
|+++.... .+.+++.+.|||||+|+.++-
T Consensus 144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 99754210 122367789999999998753
No 121
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.30 E-value=7.6e-12 Score=112.99 Aligned_cols=77 Identities=22% Similarity=0.261 Sum_probs=68.6
Q ss_pred hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCccc
Q psy7834 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYD 132 (492)
Q Consensus 53 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 132 (492)
.+.++.+|||+|||+|..+..+++.. +.++|+++|++++|++.|+++.+++++ ++++++++|+.+.+. .++||
T Consensus 42 ~l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l-----~~i~~~~~d~~~~~~-~~~fD 114 (187)
T PRK00107 42 YLPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGL-----KNVTVVHGRAEEFGQ-EEKFD 114 (187)
T ss_pred hcCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCC-----CCEEEEeccHhhCCC-CCCcc
Confidence 34458999999999999999999875 558999999999999999999999887 569999999988776 67999
Q ss_pred ceec
Q psy7834 133 IIHV 136 (492)
Q Consensus 133 ~i~~ 136 (492)
+|++
T Consensus 115 lV~~ 118 (187)
T PRK00107 115 VVTS 118 (187)
T ss_pred EEEE
Confidence 9987
No 122
>PRK06202 hypothetical protein; Provisional
Probab=99.30 E-value=1.3e-11 Score=116.38 Aligned_cols=95 Identities=23% Similarity=0.218 Sum_probs=72.6
Q ss_pred CCCCceEEEeccccHHHHHHHHHh---CCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCc
Q psy7834 210 KPGAKVLDIGSGSGYLTACMAHMV---GPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPY 286 (492)
Q Consensus 210 ~~~~~vLDiGcG~G~~~~~la~~~---~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 286 (492)
.++.+|||+|||+|.++..|++.. ++..+|+|+|+|++|++.|+++... .++++...+.......+++|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~--------~~~~~~~~~~~~l~~~~~~f 130 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR--------PGVTFRQAVSDELVAEGERF 130 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc--------CCCeEEEEecccccccCCCc
Confidence 456799999999999999988653 3456899999999999999887543 24566666654444456789
Q ss_pred cEEEecCcchhhHH--------HHHHHhccCCeEEE
Q psy7834 287 DVIYVGGAVHHYPF--------KLMDQLKPGGVMWF 314 (492)
Q Consensus 287 D~i~s~~~~~~~~~--------~~~~~L~pgG~l~~ 314 (492)
|+|+++.++||+++ ++.++++ |.+++
T Consensus 131 D~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i 164 (232)
T PRK06202 131 DVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLH 164 (232)
T ss_pred cEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEE
Confidence 99999999999875 4556666 45554
No 123
>PLN02476 O-methyltransferase
Probab=99.29 E-value=2.5e-11 Score=115.33 Aligned_cols=112 Identities=21% Similarity=0.310 Sum_probs=90.1
Q ss_pred HHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCC
Q psy7834 199 AQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGRE 278 (492)
Q Consensus 199 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 278 (492)
...+..+.. ..++.+|||||||+|+.++.+|...++.++|+++|.++++++.|+++++++| ..++++++.+|+.+
T Consensus 107 g~lL~~L~~-~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG----l~~~I~li~GdA~e 181 (278)
T PLN02476 107 AQLLAMLVQ-ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG----VSHKVNVKHGLAAE 181 (278)
T ss_pred HHHHHHHHH-hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEEcCHHH
Confidence 344444443 4567899999999999999999987778899999999999999999999876 23589999999865
Q ss_pred CCc------CCCCccEEEecCcchhhH---HHHHHHhccCCeEEEE
Q psy7834 279 GHA------AEGPYDVIYVGGAVHHYP---FKLMDQLKPGGVMWFT 315 (492)
Q Consensus 279 ~~~------~~~~fD~i~s~~~~~~~~---~~~~~~L~pgG~l~~~ 315 (492)
... ..++||+||..+.-...+ +.+.+.|+|||.+++.
T Consensus 182 ~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 182 SLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred HHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 332 135899999998765444 4778999999999883
No 124
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.29 E-value=2.9e-11 Score=124.43 Aligned_cols=103 Identities=22% Similarity=0.387 Sum_probs=84.1
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCC----cCCC
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGH----AAEG 284 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~ 284 (492)
+++|.+|||+|||+|..+..+++..+..++|+++|+++.+++.+++|+++.+ ..+++++++|+.... ...+
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g-----~~~v~~~~~D~~~~~~~~~~~~~ 324 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG-----LKSIKILAADSRNLLELKPQWRG 324 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC-----CCeEEEEeCChhhcccccccccc
Confidence 5678999999999999999999987667899999999999999999998864 457999999987654 2346
Q ss_pred CccEEEecCc------ch----------------------hhHHHHHHHhccCCeEEEEe
Q psy7834 285 PYDVIYVGGA------VH----------------------HYPFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 285 ~fD~i~s~~~------~~----------------------~~~~~~~~~L~pgG~l~~~~ 316 (492)
+||.|+++.. ++ .+.+++.+.|||||+|+.++
T Consensus 325 ~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 325 YFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred cCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 8999997542 11 12236789999999998864
No 125
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.29 E-value=3.3e-11 Score=117.93 Aligned_cols=114 Identities=15% Similarity=0.249 Sum_probs=81.7
Q ss_pred HHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCC
Q psy7834 200 QALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREG 279 (492)
Q Consensus 200 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 279 (492)
...+.+...++++.+|||+|||+|..+..|++......+|+++|+|++|++.|++++....+ .-++.++++|+.+.
T Consensus 52 ~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p----~~~v~~i~gD~~~~ 127 (301)
T TIGR03438 52 RHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP----QLEVHGICADFTQP 127 (301)
T ss_pred HHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC----CceEEEEEEcccch
Confidence 33343443456778999999999999999998863356899999999999999998765321 12577889998753
Q ss_pred CcCCC-----CccEEEecCcchhhH--------HHHHHHhccCCeEEEEeC
Q psy7834 280 HAAEG-----PYDVIYVGGAVHHYP--------FKLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 280 ~~~~~-----~fD~i~s~~~~~~~~--------~~~~~~L~pgG~l~~~~~ 317 (492)
..... ...+++++..+++++ .++.+.|+|||.+++.+.
T Consensus 128 ~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 128 LALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred hhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 21112 233455556665554 378899999999998653
No 126
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.28 E-value=3.4e-11 Score=123.26 Aligned_cols=105 Identities=20% Similarity=0.324 Sum_probs=84.8
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCC-cCCCCcc
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGH-AAEGPYD 287 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD 287 (492)
+.+|.+|||+|||+|..|..+++..++.++|+++|+|+.+++.+++++++.+ ..+++++++|+.... ...++||
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g-----~~~v~~~~~Da~~l~~~~~~~fD 309 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK-----LSSIEIKIADAERLTEYVQDTFD 309 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCeEEEEECchhhhhhhhhccCC
Confidence 6788999999999999999999988777899999999999999999998864 346899999987543 2356899
Q ss_pred EEEecCcc------hh----------------------hHHHHHHHhccCCeEEEEeCC
Q psy7834 288 VIYVGGAV------HH----------------------YPFKLMDQLKPGGVMWFTIGN 318 (492)
Q Consensus 288 ~i~s~~~~------~~----------------------~~~~~~~~L~pgG~l~~~~~~ 318 (492)
.|+++... .. +.+++.+.|||||+|++++-.
T Consensus 310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 99975422 11 123678999999999987643
No 127
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.27 E-value=4.5e-11 Score=123.39 Aligned_cols=103 Identities=22% Similarity=0.335 Sum_probs=83.8
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccE
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDV 288 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 288 (492)
+.+|.+|||+|||+|..+..+++..+..++|+++|+|+.|++.+++++++.+ ..+++++++|+.... +.++||+
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g-----~~~v~~~~~Da~~~~-~~~~fD~ 321 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG-----ITIIETIEGDARSFS-PEEQPDA 321 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC-----CCeEEEEeCcccccc-cCCCCCE
Confidence 5678999999999999999999887667799999999999999999998864 347999999987643 4568999
Q ss_pred EEecCcc---------------------h-------hhHHHHHHHhccCCeEEEEeC
Q psy7834 289 IYVGGAV---------------------H-------HYPFKLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 289 i~s~~~~---------------------~-------~~~~~~~~~L~pgG~l~~~~~ 317 (492)
|+++... + .+..++.+.|||||+|++++-
T Consensus 322 Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 322 ILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred EEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 9964211 0 123477899999999999763
No 128
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.27 E-value=5.9e-11 Score=109.18 Aligned_cols=80 Identities=19% Similarity=0.269 Sum_probs=68.7
Q ss_pred hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCccc
Q psy7834 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYD 132 (492)
Q Consensus 53 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 132 (492)
.+.++.+|||+|||+|.++..|++.. +..+++|||+|++|++.|+++. .++.++++|+.+ ++++++||
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~----------~~~~~~~~d~~~-~~~~~sfD 107 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYL----------PNINIIQGSLFD-PFKDNFFD 107 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhC----------CCCcEEEeeccC-CCCCCCEE
Confidence 45577899999999999999999875 3479999999999999999864 456788999888 77888999
Q ss_pred ceeccCcccccc
Q psy7834 133 IIHVGGSIEDIP 144 (492)
Q Consensus 133 ~i~~~~~~~~l~ 144 (492)
+|+++.+++++.
T Consensus 108 ~V~~~~vL~hl~ 119 (204)
T TIGR03587 108 LVLTKGVLIHIN 119 (204)
T ss_pred EEEECChhhhCC
Confidence 999999987764
No 129
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.26 E-value=6.3e-11 Score=115.58 Aligned_cols=116 Identities=22% Similarity=0.238 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhc-cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEcc
Q psy7834 197 VHAQALEILKDY-LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGD 275 (492)
Q Consensus 197 ~~~~~~~~l~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d 275 (492)
+...+++.+... ..++.+|||+|||+|.++..+++.. .+|+|+|+|+.|++.|+++....+.......+++|..+|
T Consensus 129 ~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~D 205 (315)
T PLN02585 129 TVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAND 205 (315)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcc
Confidence 345556665432 1257899999999999999999863 479999999999999999987532100012367899998
Q ss_pred CCCCCcCCCCccEEEecCcchhhHH----HHHHHhc--cCCeEEEEeCC
Q psy7834 276 GREGHAAEGPYDVIYVGGAVHHYPF----KLMDQLK--PGGVMWFTIGN 318 (492)
Q Consensus 276 ~~~~~~~~~~fD~i~s~~~~~~~~~----~~~~~L~--pgG~l~~~~~~ 318 (492)
+.+. +++||+|++..+++|+++ .+.+.++ .+|.+++.+.+
T Consensus 206 l~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~l~~g~liIs~~p 251 (315)
T PLN02585 206 LESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLASLAEKRLIISFAP 251 (315)
T ss_pred hhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHhhcCCEEEEEeCC
Confidence 7542 578999999999888875 2233221 35566666644
No 130
>PRK14968 putative methyltransferase; Provisional
Probab=99.26 E-value=1.2e-10 Score=106.18 Aligned_cols=109 Identities=24% Similarity=0.234 Sum_probs=82.2
Q ss_pred HHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCC
Q psy7834 200 QALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREG 279 (492)
Q Consensus 200 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 279 (492)
.+++.+. ..++.+|||+|||+|.++..++++ ..+|+++|+|++|++.+++++..++. ...++.++++|..+.
T Consensus 14 ~l~~~~~--~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~---~~~~~~~~~~d~~~~ 85 (188)
T PRK14968 14 LLAENAV--DKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNI---RNNGVEVIRSDLFEP 85 (188)
T ss_pred HHHHhhh--ccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCC---CCcceEEEecccccc
Confidence 3444443 367889999999999999999987 35799999999999999999876531 111288999998664
Q ss_pred CcCCCCccEEEecCcchh---------------------------hHHHHHHHhccCCeEEEEeC
Q psy7834 280 HAAEGPYDVIYVGGAVHH---------------------------YPFKLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 280 ~~~~~~fD~i~s~~~~~~---------------------------~~~~~~~~L~pgG~l~~~~~ 317 (492)
. ..++||+|+++..+.. +..++.++|||||.+++...
T Consensus 86 ~-~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 86 F-RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred c-cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 3 3448999998754321 23477899999999988653
No 131
>KOG1499|consensus
Probab=99.26 E-value=2.1e-12 Score=123.39 Aligned_cols=81 Identities=31% Similarity=0.411 Sum_probs=72.5
Q ss_pred cCCCCeEEEEecCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhhcCCCCCCceeeeehhhhHHHHHHHhhccc
Q psy7834 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFTEMAEKVMQLRVHMMSF 472 (492)
Q Consensus 393 l~~g~~vld~g~g~G~~~~~~a~~~g~~~~v~a~d~~~~~~~~a~~~l~~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~~ 472 (492)
+-.+..|||+|||||.++.+.|+. ...+|+|+|.+. +.+.|++. |..|+...+|+.+.|.+|++
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akA--GA~~V~aVe~S~-ia~~a~~i-------------v~~N~~~~ii~vi~gkvEdi 121 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKA--GARKVYAVEASS-IADFARKI-------------VKDNGLEDVITVIKGKVEDI 121 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHh--CcceEEEEechH-HHHHHHHH-------------HHhcCccceEEEeecceEEE
Confidence 556889999999999998887766 589999999997 77888888 77788889999999999999
Q ss_pred ccC-CCeEEEEecccccc
Q psy7834 473 TLE-EQSIIILSSFMGRS 489 (492)
Q Consensus 473 ~~~-~~~~~i~~~~~~~~ 489 (492)
.+| +++|+||||||||.
T Consensus 122 ~LP~eKVDiIvSEWMGy~ 139 (346)
T KOG1499|consen 122 ELPVEKVDIIVSEWMGYF 139 (346)
T ss_pred ecCccceeEEeehhhhHH
Confidence 999 99999999999995
No 132
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.25 E-value=1.9e-11 Score=111.78 Aligned_cols=112 Identities=26% Similarity=0.440 Sum_probs=88.6
Q ss_pred HHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCC
Q psy7834 199 AQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGRE 278 (492)
Q Consensus 199 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 278 (492)
...+..+.. .....+||+|||++|+.+..+|+..++.++|+.+|++++..+.|++++++++ ...+|+++.+|+.+
T Consensus 34 g~lL~~l~~-~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag----~~~~I~~~~gda~~ 108 (205)
T PF01596_consen 34 GQLLQMLVR-LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG----LDDRIEVIEGDALE 108 (205)
T ss_dssp HHHHHHHHH-HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT----GGGGEEEEES-HHH
T ss_pred HHHHHHHHH-hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC----CCCcEEEEEeccHh
Confidence 344555543 3456799999999999999999988778999999999999999999999875 23589999999864
Q ss_pred CCc------CCCCccEEEecCcchhhHH---HHHHHhccCCeEEEE
Q psy7834 279 GHA------AEGPYDVIYVGGAVHHYPF---KLMDQLKPGGVMWFT 315 (492)
Q Consensus 279 ~~~------~~~~fD~i~s~~~~~~~~~---~~~~~L~pgG~l~~~ 315 (492)
... ..++||+||..+.-....+ .+.+.|+|||.+++.
T Consensus 109 ~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 109 VLPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp HHHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred hHHHHHhccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEc
Confidence 321 1358999999987665553 677999999999983
No 133
>KOG2904|consensus
Probab=99.25 E-value=1.3e-10 Score=106.61 Aligned_cols=138 Identities=20% Similarity=0.362 Sum_probs=101.4
Q ss_pred cCCCCCCCCcccCCCCcccChHHHHHH---HHHHHh-ccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHH
Q psy7834 175 MNNPYWDIPQSLGFGSVMSSPKVHAQA---LEILKD-YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVA 250 (492)
Q Consensus 175 ~~~~y~d~~~~~~~~~~~~~~~~~~~~---~~~l~~-~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~ 250 (492)
..++|.+..+....|..|++|++..++ ++.+.+ ....+..+||+|||+|+.+..++... ++++|+++|.|+.++.
T Consensus 108 g~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L-~~~~v~AiD~S~~Ai~ 186 (328)
T KOG2904|consen 108 GSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGL-PQCTVTAIDVSKAAIK 186 (328)
T ss_pred ccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcC-CCceEEEEeccHHHHH
Confidence 346788888888889999999775543 444332 12235689999999999999999888 5899999999999999
Q ss_pred HHHHHHHhhCCCCCCCCcEEEEEc----cCCCCC-cCCCCccEEEecCcc---hhhH-----------------------
Q psy7834 251 QANKSMHTYYPNLMEGGRVQFVDG----DGREGH-AAEGPYDVIYVGGAV---HHYP----------------------- 299 (492)
Q Consensus 251 ~a~~~~~~~~~~~~~~~~v~~~~~----d~~~~~-~~~~~fD~i~s~~~~---~~~~----------------------- 299 (492)
.|.+|+.++. ..+++..++. |..+.. ...+++|+++||... ..++
T Consensus 187 La~eN~qr~~----l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~ 262 (328)
T KOG2904|consen 187 LAKENAQRLK----LSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYD 262 (328)
T ss_pred HHHHHHHHHh----hcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhH
Confidence 9999999875 3456777754 433322 345899999999643 0111
Q ss_pred ------HHHHHHhccCCeEEEEeC
Q psy7834 300 ------FKLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 300 ------~~~~~~L~pgG~l~~~~~ 317 (492)
.-..|.|+|||.+.+...
T Consensus 263 ~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 263 NLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred HHHHHHHhhHhhcccCCeEEEEec
Confidence 123589999999999775
No 134
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.25 E-value=2.4e-11 Score=109.58 Aligned_cols=76 Identities=26% Similarity=0.280 Sum_probs=67.1
Q ss_pred CCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCccccee
Q psy7834 56 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIH 135 (492)
Q Consensus 56 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~ 135 (492)
++++|||+|||+|.++..++... +.++|+++|+|++|++.++++.+++++ ++++++++|++++. ..++||+|+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~~-----~~i~~i~~d~~~~~-~~~~fD~I~ 114 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELGL-----NNVEIVNGRAEDFQ-HEEQFDVIT 114 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhCC-----CCeEEEecchhhcc-ccCCccEEE
Confidence 58899999999999999999774 558999999999999999999988887 67999999998864 357899999
Q ss_pred ccC
Q psy7834 136 VGG 138 (492)
Q Consensus 136 ~~~ 138 (492)
+..
T Consensus 115 s~~ 117 (181)
T TIGR00138 115 SRA 117 (181)
T ss_pred ehh
Confidence 865
No 135
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.25 E-value=7.7e-11 Score=120.98 Aligned_cols=109 Identities=22% Similarity=0.334 Sum_probs=84.2
Q ss_pred HHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCC
Q psy7834 200 QALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREG 279 (492)
Q Consensus 200 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 279 (492)
.+...+. +.+|.+|||+|||+|..+..++++. +.++|+++|+|+.|++.+++|+++.+ . +++++++|+...
T Consensus 235 ~~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~~g-----~-~~~~~~~D~~~~ 305 (427)
T PRK10901 235 LAATLLA--PQNGERVLDACAAPGGKTAHILELA-PQAQVVALDIDAQRLERVRENLQRLG-----L-KATVIVGDARDP 305 (427)
T ss_pred HHHHHcC--CCCCCEEEEeCCCCChHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcC-----C-CeEEEEcCcccc
Confidence 3344443 5788999999999999999999987 44799999999999999999998864 2 368999998754
Q ss_pred C--cCCCCccEEEecCcch----------------------------hhHHHHHHHhccCCeEEEEeC
Q psy7834 280 H--AAEGPYDVIYVGGAVH----------------------------HYPFKLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 280 ~--~~~~~fD~i~s~~~~~----------------------------~~~~~~~~~L~pgG~l~~~~~ 317 (492)
. ...++||.|+++.... .+...+.+.|||||++++++.
T Consensus 306 ~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 306 AQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred hhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 3 2346899999665321 122367789999999998753
No 136
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.24 E-value=2.9e-11 Score=110.94 Aligned_cols=89 Identities=20% Similarity=0.200 Sum_probs=74.9
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCC
Q psy7834 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 123 (492)
Q Consensus 44 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 123 (492)
..+++.+ ...++.+|||+|||+|.++..|++.. .+|+|+|+|++|++.|+++....++ .++++.++|+.+
T Consensus 20 ~~l~~~l--~~~~~~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~~~~-----~~v~~~~~d~~~ 89 (197)
T PRK11207 20 SEVLEAV--KVVKPGKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAAENL-----DNLHTAVVDLNN 89 (197)
T ss_pred HHHHHhc--ccCCCCcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHcCC-----CcceEEecChhh
Confidence 4555666 45577899999999999999999974 7999999999999999999888776 579999999987
Q ss_pred CCCCCCcccceeccCccccc
Q psy7834 124 GYLDEAPYDIIHVGGSIEDI 143 (492)
Q Consensus 124 ~~~~~~~~D~i~~~~~~~~l 143 (492)
.++ .++||+|+++.+++.+
T Consensus 90 ~~~-~~~fD~I~~~~~~~~~ 108 (197)
T PRK11207 90 LTF-DGEYDFILSTVVLMFL 108 (197)
T ss_pred CCc-CCCcCEEEEecchhhC
Confidence 765 3679999998776543
No 137
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.24 E-value=1.4e-11 Score=100.28 Aligned_cols=79 Identities=25% Similarity=0.515 Sum_probs=63.6
Q ss_pred EEEEcCcCcHHHHHHHHHh--CCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccceecc
Q psy7834 60 VLDIGSGNGYFTALLAWCV--GKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVG 137 (492)
Q Consensus 60 vLDiG~G~G~~~~~la~~~--~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~ 137 (492)
|||+|||+|..+..+++.. +++.+++|+|+|++|++.++++....+ .+++++++|+.+++..+++||+|++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~------~~~~~~~~D~~~l~~~~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG------PKVRFVQADARDLPFSDGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT------TTSEEEESCTTCHHHHSSSEEEEEE-
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC------CceEEEECCHhHCcccCCCeeEEEEc
Confidence 7999999999999999986 444799999999999999999987755 37899999999988878899999995
Q ss_pred -Ccccccc
Q psy7834 138 -GSIEDIP 144 (492)
Q Consensus 138 -~~~~~l~ 144 (492)
.+++++.
T Consensus 75 ~~~~~~~~ 82 (101)
T PF13649_consen 75 GLSLHHLS 82 (101)
T ss_dssp TTGGGGSS
T ss_pred CCccCCCC
Confidence 4366544
No 138
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.24 E-value=7.7e-11 Score=121.79 Aligned_cols=103 Identities=23% Similarity=0.274 Sum_probs=83.3
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCc-CCCCcc
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHA-AEGPYD 287 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD 287 (492)
+.++.+|||+|||+|..+..+++..++.++|+++|+++.+++.+++|+.+.+ ..+++++++|+..... ..++||
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g-----~~~v~~~~~D~~~~~~~~~~~fD 322 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG-----LTNIETKALDARKVHEKFAEKFD 322 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEeCCcccccchhcccCC
Confidence 5678999999999999999999987667899999999999999999998864 3469999999876431 126899
Q ss_pred EEEecCcch----------------------------hhHHHHHHHhccCCeEEEEe
Q psy7834 288 VIYVGGAVH----------------------------HYPFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 288 ~i~s~~~~~----------------------------~~~~~~~~~L~pgG~l~~~~ 316 (492)
+|+++.... .+..++.+.|||||+|+.++
T Consensus 323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 999875310 12346788999999999764
No 139
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.23 E-value=3.7e-11 Score=110.07 Aligned_cols=100 Identities=23% Similarity=0.327 Sum_probs=76.9
Q ss_pred HHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCC-C-CcC
Q psy7834 205 LKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGRE-G-HAA 282 (492)
Q Consensus 205 l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~-~~~ 282 (492)
+.+.++++.+|||+|||+|.++..+++.. ..+++|+|+|++|++.|+++ +++++++|+.+ . ...
T Consensus 7 i~~~i~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~------------~~~~~~~d~~~~l~~~~ 72 (194)
T TIGR02081 7 ILNLIPPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVAR------------GVNVIQGDLDEGLEAFP 72 (194)
T ss_pred HHHhcCCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHc------------CCeEEEEEhhhcccccC
Confidence 33346678899999999999999998764 34689999999999988642 36788888764 2 234
Q ss_pred CCCccEEEecCcchhhHH---HHHHHhccCCeEEEEeCC
Q psy7834 283 EGPYDVIYVGGAVHHYPF---KLMDQLKPGGVMWFTIGN 318 (492)
Q Consensus 283 ~~~fD~i~s~~~~~~~~~---~~~~~L~pgG~l~~~~~~ 318 (492)
+++||+|+++.+++|+++ -+.++++++|.++++++.
T Consensus 73 ~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~~ii~~p~ 111 (194)
T TIGR02081 73 DKSFDYVILSQTLQATRNPEEILDEMLRVGRHAIVSFPN 111 (194)
T ss_pred CCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCeEEEEcCC
Confidence 678999999999998864 445666788888777643
No 140
>PRK05785 hypothetical protein; Provisional
Probab=99.23 E-value=3.5e-11 Score=112.63 Aligned_cols=89 Identities=13% Similarity=0.158 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCC
Q psy7834 43 QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR 122 (492)
Q Consensus 43 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 122 (492)
++.+++.+.....++.+|||+|||||.++..+++..+ .+|+|+|+|++|++.|+++. .++++|++
T Consensus 38 r~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~--~~v~gvD~S~~Ml~~a~~~~-------------~~~~~d~~ 102 (226)
T PRK05785 38 RAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFK--YYVVALDYAENMLKMNLVAD-------------DKVVGSFE 102 (226)
T ss_pred HHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcC--CEEEEECCCHHHHHHHHhcc-------------ceEEechh
Confidence 4455555532234578999999999999999999853 79999999999999988631 35789999
Q ss_pred CCCCCCCcccceeccCcccccccc
Q psy7834 123 KGYLDEAPYDIIHVGGSIEDIPEG 146 (492)
Q Consensus 123 ~~~~~~~~~D~i~~~~~~~~l~~~ 146 (492)
.+|+++++||+|+++..++++.+.
T Consensus 103 ~lp~~d~sfD~v~~~~~l~~~~d~ 126 (226)
T PRK05785 103 ALPFRDKSFDVVMSSFALHASDNI 126 (226)
T ss_pred hCCCCCCCEEEEEecChhhccCCH
Confidence 999999999999999888765443
No 141
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.23 E-value=2e-11 Score=120.30 Aligned_cols=103 Identities=18% Similarity=0.066 Sum_probs=87.4
Q ss_pred CCcccCCccccccchhhhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhc
Q psy7834 24 YGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS 103 (492)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~ 103 (492)
+...+..++|+|...+..+...+.+++ ...++.+|||+|||+|.++..+++.. .+|+|+|++++|++.|+++++.
T Consensus 143 ~~~~~~sF~Q~n~~~~~~l~~~v~~~l--~~~~~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~ 217 (315)
T PRK03522 143 LFIRPQSFFQTNPAVAAQLYATARDWV--RELPPRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAE 217 (315)
T ss_pred EEECCCeeeecCHHHHHHHHHHHHHHH--HhcCCCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHH
Confidence 444577888999999999888888887 44467899999999999999999975 7999999999999999999999
Q ss_pred CCCCccccCceEEEecCCCCCCC-CCCcccceec
Q psy7834 104 GNPEFVKDGRIKFVLGDGRKGYL-DEAPYDIIHV 136 (492)
Q Consensus 104 ~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~i~~ 136 (492)
+++ ++++|+++|+.+... ..++||+|++
T Consensus 218 ~~l-----~~v~~~~~D~~~~~~~~~~~~D~Vv~ 246 (315)
T PRK03522 218 LGL-----TNVQFQALDSTQFATAQGEVPDLVLV 246 (315)
T ss_pred cCC-----CceEEEEcCHHHHHHhcCCCCeEEEE
Confidence 887 689999999977543 2357999976
No 142
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.23 E-value=3e-11 Score=124.70 Aligned_cols=103 Identities=23% Similarity=0.311 Sum_probs=88.8
Q ss_pred CCcccCCccccccchhhhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhc
Q psy7834 24 YGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS 103 (492)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~ 103 (492)
+...+..|+|+|...++.+...+++++ .+.++.+|||+|||+|.++..+++.. .+|+|+|+|++|++.|+++++.
T Consensus 267 f~~~~~~F~q~n~~~~e~l~~~vl~~l--~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~ 341 (443)
T PRK13168 267 LAFSPRDFIQVNAQVNQKMVARALEWL--DPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARR 341 (443)
T ss_pred EEECCCCeEEcCHHHHHHHHHHHHHHh--cCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHH
Confidence 334567888999999999999999988 67788999999999999999999986 7999999999999999999988
Q ss_pred CCCCccccCceEEEecCCCCCC----CCCCcccceec
Q psy7834 104 GNPEFVKDGRIKFVLGDGRKGY----LDEAPYDIIHV 136 (492)
Q Consensus 104 ~~~~~~~~~~v~~~~~d~~~~~----~~~~~~D~i~~ 136 (492)
+++ .+++++++|+.+.. +.+++||+|++
T Consensus 342 ~~~-----~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~ 373 (443)
T PRK13168 342 NGL-----DNVTFYHANLEEDFTDQPWALGGFDKVLL 373 (443)
T ss_pred cCC-----CceEEEEeChHHhhhhhhhhcCCCCEEEE
Confidence 887 68999999986532 33467999866
No 143
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.22 E-value=4.9e-11 Score=104.78 Aligned_cols=89 Identities=29% Similarity=0.448 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCC
Q psy7834 43 QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR 122 (492)
Q Consensus 43 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 122 (492)
+...+..| .+.++++++|||||||..++.++.. ++.++|++||-++++++..++|.+++++ +|++.+.|++.
T Consensus 23 Ral~ls~L--~~~~g~~l~DIGaGtGsi~iE~a~~-~p~~~v~AIe~~~~a~~~~~~N~~~fg~-----~n~~vv~g~Ap 94 (187)
T COG2242 23 RALTLSKL--RPRPGDRLWDIGAGTGSITIEWALA-GPSGRVIAIERDEEALELIERNAARFGV-----DNLEVVEGDAP 94 (187)
T ss_pred HHHHHHhh--CCCCCCEEEEeCCCccHHHHHHHHh-CCCceEEEEecCHHHHHHHHHHHHHhCC-----CcEEEEeccch
Confidence 77788888 8999999999999999999999954 6889999999999999999999999997 89999999997
Q ss_pred CCCCCCCcccceeccCc
Q psy7834 123 KGYLDEAPYDIIHVGGS 139 (492)
Q Consensus 123 ~~~~~~~~~D~i~~~~~ 139 (492)
+......+||.|+.+..
T Consensus 95 ~~L~~~~~~daiFIGGg 111 (187)
T COG2242 95 EALPDLPSPDAIFIGGG 111 (187)
T ss_pred HhhcCCCCCCEEEECCC
Confidence 76444347999999766
No 144
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.22 E-value=1.1e-10 Score=108.32 Aligned_cols=103 Identities=23% Similarity=0.132 Sum_probs=76.6
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCC-------CCCCCCcEEEEEccCCCCCc
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYP-------NLMEGGRVQFVDGDGREGHA 281 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-------~~~~~~~v~~~~~d~~~~~~ 281 (492)
++++.+|||+|||.|..+..||+++ .+|+|+|+|+.+++.+.+....... ......++++.++|+.+...
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G---~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQG---HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCC---CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCc
Confidence 4567899999999999999999864 3699999999999987432111000 00013578999999987643
Q ss_pred C-CCCccEEEecCcchhhHH--------HHHHHhccCCeEEE
Q psy7834 282 A-EGPYDVIYVGGAVHHYPF--------KLMDQLKPGGVMWF 314 (492)
Q Consensus 282 ~-~~~fD~i~s~~~~~~~~~--------~~~~~L~pgG~l~~ 314 (492)
. .+.||.|+-..++++++. .+.++|+|||++++
T Consensus 112 ~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 112 ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 3 357999998888877763 67899999997554
No 145
>KOG1271|consensus
Probab=99.22 E-value=9.3e-11 Score=101.01 Aligned_cols=114 Identities=24% Similarity=0.326 Sum_probs=84.0
Q ss_pred HHHHHHHHHhcc-----CC-CCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEE
Q psy7834 198 HAQALEILKDYL-----KP-GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQF 271 (492)
Q Consensus 198 ~~~~~~~l~~~~-----~~-~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~ 271 (492)
..++.+++.+.. .. ..+|||+|||.|.+...|++... .++.+|+|.|+.+++.|+..+++.+ ....|+|
T Consensus 48 e~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~----~~n~I~f 122 (227)
T KOG1271|consen 48 EERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDG----FSNEIRF 122 (227)
T ss_pred HHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcC----CCcceeE
Confidence 345555554432 23 34999999999999999999863 4569999999999999988877754 2234999
Q ss_pred EEccCCCCCcCCCCccEEEecCcchh--------------hHHHHHHHhccCCeEEEEe
Q psy7834 272 VDGDGREGHAAEGPYDVIYVGGAVHH--------------YPFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 272 ~~~d~~~~~~~~~~fD~i~s~~~~~~--------------~~~~~~~~L~pgG~l~~~~ 316 (492)
.+.|+.......++||+|+--..+.. ..+.+.+.|+|||+++|..
T Consensus 123 ~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS 181 (227)
T KOG1271|consen 123 QQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS 181 (227)
T ss_pred EEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe
Confidence 99999875555678888874433211 1247789999999999864
No 146
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.22 E-value=6.8e-11 Score=99.82 Aligned_cols=91 Identities=30% Similarity=0.377 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCC
Q psy7834 42 QQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDG 121 (492)
Q Consensus 42 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 121 (492)
+...+++.+ .+.++++|||+|||+|.++..+++.. +..+|+++|+++.+++.++++.+.+++ .+++++.+|+
T Consensus 7 ~~~~~~~~~--~~~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 78 (124)
T TIGR02469 7 VRALTLSKL--RLRPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGV-----SNIVIVEGDA 78 (124)
T ss_pred HHHHHHHHc--CCCCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCC-----CceEEEeccc
Confidence 355666666 66678899999999999999999986 347999999999999999999888776 6899999997
Q ss_pred CCCC-CCCCcccceeccCcc
Q psy7834 122 RKGY-LDEAPYDIIHVGGSI 140 (492)
Q Consensus 122 ~~~~-~~~~~~D~i~~~~~~ 140 (492)
.... ...++||.|++....
T Consensus 79 ~~~~~~~~~~~D~v~~~~~~ 98 (124)
T TIGR02469 79 PEALEDSLPEPDRVFIGGSG 98 (124)
T ss_pred cccChhhcCCCCEEEECCcc
Confidence 7532 234689999997644
No 147
>PLN02672 methionine S-methyltransferase
Probab=99.21 E-value=1.7e-10 Score=127.38 Aligned_cols=142 Identities=16% Similarity=0.083 Sum_probs=103.3
Q ss_pred CCCCCCCcccCCCCcccChHHHHHHHHHHHhccC---CCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHH
Q psy7834 177 NPYWDIPQSLGFGSVMSSPKVHAQALEILKDYLK---PGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQAN 253 (492)
Q Consensus 177 ~~y~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~ 253 (492)
..|+...+.++.+..+++|+....+-. +..... ++.+|||+|||+|.++..+++.. +.++|+|+|+|+++++.|+
T Consensus 82 ~~F~~l~~~V~p~VLIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~ 159 (1082)
T PLN02672 82 RNRKKLTMMEIPSIFIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAW 159 (1082)
T ss_pred EEecCCceeeCCCcccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHH
Confidence 356666777777888899887554433 432211 24689999999999999999987 5679999999999999999
Q ss_pred HHHHhhCCCC-----------CCCCcEEEEEccCCCCCcC-CCCccEEEecCcc--------------hh----------
Q psy7834 254 KSMHTYYPNL-----------MEGGRVQFVDGDGREGHAA-EGPYDVIYVGGAV--------------HH---------- 297 (492)
Q Consensus 254 ~~~~~~~~~~-----------~~~~~v~~~~~d~~~~~~~-~~~fD~i~s~~~~--------------~~---------- 297 (492)
+|+..++.+. ....+++|+++|+.+.... ..+||+|+||... .+
T Consensus 160 ~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~ 239 (1082)
T PLN02672 160 INLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLS 239 (1082)
T ss_pred HHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccC
Confidence 9998753210 0124799999998764432 2369999998531 00
Q ss_pred --------------------hHHHHHHHhccCCeEEEEeCCCc
Q psy7834 298 --------------------YPFKLMDQLKPGGVMWFTIGNAE 320 (492)
Q Consensus 298 --------------------~~~~~~~~L~pgG~l~~~~~~~~ 320 (492)
+..+..+.|+|||.+++.++..+
T Consensus 240 p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q 282 (1082)
T PLN02672 240 NYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRP 282 (1082)
T ss_pred ccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccH
Confidence 00145679999999999998776
No 148
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.21 E-value=1.1e-10 Score=104.41 Aligned_cols=105 Identities=19% Similarity=0.214 Sum_probs=79.7
Q ss_pred HHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCC
Q psy7834 200 QALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREG 279 (492)
Q Consensus 200 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 279 (492)
.+++.+. +.++.+|||+|||+|.++..++++. .+|+++|+++.|++.+++++.. ..+++++++|+.+.
T Consensus 4 ~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~-------~~~v~ii~~D~~~~ 71 (169)
T smart00650 4 KIVRAAN--LRPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAA-------ADNLTVIHGDALKF 71 (169)
T ss_pred HHHHhcC--CCCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhcc-------CCCEEEEECchhcC
Confidence 4445443 5677899999999999999999873 4799999999999999988754 24799999999876
Q ss_pred CcCCCCccEEEecCcchhhHHHHHHHh-----ccCCeEEEEe
Q psy7834 280 HAAEGPYDVIYVGGAVHHYPFKLMDQL-----KPGGVMWFTI 316 (492)
Q Consensus 280 ~~~~~~fD~i~s~~~~~~~~~~~~~~L-----~pgG~l~~~~ 316 (492)
..++.+||.|+++..++...+.+.+++ .++|.++++.
T Consensus 72 ~~~~~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 72 DLPKLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred CccccCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEH
Confidence 655567999999987764333333332 3677777753
No 149
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.21 E-value=8.3e-12 Score=113.54 Aligned_cols=83 Identities=20% Similarity=0.342 Sum_probs=75.1
Q ss_pred CCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccce
Q psy7834 55 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 134 (492)
Q Consensus 55 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i 134 (492)
.+|.+|||+|||-|.++..||+.. .+|+|+|+++.+|+.|+.++.+.++ ++.+.+..++++....++||+|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv------~i~y~~~~~edl~~~~~~FDvV 128 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGV------NIDYRQATVEDLASAGGQFDVV 128 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccc------cccchhhhHHHHHhcCCCccEE
Confidence 378999999999999999999996 8999999999999999999988776 5789999998887666899999
Q ss_pred eccCcccccccc
Q psy7834 135 HVGGSIEDIPEG 146 (492)
Q Consensus 135 ~~~~~~~~l~~~ 146 (492)
+|..+++++++.
T Consensus 129 ~cmEVlEHv~dp 140 (243)
T COG2227 129 TCMEVLEHVPDP 140 (243)
T ss_pred EEhhHHHccCCH
Confidence 999999888776
No 150
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.20 E-value=5.6e-11 Score=95.09 Aligned_cols=73 Identities=25% Similarity=0.454 Sum_probs=62.7
Q ss_pred EEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccceeccCcc
Q psy7834 61 LDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSI 140 (492)
Q Consensus 61 LDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~ 140 (492)
||+|||+|.++..+++. +..+|+++|++++|++.++++... .++.++++|.+++++++++||+|++..++
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~--------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~ 70 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKN--------EGVSFRQGDAEDLPFPDNSFDVVFSNSVL 70 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTT--------STEEEEESBTTSSSS-TT-EEEEEEESHG
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccc--------cCchheeehHHhCccccccccccccccce
Confidence 89999999999999998 238999999999999999998865 45679999999999999999999999999
Q ss_pred ccc
Q psy7834 141 EDI 143 (492)
Q Consensus 141 ~~l 143 (492)
+++
T Consensus 71 ~~~ 73 (95)
T PF08241_consen 71 HHL 73 (95)
T ss_dssp GGS
T ss_pred eec
Confidence 876
No 151
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.20 E-value=1.7e-10 Score=118.49 Aligned_cols=112 Identities=17% Similarity=0.223 Sum_probs=83.6
Q ss_pred HHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCC
Q psy7834 199 AQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGRE 278 (492)
Q Consensus 199 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 278 (492)
..+...+. +.+|.+|||+|||+|..+..+++..+ .++|+++|+|+.+++.+++|+++.+. ..++.+..+|...
T Consensus 228 ~~~~~~L~--~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~----~~~v~~~~~d~~~ 300 (426)
T TIGR00563 228 QWVATWLA--PQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGL----TIKAETKDGDGRG 300 (426)
T ss_pred HHHHHHhC--CCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCC----CeEEEEecccccc
Confidence 34444443 67789999999999999999999874 78999999999999999999998652 1234456777654
Q ss_pred CCc--CCCCccEEEecC------cchh----------------------hHHHHHHHhccCCeEEEEeC
Q psy7834 279 GHA--AEGPYDVIYVGG------AVHH----------------------YPFKLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 279 ~~~--~~~~fD~i~s~~------~~~~----------------------~~~~~~~~L~pgG~l~~~~~ 317 (492)
... ..++||.|+++. .+++ +.+++.+.|||||+|++++-
T Consensus 301 ~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 301 PSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred ccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 332 456899999653 2221 22367889999999999754
No 152
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.20 E-value=8.5e-11 Score=117.08 Aligned_cols=111 Identities=19% Similarity=0.250 Sum_probs=84.6
Q ss_pred CCccccccccccCCcccCCccccccchhhhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCH
Q psy7834 12 WRPYANCITNIGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIP 91 (492)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~ 91 (492)
...|.+..+.++.+..+.+|.. ..+++.+...+.++.+|||+|||+|.++..+++.. +..+|+++|+|+
T Consensus 217 ~~~F~G~~f~V~p~vLIPRpeT----------E~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~ 285 (423)
T PRK14966 217 VREFYGRRFAVNPNVLIPRPET----------EHLVEAVLARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISP 285 (423)
T ss_pred eeeecCcEEEeCCCccCCCccH----------HHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCH
Confidence 3445555566777777777766 44455443344566799999999999999999875 458999999999
Q ss_pred HHHHHHHHhhhcCCCCccccCceEEEecCCCCCCC-CCCcccceeccCc
Q psy7834 92 QLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-DEAPYDIIHVGGS 139 (492)
Q Consensus 92 ~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~i~~~~~ 139 (492)
+|++.|++|++.++ .+++++++|..+... ..++||+|+++-.
T Consensus 286 ~ALe~AreNa~~~g------~rV~fi~gDl~e~~l~~~~~FDLIVSNPP 328 (423)
T PRK14966 286 PALETARKNAADLG------ARVEFAHGSWFDTDMPSEGKWDIIVSNPP 328 (423)
T ss_pred HHHHHHHHHHHHcC------CcEEEEEcchhccccccCCCccEEEECCC
Confidence 99999999998765 379999999866433 2457999999643
No 153
>PRK04457 spermidine synthase; Provisional
Probab=99.20 E-value=1.3e-10 Score=111.16 Aligned_cols=103 Identities=24% Similarity=0.321 Sum_probs=80.9
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCc-CCCCcc
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHA-AEGPYD 287 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD 287 (492)
.+++.+|||||||+|.++..+++.. +..+|+++|+++++++.|++++...+ ..++++++.+|+.+... ..++||
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~----~~~rv~v~~~Da~~~l~~~~~~yD 138 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPE----NGERFEVIEADGAEYIAVHRHSTD 138 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCC----CCCceEEEECCHHHHHHhCCCCCC
Confidence 3456899999999999999999886 77899999999999999999875421 23689999999864322 235899
Q ss_pred EEEecCcc----------hhhHHHHHHHhccCCeEEEEe
Q psy7834 288 VIYVGGAV----------HHYPFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 288 ~i~s~~~~----------~~~~~~~~~~L~pgG~l~~~~ 316 (492)
+|+++..- ..+..++.+.|+|||++++.+
T Consensus 139 ~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 139 VILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred EEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 99976421 133358889999999999954
No 154
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.19 E-value=4.3e-11 Score=117.12 Aligned_cols=85 Identities=22% Similarity=0.286 Sum_probs=71.6
Q ss_pred CCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccce
Q psy7834 55 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 134 (492)
Q Consensus 55 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i 134 (492)
.++.+|||||||+|.++..|++.. .+|+|||++++|++.|+++....+.. .+++++++|++++++.+++||+|
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~~----~~i~~~~~dae~l~~~~~~FD~V 202 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPVT----STIEYLCTTAEKLADEGRKFDAV 202 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCcc----cceeEEecCHHHhhhccCCCCEE
Confidence 466799999999999999999864 79999999999999999886554431 57999999999988777899999
Q ss_pred eccCcccccccc
Q psy7834 135 HVGGSIEDIPEG 146 (492)
Q Consensus 135 ~~~~~~~~l~~~ 146 (492)
++..+++++.+.
T Consensus 203 i~~~vLeHv~d~ 214 (322)
T PLN02396 203 LSLEVIEHVANP 214 (322)
T ss_pred EEhhHHHhcCCH
Confidence 998877765543
No 155
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.19 E-value=1.1e-10 Score=113.13 Aligned_cols=114 Identities=18% Similarity=0.170 Sum_probs=83.4
Q ss_pred CCccccccccccCCcccCCccccccchhhhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCH
Q psy7834 12 WRPYANCITNIGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIP 91 (492)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~ 91 (492)
+..|....+.++.+..+.+|.+ ...+...+.+++ ...++.+|||+|||+|.++..+++.. ++.+|+|+|+|+
T Consensus 84 ~~~f~g~~f~v~~~vlipr~~t-----e~lv~~~l~~~~--~~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~ 155 (284)
T TIGR03533 84 EAWFAGLEFYVDERVLIPRSPI-----AELIEDGFAPWL--EPEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISP 155 (284)
T ss_pred CCeecCcEEEECCCCccCCCch-----HHHHHHHHHHHh--ccCCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCH
Confidence 3444455566666666666655 222222222222 23345799999999999999999986 557999999999
Q ss_pred HHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccceeccC
Q psy7834 92 QLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGG 138 (492)
Q Consensus 92 ~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~ 138 (492)
.+++.|+++++.+++. .+++++++|+.+. ++.++||+|+++-
T Consensus 156 ~al~~A~~n~~~~~~~----~~i~~~~~D~~~~-~~~~~fD~Iv~NP 197 (284)
T TIGR03533 156 DALAVAEINIERHGLE----DRVTLIQSDLFAA-LPGRKYDLIVSNP 197 (284)
T ss_pred HHHHHHHHHHHHcCCC----CcEEEEECchhhc-cCCCCccEEEECC
Confidence 9999999999988873 5799999998653 3456899999963
No 156
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.19 E-value=1.5e-10 Score=119.63 Aligned_cols=112 Identities=26% Similarity=0.343 Sum_probs=85.1
Q ss_pred HHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCC
Q psy7834 199 AQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGRE 278 (492)
Q Consensus 199 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 278 (492)
..+++.+. +.++.+|||+|||+|.++..+++.. .+|+|+|+|++|++.|++|+..++ ..+++++++|+.+
T Consensus 287 ~~vl~~l~--~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~-----~~~v~~~~~d~~~ 356 (443)
T PRK13168 287 ARALEWLD--PQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNG-----LDNVTFYHANLEE 356 (443)
T ss_pred HHHHHHhc--CCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEEeChHH
Confidence 33444442 4578899999999999999999875 479999999999999999998754 3579999999864
Q ss_pred CC----cCCCCccEEEecCcchhhHH--HHHHHhccCCeEEEEeCCCc
Q psy7834 279 GH----AAEGPYDVIYVGGAVHHYPF--KLMDQLKPGGVMWFTIGNAE 320 (492)
Q Consensus 279 ~~----~~~~~fD~i~s~~~~~~~~~--~~~~~L~pgG~l~~~~~~~~ 320 (492)
.. ..+++||+|+++.....+.+ +....++|++.++++|.|.+
T Consensus 357 ~l~~~~~~~~~fD~Vi~dPPr~g~~~~~~~l~~~~~~~ivyvSCnp~t 404 (443)
T PRK13168 357 DFTDQPWALGGFDKVLLDPPRAGAAEVMQALAKLGPKRIVYVSCNPAT 404 (443)
T ss_pred hhhhhhhhcCCCCEEEECcCCcChHHHHHHHHhcCCCeEEEEEeChHH
Confidence 32 22467999999865433333 22233689999999998765
No 157
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=3.8e-11 Score=121.59 Aligned_cols=104 Identities=29% Similarity=0.339 Sum_probs=92.7
Q ss_pred cCCcccCCccccccchhhhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhh
Q psy7834 23 GYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVI 102 (492)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~ 102 (492)
.+...+.+|.|+|...++.+.+.+++++ ...+++++||+.||.|.|++.||+.+ .+|+|+|+++++++.|++|++
T Consensus 262 ~~~~~~~sF~Q~N~~~~ekl~~~a~~~~--~~~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~ 336 (432)
T COG2265 262 SFQISPRSFFQVNPAVAEKLYETALEWL--ELAGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAA 336 (432)
T ss_pred EEEeCCCCceecCHHHHHHHHHHHHHHH--hhcCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHH
Confidence 3445667999999999999999999999 78888999999999999999999887 899999999999999999999
Q ss_pred cCCCCccccCceEEEecCCCCCCCCC---Ccccceec
Q psy7834 103 SGNPEFVKDGRIKFVLGDGRKGYLDE---APYDIIHV 136 (492)
Q Consensus 103 ~~~~~~~~~~~v~~~~~d~~~~~~~~---~~~D~i~~ 136 (492)
.+++ .|++|+.+++++..... ..+|.|+.
T Consensus 337 ~n~i-----~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 337 ANGI-----DNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred HcCC-----CcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 9998 68999999998876543 46788865
No 158
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.18 E-value=8.4e-11 Score=113.78 Aligned_cols=87 Identities=34% Similarity=0.515 Sum_probs=76.7
Q ss_pred hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCccc
Q psy7834 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYD 132 (492)
Q Consensus 53 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 132 (492)
.+.++++|||+|||+|..+..+++..++.++|+++|++++|++.|+++..+.++ .+++++++|++++++++++||
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-----~~v~~~~~d~~~l~~~~~~fD 148 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-----TNVEFRLGEIEALPVADNSVD 148 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-----CCEEEEEcchhhCCCCCCcee
Confidence 567899999999999999998888877767999999999999999999888776 689999999999888788999
Q ss_pred ceeccCcccccc
Q psy7834 133 IIHVGGSIEDIP 144 (492)
Q Consensus 133 ~i~~~~~~~~l~ 144 (492)
+|+++.+++..+
T Consensus 149 ~Vi~~~v~~~~~ 160 (272)
T PRK11873 149 VIISNCVINLSP 160 (272)
T ss_pred EEEEcCcccCCC
Confidence 999987765443
No 159
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.18 E-value=2.3e-10 Score=107.51 Aligned_cols=111 Identities=23% Similarity=0.352 Sum_probs=89.5
Q ss_pred HHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCC
Q psy7834 199 AQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGRE 278 (492)
Q Consensus 199 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 278 (492)
..++..+.. ..+..+||+||+++|+.++.+|+..++.++|+++|.+++..+.|++++.+.| ...+|+++.+|+.+
T Consensus 68 g~lL~~l~~-~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag----~~~~I~~~~G~a~e 142 (247)
T PLN02589 68 GQFLNMLLK-LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG----VAHKIDFREGPALP 142 (247)
T ss_pred HHHHHHHHH-HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC----CCCceEEEeccHHH
Confidence 344444443 3456799999999999999999987788999999999999999999999875 34689999999865
Q ss_pred CCcC-------CCCccEEEecCcchhhH---HHHHHHhccCCeEEE
Q psy7834 279 GHAA-------EGPYDVIYVGGAVHHYP---FKLMDQLKPGGVMWF 314 (492)
Q Consensus 279 ~~~~-------~~~fD~i~s~~~~~~~~---~~~~~~L~pgG~l~~ 314 (492)
.... .++||+||..+.-...+ +.+.+.|+|||.+++
T Consensus 143 ~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 143 VLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred HHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEE
Confidence 4321 26899999998765444 367899999999988
No 160
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.18 E-value=2.1e-10 Score=108.13 Aligned_cols=91 Identities=26% Similarity=0.340 Sum_probs=70.4
Q ss_pred HHHHHHHHh-ccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCC
Q psy7834 199 AQALEILKD-YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGR 277 (492)
Q Consensus 199 ~~~~~~l~~-~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 277 (492)
+.+++.+.. ...++.+|||+|||+|.++..+++.. .+|+|+|+|+.|++.|+++....+ ...++++..+|+.
T Consensus 50 ~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~----~~~~i~~~~~d~~ 122 (230)
T PRK07580 50 DTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAG----LAGNITFEVGDLE 122 (230)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcC----CccCcEEEEcCch
Confidence 445555542 13567899999999999999998764 369999999999999999987643 1247899999953
Q ss_pred CCCcCCCCccEEEecCcchhhH
Q psy7834 278 EGHAAEGPYDVIYVGGAVHHYP 299 (492)
Q Consensus 278 ~~~~~~~~fD~i~s~~~~~~~~ 299 (492)
..+++||+|++..+++|++
T Consensus 123 ---~~~~~fD~v~~~~~l~~~~ 141 (230)
T PRK07580 123 ---SLLGRFDTVVCLDVLIHYP 141 (230)
T ss_pred ---hccCCcCEEEEcchhhcCC
Confidence 2357899999999887765
No 161
>PRK00811 spermidine synthase; Provisional
Probab=99.17 E-value=1.9e-10 Score=111.33 Aligned_cols=107 Identities=26% Similarity=0.258 Sum_probs=81.7
Q ss_pred CCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCc-CCCCccE
Q psy7834 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHA-AEGPYDV 288 (492)
Q Consensus 210 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~ 288 (492)
+.+.+||+||||+|.++..+++.. ...+|+++|+++++++.|++.+...+......++++++.+|+..... ..++||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 456899999999999999998763 45689999999999999999886532211135689999999865322 3568999
Q ss_pred EEecCcchh----------hHHHHHHHhccCCeEEEEeC
Q psy7834 289 IYVGGAVHH----------YPFKLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 289 i~s~~~~~~----------~~~~~~~~L~pgG~l~~~~~ 317 (492)
|+++..-+. +-..+.+.|+|||++++..+
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 999754322 22477899999999998643
No 162
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.16 E-value=1.6e-10 Score=109.97 Aligned_cols=86 Identities=16% Similarity=0.276 Sum_probs=72.2
Q ss_pred hcCCCCeEEEEcCcCcHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcc
Q psy7834 53 ELTEGKKVLDIGSGNGYFTALLAWCV-GKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPY 131 (492)
Q Consensus 53 ~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 131 (492)
.+.++.+|||+|||+|..+..+++.. .+..+|+|+|+|++|++.|+++....+.. .+++++++|+.+.+++ .+
T Consensus 53 ~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~----~~v~~~~~d~~~~~~~--~~ 126 (247)
T PRK15451 53 FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP----TPVDVIEGDIRDIAIE--NA 126 (247)
T ss_pred hCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC----CCeEEEeCChhhCCCC--CC
Confidence 35678899999999999999998854 35689999999999999999999877653 5899999999887654 58
Q ss_pred cceeccCcccccc
Q psy7834 132 DIIHVGGSIEDIP 144 (492)
Q Consensus 132 D~i~~~~~~~~l~ 144 (492)
|+|+++.+++.+.
T Consensus 127 D~vv~~~~l~~l~ 139 (247)
T PRK15451 127 SMVVLNFTLQFLE 139 (247)
T ss_pred CEEehhhHHHhCC
Confidence 9999987776554
No 163
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.16 E-value=1.4e-10 Score=108.54 Aligned_cols=94 Identities=24% Similarity=0.298 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEec
Q psy7834 40 KFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLG 119 (492)
Q Consensus 40 ~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~ 119 (492)
..+...+++++.....++.+|||+|||+|.++..+++.. .+|+|+|+|++|++.|+++....+.. .++++.++
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~~~~----~~i~~~~~ 111 (219)
T TIGR02021 39 AAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGRDVA----GNVEFEVN 111 (219)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCC----CceEEEEC
Confidence 344566777773215678999999999999999999874 79999999999999999998766542 47999999
Q ss_pred CCCCCCCCCCcccceeccCccccc
Q psy7834 120 DGRKGYLDEAPYDIIHVGGSIEDI 143 (492)
Q Consensus 120 d~~~~~~~~~~~D~i~~~~~~~~l 143 (492)
|+...+ ++||+|++...+.++
T Consensus 112 d~~~~~---~~fD~ii~~~~l~~~ 132 (219)
T TIGR02021 112 DLLSLC---GEFDIVVCMDVLIHY 132 (219)
T ss_pred ChhhCC---CCcCEEEEhhHHHhC
Confidence 988765 789999987665443
No 164
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.16 E-value=8.3e-11 Score=112.61 Aligned_cols=82 Identities=23% Similarity=0.253 Sum_probs=70.4
Q ss_pred CCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCC-CCCCcccc
Q psy7834 55 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-LDEAPYDI 133 (492)
Q Consensus 55 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~ 133 (492)
.++.+|||+|||+|.++..+++.. .+|+++|+|++|++.|+++..+.++. .+++++++|+.+++ ..+++||+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~----~~v~~~~~d~~~l~~~~~~~fD~ 115 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVS----DNMQFIHCAAQDIAQHLETPVDL 115 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCc----cceEEEEcCHHHHhhhcCCCCCE
Confidence 456799999999999999999985 79999999999999999999887763 68999999998764 45679999
Q ss_pred eeccCccccc
Q psy7834 134 IHVGGSIEDI 143 (492)
Q Consensus 134 i~~~~~~~~l 143 (492)
|+++.+++.+
T Consensus 116 V~~~~vl~~~ 125 (255)
T PRK11036 116 ILFHAVLEWV 125 (255)
T ss_pred EEehhHHHhh
Confidence 9997766544
No 165
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.16 E-value=1.7e-10 Score=105.15 Aligned_cols=92 Identities=28% Similarity=0.399 Sum_probs=71.0
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCC--------
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGH-------- 280 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-------- 280 (492)
++++.+|||+|||+|.++..++++..+.++|+++|+|+.+ . ..+++++++|+.+..
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~-------~~~i~~~~~d~~~~~~~~~l~~~ 93 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------P-------IENVDFIRGDFTDEEVLNKIRER 93 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------c-------CCCceEEEeeCCChhHHHHHHHH
Confidence 5789999999999999999999887667789999999865 1 135788888876532
Q ss_pred cCCCCccEEEecCcc--------hh---------hHHHHHHHhccCCeEEEEe
Q psy7834 281 AAEGPYDVIYVGGAV--------HH---------YPFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 281 ~~~~~fD~i~s~~~~--------~~---------~~~~~~~~L~pgG~l~~~~ 316 (492)
.+.++||+|+++... ++ +..++.+.|+|||++++..
T Consensus 94 ~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 94 VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred hCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 235679999986431 11 2247889999999999965
No 166
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.15 E-value=9.8e-11 Score=112.13 Aligned_cols=86 Identities=21% Similarity=0.326 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCC
Q psy7834 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 123 (492)
Q Consensus 44 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 123 (492)
..+++.+ ...++.+|||+|||+|.++..+++.. +..+|+|+|+|+.|++.|++ .+++++++|+++
T Consensus 19 ~~ll~~l--~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~------------~~~~~~~~d~~~ 83 (255)
T PRK14103 19 YDLLARV--GAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARE------------RGVDARTGDVRD 83 (255)
T ss_pred HHHHHhC--CCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHh------------cCCcEEEcChhh
Confidence 3455555 56678999999999999999999986 55799999999999999875 246799999987
Q ss_pred CCCCCCcccceeccCccccccc
Q psy7834 124 GYLDEAPYDIIHVGGSIEDIPE 145 (492)
Q Consensus 124 ~~~~~~~~D~i~~~~~~~~l~~ 145 (492)
++ ++++||+|+++.+++.+++
T Consensus 84 ~~-~~~~fD~v~~~~~l~~~~d 104 (255)
T PRK14103 84 WK-PKPDTDVVVSNAALQWVPE 104 (255)
T ss_pred CC-CCCCceEEEEehhhhhCCC
Confidence 64 4679999999888765543
No 167
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.15 E-value=2e-10 Score=102.80 Aligned_cols=86 Identities=24% Similarity=0.374 Sum_probs=70.3
Q ss_pred HHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCC
Q psy7834 45 MVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKG 124 (492)
Q Consensus 45 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 124 (492)
.+++.+ ...++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.++++++.+++ .+++++++|..+.
T Consensus 22 lL~~~l--~~~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~-----~~v~~~~~d~~~~ 93 (170)
T PF05175_consen 22 LLLDNL--PKHKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGL-----ENVEVVQSDLFEA 93 (170)
T ss_dssp HHHHHH--HHHTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTC-----TTEEEEESSTTTT
T ss_pred HHHHHH--hhccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCc-----ccccccccccccc
Confidence 455555 23367899999999999999999986 556899999999999999999999988 4599999998765
Q ss_pred CCCCCcccceeccCc
Q psy7834 125 YLDEAPYDIIHVGGS 139 (492)
Q Consensus 125 ~~~~~~~D~i~~~~~ 139 (492)
. +.++||+|+++-.
T Consensus 94 ~-~~~~fD~Iv~NPP 107 (170)
T PF05175_consen 94 L-PDGKFDLIVSNPP 107 (170)
T ss_dssp C-CTTCEEEEEE---
T ss_pred c-cccceeEEEEccc
Confidence 3 3689999999644
No 168
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.15 E-value=1.1e-10 Score=111.65 Aligned_cols=83 Identities=19% Similarity=0.253 Sum_probs=67.8
Q ss_pred HHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCC
Q psy7834 45 MVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKG 124 (492)
Q Consensus 45 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 124 (492)
.+++.+ ...++.+|||+|||+|.++..+++.. .+|+++|+|++|++.|+++. ....++++|++.+
T Consensus 33 ~l~~~l--~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~----------~~~~~~~~d~~~~ 97 (251)
T PRK10258 33 ALLAML--PQRKFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKD----------AADHYLAGDIESL 97 (251)
T ss_pred HHHHhc--CccCCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhC----------CCCCEEEcCcccC
Confidence 344444 33456899999999999999998864 79999999999999998864 2357899999998
Q ss_pred CCCCCcccceeccCcccc
Q psy7834 125 YLDEAPYDIIHVGGSIED 142 (492)
Q Consensus 125 ~~~~~~~D~i~~~~~~~~ 142 (492)
++++++||+|+++.+++.
T Consensus 98 ~~~~~~fD~V~s~~~l~~ 115 (251)
T PRK10258 98 PLATATFDLAWSNLAVQW 115 (251)
T ss_pred cCCCCcEEEEEECchhhh
Confidence 888889999999877653
No 169
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.15 E-value=5.5e-11 Score=105.40 Aligned_cols=82 Identities=26% Similarity=0.421 Sum_probs=72.7
Q ss_pred hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCccc
Q psy7834 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYD 132 (492)
Q Consensus 53 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 132 (492)
.+....+|.|+|||+|+.|..|++.. |.+.|+|+|-|++|++.|+.+. .+++|..+|+.... +..++|
T Consensus 27 p~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rl----------p~~~f~~aDl~~w~-p~~~~d 94 (257)
T COG4106 27 PLERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRL----------PDATFEEADLRTWK-PEQPTD 94 (257)
T ss_pred CccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhC----------CCCceecccHhhcC-CCCccc
Confidence 56677899999999999999999998 6799999999999999998876 78999999987753 568899
Q ss_pred ceeccCcccccccc
Q psy7834 133 IIHVGGSIEDIPEG 146 (492)
Q Consensus 133 ~i~~~~~~~~l~~~ 146 (492)
+++++.+++-+++.
T Consensus 95 llfaNAvlqWlpdH 108 (257)
T COG4106 95 LLFANAVLQWLPDH 108 (257)
T ss_pred hhhhhhhhhhcccc
Confidence 99999999877665
No 170
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.15 E-value=2.1e-10 Score=104.51 Aligned_cols=87 Identities=29% Similarity=0.412 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCC
Q psy7834 43 QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR 122 (492)
Q Consensus 43 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 122 (492)
+..+++.+ .+.++.+|||+|||+|.++..+++.. ++.+|+++|+++.+++.|+++.+++++ .+++++++|+.
T Consensus 20 r~~~~~~l--~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~-----~~i~~~~~d~~ 91 (187)
T PRK08287 20 RALALSKL--ELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGC-----GNIDIIPGEAP 91 (187)
T ss_pred HHHHHHhc--CCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCC-----CCeEEEecCch
Confidence 45566666 67788999999999999999999985 558999999999999999999988776 67999999975
Q ss_pred CCCCCCCcccceeccCc
Q psy7834 123 KGYLDEAPYDIIHVGGS 139 (492)
Q Consensus 123 ~~~~~~~~~D~i~~~~~ 139 (492)
. +. .++||+|++...
T Consensus 92 ~-~~-~~~~D~v~~~~~ 106 (187)
T PRK08287 92 I-EL-PGKADAIFIGGS 106 (187)
T ss_pred h-hc-CcCCCEEEECCC
Confidence 3 23 368999998654
No 171
>KOG4300|consensus
Probab=99.15 E-value=6.1e-11 Score=104.26 Aligned_cols=96 Identities=26% Similarity=0.369 Sum_probs=76.4
Q ss_pred CceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEE-EEEccCCCCC-cCCCCccEEE
Q psy7834 213 AKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQ-FVDGDGREGH-AAEGPYDVIY 290 (492)
Q Consensus 213 ~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~-~~~~d~~~~~-~~~~~fD~i~ 290 (492)
..||+||||||..-...- +.|..+|+++|.++.|-+.|.+.++++ ...++. |+.++.++.+ ..++++|.|+
T Consensus 78 ~~vLEvgcGtG~Nfkfy~--~~p~~svt~lDpn~~mee~~~ks~~E~-----k~~~~~~fvva~ge~l~~l~d~s~DtVV 150 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYP--WKPINSVTCLDPNEKMEEIADKSAAEK-----KPLQVERFVVADGENLPQLADGSYDTVV 150 (252)
T ss_pred cceEEecccCCCCccccc--CCCCceEEEeCCcHHHHHHHHHHHhhc-----cCcceEEEEeechhcCcccccCCeeeEE
Confidence 367999999998755432 226778999999999999999998875 234676 9999998876 4789999999
Q ss_pred ecCcch------hhHHHHHHHhccCCeEEEE
Q psy7834 291 VGGAVH------HYPFKLMDQLKPGGVMWFT 315 (492)
Q Consensus 291 s~~~~~------~~~~~~~~~L~pgG~l~~~ 315 (492)
+..++- ...+++.++|||||++++-
T Consensus 151 ~TlvLCSve~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 151 CTLVLCSVEDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred EEEEEeccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 877652 2335899999999999883
No 172
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.15 E-value=7.9e-10 Score=100.76 Aligned_cols=113 Identities=17% Similarity=0.155 Sum_probs=82.1
Q ss_pred HHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCC
Q psy7834 198 HAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGR 277 (492)
Q Consensus 198 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 277 (492)
.+.+++.+.. ..++.+|||+|||+|.++..++.+. ..+|+++|+++.+++.+++|++.++ ..+++++++|+.
T Consensus 41 ~e~l~~~l~~-~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~-----~~~v~~~~~D~~ 112 (199)
T PRK10909 41 RETLFNWLAP-VIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLK-----AGNARVVNTNAL 112 (199)
T ss_pred HHHHHHHHhh-hcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhC-----CCcEEEEEchHH
Confidence 3445555532 2457899999999999998765554 3589999999999999999998864 347999999986
Q ss_pred CCCc-CCCCccEEEecCcc-hhhHHHHHH------HhccCCeEEEEeCC
Q psy7834 278 EGHA-AEGPYDVIYVGGAV-HHYPFKLMD------QLKPGGVMWFTIGN 318 (492)
Q Consensus 278 ~~~~-~~~~fD~i~s~~~~-~~~~~~~~~------~L~pgG~l~~~~~~ 318 (492)
+... ..++||+|+++..+ ..+..++.+ +|+|+|.+++++..
T Consensus 113 ~~l~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 113 SFLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred HHHhhcCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 5332 23579999999874 333333332 25789999987654
No 173
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.14 E-value=1.6e-10 Score=110.88 Aligned_cols=89 Identities=30% Similarity=0.380 Sum_probs=74.9
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCC
Q psy7834 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 123 (492)
Q Consensus 44 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 123 (492)
..+++.+ .+.++.+|||||||+|..+..+++..+ .+|+|+|+|++|++.|+++.... .++.++++|+..
T Consensus 42 ~~~l~~l--~l~~~~~VLDiGcG~G~~a~~la~~~~--~~v~giD~s~~~~~~a~~~~~~~-------~~i~~~~~D~~~ 110 (263)
T PTZ00098 42 TKILSDI--ELNENSKVLDIGSGLGGGCKYINEKYG--AHVHGVDICEKMVNIAKLRNSDK-------NKIEFEANDILK 110 (263)
T ss_pred HHHHHhC--CCCCCCEEEEEcCCCChhhHHHHhhcC--CEEEEEECCHHHHHHHHHHcCcC-------CceEEEECCccc
Confidence 5566666 778899999999999999999988653 79999999999999999886541 579999999998
Q ss_pred CCCCCCcccceeccCccccc
Q psy7834 124 GYLDEAPYDIIHVGGSIEDI 143 (492)
Q Consensus 124 ~~~~~~~~D~i~~~~~~~~l 143 (492)
.++++++||+|++..++.++
T Consensus 111 ~~~~~~~FD~V~s~~~l~h~ 130 (263)
T PTZ00098 111 KDFPENTFDMIYSRDAILHL 130 (263)
T ss_pred CCCCCCCeEEEEEhhhHHhC
Confidence 88888999999996655443
No 174
>PRK06202 hypothetical protein; Provisional
Probab=99.14 E-value=2e-10 Score=108.46 Aligned_cols=84 Identities=20% Similarity=0.249 Sum_probs=68.3
Q ss_pred CCCCeEEEEcCcCcHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcc
Q psy7834 55 TEGKKVLDIGSGNGYFTALLAWCV---GKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPY 131 (492)
Q Consensus 55 ~~~~~vLDiG~G~G~~~~~la~~~---~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 131 (492)
.++.+|||+|||+|.++..|++.. ++..+|+|+|+|++|++.|+++... .++++.++++..++..+++|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~--------~~~~~~~~~~~~l~~~~~~f 130 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR--------PGVTFRQAVSDELVAEGERF 130 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc--------CCCeEEEEecccccccCCCc
Confidence 466799999999999999998753 3446999999999999999987644 35677777776666667899
Q ss_pred cceeccCcccccccc
Q psy7834 132 DIIHVGGSIEDIPEG 146 (492)
Q Consensus 132 D~i~~~~~~~~l~~~ 146 (492)
|+|+++.+++++.+.
T Consensus 131 D~V~~~~~lhh~~d~ 145 (232)
T PRK06202 131 DVVTSNHFLHHLDDA 145 (232)
T ss_pred cEEEECCeeecCChH
Confidence 999999999887654
No 175
>PHA03412 putative methyltransferase; Provisional
Probab=99.14 E-value=2.5e-10 Score=104.94 Aligned_cols=171 Identities=16% Similarity=0.148 Sum_probs=100.8
Q ss_pred CCCeEEEEcCcCcHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccc
Q psy7834 56 EGKKVLDIGSGNGYFTALLAWCVG--KTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDI 133 (492)
Q Consensus 56 ~~~~vLDiG~G~G~~~~~la~~~~--~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 133 (492)
.+.+|||+|||+|.++..+++... +..+|+++|+++.+++.|+++. .++.++++|+....+ +++||+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~----------~~~~~~~~D~~~~~~-~~~FDl 117 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV----------PEATWINADALTTEF-DTLFDM 117 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc----------cCCEEEEcchhcccc-cCCccE
Confidence 467999999999999999998641 2469999999999999999875 467899999876554 568999
Q ss_pred eeccCcccccccchhcc---ccc-ChhHH-HHHHhcccccc-ccccccCCCCCCCCcccCCCCcccChHHHHHHHHHHHh
Q psy7834 134 IHVGGSIEDIPEGVRFG---HIA-SPKVE-SVMRSIDRRRF-IERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKD 207 (492)
Q Consensus 134 i~~~~~~~~l~~~L~~~---~l~-~~~~~-~a~~~v~r~~f-~~~~~~~~~y~d~~~~~~~~~~~~~~~~~~~~~~~l~~ 207 (492)
|++|-....+......+ +.. ...+. .+....+...+ +|.......|.-.+...-.+.+ . .......
T Consensus 118 IIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~~~~y~~~~~~~~~~~~-~----~~~~~~~--- 189 (241)
T PHA03412 118 AISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSANFRYSGTHYFRQDEST-T----SSKCKKF--- 189 (241)
T ss_pred EEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcccccCcccCccceeeccCc-c----cHHHHHH---
Confidence 99997776543222111 111 12122 22222222222 3333333334333322111111 0 1122222
Q ss_pred ccCCCCceEEEeccc--cHHHHHHHHHhCCCCeEEEEeCCHH
Q psy7834 208 YLKPGAKVLDIGSGS--GYLTACMAHMVGPTGKVYAVEHIED 247 (492)
Q Consensus 208 ~~~~~~~vLDiGcG~--G~~~~~la~~~~~~~~v~giD~s~~ 247 (492)
......+++-|||- +++--.... +.|-..|+.+|..+.
T Consensus 190 -~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 229 (241)
T PHA03412 190 -LDETGLEMNPGCGIDTGYYLEDWKG-VKPLCEVVCMEFNEP 229 (241)
T ss_pred -HHhcCeeecCCCCccceeehhhccC-CCccceEEEEeecCc
Confidence 34456888989984 444433332 246667888886543
No 176
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.14 E-value=2e-10 Score=105.50 Aligned_cols=90 Identities=28% Similarity=0.446 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCC
Q psy7834 43 QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR 122 (492)
Q Consensus 43 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 122 (492)
+...+..+ .+.++.+|||+|||+|.++..+++..++.++|+++|++++|++.|+++++++++. ++++++++|..
T Consensus 29 r~~~l~~l--~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~----~~v~~~~~d~~ 102 (198)
T PRK00377 29 RALALSKL--RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL----NNIVLIKGEAP 102 (198)
T ss_pred HHHHHHHc--CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC----CCeEEEEechh
Confidence 44455555 7889999999999999999999987656679999999999999999999888752 68999999987
Q ss_pred CCCC-CCCcccceeccC
Q psy7834 123 KGYL-DEAPYDIIHVGG 138 (492)
Q Consensus 123 ~~~~-~~~~~D~i~~~~ 138 (492)
+... ..++||+|+++.
T Consensus 103 ~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 103 EILFTINEKFDRIFIGG 119 (198)
T ss_pred hhHhhcCCCCCEEEECC
Confidence 6432 246899999854
No 177
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.14 E-value=2.7e-10 Score=112.30 Aligned_cols=102 Identities=17% Similarity=0.118 Sum_probs=80.9
Q ss_pred CCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCc-CCCCccEE
Q psy7834 211 PGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHA-AEGPYDVI 289 (492)
Q Consensus 211 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~i 289 (492)
++.+|||+|||+|.++..+++.. .+|+|+|+|+.|++.|+++++.++ ..+++|+++|+.+... ..++||+|
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~-----l~~v~~~~~D~~~~~~~~~~~~D~V 244 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELG-----LTNVQFQALDSTQFATAQGEVPDLV 244 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEEcCHHHHHHhcCCCCeEE
Confidence 56899999999999999999853 479999999999999999998864 3579999999865432 23579999
Q ss_pred EecCcchhhHH---HHHHHhccCCeEEEEeCCCc
Q psy7834 290 YVGGAVHHYPF---KLMDQLKPGGVMWFTIGNAE 320 (492)
Q Consensus 290 ~s~~~~~~~~~---~~~~~L~pgG~l~~~~~~~~ 320 (492)
+++..-..+.. ++...++|++.++++|.+.+
T Consensus 245 v~dPPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t 278 (315)
T PRK03522 245 LVNPPRRGIGKELCDYLSQMAPRFILYSSCNAQT 278 (315)
T ss_pred EECCCCCCccHHHHHHHHHcCCCeEEEEECCccc
Confidence 99965443333 33444678999999998765
No 178
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.13 E-value=1.9e-10 Score=108.63 Aligned_cols=88 Identities=27% Similarity=0.376 Sum_probs=77.0
Q ss_pred HHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCC
Q psy7834 45 MVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKG 124 (492)
Q Consensus 45 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 124 (492)
.+.+.| .+++|++|||||||-|.+++.+|+..+ .+|+|+++|+++.+.+++++.+.|++ .+++++..|..++
T Consensus 63 ~~~~kl--~L~~G~~lLDiGCGWG~l~~~aA~~y~--v~V~GvTlS~~Q~~~~~~r~~~~gl~----~~v~v~l~d~rd~ 134 (283)
T COG2230 63 LILEKL--GLKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEEQLAYAEKRIAARGLE----DNVEVRLQDYRDF 134 (283)
T ss_pred HHHHhc--CCCCCCEEEEeCCChhHHHHHHHHHcC--CEEEEeeCCHHHHHHHHHHHHHcCCC----cccEEEecccccc
Confidence 345555 899999999999999999999999975 89999999999999999999999985 6899999998776
Q ss_pred CCCCCcccceeccCccccc
Q psy7834 125 YLDEAPYDIIHVGGSIEDI 143 (492)
Q Consensus 125 ~~~~~~~D~i~~~~~~~~l 143 (492)
. +.||.|++...++++
T Consensus 135 ~---e~fDrIvSvgmfEhv 150 (283)
T COG2230 135 E---EPFDRIVSVGMFEHV 150 (283)
T ss_pred c---cccceeeehhhHHHh
Confidence 4 449999998777654
No 179
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.13 E-value=4.7e-10 Score=105.31 Aligned_cols=112 Identities=20% Similarity=0.299 Sum_probs=85.1
Q ss_pred HHHHHHHHHhc--cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEcc
Q psy7834 198 HAQALEILKDY--LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGD 275 (492)
Q Consensus 198 ~~~~~~~l~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d 275 (492)
.+.+.+.+... ...+.+|||+|||+|.++..+++.. .+++++|+|+.+++.+++++...+ ..++++..+|
T Consensus 30 ~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~-----~~~~~~~~~d 101 (224)
T TIGR01983 30 LDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDP-----LLKIEYRCTS 101 (224)
T ss_pred HHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEeCC
Confidence 34555555421 1247899999999999999888753 369999999999999999887642 2258888888
Q ss_pred CCCCCcC-CCCccEEEecCcchhhH------HHHHHHhccCCeEEEEeC
Q psy7834 276 GREGHAA-EGPYDVIYVGGAVHHYP------FKLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 276 ~~~~~~~-~~~fD~i~s~~~~~~~~------~~~~~~L~pgG~l~~~~~ 317 (492)
+.+.+.. .++||+|+++..++++. .++.+.|+|||.+++...
T Consensus 102 ~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 102 VEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred HHHhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 7654433 37899999998877654 378899999999998653
No 180
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.13 E-value=1.8e-10 Score=110.36 Aligned_cols=95 Identities=26% Similarity=0.301 Sum_probs=71.0
Q ss_pred hhhhHHH---HHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCce
Q psy7834 38 FSKFQQA---MVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRI 114 (492)
Q Consensus 38 ~~~~~~~---~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v 114 (492)
..+.+.+ .+++.+ .+++|++|||||||-|.++..+|+..| ++|+||.+|++..+.|++++++.|++ +++
T Consensus 43 Le~AQ~~k~~~~~~~~--~l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS~~Q~~~a~~~~~~~gl~----~~v 114 (273)
T PF02353_consen 43 LEEAQERKLDLLCEKL--GLKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITLSEEQAEYARERIREAGLE----DRV 114 (273)
T ss_dssp HHHHHHHHHHHHHTTT--T--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSS----STE
T ss_pred HHHHHHHHHHHHHHHh--CCCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEECCHHHHHHHHHHHHhcCCC----Cce
Confidence 4444444 344444 789999999999999999999999975 89999999999999999999999985 789
Q ss_pred EEEecCCCCCCCCCCcccceeccCccccc
Q psy7834 115 KFVLGDGRKGYLDEAPYDIIHVGGSIEDI 143 (492)
Q Consensus 115 ~~~~~d~~~~~~~~~~~D~i~~~~~~~~l 143 (492)
++.++|..+++. +||.|++..+++++
T Consensus 115 ~v~~~D~~~~~~---~fD~IvSi~~~Ehv 140 (273)
T PF02353_consen 115 EVRLQDYRDLPG---KFDRIVSIEMFEHV 140 (273)
T ss_dssp EEEES-GGG------S-SEEEEESEGGGT
T ss_pred EEEEeeccccCC---CCCEEEEEechhhc
Confidence 999999876543 99999998887765
No 181
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.13 E-value=3.6e-10 Score=106.76 Aligned_cols=100 Identities=24% Similarity=0.374 Sum_probs=80.1
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCC-cCCCCcc
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGH-AAEGPYD 287 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD 287 (492)
..++.+|||+|||+|.++..+++.. .+++++|+++.+++.|++++...+ .+++++..|..... ...++||
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~~~~~fD 116 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESG------LKIDYRQTTAEELAAEHPGQFD 116 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcC------CceEEEecCHHHhhhhcCCCcc
Confidence 3467899999999999999988763 479999999999999999887642 25788888876543 2347899
Q ss_pred EEEecCcchhhH------HHHHHHhccCCeEEEEeC
Q psy7834 288 VIYVGGAVHHYP------FKLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 288 ~i~s~~~~~~~~------~~~~~~L~pgG~l~~~~~ 317 (492)
+|++...+++++ .++.+.|+|||++++...
T Consensus 117 ~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 117 VVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred EEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 999988777654 377899999999998754
No 182
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.13 E-value=2.1e-10 Score=105.11 Aligned_cols=88 Identities=19% Similarity=0.173 Sum_probs=71.5
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCC
Q psy7834 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 123 (492)
Q Consensus 44 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 123 (492)
+.+++.+ ...++.+|||+|||+|.++..+++.. .+|+|+|+|+.|++.++++..+.++ ++++.++|+..
T Consensus 20 ~~l~~~~--~~~~~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~------~v~~~~~d~~~ 88 (195)
T TIGR00477 20 SAVREAV--KTVAPCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENL------PLRTDAYDINA 88 (195)
T ss_pred HHHHHHh--ccCCCCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCC------CceeEeccchh
Confidence 4555555 55567899999999999999999874 7999999999999999998877765 37888888866
Q ss_pred CCCCCCcccceeccCccccc
Q psy7834 124 GYLDEAPYDIIHVGGSIEDI 143 (492)
Q Consensus 124 ~~~~~~~~D~i~~~~~~~~l 143 (492)
.+++ ++||+|+++..++.+
T Consensus 89 ~~~~-~~fD~I~~~~~~~~~ 107 (195)
T TIGR00477 89 AALN-EDYDFIFSTVVFMFL 107 (195)
T ss_pred cccc-CCCCEEEEecccccC
Confidence 5543 689999998777644
No 183
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.13 E-value=2.7e-10 Score=111.35 Aligned_cols=112 Identities=16% Similarity=0.165 Sum_probs=80.8
Q ss_pred CccccccccccCCcccCCccccccchhhhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHH
Q psy7834 13 RPYANCITNIGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQ 92 (492)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~ 92 (492)
..|....+-++.+..+.+|.+ +..+...+.+++ ...+..+|||+|||+|.++..+++.. +..+|+++|+|+.
T Consensus 97 ~~F~g~~f~v~~~vlipr~~t-----e~lv~~~l~~~~--~~~~~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~ 168 (307)
T PRK11805 97 AWFCGLEFYVDERVLVPRSPI-----AELIEDGFAPWL--EDPPVTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPD 168 (307)
T ss_pred ceEcCcEEEECCCCcCCCCch-----HHHHHHHHHHHh--ccCCCCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHH
Confidence 344445556666666666655 222222222222 11123689999999999999999986 5589999999999
Q ss_pred HHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccceecc
Q psy7834 93 LVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVG 137 (492)
Q Consensus 93 ~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~ 137 (492)
+++.|+++++.+++. ++++++++|+.+. ++.++||+|+++
T Consensus 169 al~~A~~n~~~~~l~----~~i~~~~~D~~~~-l~~~~fDlIvsN 208 (307)
T PRK11805 169 ALAVAEINIERHGLE----DRVTLIESDLFAA-LPGRRYDLIVSN 208 (307)
T ss_pred HHHHHHHHHHHhCCC----CcEEEEECchhhh-CCCCCccEEEEC
Confidence 999999999988873 5799999998653 334689999996
No 184
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.12 E-value=2.5e-10 Score=102.20 Aligned_cols=86 Identities=23% Similarity=0.258 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCC
Q psy7834 43 QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR 122 (492)
Q Consensus 43 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 122 (492)
.+++++.+ .+.++.+|||+|||+|.++..+++.. .+|+++|+++.|++.++++... . .+++++++|+.
T Consensus 2 ~~~i~~~~--~~~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~--~-----~~v~ii~~D~~ 69 (169)
T smart00650 2 IDKIVRAA--NLRPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAA--A-----DNLTVIHGDAL 69 (169)
T ss_pred HHHHHHhc--CCCCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhcc--C-----CCEEEEECchh
Confidence 35566666 67788899999999999999999984 7999999999999999998754 1 58999999999
Q ss_pred CCCCCCCcccceeccCcc
Q psy7834 123 KGYLDEAPYDIIHVGGSI 140 (492)
Q Consensus 123 ~~~~~~~~~D~i~~~~~~ 140 (492)
+.++++.+||.|+++...
T Consensus 70 ~~~~~~~~~d~vi~n~Py 87 (169)
T smart00650 70 KFDLPKLQPYKVVGNLPY 87 (169)
T ss_pred cCCccccCCCEEEECCCc
Confidence 988776679999987655
No 185
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=2.9e-10 Score=108.26 Aligned_cols=89 Identities=27% Similarity=0.303 Sum_probs=70.6
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCC
Q psy7834 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 123 (492)
Q Consensus 44 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 123 (492)
+.++++|....+++++|||+|||+|.++++.++.+. .+|+|+|+++-+++.|++|+..|+++ ..++....+...
T Consensus 150 ~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~v~----~~~~~~~~~~~~ 223 (300)
T COG2264 150 SLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNGVE----LLVQAKGFLLLE 223 (300)
T ss_pred HHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHHcCCc----hhhhcccccchh
Confidence 678888877788999999999999999999999863 68999999999999999999998873 223333333322
Q ss_pred CCCCCCcccceeccCc
Q psy7834 124 GYLDEAPYDIIHVGGS 139 (492)
Q Consensus 124 ~~~~~~~~D~i~~~~~ 139 (492)
. ....+||+|++|.-
T Consensus 224 ~-~~~~~~DvIVANIL 238 (300)
T COG2264 224 V-PENGPFDVIVANIL 238 (300)
T ss_pred h-cccCcccEEEehhh
Confidence 2 23469999999863
No 186
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.11 E-value=3e-10 Score=109.06 Aligned_cols=87 Identities=24% Similarity=0.357 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCC
Q psy7834 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 123 (492)
Q Consensus 44 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 123 (492)
+.+++.+ .+.++.+|||+|||+|.++..+++.. +.++|+|+|+|+.|++.|+++. .++.++.+|+..
T Consensus 21 ~~ll~~~--~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~----------~~~~~~~~d~~~ 87 (258)
T PRK01683 21 RDLLARV--PLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL----------PDCQFVEADIAS 87 (258)
T ss_pred HHHHhhC--CCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC----------CCCeEEECchhc
Confidence 3455554 56778999999999999999999986 4579999999999999999874 568899999887
Q ss_pred CCCCCCcccceeccCcccccc
Q psy7834 124 GYLDEAPYDIIHVGGSIEDIP 144 (492)
Q Consensus 124 ~~~~~~~~D~i~~~~~~~~l~ 144 (492)
.. +.++||+|+++.+++.+.
T Consensus 88 ~~-~~~~fD~v~~~~~l~~~~ 107 (258)
T PRK01683 88 WQ-PPQALDLIFANASLQWLP 107 (258)
T ss_pred cC-CCCCccEEEEccChhhCC
Confidence 64 456999999988876543
No 187
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=3.4e-10 Score=108.99 Aligned_cols=109 Identities=18% Similarity=0.248 Sum_probs=81.9
Q ss_pred CccccccccccCCcccCCccccccchhhhHHHHHHHHHHHhcCCCC-eEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCH
Q psy7834 13 RPYANCITNIGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGK-KVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIP 91 (492)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~ 91 (492)
..|....+-++.+..+.+|.. ..+++.+........ +|||+|||||..++.++... ++.+|+|+|+|+
T Consensus 76 ~~f~gl~~~v~~~vliPr~dT----------e~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~ 144 (280)
T COG2890 76 AEFGGLRFKVDEGVLIPRPDT----------ELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEG-PDAEVIAVDISP 144 (280)
T ss_pred CeecceeeeeCCCceecCCch----------HHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhC-cCCeEEEEECCH
Confidence 344445556677778888887 434443211222222 79999999999999999997 557999999999
Q ss_pred HHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccceeccCc
Q psy7834 92 QLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGS 139 (492)
Q Consensus 92 ~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~ 139 (492)
++++.|++|+..+++ .++.++++|.++-. .++||+|++|-.
T Consensus 145 ~Al~~A~~Na~~~~l-----~~~~~~~~dlf~~~--~~~fDlIVsNPP 185 (280)
T COG2890 145 DALALARENAERNGL-----VRVLVVQSDLFEPL--RGKFDLIVSNPP 185 (280)
T ss_pred HHHHHHHHHHHHcCC-----ccEEEEeeeccccc--CCceeEEEeCCC
Confidence 999999999999987 57888888876543 239999999643
No 188
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.10 E-value=1.9e-10 Score=118.63 Aligned_cols=102 Identities=25% Similarity=0.282 Sum_probs=87.1
Q ss_pred CcccCCccccccchhhhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcC
Q psy7834 25 GAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISG 104 (492)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~ 104 (492)
...+..++|+|...++.+...+++++ .+.++.+|||+|||+|.++..+++.. .+|+|+|++++|++.|+++++.+
T Consensus 263 ~~~~~~F~Q~N~~~~~~l~~~~~~~l--~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~ 337 (431)
T TIGR00479 263 SLSARDFFQVNSGQNEKLVDRALEAL--ELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELN 337 (431)
T ss_pred EECCCceeecCHHHHHHHHHHHHHHh--ccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHh
Confidence 34467788999999999999988888 67778899999999999999999986 69999999999999999999988
Q ss_pred CCCccccCceEEEecCCCCCC----CCCCcccceec
Q psy7834 105 NPEFVKDGRIKFVLGDGRKGY----LDEAPYDIIHV 136 (492)
Q Consensus 105 ~~~~~~~~~v~~~~~d~~~~~----~~~~~~D~i~~ 136 (492)
++ .+++++++|+.+.. ...++||+|++
T Consensus 338 ~~-----~nv~~~~~d~~~~l~~~~~~~~~~D~vi~ 368 (431)
T TIGR00479 338 GI-----ANVEFLAGTLETVLPKQPWAGQIPDVLLL 368 (431)
T ss_pred CC-----CceEEEeCCHHHHHHHHHhcCCCCCEEEE
Confidence 87 78999999986531 22456898865
No 189
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.10 E-value=5.9e-10 Score=108.28 Aligned_cols=114 Identities=19% Similarity=0.234 Sum_probs=81.7
Q ss_pred CccccccccccCCcccCCccccccchhhhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHH
Q psy7834 13 RPYANCITNIGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQ 92 (492)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~ 92 (492)
..|.+..+-++.+..+.+|.. ..+...+++.+. ...++.+|||+|||+|.++..++... ++.+|+|+|+|++
T Consensus 78 ~~f~g~~f~v~~~vliPr~et------e~lv~~~l~~~~-~~~~~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~ 149 (284)
T TIGR00536 78 KEFYGLEFFVNEHVLIPRPET------EELVEKALASLI-SQNPILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPD 149 (284)
T ss_pred ceEcCeEEEECCCCcCCCCcc------HHHHHHHHHHhh-hcCCCCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHH
Confidence 334444455666666667665 222333333221 11223689999999999999999986 5579999999999
Q ss_pred HHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccceeccCc
Q psy7834 93 LVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGS 139 (492)
Q Consensus 93 ~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~ 139 (492)
+++.|+++++.+++. .+++++++|..+. ++.++||+|+++-.
T Consensus 150 al~~a~~n~~~~~~~----~~v~~~~~d~~~~-~~~~~fDlIvsNPP 191 (284)
T TIGR00536 150 ALAVAEENAEKNQLE----HRVEFIQSNLFEP-LAGQKIDIIVSNPP 191 (284)
T ss_pred HHHHHHHHHHHcCCC----CcEEEEECchhcc-CcCCCccEEEECCC
Confidence 999999999888762 4699999998763 34458999999643
No 190
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.10 E-value=3.3e-10 Score=109.44 Aligned_cols=74 Identities=20% Similarity=0.334 Sum_probs=63.3
Q ss_pred CCCeEEEEcCcCcHHHHHHHHHhCCC--cEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccc
Q psy7834 56 EGKKVLDIGSGNGYFTALLAWCVGKT--GKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDI 133 (492)
Q Consensus 56 ~~~~vLDiG~G~G~~~~~la~~~~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 133 (492)
.+.+|||+|||+|.++..+++..+.. .+|+|+|+|++|++.|+++. ++++++++|+.++|+++++||+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----------~~~~~~~~d~~~lp~~~~sfD~ 154 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----------PQVTFCVASSHRLPFADQSLDA 154 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----------CCCeEEEeecccCCCcCCceeE
Confidence 45789999999999999999876321 37999999999999998753 5689999999999998899999
Q ss_pred eeccCc
Q psy7834 134 IHVGGS 139 (492)
Q Consensus 134 i~~~~~ 139 (492)
|++..+
T Consensus 155 I~~~~~ 160 (272)
T PRK11088 155 IIRIYA 160 (272)
T ss_pred EEEecC
Confidence 998654
No 191
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.09 E-value=3.7e-10 Score=101.36 Aligned_cols=92 Identities=20% Similarity=0.175 Sum_probs=71.4
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCC
Q psy7834 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 123 (492)
Q Consensus 44 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 123 (492)
..+++.+ ...++.++||+|||.|..+..||+++ -.|+++|+|+.+++.+++.+++.++ .++..+.|+.+
T Consensus 20 s~v~~a~--~~~~~g~~LDlgcG~GRNalyLA~~G---~~VtAvD~s~~al~~l~~~a~~~~l------~i~~~~~Dl~~ 88 (192)
T PF03848_consen 20 SEVLEAV--PLLKPGKALDLGCGEGRNALYLASQG---FDVTAVDISPVALEKLQRLAEEEGL------DIRTRVADLND 88 (192)
T ss_dssp HHHHHHC--TTS-SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-------TEEEEE-BGCC
T ss_pred HHHHHHH--hhcCCCcEEEcCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHhhcCc------eeEEEEecchh
Confidence 4455555 45567799999999999999999996 8999999999999999999888876 49999999988
Q ss_pred CCCCCCcccceeccCcccccccch
Q psy7834 124 GYLDEAPYDIIHVGGSIEDIPEGV 147 (492)
Q Consensus 124 ~~~~~~~~D~i~~~~~~~~l~~~L 147 (492)
..++ +.||+|+++.++..+.+..
T Consensus 89 ~~~~-~~yD~I~st~v~~fL~~~~ 111 (192)
T PF03848_consen 89 FDFP-EEYDFIVSTVVFMFLQREL 111 (192)
T ss_dssp BS-T-TTEEEEEEESSGGGS-GGG
T ss_pred cccc-CCcCEEEEEEEeccCCHHH
Confidence 7764 7899999987777665553
No 192
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.08 E-value=4.5e-10 Score=110.67 Aligned_cols=94 Identities=19% Similarity=0.170 Sum_probs=72.7
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCC
Q psy7834 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 123 (492)
Q Consensus 44 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 123 (492)
..+...+ ...++++|||||||+|+++..++... + .+|+|+|.|+.|+..++......+.. .+++++.+|+++
T Consensus 112 ~~l~~~l--~~l~g~~VLDIGCG~G~~~~~la~~g-~-~~V~GiD~S~~~l~q~~a~~~~~~~~----~~i~~~~~d~e~ 183 (322)
T PRK15068 112 DRVLPHL--SPLKGRTVLDVGCGNGYHMWRMLGAG-A-KLVVGIDPSQLFLCQFEAVRKLLGND----QRAHLLPLGIEQ 183 (322)
T ss_pred HHHHHhh--CCCCCCEEEEeccCCcHHHHHHHHcC-C-CEEEEEcCCHHHHHHHHHHHHhcCCC----CCeEEEeCCHHH
Confidence 4455555 45578999999999999999999985 3 47999999999997655433222211 579999999999
Q ss_pred CCCCCCcccceeccCcccccccc
Q psy7834 124 GYLDEAPYDIIHVGGSIEDIPEG 146 (492)
Q Consensus 124 ~~~~~~~~D~i~~~~~~~~l~~~ 146 (492)
++. .++||+|++..++++..+.
T Consensus 184 lp~-~~~FD~V~s~~vl~H~~dp 205 (322)
T PRK15068 184 LPA-LKAFDTVFSMGVLYHRRSP 205 (322)
T ss_pred CCC-cCCcCEEEECChhhccCCH
Confidence 987 7899999999888765443
No 193
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.08 E-value=1.3e-09 Score=100.62 Aligned_cols=105 Identities=14% Similarity=0.073 Sum_probs=79.7
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhh------CC-CCCCCCcEEEEEccCCCCCc
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTY------YP-NLMEGGRVQFVDGDGREGHA 281 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~------~~-~~~~~~~v~~~~~d~~~~~~ 281 (492)
+.++.+||+.|||.|..+..||.++. +|+|+|+|+.+++.+.+..... +. ......++++.++|+.++..
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~ 117 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK 117 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCc
Confidence 34678999999999999999999753 5999999999999986632100 00 00113479999999987643
Q ss_pred C---CCCccEEEecCcchhhHH--------HHHHHhccCCeEEEEe
Q psy7834 282 A---EGPYDVIYVGGAVHHYPF--------KLMDQLKPGGVMWFTI 316 (492)
Q Consensus 282 ~---~~~fD~i~s~~~~~~~~~--------~~~~~L~pgG~l~~~~ 316 (492)
. .++||+|+-..++.+++. .+.++|+|||.+++.+
T Consensus 118 ~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 118 IANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred cccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 1 368999998888887774 6788999999988754
No 194
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.08 E-value=2.7e-10 Score=114.74 Aligned_cols=104 Identities=18% Similarity=0.059 Sum_probs=86.5
Q ss_pred cCCcccCCccccccchhhhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhh
Q psy7834 23 GYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVI 102 (492)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~ 102 (492)
.+...+.+|.|+|...+..+...+.+++ ...++.+|||+|||+|.+++.++... .+|+|||+++.+++.|++|++
T Consensus 202 ~~~~~~~~F~Q~n~~~~~~l~~~~~~~l--~~~~~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~ 276 (374)
T TIGR02085 202 PLVIRPQSFFQTNPKVAAQLYATARQWV--REIPVTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQ 276 (374)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHHH--HhcCCCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHH
Confidence 3445678899999999999988888877 44467899999999999999999875 689999999999999999999
Q ss_pred cCCCCccccCceEEEecCCCCCCCC-CCcccceec
Q psy7834 103 SGNPEFVKDGRIKFVLGDGRKGYLD-EAPYDIIHV 136 (492)
Q Consensus 103 ~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D~i~~ 136 (492)
.+++ ++++|+++|+.+.... ..+||+|++
T Consensus 277 ~~~~-----~~~~~~~~d~~~~~~~~~~~~D~vi~ 306 (374)
T TIGR02085 277 MLGL-----DNLSFAALDSAKFATAQMSAPELVLV 306 (374)
T ss_pred HcCC-----CcEEEEECCHHHHHHhcCCCCCEEEE
Confidence 8887 6899999998764321 245898866
No 195
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.07 E-value=8.8e-10 Score=104.51 Aligned_cols=85 Identities=19% Similarity=0.290 Sum_probs=70.9
Q ss_pred cCCCCeEEEEcCcCcHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCccc
Q psy7834 54 LTEGKKVLDIGSGNGYFTALLAWCV-GKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYD 132 (492)
Q Consensus 54 ~~~~~~vLDiG~G~G~~~~~la~~~-~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 132 (492)
+.++.+|||+|||+|.++..+++.. .+..+|+|+|+|++|++.|++++...+.. .+++++++|+...+++ .+|
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~----~~v~~~~~d~~~~~~~--~~d 124 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE----IPVEILCNDIRHVEIK--NAS 124 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC----CCeEEEECChhhCCCC--CCC
Confidence 4577899999999999999999875 35689999999999999999998765532 5799999999887754 589
Q ss_pred ceeccCcccccc
Q psy7834 133 IIHVGGSIEDIP 144 (492)
Q Consensus 133 ~i~~~~~~~~l~ 144 (492)
+|+++.+++.+.
T Consensus 125 ~v~~~~~l~~~~ 136 (239)
T TIGR00740 125 MVILNFTLQFLP 136 (239)
T ss_pred EEeeecchhhCC
Confidence 999988876553
No 196
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=6.5e-10 Score=102.08 Aligned_cols=90 Identities=29% Similarity=0.441 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCC
Q psy7834 43 QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR 122 (492)
Q Consensus 43 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 122 (492)
...++..+ .+.+|++|||.|+|+|.++..||+.+++.++|++.|+.++..+.|++|+.+.++. +++++..+|+.
T Consensus 83 ~~~I~~~~--gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~----d~v~~~~~Dv~ 156 (256)
T COG2519 83 AGYIVARL--GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG----DRVTLKLGDVR 156 (256)
T ss_pred HHHHHHHc--CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc----cceEEEecccc
Confidence 46788888 9999999999999999999999999999999999999999999999999998884 56999999998
Q ss_pred CCCCCCCcccceeccCc
Q psy7834 123 KGYLDEAPYDIIHVGGS 139 (492)
Q Consensus 123 ~~~~~~~~~D~i~~~~~ 139 (492)
+...++ .||+|++...
T Consensus 157 ~~~~~~-~vDav~LDmp 172 (256)
T COG2519 157 EGIDEE-DVDAVFLDLP 172 (256)
T ss_pred cccccc-ccCEEEEcCC
Confidence 876654 9999999533
No 197
>PHA03411 putative methyltransferase; Provisional
Probab=99.07 E-value=7.7e-10 Score=104.10 Aligned_cols=78 Identities=22% Similarity=0.325 Sum_probs=63.5
Q ss_pred CCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEE
Q psy7834 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVI 289 (492)
Q Consensus 210 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i 289 (492)
..+.+|||+|||+|.++..++.+. +..+|+++|+|+.|++.|+++. ++++++++|+.+.. ...+||+|
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~----------~~v~~v~~D~~e~~-~~~kFDlI 130 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL----------PEAEWITSDVFEFE-SNEKFDVV 130 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC----------cCCEEEECchhhhc-ccCCCcEE
Confidence 446799999999999999888875 3468999999999999998763 25789999997643 34689999
Q ss_pred EecCcchhhH
Q psy7834 290 YVGGAVHHYP 299 (492)
Q Consensus 290 ~s~~~~~~~~ 299 (492)
+++..+.+.+
T Consensus 131 IsNPPF~~l~ 140 (279)
T PHA03411 131 ISNPPFGKIN 140 (279)
T ss_pred EEcCCccccC
Confidence 9998876543
No 198
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.07 E-value=6.2e-10 Score=108.25 Aligned_cols=89 Identities=24% Similarity=0.236 Sum_probs=69.8
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCC
Q psy7834 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 123 (492)
Q Consensus 44 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 123 (492)
+.+++++.....++++|||+|||+|.++..+++.. . .+|+|+|+++.|++.|+++...+++. .++.+..++...
T Consensus 147 ~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g-~-~~V~avDid~~al~~a~~n~~~n~~~----~~~~~~~~~~~~ 220 (288)
T TIGR00406 147 SLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLG-A-AKVVGIDIDPLAVESARKNAELNQVS----DRLQVKLIYLEQ 220 (288)
T ss_pred HHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcC-C-CeEEEEECCHHHHHHHHHHHHHcCCC----cceEEEeccccc
Confidence 44555554445678999999999999999988764 2 69999999999999999999888773 567777776332
Q ss_pred CCCCCCcccceeccCcc
Q psy7834 124 GYLDEAPYDIIHVGGSI 140 (492)
Q Consensus 124 ~~~~~~~~D~i~~~~~~ 140 (492)
...++||+|+++...
T Consensus 221 --~~~~~fDlVvan~~~ 235 (288)
T TIGR00406 221 --PIEGKADVIVANILA 235 (288)
T ss_pred --ccCCCceEEEEecCH
Confidence 335789999997643
No 199
>PRK08317 hypothetical protein; Provisional
Probab=99.06 E-value=1e-09 Score=103.92 Aligned_cols=96 Identities=24% Similarity=0.420 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCC
Q psy7834 42 QQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDG 121 (492)
Q Consensus 42 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 121 (492)
+...+++.+ .+.++.+|||+|||+|.++..+++..++.++++|+|+++.+++.|+++..... .++++..+|+
T Consensus 7 ~~~~~~~~~--~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~------~~~~~~~~d~ 78 (241)
T PRK08317 7 YRARTFELL--AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG------PNVEFVRGDA 78 (241)
T ss_pred HHHHHHHHc--CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC------CceEEEeccc
Confidence 355666666 77888999999999999999999987666899999999999999998733221 5799999999
Q ss_pred CCCCCCCCcccceeccCccccccc
Q psy7834 122 RKGYLDEAPYDIIHVGGSIEDIPE 145 (492)
Q Consensus 122 ~~~~~~~~~~D~i~~~~~~~~l~~ 145 (492)
...++.+++||+|++...++++.+
T Consensus 79 ~~~~~~~~~~D~v~~~~~~~~~~~ 102 (241)
T PRK08317 79 DGLPFPDGSFDAVRSDRVLQHLED 102 (241)
T ss_pred ccCCCCCCCceEEEEechhhccCC
Confidence 888877889999999877765543
No 200
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.06 E-value=3.1e-10 Score=104.49 Aligned_cols=76 Identities=22% Similarity=0.273 Sum_probs=66.6
Q ss_pred CCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCC-CCCC--CCCCccc
Q psy7834 56 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDG-RKGY--LDEAPYD 132 (492)
Q Consensus 56 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-~~~~--~~~~~~D 132 (492)
++.+|||+|||+|..+..+++.. +..+|+|+|+|++|++.|+++....++ .+++++++|+ ..++ +++++||
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~-----~~v~~~~~d~~~~l~~~~~~~~~D 113 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGL-----TNLRLLCGDAVEVLLDMFPDGSLD 113 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCC-----CCEEEEecCHHHHHHHHcCccccc
Confidence 67899999999999999999986 557999999999999999999888776 6899999999 6655 5677899
Q ss_pred ceecc
Q psy7834 133 IIHVG 137 (492)
Q Consensus 133 ~i~~~ 137 (492)
.|+++
T Consensus 114 ~V~~~ 118 (202)
T PRK00121 114 RIYLN 118 (202)
T ss_pred eEEEE
Confidence 99874
No 201
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=9.2e-10 Score=96.31 Aligned_cols=94 Identities=22% Similarity=0.245 Sum_probs=73.8
Q ss_pred CCcccCCccccccchhhhHHHHHHHHHH-HhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhh
Q psy7834 24 YGAHMQAPFQDNTKFSKFQQAMVLDDLS-EELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVI 102 (492)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~ 102 (492)
..|+++++.. .+.++.... ...-+|++|+|+|||||.+++..+-.. + .+|+|+|+++++++.+++|..
T Consensus 21 LEQY~Tp~~~---------Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lG-a-~~V~~vdiD~~a~ei~r~N~~ 89 (198)
T COG2263 21 LEQYRTPAPL---------AAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLG-A-SRVLAVDIDPEALEIARANAE 89 (198)
T ss_pred ceecCCChHH---------HHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcC-C-cEEEEEecCHHHHHHHHHHHH
Confidence 4566666655 555555441 245578899999999999999999885 3 799999999999999999998
Q ss_pred cCCCCccccCceEEEecCCCCCCCCCCcccceecc
Q psy7834 103 SGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVG 137 (492)
Q Consensus 103 ~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~ 137 (492)
+.+ .++.|+++|+.+.. .++|.++.|
T Consensus 90 ~l~------g~v~f~~~dv~~~~---~~~dtvimN 115 (198)
T COG2263 90 ELL------GDVEFVVADVSDFR---GKFDTVIMN 115 (198)
T ss_pred hhC------CceEEEEcchhhcC---CccceEEEC
Confidence 832 68999999998764 567766654
No 202
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.05 E-value=9.2e-10 Score=108.14 Aligned_cols=81 Identities=25% Similarity=0.299 Sum_probs=69.0
Q ss_pred CCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccce
Q psy7834 55 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 134 (492)
Q Consensus 55 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i 134 (492)
.++.+|||+|||+|.++..+++.. +..+|+++|+|++|++.|+++... .+++++.+|++++++++++||+|
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~--------~~i~~i~gD~e~lp~~~~sFDvV 182 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL--------KECKIIEGDAEDLPFPTDYADRY 182 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhc--------cCCeEEeccHHhCCCCCCceeEE
Confidence 467899999999999999999886 337999999999999999987642 56889999999988888899999
Q ss_pred eccCcccccc
Q psy7834 135 HVGGSIEDIP 144 (492)
Q Consensus 135 ~~~~~~~~l~ 144 (492)
+++.+++.+.
T Consensus 183 Is~~~L~~~~ 192 (340)
T PLN02490 183 VSAGSIEYWP 192 (340)
T ss_pred EEcChhhhCC
Confidence 9977765443
No 203
>KOG3010|consensus
Probab=99.05 E-value=3.6e-10 Score=102.20 Aligned_cols=95 Identities=20% Similarity=0.253 Sum_probs=69.9
Q ss_pred CceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEEec
Q psy7834 213 AKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVG 292 (492)
Q Consensus 213 ~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~s~ 292 (492)
..++|+|||+|..++.+|... + +|+|+|+|+.|++.|++..+... ......+...+...+.-.+++.|+|.+.
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~-k--~VIatD~s~~mL~~a~k~~~~~y----~~t~~~ms~~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHY-K--EVIATDVSEAMLKVAKKHPPVTY----CHTPSTMSSDEMVDLLGGEESVDLITAA 107 (261)
T ss_pred ceEEEeccCCCcchHHHHHhh-h--hheeecCCHHHHHHhhcCCCccc----ccCCccccccccccccCCCcceeeehhh
Confidence 389999999998888999886 3 59999999999999987643311 0112233333443433347899999999
Q ss_pred CcchhhHH-----HHHHHhccCC-eEEE
Q psy7834 293 GAVHHYPF-----KLMDQLKPGG-VMWF 314 (492)
Q Consensus 293 ~~~~~~~~-----~~~~~L~pgG-~l~~ 314 (492)
.++||+.- ++.|+||+.| .+++
T Consensus 108 qa~HWFdle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 108 QAVHWFDLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred hhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence 99999873 7899998766 5555
No 204
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.05 E-value=5.6e-10 Score=98.80 Aligned_cols=78 Identities=22% Similarity=0.400 Sum_probs=66.2
Q ss_pred cCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCC--CCCCcc
Q psy7834 54 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY--LDEAPY 131 (492)
Q Consensus 54 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~ 131 (492)
+++|++|||+|||.|.+...|.+.- +.+.+|||++++.+..+.++ .+..+++|+.+.. +++++|
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~r------------Gv~Viq~Dld~gL~~f~d~sF 76 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVAR------------GVSVIQGDLDEGLADFPDQSF 76 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHHc------------CCCEEECCHHHhHhhCCCCCc
Confidence 5689999999999999999998864 38999999999999888763 3679999987753 689999
Q ss_pred cceeccCccccccc
Q psy7834 132 DIIHVGGSIEDIPE 145 (492)
Q Consensus 132 D~i~~~~~~~~l~~ 145 (492)
|.|+++.+++.+.+
T Consensus 77 D~VIlsqtLQ~~~~ 90 (193)
T PF07021_consen 77 DYVILSQTLQAVRR 90 (193)
T ss_pred cEEehHhHHHhHhH
Confidence 99999999885543
No 205
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.05 E-value=7.4e-10 Score=108.09 Aligned_cols=97 Identities=22% Similarity=0.178 Sum_probs=71.2
Q ss_pred HHHHHHHHHHh-cCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCC
Q psy7834 43 QAMVLDDLSEE-LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDG 121 (492)
Q Consensus 43 ~~~~~~~l~~~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 121 (492)
.+.+++++... ..++.+|||+|||+|.++..+++.. .+|+|+|+|++|++.|+++....+.......+++|.++|+
T Consensus 130 v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl 206 (315)
T PLN02585 130 VEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL 206 (315)
T ss_pred HHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence 34556665221 1357899999999999999999874 7999999999999999998765421000014689999997
Q ss_pred CCCCCCCCcccceeccCccccccc
Q psy7834 122 RKGYLDEAPYDIIHVGGSIEDIPE 145 (492)
Q Consensus 122 ~~~~~~~~~~D~i~~~~~~~~l~~ 145 (492)
.+. +++||+|++...+.++++
T Consensus 207 ~~l---~~~fD~Vv~~~vL~H~p~ 227 (315)
T PLN02585 207 ESL---SGKYDTVTCLDVLIHYPQ 227 (315)
T ss_pred hhc---CCCcCEEEEcCEEEecCH
Confidence 654 478999999877755443
No 206
>KOG1500|consensus
Probab=99.05 E-value=1.2e-10 Score=109.28 Aligned_cols=77 Identities=34% Similarity=0.448 Sum_probs=68.8
Q ss_pred CCeEEEEecCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhhcCCCCCCceeeeehhhhHHHHHHHhhcccccC
Q psy7834 396 GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFTEMAEKVMQLRVHMMSFTLE 475 (492)
Q Consensus 396 g~~vld~g~g~G~~~~~~a~~~g~~~~v~a~d~~~~~~~~a~~~l~~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~ 475 (492)
+..|+|+|||+|.++.+.+.. ...+|+|+|.++ |.+.|++. |.-|.+.++|+++.|.+|++.+|
T Consensus 178 ~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS~-MAqyA~~L-------------v~~N~~~~rItVI~GKiEdieLP 241 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQA--GAKKVYAVEASE-MAQYARKL-------------VASNNLADRITVIPGKIEDIELP 241 (517)
T ss_pred CcEEEEecCCccHHHHHHHHh--CcceEEEEehhH-HHHHHHHH-------------HhcCCccceEEEccCccccccCc
Confidence 566799999999987777655 688999999996 99999998 66667889999999999999999
Q ss_pred CCeEEEEeccccc
Q psy7834 476 EQSIIILSSFMGR 488 (492)
Q Consensus 476 ~~~~~i~~~~~~~ 488 (492)
+++||||||.|||
T Consensus 242 Ek~DviISEPMG~ 254 (517)
T KOG1500|consen 242 EKVDVIISEPMGY 254 (517)
T ss_pred hhccEEEeccchh
Confidence 9999999999998
No 207
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.04 E-value=3.3e-10 Score=105.09 Aligned_cols=92 Identities=26% Similarity=0.378 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCC
Q psy7834 43 QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR 122 (492)
Q Consensus 43 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 122 (492)
-+.++.... .+....+|||+|||+|..++.+|+.. ++.+|++||++++|.+.|+++.+.++++ ++++++++|+.
T Consensus 32 DaiLL~~~~-~~~~~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~ln~l~----~ri~v~~~Di~ 105 (248)
T COG4123 32 DAILLAAFA-PVPKKGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVALNPLE----ERIQVIEADIK 105 (248)
T ss_pred HHHHHHhhc-ccccCCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHhCcch----hceeEehhhHH
Confidence 344444443 44457899999999999999999997 4489999999999999999999998886 89999999998
Q ss_pred CCCC--CCCcccceeccCcc
Q psy7834 123 KGYL--DEAPYDIIHVGGSI 140 (492)
Q Consensus 123 ~~~~--~~~~~D~i~~~~~~ 140 (492)
+... ...+||+|+||-..
T Consensus 106 ~~~~~~~~~~fD~Ii~NPPy 125 (248)
T COG4123 106 EFLKALVFASFDLIICNPPY 125 (248)
T ss_pred HhhhcccccccCEEEeCCCC
Confidence 8753 34579999996544
No 208
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.04 E-value=7.3e-10 Score=107.98 Aligned_cols=94 Identities=17% Similarity=0.132 Sum_probs=70.8
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCC
Q psy7834 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 123 (492)
Q Consensus 44 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 123 (492)
.+++..+ ...++++|||+|||+|+++..++... . .+|+|+|.|+.|+..++......+. ..++.+..+++++
T Consensus 111 ~~~l~~l--~~~~g~~VLDvGCG~G~~~~~~~~~g-~-~~v~GiDpS~~ml~q~~~~~~~~~~----~~~v~~~~~~ie~ 182 (314)
T TIGR00452 111 DRVLPHL--SPLKGRTILDVGCGSGYHMWRMLGHG-A-KSLVGIDPTVLFLCQFEAVRKLLDN----DKRAILEPLGIEQ 182 (314)
T ss_pred HHHHHhc--CCCCCCEEEEeccCCcHHHHHHHHcC-C-CEEEEEcCCHHHHHHHHHHHHHhcc----CCCeEEEECCHHH
Confidence 3455554 56778999999999999999998874 3 4899999999998765433221111 1578899999988
Q ss_pred CCCCCCcccceeccCcccccccc
Q psy7834 124 GYLDEAPYDIIHVGGSIEDIPEG 146 (492)
Q Consensus 124 ~~~~~~~~D~i~~~~~~~~l~~~ 146 (492)
++.. ++||+|++..+++++.+.
T Consensus 183 lp~~-~~FD~V~s~gvL~H~~dp 204 (314)
T TIGR00452 183 LHEL-YAFDTVFSMGVLYHRKSP 204 (314)
T ss_pred CCCC-CCcCEEEEcchhhccCCH
Confidence 8753 589999999988876544
No 209
>PRK04266 fibrillarin; Provisional
Probab=99.04 E-value=7.7e-10 Score=103.12 Aligned_cols=79 Identities=23% Similarity=0.249 Sum_probs=64.1
Q ss_pred hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCC---CCCC
Q psy7834 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY---LDEA 129 (492)
Q Consensus 53 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~ 129 (492)
.+.++.+|||+|||+|.++..+++.++ .++|+|+|+++.|++.+.+++++. .|+.++.+|+.... ...+
T Consensus 69 ~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~-------~nv~~i~~D~~~~~~~~~l~~ 140 (226)
T PRK04266 69 PIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER-------KNIIPILADARKPERYAHVVE 140 (226)
T ss_pred CCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc-------CCcEEEECCCCCcchhhhccc
Confidence 778999999999999999999999984 579999999999999888776542 57899999986521 1135
Q ss_pred cccceeccCc
Q psy7834 130 PYDIIHVGGS 139 (492)
Q Consensus 130 ~~D~i~~~~~ 139 (492)
+||+|++...
T Consensus 141 ~~D~i~~d~~ 150 (226)
T PRK04266 141 KVDVIYQDVA 150 (226)
T ss_pred cCCEEEECCC
Confidence 6999997543
No 210
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.04 E-value=1.6e-09 Score=102.64 Aligned_cols=95 Identities=24% Similarity=0.445 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCC
Q psy7834 43 QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR 122 (492)
Q Consensus 43 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 122 (492)
...++..+ ...++.+|||+|||+|.++..+++..+++.+++++|+++.+++.++++...+++. .+++++.+|+.
T Consensus 40 ~~~~~~~~--~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~----~~~~~~~~d~~ 113 (239)
T PRK00216 40 RRKTIKWL--GVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLS----GNVEFVQGDAE 113 (239)
T ss_pred HHHHHHHh--CCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccc----cCeEEEecccc
Confidence 34555555 5567789999999999999999998744689999999999999999998765542 57999999999
Q ss_pred CCCCCCCcccceeccCccccc
Q psy7834 123 KGYLDEAPYDIIHVGGSIEDI 143 (492)
Q Consensus 123 ~~~~~~~~~D~i~~~~~~~~l 143 (492)
+.++..++||+|+++..++..
T Consensus 114 ~~~~~~~~~D~I~~~~~l~~~ 134 (239)
T PRK00216 114 ALPFPDNSFDAVTIAFGLRNV 134 (239)
T ss_pred cCCCCCCCccEEEEecccccC
Confidence 887777899999987666544
No 211
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.04 E-value=1.3e-09 Score=110.04 Aligned_cols=102 Identities=17% Similarity=0.185 Sum_probs=77.4
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCc----CCC
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHA----AEG 284 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~ 284 (492)
+.++.+|||+|||+|.++..++.. ...+|+++|+|+.+++.|++|+..++. ...+++++++|+.+... ..+
T Consensus 218 ~~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl---~~~~v~~i~~D~~~~l~~~~~~~~ 292 (396)
T PRK15128 218 YVENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKL---DLSKAEFVRDDVFKLLRTYRDRGE 292 (396)
T ss_pred hcCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCC---CCCcEEEEEccHHHHHHHHHhcCC
Confidence 346889999999999998876643 345899999999999999999998751 12479999999865421 245
Q ss_pred CccEEEecCcc---------------hhhHHHHHHHhccCCeEEEE
Q psy7834 285 PYDVIYVGGAV---------------HHYPFKLMDQLKPGGVMWFT 315 (492)
Q Consensus 285 ~fD~i~s~~~~---------------~~~~~~~~~~L~pgG~l~~~ 315 (492)
+||+|+++... ..+.....++|+|||.++..
T Consensus 293 ~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~ 338 (396)
T PRK15128 293 KFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTF 338 (396)
T ss_pred CCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 89999998542 11112467899999998864
No 212
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.03 E-value=2.9e-10 Score=113.38 Aligned_cols=91 Identities=29% Similarity=0.359 Sum_probs=73.3
Q ss_pred cCCcccCCccccccchhhhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhh
Q psy7834 23 GYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVI 102 (492)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~ 102 (492)
.+...+.+|+|+|...+..+.+.+++++ ...++ .|||+.||+|.+|+.||+.+ .+|+|||+++++++.|++|++
T Consensus 166 ~~~~~~~sFfQvN~~~~~~l~~~~~~~l--~~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~ 239 (352)
T PF05958_consen 166 SFRISPGSFFQVNPEQNEKLYEQALEWL--DLSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAK 239 (352)
T ss_dssp EEEEETTS---SBHHHHHHHHHHHHHHC--TT-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHH
T ss_pred EEEECCCcCccCcHHHHHHHHHHHHHHh--hcCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHH
Confidence 3455678999999999999999999998 66555 79999999999999999998 799999999999999999999
Q ss_pred cCCCCccccCceEEEecCCCCC
Q psy7834 103 SGNPEFVKDGRIKFVLGDGRKG 124 (492)
Q Consensus 103 ~~~~~~~~~~~v~~~~~d~~~~ 124 (492)
.+++ .|++|+++++++.
T Consensus 240 ~N~i-----~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 240 LNGI-----DNVEFIRGDAEDF 256 (352)
T ss_dssp HTT-------SEEEEE--SHHC
T ss_pred HcCC-----CcceEEEeeccch
Confidence 9998 7999999998765
No 213
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.02 E-value=2.8e-09 Score=86.05 Aligned_cols=95 Identities=33% Similarity=0.499 Sum_probs=75.0
Q ss_pred ceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCc-CCCCccEEEec
Q psy7834 214 KVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHA-AEGPYDVIYVG 292 (492)
Q Consensus 214 ~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~i~s~ 292 (492)
+++|+|||+|.++..+++ ....+++++|+++.+++.+++..... ...++.++..|..+... ..++||+|+++
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~i~~~ 73 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAAL-----LADNVEVLKGDAEELPPEADESFDVIISD 73 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcc-----cccceEEEEcChhhhccccCCceEEEEEc
Confidence 589999999999999987 25678999999999999988543321 23578999999876543 45789999999
Q ss_pred Ccchh-h------HHHHHHHhccCCeEEEE
Q psy7834 293 GAVHH-Y------PFKLMDQLKPGGVMWFT 315 (492)
Q Consensus 293 ~~~~~-~------~~~~~~~L~pgG~l~~~ 315 (492)
..+++ . ...+.+.|+|||.+++.
T Consensus 74 ~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 74 PPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred cceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 88765 2 13678899999999885
No 214
>PRK01581 speE spermidine synthase; Validated
Probab=99.02 E-value=2.4e-09 Score=104.63 Aligned_cols=108 Identities=17% Similarity=0.138 Sum_probs=78.9
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH--HHhhCCCCCCCCcEEEEEccCCCCC-cCCCC
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKS--MHTYYPNLMEGGRVQFVDGDGREGH-AAEGP 285 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~--~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~ 285 (492)
.....+||++|||+|..+..+.+.. +..+|+++|++++|++.|++. +...+......++++++.+|+.+.. ...++
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~ 226 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSL 226 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCC
Confidence 3456799999999999988888753 457899999999999999962 1111111123578999999987532 23568
Q ss_pred ccEEEecCcch-----------hhHHHHHHHhccCCeEEEEeC
Q psy7834 286 YDVIYVGGAVH-----------HYPFKLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 286 fD~i~s~~~~~-----------~~~~~~~~~L~pgG~l~~~~~ 317 (492)
||+|+++..-+ .+-..+.+.|+|||++++...
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 99999885321 122478899999999988643
No 215
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.02 E-value=9.8e-10 Score=106.96 Aligned_cols=87 Identities=22% Similarity=0.199 Sum_probs=70.9
Q ss_pred HHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCC
Q psy7834 45 MVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKG 124 (492)
Q Consensus 45 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 124 (492)
.+++.+ ...++.+|||+|||+|.++..+++.. .+|+|+|+|+.|++.++++++..++ ++++.+.|+...
T Consensus 111 ~~~~~~--~~~~~~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~l------~v~~~~~D~~~~ 179 (287)
T PRK12335 111 EVLEAV--QTVKPGKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKENL------NIRTGLYDINSA 179 (287)
T ss_pred HHHHHh--hccCCCCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcCC------ceEEEEechhcc
Confidence 344444 23355699999999999999999974 7999999999999999999887664 688999998776
Q ss_pred CCCCCcccceeccCccccc
Q psy7834 125 YLDEAPYDIIHVGGSIEDI 143 (492)
Q Consensus 125 ~~~~~~~D~i~~~~~~~~l 143 (492)
.+ +++||+|++..+++.+
T Consensus 180 ~~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 180 SI-QEEYDFILSTVVLMFL 197 (287)
T ss_pred cc-cCCccEEEEcchhhhC
Confidence 54 6789999998877654
No 216
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.02 E-value=1.1e-09 Score=105.57 Aligned_cols=89 Identities=27% Similarity=0.356 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCC
Q psy7834 43 QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR 122 (492)
Q Consensus 43 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 122 (492)
.+.++++|.....++++|||+|||||.++++.++.+. .+|+|+|+++.+++.|++|++.|+++ .++... ...
T Consensus 148 T~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA--~~v~a~DiDp~Av~~a~~N~~~N~~~----~~~~v~--~~~ 219 (295)
T PF06325_consen 148 TRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGA--KKVVAIDIDPLAVEAARENAELNGVE----DRIEVS--LSE 219 (295)
T ss_dssp HHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTB--SEEEEEESSCHHHHHHHHHHHHTT-T----TCEEES--CTS
T ss_pred HHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHHcCCC----eeEEEE--Eec
Confidence 3677777776778899999999999999999999853 68999999999999999999999984 555442 222
Q ss_pred CCCCCCCcccceeccCccc
Q psy7834 123 KGYLDEAPYDIIHVGGSIE 141 (492)
Q Consensus 123 ~~~~~~~~~D~i~~~~~~~ 141 (492)
+ ....+||+|++|....
T Consensus 220 ~--~~~~~~dlvvANI~~~ 236 (295)
T PF06325_consen 220 D--LVEGKFDLVVANILAD 236 (295)
T ss_dssp C--TCCS-EEEEEEES-HH
T ss_pred c--cccccCCEEEECCCHH
Confidence 2 2348999999986654
No 217
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.02 E-value=1e-09 Score=100.38 Aligned_cols=79 Identities=18% Similarity=0.205 Sum_probs=68.5
Q ss_pred CCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCC---CCCCccc
Q psy7834 56 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY---LDEAPYD 132 (492)
Q Consensus 56 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~D 132 (492)
...++||||||+|.++..+++.. ++.+|+|+|++++|++.|++++.+.++ .|++++++|+.+++ ++++++|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l-----~ni~~i~~d~~~~~~~~~~~~~~d 89 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGL-----KNLHVLCGDANELLDKFFPDGSLS 89 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCC-----CCEEEEccCHHHHHHhhCCCCcee
Confidence 45689999999999999999986 668999999999999999999988887 69999999997653 3456899
Q ss_pred ceeccCcc
Q psy7834 133 IIHVGGSI 140 (492)
Q Consensus 133 ~i~~~~~~ 140 (492)
.|+++...
T Consensus 90 ~v~~~~pd 97 (194)
T TIGR00091 90 KVFLNFPD 97 (194)
T ss_pred EEEEECCC
Confidence 99987543
No 218
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.01 E-value=1.5e-09 Score=102.25 Aligned_cols=91 Identities=26% Similarity=0.322 Sum_probs=71.4
Q ss_pred HHHHHHHHH-hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCC
Q psy7834 44 AMVLDDLSE-ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR 122 (492)
Q Consensus 44 ~~~~~~l~~-~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 122 (492)
..+++++.. ...++.+|||+|||+|.++..+++.. .+|+++|+|++|++.|+++....+.. .++++..+|..
T Consensus 50 ~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~~----~~i~~~~~d~~ 122 (230)
T PRK07580 50 DTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAGLA----GNITFEVGDLE 122 (230)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCc----cCcEEEEcCch
Confidence 455555532 13567899999999999999999875 67999999999999999998776652 57999999943
Q ss_pred CCCCCCCcccceeccCcccccc
Q psy7834 123 KGYLDEAPYDIIHVGGSIEDIP 144 (492)
Q Consensus 123 ~~~~~~~~~D~i~~~~~~~~l~ 144 (492)
..+++||+|++..++++++
T Consensus 123 ---~~~~~fD~v~~~~~l~~~~ 141 (230)
T PRK07580 123 ---SLLGRFDTVVCLDVLIHYP 141 (230)
T ss_pred ---hccCCcCEEEEcchhhcCC
Confidence 3357899999987775543
No 219
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.01 E-value=1.4e-09 Score=107.98 Aligned_cols=92 Identities=24% Similarity=0.167 Sum_probs=77.9
Q ss_pred hhhhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEE
Q psy7834 38 FSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFV 117 (492)
Q Consensus 38 ~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~ 117 (492)
+...+.+.++.++ .++++++|||.|||||.++...+... .+|+|+|+++.|++.|+.|++.+++ .+++++
T Consensus 166 l~~~la~~~~~l~--~~~~g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~-----~~i~~~ 235 (329)
T TIGR01177 166 MDPKLARAMVNLA--RVTEGDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGI-----EDFFVK 235 (329)
T ss_pred CCHHHHHHHHHHh--CCCCcCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCC-----CCCeEE
Confidence 3444566666666 77889999999999999999887764 7999999999999999999998887 458999
Q ss_pred ecCCCCCCCCCCcccceeccCc
Q psy7834 118 LGDGRKGYLDEAPYDIIHVGGS 139 (492)
Q Consensus 118 ~~d~~~~~~~~~~~D~i~~~~~ 139 (492)
++|+.+++..+++||+|+++..
T Consensus 236 ~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 236 RGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred ecchhcCCcccCCCCEEEECCC
Confidence 9999998887789999998533
No 220
>KOG2187|consensus
Probab=99.01 E-value=2.9e-10 Score=113.38 Aligned_cols=98 Identities=24% Similarity=0.319 Sum_probs=90.0
Q ss_pred cccccccCCcccCCccccccchhhhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q psy7834 17 NCITNIGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQR 96 (492)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~ 96 (492)
+..+...+.+.+.+|+|.|..+|..+.+.+-+++ .+..++.++|+.||||.++..+|+.+ .+|+|||+++++++.
T Consensus 346 E~l~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~--~l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~d 420 (534)
T KOG2187|consen 346 ESLLGLTFRISPGAFFQTNTSAAEVLYSTIGEWA--GLPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVED 420 (534)
T ss_pred eecCCeEEEECCchhhccCcHHHHHHHHHHHHHh--CCCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcch
Confidence 4445566778899999999999999999999999 89999999999999999999999998 799999999999999
Q ss_pred HHHhhhcCCCCccccCceEEEecCCCCC
Q psy7834 97 ATHNVISGNPEFVKDGRIKFVLGDGRKG 124 (492)
Q Consensus 97 a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 124 (492)
|+.+++.+|+ .|.+|++|-++++
T Consensus 421 A~~nA~~Ngi-----sNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 421 AEKNAQINGI-----SNATFIVGQAEDL 443 (534)
T ss_pred hhhcchhcCc-----cceeeeecchhhc
Confidence 9999999999 7999999976664
No 221
>KOG1270|consensus
Probab=99.01 E-value=2.3e-10 Score=104.86 Aligned_cols=81 Identities=26% Similarity=0.437 Sum_probs=66.3
Q ss_pred CCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccC----ceEEEecCCCCCCCCCCccc
Q psy7834 57 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG----RIKFVLGDGRKGYLDEAPYD 132 (492)
Q Consensus 57 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~----~v~~~~~d~~~~~~~~~~~D 132 (492)
|++|||+|||+|.++..||+.+ +.|+|||++++||+.|++. ++.++ +... ++.+.+.|++... ++||
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h-~~~dP--~~~~~~~y~l~~~~~~~E~~~---~~fD 160 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEH-KKMDP--VLEGAIAYRLEYEDTDVEGLT---GKFD 160 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHh-hhcCc--hhccccceeeehhhcchhhcc---cccc
Confidence 5789999999999999999996 8999999999999999998 45443 2222 4778888887764 4599
Q ss_pred ceeccCcccccccc
Q psy7834 133 IIHVGGSIEDIPEG 146 (492)
Q Consensus 133 ~i~~~~~~~~l~~~ 146 (492)
+|++..+++++.+.
T Consensus 161 aVvcsevleHV~dp 174 (282)
T KOG1270|consen 161 AVVCSEVLEHVKDP 174 (282)
T ss_pred eeeeHHHHHHHhCH
Confidence 99999988876443
No 222
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=3.7e-09 Score=92.54 Aligned_cols=91 Identities=24% Similarity=0.305 Sum_probs=69.8
Q ss_pred ChHHHHHHHHHH-HhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEE
Q psy7834 194 SPKVHAQALEIL-KDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFV 272 (492)
Q Consensus 194 ~~~~~~~~~~~l-~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~ 272 (492)
.+.+.+.++... ....-.|.+|+|+|||||.++...+-.+ ..+|+|+|+++++++.+++|+.+. ..++.|+
T Consensus 27 p~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lG--a~~V~~vdiD~~a~ei~r~N~~~l------~g~v~f~ 98 (198)
T COG2263 27 PAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLG--ASRVLAVDIDPEALEIARANAEEL------LGDVEFV 98 (198)
T ss_pred ChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcC--CcEEEEEecCHHHHHHHHHHHHhh------CCceEEE
Confidence 344445544443 2223457789999999999999888765 348999999999999999999873 4679999
Q ss_pred EccCCCCCcCCCCccEEEecCcc
Q psy7834 273 DGDGREGHAAEGPYDVIYVGGAV 295 (492)
Q Consensus 273 ~~d~~~~~~~~~~fD~i~s~~~~ 295 (492)
.+|+.. ..++||.++.|..+
T Consensus 99 ~~dv~~---~~~~~dtvimNPPF 118 (198)
T COG2263 99 VADVSD---FRGKFDTVIMNPPF 118 (198)
T ss_pred Ecchhh---cCCccceEEECCCC
Confidence 999875 34679999888654
No 223
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.00 E-value=9.4e-10 Score=103.45 Aligned_cols=93 Identities=17% Similarity=0.274 Sum_probs=75.8
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCC
Q psy7834 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 123 (492)
Q Consensus 44 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 123 (492)
.+++.++. ...++++|||+|||+|+.++.+++..++.++|+++|+++++++.|+++++++++. ++++++.+|+.+
T Consensus 57 g~~L~~l~-~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~----~~i~~~~gda~~ 131 (234)
T PLN02781 57 GLFLSMLV-KIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD----HKINFIQSDALS 131 (234)
T ss_pred HHHHHHHH-HHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEEccHHH
Confidence 44444443 4557889999999999999999998766789999999999999999999999985 789999999876
Q ss_pred CCC------CCCcccceeccCccc
Q psy7834 124 GYL------DEAPYDIIHVGGSIE 141 (492)
Q Consensus 124 ~~~------~~~~~D~i~~~~~~~ 141 (492)
... +.++||+|++.....
T Consensus 132 ~L~~l~~~~~~~~fD~VfiDa~k~ 155 (234)
T PLN02781 132 ALDQLLNNDPKPEFDFAFVDADKP 155 (234)
T ss_pred HHHHHHhCCCCCCCCEEEECCCHH
Confidence 421 146899999975543
No 224
>PHA03412 putative methyltransferase; Provisional
Probab=99.00 E-value=2.8e-09 Score=98.09 Aligned_cols=92 Identities=14% Similarity=0.230 Sum_probs=67.7
Q ss_pred CCcccChHHHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCC
Q psy7834 189 GSVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVG--PTGKVYAVEHIEDLVAQANKSMHTYYPNLMEG 266 (492)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~ 266 (492)
|+..+.+.+...+. +. ...+.+|||+|||+|.++..++++.. +..+|+++|+++.+++.|+++..
T Consensus 31 GqFfTP~~iAr~~~--i~--~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~--------- 97 (241)
T PHA03412 31 GAFFTPIGLARDFT--ID--ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP--------- 97 (241)
T ss_pred CccCCCHHHHHHHH--Hh--ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc---------
Confidence 44445555444332 11 22367999999999999999988642 34689999999999999998743
Q ss_pred CcEEEEEccCCCCCcCCCCccEEEecCcc
Q psy7834 267 GRVQFVDGDGREGHAAEGPYDVIYVGGAV 295 (492)
Q Consensus 267 ~~v~~~~~d~~~~~~~~~~fD~i~s~~~~ 295 (492)
++.++++|+.... .+++||+|++|..+
T Consensus 98 -~~~~~~~D~~~~~-~~~~FDlIIsNPPY 124 (241)
T PHA03412 98 -EATWINADALTTE-FDTLFDMAISNPPF 124 (241)
T ss_pred -CCEEEEcchhccc-ccCCccEEEECCCC
Confidence 4789999986533 35689999999754
No 225
>PLN02366 spermidine synthase
Probab=99.00 E-value=2.9e-09 Score=103.61 Aligned_cols=105 Identities=25% Similarity=0.302 Sum_probs=80.9
Q ss_pred CCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCc--CCCCcc
Q psy7834 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHA--AEGPYD 287 (492)
Q Consensus 210 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD 287 (492)
+.+.+||+||||.|.++..+++.. +..+|+.+|+++.+++.|++.+...+.. ...++++++.+|+..... +.++||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~-~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVG-FDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccc-cCCCceEEEEChHHHHHhhccCCCCC
Confidence 567899999999999999998763 4568999999999999999988653211 235689999999754321 246899
Q ss_pred EEEecCcchh----------hHHHHHHHhccCCeEEEEe
Q psy7834 288 VIYVGGAVHH----------YPFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 288 ~i~s~~~~~~----------~~~~~~~~L~pgG~l~~~~ 316 (492)
+|++...-++ +-..+.+.|+|||+++...
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 9998764422 2247889999999998754
No 226
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.00 E-value=8e-10 Score=110.78 Aligned_cols=90 Identities=20% Similarity=0.188 Sum_probs=78.7
Q ss_pred CCcccCCccccccchhhhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhc
Q psy7834 24 YGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS 103 (492)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~ 103 (492)
+...+.+|+|+|...++.+...+.+++ ... +.+|||++||+|.+++.+++.. .+|+|||+++.|++.|++|+..
T Consensus 177 ~~~~~~sF~Q~N~~~~e~l~~~v~~~~--~~~-~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~ 250 (362)
T PRK05031 177 YRQVENSFTQPNAAVNEKMLEWALDAT--KGS-KGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAA 250 (362)
T ss_pred EEeCCCCeeccCHHHHHHHHHHHHHHh--hcC-CCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHH
Confidence 455678999999999999999988877 332 3579999999999999999986 6999999999999999999998
Q ss_pred CCCCccccCceEEEecCCCCC
Q psy7834 104 GNPEFVKDGRIKFVLGDGRKG 124 (492)
Q Consensus 104 ~~~~~~~~~~v~~~~~d~~~~ 124 (492)
+++ .+++|+++|+.+.
T Consensus 251 ~~~-----~~v~~~~~d~~~~ 266 (362)
T PRK05031 251 NGI-----DNVQIIRMSAEEF 266 (362)
T ss_pred hCC-----CcEEEEECCHHHH
Confidence 887 6899999998663
No 227
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.99 E-value=3e-09 Score=101.65 Aligned_cols=78 Identities=22% Similarity=0.285 Sum_probs=67.3
Q ss_pred CCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCccccee
Q psy7834 56 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIH 135 (492)
Q Consensus 56 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~ 135 (492)
.+.+|||+|||+|.++..+++.. +..+++|+|+++.+++.|+++....++ .+++++++|+.+ +++.++||+|+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~-----~~~~~~~~d~~~-~~~~~~fD~Vi 159 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGL-----DNVTFLQSDWFE-PLPGGKFDLIV 159 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC-----CeEEEEECchhc-cCcCCceeEEE
Confidence 45689999999999999999986 457999999999999999999988876 579999999876 34568899999
Q ss_pred ccCcc
Q psy7834 136 VGGSI 140 (492)
Q Consensus 136 ~~~~~ 140 (492)
++...
T Consensus 160 ~npPy 164 (251)
T TIGR03534 160 SNPPY 164 (251)
T ss_pred ECCCC
Confidence 86543
No 228
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.99 E-value=2.2e-09 Score=108.12 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHhcc--CCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEE
Q psy7834 196 KVHAQALEILKDYL--KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVD 273 (492)
Q Consensus 196 ~~~~~~~~~l~~~~--~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~ 273 (492)
.+.+.+.+.+...+ .++.+|||+|||+|.++..++... .+|+|+|+++.+++.|++|++.++ ..+++|+.
T Consensus 216 ~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~-----~~~~~~~~ 287 (374)
T TIGR02085 216 KVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLG-----LDNLSFAA 287 (374)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEE
Confidence 33344444443322 356799999999999999999653 479999999999999999998864 34899999
Q ss_pred ccCCCCCc-CCCCccEEEecCcchhhHH---HHHHHhccCCeEEEEeCCCc
Q psy7834 274 GDGREGHA-AEGPYDVIYVGGAVHHYPF---KLMDQLKPGGVMWFTIGNAE 320 (492)
Q Consensus 274 ~d~~~~~~-~~~~fD~i~s~~~~~~~~~---~~~~~L~pgG~l~~~~~~~~ 320 (492)
+|+.+... ..++||+|+++..-..+.. +....++|++.+++++.+.+
T Consensus 288 ~d~~~~~~~~~~~~D~vi~DPPr~G~~~~~l~~l~~~~p~~ivyvsc~p~T 338 (374)
T TIGR02085 288 LDSAKFATAQMSAPELVLVNPPRRGIGKELCDYLSQMAPKFILYSSCNAQT 338 (374)
T ss_pred CCHHHHHHhcCCCCCEEEECCCCCCCcHHHHHHHHhcCCCeEEEEEeCHHH
Confidence 99865322 2246999999876543333 22345799999999998765
No 229
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.99 E-value=6.6e-10 Score=92.88 Aligned_cols=78 Identities=27% Similarity=0.452 Sum_probs=67.0
Q ss_pred CCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCC--CCCCcccce
Q psy7834 57 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY--LDEAPYDII 134 (492)
Q Consensus 57 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~i 134 (492)
|.+|||+|||+|.++..+++.. ..+++|+|+++..++.|+.++...+++ .+++++++|+.+.. ..+.+||+|
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~D~I 74 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLD----DRVEVIVGDARDLPEPLPDGKFDLI 74 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTT----TTEEEEESHHHHHHHTCTTT-EEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCC----ceEEEEECchhhchhhccCceeEEE
Confidence 5689999999999999999986 489999999999999999999998774 68999999998875 567899999
Q ss_pred eccCcc
Q psy7834 135 HVGGSI 140 (492)
Q Consensus 135 ~~~~~~ 140 (492)
+++-..
T Consensus 75 v~npP~ 80 (117)
T PF13659_consen 75 VTNPPY 80 (117)
T ss_dssp EE--ST
T ss_pred EECCCC
Confidence 996554
No 230
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.98 E-value=3.7e-09 Score=101.93 Aligned_cols=105 Identities=21% Similarity=0.211 Sum_probs=79.0
Q ss_pred CCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCC-cCCCCccE
Q psy7834 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGH-AAEGPYDV 288 (492)
Q Consensus 210 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~ 288 (492)
+.+.+||+||||+|.++..+++.. +..+|+++|+++++++.|++++...+.. ...++++++.+|+.+.. ...++||+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~-~~~~~v~i~~~D~~~~l~~~~~~yDv 148 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGS-YDDPRVDLQIDDGFKFLADTENTFDV 148 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhccc-ccCCceEEEECchHHHHHhCCCCccE
Confidence 345699999999999999888764 4568999999999999999987654211 12457889998875422 12468999
Q ss_pred EEecCcch----------hhHHHHHHHhccCCeEEEEe
Q psy7834 289 IYVGGAVH----------HYPFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 289 i~s~~~~~----------~~~~~~~~~L~pgG~l~~~~ 316 (492)
|+++...+ .+-+.+.+.|+|||++++..
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 99876421 22247889999999999853
No 231
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.97 E-value=1.7e-10 Score=103.13 Aligned_cols=109 Identities=19% Similarity=0.305 Sum_probs=76.4
Q ss_pred ChHHHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEE
Q psy7834 194 SPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVD 273 (492)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~ 273 (492)
.|...+.++..+. ..+-.++||+|||||..+..|-.+.. +++|+|+|++|+++|.++=- . =++.+
T Consensus 110 vP~~l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eKg~--------Y--D~L~~ 174 (287)
T COG4976 110 VPELLAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEKGL--------Y--DTLYV 174 (287)
T ss_pred cHHHHHHHHHhcc--CCccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhccc--------h--HHHHH
Confidence 3445555555543 33457999999999999998877652 59999999999999987511 0 12334
Q ss_pred ccCCCCC--cCCCCccEEEecCcchhhH------HHHHHHhccCCeEEEEeC
Q psy7834 274 GDGREGH--AAEGPYDVIYVGGAVHHYP------FKLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 274 ~d~~~~~--~~~~~fD~i~s~~~~~~~~------~~~~~~L~pgG~l~~~~~ 317 (492)
+|+.... ..+++||+|.+..++..+- .-....|+|||.+.|++-
T Consensus 175 Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 175 AEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred HHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEec
Confidence 4432211 2457899999887765544 367889999999999863
No 232
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.97 E-value=1.3e-09 Score=96.58 Aligned_cols=75 Identities=17% Similarity=0.316 Sum_probs=58.8
Q ss_pred CCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccceec
Q psy7834 57 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHV 136 (492)
Q Consensus 57 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~ 136 (492)
-.++||+|||+|.+|..||..+ .+++++|+|+.+++.|+++.... ++|+|+++|+.+.. +.++||+|++
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~-------~~V~~~~~dvp~~~-P~~~FDLIV~ 112 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGL-------PHVEWIQADVPEFW-PEGRFDLIVL 112 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT--------SSEEEEES-TTT----SS-EEEEEE
T ss_pred cceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCC-------CCeEEEECcCCCCC-CCCCeeEEEE
Confidence 3689999999999999999998 79999999999999999998653 68999999997753 5789999999
Q ss_pred cCcccc
Q psy7834 137 GGSIED 142 (492)
Q Consensus 137 ~~~~~~ 142 (492)
+..+.-
T Consensus 113 SEVlYY 118 (201)
T PF05401_consen 113 SEVLYY 118 (201)
T ss_dssp ES-GGG
T ss_pred ehHhHc
Confidence 876643
No 233
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.97 E-value=2.4e-09 Score=106.74 Aligned_cols=92 Identities=20% Similarity=0.321 Sum_probs=71.4
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCC
Q psy7834 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 123 (492)
Q Consensus 44 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 123 (492)
+.+++.+ ....+.+|||+|||+|.++..+++.. |..+|+++|+|+.|++.|+++++.++.+ ...+++++.+|+..
T Consensus 218 rllL~~l--p~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~--~~~~v~~~~~D~l~ 292 (378)
T PRK15001 218 RFFMQHL--PENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPE--ALDRCEFMINNALS 292 (378)
T ss_pred HHHHHhC--CcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcc--cCceEEEEEccccc
Confidence 3456665 33334699999999999999999985 6689999999999999999999877641 01378999999865
Q ss_pred CCCCCCcccceeccCccc
Q psy7834 124 GYLDEAPYDIIHVGGSIE 141 (492)
Q Consensus 124 ~~~~~~~~D~i~~~~~~~ 141 (492)
. .+.++||+|+++-.++
T Consensus 293 ~-~~~~~fDlIlsNPPfh 309 (378)
T PRK15001 293 G-VEPFRFNAVLCNPPFH 309 (378)
T ss_pred c-CCCCCEEEEEECcCcc
Confidence 4 2346899999975553
No 234
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.97 E-value=2e-09 Score=98.32 Aligned_cols=99 Identities=24% Similarity=0.425 Sum_probs=81.0
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEe-cCCC
Q psy7834 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVL-GDGR 122 (492)
Q Consensus 44 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~-~d~~ 122 (492)
..++.+|. ....+++||+||+++|+.+++||...+.+++++++|+++++.+.|++++++.|+. +++.++. +|+.
T Consensus 48 g~~L~~L~-~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~----~~i~~~~~gdal 122 (219)
T COG4122 48 GALLRLLA-RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD----DRIELLLGGDAL 122 (219)
T ss_pred HHHHHHHH-HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc----ceEEEEecCcHH
Confidence 44444443 5567899999999999999999999866899999999999999999999999995 6799999 5876
Q ss_pred CCCC--CCCcccceeccCcccccccch
Q psy7834 123 KGYL--DEAPYDIIHVGGSIEDIPEGV 147 (492)
Q Consensus 123 ~~~~--~~~~~D~i~~~~~~~~l~~~L 147 (492)
+... ..++||+|+........++.+
T Consensus 123 ~~l~~~~~~~fDliFIDadK~~yp~~l 149 (219)
T COG4122 123 DVLSRLLDGSFDLVFIDADKADYPEYL 149 (219)
T ss_pred HHHHhccCCCccEEEEeCChhhCHHHH
Confidence 5433 368999999987776555544
No 235
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.97 E-value=1.9e-09 Score=111.16 Aligned_cols=103 Identities=20% Similarity=0.196 Sum_probs=79.8
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCC----cCCC
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGH----AAEG 284 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~ 284 (492)
+.++.+|||+|||+|.++..+++.. .+|+|+|+++.|++.|++|+..++ ..+++|+.+|+.+.. ...+
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~-----~~nv~~~~~d~~~~l~~~~~~~~ 361 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNG-----IANVEFLAGTLETVLPKQPWAGQ 361 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhC-----CCceEEEeCCHHHHHHHHHhcCC
Confidence 4567899999999999999999874 379999999999999999998764 458999999986422 1235
Q ss_pred CccEEEecCcchh----hHHHHHHHhccCCeEEEEeCCCc
Q psy7834 285 PYDVIYVGGAVHH----YPFKLMDQLKPGGVMWFTIGNAE 320 (492)
Q Consensus 285 ~fD~i~s~~~~~~----~~~~~~~~L~pgG~l~~~~~~~~ 320 (492)
+||+|+.+..-.. +.+. ...++|++.+++++.+.+
T Consensus 362 ~~D~vi~dPPr~G~~~~~l~~-l~~l~~~~ivyvsc~p~t 400 (431)
T TIGR00479 362 IPDVLLLDPPRKGCAAEVLRT-IIELKPERIVYVSCNPAT 400 (431)
T ss_pred CCCEEEECcCCCCCCHHHHHH-HHhcCCCEEEEEcCCHHH
Confidence 7999998765322 2233 334889999999887654
No 236
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.97 E-value=1.3e-09 Score=108.87 Aligned_cols=90 Identities=18% Similarity=0.152 Sum_probs=77.7
Q ss_pred CCcccCCccccccchhhhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhc
Q psy7834 24 YGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS 103 (492)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~ 103 (492)
+.+...+|+|+|...+..+...+.+++ ... +.+|||+|||+|.+++.|++.. .+|+|||++++|++.|++|+..
T Consensus 168 ~~~~~~~F~Q~N~~~~~~l~~~v~~~~--~~~-~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~ 241 (353)
T TIGR02143 168 YRQVENSFTQPNAAVNIKMLEWACEVT--QGS-KGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAA 241 (353)
T ss_pred EEECCCCcccCCHHHHHHHHHHHHHHh--hcC-CCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHH
Confidence 344567899999999999999988877 432 3479999999999999999987 6999999999999999999999
Q ss_pred CCCCccccCceEEEecCCCCC
Q psy7834 104 GNPEFVKDGRIKFVLGDGRKG 124 (492)
Q Consensus 104 ~~~~~~~~~~v~~~~~d~~~~ 124 (492)
+++ .+++++++|+.+.
T Consensus 242 ~~~-----~~v~~~~~d~~~~ 257 (353)
T TIGR02143 242 NNI-----DNVQIIRMSAEEF 257 (353)
T ss_pred cCC-----CcEEEEEcCHHHH
Confidence 887 6899999998664
No 237
>PLN03075 nicotianamine synthase; Provisional
Probab=98.96 E-value=3.7e-09 Score=101.12 Aligned_cols=101 Identities=20% Similarity=0.081 Sum_probs=75.1
Q ss_pred ccccccchhhhHHHHHHHHHHHhcCCCCeEEEEcCcCc-HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhc-CCCCc
Q psy7834 31 PFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNG-YFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS-GNPEF 108 (492)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G-~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~-~~~~~ 108 (492)
|...|+.--..+.-.++..+ ...++++|+|||||.| +.++.++....++++++++|+++++++.|++++.+ .++.
T Consensus 100 py~~nY~~L~~lE~~~L~~~--~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~- 176 (296)
T PLN03075 100 PYYNNYLKLSKLEFDLLSQH--VNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLS- 176 (296)
T ss_pred CchHHHHHHHHHHHHHHHHh--hcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCcc-
Confidence 44455554444455555555 3347799999999966 44555555545778999999999999999999954 6663
Q ss_pred cccCceEEEecCCCCCCCCCCcccceecc
Q psy7834 109 VKDGRIKFVLGDGRKGYLDEAPYDIIHVG 137 (492)
Q Consensus 109 ~~~~~v~~~~~d~~~~~~~~~~~D~i~~~ 137 (492)
++++|.++|+.+.......||+|++.
T Consensus 177 ---~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 177 ---KRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred ---CCcEEEECchhhcccccCCcCEEEEe
Confidence 67999999998865445789999996
No 238
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.96 E-value=2e-09 Score=103.84 Aligned_cols=86 Identities=22% Similarity=0.185 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecC
Q psy7834 41 FQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGD 120 (492)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 120 (492)
.+.+.+++.+ .+.++++|||+|||+|.++..+++.. .+|+|+|++++|++.++++... ++++++++|
T Consensus 29 ~i~~~i~~~l--~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~--------~~v~~i~~D 95 (272)
T PRK00274 29 NILDKIVDAA--GPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE--------DNLTIIEGD 95 (272)
T ss_pred HHHHHHHHhc--CCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc--------CceEEEECh
Confidence 3467777777 77888999999999999999999996 5999999999999999987632 579999999
Q ss_pred CCCCCCCCCcccceeccCc
Q psy7834 121 GRKGYLDEAPYDIIHVGGS 139 (492)
Q Consensus 121 ~~~~~~~~~~~D~i~~~~~ 139 (492)
+.+.++++-.+|.|+++..
T Consensus 96 ~~~~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 96 ALKVDLSELQPLKVVANLP 114 (272)
T ss_pred hhcCCHHHcCcceEEEeCC
Confidence 9987654322577777644
No 239
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.96 E-value=4e-09 Score=95.33 Aligned_cols=80 Identities=21% Similarity=0.245 Sum_probs=66.7
Q ss_pred hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCccc
Q psy7834 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYD 132 (492)
Q Consensus 53 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 132 (492)
...++++|||+|||+|.++..+++.. .+|+++|+|++|++.++++...++. +++++++|..+.. .++||
T Consensus 16 ~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~d~~~~~--~~~fD 84 (179)
T TIGR00537 16 RELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV------GLDVVMTDLFKGV--RGKFD 84 (179)
T ss_pred HhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC------ceEEEEccccccc--CCccc
Confidence 34467899999999999999999985 4899999999999999999877653 6899999987654 35899
Q ss_pred ceeccCccccc
Q psy7834 133 IIHVGGSIEDI 143 (492)
Q Consensus 133 ~i~~~~~~~~l 143 (492)
+|+++......
T Consensus 85 ~Vi~n~p~~~~ 95 (179)
T TIGR00537 85 VILFNPPYLPL 95 (179)
T ss_pred EEEECCCCCCC
Confidence 99998766433
No 240
>PLN02672 methionine S-methyltransferase
Probab=98.96 E-value=9.7e-09 Score=113.77 Aligned_cols=115 Identities=18% Similarity=0.111 Sum_probs=85.0
Q ss_pred ccccccccccCCcccCCccccccchhhhHHHHHHHHHHHhc---CCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCC
Q psy7834 14 PYANCITNIGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEEL---TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHI 90 (492)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~ 90 (492)
.|....+-+.++..+.+|+. ..+++.|.... .++.+|||+|||+|.+++.+++.. +..+|+|+|+|
T Consensus 83 ~F~~l~~~V~p~VLIPRpeT----------E~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis 151 (1082)
T PLN02672 83 NRKKLTMMEIPSIFIPEDWS----------FTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKW-LPSKVYGLDIN 151 (1082)
T ss_pred EecCCceeeCCCcccCchhH----------HHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHC-CCCEEEEEECC
Confidence 45556677888888999887 45555542111 135689999999999999999986 45799999999
Q ss_pred HHHHHHHHHhhhcCCCCc-----------cccCceEEEecCCCCCCCCC-CcccceeccCc
Q psy7834 91 PQLVQRATHNVISGNPEF-----------VKDGRIKFVLGDGRKGYLDE-APYDIIHVGGS 139 (492)
Q Consensus 91 ~~~~~~a~~~~~~~~~~~-----------~~~~~v~~~~~d~~~~~~~~-~~~D~i~~~~~ 139 (492)
+++++.|++|++.++++- -...+++|+++|+.+..... .+||+||+|-.
T Consensus 152 ~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPP 212 (1082)
T PLN02672 152 PRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIP 212 (1082)
T ss_pred HHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCC
Confidence 999999999998764310 00147999999987654222 36999999644
No 241
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.96 E-value=3e-09 Score=101.78 Aligned_cols=85 Identities=28% Similarity=0.361 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCC
Q psy7834 42 QQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDG 121 (492)
Q Consensus 42 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 121 (492)
+..++++.+ .+.++++|||+|||+|.++..+++.. .+|+++|+++.|++.++++... . ++++++++|+
T Consensus 17 ~~~~iv~~~--~~~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~--~-----~~v~ii~~D~ 84 (258)
T PRK14896 17 VVDRIVEYA--EDTDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIA--A-----GNVEIIEGDA 84 (258)
T ss_pred HHHHHHHhc--CCCCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhcc--C-----CCEEEEEecc
Confidence 367777777 77788999999999999999999985 7999999999999999988754 2 6899999999
Q ss_pred CCCCCCCCcccceeccCcc
Q psy7834 122 RKGYLDEAPYDIIHVGGSI 140 (492)
Q Consensus 122 ~~~~~~~~~~D~i~~~~~~ 140 (492)
.+.+++ .||.|+++...
T Consensus 85 ~~~~~~--~~d~Vv~NlPy 101 (258)
T PRK14896 85 LKVDLP--EFNKVVSNLPY 101 (258)
T ss_pred ccCCch--hceEEEEcCCc
Confidence 887654 58999887664
No 242
>PLN02476 O-methyltransferase
Probab=98.96 E-value=1.5e-09 Score=103.20 Aligned_cols=95 Identities=15% Similarity=0.228 Sum_probs=77.7
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCC
Q psy7834 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 123 (492)
Q Consensus 44 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 123 (492)
.+++.++. ...++++|||+|||+|+.++.+|+..+++++|+++|.++++.+.|++++++.|++ ++++++.||+.+
T Consensus 107 g~lL~~L~-~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~----~~I~li~GdA~e 181 (278)
T PLN02476 107 AQLLAMLV-QILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS----HKVNVKHGLAAE 181 (278)
T ss_pred HHHHHHHH-HhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEEcCHHH
Confidence 44444443 5557899999999999999999998877789999999999999999999999985 799999999866
Q ss_pred CCC------CCCcccceeccCccccc
Q psy7834 124 GYL------DEAPYDIIHVGGSIEDI 143 (492)
Q Consensus 124 ~~~------~~~~~D~i~~~~~~~~l 143 (492)
... ..++||+|+....-..+
T Consensus 182 ~L~~l~~~~~~~~FD~VFIDa~K~~Y 207 (278)
T PLN02476 182 SLKSMIQNGEGSSYDFAFVDADKRMY 207 (278)
T ss_pred HHHHHHhcccCCCCCEEEECCCHHHH
Confidence 421 13589999998765433
No 243
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.95 E-value=3.5e-09 Score=97.15 Aligned_cols=73 Identities=21% Similarity=0.325 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCC
Q psy7834 43 QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR 122 (492)
Q Consensus 43 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 122 (492)
...+++.+ .+.++.+|||+|||+|.++..+++.. +.++|+++|+|++|++.|+++++++++ .+++++++|+.
T Consensus 29 ~~~l~~~l--~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~-----~~v~~~~~d~~ 100 (196)
T PRK07402 29 RLLLISQL--RLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGV-----KNVEVIEGSAP 100 (196)
T ss_pred HHHHHHhc--CCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCC-----CCeEEEECchH
Confidence 34566666 67788999999999999999999874 458999999999999999999988876 68999999975
Q ss_pred C
Q psy7834 123 K 123 (492)
Q Consensus 123 ~ 123 (492)
+
T Consensus 101 ~ 101 (196)
T PRK07402 101 E 101 (196)
T ss_pred H
Confidence 4
No 244
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.95 E-value=3.7e-09 Score=99.03 Aligned_cols=89 Identities=26% Similarity=0.392 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCC
Q psy7834 43 QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR 122 (492)
Q Consensus 43 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 122 (492)
...++-++ ++.+|++|||.|+|+|.+|..|++.+++.++|+..|+.++.++.|+++++.+++. .++++.++|+.
T Consensus 29 ~~~I~~~l--~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~----~~v~~~~~Dv~ 102 (247)
T PF08704_consen 29 ISYILMRL--DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD----DNVTVHHRDVC 102 (247)
T ss_dssp HHHHHHHT--T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC----TTEEEEES-GG
T ss_pred HHHHHHHc--CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC----CCceeEeccee
Confidence 47788888 9999999999999999999999999999999999999999999999999999984 68999999986
Q ss_pred CCCCC---CCcccceecc
Q psy7834 123 KGYLD---EAPYDIIHVG 137 (492)
Q Consensus 123 ~~~~~---~~~~D~i~~~ 137 (492)
+.-+. +..+|+|++.
T Consensus 103 ~~g~~~~~~~~~DavfLD 120 (247)
T PF08704_consen 103 EEGFDEELESDFDAVFLD 120 (247)
T ss_dssp CG--STT-TTSEEEEEEE
T ss_pred cccccccccCcccEEEEe
Confidence 43332 3679999884
No 245
>PRK06922 hypothetical protein; Provisional
Probab=98.95 E-value=2.5e-09 Score=111.48 Aligned_cols=84 Identities=13% Similarity=0.319 Sum_probs=70.6
Q ss_pred hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCC--CCCCc
Q psy7834 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY--LDEAP 130 (492)
Q Consensus 53 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~ 130 (492)
+..++.+|||+|||+|.++..+++.. ++.+|+|+|+|+.|++.|+++....+ .+++++++|+.+++ +++++
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g------~~ie~I~gDa~dLp~~fedeS 487 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEG------RSWNVIKGDAINLSSSFEKES 487 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC------CCeEEEEcchHhCccccCCCC
Confidence 44478899999999999999999886 56899999999999999998875543 46889999998876 67789
Q ss_pred ccceeccCccccc
Q psy7834 131 YDIIHVGGSIEDI 143 (492)
Q Consensus 131 ~D~i~~~~~~~~l 143 (492)
||+|+++..++++
T Consensus 488 FDvVVsn~vLH~L 500 (677)
T PRK06922 488 VDTIVYSSILHEL 500 (677)
T ss_pred EEEEEEchHHHhh
Confidence 9999987766543
No 246
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.95 E-value=4.1e-09 Score=102.06 Aligned_cols=89 Identities=21% Similarity=0.324 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecC
Q psy7834 41 FQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGD 120 (492)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 120 (492)
.+..++++.+ .+.++++|||||||+|.+|..+++.. .+|+++|++++|++.+++++...+.. .+++++++|
T Consensus 23 ~i~~~Iv~~~--~~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~----~~v~ii~~D 93 (294)
T PTZ00338 23 LVLDKIVEKA--AIKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLA----SKLEVIEGD 93 (294)
T ss_pred HHHHHHHHhc--CCCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCC----CcEEEEECC
Confidence 3477788777 77888999999999999999999985 68999999999999999998776532 689999999
Q ss_pred CCCCCCCCCcccceeccCcc
Q psy7834 121 GRKGYLDEAPYDIIHVGGSI 140 (492)
Q Consensus 121 ~~~~~~~~~~~D~i~~~~~~ 140 (492)
+.+.+. ..||.|+++...
T Consensus 94 al~~~~--~~~d~VvaNlPY 111 (294)
T PTZ00338 94 ALKTEF--PYFDVCVANVPY 111 (294)
T ss_pred Hhhhcc--cccCEEEecCCc
Confidence 987654 468988876544
No 247
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.94 E-value=3e-09 Score=101.39 Aligned_cols=82 Identities=28% Similarity=0.324 Sum_probs=63.2
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCC
Q psy7834 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 123 (492)
Q Consensus 44 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 123 (492)
+.+++.+.....++++|||+|||+|.++..+++.. . .+|+|+|+|+.|++.|+++...+++. .++.+..+|.
T Consensus 107 ~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g-~-~~v~giDis~~~l~~A~~n~~~~~~~----~~~~~~~~~~-- 178 (250)
T PRK00517 107 RLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLG-A-KKVLAVDIDPQAVEAARENAELNGVE----LNVYLPQGDL-- 178 (250)
T ss_pred HHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcC-C-CeEEEEECCHHHHHHHHHHHHHcCCC----ceEEEccCCC--
Confidence 45555554446688999999999999999888764 3 47999999999999999999887762 3455544432
Q ss_pred CCCCCCcccceeccCc
Q psy7834 124 GYLDEAPYDIIHVGGS 139 (492)
Q Consensus 124 ~~~~~~~~D~i~~~~~ 139 (492)
+||+|+++..
T Consensus 179 ------~fD~Vvani~ 188 (250)
T PRK00517 179 ------KADVIVANIL 188 (250)
T ss_pred ------CcCEEEEcCc
Confidence 7999998754
No 248
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.94 E-value=4.6e-09 Score=95.75 Aligned_cols=99 Identities=28% Similarity=0.358 Sum_probs=78.4
Q ss_pred CceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCC---cCCCCccEE
Q psy7834 213 AKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGH---AAEGPYDVI 289 (492)
Q Consensus 213 ~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~i 289 (492)
..+||||||.|.+...+|+.. |+..++|+|++...+..|.+++... +..|+.++++|+.... .+++++|.|
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~-----~l~Nv~~~~~da~~~l~~~~~~~~v~~i 92 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKR-----GLKNVRFLRGDARELLRRLFPPGSVDRI 92 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHH-----TTSSEEEEES-CTTHHHHHSTTTSEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhh-----cccceEEEEccHHHHHhhcccCCchheE
Confidence 489999999999999999987 8899999999999999999998876 3579999999987632 356899999
Q ss_pred EecCcchhhH--------------HHHHHHhccCCeEEEEeC
Q psy7834 290 YVGGAVHHYP--------------FKLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 290 ~s~~~~~~~~--------------~~~~~~L~pgG~l~~~~~ 317 (492)
+.+..-+|.. +.+.+.|+|||.+.+.+.
T Consensus 93 ~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 93 YINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp EEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred EEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 9887654332 378899999999999764
No 249
>PRK03612 spermidine synthase; Provisional
Probab=98.94 E-value=5.6e-09 Score=109.63 Aligned_cols=107 Identities=20% Similarity=0.212 Sum_probs=79.8
Q ss_pred CCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH--HHhhCCCCCCCCcEEEEEccCCCCC-cCCCCc
Q psy7834 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKS--MHTYYPNLMEGGRVQFVDGDGREGH-AAEGPY 286 (492)
Q Consensus 210 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~--~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~f 286 (492)
+++++|||+|||+|..+..+++.. +..+|+++|+++++++.|+++ +...+......++++++.+|+.+.. ...++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 557899999999999999998752 336999999999999999984 3322111123468999999987532 234689
Q ss_pred cEEEecCcchh-----------hHHHHHHHhccCCeEEEEeC
Q psy7834 287 DVIYVGGAVHH-----------YPFKLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 287 D~i~s~~~~~~-----------~~~~~~~~L~pgG~l~~~~~ 317 (492)
|+|+++...+. +-+.+.+.|||||++++...
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 99999865432 22478899999999999653
No 250
>PHA03411 putative methyltransferase; Provisional
Probab=98.93 E-value=4.2e-09 Score=99.20 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=63.9
Q ss_pred cCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccc
Q psy7834 54 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDI 133 (492)
Q Consensus 54 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 133 (492)
...+.+|||+|||+|.++..+++.. +..+|+++|+++.|++.|+++. ++++++++|+.+.. ...+||+
T Consensus 62 ~~~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~----------~~v~~v~~D~~e~~-~~~kFDl 129 (279)
T PHA03411 62 AHCTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL----------PEAEWITSDVFEFE-SNEKFDV 129 (279)
T ss_pred cccCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC----------cCCEEEECchhhhc-ccCCCcE
Confidence 4456799999999999999998875 2269999999999999998864 46889999998765 3468999
Q ss_pred eeccCcccc
Q psy7834 134 IHVGGSIED 142 (492)
Q Consensus 134 i~~~~~~~~ 142 (492)
|+++-+...
T Consensus 130 IIsNPPF~~ 138 (279)
T PHA03411 130 VISNPPFGK 138 (279)
T ss_pred EEEcCCccc
Confidence 999877764
No 251
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.93 E-value=8.3e-09 Score=99.95 Aligned_cols=108 Identities=24% Similarity=0.341 Sum_probs=84.1
Q ss_pred CCcc-cChHHHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCC
Q psy7834 189 GSVM-SSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGG 267 (492)
Q Consensus 189 ~~~~-~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~ 267 (492)
|++. ..+.+...+++.+. +.++.+|||||||+|.+|..+++.. .+|+++|+++.|++.+++++...+ ..+
T Consensus 15 GQnFL~d~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~----~~~ 85 (294)
T PTZ00338 15 GQHILKNPLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSP----LAS 85 (294)
T ss_pred CccccCCHHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcC----CCC
Confidence 4444 56677777777664 6788999999999999999999874 369999999999999999987642 135
Q ss_pred cEEEEEccCCCCCcCCCCccEEEecCcchhhHHHHHHHhc
Q psy7834 268 RVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQLK 307 (492)
Q Consensus 268 ~v~~~~~d~~~~~~~~~~fD~i~s~~~~~~~~~~~~~~L~ 307 (492)
+++++++|+..... ..||.|++|...+.-...++++|.
T Consensus 86 ~v~ii~~Dal~~~~--~~~d~VvaNlPY~Istpil~~ll~ 123 (294)
T PTZ00338 86 KLEVIEGDALKTEF--PYFDVCVANVPYQISSPLVFKLLA 123 (294)
T ss_pred cEEEEECCHhhhcc--cccCEEEecCCcccCcHHHHHHHh
Confidence 79999999866432 469999999777655556666664
No 252
>KOG3420|consensus
Probab=98.93 E-value=1.2e-09 Score=90.53 Aligned_cols=103 Identities=19% Similarity=0.208 Sum_probs=84.3
Q ss_pred ccCCcccCCccccccchhhhHHHHHHHHHHH--hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy7834 22 IGYGAHMQAPFQDNTKFSKFQQAMVLDDLSE--ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATH 99 (492)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~ 99 (492)
+...|++++|.. ++-|+..+.. +-.+|+.++|+|||+|.++...+-.. ...|+|+||++++++.+++
T Consensus 21 ~~LEQY~T~p~i---------AasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~--~e~vlGfDIdpeALEIf~r 89 (185)
T KOG3420|consen 21 LLLEQYPTRPHI---------AASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPK--NESVLGFDIDPEALEIFTR 89 (185)
T ss_pred hhhhhCCCcHHH---------HHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCC--CceEEeeecCHHHHHHHhh
Confidence 445688999988 7777777643 33588999999999999996666543 3799999999999999999
Q ss_pred hhhcCCCCccccCceEEEecCCCCCCCCCCcccceeccCccc
Q psy7834 100 NVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIE 141 (492)
Q Consensus 100 ~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~ 141 (492)
|+++.-+ ++.++++|+.++.+....||.++.+-.+.
T Consensus 90 NaeEfEv------qidlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 90 NAEEFEV------QIDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred chHHhhh------hhheeeeeccchhccCCeEeeEEecCCCC
Confidence 9988765 57999999999888788999998875553
No 253
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.93 E-value=4.3e-09 Score=99.66 Aligned_cols=79 Identities=24% Similarity=0.394 Sum_probs=67.6
Q ss_pred CCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccce
Q psy7834 55 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 134 (492)
Q Consensus 55 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i 134 (492)
..+.+|||+|||+|.++..+++.. +..+++++|+++++++.++++.. .++.++.+|+.+.++++++||+|
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~---------~~~~~~~~d~~~~~~~~~~fD~v 102 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS---------ENVQFICGDAEKLPLEDSSFDLI 102 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC---------CCCeEEecchhhCCCCCCceeEE
Confidence 345789999999999999999985 56789999999999999988653 36889999999988888899999
Q ss_pred eccCccccc
Q psy7834 135 HVGGSIEDI 143 (492)
Q Consensus 135 ~~~~~~~~l 143 (492)
+++.+++..
T Consensus 103 i~~~~l~~~ 111 (240)
T TIGR02072 103 VSNLALQWC 111 (240)
T ss_pred EEhhhhhhc
Confidence 998777543
No 254
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.92 E-value=7.4e-09 Score=100.36 Aligned_cols=110 Identities=23% Similarity=0.290 Sum_probs=79.1
Q ss_pred cccccccccCCcccCCccccccchhhhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHH
Q psy7834 15 YANCITNIGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLV 94 (492)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~ 94 (492)
|.+..+-++.+..+.+|.. +.+...+++.+ ...++.+|||+|||+|.++..+++.. +..+|+++|+|+.++
T Consensus 75 f~~~~~~~~~~~lipr~~t------e~l~~~~~~~~--~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l 145 (275)
T PRK09328 75 FWGLDFKVSPGVLIPRPET------EELVEWALEAL--LLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEAL 145 (275)
T ss_pred EcCcEEEECCCceeCCCCc------HHHHHHHHHhc--cccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHH
Confidence 3334444555555666655 22233333222 34567899999999999999999986 568999999999999
Q ss_pred HHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccceeccCc
Q psy7834 95 QRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGS 139 (492)
Q Consensus 95 ~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~ 139 (492)
+.|+++.. .+.. .+++++++|+... ...++||+|+++-.
T Consensus 146 ~~a~~n~~-~~~~----~~i~~~~~d~~~~-~~~~~fD~Iv~npP 184 (275)
T PRK09328 146 AVARRNAK-HGLG----ARVEFLQGDWFEP-LPGGRFDLIVSNPP 184 (275)
T ss_pred HHHHHHHH-hCCC----CcEEEEEccccCc-CCCCceeEEEECCC
Confidence 99999987 2221 6899999998653 23578999999644
No 255
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.92 E-value=3.3e-09 Score=99.52 Aligned_cols=80 Identities=25% Similarity=0.280 Sum_probs=68.2
Q ss_pred CeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccceecc
Q psy7834 58 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVG 137 (492)
Q Consensus 58 ~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~ 137 (492)
++|||+|||+|.++..+++.. +..+|+|+|+|+++++.|+++....++. .+++++.+|..+.+.+ ++||+|++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~----~~i~~~~~d~~~~~~~-~~fD~I~~~ 74 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQ----GRIRIFYRDSAKDPFP-DTYDLVFGF 74 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCC----cceEEEecccccCCCC-CCCCEeehH
Confidence 479999999999999999986 4479999999999999999999887774 6899999998776553 589999987
Q ss_pred Cccccc
Q psy7834 138 GSIEDI 143 (492)
Q Consensus 138 ~~~~~l 143 (492)
.+++++
T Consensus 75 ~~l~~~ 80 (224)
T smart00828 75 EVIHHI 80 (224)
T ss_pred HHHHhC
Confidence 666544
No 256
>KOG1271|consensus
Probab=98.92 E-value=4e-09 Score=91.08 Aligned_cols=93 Identities=22% Similarity=0.285 Sum_probs=74.6
Q ss_pred HHHHHHHHHh-----cC-CCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEE
Q psy7834 44 AMVLDDLSEE-----LT-EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFV 117 (492)
Q Consensus 44 ~~~~~~l~~~-----~~-~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~ 117 (492)
.+++++|... +. ...+|||+|||+|.+...|++.. -.++++|+|.|+.+++.|+..++..+.+ +.|+|.
T Consensus 49 ~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~~~----n~I~f~ 123 (227)
T KOG1271|consen 49 ERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDGFS----NEIRFQ 123 (227)
T ss_pred HHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcCCC----cceeEE
Confidence 4556665421 22 33499999999999999999984 4578999999999999999999988873 459999
Q ss_pred ecCCCCCCCCCCcccceeccCccc
Q psy7834 118 LGDGRKGYLDEAPYDIIHVGGSIE 141 (492)
Q Consensus 118 ~~d~~~~~~~~~~~D~i~~~~~~~ 141 (492)
+.|+..-.+....||+|+--+.++
T Consensus 124 q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 124 QLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred EeeccCCcccccceeEEeecCcee
Confidence 999998777778999997755553
No 257
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.92 E-value=1.3e-08 Score=97.29 Aligned_cols=108 Identities=21% Similarity=0.210 Sum_probs=83.2
Q ss_pred cChHHHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEE
Q psy7834 193 SSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFV 272 (492)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~ 272 (492)
..+.+.+.+++.+. +.++.+|||+|||+|.++..++++. + +|+++|+++.|++.+++++.. .++++++
T Consensus 13 ~d~~i~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~-~--~v~~iE~d~~~~~~l~~~~~~-------~~~v~v~ 80 (253)
T TIGR00755 13 IDESVIQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRA-K--KVTAIEIDPRLAEILRKLLSL-------YERLEVI 80 (253)
T ss_pred CCHHHHHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhC-C--cEEEEECCHHHHHHHHHHhCc-------CCcEEEE
Confidence 45666777777764 5678899999999999999999986 3 599999999999999987643 2479999
Q ss_pred EccCCCCCcCCCCcc---EEEecCcchhhHHHHHHHh-ccCCeEEE
Q psy7834 273 DGDGREGHAAEGPYD---VIYVGGAVHHYPFKLMDQL-KPGGVMWF 314 (492)
Q Consensus 273 ~~d~~~~~~~~~~fD---~i~s~~~~~~~~~~~~~~L-~pgG~l~~ 314 (492)
++|+...+.. .|| .|++|..++.-..-+.++| .+++..++
T Consensus 81 ~~D~~~~~~~--~~d~~~~vvsNlPy~i~~~il~~ll~~~~~~~~~ 124 (253)
T TIGR00755 81 EGDALKVDLP--DFPKQLKVVSNLPYNISSPLIFKLLEKPKFRLAV 124 (253)
T ss_pred ECchhcCChh--HcCCcceEEEcCChhhHHHHHHHHhccCCCceEE
Confidence 9999765543 466 8899887765555667777 56655433
No 258
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.92 E-value=3.5e-10 Score=91.61 Aligned_cols=78 Identities=17% Similarity=0.274 Sum_probs=50.4
Q ss_pred EEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCC--CCCcccceeccC
Q psy7834 61 LDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL--DEAPYDIIHVGG 138 (492)
Q Consensus 61 LDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~D~i~~~~ 138 (492)
||+|||+|.++..+.+.. +..+++++|+|+.|++.|+++..+... .+...+..+..+... ..++||+|++..
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~fD~V~~~~ 74 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGN-----DNFERLRFDVLDLFDYDPPESFDLVVASN 74 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT--------EEEEE--SSS---CCC----SEEEEE-
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC-----cceeEEEeecCChhhcccccccceehhhh
Confidence 799999999999999995 558999999999999999998877653 344444444333321 126999999999
Q ss_pred cccccc
Q psy7834 139 SIEDIP 144 (492)
Q Consensus 139 ~~~~l~ 144 (492)
+++++.
T Consensus 75 vl~~l~ 80 (99)
T PF08242_consen 75 VLHHLE 80 (99)
T ss_dssp TTS--S
T ss_pred hHhhhh
Confidence 998773
No 259
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.92 E-value=3.1e-09 Score=97.36 Aligned_cols=78 Identities=22% Similarity=0.307 Sum_probs=62.9
Q ss_pred cCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCC-C-CCCCCcc
Q psy7834 54 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK-G-YLDEAPY 131 (492)
Q Consensus 54 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~-~~~~~~~ 131 (492)
+.++++|||+|||+|.++..+++..+ ..++|+|++++|++.|++ .+++++++|+.+ + ++++++|
T Consensus 11 i~~~~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~------------~~~~~~~~d~~~~l~~~~~~sf 76 (194)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVA------------RGVNVIQGDLDEGLEAFPDKSF 76 (194)
T ss_pred cCCCCEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHH------------cCCeEEEEEhhhcccccCCCCc
Confidence 44678999999999999999987643 678999999999998864 246788899865 3 3567889
Q ss_pred cceeccCccccccc
Q psy7834 132 DIIHVGGSIEDIPE 145 (492)
Q Consensus 132 D~i~~~~~~~~l~~ 145 (492)
|+|+++.+++++.+
T Consensus 77 D~Vi~~~~l~~~~d 90 (194)
T TIGR02081 77 DYVILSQTLQATRN 90 (194)
T ss_pred CEEEEhhHhHcCcC
Confidence 99999988876544
No 260
>PRK14967 putative methyltransferase; Provisional
Probab=98.92 E-value=6.1e-09 Score=97.60 Aligned_cols=77 Identities=22% Similarity=0.366 Sum_probs=64.8
Q ss_pred hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCccc
Q psy7834 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYD 132 (492)
Q Consensus 53 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 132 (492)
.+.++++|||+|||+|.++..+++.. . .+|+++|+++.+++.+++++..+++ +++++++|+.+. +++++||
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~~-~-~~v~~vD~s~~~l~~a~~n~~~~~~------~~~~~~~d~~~~-~~~~~fD 103 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAAG-A-GSVTAVDISRRAVRSARLNALLAGV------DVDVRRGDWARA-VEFRPFD 103 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHcC-C-CeEEEEECCHHHHHHHHHHHHHhCC------eeEEEECchhhh-ccCCCee
Confidence 46678899999999999999999863 2 5999999999999999999877664 588999998764 4567899
Q ss_pred ceeccC
Q psy7834 133 IIHVGG 138 (492)
Q Consensus 133 ~i~~~~ 138 (492)
+|+++.
T Consensus 104 ~Vi~np 109 (223)
T PRK14967 104 VVVSNP 109 (223)
T ss_pred EEEECC
Confidence 999864
No 261
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.91 E-value=6.6e-09 Score=103.74 Aligned_cols=115 Identities=15% Similarity=0.125 Sum_probs=83.9
Q ss_pred HHHHHHHHHhccC-CCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccC
Q psy7834 198 HAQALEILKDYLK-PGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDG 276 (492)
Q Consensus 198 ~~~~~~~l~~~~~-~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~ 276 (492)
...+++.+.+.+. .+.+|||+|||+|.++..+++.. . +|+|+|++++|++.|++|+..++ ..+++|+.+|+
T Consensus 183 ~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~-~--~v~~vE~~~~av~~a~~n~~~~~-----~~~v~~~~~d~ 254 (353)
T TIGR02143 183 NIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF-R--RVLATEIAKPSVNAAQYNIAANN-----IDNVQIIRMSA 254 (353)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC-C--EEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEEcCH
Confidence 3444444443333 23579999999999999999875 2 79999999999999999998764 45799999998
Q ss_pred CCCCcC----------C------CCccEEEecCcchhhHHHH-HHHhccCCeEEEEeCCCc
Q psy7834 277 REGHAA----------E------GPYDVIYVGGAVHHYPFKL-MDQLKPGGVMWFTIGNAE 320 (492)
Q Consensus 277 ~~~~~~----------~------~~fD~i~s~~~~~~~~~~~-~~~L~pgG~l~~~~~~~~ 320 (492)
.+.... . ..||+|+.+..-..+..++ ..+++|++.++++|.|.+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~~~~ivYvsC~p~t 315 (353)
T TIGR02143 255 EEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQAYERILYISCNPET 315 (353)
T ss_pred HHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHcCCcEEEEEcCHHH
Confidence 653221 1 1389999987644443444 444579999999998765
No 262
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.91 E-value=8e-09 Score=99.62 Aligned_cols=102 Identities=22% Similarity=0.240 Sum_probs=77.4
Q ss_pred cChHHHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEE
Q psy7834 193 SSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFV 272 (492)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~ 272 (492)
..+.+.+.+++.+. +.++.+|||+|||+|.++..++++. + +|+|+|++++|++.+++++.. ++++++
T Consensus 26 ~~~~i~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~-~--~v~avE~d~~~~~~~~~~~~~--------~~v~~i 92 (272)
T PRK00274 26 IDENILDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERA-A--KVTAVEIDRDLAPILAETFAE--------DNLTII 92 (272)
T ss_pred CCHHHHHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhC-C--cEEEEECCHHHHHHHHHhhcc--------CceEEE
Confidence 44556677777664 6778899999999999999999985 3 799999999999999887632 479999
Q ss_pred EccCCCCCcCCCCccEEEecCcchhhHHHHHHHhc
Q psy7834 273 DGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQLK 307 (492)
Q Consensus 273 ~~d~~~~~~~~~~fD~i~s~~~~~~~~~~~~~~L~ 307 (492)
++|+.+...++-.+|.|++|...+--..-+.+.|.
T Consensus 93 ~~D~~~~~~~~~~~~~vv~NlPY~iss~ii~~~l~ 127 (272)
T PRK00274 93 EGDALKVDLSELQPLKVVANLPYNITTPLLFHLLE 127 (272)
T ss_pred EChhhcCCHHHcCcceEEEeCCccchHHHHHHHHh
Confidence 99997754332225899998765443445566664
No 263
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.91 E-value=3.9e-09 Score=96.26 Aligned_cols=92 Identities=13% Similarity=0.103 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEec
Q psy7834 40 KFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLG 119 (492)
Q Consensus 40 ~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~ 119 (492)
..+.+.++.++. ...++.+|||+|||+|.+++.++.... .+|+++|+++++++.|++|++.+++ .+++++++
T Consensus 38 d~v~e~l~~~l~-~~~~~~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~-----~~v~~~~~ 109 (199)
T PRK10909 38 DRVRETLFNWLA-PVIVDARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKA-----GNARVVNT 109 (199)
T ss_pred HHHHHHHHHHHh-hhcCCCEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCC-----CcEEEEEc
Confidence 344445566652 224678999999999999996544432 6999999999999999999998887 68999999
Q ss_pred CCCCCCC-CCCcccceeccCc
Q psy7834 120 DGRKGYL-DEAPYDIIHVGGS 139 (492)
Q Consensus 120 d~~~~~~-~~~~~D~i~~~~~ 139 (492)
|+.+... ...+||+|+++-.
T Consensus 110 D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 110 NALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred hHHHHHhhcCCCceEEEECCC
Confidence 9876432 2357999998655
No 264
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.91 E-value=6.7e-09 Score=98.78 Aligned_cols=113 Identities=16% Similarity=0.142 Sum_probs=76.7
Q ss_pred CCccccccccccCCcccCCccccccchhhhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCH
Q psy7834 12 WRPYANCITNIGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIP 91 (492)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~ 91 (492)
+..|.+..+.++.+..+.++ -...+.+.+++++. ....+.+|||+|||+|.++..+++.. +..+|+++|+|+
T Consensus 49 ~~~f~g~~~~v~~~vf~pr~------~Te~Lv~~~l~~~~-~~~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~ 120 (251)
T TIGR03704 49 WAEFCGLRIAVDPGVFVPRR------RTEFLVDEAAALAR-PRSGTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDP 120 (251)
T ss_pred cCeEcCeEEEECCCCcCCCc------cHHHHHHHHHHhhc-ccCCCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCH
Confidence 33344444455555444333 23455555555441 12234589999999999999999886 336999999999
Q ss_pred HHHHHHHHhhhcCCCCccccCceEEEecCCCCCCC--CCCcccceeccCcc
Q psy7834 92 QLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL--DEAPYDIIHVGGSI 140 (492)
Q Consensus 92 ~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~D~i~~~~~~ 140 (492)
.+++.|++|++.++ ++++++|+.+... ..++||+|+++-..
T Consensus 121 ~al~~A~~N~~~~~--------~~~~~~D~~~~l~~~~~~~fDlVv~NPPy 163 (251)
T TIGR03704 121 AAVRCARRNLADAG--------GTVHEGDLYDALPTALRGRVDILAANAPY 163 (251)
T ss_pred HHHHHHHHHHHHcC--------CEEEEeechhhcchhcCCCEeEEEECCCC
Confidence 99999999987643 4789999865321 13579999986543
No 265
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.91 E-value=1.1e-08 Score=97.80 Aligned_cols=102 Identities=24% Similarity=0.277 Sum_probs=79.3
Q ss_pred cChHHHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEE
Q psy7834 193 SSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFV 272 (492)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~ 272 (492)
..+.+...+++.+. +.++.+|||+|||+|.+|..++++. .+|+++|+++.|++.+++++.. .++++++
T Consensus 13 ~d~~~~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~-------~~~v~ii 80 (258)
T PRK14896 13 IDDRVVDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIA-------AGNVEII 80 (258)
T ss_pred CCHHHHHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhcc-------CCCEEEE
Confidence 45666677777664 6778999999999999999999873 3799999999999999988753 2479999
Q ss_pred EccCCCCCcCCCCccEEEecCcchhhHHHHHHHhcc
Q psy7834 273 DGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQLKP 308 (492)
Q Consensus 273 ~~d~~~~~~~~~~fD~i~s~~~~~~~~~~~~~~L~p 308 (492)
++|+.+... ..||.|++|...+.-...+.+.++.
T Consensus 81 ~~D~~~~~~--~~~d~Vv~NlPy~i~s~~~~~l~~~ 114 (258)
T PRK14896 81 EGDALKVDL--PEFNKVVSNLPYQISSPITFKLLKH 114 (258)
T ss_pred EeccccCCc--hhceEEEEcCCcccCcHHHHHHHhh
Confidence 999976543 3589999998765433445555554
No 266
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=6e-09 Score=98.68 Aligned_cols=88 Identities=20% Similarity=0.256 Sum_probs=72.2
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCC
Q psy7834 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 123 (492)
Q Consensus 44 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 123 (492)
+.+++.| ....+.+|||+|||.|.+++.+++.. |+.+++.+|+|..+++.|++|+..+++ ++..++..|..+
T Consensus 148 ~lLl~~l--~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~-----~~~~v~~s~~~~ 219 (300)
T COG2813 148 RLLLETL--PPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGV-----ENTEVWASNLYE 219 (300)
T ss_pred HHHHHhC--CccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCC-----CccEEEEecccc
Confidence 4566666 44555699999999999999999996 679999999999999999999999987 455677777665
Q ss_pred CCCCCCcccceeccCccc
Q psy7834 124 GYLDEAPYDIIHVGGSIE 141 (492)
Q Consensus 124 ~~~~~~~~D~i~~~~~~~ 141 (492)
-.. ++||+|++|-.+|
T Consensus 220 ~v~--~kfd~IisNPPfh 235 (300)
T COG2813 220 PVE--GKFDLIISNPPFH 235 (300)
T ss_pred ccc--ccccEEEeCCCcc
Confidence 433 3999999977665
No 267
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.89 E-value=8.5e-09 Score=103.41 Aligned_cols=116 Identities=19% Similarity=0.182 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhccC-CCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEcc
Q psy7834 197 VHAQALEILKDYLK-PGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGD 275 (492)
Q Consensus 197 ~~~~~~~~l~~~~~-~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d 275 (492)
..+.+.+.+...+. .+.+|||++||+|.++..+++.. .+|+|+|+|+.|++.|++|+..++ ..+++|+.+|
T Consensus 191 ~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~-----~~~v~~~~~d 262 (362)
T PRK05031 191 VNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANG-----IDNVQIIRMS 262 (362)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhC-----CCcEEEEECC
Confidence 34445555444333 23579999999999999998864 379999999999999999998764 3589999999
Q ss_pred CCCCCcC----------------CCCccEEEecCcchhhHHHHHH-HhccCCeEEEEeCCCc
Q psy7834 276 GREGHAA----------------EGPYDVIYVGGAVHHYPFKLMD-QLKPGGVMWFTIGNAE 320 (492)
Q Consensus 276 ~~~~~~~----------------~~~fD~i~s~~~~~~~~~~~~~-~L~pgG~l~~~~~~~~ 320 (492)
+.+.... ..+||+|+.+..-..+..++.+ +.+|++.++++|.+.+
T Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~~~~ivyvSC~p~t 324 (362)
T PRK05031 263 AEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQAYERILYISCNPET 324 (362)
T ss_pred HHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHccCCEEEEEeCHHH
Confidence 8653210 1259999998765555455533 4468999999998754
No 268
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.89 E-value=6.5e-09 Score=103.14 Aligned_cols=87 Identities=21% Similarity=0.149 Sum_probs=73.9
Q ss_pred HHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCC
Q psy7834 45 MVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKG 124 (492)
Q Consensus 45 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 124 (492)
.+++.+ ....+..+||||||+|.++..+|+.. |+..++|+|+++.|++.|.+++.++++ .|+.++++|+..+
T Consensus 113 ~~~~~~--~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL-----~NV~~i~~DA~~l 184 (390)
T PRK14121 113 NFLDFI--SKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNL-----KNLLIINYDARLL 184 (390)
T ss_pred HHHHHh--cCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEECCHHHh
Confidence 455555 44566799999999999999999996 778999999999999999999988888 7899999998654
Q ss_pred --CCCCCcccceeccCc
Q psy7834 125 --YLDEAPYDIIHVGGS 139 (492)
Q Consensus 125 --~~~~~~~D~i~~~~~ 139 (492)
.++++++|.|+++..
T Consensus 185 l~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 185 LELLPSNSVEKIFVHFP 201 (390)
T ss_pred hhhCCCCceeEEEEeCC
Confidence 456789999988643
No 269
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.88 E-value=4.2e-09 Score=97.51 Aligned_cols=116 Identities=28% Similarity=0.377 Sum_probs=80.4
Q ss_pred cChHHHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh--hCCCC-----CC
Q psy7834 193 SSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHT--YYPNL-----ME 265 (492)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~--~~~~~-----~~ 265 (492)
..|.+.+..-. +. .+++.+||..|||.|+....||+++ .+|+|+|+|+.+++.+.+.... ..... ..
T Consensus 22 ~~p~L~~~~~~-l~--~~~~~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~ 95 (218)
T PF05724_consen 22 PNPALVEYLDS-LA--LKPGGRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQ 95 (218)
T ss_dssp STHHHHHHHHH-HT--TSTSEEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEET
T ss_pred CCHHHHHHHHh-cC--CCCCCeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHHhccCCCcccccceeeec
Confidence 44555443333 33 5677899999999999999999874 3699999999999998543221 00000 01
Q ss_pred CCcEEEEEccCCCCCcCC-CCccEEEecCcchhhHH--------HHHHHhccCCeEEE
Q psy7834 266 GGRVQFVDGDGREGHAAE-GPYDVIYVGGAVHHYPF--------KLMDQLKPGGVMWF 314 (492)
Q Consensus 266 ~~~v~~~~~d~~~~~~~~-~~fD~i~s~~~~~~~~~--------~~~~~L~pgG~l~~ 314 (492)
..+|++.++|+.+..... ++||+|+=..++..++. .+.++|+|||++++
T Consensus 96 ~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 96 AGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp TSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred CCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 346899999998755433 58999998877766663 78899999999443
No 270
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.88 E-value=3e-09 Score=97.39 Aligned_cols=98 Identities=28% Similarity=0.381 Sum_probs=77.5
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCC
Q psy7834 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 123 (492)
Q Consensus 44 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 123 (492)
.+++..+. .....++||+|||++|+.++++|+..+++++|+++|++++..+.|++++++.|+. ++|+++.+|+.+
T Consensus 34 g~lL~~l~-~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~----~~I~~~~gda~~ 108 (205)
T PF01596_consen 34 GQLLQMLV-RLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD----DRIEVIEGDALE 108 (205)
T ss_dssp HHHHHHHH-HHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG----GGEEEEES-HHH
T ss_pred HHHHHHHH-HhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC----CcEEEEEeccHh
Confidence 44455543 3446789999999999999999998877799999999999999999999999984 789999999866
Q ss_pred CCC------CCCcccceeccCcccccccc
Q psy7834 124 GYL------DEAPYDIIHVGGSIEDIPEG 146 (492)
Q Consensus 124 ~~~------~~~~~D~i~~~~~~~~l~~~ 146 (492)
... ..++||+|+...........
T Consensus 109 ~l~~l~~~~~~~~fD~VFiDa~K~~y~~y 137 (205)
T PF01596_consen 109 VLPELANDGEEGQFDFVFIDADKRNYLEY 137 (205)
T ss_dssp HHHHHHHTTTTTSEEEEEEESTGGGHHHH
T ss_pred hHHHHHhccCCCceeEEEEcccccchhhH
Confidence 321 13579999998776654443
No 271
>KOG1541|consensus
Probab=98.88 E-value=4.6e-09 Score=93.54 Aligned_cols=85 Identities=20% Similarity=0.265 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhcCC--CCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecC
Q psy7834 43 QAMVLDDLSEELTE--GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGD 120 (492)
Q Consensus 43 ~~~~~~~l~~~~~~--~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 120 (492)
..+.+++| ++.. ..-|||||||||..+..|.... ...+|+|||+.|++.|.+...+ -.++.+|
T Consensus 37 ~eRaLELL--alp~~~~~~iLDIGCGsGLSg~vL~~~G---h~wiGvDiSpsML~~a~~~e~e----------gdlil~D 101 (270)
T KOG1541|consen 37 AERALELL--ALPGPKSGLILDIGCGSGLSGSVLSDSG---HQWIGVDISPSMLEQAVERELE----------GDLILCD 101 (270)
T ss_pred HHHHHHHh--hCCCCCCcEEEEeccCCCcchheeccCC---ceEEeecCCHHHHHHHHHhhhh----------cCeeeee
Confidence 46777877 6655 5689999999999999999875 7999999999999999974322 3577778
Q ss_pred C-CCCCCCCCcccceeccCcccc
Q psy7834 121 G-RKGYLDEAPYDIIHVGGSIED 142 (492)
Q Consensus 121 ~-~~~~~~~~~~D~i~~~~~~~~ 142 (492)
. +-+|+...+||.+++..+++.
T Consensus 102 MG~GlpfrpGtFDg~ISISAvQW 124 (270)
T KOG1541|consen 102 MGEGLPFRPGTFDGVISISAVQW 124 (270)
T ss_pred cCCCCCCCCCccceEEEeeeeee
Confidence 5 456788999999999777743
No 272
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.88 E-value=8.3e-09 Score=104.05 Aligned_cols=83 Identities=27% Similarity=0.332 Sum_probs=67.5
Q ss_pred HHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCC
Q psy7834 46 VLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY 125 (492)
Q Consensus 46 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 125 (492)
+++.+ .++++.+|||||||+|.++..+++..+ .+|+|+|+|++|++.|+++.+. .++++..+|..++
T Consensus 159 l~~~l--~l~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS~~~l~~A~~~~~~--------l~v~~~~~D~~~l- 225 (383)
T PRK11705 159 ICRKL--QLKPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTISAEQQKLAQERCAG--------LPVEIRLQDYRDL- 225 (383)
T ss_pred HHHHh--CCCCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhcc--------CeEEEEECchhhc-
Confidence 44444 678899999999999999999998764 7999999999999999998742 2578899997654
Q ss_pred CCCCcccceeccCccccc
Q psy7834 126 LDEAPYDIIHVGGSIEDI 143 (492)
Q Consensus 126 ~~~~~~D~i~~~~~~~~l 143 (492)
+++||.|++...++++
T Consensus 226 --~~~fD~Ivs~~~~ehv 241 (383)
T PRK11705 226 --NGQFDRIVSVGMFEHV 241 (383)
T ss_pred --CCCCCEEEEeCchhhC
Confidence 4689999987665443
No 273
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.87 E-value=6.6e-09 Score=99.74 Aligned_cols=82 Identities=17% Similarity=0.133 Sum_probs=72.0
Q ss_pred hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCccc
Q psy7834 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYD 132 (492)
Q Consensus 53 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 132 (492)
.++++.+|||+|||+|..+..+++..+..++|+++|+++.+++.++++++++++ .+++++++|+..++...++||
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-----~~v~~~~~D~~~~~~~~~~fD 142 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-----LNVAVTNFDGRVFGAAVPKFD 142 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-----CcEEEecCCHHHhhhhccCCC
Confidence 678899999999999999999999876557999999999999999999999887 689999999887655556799
Q ss_pred ceeccCc
Q psy7834 133 IIHVGGS 139 (492)
Q Consensus 133 ~i~~~~~ 139 (492)
.|++...
T Consensus 143 ~Vl~D~P 149 (264)
T TIGR00446 143 AILLDAP 149 (264)
T ss_pred EEEEcCC
Confidence 9988543
No 274
>KOG2904|consensus
Probab=98.87 E-value=1.3e-08 Score=93.67 Aligned_cols=117 Identities=21% Similarity=0.256 Sum_probs=87.5
Q ss_pred CCccccccccccCCcccCCccccccchhhhHHHHHHHHHHH-hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCC
Q psy7834 12 WRPYANCITNIGYGAHMQAPFQDNTKFSKFQQAMVLDDLSE-ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHI 90 (492)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~ 90 (492)
...|.+-.+-..++..+.+|++ +.+...+++.+.. .-..+..+||+|||+|..+..+++.. +++.|+|||.|
T Consensus 109 ~~~F~~l~l~~~pgVlIPRpET------EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L-~~~~v~AiD~S 181 (328)
T KOG2904|consen 109 SQPFGDLDLVCKPGVLIPRPET------EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGL-PQCTVTAIDVS 181 (328)
T ss_pred cCccCCceEEecCCeeecCccH------HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcC-CCceEEEEecc
Confidence 5667777777788888999988 3333444444421 22344579999999999999999998 47999999999
Q ss_pred HHHHHHHHHhhhcCCCCccccCceEEEec----CCCC-CCCCCCcccceeccCc
Q psy7834 91 PQLVQRATHNVISGNPEFVKDGRIKFVLG----DGRK-GYLDEAPYDIIHVGGS 139 (492)
Q Consensus 91 ~~~~~~a~~~~~~~~~~~~~~~~v~~~~~----d~~~-~~~~~~~~D~i~~~~~ 139 (492)
+.++..|.+|.+.++++ +++..++- |... .+..++++|++++|-.
T Consensus 182 ~~Ai~La~eN~qr~~l~----g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPP 231 (328)
T KOG2904|consen 182 KAAIKLAKENAQRLKLS----GRIEVIHNIMESDASDEHPLLEGKIDLLVSNPP 231 (328)
T ss_pred HHHHHHHHHHHHHHhhc----CceEEEecccccccccccccccCceeEEecCCC
Confidence 99999999999998885 67777744 3332 2245688999999633
No 275
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.86 E-value=1.5e-08 Score=94.81 Aligned_cols=91 Identities=21% Similarity=0.391 Sum_probs=73.5
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCC
Q psy7834 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 123 (492)
Q Consensus 44 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 123 (492)
..+++.+ ...++.+|||+|||+|.++..+++..+...+++++|+++.+++.++++.. .. .+++++.+|+.+
T Consensus 29 ~~~~~~~--~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~-----~~i~~~~~d~~~ 99 (223)
T TIGR01934 29 RRAVKLI--GVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LP-----LNIEFIQADAEA 99 (223)
T ss_pred HHHHHHh--ccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cC-----CCceEEecchhc
Confidence 4455555 45578999999999999999999987433699999999999999998875 11 578999999998
Q ss_pred CCCCCCcccceeccCccccc
Q psy7834 124 GYLDEAPYDIIHVGGSIEDI 143 (492)
Q Consensus 124 ~~~~~~~~D~i~~~~~~~~l 143 (492)
.+++.++||+|+++..++..
T Consensus 100 ~~~~~~~~D~i~~~~~~~~~ 119 (223)
T TIGR01934 100 LPFEDNSFDAVTIAFGLRNV 119 (223)
T ss_pred CCCCCCcEEEEEEeeeeCCc
Confidence 88777889999987665443
No 276
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.86 E-value=4.6e-09 Score=92.92 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=61.3
Q ss_pred EEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEEecCcchhhHH------HHHHHhccCCeEE
Q psy7834 240 YAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPF------KLMDQLKPGGVMW 313 (492)
Q Consensus 240 ~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~s~~~~~~~~~------~~~~~L~pgG~l~ 313 (492)
+|+|+|++|++.|+++.+.... ....+++++++|+.+.+.++++||+|++..+++++++ ++.++|||||+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~--~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR--SCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc--cCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEE
Confidence 4899999999999877653210 0124799999999888877889999999999988764 8999999999999
Q ss_pred EEe
Q psy7834 314 FTI 316 (492)
Q Consensus 314 ~~~ 316 (492)
+..
T Consensus 79 i~d 81 (160)
T PLN02232 79 ILD 81 (160)
T ss_pred EEE
Confidence 864
No 277
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.85 E-value=1.2e-08 Score=101.04 Aligned_cols=86 Identities=16% Similarity=0.208 Sum_probs=68.2
Q ss_pred HHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCC
Q psy7834 45 MVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKG 124 (492)
Q Consensus 45 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 124 (492)
.+++.+ ......+|||+|||+|.++..+++.. +..+|+++|+|+.|++.|+++++.+++ ..+++.+|+...
T Consensus 187 lLl~~l--~~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l------~~~~~~~D~~~~ 257 (342)
T PRK09489 187 LLLSTL--TPHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGL------EGEVFASNVFSD 257 (342)
T ss_pred HHHHhc--cccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC------CCEEEEcccccc
Confidence 444544 22334589999999999999999985 557999999999999999999988776 357788887653
Q ss_pred CCCCCcccceeccCccc
Q psy7834 125 YLDEAPYDIIHVGGSIE 141 (492)
Q Consensus 125 ~~~~~~~D~i~~~~~~~ 141 (492)
..++||+|+++..++
T Consensus 258 --~~~~fDlIvsNPPFH 272 (342)
T PRK09489 258 --IKGRFDMIISNPPFH 272 (342)
T ss_pred --cCCCccEEEECCCcc
Confidence 257899999977665
No 278
>KOG2899|consensus
Probab=98.84 E-value=7.2e-09 Score=93.64 Aligned_cols=111 Identities=25% Similarity=0.362 Sum_probs=75.1
Q ss_pred HHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCC---------------
Q psy7834 202 LEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEG--------------- 266 (492)
Q Consensus 202 ~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~--------------- 266 (492)
+..|....-.+..+|||||-+|.+|..+|+.+++ ..|+|+||++..++.|+++++.........
T Consensus 49 Lk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~i 127 (288)
T KOG2899|consen 49 LKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPI 127 (288)
T ss_pred hhhccccccCcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccc
Confidence 3344444456789999999999999999999865 469999999999999999876532110000
Q ss_pred ---------------CcEEEEE-------ccCCCCCcCCCCccEEEecCcch------------hhHHHHHHHhccCCeE
Q psy7834 267 ---------------GRVQFVD-------GDGREGHAAEGPYDVIYVGGAVH------------HYPFKLMDQLKPGGVM 312 (492)
Q Consensus 267 ---------------~~v~~~~-------~d~~~~~~~~~~fD~i~s~~~~~------------~~~~~~~~~L~pgG~l 312 (492)
.++.|.. .|+. +.....||+|++-..-. .+...+.++|.|||+|
T Consensus 128 s~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiL 205 (288)
T KOG2899|consen 128 SQRNEADRAFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGIL 205 (288)
T ss_pred cccccccccccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEE
Confidence 0122211 1221 22345799998754322 2234889999999999
Q ss_pred EEE
Q psy7834 313 WFT 315 (492)
Q Consensus 313 ~~~ 315 (492)
++.
T Consensus 206 vvE 208 (288)
T KOG2899|consen 206 VVE 208 (288)
T ss_pred EEc
Confidence 995
No 279
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.84 E-value=6.9e-09 Score=97.57 Aligned_cols=98 Identities=17% Similarity=0.230 Sum_probs=78.9
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCC
Q psy7834 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 123 (492)
Q Consensus 44 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 123 (492)
.+++..+. ...+.++||+|||++|+.++++|+..+++++|+++|++++..+.|++++++.|+. ++|+++.||+.+
T Consensus 68 g~lL~~l~-~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~----~~I~~~~G~a~e 142 (247)
T PLN02589 68 GQFLNMLL-KLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA----HKIDFREGPALP 142 (247)
T ss_pred HHHHHHHH-HHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC----CceEEEeccHHH
Confidence 44444443 4446789999999999999999998877899999999999999999999999985 899999999866
Q ss_pred CCCC-------CCcccceeccCcccccccc
Q psy7834 124 GYLD-------EAPYDIIHVGGSIEDIPEG 146 (492)
Q Consensus 124 ~~~~-------~~~~D~i~~~~~~~~l~~~ 146 (492)
.... .++||+|+........++.
T Consensus 143 ~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y 172 (247)
T PLN02589 143 VLDQMIEDGKYHGTFDFIFVDADKDNYINY 172 (247)
T ss_pred HHHHHHhccccCCcccEEEecCCHHHhHHH
Confidence 4211 2689999998776544433
No 280
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.84 E-value=1.2e-08 Score=94.40 Aligned_cols=90 Identities=20% Similarity=0.133 Sum_probs=66.3
Q ss_pred CCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCC-------CccccCceEEEecCCCCCCCC
Q psy7834 55 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNP-------EFVKDGRIKFVLGDGRKGYLD 127 (492)
Q Consensus 55 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~-------~~~~~~~v~~~~~d~~~~~~~ 127 (492)
.++.+|||+|||.|..+..||+++ .+|+|||+|+.+++.+.+....... ......+++++++|+.+++..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G---~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQG---HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCC---CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 467899999999999999999985 8999999999999986432211000 000014799999999887643
Q ss_pred -CCcccceeccCcccccccch
Q psy7834 128 -EAPYDIIHVGGSIEDIPEGV 147 (492)
Q Consensus 128 -~~~~D~i~~~~~~~~l~~~L 147 (492)
..+||.|+...++.+++...
T Consensus 110 ~~~~fD~i~D~~~~~~l~~~~ 130 (213)
T TIGR03840 110 DLGPVDAVYDRAALIALPEEM 130 (213)
T ss_pred cCCCcCEEEechhhccCCHHH
Confidence 46799999887776665443
No 281
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.83 E-value=1.4e-08 Score=96.94 Aligned_cols=85 Identities=25% Similarity=0.261 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCC
Q psy7834 42 QQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDG 121 (492)
Q Consensus 42 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 121 (492)
+.+++++.+ ...++++|||+|||+|.++..|++.. .+|+++|++++|++.++++... . .+++++++|+
T Consensus 17 i~~~i~~~~--~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~--~-----~~v~v~~~D~ 84 (253)
T TIGR00755 17 VIQKIVEAA--NVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL--Y-----ERLEVIEGDA 84 (253)
T ss_pred HHHHHHHhc--CCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc--C-----CcEEEEECch
Confidence 377888877 67788999999999999999999987 5799999999999999987643 1 6899999999
Q ss_pred CCCCCCCCccc---ceeccCcc
Q psy7834 122 RKGYLDEAPYD---IIHVGGSI 140 (492)
Q Consensus 122 ~~~~~~~~~~D---~i~~~~~~ 140 (492)
.+.+++ .+| .|+++...
T Consensus 85 ~~~~~~--~~d~~~~vvsNlPy 104 (253)
T TIGR00755 85 LKVDLP--DFPKQLKVVSNLPY 104 (253)
T ss_pred hcCChh--HcCCcceEEEcCCh
Confidence 887764 456 67665443
No 282
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.83 E-value=4.8e-08 Score=95.20 Aligned_cols=82 Identities=15% Similarity=0.165 Sum_probs=63.0
Q ss_pred CCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhh-CCCCCCCCcEEEEE-ccCCCCC----cCCC
Q psy7834 211 PGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTY-YPNLMEGGRVQFVD-GDGREGH----AAEG 284 (492)
Q Consensus 211 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~-~~~~~~~~~v~~~~-~d~~~~~----~~~~ 284 (492)
.+.++||||||+|.+...++.+. +..+++|+|+++.+++.|++|+..+ + ...+++++. .|..... ...+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~----l~~~I~~~~~~~~~~i~~~i~~~~~ 188 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPG----LNGAIRLRLQKDSKAIFKGIIHKNE 188 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccC----CcCcEEEEEccchhhhhhcccccCC
Confidence 35799999999999988888775 5679999999999999999999886 3 234677754 3332211 2356
Q ss_pred CccEEEecCcchh
Q psy7834 285 PYDVIYVGGAVHH 297 (492)
Q Consensus 285 ~fD~i~s~~~~~~ 297 (492)
.||+|+||..++.
T Consensus 189 ~fDlivcNPPf~~ 201 (321)
T PRK11727 189 RFDATLCNPPFHA 201 (321)
T ss_pred ceEEEEeCCCCcC
Confidence 8999999987753
No 283
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.82 E-value=1.6e-08 Score=104.11 Aligned_cols=86 Identities=20% Similarity=0.219 Sum_probs=73.8
Q ss_pred HHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCC
Q psy7834 46 VLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY 125 (492)
Q Consensus 46 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 125 (492)
+...+ .+.+|.+|||+|||+|..+..+++..+..++|+++|+++.+++.++++++..|+ .+++++++|+.+.+
T Consensus 244 ~~~~l--~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~-----~~v~~~~~D~~~~~ 316 (434)
T PRK14901 244 VAPLL--DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL-----KSIKILAADSRNLL 316 (434)
T ss_pred HHHHh--CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-----CeEEEEeCChhhcc
Confidence 33445 677899999999999999999999876668999999999999999999999987 67999999998775
Q ss_pred ----CCCCcccceeccC
Q psy7834 126 ----LDEAPYDIIHVGG 138 (492)
Q Consensus 126 ----~~~~~~D~i~~~~ 138 (492)
...++||.|++..
T Consensus 317 ~~~~~~~~~fD~Vl~Da 333 (434)
T PRK14901 317 ELKPQWRGYFDRILLDA 333 (434)
T ss_pred cccccccccCCEEEEeC
Confidence 3356899998743
No 284
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.81 E-value=1.8e-08 Score=85.88 Aligned_cols=123 Identities=22% Similarity=0.361 Sum_probs=92.9
Q ss_pred CCCCCcccCCCCcccChHHHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh
Q psy7834 179 YWDIPQSLGFGSVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHT 258 (492)
Q Consensus 179 y~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~ 258 (492)
|.+.|..+| +...+++.+.++|+..+. ...|.-|||+|.|||-+|..+.++.-+...++++|.|++.+....+...
T Consensus 19 wi~~PrtVG-aI~PsSs~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p- 94 (194)
T COG3963 19 WIDNPRTVG-AILPSSSILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP- 94 (194)
T ss_pred HhcCCceee-eecCCcHHHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC-
Confidence 445566665 334456666666666664 5678899999999999999999988788899999999999988776643
Q ss_pred hCCCCCCCCcEEEEEccCCCCC-----cCCCCccEEEecCcchhhH--------HHHHHHhccCCeEEE
Q psy7834 259 YYPNLMEGGRVQFVDGDGREGH-----AAEGPYDVIYVGGAVHHYP--------FKLMDQLKPGGVMWF 314 (492)
Q Consensus 259 ~~~~~~~~~~v~~~~~d~~~~~-----~~~~~fD~i~s~~~~~~~~--------~~~~~~L~pgG~l~~ 314 (492)
.++++.+|+..+- .....||.|+|...+-.+| +.+...|.+||.++-
T Consensus 95 ---------~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 95 ---------GVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred ---------CccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 4678999986543 2345699999997765544 467788899998774
No 285
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.81 E-value=2.3e-08 Score=98.39 Aligned_cols=90 Identities=17% Similarity=0.172 Sum_probs=73.8
Q ss_pred HHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCC
Q psy7834 45 MVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKG 124 (492)
Q Consensus 45 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 124 (492)
.+++.+ ...++.+|||||||+|.++..+++.. |+.+++++|. +.+++.+++++++.++. ++++++.+|+.+.
T Consensus 140 ~l~~~~--~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~----~rv~~~~~d~~~~ 211 (306)
T TIGR02716 140 LLLEEA--KLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVA----DRMRGIAVDIYKE 211 (306)
T ss_pred HHHHHc--CCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCcc----ceEEEEecCccCC
Confidence 344444 56677899999999999999999997 6689999998 79999999999988874 6899999999875
Q ss_pred CCCCCcccceeccCcccccc
Q psy7834 125 YLDEAPYDIIHVGGSIEDIP 144 (492)
Q Consensus 125 ~~~~~~~D~i~~~~~~~~l~ 144 (492)
+++ .+|+|++...+++..
T Consensus 212 ~~~--~~D~v~~~~~lh~~~ 229 (306)
T TIGR02716 212 SYP--EADAVLFCRILYSAN 229 (306)
T ss_pred CCC--CCCEEEeEhhhhcCC
Confidence 554 469998877766543
No 286
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.81 E-value=2e-08 Score=103.86 Aligned_cols=79 Identities=20% Similarity=0.269 Sum_probs=69.8
Q ss_pred hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCccc
Q psy7834 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYD 132 (492)
Q Consensus 53 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 132 (492)
.+.++++|||+|||+|..+..+++..+..++|+++|+++.|++.+++++++.|+ .+++++++|+...+ ++++||
T Consensus 247 ~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-----~~v~~~~~Da~~~~-~~~~fD 320 (445)
T PRK14904 247 NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-----TIIETIEGDARSFS-PEEQPD 320 (445)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-----CeEEEEeCcccccc-cCCCCC
Confidence 667889999999999999999999875557999999999999999999999887 68999999998765 457899
Q ss_pred ceecc
Q psy7834 133 IIHVG 137 (492)
Q Consensus 133 ~i~~~ 137 (492)
+|++.
T Consensus 321 ~Vl~D 325 (445)
T PRK14904 321 AILLD 325 (445)
T ss_pred EEEEc
Confidence 99874
No 287
>KOG2915|consensus
Probab=98.81 E-value=6.3e-08 Score=89.14 Aligned_cols=125 Identities=23% Similarity=0.272 Sum_probs=99.4
Q ss_pred cCCCCcccChHHHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCC
Q psy7834 186 LGFGSVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLME 265 (492)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~ 265 (492)
.+++.+|..+.=.+.++..|. +.||.+|++-|+|+|.++.++++.++|.|+++.+|..+...+.|++.++..+ -
T Consensus 82 LphRTQI~Yt~Dia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg----i 155 (314)
T KOG2915|consen 82 LPHRTQILYTPDIAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG----I 155 (314)
T ss_pred ccCcceEEecccHHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC----C
Confidence 345566655555677888886 8999999999999999999999999999999999999999999999999876 3
Q ss_pred CCcEEEEEccCCCCCc--CCCCccEEEecCcchhhH-HHHHHHhccCCeEEEEe
Q psy7834 266 GGRVQFVDGDGREGHA--AEGPYDVIYVGGAVHHYP-FKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 266 ~~~v~~~~~d~~~~~~--~~~~fD~i~s~~~~~~~~-~~~~~~L~pgG~l~~~~ 316 (492)
.+++++.+-|.-..-+ ....+|.||....-+|.. ..++..||.+|.-++++
T Consensus 156 ~~~vt~~hrDVc~~GF~~ks~~aDaVFLDlPaPw~AiPha~~~lk~~g~r~csF 209 (314)
T KOG2915|consen 156 GDNVTVTHRDVCGSGFLIKSLKADAVFLDLPAPWEAIPHAAKILKDEGGRLCSF 209 (314)
T ss_pred CcceEEEEeecccCCccccccccceEEEcCCChhhhhhhhHHHhhhcCceEEec
Confidence 5789999888754322 257899999987766654 35666999877544443
No 288
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.80 E-value=1.9e-08 Score=103.08 Aligned_cols=81 Identities=21% Similarity=0.257 Sum_probs=71.7
Q ss_pred hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCC-CCCCcc
Q psy7834 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-LDEAPY 131 (492)
Q Consensus 53 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~ 131 (492)
.+.+|.+|||+|||+|..|..+++..+..++|+++|+++.+++.+++++++.|+ .+++++++|+..++ ...++|
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~-----~~v~~~~~Da~~l~~~~~~~f 308 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL-----SSIEIKIADAERLTEYVQDTF 308 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CeEEEEECchhhhhhhhhccC
Confidence 678899999999999999999999876668999999999999999999999887 67999999998765 335789
Q ss_pred cceeccC
Q psy7834 132 DIIHVGG 138 (492)
Q Consensus 132 D~i~~~~ 138 (492)
|.|++..
T Consensus 309 D~Vl~Da 315 (431)
T PRK14903 309 DRILVDA 315 (431)
T ss_pred CEEEECC
Confidence 9998853
No 289
>PRK14968 putative methyltransferase; Provisional
Probab=98.80 E-value=3.3e-08 Score=89.96 Aligned_cols=86 Identities=22% Similarity=0.361 Sum_probs=68.6
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCc-eEEEecCCC
Q psy7834 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR-IKFVLGDGR 122 (492)
Q Consensus 44 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~-v~~~~~d~~ 122 (492)
..+++.+ ...++++|||+|||+|.++..+++. + .+|+++|+|+++++.+++++..+++. ++ +.++++|..
T Consensus 13 ~~l~~~~--~~~~~~~vLd~G~G~G~~~~~l~~~-~--~~v~~~D~s~~~~~~a~~~~~~~~~~----~~~~~~~~~d~~ 83 (188)
T PRK14968 13 FLLAENA--VDKKGDRVLEVGTGSGIVAIVAAKN-G--KKVVGVDINPYAVECAKCNAKLNNIR----NNGVEVIRSDLF 83 (188)
T ss_pred HHHHHhh--hccCCCEEEEEccccCHHHHHHHhh-c--ceEEEEECCHHHHHHHHHHHHHcCCC----CcceEEEecccc
Confidence 3444555 4467889999999999999999998 3 89999999999999999998777652 22 899999976
Q ss_pred CCCCCCCcccceeccCc
Q psy7834 123 KGYLDEAPYDIIHVGGS 139 (492)
Q Consensus 123 ~~~~~~~~~D~i~~~~~ 139 (492)
+. +..++||+|+++..
T Consensus 84 ~~-~~~~~~d~vi~n~p 99 (188)
T PRK14968 84 EP-FRGDKFDVILFNPP 99 (188)
T ss_pred cc-ccccCceEEEECCC
Confidence 64 34458999998644
No 290
>PTZ00146 fibrillarin; Provisional
Probab=98.80 E-value=1.5e-08 Score=96.64 Aligned_cols=80 Identities=21% Similarity=0.219 Sum_probs=62.7
Q ss_pred hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCC---CCCCC
Q psy7834 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKG---YLDEA 129 (492)
Q Consensus 53 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~~~ 129 (492)
.++++++|||+|||+|+++..+++.+++.++|++||+++.|.+...+...+. .|+.++.+|+... ....+
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-------~NI~~I~~Da~~p~~y~~~~~ 201 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-------PNIVPIIEDARYPQKYRMLVP 201 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-------CCCEEEECCccChhhhhcccC
Confidence 5789999999999999999999999987789999999997665544443221 5789999998642 22345
Q ss_pred cccceeccCc
Q psy7834 130 PYDIIHVGGS 139 (492)
Q Consensus 130 ~~D~i~~~~~ 139 (492)
+||+|++..+
T Consensus 202 ~vDvV~~Dva 211 (293)
T PTZ00146 202 MVDVIFADVA 211 (293)
T ss_pred CCCEEEEeCC
Confidence 7999988664
No 291
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.79 E-value=2.7e-08 Score=89.51 Aligned_cols=94 Identities=24% Similarity=0.212 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcE---------EEEEeCCHHHHHHHHHhhhcCCCCccc
Q psy7834 40 KFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGK---------VIGIEHIPQLVQRATHNVISGNPEFVK 110 (492)
Q Consensus 40 ~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~---------v~~vd~~~~~~~~a~~~~~~~~~~~~~ 110 (492)
..+++.|+.+. ...++..|||-.||+|.+.+..+.... +.. ++|.|+++++++.|++|+...++.
T Consensus 14 ~~lA~~ll~la--~~~~~~~vlDP~CGsGtiliEaa~~~~-~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~--- 87 (179)
T PF01170_consen 14 PTLAAALLNLA--GWRPGDVVLDPFCGSGTILIEAALMGA-NIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE--- 87 (179)
T ss_dssp HHHHHHHHHHT--T--TTS-EEETT-TTSHHHHHHHHHHT-TTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C---
T ss_pred HHHHHHHHHHh--CCCCCCEEeecCCCCCHHHHHHHHHhh-CcccccccccccEEecCCCHHHHHHHHHHHHhcccC---
Confidence 34467777766 788899999999999999999888762 234 899999999999999999999884
Q ss_pred cCceEEEecCCCCCCCCCCcccceeccCcc
Q psy7834 111 DGRIKFVLGDGRKGYLDEAPYDIIHVGGSI 140 (492)
Q Consensus 111 ~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~ 140 (492)
..+.+.+.|+.++++.++++|.|+++-..
T Consensus 88 -~~i~~~~~D~~~l~~~~~~~d~IvtnPPy 116 (179)
T PF01170_consen 88 -DYIDFIQWDARELPLPDGSVDAIVTNPPY 116 (179)
T ss_dssp -GGEEEEE--GGGGGGTTSBSCEEEEE--S
T ss_pred -CceEEEecchhhcccccCCCCEEEECcch
Confidence 67999999999999777899999986544
No 292
>KOG1663|consensus
Probab=98.78 E-value=8.1e-08 Score=86.80 Aligned_cols=103 Identities=22% Similarity=0.361 Sum_probs=85.0
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCc------C
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHA------A 282 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------~ 282 (492)
+-.+.++||||.=||+.++.+|..+++.|+|+++|++++..+.+.+..+.++ ....|+++++++.+... .
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag----v~~KI~~i~g~a~esLd~l~~~~~ 146 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG----VDHKITFIEGPALESLDELLADGE 146 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc----ccceeeeeecchhhhHHHHHhcCC
Confidence 3456899999999999999999999999999999999999999988877765 35689999998764321 3
Q ss_pred CCCccEEEecCcchh---hHHHHHHHhccCCeEEEE
Q psy7834 283 EGPYDVIYVGGAVHH---YPFKLMDQLKPGGVMWFT 315 (492)
Q Consensus 283 ~~~fD~i~s~~~~~~---~~~~~~~~L~pgG~l~~~ 315 (492)
.++||.+|..+--.. .-+++.++||+||.|++.
T Consensus 147 ~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 147 SGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred CCceeEEEEccchHHHHHHHHHHHhhcccccEEEEe
Confidence 578999998865432 234899999999999983
No 293
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=2.9e-08 Score=100.82 Aligned_cols=114 Identities=29% Similarity=0.312 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccC
Q psy7834 197 VHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDG 276 (492)
Q Consensus 197 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~ 276 (492)
++..+++.+. ..+++++||+=||.|.+++.+|++. .+|+|+|+++++++.|++|++.++ ..|++|..+|+
T Consensus 281 l~~~a~~~~~--~~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~-----i~N~~f~~~~a 350 (432)
T COG2265 281 LYETALEWLE--LAGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANG-----IDNVEFIAGDA 350 (432)
T ss_pred HHHHHHHHHh--hcCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcC-----CCcEEEEeCCH
Confidence 3444444443 3467899999999999999999765 369999999999999999999874 56799999998
Q ss_pred CCCCcC---CCCccEEEecCcchhhHH---HHHHHhccCCeEEEEeCCCc
Q psy7834 277 REGHAA---EGPYDVIYVGGAVHHYPF---KLMDQLKPGGVMWFTIGNAE 320 (492)
Q Consensus 277 ~~~~~~---~~~fD~i~s~~~~~~~~~---~~~~~L~pgG~l~~~~~~~~ 320 (492)
++.... ...||.|+.+..-.-+.+ +....++|-.+++++|.|.+
T Consensus 351 e~~~~~~~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p~~IvYVSCNP~T 400 (432)
T COG2265 351 EEFTPAWWEGYKPDVVVVDPPRAGADREVLKQLAKLKPKRIVYVSCNPAT 400 (432)
T ss_pred HHHhhhccccCCCCEEEECCCCCCCCHHHHHHHHhcCCCcEEEEeCCHHH
Confidence 764433 247899999876544443 33445689999999998866
No 294
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.77 E-value=2.1e-08 Score=96.10 Aligned_cols=89 Identities=13% Similarity=0.190 Sum_probs=64.9
Q ss_pred CCCCeEEEEcCcCcH----HHHHHHHHhCC----CcEEEEEeCCHHHHHHHHHhhhc----CCCC------cc-------
Q psy7834 55 TEGKKVLDIGSGNGY----FTALLAWCVGK----TGKVIGIEHIPQLVQRATHNVIS----GNPE------FV------- 109 (492)
Q Consensus 55 ~~~~~vLDiG~G~G~----~~~~la~~~~~----~~~v~~vd~~~~~~~~a~~~~~~----~~~~------~~------- 109 (492)
.++.+|||+|||||. +++.+++..+. +.+|+|+|+|+.|++.|++.... .++. +|
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345799999999996 56666665431 46899999999999999986421 0000 00
Q ss_pred -----ccCceEEEecCCCCCCCCCCcccceeccCccccc
Q psy7834 110 -----KDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDI 143 (492)
Q Consensus 110 -----~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~~l 143 (492)
...+|+|.++|+.+.+++.++||+|+|..++..+
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf 216 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYF 216 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhC
Confidence 0137899999999987777899999997666544
No 295
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.76 E-value=3.7e-08 Score=101.92 Aligned_cols=81 Identities=23% Similarity=0.194 Sum_probs=70.4
Q ss_pred hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCC-CCcc
Q psy7834 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLD-EAPY 131 (492)
Q Consensus 53 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~ 131 (492)
.+.++.+|||+|||+|..+..+++..++.++|+++|+++++++.++++++++|+ .+++++++|+.+.... .++|
T Consensus 247 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~-----~~v~~~~~D~~~~~~~~~~~f 321 (444)
T PRK14902 247 DPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL-----TNIETKALDARKVHEKFAEKF 321 (444)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEeCCcccccchhcccC
Confidence 667889999999999999999999875568999999999999999999999887 5799999999876421 2689
Q ss_pred cceeccC
Q psy7834 132 DIIHVGG 138 (492)
Q Consensus 132 D~i~~~~ 138 (492)
|+|++..
T Consensus 322 D~Vl~D~ 328 (444)
T PRK14902 322 DKILVDA 328 (444)
T ss_pred CEEEEcC
Confidence 9999854
No 296
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.76 E-value=4.4e-08 Score=93.00 Aligned_cols=91 Identities=26% Similarity=0.426 Sum_probs=74.6
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccE
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDV 288 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 288 (492)
+.+..+|+|||+|+|.++..++++. |+.+++.+|. |+.++.+++ . ++++++.+|+.+ +.+. +|+
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~---~--------~rv~~~~gd~f~-~~P~--~D~ 161 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE---A--------DRVEFVPGDFFD-PLPV--ADV 161 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH---T--------TTEEEEES-TTT-CCSS--ESE
T ss_pred ccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc---c--------cccccccccHHh-hhcc--ccc
Confidence 4556799999999999999999997 8899999998 888888887 1 479999999974 3333 999
Q ss_pred EEecCcchhhHH--------HHHHHhccC--CeEEEE
Q psy7834 289 IYVGGAVHHYPF--------KLMDQLKPG--GVMWFT 315 (492)
Q Consensus 289 i~s~~~~~~~~~--------~~~~~L~pg--G~l~~~ 315 (492)
++...++|..++ ++++.|+|| |+|+|.
T Consensus 162 ~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 162 YLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp EEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred eeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 999999998875 788999999 999985
No 297
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.75 E-value=3.2e-08 Score=91.50 Aligned_cols=71 Identities=20% Similarity=0.400 Sum_probs=58.5
Q ss_pred cCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCC--------
Q psy7834 54 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-------- 125 (492)
Q Consensus 54 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-------- 125 (492)
++++.+|||+|||||.++..+++..++.++|+|||+++ | ... ++++++++|+.+..
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~-----~~v~~i~~D~~~~~~~~~i~~~ 112 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI-----VGVDFLQGDFRDELVLKALLER 112 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC-----CCcEEEecCCCChHHHHHHHHH
Confidence 57889999999999999999999986668999999988 2 112 56899999998853
Q ss_pred CCCCcccceeccCcc
Q psy7834 126 LDEAPYDIIHVGGSI 140 (492)
Q Consensus 126 ~~~~~~D~i~~~~~~ 140 (492)
+.+++||+|+++.+.
T Consensus 113 ~~~~~~D~V~S~~~~ 127 (209)
T PRK11188 113 VGDSKVQVVMSDMAP 127 (209)
T ss_pred hCCCCCCEEecCCCC
Confidence 456789999996554
No 298
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.75 E-value=1.4e-07 Score=84.95 Aligned_cols=116 Identities=24% Similarity=0.290 Sum_probs=78.3
Q ss_pred ChHHHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCC--------eEEEEeCCHHHHHHHHHHHHhhCCCCCC
Q psy7834 194 SPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTG--------KVYAVEHIEDLVAQANKSMHTYYPNLME 265 (492)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~--------~v~giD~s~~~l~~a~~~~~~~~~~~~~ 265 (492)
.|.+.+.++.+.. .+++..|||--||+|.+..+.+....... +++|.|+++.+++.|++|+..++ .
T Consensus 13 ~~~lA~~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag----~ 86 (179)
T PF01170_consen 13 RPTLAAALLNLAG--WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG----V 86 (179)
T ss_dssp -HHHHHHHHHHTT----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-----
T ss_pred CHHHHHHHHHHhC--CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc----c
Confidence 4444444444333 57889999999999999998887763322 38999999999999999999875 2
Q ss_pred CCcEEEEEccCCCCCcCCCCccEEEecCcch--------------hhHHHHHHHhccCCeEEEEe
Q psy7834 266 GGRVQFVDGDGREGHAAEGPYDVIYVGGAVH--------------HYPFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 266 ~~~v~~~~~d~~~~~~~~~~fD~i~s~~~~~--------------~~~~~~~~~L~pgG~l~~~~ 316 (492)
...+.+.+.|+.+++...+++|.|+++...- .+.+++.++|++ ..+++..
T Consensus 87 ~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~ 150 (179)
T PF01170_consen 87 EDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT 150 (179)
T ss_dssp CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE
T ss_pred CCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Confidence 3468999999988775678999999996441 222367788888 4444433
No 299
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.74 E-value=2.2e-07 Score=84.33 Aligned_cols=102 Identities=15% Similarity=0.074 Sum_probs=75.0
Q ss_pred CCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCc---CC-CC
Q psy7834 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHA---AE-GP 285 (492)
Q Consensus 210 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~-~~ 285 (492)
-++.+|||++||+|.++..++.++. .+|+++|.++.+++.+++|+..++ ...+++++++|+..... .. ..
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~----~~~~~~~~~~D~~~~l~~~~~~~~~ 121 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLK----SGEQAEVVRNSALRALKFLAKKPTF 121 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhC----CcccEEEEehhHHHHHHHhhccCCC
Confidence 3578999999999999999999862 479999999999999999998864 12468999999844211 12 24
Q ss_pred ccEEEecCcch-hhHH----HH--HHHhccCCeEEEEeC
Q psy7834 286 YDVIYVGGAVH-HYPF----KL--MDQLKPGGVMWFTIG 317 (492)
Q Consensus 286 fD~i~s~~~~~-~~~~----~~--~~~L~pgG~l~~~~~ 317 (492)
||+|+....+. .... .+ ..+|+++|.+++...
T Consensus 122 ~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 122 DNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred ceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 89998876552 1222 22 235788998888643
No 300
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.73 E-value=3.6e-08 Score=96.89 Aligned_cols=109 Identities=20% Similarity=0.211 Sum_probs=75.6
Q ss_pred CCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCC-----CCCCCcEEEEEccCCCC-----C
Q psy7834 211 PGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPN-----LMEGGRVQFVDGDGREG-----H 280 (492)
Q Consensus 211 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~-----~~~~~~v~~~~~d~~~~-----~ 280 (492)
++.+|||+|||-|....-.... .-.+++|+|+|++.|+.|++|....... ....-...|+.+|.... .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 7889999999999888777664 4568999999999999999998321100 00012467888887532 1
Q ss_pred cC-CCCccEEEecCcchhhH----------HHHHHHhccCCeEEEEeCCCcc
Q psy7834 281 AA-EGPYDVIYVGGAVHHYP----------FKLMDQLKPGGVMWFTIGNAEE 321 (492)
Q Consensus 281 ~~-~~~fD~i~s~~~~~~~~----------~~~~~~L~pgG~l~~~~~~~~~ 321 (492)
.+ ..+||+|-+..++|..- .++.+.|+|||.++.+++....
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~ 191 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDE 191 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHH
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHH
Confidence 12 25899999999888654 3788999999999999877653
No 301
>KOG3420|consensus
Probab=98.73 E-value=3.7e-08 Score=81.81 Aligned_cols=99 Identities=14% Similarity=0.240 Sum_probs=78.4
Q ss_pred CCcccChHHHHHHHHHHHhcc--CCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCC
Q psy7834 189 GSVMSSPKVHAQALEILKDYL--KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEG 266 (492)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~~~~--~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~ 266 (492)
.+..++|.+.+-++..+..-. -.|.+++|+|||+|-++...+. .....|+|+|++|++++.+++|+....
T Consensus 24 EQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm--~~~e~vlGfDIdpeALEIf~rNaeEfE------ 95 (185)
T KOG3420|consen 24 EQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSM--PKNESVLGFDIDPEALEIFTRNAEEFE------ 95 (185)
T ss_pred hhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhc--CCCceEEeeecCHHHHHHHhhchHHhh------
Confidence 456678888888887776422 3589999999999999955543 245679999999999999999988742
Q ss_pred CcEEEEEccCCCCCcCCCCccEEEecCcc
Q psy7834 267 GRVQFVDGDGREGHAAEGPYDVIYVGGAV 295 (492)
Q Consensus 267 ~~v~~~~~d~~~~~~~~~~fD~i~s~~~~ 295 (492)
-+++++++|.....+..+.||.++.|..+
T Consensus 96 vqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 96 VQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred hhhheeeeeccchhccCCeEeeEEecCCC
Confidence 36799999998777777889999988654
No 302
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.72 E-value=7.4e-08 Score=87.57 Aligned_cols=101 Identities=27% Similarity=0.408 Sum_probs=74.0
Q ss_pred hccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCc
Q psy7834 207 DYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPY 286 (492)
Q Consensus 207 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 286 (492)
..+.+|.+|+|+.||-|.+++.+|+.. +..+|+++|++|.+++..++|++.++ ...++..+++|..+... .+.|
T Consensus 97 ~~v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNk----v~~~i~~~~~D~~~~~~-~~~~ 170 (200)
T PF02475_consen 97 NLVKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNK----VENRIEVINGDAREFLP-EGKF 170 (200)
T ss_dssp TC--TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-----TTTEEEEES-GGG----TT-E
T ss_pred hcCCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcC----CCCeEEEEcCCHHHhcC-cccc
Confidence 346789999999999999999999864 55689999999999999999999875 23578999999977554 7889
Q ss_pred cEEEecCcc--hhhHHHHHHHhccCCeEE
Q psy7834 287 DVIYVGGAV--HHYPFKLMDQLKPGGVMW 313 (492)
Q Consensus 287 D~i~s~~~~--~~~~~~~~~~L~pgG~l~ 313 (492)
|.|+.+..- .++.+.+.+.+++||.+-
T Consensus 171 drvim~lp~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 171 DRVIMNLPESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEEEE--TSSGGGGHHHHHHHEEEEEEEE
T ss_pred CEEEECChHHHHHHHHHHHHHhcCCcEEE
Confidence 999988642 355667889999998874
No 303
>KOG3191|consensus
Probab=98.71 E-value=8.9e-08 Score=82.92 Aligned_cols=98 Identities=20% Similarity=0.297 Sum_probs=78.8
Q ss_pred CCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEEe
Q psy7834 212 GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYV 291 (492)
Q Consensus 212 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~s 291 (492)
...+||||||+|..+..|++..+++....++|++|.+++..++.++.++ .+++.++.|+...... ++.|+++.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~------~~~~~V~tdl~~~l~~-~~VDvLvf 116 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR------VHIDVVRTDLLSGLRN-ESVDVLVF 116 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC------CccceeehhHHhhhcc-CCccEEEE
Confidence 5789999999999999999998899999999999999999988887753 3578899998765544 89999998
Q ss_pred cCcc----------hhh-----------------HHHHHHHhccCCeEEEEe
Q psy7834 292 GGAV----------HHY-----------------PFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 292 ~~~~----------~~~-----------------~~~~~~~L~pgG~l~~~~ 316 (492)
|... +++ .+.+-..|.|.|.+++..
T Consensus 117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~ 168 (209)
T KOG3191|consen 117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA 168 (209)
T ss_pred CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee
Confidence 8532 111 124457789999999854
No 304
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.71 E-value=6.3e-08 Score=89.72 Aligned_cols=100 Identities=29% Similarity=0.331 Sum_probs=83.7
Q ss_pred CceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCC---CcCCCCccEE
Q psy7834 213 AKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREG---HAAEGPYDVI 289 (492)
Q Consensus 213 ~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~fD~i 289 (492)
..+||||||.|.+...+|++. |...++|||+....+..|.+.+.+.+ .+|+.++++|+... ..++++.|-|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~-----l~Nlri~~~DA~~~l~~~~~~~sl~~I 123 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELG-----LKNLRLLCGDAVEVLDYLIPDGSLDKI 123 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcC-----CCcEEEEcCCHHHHHHhcCCCCCeeEE
Confidence 489999999999999999997 88899999999999999999988864 34899999998653 3456699999
Q ss_pred EecCcchhhH--------------HHHHHHhccCCeEEEEeCC
Q psy7834 290 YVGGAVHHYP--------------FKLMDQLKPGGVMWFTIGN 318 (492)
Q Consensus 290 ~s~~~~~~~~--------------~~~~~~L~pgG~l~~~~~~ 318 (492)
+.+..-+|-. +.+.+.|+|||.|.+.+..
T Consensus 124 ~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 124 YINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 9887654432 3788999999999997643
No 305
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.70 E-value=7.5e-08 Score=99.01 Aligned_cols=86 Identities=22% Similarity=0.294 Sum_probs=71.1
Q ss_pred HHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCC
Q psy7834 45 MVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKG 124 (492)
Q Consensus 45 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 124 (492)
.+...+ .+.++.+|||+|||+|..+..+++..+ .++|+++|+++.+++.+++++++.|+ +++++++|+.+.
T Consensus 235 ~~~~~l--~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~------~~~~~~~D~~~~ 305 (427)
T PRK10901 235 LAATLL--APQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGL------KATVIVGDARDP 305 (427)
T ss_pred HHHHHc--CCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEcCcccc
Confidence 344455 678899999999999999999999873 37999999999999999999988876 378999999875
Q ss_pred C--CCCCcccceeccCc
Q psy7834 125 Y--LDEAPYDIIHVGGS 139 (492)
Q Consensus 125 ~--~~~~~~D~i~~~~~ 139 (492)
+ ...++||.|+++..
T Consensus 306 ~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 306 AQWWDGQPFDRILLDAP 322 (427)
T ss_pred hhhcccCCCCEEEECCC
Confidence 4 23568999987543
No 306
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.69 E-value=2e-07 Score=95.78 Aligned_cols=104 Identities=21% Similarity=0.255 Sum_probs=83.1
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCC-cCCCCcc
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGH-AAEGPYD 287 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD 287 (492)
.++|.+|||++||+|.-|..+|...+..+.|++.|+++..++..++|+.+.| ..++.+...|..... ...+.||
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G-----~~nv~v~~~D~~~~~~~~~~~fD 185 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG-----VSNVALTHFDGRVFGAALPETFD 185 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEeCchhhhhhhchhhcC
Confidence 5789999999999999999999998777899999999999999999999864 567888888876432 2235799
Q ss_pred EEEecCcc------hhh----------------------HHHHHHHhccCCeEEEEeC
Q psy7834 288 VIYVGGAV------HHY----------------------PFKLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 288 ~i~s~~~~------~~~----------------------~~~~~~~L~pgG~l~~~~~ 317 (492)
.|+..... ..- .++..+.|||||+|+.++-
T Consensus 186 ~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 186 AILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred eEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 99965422 111 1256789999999988754
No 307
>KOG1499|consensus
Probab=98.68 E-value=3.5e-08 Score=94.77 Aligned_cols=78 Identities=27% Similarity=0.257 Sum_probs=68.9
Q ss_pred hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCccc
Q psy7834 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYD 132 (492)
Q Consensus 53 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 132 (492)
.+..+++|||+|||||.++.+-|+.+. .+|+|||.|.-+ +.|++.+..++++ ..|++++|.++++.+|.+++|
T Consensus 57 ~lf~dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~ia-~~a~~iv~~N~~~----~ii~vi~gkvEdi~LP~eKVD 129 (346)
T KOG1499|consen 57 HLFKDKTVLDVGCGTGILSMFAAKAGA--RKVYAVEASSIA-DFARKIVKDNGLE----DVITVIKGKVEDIELPVEKVD 129 (346)
T ss_pred hhcCCCEEEEcCCCccHHHHHHHHhCc--ceEEEEechHHH-HHHHHHHHhcCcc----ceEEEeecceEEEecCcccee
Confidence 557899999999999999999999963 799999986555 9999999999985 669999999999877789999
Q ss_pred ceecc
Q psy7834 133 IIHVG 137 (492)
Q Consensus 133 ~i~~~ 137 (492)
+|++-
T Consensus 130 iIvSE 134 (346)
T KOG1499|consen 130 IIVSE 134 (346)
T ss_pred EEeeh
Confidence 99983
No 308
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.68 E-value=6.3e-08 Score=89.91 Aligned_cols=87 Identities=22% Similarity=0.136 Sum_probs=65.9
Q ss_pred cCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCc----------cccCceEEEecCCCC
Q psy7834 54 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEF----------VKDGRIKFVLGDGRK 123 (492)
Q Consensus 54 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~----------~~~~~v~~~~~d~~~ 123 (492)
..++.+|||+|||.|..+..||+++ .+|+|||+|+.+++.+... +++.. ....+|++.++|+.+
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G---~~V~avD~s~~Ai~~~~~~---~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~ 108 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQG---HEVLGVELSELAVEQFFAE---NGLTPQTRQSGEFEHYQAGEITIYCGDFFA 108 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCC---CeEEEEccCHHHHHHHHHH---cCCCccccccccccccccCceEEEECcccC
Confidence 4467899999999999999999985 8999999999999987432 11100 012579999999998
Q ss_pred CCCC-CCcccceeccCcccccccc
Q psy7834 124 GYLD-EAPYDIIHVGGSIEDIPEG 146 (492)
Q Consensus 124 ~~~~-~~~~D~i~~~~~~~~l~~~ 146 (492)
+... ...||.|+...++.+++..
T Consensus 109 l~~~~~~~fd~v~D~~~~~~l~~~ 132 (218)
T PRK13255 109 LTAADLADVDAVYDRAALIALPEE 132 (218)
T ss_pred CCcccCCCeeEEEehHhHhhCCHH
Confidence 8643 3579999987776665544
No 309
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.67 E-value=1.7e-07 Score=94.19 Aligned_cols=99 Identities=21% Similarity=0.162 Sum_probs=77.9
Q ss_pred CCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEEe
Q psy7834 212 GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYV 291 (492)
Q Consensus 212 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~s 291 (492)
+.+|||++||+|.+++.++...+ ..+|+++|+++.+++.+++|++.++ ..++++.++|+.......+.||+|+.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~-----~~~~~v~~~Da~~~l~~~~~fD~V~l 131 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNG-----LENEKVFNKDANALLHEERKFDVVDI 131 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhC-----CCceEEEhhhHHHHHhhcCCCCEEEE
Confidence 46899999999999999998763 4589999999999999999998864 34677999998653322457999998
Q ss_pred cCc-c-hhhHHHHHHHhccCCeEEEEe
Q psy7834 292 GGA-V-HHYPFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 292 ~~~-~-~~~~~~~~~~L~pgG~l~~~~ 316 (492)
+.. . ..+.+...+.+++||.++++.
T Consensus 132 DP~Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 132 DPFGSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEEe
Confidence 752 1 223345567789999999983
No 310
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.66 E-value=1.1e-07 Score=97.89 Aligned_cols=86 Identities=17% Similarity=0.148 Sum_probs=70.3
Q ss_pred HHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCC
Q psy7834 45 MVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKG 124 (492)
Q Consensus 45 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 124 (492)
.+..++ .+.++.+|||+|||+|..+..+++..+ .++|+|+|+++++++.+++++++.|+. .++.+.++|....
T Consensus 229 ~~~~~L--~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~----~~v~~~~~d~~~~ 301 (426)
T TIGR00563 229 WVATWL--APQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLT----IKAETKDGDGRGP 301 (426)
T ss_pred HHHHHh--CCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCC----eEEEEeccccccc
Confidence 444455 778899999999999999999999874 589999999999999999999998872 2456688887654
Q ss_pred CC--CCCcccceecc
Q psy7834 125 YL--DEAPYDIIHVG 137 (492)
Q Consensus 125 ~~--~~~~~D~i~~~ 137 (492)
+. ..++||.|++.
T Consensus 302 ~~~~~~~~fD~VllD 316 (426)
T TIGR00563 302 SQWAENEQFDRILLD 316 (426)
T ss_pred cccccccccCEEEEc
Confidence 43 45789999874
No 311
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.66 E-value=9.6e-08 Score=90.45 Aligned_cols=95 Identities=20% Similarity=0.162 Sum_probs=68.3
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCC
Q psy7834 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 123 (492)
Q Consensus 44 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 123 (492)
.++...+ ..-.|++|||||||+|+++..++.... ..|+|+|-+....-..+....-.+.. .++.++..-++.
T Consensus 105 ~rl~p~l--~~L~gk~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF~~i~~~lg~~----~~~~~lplgvE~ 176 (315)
T PF08003_consen 105 DRLLPHL--PDLKGKRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQFEAIKHFLGQD----PPVFELPLGVED 176 (315)
T ss_pred HHHHhhh--CCcCCCEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHHHHHHHHHhCCC----ccEEEcCcchhh
Confidence 4566666 455899999999999999999999853 68999999987654433222112211 344555466777
Q ss_pred CCCCCCcccceeccCcccccccch
Q psy7834 124 GYLDEAPYDIIHVGGSIEDIPEGV 147 (492)
Q Consensus 124 ~~~~~~~~D~i~~~~~~~~l~~~L 147 (492)
++. .++||+|++.+++.|..+.+
T Consensus 177 Lp~-~~~FDtVF~MGVLYHrr~Pl 199 (315)
T PF08003_consen 177 LPN-LGAFDTVFSMGVLYHRRSPL 199 (315)
T ss_pred ccc-cCCcCEEEEeeehhccCCHH
Confidence 776 78999999999998766654
No 312
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.65 E-value=7.1e-08 Score=85.22 Aligned_cols=75 Identities=31% Similarity=0.520 Sum_probs=58.7
Q ss_pred cCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccc
Q psy7834 54 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDI 133 (492)
Q Consensus 54 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 133 (492)
..++++|||+|||+|.++..+++.. .+++|+|+++.+++. . ++....-+....+.++++||+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~~~g~D~~~~~~~~------~---------~~~~~~~~~~~~~~~~~~fD~ 81 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRG---FEVTGVDISPQMIEK------R---------NVVFDNFDAQDPPFPDGSFDL 81 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTT---SEEEEEESSHHHHHH------T---------TSEEEEEECHTHHCHSSSEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhC---CEEEEEECCHHHHhh------h---------hhhhhhhhhhhhhccccchhh
Confidence 5788999999999999999998774 699999999999988 1 122333333344456789999
Q ss_pred eeccCcccccccc
Q psy7834 134 IHVGGSIEDIPEG 146 (492)
Q Consensus 134 i~~~~~~~~l~~~ 146 (492)
|+++.+++++++.
T Consensus 82 i~~~~~l~~~~d~ 94 (161)
T PF13489_consen 82 IICNDVLEHLPDP 94 (161)
T ss_dssp EEEESSGGGSSHH
T ss_pred HhhHHHHhhcccH
Confidence 9999999987753
No 313
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.65 E-value=5.9e-08 Score=97.49 Aligned_cols=102 Identities=18% Similarity=0.160 Sum_probs=83.5
Q ss_pred cCCccccccchhhhHHHHHHHHHHHhcC-CCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCC
Q psy7834 28 MQAPFQDNTKFSKFQQAMVLDDLSEELT-EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNP 106 (492)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~ 106 (492)
..-|+++|.++++.+...+++.+ ... ++.+|||++||+|.+++.++...+ ..+|+++|+++++++.+++|++.+++
T Consensus 30 ~~vFyqp~~~~nrdl~~~v~~~~--~~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~ 106 (382)
T PRK04338 30 APVFYNPRMELNRDISVLVLRAF--GPKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGL 106 (382)
T ss_pred CCeeeCccccchhhHHHHHHHHH--HhhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC
Confidence 45678888888988888888877 322 346899999999999999998763 25899999999999999999999887
Q ss_pred CccccCceEEEecCCCCCCCCCCcccceecc
Q psy7834 107 EFVKDGRIKFVLGDGRKGYLDEAPYDIIHVG 137 (492)
Q Consensus 107 ~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~ 137 (492)
.++++.++|+..+....+.||+|++.
T Consensus 107 -----~~~~v~~~Da~~~l~~~~~fD~V~lD 132 (382)
T PRK04338 107 -----ENEKVFNKDANALLHEERKFDVVDID 132 (382)
T ss_pred -----CceEEEhhhHHHHHhhcCCCCEEEEC
Confidence 67889999987653214679999884
No 314
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.65 E-value=1.3e-07 Score=94.11 Aligned_cols=108 Identities=19% Similarity=0.198 Sum_probs=83.3
Q ss_pred HHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCc--
Q psy7834 204 ILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHA-- 281 (492)
Q Consensus 204 ~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-- 281 (492)
.+..... |++|||+-|=||.++...|..+ ..+|++||+|...++.|++|+.-|+. ...++.|+++|+.+...
T Consensus 211 ~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gG--A~~vt~VD~S~~al~~a~~N~~LNg~---~~~~~~~i~~Dvf~~l~~~ 284 (393)
T COG1092 211 ALGELAA-GKRVLNLFSYTGGFSVHAALGG--ASEVTSVDLSKRALEWARENAELNGL---DGDRHRFIVGDVFKWLRKA 284 (393)
T ss_pred HHhhhcc-CCeEEEecccCcHHHHHHHhcC--CCceEEEeccHHHHHHHHHHHHhcCC---CccceeeehhhHHHHHHHH
Confidence 3333345 9999999999999999998764 34799999999999999999998762 34568999999875432
Q ss_pred --CCCCccEEEecCcc---------------hhhHHHHHHHhccCCeEEEEeC
Q psy7834 282 --AEGPYDVIYVGGAV---------------HHYPFKLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 282 --~~~~fD~i~s~~~~---------------~~~~~~~~~~L~pgG~l~~~~~ 317 (492)
...+||+|+....- ..+...+.++|+|||+++++..
T Consensus 285 ~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 285 ERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred HhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 23489999977421 1222478899999999998653
No 315
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=1.3e-07 Score=88.55 Aligned_cols=89 Identities=19% Similarity=0.176 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEec
Q psy7834 40 KFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLG 119 (492)
Q Consensus 40 ~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~ 119 (492)
..+.+++++.+ .+.+++.|||||+|.|.+|..|++.. .+|++||+++.+++..++..... +|++.+++
T Consensus 16 ~~v~~kIv~~a--~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~~-------~n~~vi~~ 83 (259)
T COG0030 16 KNVIDKIVEAA--NISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFAPY-------DNLTVING 83 (259)
T ss_pred HHHHHHHHHhc--CCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcccc-------cceEEEeC
Confidence 34478888877 78889999999999999999999997 78999999999999999887532 78999999
Q ss_pred CCCCCCCCCC-cccceeccCcc
Q psy7834 120 DGRKGYLDEA-PYDIIHVGGSI 140 (492)
Q Consensus 120 d~~~~~~~~~-~~D~i~~~~~~ 140 (492)
|+....++.- .++.|+++...
T Consensus 84 DaLk~d~~~l~~~~~vVaNlPY 105 (259)
T COG0030 84 DALKFDFPSLAQPYKVVANLPY 105 (259)
T ss_pred chhcCcchhhcCCCEEEEcCCC
Confidence 9998877643 57788876544
No 316
>KOG4300|consensus
Probab=98.65 E-value=3.3e-08 Score=87.31 Aligned_cols=79 Identities=20% Similarity=0.376 Sum_probs=66.3
Q ss_pred CeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceE-EEecCCCCCC-CCCCccccee
Q psy7834 58 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIK-FVLGDGRKGY-LDEAPYDIIH 135 (492)
Q Consensus 58 ~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~-~~~~d~~~~~-~~~~~~D~i~ 135 (492)
..||+||||||..=..+-.. |..+|+++|-++.|-+.|.+.++++.. .++. |+.+++++++ +++.+||.|+
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k~-----~~~~~fvva~ge~l~~l~d~s~DtVV 150 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKKP-----LQVERFVVADGENLPQLADGSYDTVV 150 (252)
T ss_pred cceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhccC-----cceEEEEeechhcCcccccCCeeeEE
Confidence 35899999999987666543 458999999999999999999888754 5777 9999999998 6899999999
Q ss_pred ccCccccc
Q psy7834 136 VGGSIEDI 143 (492)
Q Consensus 136 ~~~~~~~l 143 (492)
++..+-..
T Consensus 151 ~TlvLCSv 158 (252)
T KOG4300|consen 151 CTLVLCSV 158 (252)
T ss_pred EEEEEecc
Confidence 98776533
No 317
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.65 E-value=8.6e-08 Score=90.52 Aligned_cols=87 Identities=18% Similarity=0.281 Sum_probs=67.7
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCC
Q psy7834 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 123 (492)
Q Consensus 44 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 123 (492)
+.+...+ ...++.+|||+|||+|.++..+++.. .+++++|+++++++.|+++....+ .+++++.+|...
T Consensus 38 ~~l~~~~--~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~------~~~~~~~~~~~~ 106 (233)
T PRK05134 38 NYIREHA--GGLFGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESG------LKIDYRQTTAEE 106 (233)
T ss_pred HHHHHhc--cCCCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcC------CceEEEecCHHH
Confidence 3444443 35578899999999999999998874 789999999999999999876654 357888888876
Q ss_pred CC-CCCCcccceeccCccc
Q psy7834 124 GY-LDEAPYDIIHVGGSIE 141 (492)
Q Consensus 124 ~~-~~~~~~D~i~~~~~~~ 141 (492)
.+ ...++||+|++...++
T Consensus 107 ~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 107 LAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred hhhhcCCCccEEEEhhHhh
Confidence 64 2357899998865443
No 318
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.65 E-value=8e-08 Score=90.10 Aligned_cols=78 Identities=21% Similarity=0.269 Sum_probs=65.0
Q ss_pred CCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCC-CCcccce
Q psy7834 56 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLD-EAPYDII 134 (492)
Q Consensus 56 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D~i 134 (492)
.+.+|||+|||+|.++..+++.. .+++++|+++.+++.++++....+. .++++.++|+.+.+.. .++||+|
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~D~i 116 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPL-----LKIEYRCTSVEDLAEKGAKSFDVV 116 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCC-----CceEEEeCCHHHhhcCCCCCccEE
Confidence 47899999999999999998864 6799999999999999998876554 3689999998877644 3789999
Q ss_pred eccCccc
Q psy7834 135 HVGGSIE 141 (492)
Q Consensus 135 ~~~~~~~ 141 (492)
+++..++
T Consensus 117 ~~~~~l~ 123 (224)
T TIGR01983 117 TCMEVLE 123 (224)
T ss_pred EehhHHH
Confidence 9865554
No 319
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.64 E-value=1.7e-07 Score=84.44 Aligned_cols=111 Identities=23% Similarity=0.332 Sum_probs=80.3
Q ss_pred HHHHHHHHhccCCCCc-eEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcE-EEEEccC
Q psy7834 199 AQALEILKDYLKPGAK-VLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRV-QFVDGDG 276 (492)
Q Consensus 199 ~~~~~~l~~~~~~~~~-vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v-~~~~~d~ 276 (492)
..+++.|...+++..+ |||||||||..+..+|+.+ |.-+-.-.|.++..+..-++.....+. +|+ .-+..|+
T Consensus 12 ~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~-----~Nv~~P~~lDv 85 (204)
T PF06080_consen 12 DPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGL-----PNVRPPLALDV 85 (204)
T ss_pred hHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCC-----cccCCCeEeec
Confidence 3456666666666665 9999999999999999998 777788889999987666666655431 222 1233444
Q ss_pred CCC-C--c-----CCCCccEEEecCcchhhHH--------HHHHHhccCCeEEEE
Q psy7834 277 REG-H--A-----AEGPYDVIYVGGAVHHYPF--------KLMDQLKPGGVMWFT 315 (492)
Q Consensus 277 ~~~-~--~-----~~~~fD~i~s~~~~~~~~~--------~~~~~L~pgG~l~~~ 315 (492)
... + . ..++||+|++..++|-++- ...++|+|||.|++.
T Consensus 86 ~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 86 SAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred CCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 332 1 1 2458999999998886653 667899999999985
No 320
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.64 E-value=1.1e-08 Score=104.59 Aligned_cols=80 Identities=33% Similarity=0.424 Sum_probs=56.7
Q ss_pred CCeEEEEecCccHHHHHHHH---HhCCCceEEEEeCCHHHHHHHHHhhhhhcCCCCCCceeeeehhhhHHHHHHHhhccc
Q psy7834 396 GAKVLDIGSGSGYLTACMAH---MVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFTEMAEKVMQLRVHMMSF 472 (492)
Q Consensus 396 g~~vld~g~g~G~~~~~~a~---~~g~~~~v~a~d~~~~~~~~a~~~l~~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~~ 472 (492)
+..|+|+|||+|.|....++ ..+...+|+|+|.++......+.+ |..++..++|+++.+||+++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~-------------v~~n~w~~~V~vi~~d~r~v 253 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKR-------------VNANGWGDKVTVIHGDMREV 253 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHH-------------HHHTTTTTTEEEEES-TTTS
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHH-------------HHhcCCCCeEEEEeCcccCC
Confidence 45689999999987655433 234567999999998666555565 33445667889999999999
Q ss_pred ccCCCeEEEEeccccc
Q psy7834 473 TLEEQSIIILSSFMGR 488 (492)
Q Consensus 473 ~~~~~~~~i~~~~~~~ 488 (492)
..|+++|+|||||||.
T Consensus 254 ~lpekvDIIVSElLGs 269 (448)
T PF05185_consen 254 ELPEKVDIIVSELLGS 269 (448)
T ss_dssp CHSS-EEEEEE---BT
T ss_pred CCCCceeEEEEeccCC
Confidence 9999999999999994
No 321
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.64 E-value=6.5e-08 Score=97.70 Aligned_cols=79 Identities=22% Similarity=0.208 Sum_probs=64.0
Q ss_pred cCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCC----CCC
Q psy7834 54 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL----DEA 129 (492)
Q Consensus 54 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~ 129 (492)
..++++|||+|||||.+++..+... ..+|+++|+|+.+++.|++|++.+++. ..+++++++|+.+... ..+
T Consensus 218 ~~~g~rVLDlfsgtG~~~l~aa~~g--a~~V~~VD~s~~al~~a~~N~~~Ngl~---~~~v~~i~~D~~~~l~~~~~~~~ 292 (396)
T PRK15128 218 YVENKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLD---LSKAEFVRDDVFKLLRTYRDRGE 292 (396)
T ss_pred hcCCCeEEEeccCCCHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCC---CCcEEEEEccHHHHHHHHHhcCC
Confidence 3468999999999999998766542 259999999999999999999998872 1379999999977531 245
Q ss_pred cccceecc
Q psy7834 130 PYDIIHVG 137 (492)
Q Consensus 130 ~~D~i~~~ 137 (492)
+||+|+++
T Consensus 293 ~fDlVilD 300 (396)
T PRK15128 293 KFDVIVMD 300 (396)
T ss_pred CCCEEEEC
Confidence 89999874
No 322
>KOG0820|consensus
Probab=98.63 E-value=1.7e-07 Score=86.45 Aligned_cols=88 Identities=23% Similarity=0.311 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCC
Q psy7834 43 QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR 122 (492)
Q Consensus 43 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 122 (492)
...+++.. ++++++.||++|.|||.+|..|.+.. .+|+|+|+++.|+....++.+-...+ .+.+.++||..
T Consensus 47 ~~~I~~ka--~~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~----~kLqV~~gD~l 117 (315)
T KOG0820|consen 47 IDQIVEKA--DLKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKS----GKLQVLHGDFL 117 (315)
T ss_pred HHHHHhcc--CCCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCcc----ceeeEEecccc
Confidence 45566655 89999999999999999999999997 89999999999999999988665443 67999999987
Q ss_pred CCCCCCCcccceeccCccc
Q psy7834 123 KGYLDEAPYDIIHVGGSIE 141 (492)
Q Consensus 123 ~~~~~~~~~D~i~~~~~~~ 141 (492)
..+. ..||.++++...+
T Consensus 118 K~d~--P~fd~cVsNlPyq 134 (315)
T KOG0820|consen 118 KTDL--PRFDGCVSNLPYQ 134 (315)
T ss_pred cCCC--cccceeeccCCcc
Confidence 7654 3789999876553
No 323
>PRK04457 spermidine synthase; Provisional
Probab=98.62 E-value=1.3e-07 Score=90.48 Aligned_cols=79 Identities=19% Similarity=0.294 Sum_probs=64.0
Q ss_pred cCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCC-CCCCccc
Q psy7834 54 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-LDEAPYD 132 (492)
Q Consensus 54 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D 132 (492)
..++++|||||||+|.++..+++.. +..+|+++|+++++++.|++++...+. .++++++.+|+.+.. ...++||
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~----~~rv~v~~~Da~~~l~~~~~~yD 138 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPEN----GERFEVIEADGAEYIAVHRHSTD 138 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCC----CCceEEEECCHHHHHHhCCCCCC
Confidence 3456899999999999999999986 568999999999999999998765432 168999999986542 2236899
Q ss_pred ceecc
Q psy7834 133 IIHVG 137 (492)
Q Consensus 133 ~i~~~ 137 (492)
+|++.
T Consensus 139 ~I~~D 143 (262)
T PRK04457 139 VILVD 143 (262)
T ss_pred EEEEe
Confidence 99873
No 324
>PRK04148 hypothetical protein; Provisional
Probab=98.61 E-value=1.5e-07 Score=79.09 Aligned_cols=77 Identities=18% Similarity=0.114 Sum_probs=62.8
Q ss_pred CCCCeEEEEcCcCcH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCC-CCccc
Q psy7834 55 TEGKKVLDIGSGNGY-FTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLD-EAPYD 132 (492)
Q Consensus 55 ~~~~~vLDiG~G~G~-~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D 132 (492)
.++.++||||||+|. ++..|++.. ..|+++|+++..++.|+++ .++++++|+++-.+. -+.+|
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~G---~~ViaIDi~~~aV~~a~~~------------~~~~v~dDlf~p~~~~y~~a~ 79 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKESG---FDVIVIDINEKAVEKAKKL------------GLNAFVDDLFNPNLEIYKNAK 79 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHCC---CEEEEEECCHHHHHHHHHh------------CCeEEECcCCCCCHHHHhcCC
Confidence 356789999999997 888999774 7999999999999988764 358999999886654 35699
Q ss_pred ceeccCcccccccc
Q psy7834 133 IIHVGGSIEDIPEG 146 (492)
Q Consensus 133 ~i~~~~~~~~l~~~ 146 (492)
+|++.....++.+.
T Consensus 80 liysirpp~el~~~ 93 (134)
T PRK04148 80 LIYSIRPPRDLQPF 93 (134)
T ss_pred EEEEeCCCHHHHHH
Confidence 99998777666555
No 325
>PLN02823 spermine synthase
Probab=98.60 E-value=3.3e-07 Score=90.25 Aligned_cols=106 Identities=19% Similarity=0.232 Sum_probs=79.7
Q ss_pred CCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCC-cCCCCccE
Q psy7834 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGH-AAEGPYDV 288 (492)
Q Consensus 210 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~ 288 (492)
+...+||.||+|.|..+..+.+.. +..+|+.+|+++++++.|++.+...+.. ...++++++.+|+.... ...++||+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~-~~dprv~v~~~Da~~~L~~~~~~yDv 179 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREA-FCDKRLELIINDARAELEKRDEKFDV 179 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhccccccc-ccCCceEEEEChhHHHHhhCCCCccE
Confidence 446799999999999999888754 4568999999999999999987643211 23578999999987533 23468999
Q ss_pred EEecCcch------------hhHH-HHHHHhccCCeEEEEeC
Q psy7834 289 IYVGGAVH------------HYPF-KLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 289 i~s~~~~~------------~~~~-~~~~~L~pgG~l~~~~~ 317 (492)
|++...-+ .+-. .+.+.|+|||.+++...
T Consensus 180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred EEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 99874211 1223 57889999999988654
No 326
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.60 E-value=9.4e-08 Score=92.02 Aligned_cols=92 Identities=26% Similarity=0.399 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEc
Q psy7834 195 PKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDG 274 (492)
Q Consensus 195 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~ 274 (492)
|-+...+++.+. +.++..++|.+||.|..|..+++.+++.++|+|+|.+++|++.|++++.. ..+++++++
T Consensus 5 pVll~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-------~~ri~~i~~ 75 (296)
T PRK00050 5 PVLLDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-------FGRFTLVHG 75 (296)
T ss_pred cccHHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-------CCcEEEEeC
Confidence 445677778775 57888999999999999999999986688999999999999999988753 247999999
Q ss_pred cCCCCCc--CC--CCccEEEecCcc
Q psy7834 275 DGREGHA--AE--GPYDVIYVGGAV 295 (492)
Q Consensus 275 d~~~~~~--~~--~~fD~i~s~~~~ 295 (492)
|..+... .. .++|.|+++...
T Consensus 76 ~f~~l~~~l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 76 NFSNLKEVLAEGLGKVDGILLDLGV 100 (296)
T ss_pred CHHHHHHHHHcCCCccCEEEECCCc
Confidence 9875421 11 279999987654
No 327
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.60 E-value=4.2e-08 Score=88.25 Aligned_cols=107 Identities=22% Similarity=0.271 Sum_probs=82.4
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCC--cCCCCc
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGH--AAEGPY 286 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~f 286 (492)
.+.|.+|||.++|-||+++..++++ ..+|+.++.+|..++.|.-|.-..+ +...+++++.||+.+.. +.+++|
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rG--A~~VitvEkdp~VLeLa~lNPwSr~---l~~~~i~iilGD~~e~V~~~~D~sf 206 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERG--AIHVITVEKDPNVLELAKLNPWSRE---LFEIAIKIILGDAYEVVKDFDDESF 206 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcC--CcEEEEEeeCCCeEEeeccCCCCcc---ccccccEEecccHHHHHhcCCcccc
Confidence 4569999999999999999999885 3389999999999999987743222 12346899999986542 467899
Q ss_pred cEEEecCcc---------hhhHHHHHHHhccCCeEEEEeCCCc
Q psy7834 287 DVIYVGGAV---------HHYPFKLMDQLKPGGVMWFTIGNAE 320 (492)
Q Consensus 287 D~i~s~~~~---------~~~~~~~~~~L~pgG~l~~~~~~~~ 320 (492)
|+|+-...- ..+-++++|+|||||+|+-.++...
T Consensus 207 DaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg 249 (287)
T COG2521 207 DAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPG 249 (287)
T ss_pred ceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC
Confidence 999855321 1233589999999999998887655
No 328
>KOG2361|consensus
Probab=98.60 E-value=8e-08 Score=87.17 Aligned_cols=96 Identities=26% Similarity=0.293 Sum_probs=72.1
Q ss_pred ceEEEeccccHHHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCC----CCcCCCCcc
Q psy7834 214 KVLDIGSGSGYLTACMAHMVGPT--GKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGRE----GHAAEGPYD 287 (492)
Q Consensus 214 ~vLDiGcG~G~~~~~la~~~~~~--~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~----~~~~~~~fD 287 (492)
+||+||||.|.....+.+.. ++ -+|++.|.|+.+++..+++.... ..++.....|+.. .+...+++|
T Consensus 74 ~ilEvGCGvGNtvfPll~~~-~n~~l~v~acDfsp~Ai~~vk~~~~~~------e~~~~afv~Dlt~~~~~~~~~~~svD 146 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTS-PNNRLKVYACDFSPRAIELVKKSSGYD------ESRVEAFVWDLTSPSLKEPPEEGSVD 146 (264)
T ss_pred hheeeccCCCcccchhhhcC-CCCCeEEEEcCCChHHHHHHHhccccc------hhhhcccceeccchhccCCCCcCccc
Confidence 89999999999999888764 55 68999999999999998875432 1344444445432 234568899
Q ss_pred EEEecCcchhhH--------HHHHHHhccCCeEEEEe
Q psy7834 288 VIYVGGAVHHYP--------FKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 288 ~i~s~~~~~~~~--------~~~~~~L~pgG~l~~~~ 316 (492)
.|....++..++ +++.++|||||.|++-.
T Consensus 147 ~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 147 IITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred eEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEee
Confidence 987776664443 48999999999999953
No 329
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.59 E-value=9.3e-08 Score=92.04 Aligned_cols=88 Identities=22% Similarity=0.227 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCC
Q psy7834 43 QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR 122 (492)
Q Consensus 43 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 122 (492)
.+.+++.| .+.++..+||.+||.|..|..+++.++++++|+|+|.+++|++.|++++.+ . .+++++++|..
T Consensus 8 l~Evl~~L--~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~-----~ri~~i~~~f~ 78 (296)
T PRK00050 8 LDEVVDAL--AIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--F-----GRFTLVHGNFS 78 (296)
T ss_pred HHHHHHhh--CCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--C-----CcEEEEeCCHH
Confidence 67888888 778889999999999999999999986678999999999999999998755 2 68999999987
Q ss_pred CCCC--CC--CcccceeccCc
Q psy7834 123 KGYL--DE--APYDIIHVGGS 139 (492)
Q Consensus 123 ~~~~--~~--~~~D~i~~~~~ 139 (492)
++.. +. .++|.|++..-
T Consensus 79 ~l~~~l~~~~~~vDgIl~DLG 99 (296)
T PRK00050 79 NLKEVLAEGLGKVDGILLDLG 99 (296)
T ss_pred HHHHHHHcCCCccCEEEECCC
Confidence 7532 11 27999988633
No 330
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.58 E-value=4.2e-07 Score=87.91 Aligned_cols=115 Identities=20% Similarity=0.220 Sum_probs=87.9
Q ss_pred cChHHHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEE
Q psy7834 193 SSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFV 272 (492)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~ 272 (492)
..|.+...+..+.. +++|..|||==||||.+....... +++++|.|++..|++-|+.|++.++ .....+.
T Consensus 181 ~~P~lAR~mVNLa~--v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~-----i~~~~~~ 250 (347)
T COG1041 181 MDPRLARAMVNLAR--VKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYG-----IEDYPVL 250 (347)
T ss_pred cCHHHHHHHHHHhc--cccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhC-----cCceeEE
Confidence 34555444444443 889999999999999999887654 3479999999999999999999874 2345555
Q ss_pred Ec-cCCCCCcCCCCccEEEecCcc---------------hhhHHHHHHHhccCCeEEEEeC
Q psy7834 273 DG-DGREGHAAEGPYDVIYVGGAV---------------HHYPFKLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 273 ~~-d~~~~~~~~~~fD~i~s~~~~---------------~~~~~~~~~~L~pgG~l~~~~~ 317 (492)
.. |+..++..+.++|.|++.... ....+.+.++|++||++++..+
T Consensus 251 ~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 251 KVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred EecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 55 998888777789999977532 1222477899999999999765
No 331
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.58 E-value=5.9e-08 Score=84.67 Aligned_cols=73 Identities=26% Similarity=0.294 Sum_probs=56.2
Q ss_pred CeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCC--CCc-ccce
Q psy7834 58 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLD--EAP-YDII 134 (492)
Q Consensus 58 ~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~-~D~i 134 (492)
..|+|+.||.|..++.+|+.+ .+|++||+++..++.|++|++-.|++ ++|+|+++|..++... ... +|.|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~----~~I~~i~gD~~~~~~~~~~~~~~D~v 73 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVA----DNIDFICGDFFELLKRLKSNKIFDVV 73 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-G----GGEEEEES-HHHHGGGB------SEE
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEeCCHHHHHhhccccccccEE
Confidence 369999999999999999997 79999999999999999999999975 7999999998775421 112 7888
Q ss_pred ecc
Q psy7834 135 HVG 137 (492)
Q Consensus 135 ~~~ 137 (492)
+++
T Consensus 74 FlS 76 (163)
T PF09445_consen 74 FLS 76 (163)
T ss_dssp EE-
T ss_pred EEC
Confidence 663
No 332
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.58 E-value=2.8e-07 Score=90.32 Aligned_cols=68 Identities=15% Similarity=0.228 Sum_probs=54.8
Q ss_pred hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCC
Q psy7834 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKG 124 (492)
Q Consensus 53 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 124 (492)
.+.++.+|||+|||||..+..|++...+..+++++|+|++|++.|++++...... -++.++++|..+.
T Consensus 60 ~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~----~~v~~i~gD~~~~ 127 (301)
T TIGR03438 60 ATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQ----LEVHGICADFTQP 127 (301)
T ss_pred hhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCC----ceEEEEEEcccch
Confidence 3456789999999999999999998622379999999999999999987653321 3578899998763
No 333
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.57 E-value=8.7e-09 Score=92.30 Aligned_cols=76 Identities=16% Similarity=0.296 Sum_probs=57.8
Q ss_pred hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCC--CCCCc
Q psy7834 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY--LDEAP 130 (492)
Q Consensus 53 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~ 130 (492)
+..+..++||+|||||..+..|-... .+++|||||++|+++|.++--. =++.++++.... ...+.
T Consensus 122 ~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eKg~Y----------D~L~~Aea~~Fl~~~~~er 188 (287)
T COG4976 122 DLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEKGLY----------DTLYVAEAVLFLEDLTQER 188 (287)
T ss_pred cCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhccch----------HHHHHHHHHHHhhhccCCc
Confidence 44456899999999999999999998 7999999999999999875211 134455544222 34678
Q ss_pred ccceeccCccc
Q psy7834 131 YDIIHVGGSIE 141 (492)
Q Consensus 131 ~D~i~~~~~~~ 141 (492)
||+|+...++.
T Consensus 189 ~DLi~AaDVl~ 199 (287)
T COG4976 189 FDLIVAADVLP 199 (287)
T ss_pred ccchhhhhHHH
Confidence 99999876654
No 334
>KOG3010|consensus
Probab=98.57 E-value=7.9e-08 Score=87.25 Aligned_cols=96 Identities=17% Similarity=0.141 Sum_probs=66.3
Q ss_pred cCCCC-eEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCccc
Q psy7834 54 LTEGK-KVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYD 132 (492)
Q Consensus 54 ~~~~~-~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 132 (492)
..++. .++|+|||+|..++.+|... .+|+|+|+|+.|++.|++.....-.. ...++...+..++.-.++++|
T Consensus 30 ~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~----t~~~ms~~~~v~L~g~e~SVD 102 (261)
T KOG3010|consen 30 RTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCH----TPSTMSSDEMVDLLGGEESVD 102 (261)
T ss_pred hCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCccccc----CCccccccccccccCCCccee
Confidence 33443 89999999999999999997 79999999999999998764322110 123444444444443489999
Q ss_pred ceeccCccc--ccccch--hcccccChh
Q psy7834 133 IIHVGGSIE--DIPEGV--RFGHIASPK 156 (492)
Q Consensus 133 ~i~~~~~~~--~l~~~L--~~~~l~~~~ 156 (492)
+|++..++| ++.+.+ ..++++.++
T Consensus 103 lI~~Aqa~HWFdle~fy~~~~rvLRk~G 130 (261)
T KOG3010|consen 103 LITAAQAVHWFDLERFYKEAYRVLRKDG 130 (261)
T ss_pred eehhhhhHHhhchHHHHHHHHHHcCCCC
Confidence 999999988 444443 444444433
No 335
>KOG1975|consensus
Probab=98.56 E-value=1.6e-07 Score=88.57 Aligned_cols=111 Identities=24% Similarity=0.247 Sum_probs=81.4
Q ss_pred ccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCC-CCCCcEEEEEccCCCC-----C-
Q psy7834 208 YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNL-MEGGRVQFVDGDGREG-----H- 280 (492)
Q Consensus 208 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~-~~~~~v~~~~~d~~~~-----~- 280 (492)
+.+++..++|+|||-|...+..-+.. -++++|+||++..+++|+++.+...... ...-.+.|+.+|.... .
T Consensus 114 y~~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e 191 (389)
T KOG1975|consen 114 YTKRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLE 191 (389)
T ss_pred HhccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhcc
Confidence 46789999999999999888776543 4579999999999999999876532110 0112478899986421 2
Q ss_pred cCCCCccEEEecCcchhhH----------HHHHHHhccCCeEEEEeCCCc
Q psy7834 281 AAEGPYDVIYVGGAVHHYP----------FKLMDQLKPGGVMWFTIGNAE 320 (492)
Q Consensus 281 ~~~~~fD~i~s~~~~~~~~----------~~~~~~L~pgG~l~~~~~~~~ 320 (492)
+.+.+||+|-+..++|.-- .++.+.|+|||.++-++|...
T Consensus 192 ~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 192 FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 2333499998888776322 378899999999999887665
No 336
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.56 E-value=2.3e-07 Score=84.42 Aligned_cols=82 Identities=26% Similarity=0.316 Sum_probs=61.2
Q ss_pred hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCccc
Q psy7834 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYD 132 (492)
Q Consensus 53 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 132 (492)
.+.++.+|+|+.||.|.|++.+|+.. +.++|+|+|+++.+++..+++++.++++ .++..+++|+.+... ...||
T Consensus 98 ~v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~----~~i~~~~~D~~~~~~-~~~~d 171 (200)
T PF02475_consen 98 LVKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVE----NRIEVINGDAREFLP-EGKFD 171 (200)
T ss_dssp C--TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-T----TTEEEEES-GGG----TT-EE
T ss_pred cCCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCC----CeEEEEcCCHHHhcC-ccccC
Confidence 46789999999999999999999953 3378999999999999999999999985 789999999988765 78899
Q ss_pred ceeccCcc
Q psy7834 133 IIHVGGSI 140 (492)
Q Consensus 133 ~i~~~~~~ 140 (492)
.|+++...
T Consensus 172 rvim~lp~ 179 (200)
T PF02475_consen 172 RVIMNLPE 179 (200)
T ss_dssp EEEE--TS
T ss_pred EEEECChH
Confidence 99987543
No 337
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.55 E-value=2e-07 Score=90.19 Aligned_cols=86 Identities=19% Similarity=0.106 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEec-
Q psy7834 41 FQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLG- 119 (492)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~- 119 (492)
.+.+.+..+. .+++|..|||=.||||.+.+...-.+ .+++|.|++..|++-|+.|++..++ ....++.+
T Consensus 184 ~lAR~mVNLa--~v~~G~~vlDPFcGTGgiLiEagl~G---~~viG~Did~~mv~gak~Nl~~y~i-----~~~~~~~~~ 253 (347)
T COG1041 184 RLARAMVNLA--RVKRGELVLDPFCGTGGILIEAGLMG---ARVIGSDIDERMVRGAKINLEYYGI-----EDYPVLKVL 253 (347)
T ss_pred HHHHHHHHHh--ccccCCEeecCcCCccHHHHhhhhcC---ceEeecchHHHHHhhhhhhhhhhCc-----CceeEEEec
Confidence 3456666666 89999999999999999999999885 8999999999999999999999887 56766666
Q ss_pred CCCCCCCCCCcccceec
Q psy7834 120 DGRKGYLDEAPYDIIHV 136 (492)
Q Consensus 120 d~~~~~~~~~~~D~i~~ 136 (492)
|+.++|++++++|.|++
T Consensus 254 Da~~lpl~~~~vdaIat 270 (347)
T COG1041 254 DATNLPLRDNSVDAIAT 270 (347)
T ss_pred ccccCCCCCCccceEEe
Confidence 99999998888999977
No 338
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.55 E-value=2.2e-07 Score=86.33 Aligned_cols=99 Identities=18% Similarity=0.194 Sum_probs=62.9
Q ss_pred CCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHH-HHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccE
Q psy7834 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQ-ANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDV 288 (492)
Q Consensus 210 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~-a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 288 (492)
.++.+|||+|||||.++..+++.. ..+|+|+|+++.|+.. .+++.+-. .....|++ ..+..+.+..-..||+
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~g--a~~v~avD~~~~~l~~~l~~~~~v~---~~~~~ni~--~~~~~~~~~d~~~~Dv 146 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKG--AKEVYGVDVGYNQLAEKLRQDERVK---VLERTNIR--YVTPADIFPDFATFDV 146 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHHHhcCCCee---EeecCCcc--cCCHhHcCCCceeeeE
Confidence 357799999999999999999873 4589999999988875 22221100 00112232 1111122222246786
Q ss_pred EEecCcchhhHHHHHHHhccCCeEEEEeCC
Q psy7834 289 IYVGGAVHHYPFKLMDQLKPGGVMWFTIGN 318 (492)
Q Consensus 289 i~s~~~~~~~~~~~~~~L~pgG~l~~~~~~ 318 (492)
+|++. .++...+.+.|+| |.+++-+-|
T Consensus 147 sfiS~--~~~l~~i~~~l~~-~~~~~L~KP 173 (228)
T TIGR00478 147 SFISL--ISILPELDLLLNP-NDLTLLFKP 173 (228)
T ss_pred EEeeh--HhHHHHHHHHhCc-CeEEEEcCh
Confidence 66554 4467789999999 888876543
No 339
>KOG2940|consensus
Probab=98.55 E-value=1e-07 Score=85.35 Aligned_cols=109 Identities=17% Similarity=0.162 Sum_probs=84.4
Q ss_pred HHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCC
Q psy7834 199 AQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGRE 278 (492)
Q Consensus 199 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 278 (492)
..+++.+.+--+.-..++|||||-|++...+.... -++++-+|-|-.|++.++..- .. .-.+....+|-+.
T Consensus 60 ~rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~q-dp------~i~~~~~v~DEE~ 130 (325)
T KOG2940|consen 60 DRLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQ-DP------SIETSYFVGDEEF 130 (325)
T ss_pred HHHHHHHHHHhhhCcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccC-CC------ceEEEEEecchhc
Confidence 34445544333445699999999999999987764 457999999999999887531 11 1135677888877
Q ss_pred CCcCCCCccEEEecCcchhhHH------HHHHHhccCCeEEEEe
Q psy7834 279 GHAAEGPYDVIYVGGAVHHYPF------KLMDQLKPGGVMWFTI 316 (492)
Q Consensus 279 ~~~~~~~fD~i~s~~~~~~~~~------~~~~~L~pgG~l~~~~ 316 (492)
+++.++++|+|+++..+||..+ ++...|||+|.++-+.
T Consensus 131 Ldf~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 131 LDFKENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASM 174 (325)
T ss_pred ccccccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHH
Confidence 7888899999999999998865 8889999999998764
No 340
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.55 E-value=1.8e-07 Score=79.95 Aligned_cols=105 Identities=15% Similarity=0.192 Sum_probs=83.4
Q ss_pred cccccccccCCcccCCccccccchhhhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHH
Q psy7834 15 YANCITNIGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLV 94 (492)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~ 94 (492)
|.+++..++ ...+++++. +++|...+ +...|.-||++|.|||-+|.++.+..-++..++++|+|++.+
T Consensus 19 wi~~PrtVG-aI~PsSs~l---------A~~M~s~I--~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~ 86 (194)
T COG3963 19 WIDNPRTVG-AILPSSSIL---------ARKMASVI--DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFV 86 (194)
T ss_pred HhcCCceee-eecCCcHHH---------HHHHHhcc--CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHH
Confidence 445555553 456677766 78887777 888999999999999999999998875778999999999999
Q ss_pred HHHHHhhhcCCCCccccCceEEEecCCCCCC-----CCCCcccceeccCccc
Q psy7834 95 QRATHNVISGNPEFVKDGRIKFVLGDGRKGY-----LDEAPYDIIHVGGSIE 141 (492)
Q Consensus 95 ~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~~D~i~~~~~~~ 141 (492)
....+.. +.++++.||++.+. .....||.|+++..+-
T Consensus 87 ~~L~~~~----------p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll 128 (194)
T COG3963 87 CHLNQLY----------PGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLL 128 (194)
T ss_pred HHHHHhC----------CCccccccchhhHHHHHhhcCCCeeeeEEeccccc
Confidence 8877765 56779999998765 3456799999976654
No 341
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.55 E-value=2.3e-07 Score=90.44 Aligned_cols=81 Identities=20% Similarity=0.293 Sum_probs=63.1
Q ss_pred CCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcC-CCCccccCceEEEe-cCCCCCC----CCCC
Q psy7834 56 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISG-NPEFVKDGRIKFVL-GDGRKGY----LDEA 129 (492)
Q Consensus 56 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~-~~~~~~~~~v~~~~-~d~~~~~----~~~~ 129 (492)
.+.++||||||+|.....|+... ...+++|+|+++.+++.|+++++.+ ++. .++++.+ .|..... .+.+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~----~~I~~~~~~~~~~i~~~i~~~~~ 188 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLN----GAIRLRLQKDSKAIFKGIIHKNE 188 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCc----CcEEEEEccchhhhhhcccccCC
Confidence 45799999999999988888765 3479999999999999999999998 674 6788864 3333222 2356
Q ss_pred cccceeccCccc
Q psy7834 130 PYDIIHVGGSIE 141 (492)
Q Consensus 130 ~~D~i~~~~~~~ 141 (492)
.||+|+|+-..+
T Consensus 189 ~fDlivcNPPf~ 200 (321)
T PRK11727 189 RFDATLCNPPFH 200 (321)
T ss_pred ceEEEEeCCCCc
Confidence 899999965553
No 342
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.55 E-value=6.8e-07 Score=80.09 Aligned_cols=104 Identities=21% Similarity=0.295 Sum_probs=67.7
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCC----cCCC
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGH----AAEG 284 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~ 284 (492)
..++.+|||+|||+|..++.+++.. ...+|+..|.++ .++..+.|++.++. ....++.+...|..+.. ....
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~--~~~~~v~v~~L~Wg~~~~~~~~~~~ 118 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGS--LLDGRVSVRPLDWGDELDSDLLEPH 118 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT----------EEEE--TTS-HHHHHHS-S
T ss_pred hcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccc--cccccccCcEEEecCcccccccccc
Confidence 5568899999999999999999884 456899999999 99999999987642 12356788887765422 2345
Q ss_pred CccEEEecCcch------hhHHHHHHHhccCCeEEEEe
Q psy7834 285 PYDVIYVGGAVH------HYPFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 285 ~fD~i~s~~~~~------~~~~~~~~~L~pgG~l~~~~ 316 (492)
+||+|+...++. .+.+-+.++|+|+|.+++..
T Consensus 119 ~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 119 SFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp SBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred cCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 899999776653 33347788999999977754
No 343
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.54 E-value=1.3e-07 Score=85.49 Aligned_cols=98 Identities=26% Similarity=0.295 Sum_probs=69.2
Q ss_pred CCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEEe
Q psy7834 212 GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYV 291 (492)
Q Consensus 212 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~s 291 (492)
-.+.||.|+|-|..|..+.... ..+|..+|..+..++.|++.+.... ..-.++.+..+++..++.++||+|++
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~-----~~v~~~~~~gLQ~f~P~~~~YDlIW~ 128 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDN-----PRVGEFYCVGLQDFTPEEGKYDLIWI 128 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGG-----CCEEEEEES-GGG----TT-EEEEEE
T ss_pred cceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccC-----CCcceEEecCHhhccCCCCcEeEEEe
Confidence 4689999999999998775443 3479999999999999998765411 12356777777654445579999999
Q ss_pred cCcchhhHH--------HHHHHhccCCeEEEEe
Q psy7834 292 GGAVHHYPF--------KLMDQLKPGGVMWFTI 316 (492)
Q Consensus 292 ~~~~~~~~~--------~~~~~L~pgG~l~~~~ 316 (492)
.+++-|+.| ++.+.|+|+|.+++-.
T Consensus 129 QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 129 QWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp ES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 999988875 7889999999999953
No 344
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.54 E-value=4.2e-07 Score=82.56 Aligned_cols=88 Identities=14% Similarity=0.103 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCC
Q psy7834 43 QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR 122 (492)
Q Consensus 43 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 122 (492)
.+.+..++. ...++.+|||++||+|.+++.+++.+. .+|++||.++.+++.+++|++.+++. .+++++++|+.
T Consensus 37 rea~f~~l~-~~~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~~----~~~~~~~~D~~ 109 (189)
T TIGR00095 37 RELFFNILR-PEIQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKSG----EQAEVVRNSAL 109 (189)
T ss_pred HHHHHHHHH-HhcCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCCc----ccEEEEehhHH
Confidence 334444442 224688999999999999999999853 58999999999999999999988873 57999999985
Q ss_pred CCC--C-CCC-cccceecc
Q psy7834 123 KGY--L-DEA-PYDIIHVG 137 (492)
Q Consensus 123 ~~~--~-~~~-~~D~i~~~ 137 (492)
+.. . ... .||+|+..
T Consensus 110 ~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 110 RALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred HHHHHhhccCCCceEEEEC
Confidence 531 1 122 36777664
No 345
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.54 E-value=3.1e-07 Score=83.68 Aligned_cols=71 Identities=23% Similarity=0.407 Sum_probs=56.3
Q ss_pred hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCC-------
Q psy7834 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY------- 125 (492)
Q Consensus 53 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~------- 125 (492)
.+.++++|||+|||+|.++..+++...+.++|+++|+|+.+ .. .+++++++|+.+..
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-----~~i~~~~~d~~~~~~~~~l~~ 92 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-----ENVDFIRGDFTDEEVLNKIRE 92 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-----CCceEEEeeCCChhHHHHHHH
Confidence 56788999999999999999999887555789999999865 11 46789999987642
Q ss_pred -CCCCcccceeccCc
Q psy7834 126 -LDEAPYDIIHVGGS 139 (492)
Q Consensus 126 -~~~~~~D~i~~~~~ 139 (492)
.+.++||+|+++.+
T Consensus 93 ~~~~~~~D~V~~~~~ 107 (188)
T TIGR00438 93 RVGDDKVDVVMSDAA 107 (188)
T ss_pred HhCCCCccEEEcCCC
Confidence 34568999998543
No 346
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.52 E-value=1.7e-07 Score=102.06 Aligned_cols=79 Identities=13% Similarity=0.152 Sum_probs=65.1
Q ss_pred cCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCC-CCCccc
Q psy7834 54 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-DEAPYD 132 (492)
Q Consensus 54 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D 132 (492)
..++++|||+|||||.+++.++... . .+|++||+|+.+++.|++|++.+++. ..+++++++|+.+... ..++||
T Consensus 536 ~~~g~rVLDlf~gtG~~sl~aa~~G-a-~~V~~vD~s~~al~~a~~N~~~ng~~---~~~v~~i~~D~~~~l~~~~~~fD 610 (702)
T PRK11783 536 MAKGKDFLNLFAYTGTASVHAALGG-A-KSTTTVDMSNTYLEWAERNFALNGLS---GRQHRLIQADCLAWLKEAREQFD 610 (702)
T ss_pred hcCCCeEEEcCCCCCHHHHHHHHCC-C-CEEEEEeCCHHHHHHHHHHHHHhCCC---ccceEEEEccHHHHHHHcCCCcC
Confidence 3468899999999999999999863 2 47999999999999999999998872 1379999999876321 146899
Q ss_pred ceecc
Q psy7834 133 IIHVG 137 (492)
Q Consensus 133 ~i~~~ 137 (492)
+|+++
T Consensus 611 lIilD 615 (702)
T PRK11783 611 LIFID 615 (702)
T ss_pred EEEEC
Confidence 99884
No 347
>KOG0820|consensus
Probab=98.52 E-value=7e-07 Score=82.41 Aligned_cols=100 Identities=29% Similarity=0.356 Sum_probs=78.8
Q ss_pred ccCCCCcc-cChHHHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCC
Q psy7834 185 SLGFGSVM-SSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNL 263 (492)
Q Consensus 185 ~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~ 263 (492)
..+.|+++ ..|.+.+.+.+... +++++.||++|.|||.+|..|.+.. .+|+++|+++.|++...++.+..
T Consensus 33 nkd~GQHilkNp~v~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gt---- 103 (315)
T KOG0820|consen 33 NKDFGQHILKNPLVIDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGT---- 103 (315)
T ss_pred ccccchhhhcCHHHHHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCC----
Confidence 34557777 45777777777665 8999999999999999999999875 36999999999999998887653
Q ss_pred CCCCcEEEEEccCCCCCcCCCCccEEEecCcc
Q psy7834 264 MEGGRVQFVDGDGREGHAAEGPYDVIYVGGAV 295 (492)
Q Consensus 264 ~~~~~v~~~~~d~~~~~~~~~~fD~i~s~~~~ 295 (492)
+.....+++.+|...... ..||.+++|...
T Consensus 104 p~~~kLqV~~gD~lK~d~--P~fd~cVsNlPy 133 (315)
T KOG0820|consen 104 PKSGKLQVLHGDFLKTDL--PRFDGCVSNLPY 133 (315)
T ss_pred CccceeeEEecccccCCC--cccceeeccCCc
Confidence 234578999999865432 369999997644
No 348
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.52 E-value=3.7e-07 Score=84.55 Aligned_cols=88 Identities=24% Similarity=0.363 Sum_probs=66.1
Q ss_pred CCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEEe
Q psy7834 212 GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYV 291 (492)
Q Consensus 212 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~s 291 (492)
..++||||+|.|..|..++..+. +|++.|+|+.|....+++ +.+.+..| +....+.+||+|.+
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL~~k------------g~~vl~~~--~w~~~~~~fDvIsc 157 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRLSKK------------GFTVLDID--DWQQTDFKFDVISC 157 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHHHhC------------CCeEEehh--hhhccCCceEEEee
Confidence 56899999999999999999874 499999999997655432 23444333 21223468999998
Q ss_pred cCcchh------hHHHHHHHhccCCeEEEEe
Q psy7834 292 GGAVHH------YPFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 292 ~~~~~~------~~~~~~~~L~pgG~l~~~~ 316 (492)
-..+.. +..++++.|+|+|++++++
T Consensus 158 LNvLDRc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 158 LNVLDRCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred hhhhhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 877742 3358999999999999975
No 349
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.50 E-value=6.5e-07 Score=81.63 Aligned_cols=79 Identities=25% Similarity=0.277 Sum_probs=64.3
Q ss_pred CCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCC---CCCCcccc
Q psy7834 57 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY---LDEAPYDI 133 (492)
Q Consensus 57 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~D~ 133 (492)
...+||||||.|.+...+|... |+..++|||+....+..|.+++.+.++ .|+.++++|+.... ++++++|.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l-----~Nv~~~~~da~~~l~~~~~~~~v~~ 91 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGL-----KNVRFLRGDARELLRRLFPPGSVDR 91 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTT-----SSEEEEES-CTTHHHHHSTTTSEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcc-----cceEEEEccHHHHHhhcccCCchhe
Confidence 3489999999999999999996 789999999999999999999988888 89999999997732 45688999
Q ss_pred eeccCccc
Q psy7834 134 IHVGGSIE 141 (492)
Q Consensus 134 i~~~~~~~ 141 (492)
|+.+..-+
T Consensus 92 i~i~FPDP 99 (195)
T PF02390_consen 92 IYINFPDP 99 (195)
T ss_dssp EEEES---
T ss_pred EEEeCCCC
Confidence 98865554
No 350
>PRK04148 hypothetical protein; Provisional
Probab=98.50 E-value=2.2e-06 Score=72.09 Aligned_cols=90 Identities=13% Similarity=0.077 Sum_probs=67.9
Q ss_pred CCCceEEEeccccH-HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcC-CCCccE
Q psy7834 211 PGAKVLDIGSGSGY-LTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAA-EGPYDV 288 (492)
Q Consensus 211 ~~~~vLDiGcG~G~-~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~ 288 (492)
++.++||||||+|. ++..|++.+ .+|+++|+++..++.++++ .++++.+|+.+.... -+.+|+
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G---~~ViaIDi~~~aV~~a~~~------------~~~~v~dDlf~p~~~~y~~a~l 80 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESG---FDVIVIDINEKAVEKAKKL------------GLNAFVDDLFNPNLEIYKNAKL 80 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCC---CEEEEEECCHHHHHHHHHh------------CCeEEECcCCCCCHHHHhcCCE
Confidence 46789999999996 888888653 3799999999998888765 257899998764333 467999
Q ss_pred EEecCcchhhHHHHHHHhc-cCCeEEEE
Q psy7834 289 IYVGGAVHHYPFKLMDQLK-PGGVMWFT 315 (492)
Q Consensus 289 i~s~~~~~~~~~~~~~~L~-pgG~l~~~ 315 (492)
|+|.-.-..+-.-+.++-+ -|.-++|.
T Consensus 81 iysirpp~el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 81 IYSIRPPRDLQPFILELAKKINVPLIIK 108 (134)
T ss_pred EEEeCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 9998776666655555554 46667774
No 351
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.49 E-value=6.4e-07 Score=82.93 Aligned_cols=92 Identities=17% Similarity=0.071 Sum_probs=69.0
Q ss_pred hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhh------c-CCCCccccCceEEEecCCCCCC
Q psy7834 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVI------S-GNPEFVKDGRIKFVLGDGRKGY 125 (492)
Q Consensus 53 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~------~-~~~~~~~~~~v~~~~~d~~~~~ 125 (492)
.+.++.+||+.|||.|..+..||+++ .+|+|+|+|+.+++.+.+... + .........+++++++|+++++
T Consensus 40 ~~~~~~rvLvPgCGkg~D~~~LA~~G---~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~ 116 (226)
T PRK13256 40 NINDSSVCLIPMCGCSIDMLFFLSKG---VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP 116 (226)
T ss_pred CCCCCCeEEEeCCCChHHHHHHHhCC---CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCC
Confidence 34467899999999999999999995 789999999999999866210 0 0000011257999999999986
Q ss_pred CC---CCcccceeccCcccccccch
Q psy7834 126 LD---EAPYDIIHVGGSIEDIPEGV 147 (492)
Q Consensus 126 ~~---~~~~D~i~~~~~~~~l~~~L 147 (492)
.. .+.||+|+-..++..++..+
T Consensus 117 ~~~~~~~~fD~VyDra~~~Alpp~~ 141 (226)
T PRK13256 117 KIANNLPVFDIWYDRGAYIALPNDL 141 (226)
T ss_pred ccccccCCcCeeeeehhHhcCCHHH
Confidence 42 35799999988887776654
No 352
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=1.2e-06 Score=82.28 Aligned_cols=104 Identities=19% Similarity=0.202 Sum_probs=78.6
Q ss_pred ChHHHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEE
Q psy7834 194 SPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVD 273 (492)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~ 273 (492)
.+.+.+.+.+... +.++++|||||+|.|.+|..|+++.. +|+++|+++.+++..++.+.. ..|+++++
T Consensus 15 d~~v~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~-------~~n~~vi~ 82 (259)
T COG0030 15 DKNVIDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAA---RVTAIEIDRRLAEVLKERFAP-------YDNLTVIN 82 (259)
T ss_pred CHHHHHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcC---eEEEEEeCHHHHHHHHHhccc-------ccceEEEe
Confidence 3445667777665 66789999999999999999999863 599999999999999888753 35899999
Q ss_pred ccCCCCCcCCC-CccEEEecCcchhhHHHHHHHhccC
Q psy7834 274 GDGREGHAAEG-PYDVIYVGGAVHHYPFKLMDQLKPG 309 (492)
Q Consensus 274 ~d~~~~~~~~~-~fD~i~s~~~~~~~~~~~~~~L~pg 309 (492)
+|+.....+.- .++.|++|...+=-.+-+.++|+..
T Consensus 83 ~DaLk~d~~~l~~~~~vVaNlPY~Isspii~kll~~~ 119 (259)
T COG0030 83 GDALKFDFPSLAQPYKVVANLPYNISSPILFKLLEEK 119 (259)
T ss_pred CchhcCcchhhcCCCEEEEcCCCcccHHHHHHHHhcc
Confidence 99976554432 6899999976543334445555443
No 353
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.48 E-value=1.3e-06 Score=84.04 Aligned_cols=104 Identities=20% Similarity=0.365 Sum_probs=71.9
Q ss_pred CCceEEEeccccH----HHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHHH--------------hh-----CC--C-
Q psy7834 212 GAKVLDIGSGSGY----LTACMAHMVG---PTGKVYAVEHIEDLVAQANKSMH--------------TY-----YP--N- 262 (492)
Q Consensus 212 ~~~vLDiGcG~G~----~~~~la~~~~---~~~~v~giD~s~~~l~~a~~~~~--------------~~-----~~--~- 262 (492)
.-+|+..||.||. ++..+.+..+ ..-+|+|+|+|+.+++.|++-.- ++ +. .
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 3699999999996 3333444321 13579999999999999987420 00 00 0
Q ss_pred C----CCCCcEEEEEccCCCCC-cCCCCccEEEecCcchhhH--------HHHHHHhccCCeEEEE
Q psy7834 263 L----MEGGRVQFVDGDGREGH-AAEGPYDVIYVGGAVHHYP--------FKLMDQLKPGGVMWFT 315 (492)
Q Consensus 263 ~----~~~~~v~~~~~d~~~~~-~~~~~fD~i~s~~~~~~~~--------~~~~~~L~pgG~l~~~ 315 (492)
+ .....|+|.+.|+.+.. +..+.||+|+|..++.++. .++.+.|+|||.|++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 0 01145789999987632 3357899999988876663 3788999999999884
No 354
>KOG2915|consensus
Probab=98.48 E-value=7.9e-07 Score=82.04 Aligned_cols=89 Identities=21% Similarity=0.253 Sum_probs=80.0
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCC
Q psy7834 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 123 (492)
Q Consensus 44 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 123 (492)
+.++.+| ++.+|.+||+-|+|+|.++-++++.++|.++++.+|+-+.-.+.|++.++++++. +++++.+.|+..
T Consensus 95 a~I~~~L--~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~----~~vt~~hrDVc~ 168 (314)
T KOG2915|consen 95 AMILSML--EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG----DNVTVTHRDVCG 168 (314)
T ss_pred HHHHHHh--cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC----cceEEEEeeccc
Confidence 7888889 9999999999999999999999999999999999999999999999999999984 899999999877
Q ss_pred CCCC--CCcccceeccC
Q psy7834 124 GYLD--EAPYDIIHVGG 138 (492)
Q Consensus 124 ~~~~--~~~~D~i~~~~ 138 (492)
.-+. +..+|.|++..
T Consensus 169 ~GF~~ks~~aDaVFLDl 185 (314)
T KOG2915|consen 169 SGFLIKSLKADAVFLDL 185 (314)
T ss_pred CCccccccccceEEEcC
Confidence 6553 56799998843
No 355
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.47 E-value=2.8e-07 Score=92.11 Aligned_cols=115 Identities=20% Similarity=0.271 Sum_probs=72.7
Q ss_pred HHHHHHHHHhccCC-CCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccC
Q psy7834 198 HAQALEILKDYLKP-GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDG 276 (492)
Q Consensus 198 ~~~~~~~l~~~~~~-~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~ 276 (492)
...+.+.+.+.+.. +.+|||+-||.|.++..||+.+ .+|+|+|+++++++.|++|+..++ ..|++|+.+++
T Consensus 182 ~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~-----i~n~~f~~~~~ 253 (352)
T PF05958_consen 182 NEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNG-----IDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT-------SEEEEE--S
T ss_pred HHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcC-----CCcceEEEeec
Confidence 34444444443332 2389999999999999999875 369999999999999999999864 57899998876
Q ss_pred CCCCc----------------CCCCccEEEecCcchhhHHHHHHHh-ccCCeEEEEeCCCc
Q psy7834 277 REGHA----------------AEGPYDVIYVGGAVHHYPFKLMDQL-KPGGVMWFTIGNAE 320 (492)
Q Consensus 277 ~~~~~----------------~~~~fD~i~s~~~~~~~~~~~~~~L-~pgG~l~~~~~~~~ 320 (492)
.+... ....+|+|+.+..-.-+...+.+.+ ++.=.+|++|.|.+
T Consensus 254 ~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~~~~ivYvSCnP~t 314 (352)
T PF05958_consen 254 EDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIKKLKRIVYVSCNPAT 314 (352)
T ss_dssp HHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHHHSSEEEEEES-HHH
T ss_pred cchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHhcCCeEEEEECCHHH
Confidence 43211 1236899998765433333333333 45667888997765
No 356
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.47 E-value=9.1e-07 Score=90.61 Aligned_cols=97 Identities=30% Similarity=0.335 Sum_probs=66.6
Q ss_pred CCceEEEeccccHHHHHHHHHh---CCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccE
Q psy7834 212 GAKVLDIGSGSGYLTACMAHMV---GPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDV 288 (492)
Q Consensus 212 ~~~vLDiGcG~G~~~~~la~~~---~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 288 (492)
+..|||||||+|.++...++.. +...+|++||.++.++...+++++.++ -.++|+++++|+++.. ...++|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~----w~~~V~vi~~d~r~v~-lpekvDI 261 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG----WGDKVTVIHGDMREVE-LPEKVDI 261 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT----TTTTEEEEES-TTTSC-HSS-EEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC----CCCeEEEEeCcccCCC-CCCceeE
Confidence 4579999999999987665542 235689999999998887777666543 2367999999998754 3458999
Q ss_pred EEecCc----chhhH----HHHHHHhccCCeEE
Q psy7834 289 IYVGGA----VHHYP----FKLMDQLKPGGVMW 313 (492)
Q Consensus 289 i~s~~~----~~~~~----~~~~~~L~pgG~l~ 313 (492)
|+|-.. .+.+. +...+.|||||+++
T Consensus 262 IVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 262 IVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 998642 23332 34567899998775
No 357
>PRK00811 spermidine synthase; Provisional
Probab=98.45 E-value=3.4e-07 Score=88.75 Aligned_cols=82 Identities=26% Similarity=0.277 Sum_probs=63.9
Q ss_pred CCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCC-CCCcccc
Q psy7834 55 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-DEAPYDI 133 (492)
Q Consensus 55 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~ 133 (492)
..+++||++|||+|..+..+.+.. ...+|++||+++++++.|++++...+...+..++++++.+|+..... ..++||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 456899999999999999998863 33699999999999999999876432111223689999999876432 3578999
Q ss_pred eecc
Q psy7834 134 IHVG 137 (492)
Q Consensus 134 i~~~ 137 (492)
|++.
T Consensus 154 Ii~D 157 (283)
T PRK00811 154 IIVD 157 (283)
T ss_pred EEEC
Confidence 9884
No 358
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.45 E-value=5e-07 Score=83.76 Aligned_cols=92 Identities=24% Similarity=0.301 Sum_probs=67.9
Q ss_pred hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHh-hhcC---CCCc---cccCceEEEecCCCCCC
Q psy7834 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN-VISG---NPEF---VKDGRIKFVLGDGRKGY 125 (492)
Q Consensus 53 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~-~~~~---~~~~---~~~~~v~~~~~d~~~~~ 125 (492)
...++.+||..|||.|.....||+++ .+|+|+|+|+.+++.|.+. .... .... ....+|+++++|.++++
T Consensus 34 ~~~~~~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~ 110 (218)
T PF05724_consen 34 ALKPGGRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELP 110 (218)
T ss_dssp TTSTSEEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGG
T ss_pred CCCCCCeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCC
Confidence 56777899999999999999999985 8999999999999998432 2110 0000 01247899999999987
Q ss_pred CCC-CcccceeccCcccccccch
Q psy7834 126 LDE-APYDIIHVGGSIEDIPEGV 147 (492)
Q Consensus 126 ~~~-~~~D~i~~~~~~~~l~~~L 147 (492)
... ++||+|+-..++..++..+
T Consensus 111 ~~~~g~fD~iyDr~~l~Alpp~~ 133 (218)
T PF05724_consen 111 PEDVGKFDLIYDRTFLCALPPEM 133 (218)
T ss_dssp GSCHHSEEEEEECSSTTTS-GGG
T ss_pred hhhcCCceEEEEecccccCCHHH
Confidence 543 4799999998888776654
No 359
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.42 E-value=8.5e-07 Score=71.24 Aligned_cols=77 Identities=21% Similarity=0.343 Sum_probs=61.8
Q ss_pred eEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCC-CCCcccceecc
Q psy7834 59 KVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-DEAPYDIIHVG 137 (492)
Q Consensus 59 ~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~i~~~ 137 (492)
+++|+|||+|.++..+++. ...+++++|+++++++.+++....... .+++++.+|..+... ...+||+|+++
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~d~i~~~ 73 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALLA-----DNVEVLKGDAEELPPEADESFDVIISD 73 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhcccc-----cceEEEEcChhhhccccCCceEEEEEc
Confidence 4899999999999999982 348999999999999998854433333 679999999988764 46789999997
Q ss_pred Ccccc
Q psy7834 138 GSIED 142 (492)
Q Consensus 138 ~~~~~ 142 (492)
...+.
T Consensus 74 ~~~~~ 78 (107)
T cd02440 74 PPLHH 78 (107)
T ss_pred cceee
Confidence 76644
No 360
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.41 E-value=7.9e-07 Score=85.22 Aligned_cols=102 Identities=22% Similarity=0.251 Sum_probs=74.0
Q ss_pred CCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCc---CCCCc
Q psy7834 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHA---AEGPY 286 (492)
Q Consensus 210 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~f 286 (492)
..|.+|||+-|=||.++...+..+ ..+|+.||.|..+++.|++|+..++. ...+++|++.|+.+.+. ..++|
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~---~~~~~~~~~~Dvf~~l~~~~~~~~f 196 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGL---DLDRHRFIQGDVFKFLKRLKKGGRF 196 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT----CCTCEEEEES-HHHHHHHHHHTT-E
T ss_pred cCCCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCC---CccceEEEecCHHHHHHHHhcCCCC
Confidence 458899999999999999877543 44799999999999999999998762 23579999999865332 34689
Q ss_pred cEEEecCcc------------hhhHHHHHHHhccCCeEEEEe
Q psy7834 287 DVIYVGGAV------------HHYPFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 287 D~i~s~~~~------------~~~~~~~~~~L~pgG~l~~~~ 316 (492)
|+|+....- ..+...+.++|+|||.|++..
T Consensus 197 D~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 197 DLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp EEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 999977421 123347789999999988754
No 361
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.39 E-value=7.5e-07 Score=80.26 Aligned_cols=117 Identities=20% Similarity=0.231 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEcc
Q psy7834 196 KVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGD 275 (492)
Q Consensus 196 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d 275 (492)
.+-+.+...|....-+|.+|||+-||||.++...+.++ ..+|+.||.++..+...++|++..+ ...++..+..|
T Consensus 27 rvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~----~~~~~~v~~~d 100 (183)
T PF03602_consen 27 RVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLG----LEDKIRVIKGD 100 (183)
T ss_dssp HHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-----GGGEEEEESS
T ss_pred HHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhC----CCcceeeeccC
Confidence 44455666665331368899999999999999988886 3489999999999999999999864 22358899998
Q ss_pred CCCCC----cCCCCccEEEecCcchhh---H---HHHH--HHhccCCeEEEEeCC
Q psy7834 276 GREGH----AAEGPYDVIYVGGAVHHY---P---FKLM--DQLKPGGVMWFTIGN 318 (492)
Q Consensus 276 ~~~~~----~~~~~fD~i~s~~~~~~~---~---~~~~--~~L~pgG~l~~~~~~ 318 (492)
..... ....+||+||.......- . +.+. .+|+++|.+++....
T Consensus 101 ~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 101 AFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp HHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred HHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 64322 135789999998765322 2 2333 678999999997643
No 362
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.39 E-value=8.3e-07 Score=80.67 Aligned_cols=104 Identities=17% Similarity=0.305 Sum_probs=62.1
Q ss_pred CCceEEEeccccH----HHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHH--------------Hhh-----CCCCC
Q psy7834 212 GAKVLDIGSGSGY----LTACMAHMV----GPTGKVYAVEHIEDLVAQANKSM--------------HTY-----YPNLM 264 (492)
Q Consensus 212 ~~~vLDiGcG~G~----~~~~la~~~----~~~~~v~giD~s~~~l~~a~~~~--------------~~~-----~~~~~ 264 (492)
.-+|+.+||+||. ++..+.+.. +-.-+|+|+|+|+.+++.|++-. .++ +..+.
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 4699999999996 333344421 11348999999999999998621 111 10000
Q ss_pred ----CCCcEEEEEccCCCCCcCCCCccEEEecCcchhhH--------HHHHHHhccCCeEEEE
Q psy7834 265 ----EGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYP--------FKLMDQLKPGGVMWFT 315 (492)
Q Consensus 265 ----~~~~v~~~~~d~~~~~~~~~~fD~i~s~~~~~~~~--------~~~~~~L~pgG~l~~~ 315 (492)
...+|+|.+.|+.+..+..+.||+|+|..++-.+. +.+.+.|+|||.|++.
T Consensus 112 v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp E-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred EChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 01468999999887445568899999999886554 3778999999999994
No 363
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.38 E-value=2.1e-06 Score=83.88 Aligned_cols=102 Identities=30% Similarity=0.409 Sum_probs=86.1
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccE
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDV 288 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 288 (492)
..+|.+|+|.=+|-|+++..+|+...+ +|+++|++|.+++..++|++.|+. ...+..+++|..+.....+.+|.
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v----~~~v~~i~gD~rev~~~~~~aDr 259 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKV----EGRVEPILGDAREVAPELGVADR 259 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcCc----cceeeEEeccHHHhhhccccCCE
Confidence 466999999999999999999998633 499999999999999999998752 23489999999876655588999
Q ss_pred EEecCcc--hhhHHHHHHHhccCCeEEEEe
Q psy7834 289 IYVGGAV--HHYPFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 289 i~s~~~~--~~~~~~~~~~L~pgG~l~~~~ 316 (492)
|+.+... +.+.+...+.+++||.+-+..
T Consensus 260 Iim~~p~~a~~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 260 IIMGLPKSAHEFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred EEeCCCCcchhhHHHHHHHhhcCcEEEEEe
Confidence 9998754 667778889999999998854
No 364
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.34 E-value=1.9e-06 Score=86.76 Aligned_cols=80 Identities=19% Similarity=0.213 Sum_probs=52.8
Q ss_pred CeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCC-----HHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCccc
Q psy7834 58 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHI-----PQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYD 132 (492)
Q Consensus 58 ~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~-----~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 132 (492)
.++||+|||+|.|+..|.+.. |+.+-+. +..++.|-++ |+ +..-- ..-..++|+++++||
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~-----V~t~s~a~~d~~~~qvqfaleR----Gv-----pa~~~-~~~s~rLPfp~~~fD 183 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERN-----VTTMSFAPNDEHEAQVQFALER----GV-----PAMIG-VLGSQRLPFPSNAFD 183 (506)
T ss_pred EEEEeccceeehhHHHHhhCC-----ceEEEcccccCCchhhhhhhhc----Cc-----chhhh-hhccccccCCccchh
Confidence 479999999999999999873 4444333 3455565543 33 11111 112357899999999
Q ss_pred ceeccCccc-----------ccccchhcccc
Q psy7834 133 IIHVGGSIE-----------DIPEGVRFGHI 152 (492)
Q Consensus 133 ~i~~~~~~~-----------~l~~~L~~~~l 152 (492)
+|.|+.++- ++-+.|++||+
T Consensus 184 mvHcsrc~i~W~~~~g~~l~evdRvLRpGGy 214 (506)
T PF03141_consen 184 MVHCSRCLIPWHPNDGFLLFEVDRVLRPGGY 214 (506)
T ss_pred hhhcccccccchhcccceeehhhhhhccCce
Confidence 999986543 55566677765
No 365
>KOG3191|consensus
Probab=98.34 E-value=2.5e-06 Score=74.10 Aligned_cols=101 Identities=16% Similarity=0.201 Sum_probs=76.6
Q ss_pred ccCCccccccchhhhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCC
Q psy7834 27 HMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNP 106 (492)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~ 106 (492)
.+..|-.++...-..+.+...++- -.....++|||||+|..+.+|++..+++....+.|+|+.+.+...+-++.++
T Consensus 17 dVYEPaEDTFlLlDaLekd~~eL~---~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~- 92 (209)
T KOG3191|consen 17 DVYEPAEDTFLLLDALEKDAAELK---GHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR- 92 (209)
T ss_pred hccCccchhhHHHHHHHHHHHHHh---hcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC-
Confidence 345555555555555555444433 2236789999999999999999998888999999999999988887776665
Q ss_pred CccccCceEEEecCCCCCCCCCCcccceecc
Q psy7834 107 EFVKDGRIKFVLGDGRKGYLDEAPYDIIHVG 137 (492)
Q Consensus 107 ~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~ 137 (492)
.+++.++.|...... .++.|+++++
T Consensus 93 -----~~~~~V~tdl~~~l~-~~~VDvLvfN 117 (209)
T KOG3191|consen 93 -----VHIDVVRTDLLSGLR-NESVDVLVFN 117 (209)
T ss_pred -----CccceeehhHHhhhc-cCCccEEEEC
Confidence 468999999877643 4899999874
No 366
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.34 E-value=4.8e-06 Score=75.51 Aligned_cols=114 Identities=30% Similarity=0.374 Sum_probs=77.4
Q ss_pred HHHHHHHHHHH-hccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEc
Q psy7834 196 KVHAQALEILK-DYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDG 274 (492)
Q Consensus 196 ~~~~~~~~~l~-~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~ 274 (492)
.+.+.++.-+. -++++|.+||-+|..+|.....++-.+++.|.|++++.|+......-.-+++ -+|+--+..
T Consensus 57 KLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-------R~NIiPIl~ 129 (229)
T PF01269_consen 57 KLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-------RPNIIPILE 129 (229)
T ss_dssp HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-------STTEEEEES
T ss_pred HHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-------CCceeeeec
Confidence 44444444443 2478899999999999999999999999999999999999654433322222 157888999
Q ss_pred cCCCCCc---CCCCccEEEecCcchhhH----HHHHHHhccCCeEEEEe
Q psy7834 275 DGREGHA---AEGPYDVIYVGGAVHHYP----FKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 275 d~~~~~~---~~~~fD~i~s~~~~~~~~----~~~~~~L~pgG~l~~~~ 316 (492)
|+..... .-+.+|+|++.-+-+.-. .++...||+||.+++..
T Consensus 130 DAr~P~~Y~~lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 130 DARHPEKYRMLVEMVDVIFQDVAQPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp -TTSGGGGTTTS--EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCChHHhhcccccccEEEecCCChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 9875321 135799999986654332 37778999999999865
No 367
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.32 E-value=1.4e-06 Score=85.02 Aligned_cols=88 Identities=31% Similarity=0.340 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCC
Q psy7834 43 QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR 122 (492)
Q Consensus 43 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 122 (492)
+.++.+ ...+|.+|+|..+|.|.||+.+|+... .+|+++|+|+.+++..++|++.|+++ ..+..++||+.
T Consensus 179 R~Rva~----~v~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~----~~v~~i~gD~r 248 (341)
T COG2520 179 RARVAE----LVKEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVE----GRVEPILGDAR 248 (341)
T ss_pred HHHHHh----hhcCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCcc----ceeeEEeccHH
Confidence 345555 455799999999999999999999863 34999999999999999999999985 55999999999
Q ss_pred CCCCCCCcccceeccCcc
Q psy7834 123 KGYLDEAPYDIIHVGGSI 140 (492)
Q Consensus 123 ~~~~~~~~~D~i~~~~~~ 140 (492)
+.......+|.|+.+...
T Consensus 249 ev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 249 EVAPELGVADRIIMGLPK 266 (341)
T ss_pred HhhhccccCCEEEeCCCC
Confidence 887666889999986554
No 368
>PLN02366 spermidine synthase
Probab=98.31 E-value=2.4e-06 Score=83.38 Aligned_cols=94 Identities=21% Similarity=0.222 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHH-hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEec
Q psy7834 41 FQQAMVLDDLSE-ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLG 119 (492)
Q Consensus 41 ~~~~~~~~~l~~-~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~ 119 (492)
.....++..+.- ....+++||+||||.|..+..+++.. +..+|+.||+++.+++.|++++...+.. +..++++++.+
T Consensus 75 ~~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~-~~dpRv~vi~~ 152 (308)
T PLN02366 75 CAYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVG-FDDPRVNLHIG 152 (308)
T ss_pred HHHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccc-cCCCceEEEEC
Confidence 344555554311 23467899999999999999999873 3469999999999999999987543211 23468999999
Q ss_pred CCCCCCC--CCCcccceec
Q psy7834 120 DGRKGYL--DEAPYDIIHV 136 (492)
Q Consensus 120 d~~~~~~--~~~~~D~i~~ 136 (492)
|+..... +.++||+|++
T Consensus 153 Da~~~l~~~~~~~yDvIi~ 171 (308)
T PLN02366 153 DGVEFLKNAPEGTYDAIIV 171 (308)
T ss_pred hHHHHHhhccCCCCCEEEE
Confidence 9865432 2468999987
No 369
>KOG1500|consensus
Probab=98.30 E-value=2.2e-06 Score=81.06 Aligned_cols=76 Identities=29% Similarity=0.305 Sum_probs=66.9
Q ss_pred cCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccc
Q psy7834 54 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDI 133 (492)
Q Consensus 54 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 133 (492)
-..++.|||+|||+|.++.+.+..+. .+|++||.| +|.+.|++..+.+++. ++|+.+.|.+++..++ ++.|+
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqAGA--~~vYAvEAS-~MAqyA~~Lv~~N~~~----~rItVI~GKiEdieLP-Ek~Dv 246 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQAGA--KKVYAVEAS-EMAQYARKLVASNNLA----DRITVIPGKIEDIELP-EKVDV 246 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHhCc--ceEEEEehh-HHHHHHHHHHhcCCcc----ceEEEccCccccccCc-hhccE
Confidence 35788999999999999999999864 799999984 7889999999998885 8999999999998765 78999
Q ss_pred eecc
Q psy7834 134 IHVG 137 (492)
Q Consensus 134 i~~~ 137 (492)
|++-
T Consensus 247 iISE 250 (517)
T KOG1500|consen 247 IISE 250 (517)
T ss_pred EEec
Confidence 9884
No 370
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.30 E-value=6.4e-06 Score=74.05 Aligned_cols=114 Identities=26% Similarity=0.317 Sum_probs=83.8
Q ss_pred HHHHHHHHh--ccCCCC-ceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEcc
Q psy7834 199 AQALEILKD--YLKPGA-KVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGD 275 (492)
Q Consensus 199 ~~~~~~l~~--~~~~~~-~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d 275 (492)
..+++.+.. .++... +++|||+|.|.-+..+|=.. |..+++.+|.+..-+...+.-.... +..|++++++.
T Consensus 33 ~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L-----~L~nv~v~~~R 106 (184)
T PF02527_consen 33 RHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVREL-----GLSNVEVINGR 106 (184)
T ss_dssp HHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHH-----T-SSEEEEES-
T ss_pred HHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHh-----CCCCEEEEEee
Confidence 345555532 234433 89999999999999998776 8889999999999888777777665 35689999999
Q ss_pred CCCCCcCCCCccEEEecCcc--hhhHHHHHHHhccCCeEEEEeCCC
Q psy7834 276 GREGHAAEGPYDVIYVGGAV--HHYPFKLMDQLKPGGVMWFTIGNA 319 (492)
Q Consensus 276 ~~~~~~~~~~fD~i~s~~~~--~~~~~~~~~~L~pgG~l~~~~~~~ 319 (492)
+++ .....+||+|++.++- ..+..-+...|++||++++.-++.
T Consensus 107 ~E~-~~~~~~fd~v~aRAv~~l~~l~~~~~~~l~~~G~~l~~KG~~ 151 (184)
T PF02527_consen 107 AEE-PEYRESFDVVTARAVAPLDKLLELARPLLKPGGRLLAYKGPD 151 (184)
T ss_dssp HHH-TTTTT-EEEEEEESSSSHHHHHHHHGGGEEEEEEEEEEESS-
T ss_pred ecc-cccCCCccEEEeehhcCHHHHHHHHHHhcCCCCEEEEEcCCC
Confidence 876 4456789999998764 344456778899999999876543
No 371
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.30 E-value=1.2e-05 Score=71.40 Aligned_cols=102 Identities=21% Similarity=0.264 Sum_probs=79.2
Q ss_pred CCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCC---cCCCCcc
Q psy7834 211 PGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGH---AAEGPYD 287 (492)
Q Consensus 211 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD 287 (492)
.|.++||+-+|||.++...+.++ ..+++.||.+...+...++|++..+ ...+++++..|+.... ...++||
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG--A~~~~~vE~~~~a~~~l~~N~~~l~----~~~~~~~~~~da~~~L~~~~~~~~FD 116 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG--AARVVFVEKDRKAVKILKENLKALG----LEGEARVLRNDALRALKQLGTREPFD 116 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhC----CccceEEEeecHHHHHHhcCCCCccc
Confidence 47899999999999999999886 4589999999999999999998764 2357888998876321 1223599
Q ss_pred EEEecCcch-hhHH--------HHHHHhccCCeEEEEeCC
Q psy7834 288 VIYVGGAVH-HYPF--------KLMDQLKPGGVMWFTIGN 318 (492)
Q Consensus 288 ~i~s~~~~~-~~~~--------~~~~~L~pgG~l~~~~~~ 318 (492)
+||....++ .+.+ .-..+|+|+|.+++....
T Consensus 117 lVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 117 LVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred EEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 999998775 2221 123679999999997643
No 372
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.28 E-value=1.4e-06 Score=86.81 Aligned_cols=76 Identities=24% Similarity=0.302 Sum_probs=65.4
Q ss_pred CCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCC----CCCcc
Q psy7834 56 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL----DEAPY 131 (492)
Q Consensus 56 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~~ 131 (492)
.|++|||+.|-||.+|...|..+. .+|++||+|..++++|++|.+-+|+. ..++.|+++|+++... ...+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~---~~~~~~i~~Dvf~~l~~~~~~g~~f 291 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLD---GDRHRFIVGDVFKWLRKAERRGEKF 291 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCCC---ccceeeehhhHHHHHHHHHhcCCcc
Confidence 499999999999999999999752 49999999999999999999999974 2568999999987542 24589
Q ss_pred cceec
Q psy7834 132 DIIHV 136 (492)
Q Consensus 132 D~i~~ 136 (492)
|+|++
T Consensus 292 DlIil 296 (393)
T COG1092 292 DLIIL 296 (393)
T ss_pred cEEEE
Confidence 99977
No 373
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.27 E-value=6.4e-06 Score=78.94 Aligned_cols=102 Identities=24% Similarity=0.229 Sum_probs=81.5
Q ss_pred CceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcC-CCCccEEEe
Q psy7834 213 AKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAA-EGPYDVIYV 291 (492)
Q Consensus 213 ~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~i~s 291 (492)
++||-||-|.|.+++.+.+.. +..+++.+|+++..++.+++.+........ .++++++.+|..+.... ..+||+|++
T Consensus 78 k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~-dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGAD-DPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccC-CCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 699999999999999999986 578999999999999999999876431111 57899999998754332 337999998
Q ss_pred cCcch----------hhHHHHHHHhccCCeEEEEe
Q psy7834 292 GGAVH----------HYPFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 292 ~~~~~----------~~~~~~~~~L~pgG~l~~~~ 316 (492)
...-. .+-+.+.+.|+++|+++...
T Consensus 156 D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 156 DSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred cCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 75432 23358999999999999964
No 374
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.26 E-value=1.4e-05 Score=75.87 Aligned_cols=104 Identities=16% Similarity=0.254 Sum_probs=72.6
Q ss_pred CCceEEEeccccH----HHHHHHHHhC----CCCeEEEEeCCHHHHHHHHHHH-------H--------h----hCC-CC
Q psy7834 212 GAKVLDIGSGSGY----LTACMAHMVG----PTGKVYAVEHIEDLVAQANKSM-------H--------T----YYP-NL 263 (492)
Q Consensus 212 ~~~vLDiGcG~G~----~~~~la~~~~----~~~~v~giD~s~~~l~~a~~~~-------~--------~----~~~-~~ 263 (492)
.-+|+-+||+||. ++..+.+..+ ..-+|+|.|+|..+++.|++-. + + .+. .+
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5699999999995 4555555553 2468999999999999987521 0 0 000 00
Q ss_pred ----CCCCcEEEEEccCCCCCcCCCCccEEEecCcch--------hhHHHHHHHhccCCeEEEE
Q psy7834 264 ----MEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVH--------HYPFKLMDQLKPGGVMWFT 315 (492)
Q Consensus 264 ----~~~~~v~~~~~d~~~~~~~~~~fD~i~s~~~~~--------~~~~~~~~~L~pgG~l~~~ 315 (492)
.....|.|.+.|+....+..+.||+|+|-.++- .+...++..|+|||.|++-
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 001357888888865443567899999998873 3335788999999999993
No 375
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.25 E-value=1.2e-06 Score=76.42 Aligned_cols=73 Identities=23% Similarity=0.269 Sum_probs=54.2
Q ss_pred ceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcC--CC-CccEEE
Q psy7834 214 KVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAA--EG-PYDVIY 290 (492)
Q Consensus 214 ~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~-~fD~i~ 290 (492)
.|+|+.||.|..+..+|+.+ . +|+++|+++..++.|+.|++-+| ..++++++++|+.+.... .. .||+||
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~-~--~Viaidid~~~~~~a~hNa~vYG----v~~~I~~i~gD~~~~~~~~~~~~~~D~vF 74 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF-D--RVIAIDIDPERLECAKHNAEVYG----VADNIDFICGDFFELLKRLKSNKIFDVVF 74 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-----GGGEEEEES-HHHHGGGB------SEEE
T ss_pred EEEEeccCcCHHHHHHHHhC-C--eEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEeCCHHHHHhhccccccccEEE
Confidence 69999999999999999985 3 69999999999999999999875 246899999998764322 11 289998
Q ss_pred ecC
Q psy7834 291 VGG 293 (492)
Q Consensus 291 s~~ 293 (492)
.+.
T Consensus 75 lSP 77 (163)
T PF09445_consen 75 LSP 77 (163)
T ss_dssp E--
T ss_pred ECC
Confidence 764
No 376
>PRK00536 speE spermidine synthase; Provisional
Probab=98.24 E-value=7.4e-06 Score=77.60 Aligned_cols=101 Identities=17% Similarity=0.020 Sum_probs=77.2
Q ss_pred CCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEE
Q psy7834 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVI 289 (492)
Q Consensus 210 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i 289 (492)
+..++||=||.|-|..++.+.+. +. +|+-+|+++++++.+++.+...... ...++++++.. ..+ ...++||+|
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh--~~-~v~mVeID~~Vv~~~k~~lP~~~~~-~~DpRv~l~~~-~~~--~~~~~fDVI 143 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY--DT-HVDFVQADEKILDSFISFFPHFHEV-KNNKNFTHAKQ-LLD--LDIKKYDLI 143 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc--CC-eeEEEECCHHHHHHHHHHCHHHHHh-hcCCCEEEeeh-hhh--ccCCcCCEE
Confidence 55789999999999999999987 33 8999999999999999976653321 34678888762 211 123689999
Q ss_pred EecCcc-hhhHHHHHHHhccCCeEEEEeC
Q psy7834 290 YVGGAV-HHYPFKLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 290 ~s~~~~-~~~~~~~~~~L~pgG~l~~~~~ 317 (492)
++.... ..+-..+.+.|+|||.++.+.+
T Consensus 144 IvDs~~~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 144 ICLQEPDIHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred EEcCCCChHHHHHHHHhcCCCcEEEECCC
Confidence 988543 3444589999999999999654
No 377
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=1.2e-05 Score=80.33 Aligned_cols=104 Identities=23% Similarity=0.324 Sum_probs=80.1
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCC---cCCC
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGP-TGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGH---AAEG 284 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~ 284 (492)
.++|.+|||++++.|.=|..+|+.... .+.|+++|+|+.-+...++|+++.| ..++..+..|..... ...+
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG-----~~nv~~~~~d~~~~~~~~~~~~ 228 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG-----VRNVIVVNKDARRLAELLPGGE 228 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC-----CCceEEEecccccccccccccC
Confidence 688999999999999999999998744 3456999999999999999999964 567788888865432 2233
Q ss_pred CccEEEecCcc------hh----------------------hHHHHHHHhccCCeEEEEeC
Q psy7834 285 PYDVIYVGGAV------HH----------------------YPFKLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 285 ~fD~i~s~~~~------~~----------------------~~~~~~~~L~pgG~l~~~~~ 317 (492)
+||.|+..+.. +. +.+...+.|||||+|+.++-
T Consensus 229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 69999966422 11 11256789999999999753
No 378
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.23 E-value=6.3e-06 Score=79.11 Aligned_cols=90 Identities=26% Similarity=0.278 Sum_probs=71.3
Q ss_pred hhhhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEE
Q psy7834 38 FSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFV 117 (492)
Q Consensus 38 ~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~ 117 (492)
....+..++++.+ .+.++..|||+|+|+|.+|..|++.+ .+|+++|+++.+++..+++.... ++++++
T Consensus 14 ~~~~~~~~Iv~~~--~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~~-------~~~~vi 81 (262)
T PF00398_consen 14 VDPNIADKIVDAL--DLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFASN-------PNVEVI 81 (262)
T ss_dssp EHHHHHHHHHHHH--TCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTTC-------SSEEEE
T ss_pred CCHHHHHHHHHhc--CCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhhc-------ccceee
Confidence 3445578888888 77789999999999999999999997 79999999999999999877522 689999
Q ss_pred ecCCCCCCCCC---CcccceeccCc
Q psy7834 118 LGDGRKGYLDE---APYDIIHVGGS 139 (492)
Q Consensus 118 ~~d~~~~~~~~---~~~D~i~~~~~ 139 (492)
.+|+.+..... .....|+.+..
T Consensus 82 ~~D~l~~~~~~~~~~~~~~vv~NlP 106 (262)
T PF00398_consen 82 NGDFLKWDLYDLLKNQPLLVVGNLP 106 (262)
T ss_dssp ES-TTTSCGGGHCSSSEEEEEEEET
T ss_pred ecchhccccHHhhcCCceEEEEEec
Confidence 99998876543 23445655443
No 379
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.23 E-value=2.8e-06 Score=78.98 Aligned_cols=40 Identities=28% Similarity=0.277 Sum_probs=35.3
Q ss_pred CCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q psy7834 55 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQR 96 (492)
Q Consensus 55 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~ 96 (492)
.++++|||+|||||.++..+++.. . .+|+|+|++++|+..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~g-a-~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKG-A-KEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcC-C-CEEEEEeCCHHHHHH
Confidence 477899999999999999999983 2 689999999988865
No 380
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.22 E-value=5e-06 Score=78.75 Aligned_cols=105 Identities=27% Similarity=0.353 Sum_probs=77.4
Q ss_pred CCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCc-CCC-Ccc
Q psy7834 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHA-AEG-PYD 287 (492)
Q Consensus 210 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~-~fD 287 (492)
+...+||=||-|.|..+..+.+.. +..+|+.+|+++.+++.|++.+...... ...++++++.+|+..... ..+ +||
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~-~~d~r~~i~~~Dg~~~l~~~~~~~yD 152 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEG-LDDPRVRIIIGDGRKFLKETQEEKYD 152 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTT-GGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred CCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccc-cCCCceEEEEhhhHHHHHhccCCccc
Confidence 467899999999999999998764 4568999999999999999987653211 235689999999864322 233 899
Q ss_pred EEEecCcc----------hhhHHHHHHHhccCCeEEEEe
Q psy7834 288 VIYVGGAV----------HHYPFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 288 ~i~s~~~~----------~~~~~~~~~~L~pgG~l~~~~ 316 (492)
+|++...- ..+-+.+.+.|+|||.+++..
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 99976532 122348899999999999965
No 381
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.21 E-value=5.5e-06 Score=82.93 Aligned_cols=99 Identities=14% Similarity=0.113 Sum_probs=79.0
Q ss_pred CceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcC-CCCccEEEe
Q psy7834 213 AKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAA-EGPYDVIYV 291 (492)
Q Consensus 213 ~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~i~s 291 (492)
.+|||+.||+|..++.++.+.....+|+++|+++.+++.+++|++.++ ..++++.++|+...... ..+||+|+.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~-----~~~~~v~~~Da~~~l~~~~~~fDvIdl 120 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS-----VENIEVPNEDAANVLRYRNRKFHVIDI 120 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEchhHHHHHHHhCCCCCEEEe
Confidence 589999999999999999885223589999999999999999998764 34688999998654322 357999998
Q ss_pred cCcc--hhhHHHHHHHhccCCeEEEEe
Q psy7834 292 GGAV--HHYPFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 292 ~~~~--~~~~~~~~~~L~pgG~l~~~~ 316 (492)
+..- ..+.+.+.+.+++||.|+++.
T Consensus 121 DPfGs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 121 DPFGTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CCCCCcHHHHHHHHHhcccCCEEEEEe
Confidence 7621 134467888999999999974
No 382
>PRK01581 speE spermidine synthase; Validated
Probab=98.21 E-value=3e-06 Score=83.22 Aligned_cols=83 Identities=19% Similarity=0.204 Sum_probs=61.6
Q ss_pred cCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhh--hcCCCCccccCceEEEecCCCCCC-CCCCc
Q psy7834 54 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNV--ISGNPEFVKDGRIKFVLGDGRKGY-LDEAP 130 (492)
Q Consensus 54 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~--~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~ 130 (492)
....++||++|||+|..+..+.+.. +..+|++||++++|++.|++.. .+.+-..+..++++++.+|+.+.. ...++
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~ 226 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSL 226 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCC
Confidence 3456799999999999998888763 4479999999999999999731 110000012379999999998743 33568
Q ss_pred ccceecc
Q psy7834 131 YDIIHVG 137 (492)
Q Consensus 131 ~D~i~~~ 137 (492)
||+|++.
T Consensus 227 YDVIIvD 233 (374)
T PRK01581 227 YDVIIID 233 (374)
T ss_pred ccEEEEc
Confidence 9999884
No 383
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.21 E-value=3.2e-06 Score=83.46 Aligned_cols=125 Identities=22% Similarity=0.279 Sum_probs=80.3
Q ss_pred CCcccChHHHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHh------CCCCeEEEEeCCHHHHHHHHHHHHhhCCC
Q psy7834 189 GSVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMV------GPTGKVYAVEHIEDLVAQANKSMHTYYPN 262 (492)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~------~~~~~v~giD~s~~~l~~a~~~~~~~~~~ 262 (492)
|...+...+...+.+++. ..++.+|+|-+||+|.+...+.+.. ....+++|+|+++.++..|+.++.-.+.
T Consensus 26 G~~~TP~~i~~l~~~~~~--~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~- 102 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLLN--PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI- 102 (311)
T ss_dssp GGC---HHHHHHHHHHHT--T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH-
T ss_pred ceeehHHHHHHHHHhhhh--ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc-
Confidence 344455566667777764 5677899999999999988887743 2466899999999999999988754321
Q ss_pred CCCCCcEEEEEccCCCCCcC--CCCccEEEecCcchhh---------------------------HHHHHHHhccCCeEE
Q psy7834 263 LMEGGRVQFVDGDGREGHAA--EGPYDVIYVGGAVHHY---------------------------PFKLMDQLKPGGVMW 313 (492)
Q Consensus 263 ~~~~~~v~~~~~d~~~~~~~--~~~fD~i~s~~~~~~~---------------------------~~~~~~~L~pgG~l~ 313 (492)
...+..+..+|....... ...||+|+++..+-.. ...+.+.|++||+++
T Consensus 103 --~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~ 180 (311)
T PF02384_consen 103 --DNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAA 180 (311)
T ss_dssp --HCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEE
T ss_pred --ccccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccccccee
Confidence 122346788886543322 4689999988643111 125678999999988
Q ss_pred EEeCC
Q psy7834 314 FTIGN 318 (492)
Q Consensus 314 ~~~~~ 318 (492)
+.++.
T Consensus 181 ~Ilp~ 185 (311)
T PF02384_consen 181 IILPN 185 (311)
T ss_dssp EEEEH
T ss_pred EEecc
Confidence 87653
No 384
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.19 E-value=1.6e-06 Score=78.22 Aligned_cols=94 Identities=20% Similarity=0.212 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEec
Q psy7834 40 KFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLG 119 (492)
Q Consensus 40 ~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~ 119 (492)
...++.+..+|.....++.+|||+.||||.+++...+++. .+|+.||.++..++..++|+++.+.+ .+++.+++
T Consensus 26 drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~l~~~----~~~~v~~~ 99 (183)
T PF03602_consen 26 DRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEKLGLE----DKIRVIKG 99 (183)
T ss_dssp HHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-G----GGEEEEES
T ss_pred HHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHHhCCC----cceeeecc
Confidence 4456677777742214789999999999999998877753 69999999999999999999998873 56999999
Q ss_pred CCCCCC----CCCCcccceeccCc
Q psy7834 120 DGRKGY----LDEAPYDIIHVGGS 139 (492)
Q Consensus 120 d~~~~~----~~~~~~D~i~~~~~ 139 (492)
|..... ....+||+|++.-.
T Consensus 100 d~~~~l~~~~~~~~~fDiIflDPP 123 (183)
T PF03602_consen 100 DAFKFLLKLAKKGEKFDIIFLDPP 123 (183)
T ss_dssp SHHHHHHHHHHCTS-EEEEEE--S
T ss_pred CHHHHHHhhcccCCCceEEEECCC
Confidence 965432 13678999988533
No 385
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.19 E-value=3.9e-06 Score=75.32 Aligned_cols=94 Identities=18% Similarity=0.198 Sum_probs=58.8
Q ss_pred HHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCC
Q psy7834 198 HAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGR 277 (492)
Q Consensus 198 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 277 (492)
.+.+++.+.. .+++..|.|+|||.+.++..+. ..-+|...|+-+. +-.++.+|+.
T Consensus 60 vd~iI~~l~~-~~~~~viaD~GCGdA~la~~~~----~~~~V~SfDLva~--------------------n~~Vtacdia 114 (219)
T PF05148_consen 60 VDVIIEWLKK-RPKSLVIADFGCGDAKLAKAVP----NKHKVHSFDLVAP--------------------NPRVTACDIA 114 (219)
T ss_dssp HHHHHHHHCT-S-TTS-EEEES-TT-HHHHH------S---EEEEESS-S--------------------STTEEES-TT
T ss_pred HHHHHHHHHh-cCCCEEEEECCCchHHHHHhcc----cCceEEEeeccCC--------------------CCCEEEecCc
Confidence 3667777763 3456799999999999886553 2236999997432 1236778998
Q ss_pred CCCcCCCCccEEEecCcch-----hhHHHHHHHhccCCeEEEEe
Q psy7834 278 EGHAAEGPYDVIYVGGAVH-----HYPFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 278 ~~~~~~~~fD~i~s~~~~~-----~~~~~~~~~L~pgG~l~~~~ 316 (492)
..|.++++.|++++..++. .+..|..|+|||||.|.|..
T Consensus 115 ~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAE 158 (219)
T PF05148_consen 115 NVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAE 158 (219)
T ss_dssp S-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEE
Confidence 8888899999999887763 33359999999999999963
No 386
>KOG1663|consensus
Probab=98.19 E-value=6.1e-06 Score=74.80 Aligned_cols=92 Identities=21% Similarity=0.303 Sum_probs=76.0
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCC
Q psy7834 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 123 (492)
Q Consensus 44 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 123 (492)
.++++++. ....++++||||.=||+.+...|...+++++|+++|++++..+.+.+..+..+++ ++|+++++++.+
T Consensus 62 g~fl~~li-~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~----~KI~~i~g~a~e 136 (237)
T KOG1663|consen 62 GQFLQMLI-RLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD----HKITFIEGPALE 136 (237)
T ss_pred HHHHHHHH-HHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc----ceeeeeecchhh
Confidence 34444443 3447899999999999999999999988999999999999999999999999986 899999999866
Q ss_pred CC------CCCCcccceeccCcc
Q psy7834 124 GY------LDEAPYDIIHVGGSI 140 (492)
Q Consensus 124 ~~------~~~~~~D~i~~~~~~ 140 (492)
.. ...++||.++...-.
T Consensus 137 sLd~l~~~~~~~tfDfaFvDadK 159 (237)
T KOG1663|consen 137 SLDELLADGESGTFDFAFVDADK 159 (237)
T ss_pred hHHHHHhcCCCCceeEEEEccch
Confidence 32 135789999986443
No 387
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.18 E-value=6.4e-06 Score=81.00 Aligned_cols=96 Identities=16% Similarity=0.124 Sum_probs=78.1
Q ss_pred hhhhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhC---C----------------------------Cc----
Q psy7834 38 FSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVG---K----------------------------TG---- 82 (492)
Q Consensus 38 ~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~---~----------------------------~~---- 82 (492)
+...+++-|+.+. .-.++..++|--||+|.+.+..|-... | .+
T Consensus 175 LketLAaAil~la--gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~ 252 (381)
T COG0116 175 LKETLAAAILLLA--GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGK 252 (381)
T ss_pred chHHHHHHHHHHc--CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcC
Confidence 4455666676665 667778999999999999999887751 0 11
Q ss_pred ---EEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccceeccCc
Q psy7834 83 ---KVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGS 139 (492)
Q Consensus 83 ---~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~ 139 (492)
.++|+|+++.|++.|+.|++..|+. +.|+|.++|+..+..+.+.+|+|++|-.
T Consensus 253 ~~~~~~G~Did~r~i~~Ak~NA~~AGv~----d~I~f~~~d~~~l~~~~~~~gvvI~NPP 308 (381)
T COG0116 253 ELPIIYGSDIDPRHIEGAKANARAAGVG----DLIEFKQADATDLKEPLEEYGVVISNPP 308 (381)
T ss_pred ccceEEEecCCHHHHHHHHHHHHhcCCC----ceEEEEEcchhhCCCCCCcCCEEEeCCC
Confidence 4789999999999999999999995 7899999999998765588999998533
No 388
>PRK03612 spermidine synthase; Provisional
Probab=98.17 E-value=3.2e-06 Score=89.02 Aligned_cols=82 Identities=20% Similarity=0.222 Sum_probs=61.8
Q ss_pred CCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHh--hhcCCCCccccCceEEEecCCCCCC-CCCCcc
Q psy7834 55 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN--VISGNPEFVKDGRIKFVLGDGRKGY-LDEAPY 131 (492)
Q Consensus 55 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~--~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~ 131 (492)
+++++|||+|||+|..+..+++. ++..+|+++|+++++++.|+++ ..+.+-..++.++++++.+|+.+.. ...++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 46789999999999999999875 3336999999999999999984 2221100122368999999987743 234789
Q ss_pred cceecc
Q psy7834 132 DIIHVG 137 (492)
Q Consensus 132 D~i~~~ 137 (492)
|+|+++
T Consensus 375 DvIi~D 380 (521)
T PRK03612 375 DVIIVD 380 (521)
T ss_pred CEEEEe
Confidence 999884
No 389
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.15 E-value=9.2e-06 Score=72.74 Aligned_cols=85 Identities=22% Similarity=0.312 Sum_probs=55.8
Q ss_pred hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCC----CCC
Q psy7834 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY----LDE 128 (492)
Q Consensus 53 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~ 128 (492)
...++.+|||+|||+|..++.++... ...+|+..|.++ .++..+.|++.++. ....++++...|-.+.. ...
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~--~~~~~v~v~~L~Wg~~~~~~~~~~ 117 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGS--LLDGRVSVRPLDWGDELDSDLLEP 117 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT----------EEEE--TTS-HHHHHHS-
T ss_pred hhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccc--cccccccCcEEEecCccccccccc
Confidence 56688999999999999999999983 227999999999 99999999988761 01267888887754421 234
Q ss_pred CcccceeccCccc
Q psy7834 129 APYDIIHVGGSIE 141 (492)
Q Consensus 129 ~~~D~i~~~~~~~ 141 (492)
.+||+|+.+..+.
T Consensus 118 ~~~D~IlasDv~Y 130 (173)
T PF10294_consen 118 HSFDVILASDVLY 130 (173)
T ss_dssp SSBSEEEEES--S
T ss_pred ccCCEEEEecccc
Confidence 6899999987775
No 390
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.14 E-value=2.2e-06 Score=86.32 Aligned_cols=93 Identities=18% Similarity=0.181 Sum_probs=63.7
Q ss_pred CceEEEeccccHHHHHHHHHhCCCCeEEEEe-----CCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCcc
Q psy7834 213 AKVLDIGSGSGYLTACMAHMVGPTGKVYAVE-----HIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYD 287 (492)
Q Consensus 213 ~~vLDiGcG~G~~~~~la~~~~~~~~v~giD-----~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 287 (492)
..+||+|||+|.++..|..+. |+.+- ..+..++.|.++ +.+-+--+.++ ..++++++.||
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~-----V~t~s~a~~d~~~~qvqfaleR---------Gvpa~~~~~~s-~rLPfp~~~fD 183 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERN-----VTTMSFAPNDEHEAQVQFALER---------GVPAMIGVLGS-QRLPFPSNAFD 183 (506)
T ss_pred EEEEeccceeehhHHHHhhCC-----ceEEEcccccCCchhhhhhhhc---------Ccchhhhhhcc-ccccCCccchh
Confidence 479999999999999998873 55544 344455555443 11111112222 35688889999
Q ss_pred EEEecCcc-hhhHH------HHHHHhccCCeEEEEeCCCc
Q psy7834 288 VIYVGGAV-HHYPF------KLMDQLKPGGVMWFTIGNAE 320 (492)
Q Consensus 288 ~i~s~~~~-~~~~~------~~~~~L~pgG~l~~~~~~~~ 320 (492)
+|+|..++ +|.++ ++-|+|+|||.++.+-++..
T Consensus 184 mvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 184 MVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred hhhcccccccchhcccceeehhhhhhccCceEEecCCccc
Confidence 99988765 44443 88999999999999876643
No 391
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.12 E-value=6.1e-06 Score=79.56 Aligned_cols=81 Identities=22% Similarity=0.213 Sum_probs=61.7
Q ss_pred CCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCC-CCCCcccc
Q psy7834 55 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY-LDEAPYDI 133 (492)
Q Consensus 55 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~ 133 (492)
..+++||++|||+|.++..+++.. +..+++++|+++++++.|++++...+. .+..++++++.+|+.+.. ...++||+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~-~~~~~~v~i~~~D~~~~l~~~~~~yDv 148 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAG-SYDDPRVDLQIDDGFKFLADTENTFDV 148 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcc-cccCCceEEEECchHHHHHhCCCCccE
Confidence 345699999999999999888764 347999999999999999998754321 122367899999986532 12478999
Q ss_pred eecc
Q psy7834 134 IHVG 137 (492)
Q Consensus 134 i~~~ 137 (492)
|++.
T Consensus 149 Ii~D 152 (270)
T TIGR00417 149 IIVD 152 (270)
T ss_pred EEEe
Confidence 9873
No 392
>KOG2730|consensus
Probab=98.11 E-value=2.6e-06 Score=76.22 Aligned_cols=75 Identities=27% Similarity=0.241 Sum_probs=64.0
Q ss_pred CCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCC----CCCCcc
Q psy7834 56 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY----LDEAPY 131 (492)
Q Consensus 56 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~ 131 (492)
....|+|..||.|..++..|.++ ..|++||+++.-+..|++|++-.|++ ++|+|+|||..++. +....+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~----~rItFI~GD~ld~~~~lq~~K~~~ 166 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVP----DRITFICGDFLDLASKLKADKIKY 166 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCC----ceeEEEechHHHHHHHHhhhhhee
Confidence 55789999999999999999997 79999999999999999999999996 79999999987653 233446
Q ss_pred cceecc
Q psy7834 132 DIIHVG 137 (492)
Q Consensus 132 D~i~~~ 137 (492)
|+|+.+
T Consensus 167 ~~vf~s 172 (263)
T KOG2730|consen 167 DCVFLS 172 (263)
T ss_pred eeeecC
Confidence 676654
No 393
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.10 E-value=1.5e-05 Score=73.96 Aligned_cols=78 Identities=22% Similarity=0.219 Sum_probs=67.5
Q ss_pred CeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCC---CCCCcccce
Q psy7834 58 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY---LDEAPYDII 134 (492)
Q Consensus 58 ~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~D~i 134 (492)
..+||||||.|.+...+|..- |+..++|||+...-+..|.+++.+.++ .|+.++++|+..+. +++++.|.|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~l-----~Nlri~~~DA~~~l~~~~~~~sl~~I 123 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELGL-----KNLRLLCGDAVEVLDYLIPDGSLDKI 123 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcCC-----CcEEEEcCCHHHHHHhcCCCCCeeEE
Confidence 589999999999999999995 889999999999999999999999887 69999999987653 345599999
Q ss_pred eccCccc
Q psy7834 135 HVGGSIE 141 (492)
Q Consensus 135 ~~~~~~~ 141 (492)
+.+.+-+
T Consensus 124 ~i~FPDP 130 (227)
T COG0220 124 YINFPDP 130 (227)
T ss_pred EEECCCC
Confidence 8865443
No 394
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.09 E-value=5.5e-06 Score=79.49 Aligned_cols=78 Identities=23% Similarity=0.286 Sum_probs=60.4
Q ss_pred cCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCC---CCCc
Q psy7834 54 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL---DEAP 130 (492)
Q Consensus 54 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~ 130 (492)
...+++|||+.|-||.++...+.... .+|++||.|..+++.|++|++-+++. ..+++|+++|+.+... ..++
T Consensus 121 ~~~gkrvLnlFsYTGgfsv~Aa~gGA--~~v~~VD~S~~al~~a~~N~~lNg~~---~~~~~~~~~Dvf~~l~~~~~~~~ 195 (286)
T PF10672_consen 121 YAKGKRVLNLFSYTGGFSVAAAAGGA--KEVVSVDSSKRALEWAKENAALNGLD---LDRHRFIQGDVFKFLKRLKKGGR 195 (286)
T ss_dssp HCTTCEEEEET-TTTHHHHHHHHTTE--SEEEEEES-HHHHHHHHHHHHHTT-C---CTCEEEEES-HHHHHHHHHHTT-
T ss_pred HcCCCceEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCC---ccceEEEecCHHHHHHHHhcCCC
Confidence 34789999999999999998877542 48999999999999999999998863 2579999999976431 2468
Q ss_pred ccceec
Q psy7834 131 YDIIHV 136 (492)
Q Consensus 131 ~D~i~~ 136 (492)
||+|++
T Consensus 196 fD~IIl 201 (286)
T PF10672_consen 196 FDLIIL 201 (286)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 999988
No 395
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.08 E-value=1.1e-05 Score=78.02 Aligned_cols=103 Identities=21% Similarity=0.350 Sum_probs=81.5
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCC--cCCCCc
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGH--AAEGPY 286 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~f 286 (492)
..+|.+|||+++++|.-|..++......+.|++.|+++..+...++++++.| ..++.....|..... .....|
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g-----~~~v~~~~~D~~~~~~~~~~~~f 157 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG-----VFNVIVINADARKLDPKKPESKF 157 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT------SSEEEEESHHHHHHHHHHTTTE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC-----CceEEEEeecccccccccccccc
Confidence 6789999999999999999999998778999999999999999999999864 567888888876531 223469
Q ss_pred cEEEecCcc------hh----------------------hHHHHHHHh----ccCCeEEEEe
Q psy7834 287 DVIYVGGAV------HH----------------------YPFKLMDQL----KPGGVMWFTI 316 (492)
Q Consensus 287 D~i~s~~~~------~~----------------------~~~~~~~~L----~pgG~l~~~~ 316 (492)
|.|+..... .. +.++..+.+ ||||+++.++
T Consensus 158 d~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 158 DRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp EEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred chhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 999965421 10 112567889 9999999875
No 396
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=3.5e-05 Score=69.59 Aligned_cols=93 Identities=29% Similarity=0.425 Sum_probs=71.3
Q ss_pred ccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCc------
Q psy7834 208 YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHA------ 281 (492)
Q Consensus 208 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------ 281 (492)
.+.++.+|+|+|+-+|.++..++++.++.++|+|+|+.|-- ..++|.++++|++....
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----------------~~~~V~~iq~d~~~~~~~~~l~~ 105 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----------------PIPGVIFLQGDITDEDTLEKLLE 105 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----------------cCCCceEEeeeccCccHHHHHHH
Confidence 36789999999999999999999999888899999987631 23469999999875431
Q ss_pred --CCCCccEEEecCcc--------hhhH---------HHHHHHhccCCeEEEEe
Q psy7834 282 --AEGPYDVIYVGGAV--------HHYP---------FKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 282 --~~~~fD~i~s~~~~--------~~~~---------~~~~~~L~pgG~l~~~~ 316 (492)
...++|+|+|..+- +|.. +-..++|+|||.+++.+
T Consensus 106 ~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 106 ALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred HcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 23457999988653 2221 13457999999999865
No 397
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.06 E-value=7.8e-05 Score=70.25 Aligned_cols=103 Identities=18% Similarity=0.220 Sum_probs=79.9
Q ss_pred CCCceEEEeccccHHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcE-EEEEccCCCCC---cCCCC
Q psy7834 211 PGAKVLDIGSGSGYLTACMAHMVGP-TGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRV-QFVDGDGREGH---AAEGP 285 (492)
Q Consensus 211 ~~~~vLDiGcG~G~~~~~la~~~~~-~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v-~~~~~d~~~~~---~~~~~ 285 (492)
..-+||||.||.|..........+. ..+|.-.|.|+..++..++.+++.+ ..++ +|.++|+.+.. .....
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g-----L~~i~~f~~~dAfd~~~l~~l~p~ 209 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG-----LEDIARFEQGDAFDRDSLAALDPA 209 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC-----CccceEEEecCCCCHhHhhccCCC
Confidence 3469999999999998887777633 3589999999999999999998865 3444 99999987532 12345
Q ss_pred ccEEEecCcchhhHH---------HHHHHhccCCeEEEEeCC
Q psy7834 286 YDVIYVGGAVHHYPF---------KLMDQLKPGGVMWFTIGN 318 (492)
Q Consensus 286 fD~i~s~~~~~~~~~---------~~~~~L~pgG~l~~~~~~ 318 (492)
.++++++..+.-+++ .+.+.+.|||.|+.+.-|
T Consensus 210 P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQP 251 (311)
T PF12147_consen 210 PTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQP 251 (311)
T ss_pred CCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 799988877766664 466889999999997543
No 398
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.05 E-value=2e-05 Score=72.09 Aligned_cols=112 Identities=24% Similarity=0.350 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh-------hCCCCCCCCc
Q psy7834 196 KVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHT-------YYPNLMEGGR 268 (492)
Q Consensus 196 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~-------~~~~~~~~~~ 268 (492)
.....+++.+. +.+++.++|||||.|......|... ...+.+|||+.+...+.|+...+. .+ ....+
T Consensus 29 ~~~~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g---~~~~~ 102 (205)
T PF08123_consen 29 EFVSKILDELN--LTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYG---KRPGK 102 (205)
T ss_dssp HHHHHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCT---B---E
T ss_pred HHHHHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhh---ccccc
Confidence 34455666654 7789999999999999998888776 455799999999998887654332 22 12357
Q ss_pred EEEEEccCCCCCcC---CCCccEEEecCcc--hhhH---HHHHHHhccCCeEE
Q psy7834 269 VQFVDGDGREGHAA---EGPYDVIYVGGAV--HHYP---FKLMDQLKPGGVMW 313 (492)
Q Consensus 269 v~~~~~d~~~~~~~---~~~fD~i~s~~~~--~~~~---~~~~~~L~pgG~l~ 313 (492)
+++.++|+.+.... -..-|+|++|... ..+- .+.+..||+|-+++
T Consensus 103 v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 103 VELIHGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARII 155 (205)
T ss_dssp EEEECS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEE
T ss_pred ceeeccCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEE
Confidence 88899997653211 1347999988653 1222 24556677776654
No 399
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.03 E-value=4.1e-05 Score=81.14 Aligned_cols=101 Identities=14% Similarity=0.225 Sum_probs=69.1
Q ss_pred CCcccChHHHHHHHHHHHhccC-----CCCceEEEeccccHHHHHHHHHhCC-------CCeEEEEeCCHHHHHHHHHHH
Q psy7834 189 GSVMSSPKVHAQALEILKDYLK-----PGAKVLDIGSGSGYLTACMAHMVGP-------TGKVYAVEHIEDLVAQANKSM 256 (492)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~~~~~-----~~~~vLDiGcG~G~~~~~la~~~~~-------~~~v~giD~s~~~l~~a~~~~ 256 (492)
|+..+.+.+...+++.+..... ...+|||.|||+|.+...++..... .-+++|+|+++.++..|+.++
T Consensus 4 GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 4 GTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred cccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence 4555677777888877743222 3469999999999999988877621 246899999999999999998
Q ss_pred HhhCCCCCCCCcEEEEEccCCCC---C--cCCCCccEEEecCc
Q psy7834 257 HTYYPNLMEGGRVQFVDGDGREG---H--AAEGPYDVIYVGGA 294 (492)
Q Consensus 257 ~~~~~~~~~~~~v~~~~~d~~~~---~--~~~~~fD~i~s~~~ 294 (492)
...+ ...+.+...|.... . ...+.||+|+.|..
T Consensus 84 ~~~~-----~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPP 121 (524)
T TIGR02987 84 GEFA-----LLEINVINFNSLSYVLLNIESYLDLFDIVITNPP 121 (524)
T ss_pred hhcC-----CCCceeeecccccccccccccccCcccEEEeCCC
Confidence 7642 11234454443211 1 12357999998854
No 400
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.03 E-value=7.3e-05 Score=73.68 Aligned_cols=105 Identities=18% Similarity=0.192 Sum_probs=80.1
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCC-------------------------------CC-------eEEEEeCCHHHHH
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGP-------------------------------TG-------KVYAVEHIEDLVA 250 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~-------------------------------~~-------~v~giD~s~~~l~ 250 (492)
.+++..++|-=||+|.+.+..|.+... .+ .++|+|+++.|++
T Consensus 189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~ 268 (381)
T COG0116 189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE 268 (381)
T ss_pred CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence 456689999999999999998877521 11 3779999999999
Q ss_pred HHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEEecCcc--------------hhhHHHHHHHhccCCeEEEEe
Q psy7834 251 QANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAV--------------HHYPFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 251 ~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~s~~~~--------------~~~~~~~~~~L~pgG~l~~~~ 316 (492)
.|+.|++++| ..+.|+|.++|+..+..+.+.+|+|+||... +.+-+.+.+.++-.++.+|+.
T Consensus 269 ~Ak~NA~~AG----v~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 269 GAKANARAAG----VGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHHHhcC----CCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 9999999987 3567999999998765443789999999743 112235556677777777764
Q ss_pred C
Q psy7834 317 G 317 (492)
Q Consensus 317 ~ 317 (492)
.
T Consensus 345 ~ 345 (381)
T COG0116 345 S 345 (381)
T ss_pred c
Confidence 3
No 401
>KOG3045|consensus
Probab=98.01 E-value=2.1e-05 Score=72.18 Aligned_cols=91 Identities=16% Similarity=0.231 Sum_probs=67.8
Q ss_pred HHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCC
Q psy7834 199 AQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGRE 278 (492)
Q Consensus 199 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 278 (492)
+.+++.+.. .+....|.|+|||.+.++. . ..-+|+.+|+-+ .+-+++.+|+..
T Consensus 169 d~ii~~ik~-r~~~~vIaD~GCGEakiA~---~---~~~kV~SfDL~a--------------------~~~~V~~cDm~~ 221 (325)
T KOG3045|consen 169 DVIIRKIKR-RPKNIVIADFGCGEAKIAS---S---ERHKVHSFDLVA--------------------VNERVIACDMRN 221 (325)
T ss_pred HHHHHHHHh-CcCceEEEecccchhhhhh---c---cccceeeeeeec--------------------CCCceeeccccC
Confidence 556666652 2445689999999998876 1 233599999632 134678889999
Q ss_pred CCcCCCCccEEEecCcc-----hhhHHHHHHHhccCCeEEEEe
Q psy7834 279 GHAAEGPYDVIYVGGAV-----HHYPFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 279 ~~~~~~~fD~i~s~~~~-----~~~~~~~~~~L~pgG~l~~~~ 316 (492)
.+.++++.|++++..++ ..+..+..|+|+|||.|+|..
T Consensus 222 vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 222 VPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred CcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEe
Confidence 88899999999877655 334459999999999999953
No 402
>KOG2187|consensus
Probab=97.99 E-value=2.1e-05 Score=79.29 Aligned_cols=115 Identities=19% Similarity=0.238 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEcc
Q psy7834 196 KVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGD 275 (492)
Q Consensus 196 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d 275 (492)
.++..+-+++. ++.+..++|+.||||.++..+|+.+. +|+|++++++.++-|+.|+..+| ..|.+|++|-
T Consensus 370 vLys~i~e~~~--l~~~k~llDv~CGTG~iglala~~~~---~ViGvEi~~~aV~dA~~nA~~Ng-----isNa~Fi~gq 439 (534)
T KOG2187|consen 370 VLYSTIGEWAG--LPADKTLLDVCCGTGTIGLALARGVK---RVIGVEISPDAVEDAEKNAQING-----ISNATFIVGQ 439 (534)
T ss_pred HHHHHHHHHhC--CCCCcEEEEEeecCCceehhhhcccc---ceeeeecChhhcchhhhcchhcC-----ccceeeeecc
Confidence 34445555554 67789999999999999999999764 59999999999999999999874 5699999995
Q ss_pred CCCCCcC--C---CCcc-EEEecC---cchhhHHHHHHHhc-cCCeEEEEeCCCc
Q psy7834 276 GREGHAA--E---GPYD-VIYVGG---AVHHYPFKLMDQLK-PGGVMWFTIGNAE 320 (492)
Q Consensus 276 ~~~~~~~--~---~~fD-~i~s~~---~~~~~~~~~~~~L~-pgG~l~~~~~~~~ 320 (492)
+++.... . .+=+ +++++. .+|...-...+..+ |-=.++++|.+.+
T Consensus 440 aE~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~~t 494 (534)
T KOG2187|consen 440 AEDLFPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVSCNPHT 494 (534)
T ss_pred hhhccchhcccCCCCCceEEEECCCcccccHHHHHHHHhccCccceEEEEcCHHH
Confidence 5443321 1 1234 344443 33433333334444 7777888876543
No 403
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.98 E-value=3.1e-05 Score=68.83 Aligned_cols=95 Identities=19% Similarity=0.274 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecC
Q psy7834 41 FQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGD 120 (492)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 120 (492)
..++.+..++...-.+|.++||+.+|+|.+++...+... .+++.||.+...+...++|++..+++ .+++.+.+|
T Consensus 28 rVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l~~~----~~~~~~~~d 101 (187)
T COG0742 28 RVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKALGLE----GEARVLRND 101 (187)
T ss_pred HHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHhCCc----cceEEEeec
Confidence 335566666632125789999999999999999988854 79999999999999999999888865 789999999
Q ss_pred CCCCC--CC-CCcccceeccCccc
Q psy7834 121 GRKGY--LD-EAPYDIIHVGGSIE 141 (492)
Q Consensus 121 ~~~~~--~~-~~~~D~i~~~~~~~ 141 (492)
+.... .. .++||+|+..-..+
T Consensus 102 a~~~L~~~~~~~~FDlVflDPPy~ 125 (187)
T COG0742 102 ALRALKQLGTREPFDLVFLDPPYA 125 (187)
T ss_pred HHHHHHhcCCCCcccEEEeCCCCc
Confidence 88541 22 23599998865443
No 404
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.96 E-value=4.8e-05 Score=69.61 Aligned_cols=96 Identities=26% Similarity=0.273 Sum_probs=76.0
Q ss_pred CCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCC-ccEEE
Q psy7834 212 GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGP-YDVIY 290 (492)
Q Consensus 212 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~i~ 290 (492)
+.+++|||+|.|.-+..+|=. .|..+|+-+|....-+.--+.-..+. +.+|++++++.+++.... .. ||+|.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~-~p~~~vtLles~~Kk~~FL~~~~~eL-----~L~nv~i~~~RaE~~~~~-~~~~D~vt 140 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIA-FPDLKVTLLESLGKKIAFLREVKKEL-----GLENVEIVHGRAEEFGQE-KKQYDVVT 140 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHh-ccCCcEEEEccCchHHHHHHHHHHHh-----CCCCeEEehhhHhhcccc-cccCcEEE
Confidence 589999999999999999844 47888999999888777766666654 457899999998765432 23 99999
Q ss_pred ecCc--chhhHHHHHHHhccCCeEEE
Q psy7834 291 VGGA--VHHYPFKLMDQLKPGGVMWF 314 (492)
Q Consensus 291 s~~~--~~~~~~~~~~~L~pgG~l~~ 314 (492)
|.+. +..+.+-+...+|+||.+++
T Consensus 141 sRAva~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 141 SRAVASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred eehccchHHHHHHHHHhcccCCcchh
Confidence 8864 45666678889999998765
No 405
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.96 E-value=1.6e-05 Score=71.41 Aligned_cols=74 Identities=23% Similarity=0.252 Sum_probs=62.0
Q ss_pred eEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccceeccC
Q psy7834 59 KVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGG 138 (492)
Q Consensus 59 ~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~ 138 (492)
+++|+|+|.|+.++.||=.. |+.+++.+|.+..-+...+.-..+.++ +|++.+++.+++ .....+||+|++-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L-----~nv~v~~~R~E~-~~~~~~fd~v~aRA 123 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGL-----SNVEVINGRAEE-PEYRESFDVVTARA 123 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT------SSEEEEES-HHH-TTTTT-EEEEEEES
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCC-----CCEEEEEeeecc-cccCCCccEEEeeh
Confidence 79999999999999999987 778999999999988888888888888 799999999998 45568999998843
Q ss_pred c
Q psy7834 139 S 139 (492)
Q Consensus 139 ~ 139 (492)
.
T Consensus 124 v 124 (184)
T PF02527_consen 124 V 124 (184)
T ss_dssp S
T ss_pred h
Confidence 3
No 406
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.96 E-value=6.5e-05 Score=72.13 Aligned_cols=91 Identities=23% Similarity=0.296 Sum_probs=71.8
Q ss_pred cChHHHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEE
Q psy7834 193 SSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFV 272 (492)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~ 272 (492)
..+.+.+.+++.+. +.++..|||+|+|+|.+|..|++.. .+|+++|+++.+++..+++... .++++++
T Consensus 14 ~~~~~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~-------~~~~~vi 81 (262)
T PF00398_consen 14 VDPNIADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFAS-------NPNVEVI 81 (262)
T ss_dssp EHHHHHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTT-------CSSEEEE
T ss_pred CCHHHHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhh-------cccceee
Confidence 45667778888875 5688999999999999999999886 4799999999999999887653 3589999
Q ss_pred EccCCCCCcCC---CCccEEEecCcc
Q psy7834 273 DGDGREGHAAE---GPYDVIYVGGAV 295 (492)
Q Consensus 273 ~~d~~~~~~~~---~~fD~i~s~~~~ 295 (492)
.+|+....... .....|++|...
T Consensus 82 ~~D~l~~~~~~~~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 82 NGDFLKWDLYDLLKNQPLLVVGNLPY 107 (262)
T ss_dssp ES-TTTSCGGGHCSSSEEEEEEEETG
T ss_pred ecchhccccHHhhcCCceEEEEEecc
Confidence 99997654332 356678887655
No 407
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.94 E-value=2.5e-05 Score=67.57 Aligned_cols=59 Identities=22% Similarity=0.262 Sum_probs=51.6
Q ss_pred eEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCC
Q psy7834 59 KVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 123 (492)
Q Consensus 59 ~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 123 (492)
++||+|||+|.++..+++.. +..+|+++|.++.+.+.++++.+.+++ .++++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~-----~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNL-----PNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCC-----CcEEEEEeeeeC
Confidence 48999999999999999985 556999999999999999999988776 578888877654
No 408
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.93 E-value=9.5e-05 Score=72.34 Aligned_cols=109 Identities=11% Similarity=0.169 Sum_probs=75.3
Q ss_pred HHHHhccCCCCceEEEeccccHHHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEE--EEccCC
Q psy7834 203 EILKDYLKPGAKVLDIGSGSGYLTACMAHMVG---PTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQF--VDGDGR 277 (492)
Q Consensus 203 ~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~--~~~d~~ 277 (492)
..+...++++..++|+|||+|.-+..|.+.+. ...+++++|+|.++++.+.+++... ..+.+++ +++|..
T Consensus 68 ~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~-----~~p~l~v~~l~gdy~ 142 (319)
T TIGR03439 68 SDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG-----NFSHVRCAGLLGTYD 142 (319)
T ss_pred HHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc-----cCCCeEEEEEEecHH
Confidence 33344567788999999999998887766652 2357999999999999999998721 1244555 888875
Q ss_pred CCC----cC--CCCccEEEec-CcchhhH--------HHHHH-HhccCCeEEEEe
Q psy7834 278 EGH----AA--EGPYDVIYVG-GAVHHYP--------FKLMD-QLKPGGVMWFTI 316 (492)
Q Consensus 278 ~~~----~~--~~~fD~i~s~-~~~~~~~--------~~~~~-~L~pgG~l~~~~ 316 (492)
+.. .+ .....++++- .++.++. .++.+ .|+|||.|++.+
T Consensus 143 ~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 143 DGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred HHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 431 11 2235666543 4554443 36677 899999999965
No 409
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.92 E-value=2.2e-05 Score=71.82 Aligned_cols=114 Identities=22% Similarity=0.233 Sum_probs=80.9
Q ss_pred ccccccccccCCcccCCccccccchhhhHHHHHHHHHHH-h-cCC-CCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCC
Q psy7834 14 PYANCITNIGYGAHMQAPFQDNTKFSKFQQAMVLDDLSE-E-LTE-GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHI 90 (492)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~-~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~ 90 (492)
.|.+...-|+-....+++.. ..+.+.+-+++.+.. . ... +++++|||+|.|+.++.||-.. |+.+|+-+|..
T Consensus 26 ~Y~~lL~~wN~~~NLt~~~~----~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~ 100 (215)
T COG0357 26 AYVELLLKWNKAYNLTAIRD----PEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESL 100 (215)
T ss_pred HHHHHHHHhhHhcCCCCCCC----HHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhc-cCCcEEEEccC
Confidence 44555555554445555544 233344445544422 1 222 5899999999999999999554 66889999999
Q ss_pred HHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccceecc
Q psy7834 91 PQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVG 137 (492)
Q Consensus 91 ~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~ 137 (492)
..-+...+.-..+.++ +|++++++.+++.......||+|++-
T Consensus 101 ~Kk~~FL~~~~~eL~L-----~nv~i~~~RaE~~~~~~~~~D~vtsR 142 (215)
T COG0357 101 GKKIAFLREVKKELGL-----ENVEIVHGRAEEFGQEKKQYDVVTSR 142 (215)
T ss_pred chHHHHHHHHHHHhCC-----CCeEEehhhHhhcccccccCcEEEee
Confidence 9888888888888888 79999999999986432229999873
No 410
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.92 E-value=1.1e-05 Score=73.00 Aligned_cols=90 Identities=26% Similarity=0.409 Sum_probs=59.8
Q ss_pred CCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCC--------cC-
Q psy7834 212 GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGH--------AA- 282 (492)
Q Consensus 212 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--------~~- 282 (492)
+.+|||+||++|.++..+.++.++.++|+|+|+.+. . ...++.++++|..+.. ..
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~-------~~~~~~~i~~d~~~~~~~~~i~~~~~~ 87 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------D-------PLQNVSFIQGDITNPENIKDIRKLLPE 87 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------G-------S-TTEEBTTGGGEEEEHSHHGGGSHGT
T ss_pred ccEEEEcCCcccceeeeeeecccccceEEEEecccc---------c-------cccceeeeecccchhhHHHhhhhhccc
Confidence 489999999999999999998766789999999876 0 1134666666653210 11
Q ss_pred -CCCccEEEecCcch--------hhH---------HHHHHHhccCCeEEEEeC
Q psy7834 283 -EGPYDVIYVGGAVH--------HYP---------FKLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 283 -~~~fD~i~s~~~~~--------~~~---------~~~~~~L~pgG~l~~~~~ 317 (492)
.++||+|+|..+.. +.. .-+.+.|+|||.+++.+-
T Consensus 88 ~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 88 SGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp TTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred cccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 26899999987321 111 133577999999998653
No 411
>KOG1331|consensus
Probab=97.91 E-value=1.1e-05 Score=75.49 Aligned_cols=96 Identities=23% Similarity=0.344 Sum_probs=77.1
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccE
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDV 288 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 288 (492)
...|..++|+|||.|..+.. .|...++|.|++...+..|++. .......+|+...+..+.+||.
T Consensus 43 ~~~gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~~l~~~ak~~-----------~~~~~~~ad~l~~p~~~~s~d~ 106 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCTGLLGGAKRS-----------GGDNVCRADALKLPFREESFDA 106 (293)
T ss_pred cCCcceeeecccCCcccCcC-----CCcceeeecchhhhhccccccC-----------CCceeehhhhhcCCCCCCcccc
Confidence 45689999999999976532 2555799999999998887642 1125778899888888899999
Q ss_pred EEecCcchhhHH---------HHHHHhccCCeEEEEeCCCc
Q psy7834 289 IYVGGAVHHYPF---------KLMDQLKPGGVMWFTIGNAE 320 (492)
Q Consensus 289 i~s~~~~~~~~~---------~~~~~L~pgG~l~~~~~~~~ 320 (492)
+++.+++||+.. ++.+.|+|||...+.++...
T Consensus 107 ~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 107 ALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 999999999973 78899999999888776544
No 412
>KOG2940|consensus
Probab=97.91 E-value=2e-05 Score=70.96 Aligned_cols=84 Identities=18% Similarity=0.208 Sum_probs=67.8
Q ss_pred CCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccce
Q psy7834 55 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 134 (492)
Q Consensus 55 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i 134 (492)
+....++|||||.|..+..|.... -.+++-+|.|-.|++.++.-- ..++ .+....+|-+.+++.++++|+|
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~q-dp~i------~~~~~v~DEE~Ldf~ens~DLi 141 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQ-DPSI------ETSYFVGDEEFLDFKENSVDLI 141 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccC-CCce------EEEEEecchhcccccccchhhh
Confidence 355689999999999999886653 279999999999999887632 2222 4678899999999999999999
Q ss_pred eccCccc---ccccch
Q psy7834 135 HVGGSIE---DIPEGV 147 (492)
Q Consensus 135 ~~~~~~~---~l~~~L 147 (492)
+++.++| +++..+
T Consensus 142 isSlslHW~NdLPg~m 157 (325)
T KOG2940|consen 142 ISSLSLHWTNDLPGSM 157 (325)
T ss_pred hhhhhhhhhccCchHH
Confidence 9999987 555554
No 413
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.90 E-value=5.6e-05 Score=71.71 Aligned_cols=78 Identities=24% Similarity=0.391 Sum_probs=63.2
Q ss_pred hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCccc
Q psy7834 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYD 132 (492)
Q Consensus 53 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 132 (492)
+..+..+|+|||+|+|.++..+++.. |+.+++..|. +..++.+++ . ++++++.+|.+ -+++. +|
T Consensus 97 d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~---~--------~rv~~~~gd~f-~~~P~--~D 160 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE---A--------DRVEFVPGDFF-DPLPV--AD 160 (241)
T ss_dssp TTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH---T--------TTEEEEES-TT-TCCSS--ES
T ss_pred cccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc---c--------cccccccccHH-hhhcc--cc
Confidence 55566799999999999999999997 7789999999 788888887 1 79999999998 55554 99
Q ss_pred ceeccCcccccccc
Q psy7834 133 IIHVGGSIEDIPEG 146 (492)
Q Consensus 133 ~i~~~~~~~~l~~~ 146 (492)
++++...+|+..+.
T Consensus 161 ~~~l~~vLh~~~d~ 174 (241)
T PF00891_consen 161 VYLLRHVLHDWSDE 174 (241)
T ss_dssp EEEEESSGGGS-HH
T ss_pred ceeeehhhhhcchH
Confidence 99999999877665
No 414
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.89 E-value=3.9e-05 Score=66.29 Aligned_cols=79 Identities=28% Similarity=0.418 Sum_probs=57.5
Q ss_pred CCCCeEEEEcCcCcHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcc
Q psy7834 55 TEGKKVLDIGSGNGYFTALLAWCV---GKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPY 131 (492)
Q Consensus 55 ~~~~~vLDiG~G~G~~~~~la~~~---~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 131 (492)
.+..+|+|+|||.|+++..|+..+ .++.+|++||.++..++.|.++.++.+.. ...+.++..++...... ....
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~ 100 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSD--LEKRLSFIQGDIADESS-SDPP 100 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcch--hhccchhhccchhhhcc-cCCC
Confidence 567899999999999999999932 24479999999999999999988776521 01457777777654432 3344
Q ss_pred cceec
Q psy7834 132 DIIHV 136 (492)
Q Consensus 132 D~i~~ 136 (492)
++++.
T Consensus 101 ~~~vg 105 (141)
T PF13679_consen 101 DILVG 105 (141)
T ss_pred eEEEE
Confidence 45544
No 415
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.88 E-value=3.1e-05 Score=77.55 Aligned_cols=74 Identities=16% Similarity=0.143 Sum_probs=62.4
Q ss_pred CeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCC-CCcccceec
Q psy7834 58 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLD-EAPYDIIHV 136 (492)
Q Consensus 58 ~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D~i~~ 136 (492)
.+|||+.||+|..++.++...+.-.+|+++|+++++++.+++|++.+++ .+++++++|+...... ..+||+|..
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~-----~~~~v~~~Da~~~l~~~~~~fDvIdl 120 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV-----ENIEVPNEDAANVLRYRNRKFHVIDI 120 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CcEEEEchhHHHHHHHhCCCCCEEEe
Confidence 5899999999999999999742126899999999999999999988877 5799999998776432 357999977
No 416
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.86 E-value=3.2e-05 Score=67.48 Aligned_cols=69 Identities=25% Similarity=0.377 Sum_probs=62.4
Q ss_pred CeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccceec
Q psy7834 58 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHV 136 (492)
Q Consensus 58 ~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~ 136 (492)
+.+-|+|+|+|.++...|+.. .+|++||.++.-.+.|.+|+.-.|. .|++.+.+|+..+.+ +..|.|+|
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~g~-----~n~evv~gDA~~y~f--e~ADvvic 102 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVPGD-----VNWEVVVGDARDYDF--ENADVVIC 102 (252)
T ss_pred hceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCCCC-----cceEEEecccccccc--cccceeHH
Confidence 689999999999999999986 7999999999999999999877776 799999999998877 56788887
No 417
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.81 E-value=9.1e-05 Score=73.04 Aligned_cols=106 Identities=14% Similarity=0.218 Sum_probs=67.4
Q ss_pred cccchhhhHHHHHHHHHHHhcC---CCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcC-----C
Q psy7834 34 DNTKFSKFQQAMVLDDLSEELT---EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISG-----N 105 (492)
Q Consensus 34 ~~~~~~~~~~~~~~~~l~~~~~---~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~-----~ 105 (492)
.-+.|..++.+.++......+. ++.+|||+|||-|.-........ -.+++|+|++.+.|+.|+++..+. .
T Consensus 37 ~lR~fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~ 114 (331)
T PF03291_consen 37 HLRNFNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNNS 114 (331)
T ss_dssp HHHHHHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-
T ss_pred HHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhcccccc
Confidence 3456777777777777643221 77899999999888777776642 279999999999999999887210 0
Q ss_pred CCccccCceEEEecCCCCCC----CCC--CcccceeccCccc
Q psy7834 106 PEFVKDGRIKFVLGDGRKGY----LDE--APYDIIHVGGSIE 141 (492)
Q Consensus 106 ~~~~~~~~v~~~~~d~~~~~----~~~--~~~D~i~~~~~~~ 141 (492)
-..-..-...|+.+|..... +.+ .+||+|-+-.++|
T Consensus 115 ~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalH 156 (331)
T PF03291_consen 115 KQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALH 156 (331)
T ss_dssp HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GG
T ss_pred ccccccchhheeccccccchhhhhccccCCCcceeehHHHHH
Confidence 00000024678999987532 223 4899998866664
No 418
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.81 E-value=6.9e-05 Score=64.76 Aligned_cols=58 Identities=19% Similarity=0.225 Sum_probs=49.1
Q ss_pred ceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCC
Q psy7834 214 KVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGR 277 (492)
Q Consensus 214 ~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 277 (492)
+++|+|||.|.++..+++.. +.++|+++|.++.+.+.++++++.++ ..++++++..+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~-----~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNN-----LPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcC-----CCcEEEEEeeee
Confidence 48999999999999999875 66799999999999999999988753 346888877654
No 419
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.81 E-value=0.00023 Score=61.44 Aligned_cols=104 Identities=25% Similarity=0.429 Sum_probs=69.2
Q ss_pred CCCCceEEEeccccHHHHHHHHHh---CCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCc
Q psy7834 210 KPGAKVLDIGSGSGYLTACMAHMV---GPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPY 286 (492)
Q Consensus 210 ~~~~~vLDiGcG~G~~~~~la~~~---~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 286 (492)
.+..+|+|+|||.|+++..|+..+ .+..+|+++|.++.+++.|+++.+..+.. ...+..+..++..... .....
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~ 100 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSD--LEKRLSFIQGDIADES-SSDPP 100 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcch--hhccchhhccchhhhc-ccCCC
Confidence 557899999999999999999832 25678999999999999999988775411 1245667776654321 24456
Q ss_pred cEEEecCcchhhHHHHHH-HhccCCeEEEEe
Q psy7834 287 DVIYVGGAVHHYPFKLMD-QLKPGGVMWFTI 316 (492)
Q Consensus 287 D~i~s~~~~~~~~~~~~~-~L~pgG~l~~~~ 316 (492)
++++.-.+--.+.+.+.+ ..+|+-..++.+
T Consensus 101 ~~~vgLHaCG~Ls~~~l~~~~~~~~~~l~~v 131 (141)
T PF13679_consen 101 DILVGLHACGDLSDRALRLFIRPNARFLVLV 131 (141)
T ss_pred eEEEEeecccchHHHHHHHHHHcCCCEEEEc
Confidence 676654444444443333 334666655543
No 420
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.80 E-value=0.00029 Score=61.34 Aligned_cols=98 Identities=28% Similarity=0.333 Sum_probs=66.4
Q ss_pred eEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCC--CCcCC-CCccEEEe
Q psy7834 215 VLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGRE--GHAAE-GPYDVIYV 291 (492)
Q Consensus 215 vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~--~~~~~-~~fD~i~s 291 (492)
++|+|||+|..+ .++........++|+|+++.+++.++..... . ....+.+..+|... .+... ..||++.+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 125 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-A----GLGLVDFVVADALGGVLPFEDSASFDLVIS 125 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c----CCCceEEEEeccccCCCCCCCCCceeEEee
Confidence 999999999987 4444432223799999999999985554422 1 01116788888664 34444 47999944
Q ss_pred cCcch-----hhHHHHHHHhccCCeEEEEeCC
Q psy7834 292 GGAVH-----HYPFKLMDQLKPGGVMWFTIGN 318 (492)
Q Consensus 292 ~~~~~-----~~~~~~~~~L~pgG~l~~~~~~ 318 (492)
....+ ....++.+.|+|+|.+++....
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 126 LLVLHLLPPAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred eeehhcCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 44433 3335889999999999987543
No 421
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.80 E-value=0.00013 Score=70.90 Aligned_cols=72 Identities=21% Similarity=0.260 Sum_probs=55.8
Q ss_pred cCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccc
Q psy7834 54 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDI 133 (492)
Q Consensus 54 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 133 (492)
+.+|+++||+||++|.+|..|.+.. .+|+|||..+ |-.. +.. .++|+.+.+|........+.+|.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG---~~V~AVD~g~-l~~~----L~~-------~~~V~h~~~d~fr~~p~~~~vDw 273 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRG---MFVTAVDNGP-MAQS----LMD-------TGQVEHLRADGFKFRPPRKNVDW 273 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcC---CEEEEEechh-cCHh----hhC-------CCCEEEEeccCcccCCCCCCCCE
Confidence 4688999999999999999999985 7999999543 2211 211 27899999999887544678999
Q ss_pred eeccCcc
Q psy7834 134 IHVGGSI 140 (492)
Q Consensus 134 i~~~~~~ 140 (492)
+++..+-
T Consensus 274 vVcDmve 280 (357)
T PRK11760 274 LVCDMVE 280 (357)
T ss_pred EEEeccc
Confidence 9996543
No 422
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.79 E-value=7e-05 Score=72.42 Aligned_cols=92 Identities=21% Similarity=0.285 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEc
Q psy7834 195 PKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDG 274 (492)
Q Consensus 195 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~ 274 (492)
|-+.+.+++.|. +.+|..++|.-||.|..|..+++..+ .++|+|+|.++.+++.|++++... ..++.++++
T Consensus 6 pVll~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~------~~R~~~i~~ 76 (305)
T TIGR00006 6 SVLLDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDF------EGRVVLIHD 76 (305)
T ss_pred chhHHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhc------CCcEEEEeC
Confidence 456677788775 67888999999999999999999874 499999999999999999988753 247999999
Q ss_pred cCCCCCc-----CCCCccEEEecCcc
Q psy7834 275 DGREGHA-----AEGPYDVIYVGGAV 295 (492)
Q Consensus 275 d~~~~~~-----~~~~fD~i~s~~~~ 295 (492)
+..+... ...++|.|+.+..+
T Consensus 77 nF~~l~~~l~~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 77 NFANFFEHLDELLVTKIDGILVDLGV 102 (305)
T ss_pred CHHHHHHHHHhcCCCcccEEEEeccC
Confidence 8765321 22569999877654
No 423
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.78 E-value=4.9e-05 Score=69.60 Aligned_cols=76 Identities=30% Similarity=0.392 Sum_probs=58.2
Q ss_pred EEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccceeccCc
Q psy7834 60 VLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGS 139 (492)
Q Consensus 60 vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~ 139 (492)
|.||||--|+++..|.+.. .-.+++++|+++.-++.|++++++.++. +++++..+|+.+...+.+..|.|+.++.
T Consensus 1 vaDIGtDHgyLpi~L~~~~-~~~~~ia~DI~~gpL~~A~~~i~~~~l~----~~i~~rlgdGL~~l~~~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG-KAPKAIAVDINPGPLEKAKENIAKYGLE----DRIEVRLGDGLEVLKPGEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTT-T----TTEEEEE-SGGGG--GGG---EEEEEEE
T ss_pred CceeccchhHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcCCc----ccEEEEECCcccccCCCCCCCEEEEecC
Confidence 6899999999999999984 5468999999999999999999999985 8899999998775433344788888654
Q ss_pred c
Q psy7834 140 I 140 (492)
Q Consensus 140 ~ 140 (492)
-
T Consensus 76 G 76 (205)
T PF04816_consen 76 G 76 (205)
T ss_dssp -
T ss_pred C
Confidence 3
No 424
>KOG1269|consensus
Probab=97.78 E-value=3.6e-05 Score=76.44 Aligned_cols=107 Identities=25% Similarity=0.340 Sum_probs=85.0
Q ss_pred HHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCC
Q psy7834 204 ILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAE 283 (492)
Q Consensus 204 ~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 283 (492)
.+...+.++.+++|+|||-|.....++... ..+++|+|.++.-+.++.......+ ....-.++.+|+...++++
T Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~----l~~k~~~~~~~~~~~~fed 176 (364)
T KOG1269|consen 103 ALRESCFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAY----LDNKCNFVVADFGKMPFED 176 (364)
T ss_pred HHhhcCcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHH----hhhhcceehhhhhcCCCCc
Confidence 344457788899999999999999998763 5579999999998888776654432 1223455888988888899
Q ss_pred CCccEEEecCcchhhHH------HHHHHhccCCeEEEEe
Q psy7834 284 GPYDVIYVGGAVHHYPF------KLMDQLKPGGVMWFTI 316 (492)
Q Consensus 284 ~~fD~i~s~~~~~~~~~------~~~~~L~pgG~l~~~~ 316 (492)
+.||.+.+..+..+.++ +++++++|||..+...
T Consensus 177 n~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 177 NTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred cccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHH
Confidence 99999999888877774 8999999999999843
No 425
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.78 E-value=8.9e-05 Score=71.69 Aligned_cols=88 Identities=22% Similarity=0.225 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCC
Q psy7834 42 QQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDG 121 (492)
Q Consensus 42 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 121 (492)
+...+++.| .+.++..++|.-+|.|.-|..+++..+ +++|+|+|.++.+++.|++++...+ +++++++++.
T Consensus 8 ll~Evl~~L--~~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~~------~R~~~i~~nF 78 (305)
T TIGR00006 8 LLDEVVEGL--NIKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDFE------GRVVLIHDNF 78 (305)
T ss_pred hHHHHHHhc--CcCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhcC------CcEEEEeCCH
Confidence 367888888 778889999999999999999999874 4999999999999999999886542 6899999998
Q ss_pred CCCCC-----CCCcccceeccC
Q psy7834 122 RKGYL-----DEAPYDIIHVGG 138 (492)
Q Consensus 122 ~~~~~-----~~~~~D~i~~~~ 138 (492)
.++.. ..+++|.|++..
T Consensus 79 ~~l~~~l~~~~~~~vDgIl~DL 100 (305)
T TIGR00006 79 ANFFEHLDELLVTKIDGILVDL 100 (305)
T ss_pred HHHHHHHHhcCCCcccEEEEec
Confidence 76531 235688888753
No 426
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.77 E-value=0.00011 Score=67.29 Aligned_cols=96 Identities=22% Similarity=0.233 Sum_probs=64.7
Q ss_pred eEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEEecCc
Q psy7834 215 VLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGA 294 (492)
Q Consensus 215 vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~s~~~ 294 (492)
|.||||-.|++...|.+.. ...+++++|+++.-++.|++++..++ ...+++++.+|..+...+.+..|.|+..++
T Consensus 1 vaDIGtDHgyLpi~L~~~~-~~~~~ia~DI~~gpL~~A~~~i~~~~----l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG-KAPKAIAVDINPGPLEKAKENIAKYG----LEDRIEVRLGDGLEVLKPGEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTT-----TTTEEEEE-SGGGG--GGG---EEEEEEE
T ss_pred CceeccchhHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcC----CcccEEEEECCcccccCCCCCCCEEEEecC
Confidence 6899999999999999985 66689999999999999999999875 346899999998665444444788876543
Q ss_pred c----hhhHHHHHHHhccCCeEEEE
Q psy7834 295 V----HHYPFKLMDQLKPGGVMWFT 315 (492)
Q Consensus 295 ~----~~~~~~~~~~L~pgG~l~~~ 315 (492)
= ..+.++....++..-.|+++
T Consensus 76 GG~lI~~ILe~~~~~~~~~~~lILq 100 (205)
T PF04816_consen 76 GGELIIEILEAGPEKLSSAKRLILQ 100 (205)
T ss_dssp -HHHHHHHHHHTGGGGTT--EEEEE
T ss_pred CHHHHHHHHHhhHHHhccCCeEEEe
Confidence 2 22223333445444566664
No 427
>KOG2899|consensus
Probab=97.77 E-value=3.9e-05 Score=69.86 Aligned_cols=50 Identities=32% Similarity=0.541 Sum_probs=45.4
Q ss_pred hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhc
Q psy7834 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS 103 (492)
Q Consensus 53 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~ 103 (492)
....++.+|||||-+|.+|..+|+.+++ ..|+|+||++..|+.|+++++.
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccc
Confidence 5567889999999999999999999975 6899999999999999998865
No 428
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.76 E-value=0.00016 Score=69.62 Aligned_cols=110 Identities=19% Similarity=0.246 Sum_probs=81.6
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH--HHhhCCCCCCCCcEEEEEccCCCCCc-CCCC
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKS--MHTYYPNLMEGGRVQFVDGDGREGHA-AEGP 285 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~--~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~ 285 (492)
++...+||-+|.|.|--.+.+.+.- .-.+++-+|.+|.|++.++.+ ++..+.+....++++++..|+.+... ....
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellkyP-~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~ 365 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKYP-QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADM 365 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhCC-CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccc
Confidence 3455799999999999999998752 367999999999999999943 44444444567899999999865322 3458
Q ss_pred ccEEEecCcchhhH-----------HHHHHHhccCCeEEEEeCCC
Q psy7834 286 YDVIYVGGAVHHYP-----------FKLMDQLKPGGVMWFTIGNA 319 (492)
Q Consensus 286 fD~i~s~~~~~~~~-----------~~~~~~L~pgG~l~~~~~~~ 319 (492)
||.|+....-+.-| .-+.+.|+++|.++++.+..
T Consensus 366 fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 366 FDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred ccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 99999765432222 14568899999999976543
No 429
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.76 E-value=9.7e-05 Score=76.19 Aligned_cols=80 Identities=19% Similarity=0.186 Sum_probs=69.9
Q ss_pred hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCC-CCCcc
Q psy7834 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-DEAPY 131 (492)
Q Consensus 53 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~ 131 (492)
++.+|.+|||++||.|.=|..+|...+.++.|+++|+++.-++..++++++.|+ .++...+.|...+.. ....|
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-----~nv~v~~~D~~~~~~~~~~~f 184 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-----SNVALTHFDGRVFGAALPETF 184 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEeCchhhhhhhchhhc
Confidence 457899999999999999999999987668999999999999999999999998 789999999876532 23579
Q ss_pred cceecc
Q psy7834 132 DIIHVG 137 (492)
Q Consensus 132 D~i~~~ 137 (492)
|.|+..
T Consensus 185 D~ILvD 190 (470)
T PRK11933 185 DAILLD 190 (470)
T ss_pred CeEEEc
Confidence 999874
No 430
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.75 E-value=7.5e-05 Score=65.70 Aligned_cols=104 Identities=29% Similarity=0.351 Sum_probs=66.1
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHH----HHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCC
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLV----AQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEG 284 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l----~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 284 (492)
+++|.+|+|+=.|.|++|..++..+++.|.|+++-..+... +..+.+..... ....|++.+-.+..... ..+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e---~~~aN~e~~~~~~~A~~-~pq 121 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAARE---PVYANVEVIGKPLVALG-APQ 121 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhh---hhhhhhhhhCCcccccC-CCC
Confidence 78999999999999999999999999999999986554421 11111110000 01234444444443333 334
Q ss_pred CccEEEecCcchhh-------------HHHHHHHhccCCeEEEEe
Q psy7834 285 PYDVIYVGGAVHHY-------------PFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 285 ~fD~i~s~~~~~~~-------------~~~~~~~L~pgG~l~~~~ 316 (492)
..|+++.+...|.+ ..++++.|||||.+++..
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 56666654333322 137899999999999853
No 431
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.73 E-value=0.00022 Score=68.83 Aligned_cols=99 Identities=16% Similarity=0.180 Sum_probs=62.8
Q ss_pred CCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEEe
Q psy7834 212 GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYV 291 (492)
Q Consensus 212 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~s 291 (492)
..+|||+|||+|..+..+...++...+++++|.|+.|++.++.-++.... ....... .+......+-.+.|+|++
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~----~~~~~~~-~~~~~~~~~~~~~DLvi~ 108 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN----NRNAEWR-RVLYRDFLPFPPDDLVIA 108 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc----cccchhh-hhhhcccccCCCCcEEEE
Confidence 56999999999998888777776556899999999999999887655311 1111111 111110111223499999
Q ss_pred cCcchhhHH----HHHHHh--ccCCeEEEE
Q psy7834 292 GGAVHHYPF----KLMDQL--KPGGVMWFT 315 (492)
Q Consensus 292 ~~~~~~~~~----~~~~~L--~pgG~l~~~ 315 (492)
..++..+++ ++.+.| +-.+.|++.
T Consensus 109 s~~L~EL~~~~r~~lv~~LW~~~~~~LVlV 138 (274)
T PF09243_consen 109 SYVLNELPSAARAELVRSLWNKTAPVLVLV 138 (274)
T ss_pred ehhhhcCCchHHHHHHHHHHHhccCcEEEE
Confidence 999877764 333333 334465553
No 432
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.71 E-value=6.3e-05 Score=65.71 Aligned_cols=92 Identities=23% Similarity=0.261 Sum_probs=71.3
Q ss_pred CceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEEec
Q psy7834 213 AKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVG 292 (492)
Q Consensus 213 ~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~s~ 292 (492)
+.+.|+|+|+|.++...|+.. .+|++++.+|...+.|.+|+.-. +..|++++.+|+....+ +..|+|+|-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~-----g~~n~evv~gDA~~y~f--e~ADvvicE 103 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVP-----GDVNWEVVVGDARDYDF--ENADVVICE 103 (252)
T ss_pred hceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCC-----CCcceEEEecccccccc--cccceeHHH
Confidence 699999999999998888763 37999999999999999997543 56799999999987655 467888775
Q ss_pred Ccchh------hH--HHHHHHhccCCeEEE
Q psy7834 293 GAVHH------YP--FKLMDQLKPGGVMWF 314 (492)
Q Consensus 293 ~~~~~------~~--~~~~~~L~pgG~l~~ 314 (492)
..-.. +| +.+.+.||-.++++=
T Consensus 104 mlDTaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 104 MLDTALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HhhHHhhcccccHHHHHHHHHhhcCCcccc
Confidence 42211 11 366778888888764
No 433
>KOG1975|consensus
Probab=97.70 E-value=5.2e-05 Score=71.91 Aligned_cols=102 Identities=19% Similarity=0.187 Sum_probs=72.8
Q ss_pred ccchhhhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcC-CCCccccCc
Q psy7834 35 NTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISG-NPEFVKDGR 113 (492)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~-~~~~~~~~~ 113 (492)
=..|+.++...++... .++++.++|+|||-|.-.+..-+..- ++++|+||....|+.|+++-+.. +..--..-.
T Consensus 99 lRnfNNwIKs~LI~~y---~~~~~~~~~LgCGKGGDLlKw~kAgI--~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~ 173 (389)
T KOG1975|consen 99 LRNFNNWIKSVLINLY---TKRGDDVLDLGCGKGGDLLKWDKAGI--GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFT 173 (389)
T ss_pred hhhhhHHHHHHHHHHH---hccccccceeccCCcccHhHhhhhcc--cceEeeehhhccHHHHHHHHHHHHhhhhcccce
Confidence 3456677777777664 66888999999999999888876642 79999999999999999865432 110000024
Q ss_pred eEEEecCCCCC------CCCCCcccceeccCccc
Q psy7834 114 IKFVLGDGRKG------YLDEAPYDIIHVGGSIE 141 (492)
Q Consensus 114 v~~~~~d~~~~------~~~~~~~D~i~~~~~~~ 141 (492)
+.|+++|++.. ++++.+||+|=|-.++|
T Consensus 174 a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~H 207 (389)
T KOG1975|consen 174 AVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFH 207 (389)
T ss_pred eEEEEeccchhHHHHhccCCCCCcceeeeeeeEe
Confidence 78999998653 23344499998877776
No 434
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.70 E-value=2e-05 Score=71.37 Aligned_cols=79 Identities=28% Similarity=0.343 Sum_probs=65.3
Q ss_pred hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCC--CCCCc
Q psy7834 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY--LDEAP 130 (492)
Q Consensus 53 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~ 130 (492)
.+++|.+|||.++|-|++++..++... .+|+.||.+++.++.|.-|--..++ +. .+++.+.||+.+.- +++++
T Consensus 131 ~~~~G~rVLDtC~GLGYtAi~a~~rGA--~~VitvEkdp~VLeLa~lNPwSr~l--~~-~~i~iilGD~~e~V~~~~D~s 205 (287)
T COG2521 131 KVKRGERVLDTCTGLGYTAIEALERGA--IHVITVEKDPNVLELAKLNPWSREL--FE-IAIKIILGDAYEVVKDFDDES 205 (287)
T ss_pred ccccCCEeeeeccCccHHHHHHHHcCC--cEEEEEeeCCCeEEeeccCCCCccc--cc-cccEEecccHHHHHhcCCccc
Confidence 567899999999999999999999862 3999999999999999877544444 22 36899999997753 67889
Q ss_pred ccceec
Q psy7834 131 YDIIHV 136 (492)
Q Consensus 131 ~D~i~~ 136 (492)
||+|+.
T Consensus 206 fDaIiH 211 (287)
T COG2521 206 FDAIIH 211 (287)
T ss_pred cceEee
Confidence 999965
No 435
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.69 E-value=3.7e-05 Score=67.96 Aligned_cols=60 Identities=13% Similarity=0.252 Sum_probs=47.1
Q ss_pred EEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccceeccCcccccccc
Q psy7834 85 IGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEG 146 (492)
Q Consensus 85 ~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~~l~~~ 146 (492)
+|+|+|++|++.|+++....+.. ...+++++++|++++++++++||+|++...++.+.+.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~--~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~ 60 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS--CYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR 60 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc--CCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH
Confidence 48999999999998776432210 0147999999999999988999999999888766543
No 436
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.67 E-value=8.9e-05 Score=73.20 Aligned_cols=93 Identities=23% Similarity=0.279 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHh------CCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEE
Q psy7834 43 QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCV------GKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKF 116 (492)
Q Consensus 43 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~------~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~ 116 (492)
...|.+++ ...++.+|+|-.||+|.|...+.+.+ ....+++|+|+++.++..|+-++.-++.. ..+...
T Consensus 35 ~~l~~~~~--~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~---~~~~~i 109 (311)
T PF02384_consen 35 VDLMVKLL--NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID---NSNINI 109 (311)
T ss_dssp HHHHHHHH--TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH---CBGCEE
T ss_pred HHHHHhhh--hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc---cccccc
Confidence 66777777 67788899999999999998888743 24479999999999999998876555542 133568
Q ss_pred EecCCCCCCCC--CCcccceeccCcc
Q psy7834 117 VLGDGRKGYLD--EAPYDIIHVGGSI 140 (492)
Q Consensus 117 ~~~d~~~~~~~--~~~~D~i~~~~~~ 140 (492)
.++|....+.. ...||.|+++-..
T Consensus 110 ~~~d~l~~~~~~~~~~~D~ii~NPPf 135 (311)
T PF02384_consen 110 IQGDSLENDKFIKNQKFDVIIGNPPF 135 (311)
T ss_dssp EES-TTTSHSCTST--EEEEEEE--C
T ss_pred cccccccccccccccccccccCCCCc
Confidence 89997665443 4689999997544
No 437
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.66 E-value=1.1e-05 Score=66.03 Aligned_cols=95 Identities=32% Similarity=0.544 Sum_probs=38.0
Q ss_pred EEEeccccHHHHHHHHHhCCCC--eEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCc--CCCCccEEEe
Q psy7834 216 LDIGSGSGYLTACMAHMVGPTG--KVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHA--AEGPYDVIYV 291 (492)
Q Consensus 216 LDiGcG~G~~~~~la~~~~~~~--~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD~i~s 291 (492)
||+|+..|..+..+++...+.+ +++++|..+. .+.+++.+++.+ ...++++++++..+... ..++||+|+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~----~~~~~~~~~g~s~~~l~~~~~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAG----LSDRVEFIQGDSPDFLPSLPDGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS-------------GG----G-BTEEEEES-THHHHHHHHH--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcC----CCCeEEEEEcCcHHHHHHcCCCCEEEEEE
Confidence 6899999999999988765554 7999999995 333333333221 23479999999754321 2468999998
Q ss_pred cCcc--hhhH---HHHHHHhccCCeEEEE
Q psy7834 292 GGAV--HHYP---FKLMDQLKPGGVMWFT 315 (492)
Q Consensus 292 ~~~~--~~~~---~~~~~~L~pgG~l~~~ 315 (492)
.+.- .... ..+.+.|+|||.+++.
T Consensus 76 Dg~H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 76 DGDHSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ES---HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 8742 2222 2677889999999874
No 438
>KOG1122|consensus
Probab=97.63 E-value=0.00036 Score=68.73 Aligned_cols=103 Identities=23% Similarity=0.394 Sum_probs=81.5
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCc--CCCCc
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHA--AEGPY 286 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~f 286 (492)
.++|.||||.++-+|.-|.++|......|.|++.|.+...+...++|+.+.| ..+...+..|..+.+. ..++|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG-----v~ntiv~n~D~~ef~~~~~~~~f 313 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG-----VTNTIVSNYDGREFPEKEFPGSF 313 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC-----CCceEEEccCcccccccccCccc
Confidence 5789999999999999999999998888999999999999999999999864 5677788888765431 12389
Q ss_pred cEEEecCcc------------------------hhhHH----HHHHHhccCCeEEEEe
Q psy7834 287 DVIYVGGAV------------------------HHYPF----KLMDQLKPGGVMWFTI 316 (492)
Q Consensus 287 D~i~s~~~~------------------------~~~~~----~~~~~L~pgG~l~~~~ 316 (492)
|.|+..+.. +|+-+ ...+.+++||+|+.++
T Consensus 314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred ceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 999855421 12222 4568899999999875
No 439
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.60 E-value=0.00036 Score=66.45 Aligned_cols=100 Identities=21% Similarity=0.272 Sum_probs=61.8
Q ss_pred CCceEEEeccccHH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHH-hhCCCCCCCCcEEEEEccCCCCCcCCCCccEE
Q psy7834 212 GAKVLDIGSGSGYL-TACMAHMVGPTGKVYAVEHIEDLVAQANKSMH-TYYPNLMEGGRVQFVDGDGREGHAAEGPYDVI 289 (492)
Q Consensus 212 ~~~vLDiGcG~G~~-~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i 289 (492)
+.+|+=||||+=-+ ++.+++..++...|+++|+++++++.|++-++ ..+ ...++.|+.+|..+....-..||+|
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~----L~~~m~f~~~d~~~~~~dl~~~DvV 196 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG----LSKRMSFITADVLDVTYDLKEYDVV 196 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H----H-SSEEEEES-GGGG-GG----SEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc----ccCCeEEEecchhccccccccCCEE
Confidence 35999999998555 45666665567789999999999999998776 221 2357999999986654444689999
Q ss_pred EecCcch-------hhHHHHHHHhccCCeEEEE
Q psy7834 290 YVGGAVH-------HYPFKLMDQLKPGGVMWFT 315 (492)
Q Consensus 290 ~s~~~~~-------~~~~~~~~~L~pgG~l~~~ 315 (492)
+..+... .+.+++.+.++||.++++-
T Consensus 197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp EE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred EEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 9776542 4456888999999999884
No 440
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.59 E-value=8.6e-05 Score=67.99 Aligned_cols=91 Identities=26% Similarity=0.361 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhh-------cCCCCccccCceE
Q psy7834 43 QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVI-------SGNPEFVKDGRIK 115 (492)
Q Consensus 43 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~-------~~~~~~~~~~~v~ 115 (492)
.+.+++.+ .+.+++..+|||||.|......|-..+ -.+++|||+.+...+.|+...+ ..+.. ..+++
T Consensus 31 ~~~il~~~--~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~---~~~v~ 104 (205)
T PF08123_consen 31 VSKILDEL--NLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKR---PGKVE 104 (205)
T ss_dssp HHHHHHHT--T--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB------EEE
T ss_pred HHHHHHHh--CCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcc---cccce
Confidence 46677777 788999999999999999998887764 2469999999988777665332 22321 25788
Q ss_pred EEecCCCCCCCC---CCcccceeccCc
Q psy7834 116 FVLGDGRKGYLD---EAPYDIIHVGGS 139 (492)
Q Consensus 116 ~~~~d~~~~~~~---~~~~D~i~~~~~ 139 (492)
+.++|..+.+.. ....|+|+++..
T Consensus 105 l~~gdfl~~~~~~~~~s~AdvVf~Nn~ 131 (205)
T PF08123_consen 105 LIHGDFLDPDFVKDIWSDADVVFVNNT 131 (205)
T ss_dssp EECS-TTTHHHHHHHGHC-SEEEE--T
T ss_pred eeccCccccHhHhhhhcCCCEEEEecc
Confidence 999997654321 134577877644
No 441
>KOG3178|consensus
Probab=97.58 E-value=0.00019 Score=69.59 Aligned_cols=90 Identities=20% Similarity=0.276 Sum_probs=73.6
Q ss_pred CCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEEEe
Q psy7834 212 GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYV 291 (492)
Q Consensus 212 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~s 291 (492)
-...+|+|.|.|..+..+...+ | +|-+++.+...+..++.+.. +.|+.+-+|.... .| +-|+|+.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v~~~a~~~~---------~gV~~v~gdmfq~-~P--~~daI~m 242 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFVLAAAPYLA---------PGVEHVAGDMFQD-TP--KGDAIWM 242 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHHHhhhhhhc---------CCcceeccccccc-CC--CcCeEEE
Confidence 3789999999999999998865 5 48899999998887776653 2488889998764 33 3569999
Q ss_pred cCcchhhHH--------HHHHHhccCCeEEEEe
Q psy7834 292 GGAVHHYPF--------KLMDQLKPGGVMWFTI 316 (492)
Q Consensus 292 ~~~~~~~~~--------~~~~~L~pgG~l~~~~ 316 (492)
-+.+||+.| ++++.|+|||.+++..
T Consensus 243 kWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E 275 (342)
T KOG3178|consen 243 KWILHDWTDEDCVKILKNCKKSLPPGGKIIVVE 275 (342)
T ss_pred EeecccCChHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 999998875 7899999999999853
No 442
>PLN02823 spermine synthase
Probab=97.58 E-value=0.00015 Score=71.59 Aligned_cols=80 Identities=18% Similarity=0.251 Sum_probs=62.8
Q ss_pred CCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCC-CCCcccce
Q psy7834 56 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-DEAPYDII 134 (492)
Q Consensus 56 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~i 134 (492)
..++||.+|+|.|..+..+.+.. +..+|+.||+++++++.|++++...+- -+..++++++.+|+..... ..++||+|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~-~~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNRE-AFCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccc-cccCCceEEEEChhHHHHhhCCCCccEE
Confidence 45789999999999999888863 337999999999999999998754321 0223789999999977532 35689999
Q ss_pred ecc
Q psy7834 135 HVG 137 (492)
Q Consensus 135 ~~~ 137 (492)
++.
T Consensus 181 i~D 183 (336)
T PLN02823 181 IGD 183 (336)
T ss_pred Eec
Confidence 884
No 443
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.55 E-value=0.00023 Score=62.93 Aligned_cols=96 Identities=20% Similarity=0.217 Sum_probs=73.6
Q ss_pred CCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccEE
Q psy7834 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVI 289 (492)
Q Consensus 210 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i 289 (492)
-.|++|||+|+|+|..+...++.+ ...|++.|+.|...+..+-|++.++ -++.+...|... .+..||++
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~ang------v~i~~~~~d~~g---~~~~~Dl~ 146 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANG------VSILFTHADLIG---SPPAFDLL 146 (218)
T ss_pred cccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhcc------ceeEEeeccccC---CCcceeEE
Confidence 358999999999999999888875 3479999999999999998888865 357888888643 45679999
Q ss_pred EecCcch-----hhHHHHHHHhccCCeEEEEe
Q psy7834 290 YVGGAVH-----HYPFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 290 ~s~~~~~-----~~~~~~~~~L~pgG~l~~~~ 316 (492)
+.+..+. +..-.+++.|+..|.-++..
T Consensus 147 LagDlfy~~~~a~~l~~~~~~l~~~g~~vlvg 178 (218)
T COG3897 147 LAGDLFYNHTEADRLIPWKDRLAEAGAAVLVG 178 (218)
T ss_pred EeeceecCchHHHHHHHHHHHHHhCCCEEEEe
Confidence 8776552 21124778888888766633
No 444
>KOG4589|consensus
Probab=97.54 E-value=0.00013 Score=63.81 Aligned_cols=97 Identities=24% Similarity=0.390 Sum_probs=67.5
Q ss_pred ccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEc-cCCCCC------
Q psy7834 208 YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDG-DGREGH------ 280 (492)
Q Consensus 208 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~-d~~~~~------ 280 (492)
.+.|+.+|||+||.+|.++....++.+|+|.|.|||+-.- . ....+.++++ |+.+..
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~---------~-------p~~Ga~~i~~~dvtdp~~~~ki~ 129 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI---------E-------PPEGATIIQGNDVTDPETYRKIF 129 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec---------c-------CCCCcccccccccCCHHHHHHHH
Confidence 3678999999999999999999999999999999997421 1 1234556665 554321
Q ss_pred --cCCCCccEEEecCcch--------hhH--H-------HHHHHhccCCeEEEEeCCCc
Q psy7834 281 --AAEGPYDVIYVGGAVH--------HYP--F-------KLMDQLKPGGVMWFTIGNAE 320 (492)
Q Consensus 281 --~~~~~fD~i~s~~~~~--------~~~--~-------~~~~~L~pgG~l~~~~~~~~ 320 (492)
.++-+.|+|+|..+-. |.. + -....++|+|.+++-++...
T Consensus 130 e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 130 EALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred HhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 1345789999875321 111 1 12356789999999876554
No 445
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.54 E-value=0.00024 Score=68.56 Aligned_cols=86 Identities=17% Similarity=0.188 Sum_probs=57.7
Q ss_pred CCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccce
Q psy7834 55 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 134 (492)
Q Consensus 55 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i 134 (492)
....+|||+|||+|..+-+..+..+...+++++|.|+.|++.++...+.... ........+......+..+.|+|
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~DLv 106 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN-----NRNAEWRRVLYRDFLPFPPDDLV 106 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc-----cccchhhhhhhcccccCCCCcEE
Confidence 4567999999999998877777665557999999999999999987654321 11111111111111122334999
Q ss_pred eccCccccccc
Q psy7834 135 HVGGSIEDIPE 145 (492)
Q Consensus 135 ~~~~~~~~l~~ 145 (492)
+++.++.++.+
T Consensus 107 i~s~~L~EL~~ 117 (274)
T PF09243_consen 107 IASYVLNELPS 117 (274)
T ss_pred EEehhhhcCCc
Confidence 99998887765
No 446
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.0009 Score=59.55 Aligned_cols=113 Identities=28% Similarity=0.304 Sum_probs=82.5
Q ss_pred HHHHHHHHHHH-hccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEc
Q psy7834 196 KVHAQALEILK-DYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDG 274 (492)
Q Consensus 196 ~~~~~~~~~l~-~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~ 274 (492)
.+.+.++.-|. -.+++|.+||=+|+-+|....+++-..+ .|.+++++.|+.+....-.-+.+ -+|+--+.+
T Consensus 60 KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~-------R~Ni~PIL~ 131 (231)
T COG1889 60 KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK-------RPNIIPILE 131 (231)
T ss_pred HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh-------CCCceeeec
Confidence 44455555554 2467899999999999999999999985 89999999999886654444433 247778899
Q ss_pred cCCCCCc---CCCCccEEEecCcchhh----HHHHHHHhccCCeEEEEe
Q psy7834 275 DGREGHA---AEGPYDVIYVGGAVHHY----PFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 275 d~~~~~~---~~~~fD~i~s~~~~~~~----~~~~~~~L~pgG~l~~~~ 316 (492)
|+..... --+..|+|+..-+-+.- .+++...||+||.+++..
T Consensus 132 DA~~P~~Y~~~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 132 DARKPEKYRHLVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred ccCCcHHhhhhcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEEEE
Confidence 9864321 12568999987665433 247788999999887754
No 447
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.49 E-value=0.00053 Score=62.08 Aligned_cols=83 Identities=28% Similarity=0.374 Sum_probs=71.6
Q ss_pred hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCccc
Q psy7834 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYD 132 (492)
Q Consensus 53 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 132 (492)
-+..+.++.|+||--+++++.|.+. ++...+++.|+++.-++.|.+++.++++. ++++..++|+...-..++.+|
T Consensus 13 ~V~~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~----~~i~vr~~dgl~~l~~~d~~d 87 (226)
T COG2384 13 LVKQGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLS----ERIDVRLGDGLAVLELEDEID 87 (226)
T ss_pred HHHcCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCc----ceEEEeccCCccccCccCCcC
Confidence 4557777999999999999999998 46789999999999999999999999985 889999999866555566899
Q ss_pred ceeccCcc
Q psy7834 133 IIHVGGSI 140 (492)
Q Consensus 133 ~i~~~~~~ 140 (492)
.|+.++.-
T Consensus 88 ~ivIAGMG 95 (226)
T COG2384 88 VIVIAGMG 95 (226)
T ss_pred EEEEeCCc
Confidence 99887654
No 448
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.49 E-value=0.0005 Score=62.24 Aligned_cols=85 Identities=26% Similarity=0.374 Sum_probs=69.9
Q ss_pred HHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCC
Q psy7834 205 LKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEG 284 (492)
Q Consensus 205 l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 284 (492)
+...++.+.++.||||=.+++...|.+.. +...+++.|+++..++.|.+++.+++ ..++++...+|.......+.
T Consensus 10 va~~V~~~~~iaDIGsDHAYLp~~Lv~~~-~~~~~va~eV~~gpl~~a~~~v~~~~----l~~~i~vr~~dgl~~l~~~d 84 (226)
T COG2384 10 VANLVKQGARIADIGSDHAYLPIYLVKNN-PASTAVAGEVVPGPLESAIRNVKKNN----LSERIDVRLGDGLAVLELED 84 (226)
T ss_pred HHHHHHcCCceeeccCchhHhHHHHHhcC-CcceEEEeecccCHHHHHHHHHHhcC----CcceEEEeccCCccccCccC
Confidence 33345677889999999999999999875 77899999999999999999999875 45689999999865555555
Q ss_pred CccEEEecCc
Q psy7834 285 PYDVIYVGGA 294 (492)
Q Consensus 285 ~fD~i~s~~~ 294 (492)
.+|.|+..++
T Consensus 85 ~~d~ivIAGM 94 (226)
T COG2384 85 EIDVIVIAGM 94 (226)
T ss_pred CcCEEEEeCC
Confidence 7999886654
No 449
>KOG2361|consensus
Probab=97.45 E-value=0.00019 Score=65.57 Aligned_cols=76 Identities=18% Similarity=0.168 Sum_probs=56.9
Q ss_pred eEEEEcCcCcHHHHHHHHHhCCC--cEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCC----CCCCCCccc
Q psy7834 59 KVLDIGSGNGYFTALLAWCVGKT--GKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK----GYLDEAPYD 132 (492)
Q Consensus 59 ~vLDiG~G~G~~~~~la~~~~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~----~~~~~~~~D 132 (492)
+||+||||.|.....|.+.- ++ -+|+++|+|+.+++..+++.... . .++.--+.|+.. .++..+++|
T Consensus 74 ~ilEvGCGvGNtvfPll~~~-~n~~l~v~acDfsp~Ai~~vk~~~~~~-e-----~~~~afv~Dlt~~~~~~~~~~~svD 146 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTS-PNNRLKVYACDFSPRAIELVKKSSGYD-E-----SRVEAFVWDLTSPSLKEPPEEGSVD 146 (264)
T ss_pred hheeeccCCCcccchhhhcC-CCCCeEEEEcCCChHHHHHHHhccccc-h-----hhhcccceeccchhccCCCCcCccc
Confidence 79999999999999998874 44 69999999999999988876432 1 345444445432 345678899
Q ss_pred ceeccCccc
Q psy7834 133 IIHVGGSIE 141 (492)
Q Consensus 133 ~i~~~~~~~ 141 (492)
+|++..++.
T Consensus 147 ~it~IFvLS 155 (264)
T KOG2361|consen 147 IITLIFVLS 155 (264)
T ss_pred eEEEEEEEe
Confidence 998866653
No 450
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.44 E-value=0.00039 Score=65.49 Aligned_cols=102 Identities=26% Similarity=0.380 Sum_probs=65.4
Q ss_pred CceEEEeccc--cHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCc------CCC
Q psy7834 213 AKVLDIGSGS--GYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHA------AEG 284 (492)
Q Consensus 213 ~~vLDiGcG~--G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------~~~ 284 (492)
..+||||||- -..+-.+|+...|.++|+-+|++|-.+..++..+.... ..+..++++|+.+... -.+
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~-----~g~t~~v~aD~r~p~~iL~~p~~~~ 144 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP-----RGRTAYVQADLRDPEAILAHPEVRG 144 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T-----TSEEEEEE--TT-HHHHHCSHHHHC
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC-----CccEEEEeCCCCCHHHHhcCHHHHh
Confidence 5899999994 33567888888899999999999999999999887531 1238999999875311 112
Q ss_pred Ccc-----EEEecCcchhhHH---------HHHHHhccCCeEEEEeCCC
Q psy7834 285 PYD-----VIYVGGAVHHYPF---------KLMDQLKPGGVMWFTIGNA 319 (492)
Q Consensus 285 ~fD-----~i~s~~~~~~~~~---------~~~~~L~pgG~l~~~~~~~ 319 (492)
-+| .++....+|++++ .+.+.|.||..|+++....
T Consensus 145 ~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 145 LLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp C--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred cCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 344 4677888899875 6778899999999986543
No 451
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.42 E-value=0.0017 Score=61.77 Aligned_cols=118 Identities=23% Similarity=0.270 Sum_probs=79.1
Q ss_pred HHHHHHHHHhccC------CCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh-------------
Q psy7834 198 HAQALEILKDYLK------PGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHT------------- 258 (492)
Q Consensus 198 ~~~~~~~l~~~~~------~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~------------- 258 (492)
...+++.|....+ ...+||-=|||.|.++..+|.++. .+.|.|.|--|+-..+--+..
T Consensus 37 ~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~---~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~ 113 (270)
T PF07942_consen 37 YSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY---AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFV 113 (270)
T ss_pred HHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc---eEEEEEchHHHHHHHHHHHcccCCCCcEEEecce
Confidence 4455555554333 246999999999999999999853 599999999997554432221
Q ss_pred -----------hCCC-----------CCCCCcEEEEEccCCCCCcCC---CCccEEEecCcc---hhhH---HHHHHHhc
Q psy7834 259 -----------YYPN-----------LMEGGRVQFVDGDGREGHAAE---GPYDVIYVGGAV---HHYP---FKLMDQLK 307 (492)
Q Consensus 259 -----------~~~~-----------~~~~~~v~~~~~d~~~~~~~~---~~fD~i~s~~~~---~~~~---~~~~~~L~ 307 (492)
.-+. .....++....||+.+....+ ++||+|++..-+ +.+. +.+.++||
T Consensus 114 ~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLk 193 (270)
T PF07942_consen 114 HSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLK 193 (270)
T ss_pred ecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhc
Confidence 0000 012346778888887765544 789999877544 3333 48899999
Q ss_pred cCCeEEEEeCCC
Q psy7834 308 PGGVMWFTIGNA 319 (492)
Q Consensus 308 pgG~l~~~~~~~ 319 (492)
||| ++|-+||-
T Consensus 194 pgG-~WIN~GPL 204 (270)
T PF07942_consen 194 PGG-YWINFGPL 204 (270)
T ss_pred cCC-EEEecCCc
Confidence 999 55555553
No 452
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.40 E-value=0.00052 Score=72.81 Aligned_cols=94 Identities=15% Similarity=0.059 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhc-----CCCCeEEEEcCcCcHHHHHHHHHhC-------CCcEEEEEeCCHHHHHHHHHhhhcCCCCccc
Q psy7834 43 QAMVLDDLSEEL-----TEGKKVLDIGSGNGYFTALLAWCVG-------KTGKVIGIEHIPQLVQRATHNVISGNPEFVK 110 (492)
Q Consensus 43 ~~~~~~~l~~~~-----~~~~~vLDiG~G~G~~~~~la~~~~-------~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~ 110 (492)
...|++++.... ....+|||.+||+|.+...+++... -...++|+|+++.+++.|+.++...+.
T Consensus 13 a~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~---- 88 (524)
T TIGR02987 13 AKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL---- 88 (524)
T ss_pred HHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC----
Confidence 566666552211 1446899999999999999987652 125799999999999999998866541
Q ss_pred cCceEEEecCCCCCC-----CCCCcccceeccCccc
Q psy7834 111 DGRIKFVLGDGRKGY-----LDEAPYDIIHVGGSIE 141 (492)
Q Consensus 111 ~~~v~~~~~d~~~~~-----~~~~~~D~i~~~~~~~ 141 (492)
..+...++|..... ...+.||+|+.+-..-
T Consensus 89 -~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~ 123 (524)
T TIGR02987 89 -LEINVINFNSLSYVLLNIESYLDLFDIVITNPPYG 123 (524)
T ss_pred -CCceeeecccccccccccccccCcccEEEeCCCcc
Confidence 23445555532211 1125799999985553
No 453
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.38 E-value=0.00013 Score=67.87 Aligned_cols=74 Identities=22% Similarity=0.275 Sum_probs=54.3
Q ss_pred CCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCccccee
Q psy7834 56 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIH 135 (492)
Q Consensus 56 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~ 135 (492)
...++||||+|.|..|..++..+ .+|++.|+|+.|..+.+++ | .+.+..+ +....+.+||+|.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~k----g--------~~vl~~~--~w~~~~~~fDvIs 156 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSKK----G--------FTVLDID--DWQQTDFKFDVIS 156 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHhC----C--------CeEEehh--hhhccCCceEEEe
Confidence 45789999999999999999999 7899999999997665542 2 2333222 2222346899999
Q ss_pred ccCcccccccc
Q psy7834 136 VGGSIEDIPEG 146 (492)
Q Consensus 136 ~~~~~~~l~~~ 146 (492)
|-..++...+.
T Consensus 157 cLNvLDRc~~P 167 (265)
T PF05219_consen 157 CLNVLDRCDRP 167 (265)
T ss_pred ehhhhhccCCH
Confidence 98777644443
No 454
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.36 E-value=0.00066 Score=66.04 Aligned_cols=86 Identities=21% Similarity=0.244 Sum_probs=60.0
Q ss_pred cCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCCCccE
Q psy7834 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDV 288 (492)
Q Consensus 209 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 288 (492)
+.+|.++||+||++|.+|..+.++. ++|++||.++ |-. .+. ..++|....+|.....+..+++|.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG---~~V~AVD~g~-l~~----~L~-------~~~~V~h~~~d~fr~~p~~~~vDw 273 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRG---MFVTAVDNGP-MAQ----SLM-------DTGQVEHLRADGFKFRPPRKNVDW 273 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcC---CEEEEEechh-cCH----hhh-------CCCCEEEEeccCcccCCCCCCCCE
Confidence 4678999999999999999999874 3799999654 221 122 246899999997664433678999
Q ss_pred EEecCcch--hhHHHHHHHhccC
Q psy7834 289 IYVGGAVH--HYPFKLMDQLKPG 309 (492)
Q Consensus 289 i~s~~~~~--~~~~~~~~~L~pg 309 (492)
++|..+.. .+..-+.++|..|
T Consensus 274 vVcDmve~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 274 LVCDMVEKPARVAELMAQWLVNG 296 (357)
T ss_pred EEEecccCHHHHHHHHHHHHhcC
Confidence 99987642 2222344455443
No 455
>KOG1709|consensus
Probab=97.32 E-value=0.0018 Score=58.18 Aligned_cols=98 Identities=21% Similarity=0.393 Sum_probs=72.9
Q ss_pred CCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCC--cCCCCcc
Q psy7834 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGH--AAEGPYD 287 (492)
Q Consensus 210 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD 287 (492)
.+|.+||.||-|-|.....+-++- |..| +-|+..|+.+++-|...-. ...||..+.+-.++.. .+++.||
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~-p~~H-~IiE~hp~V~krmr~~gw~------ek~nViil~g~WeDvl~~L~d~~FD 171 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAP-PDEH-WIIEAHPDVLKRMRDWGWR------EKENVIILEGRWEDVLNTLPDKHFD 171 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcC-Ccce-EEEecCHHHHHHHHhcccc------cccceEEEecchHhhhccccccCcc
Confidence 578899999999999988876653 5444 5679999999888776543 2457888888665432 3567899
Q ss_pred EEEecCc------chhhHHHHHHHhccCCeEEEE
Q psy7834 288 VIYVGGA------VHHYPFKLMDQLKPGGVMWFT 315 (492)
Q Consensus 288 ~i~s~~~------~~~~~~~~~~~L~pgG~l~~~ 315 (492)
-|+...- +.++-+.+.++|||+|.+-+-
T Consensus 172 GI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 172 GIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred eeEeechhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 9986643 234556899999999998774
No 456
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.30 E-value=0.00081 Score=60.84 Aligned_cols=93 Identities=15% Similarity=0.092 Sum_probs=67.2
Q ss_pred HHHHHHHHhcCCCC-eEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCce-EEEecCCC
Q psy7834 45 MVLDDLSEELTEGK-KVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRI-KFVLGDGR 122 (492)
Q Consensus 45 ~~~~~l~~~~~~~~-~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v-~~~~~d~~ 122 (492)
-+++.|...+.... +|||||||||.-+..+|+.. |.-.-.--|.++......+.++.+.++ +|+ ..+..|+.
T Consensus 13 pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~-----~Nv~~P~~lDv~ 86 (204)
T PF06080_consen 13 PILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGL-----PNVRPPLALDVS 86 (204)
T ss_pred HHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCC-----cccCCCeEeecC
Confidence 34444444444444 49999999999999999998 557888899999987777777777665 343 45666766
Q ss_pred CCCCC--------CCcccceeccCccccc
Q psy7834 123 KGYLD--------EAPYDIIHVGGSIEDI 143 (492)
Q Consensus 123 ~~~~~--------~~~~D~i~~~~~~~~l 143 (492)
.-+-+ .++||+|++...+|-+
T Consensus 87 ~~~w~~~~~~~~~~~~~D~i~~~N~lHI~ 115 (204)
T PF06080_consen 87 APPWPWELPAPLSPESFDAIFCINMLHIS 115 (204)
T ss_pred CCCCccccccccCCCCcceeeehhHHHhc
Confidence 55322 3589999998777643
No 457
>KOG2730|consensus
Probab=97.30 E-value=0.00028 Score=63.43 Aligned_cols=62 Identities=24% Similarity=0.180 Sum_probs=53.9
Q ss_pred CCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCC
Q psy7834 211 PGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREG 279 (492)
Q Consensus 211 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 279 (492)
....|+|.-||.|..+..+|.++ + .|++||++|.-+..|+.|++-+|. .++|+|++||+.++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~-~--~VisIdiDPikIa~AkhNaeiYGI----~~rItFI~GD~ld~ 155 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG-P--YVIAIDIDPVKIACARHNAEVYGV----PDRITFICGDFLDL 155 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC-C--eEEEEeccHHHHHHHhccceeecC----CceeEEEechHHHH
Confidence 45799999999999999999886 3 599999999999999999988873 45899999998654
No 458
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.30 E-value=0.00034 Score=61.93 Aligned_cols=77 Identities=26% Similarity=0.373 Sum_probs=65.0
Q ss_pred hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCccc
Q psy7834 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYD 132 (492)
Q Consensus 53 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 132 (492)
..-.|++|||+|+|+|..+++-++.+. ..|++.|+.+..++..+.|.+.+++ ++.+...|+-- .+..||
T Consensus 76 etVrgkrVLd~gagsgLvaIAaa~aGA--~~v~a~d~~P~~~~ai~lNa~angv------~i~~~~~d~~g---~~~~~D 144 (218)
T COG3897 76 ETVRGKRVLDLGAGSGLVAIAAARAGA--AEVVAADIDPWLEQAIRLNAAANGV------SILFTHADLIG---SPPAFD 144 (218)
T ss_pred cccccceeeecccccChHHHHHHHhhh--HHHHhcCCChHHHHHhhcchhhccc------eeEEeeccccC---CCccee
Confidence 344789999999999999999999864 6899999999999999999988875 78999988654 457899
Q ss_pred ceeccCcc
Q psy7834 133 IIHVGGSI 140 (492)
Q Consensus 133 ~i~~~~~~ 140 (492)
+++.+...
T Consensus 145 l~LagDlf 152 (218)
T COG3897 145 LLLAGDLF 152 (218)
T ss_pred EEEeecee
Confidence 99887554
No 459
>KOG1596|consensus
Probab=97.29 E-value=0.00088 Score=61.02 Aligned_cols=99 Identities=32% Similarity=0.413 Sum_probs=75.5
Q ss_pred ccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHH----HHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCc--
Q psy7834 208 YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDL----VAQANKSMHTYYPNLMEGGRVQFVDGDGREGHA-- 281 (492)
Q Consensus 208 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~----l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-- 281 (492)
+++||.+||=+|+++|.....++..++|.+-|++++.|+.. +..|+++ +||--+.-|++....
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-----------tNiiPIiEDArhP~KYR 221 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-----------TNIIPIIEDARHPAKYR 221 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-----------CCceeeeccCCCchhee
Confidence 58999999999999999999999999999999999998754 3334332 467777778864321
Q ss_pred -CCCCccEEEecCcchhhHH----HHHHHhccCCeEEEEeC
Q psy7834 282 -AEGPYDVIYVGGAVHHYPF----KLMDQLKPGGVMWFTIG 317 (492)
Q Consensus 282 -~~~~fD~i~s~~~~~~~~~----~~~~~L~pgG~l~~~~~ 317 (492)
.-+-.|+||+.-+-+.... +..-.||+||-++++..
T Consensus 222 mlVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 222 MLVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred eeeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEEEe
Confidence 1246899998866544433 66678999999999763
No 460
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.28 E-value=0.0023 Score=61.65 Aligned_cols=86 Identities=10% Similarity=0.096 Sum_probs=48.2
Q ss_pred CCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhh-CCCCCCCCcEEEEEccCCC-C----CcCCCC
Q psy7834 212 GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTY-YPNLMEGGRVQFVDGDGRE-G----HAAEGP 285 (492)
Q Consensus 212 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~-~~~~~~~~~v~~~~~d~~~-~----~~~~~~ 285 (492)
.-++||||||.-..=-.|+.+. .+-+++|.|+++..++.|++++.++ + ...+|+++...-.. . ....+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~----L~~~I~l~~~~~~~~i~~~i~~~~e~ 177 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPN----LESRIELRKQKNPDNIFDGIIQPNER 177 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-----TTTEEEEE--ST-SSTTTSTT--S-
T ss_pred ceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhccc----cccceEEEEcCCccccchhhhcccce
Confidence 4589999999986544443333 2569999999999999999999987 3 34578887653221 1 123467
Q ss_pred ccEEEecCcchhhHHHH
Q psy7834 286 YDVIYVGGAVHHYPFKL 302 (492)
Q Consensus 286 fD~i~s~~~~~~~~~~~ 302 (492)
||+..||..++.-.+++
T Consensus 178 ~dftmCNPPFy~s~~e~ 194 (299)
T PF05971_consen 178 FDFTMCNPPFYSSQEEA 194 (299)
T ss_dssp EEEEEE-----SS----
T ss_pred eeEEecCCccccChhhh
Confidence 99999998876655433
No 461
>PRK10742 putative methyltransferase; Provisional
Probab=97.23 E-value=0.0009 Score=62.40 Aligned_cols=89 Identities=15% Similarity=0.147 Sum_probs=66.4
Q ss_pred HHHHHHHHhcCCCC--eEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCC--CCccc--cCceEEEe
Q psy7834 45 MVLDDLSEELTEGK--KVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGN--PEFVK--DGRIKFVL 118 (492)
Q Consensus 45 ~~~~~l~~~~~~~~--~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~--~~~~~--~~~v~~~~ 118 (492)
.+++.+ .+++|. +|||+.+|+|..++.++..+ ++|+++|-++.+....+++++... .++-. ..++++++
T Consensus 77 ~l~kAv--glk~g~~p~VLD~TAGlG~Da~~las~G---~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 77 AVAKAV--GIKGDYLPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred HHHHHh--CCCCCCCCEEEECCCCccHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 455555 777887 99999999999999999995 789999999998888887776631 00000 14689999
Q ss_pred cCCCCCCC-CCCcccceeccC
Q psy7834 119 GDGRKGYL-DEAPYDIIHVGG 138 (492)
Q Consensus 119 ~d~~~~~~-~~~~~D~i~~~~ 138 (492)
+|..+... ..++||+|++.-
T Consensus 152 ~da~~~L~~~~~~fDVVYlDP 172 (250)
T PRK10742 152 ASSLTALTDITPRPQVVYLDP 172 (250)
T ss_pred CcHHHHHhhCCCCCcEEEECC
Confidence 99876532 234799998743
No 462
>KOG2352|consensus
Probab=97.22 E-value=0.0033 Score=63.61 Aligned_cols=81 Identities=17% Similarity=0.258 Sum_probs=65.6
Q ss_pred cCCCC-eEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCccc
Q psy7834 54 LTEGK-KVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYD 132 (492)
Q Consensus 54 ~~~~~-~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 132 (492)
+.+-. ++|-+|||+--++..+-+.+ ...|+.+|+|+-.++.....-.+.. .-.++..+|+..+.+++++||
T Consensus 45 ~~p~~~~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~~~~------~~~~~~~~d~~~l~fedESFd 116 (482)
T KOG2352|consen 45 LSPSDFKILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNAKER------PEMQMVEMDMDQLVFEDESFD 116 (482)
T ss_pred hchhhceeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhccccCC------cceEEEEecchhccCCCccee
Confidence 34445 89999999998888887764 2689999999999888776553322 458999999999999999999
Q ss_pred ceeccCcccc
Q psy7834 133 IIHVGGSIED 142 (492)
Q Consensus 133 ~i~~~~~~~~ 142 (492)
+|+.-+.++.
T Consensus 117 iVIdkGtlDa 126 (482)
T KOG2352|consen 117 IVIDKGTLDA 126 (482)
T ss_pred EEEecCcccc
Confidence 9999877763
No 463
>PRK10742 putative methyltransferase; Provisional
Probab=97.17 E-value=0.0014 Score=61.13 Aligned_cols=93 Identities=16% Similarity=0.209 Sum_probs=68.8
Q ss_pred HHHHHHHhccCCCC--ceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCC-CC---CCcEEEEE
Q psy7834 200 QALEILKDYLKPGA--KVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNL-ME---GGRVQFVD 273 (492)
Q Consensus 200 ~~~~~l~~~~~~~~--~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~-~~---~~~v~~~~ 273 (492)
.+++.+. +++|. +|||+-+|+|..+..++.++ ++|+++|.++.+....+.++++..... .. ..++++++
T Consensus 77 ~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~G---~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 77 AVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred HHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 4444443 67777 89999999999999999874 359999999999999988887741110 01 14689999
Q ss_pred ccCCCCCc-CCCCccEEEecCcchh
Q psy7834 274 GDGREGHA-AEGPYDVIYVGGAVHH 297 (492)
Q Consensus 274 ~d~~~~~~-~~~~fD~i~s~~~~~~ 297 (492)
+|..+... ...+||+|+....+++
T Consensus 152 ~da~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 152 ASSLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred CcHHHHHhhCCCCCcEEEECCCCCC
Confidence 99754332 2347999999988765
No 464
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.14 E-value=0.0046 Score=58.58 Aligned_cols=86 Identities=17% Similarity=0.187 Sum_probs=68.3
Q ss_pred CCCeEEEEcCcCcHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCC---CCCCcc
Q psy7834 56 EGKKVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY---LDEAPY 131 (492)
Q Consensus 56 ~~~~vLDiG~G~G~~~~~la~~~~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~ 131 (492)
..-+||||-||.|.+-.-.....+. ..+|.-.|+|+..++..++.+++.|++ +-++|.++|+++.. .-+-.+
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~----~i~~f~~~dAfd~~~l~~l~p~P 210 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE----DIARFEQGDAFDRDSLAALDPAP 210 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc----cceEEEecCCCCHhHhhccCCCC
Confidence 4569999999999998888887632 369999999999999999999999994 44599999998742 113347
Q ss_pred cceeccCccccccc
Q psy7834 132 DIIHVGGSIEDIPE 145 (492)
Q Consensus 132 D~i~~~~~~~~l~~ 145 (492)
|+++.++..+-+++
T Consensus 211 ~l~iVsGL~ElF~D 224 (311)
T PF12147_consen 211 TLAIVSGLYELFPD 224 (311)
T ss_pred CEEEEecchhhCCc
Confidence 88888877654444
No 465
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.11 E-value=0.00054 Score=62.33 Aligned_cols=77 Identities=22% Similarity=0.225 Sum_probs=52.8
Q ss_pred CCCeEEEEcCcCcHHHHHH-HHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCCCCcccce
Q psy7834 56 EGKKVLDIGSGNGYFTALL-AWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 134 (492)
Q Consensus 56 ~~~~vLDiG~G~G~~~~~l-a~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i 134 (492)
...++||.|+|.|..|.-+ ...+ .+|..||.++.+++.|++++.+.+. ...++.+..+++..++..+||+|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f---~~VDlVEp~~~Fl~~a~~~l~~~~~-----~v~~~~~~gLQ~f~P~~~~YDlI 126 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVF---DEVDLVEPVEKFLEQAKEYLGKDNP-----RVGEFYCVGLQDFTPEEGKYDLI 126 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC----SEEEEEES-HHHHHHHHHHTCCGGC-----CEEEEEES-GGG----TT-EEEE
T ss_pred CcceEEecccccchhHHHHHHHhc---CEeEEeccCHHHHHHHHHHhcccCC-----CcceEEecCHhhccCCCCcEeEE
Confidence 4579999999999999755 5666 7999999999999999988765221 33678888888776666799999
Q ss_pred eccCcc
Q psy7834 135 HVGGSI 140 (492)
Q Consensus 135 ~~~~~~ 140 (492)
++-=++
T Consensus 127 W~QW~l 132 (218)
T PF05891_consen 127 WIQWCL 132 (218)
T ss_dssp EEES-G
T ss_pred EehHhh
Confidence 985333
No 466
>KOG1269|consensus
Probab=97.06 E-value=0.00043 Score=68.87 Aligned_cols=100 Identities=21% Similarity=0.252 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecC
Q psy7834 41 FQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGD 120 (492)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 120 (492)
+.+..-+.++....+++..++|+|||.|..+..++...+ .+++|++.++.-+.++.......++. ++-.++.+|
T Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~~~~~~~l~----~k~~~~~~~ 168 (364)
T KOG1269|consen 95 WIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANELAKKAYLD----NKCNFVVAD 168 (364)
T ss_pred HHhhcchHHHhhcCcccccccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHHHHHHHHhh----hhcceehhh
Confidence 444444555555778888999999999999999999864 89999999999998888887777663 556679999
Q ss_pred CCCCCCCCCcccceeccCcccccccc
Q psy7834 121 GRKGYLDEAPYDIIHVGGSIEDIPEG 146 (492)
Q Consensus 121 ~~~~~~~~~~~D~i~~~~~~~~l~~~ 146 (492)
+...+++++.||.+.+..+..+.+..
T Consensus 169 ~~~~~fedn~fd~v~~ld~~~~~~~~ 194 (364)
T KOG1269|consen 169 FGKMPFEDNTFDGVRFLEVVCHAPDL 194 (364)
T ss_pred hhcCCCCccccCcEEEEeecccCCcH
Confidence 99999999999999997776655444
No 467
>KOG3987|consensus
Probab=97.05 E-value=0.00012 Score=65.03 Aligned_cols=109 Identities=21% Similarity=0.202 Sum_probs=70.2
Q ss_pred cccChHHHHHHHHHH-HhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcE
Q psy7834 191 VMSSPKVHAQALEIL-KDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRV 269 (492)
Q Consensus 191 ~~~~~~~~~~~~~~l-~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v 269 (492)
.+.++...++.+..= ..+-..+.++||+|+|.|..+..++..+. +|++.+.|..|..+.++.- -||
T Consensus 91 FifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~kk~----------ynV 157 (288)
T KOG3987|consen 91 FIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKKKN----------YNV 157 (288)
T ss_pred EEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhhcC----------Cce
Confidence 445665555544332 11223457999999999999999998763 5999999999988765431 122
Q ss_pred EEEEccCCCCCcCCCCccEEEecCcch------hhHHHHHHHhcc-CCeEEEEe
Q psy7834 270 QFVDGDGREGHAAEGPYDVIYVGGAVH------HYPFKLMDQLKP-GGVMWFTI 316 (492)
Q Consensus 270 ~~~~~d~~~~~~~~~~fD~i~s~~~~~------~~~~~~~~~L~p-gG~l~~~~ 316 (492)
+- ..+....+-+||+|.+-..+. .+.+.+..+|+| +|+++++.
T Consensus 158 --l~--~~ew~~t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 158 --LT--EIEWLQTDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred --ee--ehhhhhcCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 11 111111234699997765543 223478889998 99988863
No 468
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.02 E-value=0.0014 Score=63.52 Aligned_cols=82 Identities=23% Similarity=0.298 Sum_probs=69.4
Q ss_pred hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCC--CCCCc
Q psy7834 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY--LDEAP 130 (492)
Q Consensus 53 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~ 130 (492)
.+.++.+|||++++.|.=+..++...+..+.|++.|+++.-++..++++++.|. .++...+.|..... .....
T Consensus 82 ~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-----~~v~~~~~D~~~~~~~~~~~~ 156 (283)
T PF01189_consen 82 DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-----FNVIVINADARKLDPKKPESK 156 (283)
T ss_dssp TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT------SSEEEEESHHHHHHHHHHTTT
T ss_pred cccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC-----ceEEEEeeccccccccccccc
Confidence 778999999999999999999999986679999999999999999999999998 78888888876652 22346
Q ss_pred ccceeccCc
Q psy7834 131 YDIIHVGGS 139 (492)
Q Consensus 131 ~D~i~~~~~ 139 (492)
||.|+....
T Consensus 157 fd~VlvDaP 165 (283)
T PF01189_consen 157 FDRVLVDAP 165 (283)
T ss_dssp EEEEEEECS
T ss_pred cchhhcCCC
Confidence 999988533
No 469
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.02 E-value=0.0029 Score=60.84 Aligned_cols=78 Identities=24% Similarity=0.351 Sum_probs=64.0
Q ss_pred CeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCCC-CCcccceec
Q psy7834 58 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLD-EAPYDIIHV 136 (492)
Q Consensus 58 ~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D~i~~ 136 (492)
++||-||-|.|..+..+.+.. +..+++.|||++..++.|++++....-. ...++++.+.+|+.+.... .++||+|+.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~-~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGG-ADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccc-cCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 699999999999999999985 5689999999999999999998664311 1147999999999876542 347999988
Q ss_pred c
Q psy7834 137 G 137 (492)
Q Consensus 137 ~ 137 (492)
.
T Consensus 156 D 156 (282)
T COG0421 156 D 156 (282)
T ss_pred c
Confidence 4
No 470
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.99 E-value=0.0028 Score=60.48 Aligned_cols=80 Identities=24% Similarity=0.245 Sum_probs=50.3
Q ss_pred CCeEEEEcCc-CcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhh-cCCCCccccCceEEEecCCCCCCCCCCcccce
Q psy7834 57 GKKVLDIGSG-NGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVI-SGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 134 (492)
Q Consensus 57 ~~~vLDiG~G-~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i 134 (492)
.++|+=|||| --..++.|++..++...|+++|+++++++.+++... ..++. .+++|+++|+.+.......||+|
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~----~~m~f~~~d~~~~~~dl~~~DvV 196 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLS----KRMSFITADVLDVTYDLKEYDVV 196 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-----SSEEEEES-GGGG-GG----SEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccccc----CCeEEEecchhccccccccCCEE
Confidence 3599999999 567778888776566799999999999999999877 44553 78999999998776556789999
Q ss_pred eccCcc
Q psy7834 135 HVGGSI 140 (492)
Q Consensus 135 ~~~~~~ 140 (492)
+.+.-.
T Consensus 197 ~lAalV 202 (276)
T PF03059_consen 197 FLAALV 202 (276)
T ss_dssp EE-TT-
T ss_pred EEhhhc
Confidence 886443
No 471
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.97 E-value=0.0034 Score=60.50 Aligned_cols=82 Identities=22% Similarity=0.240 Sum_probs=49.9
Q ss_pred CCeEEEEcCcCcHH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcC-CCCccccCceEEEecCC----CCCC-CCCC
Q psy7834 57 GKKVLDIGSGNGYF-TALLAWCVGKTGKVIGIEHIPQLVQRATHNVISG-NPEFVKDGRIKFVLGDG----RKGY-LDEA 129 (492)
Q Consensus 57 ~~~vLDiG~G~G~~-~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~-~~~~~~~~~v~~~~~d~----~~~~-~~~~ 129 (492)
..++||||||.-.. .+.-++..+ -+++|.||++..++.|+++++.+ +++ ++|+++...- .... ...+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~--W~fvaTdID~~sl~~A~~nv~~N~~L~----~~I~l~~~~~~~~i~~~i~~~~e 176 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYG--WSFVATDIDPKSLESARENVERNPNLE----SRIELRKQKNPDNIFDGIIQPNE 176 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-T----TTEEEEE--ST-SSTTTSTT--S
T ss_pred ceEeecCCccHHHHHHHHhhhhcC--CeEEEecCCHHHHHHHHHHHHhccccc----cceEEEEcCCccccchhhhcccc
Confidence 45899999997755 555555554 79999999999999999999999 885 7898886642 2211 2346
Q ss_pred cccceeccCcccccc
Q psy7834 130 PYDIIHVGGSIEDIP 144 (492)
Q Consensus 130 ~~D~i~~~~~~~~l~ 144 (492)
.||..+|+-.+++-.
T Consensus 177 ~~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 177 RFDFTMCNPPFYSSQ 191 (299)
T ss_dssp -EEEEEE-----SS-
T ss_pred eeeEEecCCccccCh
Confidence 799999986665433
No 472
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.97 E-value=0.0036 Score=57.14 Aligned_cols=83 Identities=23% Similarity=0.265 Sum_probs=58.5
Q ss_pred hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCC---CCCCC
Q psy7834 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKG---YLDEA 129 (492)
Q Consensus 53 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~~~ 129 (492)
.+++|.+||-+|..+|..-.-++..+++++.|+|||+|+...+..-..+++. +|+-.+-+|+..- ..--+
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-------~NIiPIl~DAr~P~~Y~~lv~ 142 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-------PNIIPILEDARHPEKYRMLVE 142 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-------TTEEEEES-TTSGGGGTTTS-
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-------CceeeeeccCCChHHhhcccc
Confidence 6678999999999999999999999998899999999996544333333222 6899999998642 12245
Q ss_pred cccceeccCcccc
Q psy7834 130 PYDIIHVGGSIED 142 (492)
Q Consensus 130 ~~D~i~~~~~~~~ 142 (492)
.+|+|++..+.++
T Consensus 143 ~VDvI~~DVaQp~ 155 (229)
T PF01269_consen 143 MVDVIFQDVAQPD 155 (229)
T ss_dssp -EEEEEEE-SSTT
T ss_pred cccEEEecCCChH
Confidence 8899998766543
No 473
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.96 E-value=0.0016 Score=61.80 Aligned_cols=81 Identities=28% Similarity=0.380 Sum_probs=60.2
Q ss_pred CCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCC-CCC-ccc
Q psy7834 55 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL-DEA-PYD 132 (492)
Q Consensus 55 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~-~~D 132 (492)
.+.++||=||-|.|..+..+.+.- +..+|+.||+++..++.|++.+...... ...++++++.+|+..... ..+ +||
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~-~~d~r~~i~~~Dg~~~l~~~~~~~yD 152 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEG-LDDPRVRIIIGDGRKFLKETQEEKYD 152 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTT-GGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred CCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccc-cCCCceEEEEhhhHHHHHhccCCccc
Confidence 467899999999999999998764 4479999999999999999987542210 223689999999876532 234 899
Q ss_pred ceecc
Q psy7834 133 IIHVG 137 (492)
Q Consensus 133 ~i~~~ 137 (492)
+|+..
T Consensus 153 vIi~D 157 (246)
T PF01564_consen 153 VIIVD 157 (246)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99873
No 474
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.93 E-value=0.0049 Score=60.43 Aligned_cols=94 Identities=21% Similarity=0.257 Sum_probs=69.6
Q ss_pred ccCCCCceEEEecc-ccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEcc-CCCCCcCCCC
Q psy7834 208 YLKPGAKVLDIGSG-SGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGD-GREGHAAEGP 285 (492)
Q Consensus 208 ~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~ 285 (492)
.++||++|+=+|+| .|..+..+|+..+ ++|+++|.|++-++.|++--.. .++... ......-.+.
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGAd-----------~~i~~~~~~~~~~~~~~ 229 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGAD-----------HVINSSDSDALEAVKEI 229 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhCCc-----------EEEEcCCchhhHHhHhh
Confidence 37899999999987 4567888888764 6899999999999988865221 333322 1111111234
Q ss_pred ccEEEecCcchhhHHHHHHHhccCCeEEEE
Q psy7834 286 YDVIYVGGAVHHYPFKLMDQLKPGGVMWFT 315 (492)
Q Consensus 286 fD~i~s~~~~~~~~~~~~~~L~pgG~l~~~ 315 (492)
||+|+.... ..-.+...+.|++||++++.
T Consensus 230 ~d~ii~tv~-~~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 230 ADAIIDTVG-PATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred CcEEEECCC-hhhHHHHHHHHhcCCEEEEE
Confidence 999998888 77778999999999999984
No 475
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.89 E-value=0.0019 Score=60.94 Aligned_cols=104 Identities=20% Similarity=0.171 Sum_probs=60.8
Q ss_pred CCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCC-----------CCC------------CC
Q psy7834 211 PGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPN-----------LME------------GG 267 (492)
Q Consensus 211 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~-----------~~~------------~~ 267 (492)
.|.++||||||+-..-..-|... ..+++..|.++.-++..++-++..+.- ..+ -.
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~--f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEW--FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGT--EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHh--hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 46799999999965543333332 236999999998877555443331100 000 01
Q ss_pred cE-EEEEccCCCCCcCC------CCccEEEecCcchhhH----------HHHHHHhccCCeEEEEe
Q psy7834 268 RV-QFVDGDGREGHAAE------GPYDVIYVGGAVHHYP----------FKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 268 ~v-~~~~~d~~~~~~~~------~~fD~i~s~~~~~~~~----------~~~~~~L~pgG~l~~~~ 316 (492)
.| .++..|.....+-. .+||+|++...+.-.. .++.++|||||.|++..
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 13 36778886543221 2499999998775332 37889999999999854
No 476
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.89 E-value=0.003 Score=61.19 Aligned_cols=86 Identities=22% Similarity=0.236 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCC
Q psy7834 42 QQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDG 121 (492)
Q Consensus 42 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 121 (492)
+.+.+++.| .+.++..++|.--|.|..|..+.+..++ ++|+|+|.++++++.|++++.... +++.+++++.
T Consensus 8 ll~Evl~~L--~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~~------~r~~~~~~~F 78 (310)
T PF01795_consen 8 LLKEVLEAL--NPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKFD------DRFIFIHGNF 78 (310)
T ss_dssp THHHHHHHH--T--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCCC------TTEEEEES-G
T ss_pred cHHHHHHhh--CcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhcc------ceEEEEeccH
Confidence 368889999 7888999999999999999999998744 999999999999999999887653 7899999997
Q ss_pred CCCCC------CCCcccceec
Q psy7834 122 RKGYL------DEAPYDIIHV 136 (492)
Q Consensus 122 ~~~~~------~~~~~D~i~~ 136 (492)
.++.. ...++|.|++
T Consensus 79 ~~l~~~l~~~~~~~~~dgiL~ 99 (310)
T PF01795_consen 79 SNLDEYLKELNGINKVDGILF 99 (310)
T ss_dssp GGHHHHHHHTTTTS-EEEEEE
T ss_pred HHHHHHHHHccCCCccCEEEE
Confidence 66531 2245666655
No 477
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.87 E-value=0.0031 Score=53.51 Aligned_cols=79 Identities=22% Similarity=0.327 Sum_probs=53.9
Q ss_pred eEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCc--CCCCccEEEecCcc-----hhh---H-------H
Q psy7834 238 KVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHA--AEGPYDVIYVGGAV-----HHY---P-------F 300 (492)
Q Consensus 238 ~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD~i~s~~~~-----~~~---~-------~ 300 (492)
+|+|+||.+++++.+++++.+.+ ...++++++.+=+.... +.+++|+++.|... +.+ + +
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~----~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG----LEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-----GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcC----CCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence 69999999999999999999864 23479999977544322 22589999988543 111 1 3
Q ss_pred HHHHHhccCCeEEEEeCCCc
Q psy7834 301 KLMDQLKPGGVMWFTIGNAE 320 (492)
Q Consensus 301 ~~~~~L~pgG~l~~~~~~~~ 320 (492)
.+.+.|+|||++.+.+-+..
T Consensus 77 ~al~lL~~gG~i~iv~Y~GH 96 (140)
T PF06962_consen 77 AALELLKPGGIITIVVYPGH 96 (140)
T ss_dssp HHHHHEEEEEEEEEEE--ST
T ss_pred HHHHhhccCCEEEEEEeCCC
Confidence 77899999999999775443
No 478
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.84 E-value=0.0023 Score=57.81 Aligned_cols=74 Identities=14% Similarity=0.149 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCC
Q psy7834 43 QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGR 122 (492)
Q Consensus 43 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 122 (492)
...+++++. ...++..|-|+|||.+.++..+... -+|+..|+-.. +-....+|+.
T Consensus 60 vd~iI~~l~-~~~~~~viaD~GCGdA~la~~~~~~----~~V~SfDLva~--------------------n~~Vtacdia 114 (219)
T PF05148_consen 60 VDVIIEWLK-KRPKSLVIADFGCGDAKLAKAVPNK----HKVHSFDLVAP--------------------NPRVTACDIA 114 (219)
T ss_dssp HHHHHHHHC-TS-TTS-EEEES-TT-HHHHH--S-------EEEEESS-S--------------------STTEEES-TT
T ss_pred HHHHHHHHH-hcCCCEEEEECCCchHHHHHhcccC----ceEEEeeccCC--------------------CCCEEEecCc
Confidence 457788884 2334579999999999998665432 47999998431 2246779999
Q ss_pred CCCCCCCcccceeccCccc
Q psy7834 123 KGYLDEAPYDIIHVGGSIE 141 (492)
Q Consensus 123 ~~~~~~~~~D~i~~~~~~~ 141 (492)
.+|++++++|++|+..++-
T Consensus 115 ~vPL~~~svDv~VfcLSLM 133 (219)
T PF05148_consen 115 NVPLEDESVDVAVFCLSLM 133 (219)
T ss_dssp S-S--TT-EEEEEEES---
T ss_pred cCcCCCCceeEEEEEhhhh
Confidence 9999999999999987763
No 479
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.83 E-value=0.0035 Score=59.66 Aligned_cols=89 Identities=20% Similarity=0.172 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecC
Q psy7834 41 FQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGD 120 (492)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 120 (492)
.+...+++.| .++++...+|.--|-|..+..+.++.++.++++|+|-++.+++.|++++..++ +++++++++
T Consensus 10 VLl~E~i~~L--~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~------~r~~~v~~~ 81 (314)
T COG0275 10 VLLNEVVELL--APKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD------GRVTLVHGN 81 (314)
T ss_pred hHHHHHHHhc--ccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC------CcEEEEeCc
Confidence 3467888888 88899999999999999999999998777899999999999999999987765 689999998
Q ss_pred CCCCCC-----CCCcccceecc
Q psy7834 121 GRKGYL-----DEAPYDIIHVG 137 (492)
Q Consensus 121 ~~~~~~-----~~~~~D~i~~~ 137 (492)
..++.. ...++|-|+..
T Consensus 82 F~~l~~~l~~~~i~~vDGiL~D 103 (314)
T COG0275 82 FANLAEALKELGIGKVDGILLD 103 (314)
T ss_pred HHHHHHHHHhcCCCceeEEEEe
Confidence 665432 23466777654
No 480
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.82 E-value=0.0074 Score=56.21 Aligned_cols=112 Identities=15% Similarity=0.069 Sum_probs=73.9
Q ss_pred HHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCC
Q psy7834 199 AQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGRE 278 (492)
Q Consensus 199 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 278 (492)
+.+.+.+...+++..+|+|||||.--++....... ++..++|+|++..+++..++-+...+ .+.++...|...
T Consensus 93 d~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~------~~~~~~v~Dl~~ 165 (251)
T PF07091_consen 93 DEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLG------VPHDARVRDLLS 165 (251)
T ss_dssp HHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-------CEEEEEE-TTT
T ss_pred HHHHHHHHhcCCCCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhC------CCcceeEeeeec
Confidence 44555555556678899999999999988766543 66799999999999999998887753 467888888765
Q ss_pred CCcCCCCccEEEecCcchhhHH----HHHHHhcc--CCeEEEEeCC
Q psy7834 279 GHAAEGPYDVIYVGGAVHHYPF----KLMDQLKP--GGVMWFTIGN 318 (492)
Q Consensus 279 ~~~~~~~fD~i~s~~~~~~~~~----~~~~~L~p--gG~l~~~~~~ 318 (492)
. .+..+.|+.+.-=.++-+.. ...++|.. .=.++++++.
T Consensus 166 ~-~~~~~~DlaLllK~lp~le~q~~g~g~~ll~~~~~~~~vVSfPt 210 (251)
T PF07091_consen 166 D-PPKEPADLALLLKTLPCLERQRRGAGLELLDALRSPHVVVSFPT 210 (251)
T ss_dssp S-HTTSEESEEEEET-HHHHHHHSTTHHHHHHHHSCESEEEEEEES
T ss_pred c-CCCCCcchhhHHHHHHHHHHHhcchHHHHHHHhCCCeEEEeccc
Confidence 3 34567999987776666554 33444432 2346666654
No 481
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.81 E-value=0.0046 Score=58.83 Aligned_cols=92 Identities=21% Similarity=0.318 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEc
Q psy7834 195 PKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDG 274 (492)
Q Consensus 195 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~ 274 (492)
|-+...+++.|. +.++...+|.--|.|..+..+...+++.++++|+|.++.+++.|++++... .+++.++++
T Consensus 9 pVLl~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~------~~r~~~v~~ 80 (314)
T COG0275 9 PVLLNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF------DGRVTLVHG 80 (314)
T ss_pred chHHHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc------CCcEEEEeC
Confidence 345667778776 678899999999999999999999977889999999999999999998764 368999998
Q ss_pred cCCCCCc-----CCCCccEEEecCc
Q psy7834 275 DGREGHA-----AEGPYDVIYVGGA 294 (492)
Q Consensus 275 d~~~~~~-----~~~~fD~i~s~~~ 294 (492)
++.+... ..+++|-|+....
T Consensus 81 ~F~~l~~~l~~~~i~~vDGiL~DLG 105 (314)
T COG0275 81 NFANLAEALKELGIGKVDGILLDLG 105 (314)
T ss_pred cHHHHHHHHHhcCCCceeEEEEecc
Confidence 8654321 1346777775543
No 482
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.77 E-value=0.0045 Score=56.89 Aligned_cols=97 Identities=24% Similarity=0.191 Sum_probs=68.0
Q ss_pred CCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEE-EccCCCCCcC--CCCc
Q psy7834 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFV-DGDGREGHAA--EGPY 286 (492)
Q Consensus 210 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~-~~d~~~~~~~--~~~f 286 (492)
.+|..+||+|+-||.+|..+.++. ..+|+|+|..-..+..-- +. .+++... ..|++..... .+..
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~kL---R~-------d~rV~~~E~tN~r~l~~~~~~~~~ 145 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWKL---RN-------DPRVIVLERTNVRYLTPEDFTEKP 145 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHhH---hc-------CCcEEEEecCChhhCCHHHcccCC
Confidence 468999999999999999999985 348999999876654422 11 2344443 3444433221 2468
Q ss_pred cEEEecCcch---hhHHHHHHHhccCCeEEEEeCC
Q psy7834 287 DVIYVGGAVH---HYPFKLMDQLKPGGVMWFTIGN 318 (492)
Q Consensus 287 D~i~s~~~~~---~~~~~~~~~L~pgG~l~~~~~~ 318 (492)
|++++..++- .+...+...|+|+|.++.-+-|
T Consensus 146 d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~LvKP 180 (245)
T COG1189 146 DLIVIDVSFISLKLILPALLLLLKDGGDLVLLVKP 180 (245)
T ss_pred CeEEEEeehhhHHHHHHHHHHhcCCCceEEEEecc
Confidence 8998776654 3445888999999999886654
No 483
>KOG2352|consensus
Probab=96.72 E-value=0.0086 Score=60.69 Aligned_cols=101 Identities=20% Similarity=0.277 Sum_probs=77.7
Q ss_pred HhccCCCC-ceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCcCCC
Q psy7834 206 KDYLKPGA-KVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEG 284 (492)
Q Consensus 206 ~~~~~~~~-~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 284 (492)
...+.+-. ++|-+|||.-.++..+-+-+.. .|+.+|+|+..++....+-.. ..+...+...|.....++++
T Consensus 42 ~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~~~------~~~~~~~~~~d~~~l~fedE 113 (482)
T KOG2352|consen 42 MKYLSPSDFKILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRNAK------ERPEMQMVEMDMDQLVFEDE 113 (482)
T ss_pred HHhhchhhceeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhcccc------CCcceEEEEecchhccCCCc
Confidence 33456666 9999999999999888776544 699999999999887665422 23457899999988888999
Q ss_pred CccEEEecCcchhh-------------H---HHHHHHhccCCeEEE
Q psy7834 285 PYDVIYVGGAVHHY-------------P---FKLMDQLKPGGVMWF 314 (492)
Q Consensus 285 ~fD~i~s~~~~~~~-------------~---~~~~~~L~pgG~l~~ 314 (492)
+||+|+--..++++ . +++.++|+|||+.+.
T Consensus 114 SFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 114 SFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred ceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 99999866554322 1 378899999999654
No 484
>KOG3115|consensus
Probab=96.70 E-value=0.0061 Score=54.33 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=68.6
Q ss_pred CCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCC--CCCCcEEEEEccCCCCC---cCCCCc
Q psy7834 212 GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNL--MEGGRVQFVDGDGREGH---AAEGPY 286 (492)
Q Consensus 212 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~--~~~~~v~~~~~d~~~~~---~~~~~f 286 (492)
.-.+.|||||-|.+...|+..+ |..-++|++|--..-+..+++++...... ....|+..+..+..... +..+.-
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred cceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 3579999999999999999997 88889999999888888888876643221 11356666666543211 122222
Q ss_pred cEEEecCcch--------------hhHHHHHHHhccCCeEEEEe
Q psy7834 287 DVIYVGGAVH--------------HYPFKLMDQLKPGGVMWFTI 316 (492)
Q Consensus 287 D~i~s~~~~~--------------~~~~~~~~~L~pgG~l~~~~ 316 (492)
+-.+....-. ++..+..=+|++||.++...
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 2222222111 23346677899999998754
No 485
>PRK00536 speE spermidine synthase; Provisional
Probab=96.70 E-value=0.0067 Score=57.67 Aligned_cols=93 Identities=13% Similarity=-0.015 Sum_probs=66.0
Q ss_pred hhHHHHHHHHHHH-hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEe
Q psy7834 40 KFQQAMVLDDLSE-ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVL 118 (492)
Q Consensus 40 ~~~~~~~~~~l~~-~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~ 118 (492)
+++...++.+..- .-...++||=+|.|-|..+..+.+.- .+|+-|||++++++.+++++....- -+..++++++.
T Consensus 55 EfiYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh~---~~v~mVeID~~Vv~~~k~~lP~~~~-~~~DpRv~l~~ 130 (262)
T PRK00536 55 LHIESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYD---THVDFVQADEKILDSFISFFPHFHE-VKNNKNFTHAK 130 (262)
T ss_pred hhhHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCcC---CeeEEEECCHHHHHHHHHHCHHHHH-hhcCCCEEEee
Confidence 4456666655421 22456899999999999999999983 5999999999999999997654221 13457888875
Q ss_pred cCCCCCCCCCCcccceeccCc
Q psy7834 119 GDGRKGYLDEAPYDIIHVGGS 139 (492)
Q Consensus 119 ~d~~~~~~~~~~~D~i~~~~~ 139 (492)
. ..+ ...++||+|+....
T Consensus 131 ~-~~~--~~~~~fDVIIvDs~ 148 (262)
T PRK00536 131 Q-LLD--LDIKKYDLIICLQE 148 (262)
T ss_pred h-hhh--ccCCcCCEEEEcCC
Confidence 2 111 12368999998754
No 486
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.67 E-value=0.0026 Score=61.61 Aligned_cols=92 Identities=20% Similarity=0.320 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEc
Q psy7834 195 PKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDG 274 (492)
Q Consensus 195 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~ 274 (492)
|-+...+++.|. ..++..++|.--|.|..+..+.+..+ .++|+|+|.++++++.|++++... ..++.++++
T Consensus 6 PVll~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~-~~~li~~DrD~~a~~~a~~~l~~~------~~r~~~~~~ 76 (310)
T PF01795_consen 6 PVLLKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLP-NGRLIGIDRDPEALERAKERLKKF------DDRFIFIHG 76 (310)
T ss_dssp -TTHHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-T-T-EEEEEES-HHHHHHHHCCTCCC------CTTEEEEES
T ss_pred cccHHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCC-CCeEEEecCCHHHHHHHHHHHhhc------cceEEEEec
Confidence 445677888886 67888999999999999999999884 499999999999999999887642 368999999
Q ss_pred cCCCCC-----c-CCCCccEEEecCcc
Q psy7834 275 DGREGH-----A-AEGPYDVIYVGGAV 295 (492)
Q Consensus 275 d~~~~~-----~-~~~~fD~i~s~~~~ 295 (492)
++.+.. . ...++|.|+....+
T Consensus 77 ~F~~l~~~l~~~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 77 NFSNLDEYLKELNGINKVDGILFDLGV 103 (310)
T ss_dssp -GGGHHHHHHHTTTTS-EEEEEEE-S-
T ss_pred cHHHHHHHHHHccCCCccCEEEEcccc
Confidence 876432 1 22468888766543
No 487
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.63 E-value=0.0022 Score=58.19 Aligned_cols=82 Identities=17% Similarity=0.200 Sum_probs=58.5
Q ss_pred CceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCCCCCc---CCCCccEE
Q psy7834 213 AKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHA---AEGPYDVI 289 (492)
Q Consensus 213 ~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~i 289 (492)
-++|||||=+......-.. --.|+.||+.+. .-.+.+.|+.+.+. +.++||+|
T Consensus 53 lrlLEVGals~~N~~s~~~----~fdvt~IDLns~--------------------~~~I~qqDFm~rplp~~~~e~FdvI 108 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSG----WFDVTRIDLNSQ--------------------HPGILQQDFMERPLPKNESEKFDVI 108 (219)
T ss_pred ceEEeecccCCCCcccccC----ceeeEEeecCCC--------------------CCCceeeccccCCCCCCcccceeEE
Confidence 5999999886655443322 224999998652 12456667765443 35789999
Q ss_pred EecCcchhhHH---------HHHHHhccCCe-----EEEEeCC
Q psy7834 290 YVGGAVHHYPF---------KLMDQLKPGGV-----MWFTIGN 318 (492)
Q Consensus 290 ~s~~~~~~~~~---------~~~~~L~pgG~-----l~~~~~~ 318 (492)
.++.++..+|+ .+.+.|+|+|. |++..|.
T Consensus 109 s~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 109 SLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL 151 (219)
T ss_pred EEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence 99999988884 67899999999 8876553
No 488
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.61 E-value=0.012 Score=59.06 Aligned_cols=81 Identities=21% Similarity=0.240 Sum_probs=68.1
Q ss_pred hcCCCCeEEEEcCcCcHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCCC---CC
Q psy7834 53 ELTEGKKVLDIGSGNGYFTALLAWCVGK-TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYL---DE 128 (492)
Q Consensus 53 ~~~~~~~vLDiG~G~G~~~~~la~~~~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~ 128 (492)
++++|.+|||+.++.|.=|..||..... ...|+++|+++.-++..++++++.|+ .++..++.|....+. ..
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~-----~nv~~~~~d~~~~~~~~~~~ 227 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV-----RNVIVVNKDARRLAELLPGG 227 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC-----CceEEEeccccccccccccc
Confidence 7889999999999999999999998732 24569999999999999999999998 678999999876542 22
Q ss_pred CcccceeccC
Q psy7834 129 APYDIIHVGG 138 (492)
Q Consensus 129 ~~~D~i~~~~ 138 (492)
.+||.|+...
T Consensus 228 ~~fD~iLlDa 237 (355)
T COG0144 228 EKFDRILLDA 237 (355)
T ss_pred CcCcEEEECC
Confidence 3599998853
No 489
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.60 E-value=0.0011 Score=59.88 Aligned_cols=68 Identities=24% Similarity=0.388 Sum_probs=46.4
Q ss_pred CCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCC--------CC
Q psy7834 56 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY--------LD 127 (492)
Q Consensus 56 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--------~~ 127 (492)
.+.+|||+||++|.++..+.+..++.++|+|+|+.+.. .+ .++.++++|..+.. +.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~-----------~~-----~~~~~i~~d~~~~~~~~~i~~~~~ 86 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD-----------PL-----QNVSFIQGDITNPENIKDIRKLLP 86 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG-----------S------TTEEBTTGGGEEEEHSHHGGGSHG
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc-----------cc-----cceeeeecccchhhHHHhhhhhcc
Confidence 34899999999999999999987556899999998770 01 34566666653311 11
Q ss_pred --CCcccceeccCc
Q psy7834 128 --EAPYDIIHVGGS 139 (492)
Q Consensus 128 --~~~~D~i~~~~~ 139 (492)
..++|+|++..+
T Consensus 87 ~~~~~~dlv~~D~~ 100 (181)
T PF01728_consen 87 ESGEKFDLVLSDMA 100 (181)
T ss_dssp TTTCSESEEEE---
T ss_pred ccccCcceeccccc
Confidence 257999988553
No 490
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.49 E-value=0.0091 Score=54.10 Aligned_cols=71 Identities=25% Similarity=0.431 Sum_probs=54.6
Q ss_pred hcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCC-------
Q psy7834 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY------- 125 (492)
Q Consensus 53 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~------- 125 (492)
-++++++|+|+|+-.|.-+..+++.+++.++|+|+|+.+-- + .++|.++++|+.+-.
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------------~----~~~V~~iq~d~~~~~~~~~l~~ 105 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------------P----IPGVIFLQGDITDEDTLEKLLE 105 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------------c----CCCceEEeeeccCccHHHHHHH
Confidence 45778999999999999999999999877889999996522 1 156999999987643
Q ss_pred -CCCCcccceeccCc
Q psy7834 126 -LDEAPYDIIHVGGS 139 (492)
Q Consensus 126 -~~~~~~D~i~~~~~ 139 (492)
+...++|+|++..+
T Consensus 106 ~l~~~~~DvV~sD~a 120 (205)
T COG0293 106 ALGGAPVDVVLSDMA 120 (205)
T ss_pred HcCCCCcceEEecCC
Confidence 23344688776433
No 491
>PRK11524 putative methyltransferase; Provisional
Probab=96.45 E-value=0.0082 Score=58.32 Aligned_cols=62 Identities=19% Similarity=0.072 Sum_probs=51.2
Q ss_pred cchhhhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhc
Q psy7834 36 TKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS 103 (492)
Q Consensus 36 ~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~ 103 (492)
.++...+.++++... ..+|+.|||-.||+|..+.+..+.. -+.+|+|++++.++.|++++..
T Consensus 191 t~kP~~L~erlI~~~---S~~GD~VLDPF~GSGTT~~AA~~lg---R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 191 TQKPEALLKRIILAS---SNPGDIVLDPFAGSFTTGAVAKASG---RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred ccChHHHHHHHHHHh---CCCCCEEEECCCCCcHHHHHHHHcC---CCEEEEeCCHHHHHHHHHHHHh
Confidence 345566667777665 4689999999999999988877764 7999999999999999999743
No 492
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.26 E-value=0.041 Score=55.20 Aligned_cols=98 Identities=21% Similarity=0.333 Sum_probs=67.3
Q ss_pred cCCCCceEEEeccc-cHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEc-cCC-C--CCcCC
Q psy7834 209 LKPGAKVLDIGSGS-GYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDG-DGR-E--GHAAE 283 (492)
Q Consensus 209 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~-d~~-~--~~~~~ 283 (492)
..++.+|+=+|||+ |.++..+++..+ ..+|+.+|.+++-++.|++.... ..+..... +.. . .....
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g~--------~~~~~~~~~~~~~~~~~~t~g 236 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGGA--------DVVVNPSEDDAGAEILELTGG 236 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCCC--------eEeecCccccHHHHHHHHhCC
Confidence 34455999999998 888888888874 57899999999999999885422 11111111 100 0 01112
Q ss_pred CCccEEEecCcchhhHHHHHHHhccCCeEEEE
Q psy7834 284 GPYDVIYVGGAVHHYPFKLMDQLKPGGVMWFT 315 (492)
Q Consensus 284 ~~fD~i~s~~~~~~~~~~~~~~L~pgG~l~~~ 315 (492)
..+|+++=........+.+.+.++|||++++.
T Consensus 237 ~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 237 RGADVVIEAVGSPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence 36999996555555557899999999999884
No 493
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.22 E-value=0.04 Score=57.72 Aligned_cols=124 Identities=19% Similarity=0.242 Sum_probs=84.6
Q ss_pred CCcccChHHHHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCC---CCeEEEEeCCHHHHHHHHHHHHhhCCCCCC
Q psy7834 189 GSVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGP---TGKVYAVEHIEDLVAQANKSMHTYYPNLME 265 (492)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~---~~~v~giD~s~~~l~~a~~~~~~~~~~~~~ 265 (492)
|...++..+...+.+.+. +.+..+|+|-.||+|.+....++.++. ...++|.|+++.....|+.|+--.+.+
T Consensus 166 GEfyTP~~v~~liv~~l~--~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~--- 240 (489)
T COG0286 166 GEFYTPREVSELIVELLD--PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE--- 240 (489)
T ss_pred CccCChHHHHHHHHHHcC--CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC---
Confidence 444455566666666665 357779999999999988877776633 256999999999999999998765421
Q ss_pred CCcEEEEEccCCCCCc-----CCCCccEEEecCcch---hh-----------------H-----------HHHHHHhccC
Q psy7834 266 GGRVQFVDGDGREGHA-----AEGPYDVIYVGGAVH---HY-----------------P-----------FKLMDQLKPG 309 (492)
Q Consensus 266 ~~~v~~~~~d~~~~~~-----~~~~fD~i~s~~~~~---~~-----------------~-----------~~~~~~L~pg 309 (492)
.++....+|....+. ..+.||.|+++..+. |. + ..+...|+||
T Consensus 241 -~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~ 319 (489)
T COG0286 241 -GDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPG 319 (489)
T ss_pred -ccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCC
Confidence 134556666443332 236799999885431 00 0 1567889999
Q ss_pred CeEEEEeCC
Q psy7834 310 GVMWFTIGN 318 (492)
Q Consensus 310 G~l~~~~~~ 318 (492)
|+..+.++.
T Consensus 320 g~aaivl~~ 328 (489)
T COG0286 320 GRAAIVLPD 328 (489)
T ss_pred ceEEEEecC
Confidence 987776544
No 494
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.18 E-value=0.014 Score=54.42 Aligned_cols=56 Identities=20% Similarity=0.084 Sum_probs=42.4
Q ss_pred hhhhHHHHHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy7834 38 FSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATH 99 (492)
Q Consensus 38 ~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~ 99 (492)
....+.++++.+. ..+|+.|||-.||+|..+.+..+.. .+.+|+|++++.++.|++
T Consensus 176 kP~~l~~~lI~~~---t~~gdiVlDpF~GSGTT~~aa~~l~---R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 176 KPVELIERLIKAS---TNPGDIVLDPFAGSGTTAVAAEELG---RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-HHHHHHHHHHH---S-TT-EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHHHH
T ss_pred CCHHHHHHHHHhh---hccceeeehhhhccChHHHHHHHcC---CeEEEEeCCHHHHHHhcC
Confidence 4455566666665 5689999999999999998888774 799999999999999874
No 495
>KOG0024|consensus
Probab=96.16 E-value=0.034 Score=53.52 Aligned_cols=98 Identities=20% Similarity=0.269 Sum_probs=71.0
Q ss_pred ccCCCCceEEEeccc-cHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccC-----CC---
Q psy7834 208 YLKPGAKVLDIGSGS-GYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDG-----RE--- 278 (492)
Q Consensus 208 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~-----~~--- 278 (492)
.++.|.+||=+|+|+ |..+...|+..+ ..+|+.+|+++..++.|++ +.. ..+....... .+
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~-~Ga--------~~~~~~~~~~~~~~~~~~v~ 235 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK-FGA--------TVTDPSSHKSSPQELAELVE 235 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH-hCC--------eEEeeccccccHHHHHHHHH
Confidence 378899999999997 888888888874 5789999999999999998 432 1122221111 00
Q ss_pred CCcCCCCccEEEecCcchhhHHHHHHHhccCCeEEEE
Q psy7834 279 GHAAEGPYDVIYVGGAVHHYPFKLMDQLKPGGVMWFT 315 (492)
Q Consensus 279 ~~~~~~~fD~i~s~~~~~~~~~~~~~~L~pgG~l~~~ 315 (492)
....+..||+.|....++-..+.....+|+||++++.
T Consensus 236 ~~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlv 272 (354)
T KOG0024|consen 236 KALGKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVLV 272 (354)
T ss_pred hhccccCCCeEEEccCchHHHHHHHHHhccCCEEEEe
Confidence 0112345999998887777777788899999996664
No 496
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.15 E-value=0.13 Score=47.68 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=62.4
Q ss_pred HHHHHHHHHhccCCCCceEEEeccccHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhCCCCCCCCcEEEEEccCC
Q psy7834 198 HAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGR 277 (492)
Q Consensus 198 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 277 (492)
..+++-+....--.|++||=+|=. -..++++|. .+...+|+.+|+++.+++.-++.+++.+ . +++.++.|++
T Consensus 31 ~~Ra~~~~~~gdL~gk~il~lGDD-DLtSlA~al-~~~~~~I~VvDiDeRll~fI~~~a~~~g-----l-~i~~~~~DlR 102 (243)
T PF01861_consen 31 LRRAALMAERGDLEGKRILFLGDD-DLTSLALAL-TGLPKRITVVDIDERLLDFINRVAEEEG-----L-PIEAVHYDLR 102 (243)
T ss_dssp HHHHHHHHHTT-STT-EEEEES-T-T-HHHHHHH-HT--SEEEEE-S-HHHHHHHHHHHHHHT--------EEEE---TT
T ss_pred HHHHHHHHhcCcccCCEEEEEcCC-cHHHHHHHh-hCCCCeEEEEEcCHHHHHHHHHHHHHcC-----C-ceEEEEeccc
Confidence 334333333222358899998833 233444443 3456799999999999999998888864 2 4999999998
Q ss_pred CCCcC--CCCccEEEecCcc-----hhhHHHHHHHhccCC-eEEEEeCCC
Q psy7834 278 EGHAA--EGPYDVIYVGGAV-----HHYPFKLMDQLKPGG-VMWFTIGNA 319 (492)
Q Consensus 278 ~~~~~--~~~fD~i~s~~~~-----~~~~~~~~~~L~pgG-~l~~~~~~~ 319 (492)
...++ .++||+++.+... .-+..+..+.||.-| ..++.....
T Consensus 103 ~~LP~~~~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~ 152 (243)
T PF01861_consen 103 DPLPEELRGKFDVFFTDPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHK 152 (243)
T ss_dssp S---TTTSS-BSEEEE---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TT
T ss_pred ccCCHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecC
Confidence 76544 4899999998643 223346677887544 777766544
No 497
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.12 E-value=0.025 Score=52.58 Aligned_cols=90 Identities=23% Similarity=0.332 Sum_probs=51.8
Q ss_pred HHHHHHHhcCCCC--eEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHH---HHHHHhhhcCCCCc--cccCceEEEe
Q psy7834 46 VLDDLSEELTEGK--KVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLV---QRATHNVISGNPEF--VKDGRIKFVL 118 (492)
Q Consensus 46 ~~~~l~~~~~~~~--~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~---~~a~~~~~~~~~~~--~~~~~v~~~~ 118 (492)
+++.+ .++++. +|||.-+|-|.-+..+|.. | ++|+++|-|+-+. +.+-++..... +. -...++++++
T Consensus 65 l~kA~--Glk~~~~~~VLDaTaGLG~Da~vlA~~-G--~~V~~lErspvia~Ll~dGL~r~~~~~-~~~~~~~~ri~l~~ 138 (234)
T PF04445_consen 65 LAKAV--GLKPGMRPSVLDATAGLGRDAFVLASL-G--CKVTGLERSPVIAALLKDGLKRAQQDP-ELLAEAMRRIQLIH 138 (234)
T ss_dssp HHHHT--T-BTTB---EEETT-TTSHHHHHHHHH-T----EEEEE--HHHHHHHHHHHHHHHHST-TTHHHHHHHEEEEE
T ss_pred HHHHh--CCCCCCCCEEEECCCcchHHHHHHHcc-C--CeEEEEECCHHHHHHHHHHHHHHHhCc-HhHHHHHhCCEEEc
Confidence 44444 566664 8999999999999999986 4 7999999998754 33333332211 10 0114899999
Q ss_pred cCCCCCC-CCCCcccceeccCccc
Q psy7834 119 GDGRKGY-LDEAPYDIIHVGGSIE 141 (492)
Q Consensus 119 ~d~~~~~-~~~~~~D~i~~~~~~~ 141 (492)
+|..++. .++++||+|++.-.++
T Consensus 139 ~d~~~~L~~~~~s~DVVY~DPMFp 162 (234)
T PF04445_consen 139 GDALEYLRQPDNSFDVVYFDPMFP 162 (234)
T ss_dssp S-CCCHCCCHSS--SEEEE--S--
T ss_pred CCHHHHHhhcCCCCCEEEECCCCC
Confidence 9987753 3578999999954443
No 498
>KOG1501|consensus
Probab=96.08 E-value=0.011 Score=58.49 Aligned_cols=62 Identities=19% Similarity=0.234 Sum_probs=53.1
Q ss_pred CeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCC
Q psy7834 58 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY 125 (492)
Q Consensus 58 ~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 125 (492)
..|||+|+|||.++...++..+ -+|+++|.=..|++.|++...++|.. ++|+.+.--..++.
T Consensus 68 v~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~arkI~~kng~S----dkI~vInkrStev~ 129 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARKIMHKNGMS----DKINVINKRSTEVK 129 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHHHHhcCCCc----cceeeeccccceee
Confidence 4699999999999999999864 47999999999999999999999885 78888876655543
No 499
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.07 E-value=0.035 Score=51.18 Aligned_cols=83 Identities=24% Similarity=0.225 Sum_probs=55.5
Q ss_pred HHHHHHHHhcCCCCeEEEEcCcCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhhhcCCCCccccCce-EEEecCCCC
Q psy7834 45 MVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRI-KFVLGDGRK 123 (492)
Q Consensus 45 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v-~~~~~d~~~ 123 (492)
.+++.+. -..++++|||+|+.||.||..+.+... .+|+|+|...+.+..--++ + +++ .+..-|+..
T Consensus 69 ~ale~F~-l~~k~kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~kLR~----d------~rV~~~E~tN~r~ 135 (245)
T COG1189 69 KALEEFE-LDVKGKVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWKLRN----D------PRVIVLERTNVRY 135 (245)
T ss_pred HHHHhcC-cCCCCCEEEEecCCCccHHHHHHHcCC--cEEEEEEccCCccCHhHhc----C------CcEEEEecCChhh
Confidence 4444442 224678999999999999999999853 7999999988776543221 1 344 444555554
Q ss_pred CCCC--CCcccceeccCcc
Q psy7834 124 GYLD--EAPYDIIHVGGSI 140 (492)
Q Consensus 124 ~~~~--~~~~D~i~~~~~~ 140 (492)
+..+ .+..|++++..++
T Consensus 136 l~~~~~~~~~d~~v~DvSF 154 (245)
T COG1189 136 LTPEDFTEKPDLIVIDVSF 154 (245)
T ss_pred CCHHHcccCCCeEEEEeeh
Confidence 4321 2367888887655
No 500
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.05 E-value=0.0013 Score=53.65 Aligned_cols=75 Identities=28% Similarity=0.506 Sum_probs=25.2
Q ss_pred EEEcCcCcHHHHHHHHHhCCCc--EEEEEeCCHHHHHHHHHhhhcCCCCccccCceEEEecCCCCCC--CCCCcccceec
Q psy7834 61 LDIGSGNGYFTALLAWCVGKTG--KVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGY--LDEAPYDIIHV 136 (492)
Q Consensus 61 LDiG~G~G~~~~~la~~~~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~i~~ 136 (492)
||+||..|..+..+++...+.+ +++++|..+. .+.+++..++.++. .++++++++..+.. +...++|+|+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~----~~~~~~~g~s~~~l~~~~~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLS----DRVEFIQGDSPDFLPSLPDGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS-------------GGG-----BTEEEEES-THHHHHHHHH--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCC----CeEEEEEcCcHHHHHHcCCCCEEEEEE
Confidence 6899999999999998774444 7999999985 33334444433432 67999999986542 22468999999
Q ss_pred cCcc
Q psy7834 137 GGSI 140 (492)
Q Consensus 137 ~~~~ 140 (492)
...+
T Consensus 76 Dg~H 79 (106)
T PF13578_consen 76 DGDH 79 (106)
T ss_dssp ES--
T ss_pred CCCC
Confidence 7654
Done!