RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7834
(492 letters)
>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate)
O-methyltransferase (PCMT).
Length = 210
Score = 178 bits (453), Expect = 2e-53
Identities = 80/191 (41%), Positives = 110/191 (57%), Gaps = 8/191 (4%)
Query: 148 RFGHIASPKVESVMRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKD 207
+G IAS KV M ++DR F+ + Y DIP S+G+G +S+P +HA LE+L+
Sbjct: 12 NYGVIASDKVAEAMLAVDREEFVPESFKSYAYEDIPLSIGYGQTISAPHMHAMMLELLE- 70
Query: 208 YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGG 267
LKPG +VL+IGSGSGYLTAC A MVG G V ++EHI +LV A +++
Sbjct: 71 -LKPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPELVEIARRNLEKLGLE----- 124
Query: 268 RVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQLKPGGVMWFTIG-NAEEMLKNN 326
V V GDGR+G PYD I+VG A P L+DQLK GG + +G N ++L+
Sbjct: 125 NVIVVVGDGRQGWPEFAPYDAIHVGAAAPEIPEALIDQLKEGGRLVIPVGPNGNQVLQQF 184
Query: 327 RRTESNLAVVK 337
+ V+K
Sbjct: 185 DKRNDGSVVIK 195
Score = 117 bits (294), Expect = 2e-30
Identities = 62/149 (41%), Positives = 83/149 (55%), Gaps = 20/149 (13%)
Query: 1 MLAVDRGHYTTWR----PYANCITNIGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTE 56
MLAVDR + Y + +IGYG + AP AM+L+ L EL
Sbjct: 25 MLAVDREEFVPESFKSYAYEDIPLSIGYGQTISAPHM---------HAMMLELL--ELKP 73
Query: 57 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKF 116
G +VL+IGSG+GY TA A VG+ G V+ IEHIP+LV+ A N+ E +
Sbjct: 74 GMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPELVEIARRNLEKLGLE-----NVIV 128
Query: 117 VLGDGRKGYLDEAPYDIIHVGGSIEDIPE 145
V+GDGR+G+ + APYD IHVG + +IPE
Sbjct: 129 VVGDGRQGWPEFAPYDAIHVGAAAPEIPE 157
Score = 84.0 bits (208), Expect = 1e-18
Identities = 34/61 (55%), Positives = 44/61 (72%), Gaps = 2/61 (3%)
Query: 382 HAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMH 441
HA LE+L+ LKPG +VL+IGSGSGYLTAC A MVG G V ++EHI +LV A +++
Sbjct: 62 HAMMLELLE--LKPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPELVEIARRNLE 119
Query: 442 T 442
Sbjct: 120 K 120
>gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate)
O-methyltransferase. This is an all-kingdom (but not
all species) full-length ortholog enzyme for repairing
aging proteins. Among the prokaryotes, the gene name is
pcm. Among eukaryotes, pimt [Protein fate, Protein
modification and repair].
Length = 215
Score = 156 bits (395), Expect = 9e-45
Identities = 64/186 (34%), Positives = 98/186 (52%), Gaps = 7/186 (3%)
Query: 143 IPEGVRFGHIASPKVESVMRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQAL 202
I + + G+I S +V + S+ R F+ Y D P +G+G +S+P + A
Sbjct: 11 IDKLINEGYIKSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMT 70
Query: 203 EILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPN 262
E+L+ LKPG KVL+IG+GSGY A +A +VG G V ++E I +L +A + +
Sbjct: 71 ELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK---- 124
Query: 263 LMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQLKPGGVMWFTIGNAEEM 322
+ V + GDG +G PYD IYV A P L+DQLK GG++ +G ++
Sbjct: 125 -LGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAGPKIPEALIDQLKEGGILVMPVGEYLQV 183
Query: 323 LKNNRR 328
LK +
Sbjct: 184 LKRAEK 189
Score = 93.0 bits (231), Expect = 1e-21
Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 36/157 (22%)
Query: 1 MLAVDRGHYT----TWRPYANCITNIGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTE 56
+L+V R + Y + IGYG + AP AM+ + L EL
Sbjct: 29 LLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHM---------VAMMTELL--ELKP 77
Query: 57 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRAT--------HNVISGNPEF 108
G KVL+IG+G+GY A+LA VG+ G V+ IE IP+L ++A NVI
Sbjct: 78 GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVI------ 131
Query: 109 VKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 145
+ GDG +G+ APYD I+V + IPE
Sbjct: 132 -----VIV--GDGTQGWEPLAPYDRIYVTAAGPKIPE 161
Score = 72.9 bits (179), Expect = 8e-15
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 382 HAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMH 441
A E+L+ LKPG KVL+IG+GSGY A +A +VG G V ++E I +L +A + +
Sbjct: 66 VAMMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLR 123
Query: 442 T 442
Sbjct: 124 K 124
>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 209
Score = 154 bits (392), Expect = 2e-44
Identities = 61/172 (35%), Positives = 91/172 (52%), Gaps = 12/172 (6%)
Query: 152 IASPKVESVMRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKDYLKP 211
I +V ++ R F+ + Y D +G G +S+P + A+ L++L+ LKP
Sbjct: 15 ITDERVLKAFLAVPRELFVPAAYKHLAYEDRALPIGCGQTISAPHMVARMLQLLE--LKP 72
Query: 212 GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTY-YPNLMEGGRVQ 270
G +VL+IG+GSGY A +A +VG +V ++E IE+L QA +++ T Y N V
Sbjct: 73 GDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYEN------VT 123
Query: 271 FVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQLKPGGVMWFTIGNAEEM 322
GDG +G E PYD I V A P L+DQLKPGG + +G+
Sbjct: 124 VRHGDGSKGWPEEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPVGSGPAQ 175
Score = 90.0 bits (224), Expect = 1e-20
Identities = 45/124 (36%), Positives = 65/124 (52%), Gaps = 19/124 (15%)
Query: 22 IGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKT 81
IG G + AP A +L L EL G +VL+IG+G+GY A+LA VG+
Sbjct: 49 IGCGQTISAPHM---------VARMLQLL--ELKPGDRVLEIGTGSGYQAAVLARLVGR- 96
Query: 82 GKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIE 141
V+ IE I +L ++A N+ E + + GDG KG+ +EAPYD I V +
Sbjct: 97 --VVSIERIEELAEQARRNL-----ETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAP 149
Query: 142 DIPE 145
++PE
Sbjct: 150 EVPE 153
Score = 69.2 bits (170), Expect = 2e-13
Identities = 29/70 (41%), Positives = 47/70 (67%), Gaps = 6/70 (8%)
Query: 380 DVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKS 439
+ A+ L++L+ LKPG +VL+IG+GSGY A +A +V G+V ++E IE+L QA ++
Sbjct: 59 HMVARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRN 113
Query: 440 MHTY-YPNLM 448
+ T Y N+
Sbjct: 114 LETLGYENVT 123
>gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 212
Score = 120 bits (304), Expect = 9e-32
Identities = 71/205 (34%), Positives = 103/205 (50%), Gaps = 16/205 (7%)
Query: 143 IPEGVRFGHIASPKVESVMRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQAL 202
I E +R G+I S KV + + R F+ + Y D P +G+G +S+ + A
Sbjct: 10 IEELIREGYIKSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTISAIHMVAIMC 69
Query: 203 EILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPN 262
E+L LK G KVL+IG+GSGY A +A +VG +GKV +E I +L +A K
Sbjct: 70 ELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKK-------T 120
Query: 263 LMEGG--RVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQLKPGGVMWFTIGNAE 320
L + G V+ + GDG G+ PYD IYV A P L++QLK GG+M +G+
Sbjct: 121 LKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAAGPDIPKPLIEQLKDGGIMVIPVGSYS 180
Query: 321 EMLKNNRRTESNLAVVKAHKKDHGE 345
+ L + + KK GE
Sbjct: 181 QELIRVEKDNGKI-----IKKKLGE 200
Score = 89.3 bits (222), Expect = 2e-20
Identities = 47/125 (37%), Positives = 71/125 (56%), Gaps = 16/125 (12%)
Query: 21 NIGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGK 80
IGYG + A A++ + L +L EG KVL+IG+G+GY A++A VGK
Sbjct: 52 EIGYGQTISAIHM---------VAIMCELL--DLKEGMKVLEIGTGSGYHAAVVAEIVGK 100
Query: 81 TGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSI 140
+GKV+ IE IP+L ++A + + V + ++GDG GY + APYD I+V +
Sbjct: 101 SGKVVTIERIPELAEKAKKTLKKLGYDNV-----EVIVGDGTLGYEENAPYDRIYVTAAG 155
Query: 141 EDIPE 145
DIP+
Sbjct: 156 PDIPK 160
Score = 58.9 bits (143), Expect = 5e-10
Identities = 24/48 (50%), Positives = 34/48 (70%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSM 440
LK G KVL+IG+GSGY A +A +VG +GKV +E I +L +A K++
Sbjct: 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTL 121
>gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase;
Reviewed.
Length = 212
Score = 119 bits (301), Expect = 3e-31
Identities = 58/197 (29%), Positives = 95/197 (48%), Gaps = 20/197 (10%)
Query: 152 IASPKVESVMRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKDYLKP 211
I +V + + R F+ + Y + +G G +S P + A+ E+L+ LKP
Sbjct: 21 ILDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLE--LKP 78
Query: 212 GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGR--V 269
G +VL+IG+GSGY A +AH+V +V++VE I+ L +A + L + G V
Sbjct: 79 GDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKR-------RLKQLGLHNV 128
Query: 270 QFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQLKPGGVMWFTIG-NAEEMLKNNRR 328
GDG +G A P+D I V A P L++QLK GG++ +G +++L R+
Sbjct: 129 SVRHGDGWKGWPAYAPFDRILVTAAAPEIPRALLEQLKEGGILVAPVGGEEQQLLTRVRK 188
Query: 329 TESNLAVVKAHKKDHGE 345
++ E
Sbjct: 189 RGGRF-----EREVLEE 200
Score = 61.0 bits (149), Expect = 1e-10
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 12/95 (12%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 112
EL G +VL+IG+G+GY A+LA V + V +E I L A + G
Sbjct: 75 ELKPGDRVLEIGTGSGYQAAVLAHLVRR---VFSVERIKTLQWEAKRR-------LKQLG 124
Query: 113 R--IKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 145
+ GDG KG+ AP+D I V + +IP
Sbjct: 125 LHNVSVRHGDGWKGWPAYAPFDRILVTAAAPEIPR 159
Score = 56.4 bits (137), Expect = 3e-09
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 5/54 (9%)
Query: 383 AQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQA 436
A+ E+L+ LKPG +VL+IG+GSGY A +AH+V +V++VE I+ L +A
Sbjct: 68 ARMTELLE--LKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEA 116
>gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 205
Score = 92.2 bits (229), Expect = 1e-21
Identities = 59/170 (34%), Positives = 88/170 (51%), Gaps = 6/170 (3%)
Query: 143 IPEGVRFGHIASPKVESVMRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQAL 202
+ E VR G I S +V+ M S+ R F+ Y D P L G+ +S+P + A
Sbjct: 6 VEELVREGIIKSERVKKAMLSVPREEFVMPEYRMMAYEDRPLPLFAGATISAPHMVAMMC 65
Query: 203 EILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPN 262
E+++ +PG K+L++G+GSGY A A + GKVY VE +++L A +++
Sbjct: 66 ELIEP--RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIE----R 119
Query: 263 LMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQLKPGGVM 312
L G V+ GDG+ G P+D I V A P L+ QLK GGV+
Sbjct: 120 LGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIPSALVRQLKDGGVL 169
Score = 53.3 bits (128), Expect = 4e-08
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 53 ELTE---GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFV 109
EL E G K+L++G+G+GY A+ A + + GKV +E + +L A N+
Sbjct: 66 ELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIE----RLG 121
Query: 110 KDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIP 144
G ++ GDG++G AP+D I V + IP
Sbjct: 122 YWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIP 156
Score = 41.7 bits (98), Expect = 3e-04
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 394 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQA 436
+PG K+L++G+GSGY A A + GKVY VE +++L A
Sbjct: 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYA 113
>gnl|CDD|234563 TIGR04364, methyltran_FxLD, methyltransferase, FxLD system.
Members of this family resemble occur regularly in the
vicinity of lantibiotic biosynthesis enzymes and their
probable target, the FxLD family of putative ribosomal
natural product precursor (TIGR04363). Members resemble
protein-L-isoaspartate O-methyltransferase (TIGR00080)
and a predicted methyltranserase, TIGR04188, of another
putative peptide modification system.
Length = 394
Score = 94.0 bits (234), Expect = 9e-21
Identities = 55/171 (32%), Positives = 80/171 (46%), Gaps = 21/171 (12%)
Query: 150 GHIASPKVESVMRSIDRRRFIERPIMNNPYWDIPQSL-----GFG---SVMSSPKVHAQA 201
G I SP+VE+ R++ R F + Y +++ G S +S+P + A
Sbjct: 16 GVIRSPRVEAAFRTVPRHLFAPGAPLEKAY-AANRAVVTKRDEDGAALSSVSAPHIQAMM 74
Query: 202 LEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSM--HTY 259
LE ++PG +VL+IGSG GY A +A +VGP+G+V V+ ED+ +A + Y
Sbjct: 75 LEQAG--VEPGMRVLEIGSG-GYNAALLAELVGPSGEVTTVDIDEDVTDRARACLAAAGY 131
Query: 260 YPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQLKPGG 310
+V V D G PYD I V P +DQL PGG
Sbjct: 132 -------PQVTVVLADAEAGVPELAPYDRIIVTVGAWDIPPAWLDQLAPGG 175
Score = 60.1 bits (146), Expect = 9e-10
Identities = 42/131 (32%), Positives = 59/131 (45%), Gaps = 20/131 (15%)
Query: 43 QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVI 102
QAM+L+ + G +VL+IGSG GY ALLA VG +G+V ++ + RA
Sbjct: 71 QAMMLEQA--GVEPGMRVLEIGSG-GYNAALLAELVGPSGEVTTVDIDEDVTDRA----- 122
Query: 103 SGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIP--------EGVRFGHIAS 154
++ VL D G + APYD I V DIP G G +
Sbjct: 123 RACLAAAGYPQVTVVLADAEAGVPELAPYDRIIVTVGAWDIPPAWLDQLAPG---GRLVV 179
Query: 155 P-KVESVMRSI 164
P ++ + RSI
Sbjct: 180 PLRMRGLTRSI 190
Score = 49.3 bits (118), Expect = 2e-06
Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 382 HAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSM 440
H QA+ + + ++PG +VL+IGSG GY A +A +VGP+G+V V+ ED+ +A +
Sbjct: 69 HIQAMMLEQAGVEPGMRVLEIGSG-GYNAALLAELVGPSGEVTTVDIDEDVTDRARACL 126
>gnl|CDD|234492 TIGR04188, methyltr_grsp, methyltransferase, ATP-grasp peptide
maturase system. Members of this protein family are
predicted SAM-dependent methyltransferases that
regularly occur in the context of a putative peptide
modification ATP-grasp enzyme (TIGR04187, related to
enzymes of microviridin maturation) and a putative
ribosomal peptide modification target (TIGR04186).
Length = 363
Score = 79.7 bits (197), Expect = 3e-16
Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 19/144 (13%)
Query: 189 GSVMSS---PKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHI 245
G SS P + A+ LE L ++ G +VL+IG+G+GY A + H +G V +VE
Sbjct: 84 GRPTSSSTQPSLVARMLEALD--VEDGHRVLEIGTGTGYSAALLCHRLG-DDNVTSVEVD 140
Query: 246 EDLVAQANKSMHT--YYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLM 303
L A+A ++ Y P + V GDG GH PYD I AV P +
Sbjct: 141 PGLAARAASALAAAGYAPTV--------VTGDGLLGHPPRAPYDRIIATCAVRRVPPAWL 192
Query: 304 DQLKPGGVMWFTIG---NAEEMLK 324
Q +PGGV+ T+ +++
Sbjct: 193 RQTRPGGVILTTLSGWLYGGGLVR 216
Score = 55.8 bits (135), Expect = 2e-08
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRA-THNVI 102
A +L+ L ++ +G +VL+IG+G GY ALL +G V +E P L RA +
Sbjct: 97 ARMLEAL--DVEDGHRVLEIGTGTGYSAALLCHRLG-DDNVTSVEVDPGLAARAASALAA 153
Query: 103 SGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIP 144
+G V V GDG G+ APYD I ++ +P
Sbjct: 154 AGYAPTV-------VTGDGLLGHPPRAPYDRIIATCAVRRVP 188
Score = 45.0 bits (107), Expect = 5e-05
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHT--YYPNLMEG 450
++ G +VL+IG+G+GY A + H +G V +VE L A+A ++ Y P ++ G
Sbjct: 105 VEDGHRVLEIGTGTGYSAALLCHRLG-DDNVTSVEVDPGLAARAASALAAAGYAPTVVTG 163
>gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 322
Score = 76.4 bits (188), Expect = 3e-15
Identities = 43/121 (35%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
Query: 190 SVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLV 249
S S P + A +E + L G +VL+IG G+GY A M+ +VG G V +VE+ +
Sbjct: 61 STSSQPSLMALFMEWV--GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKIC 118
Query: 250 AQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQLKPG 309
A +++ V FV GDG G PYDVI+V V P QLK G
Sbjct: 119 EIAKRNVRRLGIE-----NVIFVCGDGYYGVPEFAPYDVIFVTVGVDEVPETWFTQLKEG 173
Query: 310 G 310
G
Sbjct: 174 G 174
Score = 61.0 bits (148), Expect = 4e-10
Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 32 FQDNTKFSKFQQAMVLDDLSE--ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEH 89
+ D ++S Q ++ E L +G +VL+IG G GY A+++ VG+ G V+ +E+
Sbjct: 54 YDDGEEYSTSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEY 113
Query: 90 IPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 145
++ + A NV + + FV GDG G + APYD+I V ++++PE
Sbjct: 114 SRKICEIAKRNV-----RRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVGVDEVPE 164
Score = 44.1 bits (104), Expect = 9e-05
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSM 440
L G +VL+IG G+GY A M+ +VG G V +VE+ + A +++
Sbjct: 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNV 125
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 69.6 bits (171), Expect = 9e-15
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 211 PGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGG--R 268
PGA+VLDIG G+G L + P +V V+ +++ A + N R
Sbjct: 1 PGARVLDIGCGTGSLAI-ELARLFPGARVTGVDLSPEMLELARE-------NAKLALGPR 52
Query: 269 VQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQ----LKPGGVMWFT 315
+ FV GD + +D +++GG +L+D LKPGG +
Sbjct: 53 ITFVQGDAPDALDLLEGFDAVFIGGGGGDL-LELLDALASLLKPGGRLVLN 102
Score = 59.6 bits (145), Expect = 3e-11
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 56 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIK 115
G +VLDIG G G LA + +V G++ P++++ A N + RI
Sbjct: 1 PGARVLDIGCGTGSLAIELA-RLFPGARVTGVDLSPEMLELARENA-----KLALGPRIT 54
Query: 116 FVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 145
FV GD +D + +GG D+ E
Sbjct: 55 FVQGDAPDALDLLEGFDAVFIGGGGGDLLE 84
Score = 42.7 bits (101), Expect = 3e-05
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 395 PGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
PGA+VLDIG G+G L + P +V V+ +++ A +
Sbjct: 1 PGARVLDIGCGTGSLAI-ELARLFPGARVTGVDLSPEMLELARE 43
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This family
appears to be have methyltransferase activity.
Length = 151
Score = 62.1 bits (151), Expect = 1e-11
Identities = 40/153 (26%), Positives = 64/153 (41%), Gaps = 17/153 (11%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSM-HTYYPNLMEGG 267
LK G KVLD+G G+GYLT +A +GP +V ++ E+ + +A ++ Y N
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYEN----- 55
Query: 268 RVQFVDGDGRE---GHAAEGPYDVIYVGGAVHHYP-----FKLM-DQLKPGGVMW-FTIG 317
V+F+ GD E + +DV+ ++H P + + LKPGGV+
Sbjct: 56 -VEFIQGDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVSDPV 114
Query: 318 NAEEMLKNNRRTESNLAVVKAHKKDHGEWEEEF 350
E+ E A V +
Sbjct: 115 LLSELPALLEDLERLYAGVLEGAIGKKKLLTIL 147
Score = 53.2 bits (128), Expect = 2e-08
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 54 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR 113
L G KVLD+G G GY T +LA +G +V+GI+ + +++A N E
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYE-----N 55
Query: 114 IKFVLGD---GRKGYLDEAPYDIIHVGGSIEDIP 144
++F+ GD + L++ +D++ + +P
Sbjct: 56 VEFIQGDIEELPQLQLEDNSFDVVISNEVLNHLP 89
Score = 49.7 bits (119), Expect = 3e-07
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
LK G KVLD+G G+GYLT +A +GP +V ++ E+ + +A +
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKE 46
>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and
related methyltransferases [Translation, ribosomal
structure and biogenesis].
Length = 256
Score = 60.0 bits (146), Expect = 4e-10
Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGR 268
+ PG++VL+ G+GSG LTA +A VGP G V E ED A +++ G R
Sbjct: 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSE----FGLGDR 147
Query: 269 VQFVDGDGREGHAAEGPYDVIYV--GGAVHHYPFKLMDQLKPGGVMWFTIGNAEEMLK 324
V GD REG E D +++ + + D LKPGGV+ E++ K
Sbjct: 148 VTLKLGDVREG-IDEEDVDAVFLDLPDPWNVLE-HVSDALKPGGVVVVYSPTVEQVEK 203
Score = 55.0 bits (133), Expect = 2e-08
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 23/125 (18%)
Query: 54 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR 113
++ G +VL+ G+G+G TA LA VG G V E + A N+ EF R
Sbjct: 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENL----SEFGLGDR 147
Query: 114 IKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEGVRF-----------GHIA--SPKVESV 160
+ LGD R+ +DE D + D+P+ G + SP VE V
Sbjct: 148 VTLKLGDVRE-GIDEEDVDAV-----FLDLPDPWNVLEHVSDALKPGGVVVVYSPTVEQV 201
Query: 161 MRSID 165
++++
Sbjct: 202 EKTVE 206
Score = 49.2 bits (118), Expect = 1e-06
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSM 440
+ PG++VL+ G+GSG LTA +A VGP G V E ED A +++
Sbjct: 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENL 139
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 55.1 bits (133), Expect = 1e-09
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 15/111 (13%)
Query: 214 KVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVD 273
+VLD+G G+G L +A GP +V V+ + A K+ V+ +
Sbjct: 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAAL-----LADNVEVLK 53
Query: 274 GDGREGH-AAEGPYDVIYVGGAVHHYPFKLMDQ-------LKPGGVMWFTI 316
GD E A+ +DVI +HH L LKPGGV+ T+
Sbjct: 54 GDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLTL 104
Score = 45.1 bits (107), Expect = 4e-06
Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
Query: 59 KVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVL 118
+VLD+G G G LA G +V G++ P ++ A + + ++ +
Sbjct: 1 RVLDLGCGTGALALALASGPGA--RVTGVDISPVALELARKAAAALLAD-----NVEVLK 53
Query: 119 GDGRKGYLDE-APYDIIHVGGSIEDIPEGVR 148
GD + + +D+I + + E +
Sbjct: 54 GDAEELPPEADESFDVIISDPPLHHLVEDLA 84
Score = 31.2 bits (71), Expect = 0.35
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 398 KVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
+VLD+G G+G L +A GP +V V+ + A K
Sbjct: 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARK 39
>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain. This family
contains methyltransferase domains.
Length = 117
Score = 55.1 bits (133), Expect = 2e-09
Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 20/118 (16%)
Query: 212 GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQF 271
G +VLD G+GSG A GP +V VE + A A + RV+
Sbjct: 1 GDRVLDPGAGSGAFLLAAARA-GPDARVVGVELDPEAAALARRR----LALAGLAPRVRV 55
Query: 272 VDGDGRE-GHAAEGPYDVIYV-------------GGAVHHYPF-KLMDQLKPGGVMWF 314
V GD RE +G +D++ ++ + LKPGGV+
Sbjct: 56 VVGDARELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVV 113
Score = 40.9 bits (96), Expect = 2e-04
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 57 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKF 116
G +VLD G+G+G F A G +V+G+E P+ A + R++
Sbjct: 1 GDRVLDPGAGSGAFLLAAAR-AGPDARVVGVELDPEAAALARRRLALAGL----APRVRV 55
Query: 117 VLGDGRK-GYLDEAPYDII 134
V+GD R+ L + +D++
Sbjct: 56 VVGDARELLELPDGSFDLV 74
Score = 37.4 bits (87), Expect = 0.003
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 396 GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTY 443
G +VLD G+GSG A GP +V VE + A A + +
Sbjct: 1 GDRVLDPGAGSGAFLLAAARA-GPDARVVGVELDPEAAALARRRLALA 47
>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional.
Length = 241
Score = 56.9 bits (138), Expect = 4e-09
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 12/108 (11%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGR 268
++PG +VLD+G G G +A VGP G+V ++ E ++A A G
Sbjct: 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAK--ERAAG----LGPN 70
Query: 269 VQFVDGDGREGHAAEGPYDVIYVGGAVHHY--PFKLMDQ----LKPGG 310
V+FV GD +G +D + + H P + + + L+PGG
Sbjct: 71 VEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGG 118
Score = 51.1 bits (123), Expect = 3e-07
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 13/91 (14%)
Query: 42 QQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNV 101
+A + L+ + G +VLD+G G G LA VG G+V+GI+ ++ A
Sbjct: 7 YRARTFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERA 64
Query: 102 ISGNPEFVKDGRIKFVLGDG-----RKGYLD 127
P ++FV GD G D
Sbjct: 65 AGLGP------NVEFVRGDADGLPFPDGSFD 89
Score = 50.7 bits (122), Expect = 5e-07
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
++PG +VLD+G G G +A VGP G+V ++ E ++A A +
Sbjct: 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKE 62
>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 92
Score = 51.9 bits (125), Expect = 1e-08
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 19/105 (18%)
Query: 216 LDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGD 275
LD+G G+G L +A G +V V+ +++A A K +FV GD
Sbjct: 1 LDVGCGTGLLAEALARRGG--ARVTGVDLSPEMLALARKR-----------APRKFVVGD 47
Query: 276 GREGHAAEGPYDVIYVGGAVHH--YPFKLMDQ----LKPGGVMWF 314
+ + +DV+ +HH P + + + LKPGG +
Sbjct: 48 AEDLPFPDESFDVVVSSLVLHHLPDPERALREIARVLKPGGKLVI 92
Score = 38.8 bits (91), Expect = 5e-04
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 13/89 (14%)
Query: 61 LDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGD 120
LD+G G G LA G V G++ P+++ A KFV+GD
Sbjct: 1 LDVGCGTGLLAEALARRGGAR--VTGVDLSPEMLALARKR-----------APRKFVVGD 47
Query: 121 GRKGYLDEAPYDIIHVGGSIEDIPEGVRF 149
+ +D++ + +P+ R
Sbjct: 48 AEDLPFPDESFDVVVSSLVLHHLPDPERA 76
Score = 32.2 bits (74), Expect = 0.11
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 400 LDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
LD+G G+G L +A G +V V+ +++A A K
Sbjct: 1 LDVGCGTGLLAEALARRGG--ARVTGVDLSPEMLALARK 37
>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function
prediction only].
Length = 219
Score = 52.7 bits (127), Expect = 6e-08
Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 16/114 (14%)
Query: 208 YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGG 267
L ++L+IG+ GY MA + G++ +E E+ A + NL E G
Sbjct: 56 RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARE-------NLAEAG 108
Query: 268 ----RVQFVDGDGREGHA--AEGPYDVIYVGGAVHHYPF---KLMDQLKPGGVM 312
+ GD + + +G +D++++ YP + + L+PGG++
Sbjct: 109 VDDRIELLLGGDALDVLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGGLI 162
Score = 38.5 bits (90), Expect = 0.004
Identities = 34/151 (22%), Positives = 62/151 (41%), Gaps = 26/151 (17%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN------------ 100
L+ K++L+IG+ GY +A + G++ IE + + A N
Sbjct: 56 RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIEL 115
Query: 101 VISGNP----EFVKDGRIKFVLGDGRKG----YLDEAPYDIIHVGGSIEDIPEGVRF-GH 151
++ G+ + DG V D K YL+ A ++ GG I + + V F G
Sbjct: 116 LLGGDALDVLSRLLDGSFDLVFIDADKADYPEYLERA-LPLLRPGGLI--VADNVLFGGR 172
Query: 152 IASPKVESVMRSIDR-RRFIERPIMNNPYWD 181
+A P + + R F + ++ +P +D
Sbjct: 173 VADPSIRDARTQVRGVRDFNDY-LLEDPRYD 202
Score = 37.7 bits (88), Expect = 0.007
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 392 YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQA 436
L ++L+IG+ GY MA + G++ +E E+ A
Sbjct: 56 RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIA 100
>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed.
Length = 272
Score = 51.1 bits (123), Expect = 4e-07
Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTY-YPNLMEGG 267
LKPG VLD+GSG G+ A VGPTGKV V+ +++A+A + Y N
Sbjct: 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTN----- 129
Query: 268 RVQFVDGDGREGHAAEGPYDVI 289
V+F G+ A+ DVI
Sbjct: 130 -VEFRLGEIEALPVADNSVDVI 150
Score = 49.6 bits (119), Expect = 1e-06
Identities = 22/46 (47%), Positives = 29/46 (63%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
LKPG VLD+GSG G+ A VGPTGKV V+ +++A+A
Sbjct: 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARA 120
Score = 49.2 bits (118), Expect = 2e-06
Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 18/82 (21%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLA-WCVGKTGKVIGIEHIPQLVQRATHNVISG---NPEF 108
EL G+ VLD+GSG G F LA VG TGKVIG++ P+++ +A N N EF
Sbjct: 74 ELKPGETVLDLGSGGG-FDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEF 132
Query: 109 VKDGRIKFVLGDGRKGYLDEAP 130
R G ++ P
Sbjct: 133 -------------RLGEIEALP 141
>gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase.
This model represents the
S-adenosylmethionine-dependent O-methyltransferase
responsible for methylation of magnesium protoporphyrin
IX. This step is essentiasl for the biosynthesis of both
chlorophyll and bacteriochlorophyll. This model
encompasses two closely related clades, from
cyanobacteria (and plants) where it is called ChlM and
other photosynthetic bacteria where it is known as BchM
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Chlorophyll and bacteriochlorphyll].
Length = 219
Score = 49.0 bits (117), Expect = 1e-06
Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 10/111 (9%)
Query: 196 KVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKS 255
+ + L+ L G +VLD G G+G L+ +A V AV+ E +V A
Sbjct: 40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNR 96
Query: 256 MHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQL 306
G V+F D + G +D++ + HYP M +
Sbjct: 97 ----AQGRDVAGNVEFEVNDLL---SLCGEFDIVVCMDVLIHYPASDMAKA 140
Score = 40.2 bits (94), Expect = 0.001
Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 23/122 (18%)
Query: 47 LDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRATHNVISGN 105
LD L ++ +GK+VLD G G G + LA K G V ++ Q+VQ A +
Sbjct: 46 LDWLPKDPLKGKRVLDAGCGTGLLSIELA----KRGAIVKAVDISEQMVQMARNR----A 97
Query: 106 PEFVKDGRIKFVLGDGRKGYLDEAPYD-------IIHVGGSIEDIPEGVRFGHIASPKVE 158
G ++F + D +D +IH D+ + GH+AS E
Sbjct: 98 QGRDVAGNVEFEVNDLLS---LCGEFDIVVCMDVLIHY--PASDMAKA--LGHLASLTKE 150
Query: 159 SV 160
V
Sbjct: 151 RV 152
Score = 35.9 bits (83), Expect = 0.024
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 381 VHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSM 440
+ + L+ L G +VLD G G+G L+ +A V AV+ E +V A
Sbjct: 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNR- 96
Query: 441 HTYYPNLMEGGRVQF 455
G V+F
Sbjct: 97 ---AQGRDVAGNVEF 108
>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase;
Provisional.
Length = 198
Score = 47.9 bits (114), Expect = 2e-06
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 192 MSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQ 251
M+ ++ A AL L+ L+ G +LDIG G+G +T + +VG TGKVYAV+ E +
Sbjct: 23 MTKEEIRALALSKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINL 80
Query: 252 ANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGP-YDVIYVGG 293
++ + + + G+ E +D I++GG
Sbjct: 81 TRRNAEKF----GVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119
Score = 44.8 bits (106), Expect = 2e-05
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 384 QALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLV 433
+AL + K L+ G +LDIG G+G +T + +VG TGKVYAV+ E +
Sbjct: 29 RALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAI 78
Score = 39.4 bits (92), Expect = 0.002
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 54 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR 113
L +G +LDIG G G T + VG+TGKV ++ + + N +F
Sbjct: 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNA----EKFGVLNN 93
Query: 114 IKFVLGDGRKGYLDEAP-YDIIHVGGSIEDIPE 145
I + G+ + +D I +GG E + E
Sbjct: 94 IVLIKGEAPEILFTINEKFDRIFIGGGSEKLKE 126
>gnl|CDD|226591 COG4106, Tam, Trans-aconitate methyltransferase [General function
prediction only].
Length = 257
Score = 48.5 bits (116), Expect = 3e-06
Identities = 47/223 (21%), Positives = 83/223 (37%), Gaps = 41/223 (18%)
Query: 180 WDIPQSLGFGSVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKV 239
W+ Q L F + P A L+ +V+D+G G G T +A P +
Sbjct: 3 WNPDQYLQFEDERTRPARDLLARVPLE----RPRRVVDLGCGPGNSTELLARRW-PDAVI 57
Query: 240 YAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYP 299
++ ++A+A + + P+ F + D R + P D+++ + P
Sbjct: 58 TGIDSSPAMLAKAAQRL----PD------ATFEEADLRTWKPEQ-PTDLLFANAVLQWLP 106
Query: 300 ------FKLMDQLKPGGVMWFTIGNAEEMLKNNRRTESNLAVVKAHKKDHGEWEEEFMGR 353
+L+ QL PGGV+ A +M +N S+ + + D + +E GR
Sbjct: 107 DHPELLPRLVSQLAPGGVL------AVQM-PDNLDEPSHRLMRET--ADEAPFAQELGGR 157
Query: 354 LWRLPALASVEEQKYWYHPNGFYDDLDVHAQALEIL-KDYLKP 395
L S P +Y+ L A ++I Y
Sbjct: 158 GLTRAPLPS---------PAAYYELLAPLACRVDIWHTTYYHQ 191
>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family.
Length = 233
Score = 46.7 bits (111), Expect = 8e-06
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 15/109 (13%)
Query: 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGG-- 267
K G K LD+ G+G T ++ G +GKV ++ E+++ + K E G
Sbjct: 46 KRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEK-------KAKEEGKY 98
Query: 268 RVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKL------MDQLKPGG 310
++F+ G+ E + +D++ + + ++P L LKPGG
Sbjct: 99 NIEFLQGNAEELPFEDDSFDIVTISFGLRNFPDYLKVLKEAFRVLKPGG 147
Score = 35.9 bits (83), Expect = 0.030
Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 56 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG--- 112
G K LD+ G G +T L+ G +GKV+G++ N++ + K+
Sbjct: 47 RGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINE--------NMLKEGEKKAKEEGKY 98
Query: 113 RIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 145
I+F+ G+ + ++ +DI+ + + + P+
Sbjct: 99 NIEFLQGNAEELPFEDDSFDIVTISFGLRNFPD 131
Score = 35.9 bits (83), Expect = 0.032
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 394 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRV 453
K G K LD+ G+G T ++ G +GKV ++ E+++ + K E G+
Sbjct: 46 KRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEK-------KAKEEGKY 98
Query: 454 Q 454
Sbjct: 99 N 99
>gnl|CDD|201699 pfam01269, Fibrillarin, Fibrillarin.
Length = 229
Score = 46.8 bits (112), Expect = 8e-06
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 208 YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIE----DLVAQANK 254
+KPG+KVL +G+ SG + ++ +VGP G VYAVE +L+ A K
Sbjct: 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRELINMAKK 120
Score = 46.8 bits (112), Expect = 8e-06
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 392 YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIE----DLVAQANK 438
+KPG+KVL +G+ SG + ++ +VGP G VYAVE +L+ A K
Sbjct: 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRELINMAKK 120
Score = 28.3 bits (64), Expect = 8.0
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 56 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIP----QLVQRATH--NVI 102
G KVL +G+ +G + ++ VG G V +E P +L+ A N++
Sbjct: 73 PGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRELINMAKKRPNIV 125
>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 97
Score = 43.9 bits (104), Expect = 9e-06
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 215 VLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDG 274
+LD+G G+G + +A V V+ ++ + A + + P V+FV
Sbjct: 1 ILDLGCGTGRVLRALARAGPS--SVTGVDISKEALELAKERLRDKGPK------VRFVVA 52
Query: 275 DGREGHAAEGPYDVIYVGGAVHHY 298
D R+ EG +D++ G Y
Sbjct: 53 DARDLPFEEGSFDLVICAGLSLDY 76
Score = 30.8 bits (70), Expect = 0.37
Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 14/95 (14%)
Query: 60 VLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLG 119
+LD+G G G LA V G++ + ++ A + P+ ++FV+
Sbjct: 1 ILDLGCGTGRVLRALARAGPS--SVTGVDISKEALELAKERLRDKGPK------VRFVVA 52
Query: 120 DGRKGYLDEAPYDIIHVGG------SIEDIPEGVR 148
D R +E +D++ G S + + +R
Sbjct: 53 DARDLPFEEGSFDLVICAGLSLDYLSPKQLRALLR 87
Score = 28.1 bits (63), Expect = 3.6
Identities = 12/85 (14%), Positives = 30/85 (35%), Gaps = 15/85 (17%)
Query: 399 VLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFTEM 458
+LD+G G+G + +A V V+ ++ + A + + P +
Sbjct: 1 ILDLGCGTGRVLRALARAGPS--SVTGVDISKEALELAKERLRDKGPKV----------- 47
Query: 459 AEKVMQLRVHMMSFTLEEQSIIILS 483
+ + + F ++I +
Sbjct: 48 --RFVVADARDLPFEEGSFDLVICA 70
>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase
(decarboxylating), CbiT subunit. This model recognizes
the CbiT methylase which is responsible, in part (along
with CbiE), for methylating precorrin-6y (or
cobalt-precorrin-6y) at both the 5 and 15 positions as
well as the concomitant decarbozylation at C-12. In many
organisms, this protein is fused to the CbiE subunit.
The fused protein, when found in organisms catalyzing
the oxidative version of the cobalamin biosynthesis
pathway, is called CobL [Biosynthesis of cofactors,
prosthetic groups, and carriers, Heme, porphyrin, and
cobalamin].
Length = 124
Score = 44.6 bits (106), Expect = 1e-05
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 26/132 (19%)
Query: 192 MSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQ 251
M+ +V A L L+ L+PG + DIG+G+G +T A +V G+VYA+E + +
Sbjct: 2 MTKREVRALTLSKLR--LRPGDVLWDIGAGTGSVTIEAARLVPN-GRVYAIERNPEAL-- 56
Query: 252 ANKSMHTYYPNLMEGGRVQFVDGDGR--EGHAAEGPY------DVIYVGGAVHHYPFKL- 302
+L+E +F + EG A E P D ++VGG+ L
Sbjct: 57 ----------DLIERNLRRFGVSNIVIVEGDAPEAPEDLLPDPDAVFVGGSGGLLQEILE 106
Query: 303 --MDQLKPGGVM 312
+L+PGG +
Sbjct: 107 AVERRLRPGGRI 118
Score = 39.2 bits (92), Expect = 7e-04
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 381 VHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 427
V A L L+ L+PG + DIG+G+G +T A +V G+VYA+E
Sbjct: 7 VRALTLSKLR--LRPGDVLWDIGAGTGSVTIEAARLVPN-GRVYAIE 50
Score = 33.1 bits (76), Expect = 0.10
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 26/111 (23%)
Query: 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS 103
A+ L L L G + DIG+G G T A V G+V IE P+ + ++I
Sbjct: 9 ALTLSKL--RLRPGDVLWDIGAGTGSVTIEAARLVPN-GRVYAIERNPEAL-----DLIE 60
Query: 104 GNPEFVKDGRIKFVLGDGR--KGYLDEAPY------DIIHVGGS---IEDI 143
N +F + + +G EAP D + VGGS +++I
Sbjct: 61 RNLR-------RFGVSNIVIVEGDAPEAPEDLLPDPDAVFVGGSGGLLQEI 104
>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase,
release factor-specific. Members of this protein family
are HemK (PrmC), a protein once thought to be involved
in heme biosynthesis but now recognized to be a
protein-glutamine methyltransferase that modifies the
peptide chain release factors. All members of the seed
alignment are encoded next to the release factor 1 gene
(prfA) and confirmed by phylogenetic analysis. SIMBAL
analysis (manuscript in prep.) shows the motif
[LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers
specificity for the release factors rather than for
ribosomal protein L3 [Protein fate, Protein modification
and repair].
Length = 251
Score = 46.3 bits (111), Expect = 1e-05
Identities = 41/152 (26%), Positives = 60/152 (39%), Gaps = 46/152 (30%)
Query: 200 QALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIED--LVAQANKSMH 257
ALE LK K +VLD+G+GSG + +A P +V AV+ + VA+ N +
Sbjct: 79 AALERLK---KGPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARL 134
Query: 258 TYYPNLMEGGRVQFVDGDGREGHAAEGPYDVI-----YVGGAVHHY---------PF--- 300
L V+F+ D E G +D+I Y+ A H P
Sbjct: 135 ----GL---DNVEFLQSDWFEP-LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLAL 186
Query: 301 -----------KLMDQ----LKPGGVMWFTIG 317
+++ Q LKPGG + IG
Sbjct: 187 FGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG 218
Score = 38.6 bits (91), Expect = 0.004
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 384 QALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
ALE LK K +VLD+G+GSG + +A P +V AV+ + +A A K
Sbjct: 79 AALERLK---KGPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARK 129
Score = 29.7 bits (68), Expect = 3.0
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 9/86 (10%)
Query: 50 LSEELTEGKKVLDIGSGNGYFT-ALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEF 108
L +VLD+G+G+G AL +V ++ P+ + A N +
Sbjct: 81 LERLKKGPLRVLDLGTGSGAIALALAKER--PDARVTAVDISPEALAVARKNAARLGLD- 137
Query: 109 VKDGRIKFVLGDGRKGYLDEAPYDII 134
++F+ D + L +D+I
Sbjct: 138 ----NVEFLQSDWFEP-LPGGKFDLI 158
>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain. This domain is
found in ribosomal RNA small subunit methyltransferase C
as well as other methyltransferases .
Length = 170
Score = 44.9 bits (107), Expect = 1e-05
Identities = 36/143 (25%), Positives = 49/143 (34%), Gaps = 32/143 (22%)
Query: 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRV 269
G KVLD+G G G L A +A P +V V+ + A N +E G V
Sbjct: 30 PLGGKVLDLGCGYGVLGAALAKR-SPDLEVTMVDINARALESARA---NLAANGLENGEV 85
Query: 270 QFVDGDGREGHAAEGPYDVI------YVGGAVHHYPFKLM-----DQLKPGGVMWF---- 314
D G +D+I + G A + + LKPGG +W
Sbjct: 86 --FWSDLYSA-VEPGKFDLIISNPPFHAGKATDYDVAQRFIAGAARHLKPGGELWIVANR 142
Query: 315 ----------TIGNAEEMLKNNR 327
GN E + K N
Sbjct: 143 HLGYPSLLEELFGNVEVLAKTNG 165
Score = 34.1 bits (79), Expect = 0.085
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
Query: 371 HPNGF-YDDLDVHAQAL-EILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEH 428
P F + LD+ ++ L L G KVLD+G G G L A +A P +V V+
Sbjct: 7 LPGVFSHGRLDIGSRLLLSHLPK--PLGGKVLDLGCGYGVLGAALAKR-SPDLEVTMVDI 63
Query: 429 IEDLVAQANKSMHTYYPNLMEGGRV 453
+ A N +E G V
Sbjct: 64 NARALESARA---NLAANGLENGEV 85
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional.
Length = 293
Score = 46.3 bits (110), Expect = 2e-05
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 208 YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 243
+KPG+KVL +G+ SG + ++ +VGP G VYAVE
Sbjct: 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVE 164
Score = 46.3 bits (110), Expect = 2e-05
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 392 YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 427
+KPG+KVL +G+ SG + ++ +VGP G VYAVE
Sbjct: 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVE 164
>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].
Length = 187
Score = 44.9 bits (107), Expect = 2e-05
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 14/125 (11%)
Query: 192 MSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQ 251
M+ ++ A L L+ +PG ++ DIG+G+G +T A + GP+G+V A+E E+ +
Sbjct: 17 MTKEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALEL 73
Query: 252 ANKSMHTYYPNLMEGG--RVQFVDGDGREGHAAEGPYDVIYVGGAV--HHYPFKLMDQLK 307
+ N G ++ V+GD E D I++GG ++LK
Sbjct: 74 IER-------NAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGGGNIEEILEAAWERLK 126
Query: 308 PGGVM 312
PGG +
Sbjct: 127 PGGRL 131
Score = 38.0 bits (89), Expect = 0.004
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWC-VGKTGKVIGIEHIPQLVQRATHNVI 102
A+ L L G ++ DIG+G G T + W G +G+VI IE + ++ N
Sbjct: 24 ALTLSKL--RPRPGDRLWDIGAGTGSIT--IEWALAGPSGRVIAIERDEEALELIERNA- 78
Query: 103 SGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGS--IEDIPE 145
++ V GD + D D I +GG IE+I E
Sbjct: 79 ----ARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGGGNIEEILE 119
Score = 37.6 bits (88), Expect = 0.006
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 380 DVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 427
++ A L L+ +PG ++ DIG+G+G +T A + GP+G+V A+E
Sbjct: 21 EIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIE 65
>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 154
Score = 44.0 bits (104), Expect = 2e-05
Identities = 35/128 (27%), Positives = 46/128 (35%), Gaps = 28/128 (21%)
Query: 199 AQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHT 258
A+ L L LKPG +VLDIG G+G L + G V V D A
Sbjct: 10 ARLLARLLPRLKPGGRVLDIGCGTGILLRLLRE-RGF--DVTGV----DPSPAAVLIFSL 62
Query: 259 YYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHH--YPFKLMDQ----LKPGGVM 312
+ G YD+I + H P L+ Q LKPGGV+
Sbjct: 63 FDAPDPA---------------VLAGKYDLITAFEVLEHLPDPPALLQQLRELLKPGGVL 107
Query: 313 WFTIGNAE 320
+ A+
Sbjct: 108 LISTPLAD 115
Score = 35.5 bits (82), Expect = 0.019
Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 47 LDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRATHNVISGN 105
L L L G +VLDIG G G LL + G V G++ P ++
Sbjct: 13 LARLLPRLKPGGRVLDIGCGTGILLRLLR----ERGFDVTGVD--PSPAAVLIFSLFDAP 66
Query: 106 PEFVKDGRIKFVL 118
V G+ +
Sbjct: 67 DPAVLAGKYDLIT 79
Score = 33.6 bits (77), Expect = 0.099
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 383 AQALEILKDYLKPGAKVLDIGSGSGYLTACMA 414
A+ L L LKPG +VLDIG G+G L +
Sbjct: 10 ARLLARLLPRLKPGGRVLDIGCGTGILLRLLR 41
>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 98
Score = 42.7 bits (101), Expect = 2e-05
Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 11/102 (10%)
Query: 216 LDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGD 275
LDIG G+G L + P + V+ + A + + RV+ D
Sbjct: 1 LDIGCGTGTLLRALL-EALPGLEYTGVDISPAALEAAAERLAALGLLDAV--RVRLDVLD 57
Query: 276 GREGHAAEGPYDVIYVGGAVHH--YPFKLMDQ----LKPGGV 311
+ G +DV+ +HH P ++ LKPGGV
Sbjct: 58 AIDLD--PGSFDVVVASNVLHHLADPRAVLRNLRRLLKPGGV 97
Score = 29.7 bits (67), Expect = 0.85
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 61 LDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGD 120
LDIG G G L + G++ P ++ A + + R++ + D
Sbjct: 1 LDIGCGTGTLLRALLEA-LPGLEYTGVDISPAALEAAAERLAALGLLDAV--RVRLDVLD 57
Query: 121 GRKGYLDEAPYDIIHVGGSIEDIPE 145
LD +D++ + + +
Sbjct: 58 A--IDLDPGSFDVVVASNVLHHLAD 80
>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 257
Score = 45.3 bits (104), Expect = 3e-05
Identities = 43/239 (17%), Positives = 75/239 (31%), Gaps = 14/239 (5%)
Query: 164 IDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSG 223
+ Y + + L +++ + + L L G VLDIG G+G
Sbjct: 1 DSLLSAELLSRILELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLGVLDIGCGTG 60
Query: 224 YLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGH--- 280
L +A + G V V+ +++A A G V FV D G
Sbjct: 61 RLAL-LARLGGRGAYVVGVDLSPEMLALARARAEGA-----GLGLVDFVVADALGGVLPF 114
Query: 281 AAEGPYDVIYVGGAVHHYPF-----KLMDQLKPGGVMWFTIGNAEEMLKNNRRTESNLAV 335
+D++ +H P +L+ LKPGG + + + +L+
Sbjct: 115 EDSASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDGLLEGRLAALLGFGD 174
Query: 336 VKAHKKDHGEWEEEFMGRLWRLPALASVEEQKYWYHPNGFYDDLDVHAQALEILKDYLK 394
+ D E + + G L+ LE+L L+
Sbjct: 175 PVLERGDILLELEALLRLELLDLEELLGLLGELELERGGLARLLEELRLLLELLALGLE 233
Score = 37.2 bits (83), Expect = 0.012
Identities = 44/233 (18%), Positives = 75/233 (32%), Gaps = 14/233 (6%)
Query: 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS 103
+++ L L G VLDIG G G LLA G+ V+G++ P+++ A
Sbjct: 36 LLLVLRLLRLLPGGLGVLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARA-- 92
Query: 104 GNPEFVKDGRIKFVLGDGRKGYL---DEAPYDIIHVGGSIEDIPEGVRFGHIASPKVESV 160
E G + FV+ D G L D A +D++ + +P + V
Sbjct: 93 ---EGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLHLLPPAKALRELL-----RV 144
Query: 161 MRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKDYLKPGAKVLDIGS 220
++ R + + LGFG + LE L + L
Sbjct: 145 LKPGGRLVLSDLLRDGLLEGRLAALLGFGDPVLERGDILLELEALLRLELLDLEELLGLL 204
Query: 221 GSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVD 273
G L + ++ L A+ + + R +
Sbjct: 205 GELELERGGLARLLEELRLLLELLALGLEARGFRLLLLLKGARELVIRARIKA 257
Score = 33.3 bits (73), Expect = 0.20
Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 1/88 (1%)
Query: 351 MGRLWRLPALASVEEQKYWYHPNGFYDDLDVHAQALEILKDYLKPGAKVLDIGSGSGYLT 410
+ L + + + + L L G VLDIG G+G L
Sbjct: 4 LSAELLSRILELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLGVLDIGCGTGRLA 63
Query: 411 ACMAHMVGPTGKVYAVEHIEDLVAQANK 438
+A + G V V+ +++A A
Sbjct: 64 L-LARLGGRGAYVVGVDLSPEMLALARA 90
>gnl|CDD|222236 pfam13578, Methyltransf_24, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 105
Score = 41.1 bits (97), Expect = 9e-05
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 17/107 (15%)
Query: 216 LDIGSGSGYLTACMAHMVGP--TGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVD 273
++IG SG T +A + G++Y+++ A AN RV+ +
Sbjct: 1 VEIGVYSGVSTLWLAQALKDNGLGRLYSIDPWPGAEAGAN------LRKAGLADRVRLLR 54
Query: 274 GDGRE--GHAAEGPYDVIYVGGAVHHYPFKLMD------QLKPGGVM 312
GD E +G D++++ G H Y L D L PGG++
Sbjct: 55 GDSLEALARLPDGSIDLLFIDGD-HTYEAVLADLELWLPLLAPGGII 100
Score = 34.6 bits (80), Expect = 0.018
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 10/83 (12%)
Query: 61 LDIGSGNGYFTALLAWCV--GKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVL 118
++IG +G T LA + G++ I+ P A + D R++ +
Sbjct: 1 VEIGVYSGVSTLWLAQALKDNGLGRLYSIDPWPGAEAGAN-----LRKAGLAD-RVRLLR 54
Query: 119 GDGRK--GYLDEAPYDIIHVGGS 139
GD + L + D++ + G
Sbjct: 55 GDSLEALARLPDGSIDLLFIDGD 77
>gnl|CDD|227135 COG4798, COG4798, Predicted methyltransferase [General function
prediction only].
Length = 238
Score = 43.3 bits (102), Expect = 1e-04
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAV 242
LKPGA V+D+ G GY T + VGP GKVYA
Sbjct: 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAY 79
Score = 43.3 bits (102), Expect = 1e-04
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAV 426
LKPGA V+D+ G GY T + VGP GKVYA
Sbjct: 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAY 79
Score = 32.9 bits (75), Expect = 0.26
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIG 86
L G V+D+ G GYFT + + VG GKV
Sbjct: 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYA 78
>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC. This enzyme,
which is found in biotin biosynthetic gene clusters in
proteobacteria, firmicutes, green-sulfur bacteria,
fusobacterium and bacteroides, is believed to carry out
an enzymatic step prior to the formation of pimeloyl-CoA
(although attribution of this annotation is not
traceable). The enzyme appears related to
methyltransferases by homology [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 240
Score = 42.7 bits (101), Expect = 2e-04
Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 17/122 (13%)
Query: 202 LEILKDYLKP-GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYY 260
L +LK+ A VLDIG G+GYLT + P + A + ++AQA
Sbjct: 24 LALLKEKGIFIPASVLDIGCGTGYLTRALLKR-FPQAEFIANDISAGMLAQAKTK----- 77
Query: 261 PNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVH--HYP----FKLMDQLKPGGVMWF 314
VQF+ GD + + +D+I A+ +L LKPGG++ F
Sbjct: 78 ----LSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAF 133
Query: 315 TI 316
+
Sbjct: 134 ST 135
Score = 33.0 bits (76), Expect = 0.26
Identities = 27/109 (24%), Positives = 39/109 (35%), Gaps = 28/109 (25%)
Query: 37 KFSKFQQAMV--LDDLSEELT--EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHI-- 90
+ +K Q+ M L L +E VLDIG G GY T L K
Sbjct: 11 RHAKIQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALL-------KRFPQAEFIA 63
Query: 91 -----PQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 134
L Q T ++F+ GD K L+++ +D+I
Sbjct: 64 NDISAGMLAQAKTKL----------SENVQFICGDAEKLPLEDSSFDLI 102
Score = 32.6 bits (75), Expect = 0.35
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 386 LEILKDYLKP-GAKVLDIGSGSGYLTA 411
L +LK+ A VLDIG G+GYLT
Sbjct: 24 LALLKEKGIFIPASVLDIGCGTGYLTR 50
>gnl|CDD|173391 PTZ00098, PTZ00098, phosphoethanolamine N-methyltransferase;
Provisional.
Length = 263
Score = 41.1 bits (96), Expect = 8e-04
Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 18/122 (14%)
Query: 203 EILKD-YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYP 261
+IL D L +KVLDIGSG G C V+ V+ E +V A
Sbjct: 43 KILSDIELNENSKVLDIGSGLG--GGCKYINEKYGAHVHGVDICEKMVNIAKLRNS---- 96
Query: 262 NLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPF----KLMDQ----LKPGGVMW 313
+ +++F D + E +D+IY A+ H + KL ++ LKP G++
Sbjct: 97 ---DKNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILL 153
Query: 314 FT 315
T
Sbjct: 154 IT 155
Score = 32.2 bits (73), Expect = 0.50
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 387 EILKD-YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQAN 437
+IL D L +KVLDIGSG G C V+ V+ E +V A
Sbjct: 43 KILSDIELNENSKVLDIGSGLG--GGCKYINEKYGAHVHGVDICEKMVNIAK 92
>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors
[Translation, ribosomal structure and biogenesis].
Length = 280
Score = 41.2 bits (97), Expect = 8e-04
Identities = 39/166 (23%), Positives = 58/166 (34%), Gaps = 40/166 (24%)
Query: 212 GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQF 271
++LD+G+GSG + +A GP +V AV+ D +A A ++ L RV
Sbjct: 111 DKRILDLGTGSGAIAIALAKE-GPDAEVIAVDISPDALALARENAERN--GL---VRVLV 164
Query: 272 VDGDGREGHAAEGPYDVI-----YV-------------------------GGAVHHYPFK 301
V D G +D+I Y+ G V+
Sbjct: 165 VQSDL--FEPLRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILG 222
Query: 302 LMDQ-LKPGGVMWFTIG-NAEEMLKNNRRTESNLAVVKAHKKDHGE 345
LKPGGV+ IG E +K +V+ K G
Sbjct: 223 EAPDILKPGGVLILEIGLTQGEAVKALFEDTGFFEIVETLKDLFGR 268
Score = 34.2 bits (79), Expect = 0.10
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 396 GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 427
++LD+G+GSG + +A GP +V AV+
Sbjct: 111 DKRILDLGTGSGAIAIALAKE-GPDAEVIAVD 141
>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent
methyltransferase; Provisional.
Length = 275
Score = 40.5 bits (96), Expect = 0.001
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 13/92 (14%)
Query: 200 QALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTY 259
ALE L LK +VLD+G+GSG + +A P +V AV+ + +A A +
Sbjct: 99 WALEALL--LKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARR----- 150
Query: 260 YPN--LMEGGRVQFVDGDGREGHAAEGPYDVI 289
N G RV+F+ GD E G +D+I
Sbjct: 151 --NAKHGLGARVEFLQGDWFEP-LPGGRFDLI 179
Score = 35.1 bits (82), Expect = 0.057
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 384 QALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
ALE L LK +VLD+G+GSG + +A P +V AV+ + +A A +
Sbjct: 99 WALEALL--LKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARR 150
>gnl|CDD|225137 COG2227, UbiG,
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol
methylase [Coenzyme metabolism].
Length = 243
Score = 40.4 bits (95), Expect = 0.001
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 18/114 (15%)
Query: 211 PGAKVLDIGSGSGYLTACMAHMVGPTGK-VYAVEHIEDLVAQANKSMHTYYPNLMEGGRV 269
PG +VLD+G G G L+ +A + G V ++ E + A +H L G +
Sbjct: 59 PGLRVLDVGCGGGILSEPLARL----GASVTGIDASEKPIEVA--KLHA----LESGVNI 108
Query: 270 QFVDGDGREGHAAEGPYDVIYVGGAVHHYP------FKLMDQLKPGGVMWF-TI 316
+ + +A G +DV+ + H P +KPGG+++ TI
Sbjct: 109 DYRQATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTI 162
Score = 29.2 bits (66), Expect = 4.6
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 395 PGAKVLDIGSGSGYLTACMAHMVGPTGK-VYAVEHIEDLVAQA 436
PG +VLD+G G G L+ +A + G V ++ E + A
Sbjct: 59 PGLRVLDVGCGGGILSEPLARL----GASVTGIDASEKPIEVA 97
>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA).
This family consists of several Ribosomal protein L11
methyltransferase (EC:2.1.1.-) sequences.
Length = 294
Score = 40.3 bits (95), Expect = 0.001
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 202 LEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDL---VAQAN 253
LE L+ +KPG VLD+G GSG L A A +G KV V+ I+ + A+ N
Sbjct: 151 LEALESLVKPGETVLDVGCGSGIL-AIAALKLGA-KKVVGVD-IDPVAVRAAKEN 202
Score = 40.3 bits (95), Expect = 0.001
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 386 LEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDL---VAQAN 437
LE L+ +KPG VLD+G GSG L A A +G KV V+ I+ + A+ N
Sbjct: 151 LEALESLVKPGETVLDVGCGSGIL-AIAALKLGA-KKVVGVD-IDPVAVRAAKEN 202
Score = 29.5 bits (67), Expect = 3.5
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 14/93 (15%)
Query: 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG--KVIGIEHIPQLVQRATHNV 101
A+ L+ L + G+ VLD+G G+G +LA K G KV+G++ P V+ A N
Sbjct: 148 ALCLEALESLVKPGETVLDVGCGSG----ILAIAALKLGAKKVVGVDIDPVAVRAAKEN- 202
Query: 102 ISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 134
N V+ ++ GD +G D++
Sbjct: 203 AELNG--VEAQLEVYLPGDLPEG-----KADVV 228
>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional.
Length = 188
Score = 39.1 bits (92), Expect = 0.002
Identities = 17/79 (21%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 56 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIK 115
+G +VL++G+G+G + KV+G++ P V+ A N N +++ ++
Sbjct: 23 KGDRVLEVGTGSGI---VAIVAAKNGKKVVGVDINPYAVECAKCNAKLNN---IRNNGVE 76
Query: 116 FVLGDGRKGYLDEAPYDII 134
+ D + + + +D+I
Sbjct: 77 VIRSDLFEPFRGDK-FDVI 94
Score = 38.7 bits (91), Expect = 0.002
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 203 EILKDYL--KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 243
+L + K G +VL++G+GSG + A KV V+
Sbjct: 13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVD 52
Score = 38.7 bits (91), Expect = 0.002
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 387 EILKDYL--KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 427
+L + K G +VL++G+GSG + A KV V+
Sbjct: 13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVD 52
>gnl|CDD|237852 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Provisional.
Length = 258
Score = 39.5 bits (93), Expect = 0.002
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 17/88 (19%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 112
E T+G VL+IG G G T LA + KV IE P+L + + + G
Sbjct: 26 EDTDGDPVLEIGPGKGALTDELA---KRAKKVYAIELDPRLAEFL-------RDDEIAAG 75
Query: 113 RIKFVLGDGRKGYLDEA-------PYDI 133
++ + GD K L E PY I
Sbjct: 76 NVEIIEGDALKVDLPEFNKVVSNLPYQI 103
Score = 34.1 bits (79), Expect = 0.11
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 10/70 (14%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGR 268
G VL+IG G G LT +A KVYA+E L G
Sbjct: 27 DTDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIAA-------GN 76
Query: 269 VQFVDGDGRE 278
V+ ++GD +
Sbjct: 77 VEIIEGDALK 86
Score = 31.4 bits (72), Expect = 0.87
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
G VL+IG G G LT +A KVYA+E L
Sbjct: 27 DTDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRD 69
>gnl|CDD|219979 pfam08704, GCD14, tRNA methyltransferase complex GCD14 subunit.
GCD14 is a subunit of the tRNA methyltransferase complex
and is required for 1-methyladenosine modification and
maturation of initiator methionyl-tRNA.
Length = 309
Score = 39.8 bits (93), Expect = 0.002
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQA 252
LKPG+ V + G+GSG L+ +A V PTG +Y E E +A
Sbjct: 100 LKPGSVVCESGTGSGSLSHAIARTVAPTGHLYTFEFHEQRADKA 143
Score = 39.8 bits (93), Expect = 0.002
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQA 436
LKPG+ V + G+GSG L+ +A V PTG +Y E E +A
Sbjct: 100 LKPGSVVCESGTGSGSLSHAIARTVAPTGHLYTFEFHEQRADKA 143
>gnl|CDD|201880 pfam01596, Methyltransf_3, O-methyltransferase. Members of this
family are O-methyltransferases. The family includes
catechol o-methyltransferase, caffeoyl-CoA
O-methyltransferase and a family of bacterial
O-methyltransferases that may be involved in antibiotic
production.
Length = 204
Score = 38.9 bits (91), Expect = 0.002
Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 14/133 (10%)
Query: 189 GSVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDL 248
S M Q L +L + + L+IG +GY A + GK+ A + I+
Sbjct: 23 LSPMQISPEEGQFLSMLLKLIGA-KRTLEIGVFTGYSLLATALALPEDGKITACD-IDPE 80
Query: 249 VAQANKSMHTYYPNLMEGGRVQFVDGDGRE------GHAAEGPYDVIYVGGAVHHYPF-- 300
+ + ++ F GD G +D I+V +YP
Sbjct: 81 AYEIGLP---FIQKAGVADKISFRLGDALPTLEELVKDKPLGEFDFIFVDADKSNYPNYY 137
Query: 301 -KLMDQLKPGGVM 312
+L++ +K GG++
Sbjct: 138 ERLLELVKVGGLI 150
Score = 29.2 bits (66), Expect = 3.2
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 12/75 (16%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVK-- 110
+L K+ L+IG GY A + + GK+ + P+ + F++
Sbjct: 41 KLIGAKRTLEIGVFTGYSLLATALALPEDGKITACDIDPEAYEIGL--------PFIQKA 92
Query: 111 --DGRIKFVLGDGRK 123
+I F LGD
Sbjct: 93 GVADKISFRLGDALP 107
Score = 28.1 bits (63), Expect = 8.9
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 396 GAK-VLDIGSGSGYLTACMAHMVGPTGKVYAVE 427
GAK L+IG +GY A + GK+ A +
Sbjct: 44 GAKRTLEIGVFTGYSLLATALALPEDGKITACD 76
>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis
methyltransferase; Reviewed.
Length = 239
Score = 39.4 bits (93), Expect = 0.003
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGR 268
++PG KVLD+ G+G L +A VG TG+V ++ E ++A + +L G
Sbjct: 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREK----LRDLGLSGN 104
Query: 269 VQFVDGD 275
V+FV GD
Sbjct: 105 VEFVQGD 111
Score = 37.8 bits (89), Expect = 0.006
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAV 426
++PG KVLD+ G+G L +A VG TG+V +
Sbjct: 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGL 82
Score = 33.6 bits (78), Expect = 0.18
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 22/73 (30%)
Query: 57 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGN---------PE 107
G KVLD+ G G LA VGKTG+V+G++ S +
Sbjct: 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLD-------------FSEGMLAVGREKLRD 98
Query: 108 FVKDGRIKFVLGD 120
G ++FV GD
Sbjct: 99 LGLSGNVEFVQGD 111
>gnl|CDD|215900 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase.
Length = 254
Score = 39.2 bits (92), Expect = 0.003
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 12/85 (14%)
Query: 194 SPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQAN 253
+PKV + ++ K L+ VL+IG G G LT +A +V A+E L +
Sbjct: 14 NPKVINRIVD--KANLQESDTVLEIGPGKGALTTELAKRA---KQVVAIEIDPRLAKRLQ 68
Query: 254 KSMHTYYPNLMEGGRVQFVDGDGRE 278
+ L V+ V D +
Sbjct: 69 E-------KLALHPNVEVVHQDFLK 86
Score = 36.5 bits (85), Expect = 0.019
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 10/71 (14%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 112
L E VL+IG G G T LA + +V+ IE P+L +R
Sbjct: 26 NLQESDTVLEIGPGKGALTTELA---KRAKQVVAIEIDPRLAKRLQEK-------LALHP 75
Query: 113 RIKFVLGDGRK 123
++ V D K
Sbjct: 76 NVEVVHQDFLK 86
Score = 33.4 bits (77), Expect = 0.19
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 381 VHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVA 434
V + ++ K L+ VL+IG G G LT +A +V A+E L
Sbjct: 17 VINRIVD--KANLQESDTVLEIGPGKGALTTELAKRA---KQVVAIEIDPRLAK 65
>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation,
ribosomal structure and biogenesis].
Length = 300
Score = 39.2 bits (92), Expect = 0.003
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 13/91 (14%)
Query: 202 LEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDL---VAQANKSMHT 258
LE L+ LK G VLD+G GSG L A A +G KV V+ I+ A+ N ++
Sbjct: 153 LEALEKLLKKGKTVLDVGCGSGIL-AIAAAKLGA-KKVVGVD-IDPQAVEAARENARLN- 208
Query: 259 YYPNLMEGGRVQFVDGDGREGHAAEGPYDVI 289
+ + + GP+DVI
Sbjct: 209 ---GVELLVQAKGFLLLEV---PENGPFDVI 233
Score = 38.4 bits (90), Expect = 0.005
Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 386 LEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAV 426
LE L+ LK G VLD+G GSG L A A +G KV V
Sbjct: 153 LEALEKLLKKGKTVLDVGCGSGIL-AIAAAKLGA-KKVVGV 191
Score = 31.1 bits (71), Expect = 1.3
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 11/93 (11%)
Query: 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG--KVIGIEHIPQLVQRATHNV 101
++ L+ L + L +GK VLD+G G+G +LA K G KV+G++ PQ V+ A N
Sbjct: 150 SLCLEALEKLLKKGKTVLDVGCGSG----ILAIAAAKLGAKKVVGVDIDPQAVEAAREN- 204
Query: 102 ISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 134
N V+ ++ + + P+D+I
Sbjct: 205 ARLN--GVEL-LVQAKGFLLLEV-PENGPFDVI 233
>gnl|CDD|234970 PRK01683, PRK01683, trans-aconitate 2-methyltransferase;
Provisional.
Length = 258
Score = 38.8 bits (91), Expect = 0.004
Identities = 40/183 (21%), Positives = 73/183 (39%), Gaps = 40/183 (21%)
Query: 214 KVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVD 273
V+D+G G G T + P ++ ++ ++A+A + P+ QFV+
Sbjct: 34 YVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL----PD------CQFVE 82
Query: 274 GDGREGHAAEGPYDVIY-------VGGAVHHYPFKLMDQLKPGGVMWFTIGNAEEMLKNN 326
D + D+I+ + + +P +L+ L PGGV+ A +M +N
Sbjct: 83 ADIASWQPPQAL-DLIFANASLQWLPDHLELFP-RLVSLLAPGGVL------AVQM-PDN 133
Query: 327 RRTESNLAVVK-AHKKDHGEWEEEFMGRLWRLPALASVEEQKYWYHPNGFYDDLDVHAQA 385
S++ + + A G WE+ R R L P+ +YD L A
Sbjct: 134 LDEPSHVLMREVAEN---GPWEQNLPDRGARRAPLPP---------PHAYYDALAPAACR 181
Query: 386 LEI 388
++I
Sbjct: 182 VDI 184
>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed.
Length = 250
Score = 38.6 bits (91), Expect = 0.004
Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 202 LEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAV 242
LE L+ + PG VLD+G GSG L A A +G KV AV
Sbjct: 110 LEALEKLVLPGKTVLDVGCGSGIL-AIAAAKLGAK-KVLAV 148
Score = 38.6 bits (91), Expect = 0.004
Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 386 LEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAV 426
LE L+ + PG VLD+G GSG L A A +G KV AV
Sbjct: 110 LEALEKLVLPGKTVLDVGCGSGIL-AIAAAKLGAK-KVLAV 148
>gnl|CDD|233115 TIGR00755, ksgA, dimethyladenosine transferase. In both E. coli
and Saccharomyces cerevisiae, this protein is
responsible for the dimethylation of two adjacent
adenosine residues in a conserved hairpin of 16S rRNA in
bacteria, 18S rRNA in eukaryotes. This adjacent
dimethylation is the only rRNA modification shared by
bacteria and eukaryotes. A single member of this family
is present in each of the first 20 completed microbial
genomes. This protein is essential in yeast, but not in
E. coli, where its deletion leads to resistance to the
antibiotic kasugamycin. Alternate name:
S-adenosylmethionine--6-N',N'-adenosyl (rRNA)
dimethyltransferase [Protein synthesis, tRNA and rRNA
base modification].
Length = 253
Score = 38.0 bits (89), Expect = 0.006
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 19/106 (17%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 112
+ EG VL+IG G G T L + KV IE +L +R +
Sbjct: 26 NVLEGDVVLEIGPGLGALTEPLL---KRAKKVTAIEIDRRLAERLRKLLS-------LYE 75
Query: 113 RIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEGVRFGHIASPKVE 158
++ + GD K L+E P + V ++P +I+SP +
Sbjct: 76 NLEIIEGDALKVDLNEFPKQLKVVS----NLPY-----NISSPLIF 112
>gnl|CDD|237291 PRK13168, rumA, 23S rRNA m(5)U1939 methyltransferase; Reviewed.
Length = 443
Score = 38.6 bits (91), Expect = 0.006
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 43 QAMV---LDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATH 99
Q MV L+ L + G +VLD+ G G FT LA + V+G+E + +V+RA
Sbjct: 283 QKMVARALEWL--DPQPGDRVLDLFCGLGNFTLPLARQAAE---VVGVEGVEAMVERARE 337
Query: 100 N 100
N
Sbjct: 338 N 338
>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related
methyltransferases [Cell envelope biogenesis, outer
membrane].
Length = 283
Score = 38.0 bits (89), Expect = 0.008
Identities = 35/119 (29%), Positives = 46/119 (38%), Gaps = 31/119 (26%)
Query: 209 LKPGAKVLDIGSGSGYLTACMA-----HMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNL 263
LKPG +LDIG G G L A +VG T + + E +A
Sbjct: 70 LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE-------- 121
Query: 264 MEGGRVQFVDGDGREGHAAEGPYDVI-------YVGGAVHHYP--FKLMDQ-LKPGGVM 312
V+ D R+ E P+D I +VG +Y FK + LKPGG M
Sbjct: 122 ---DNVEVRLQDYRD---FEEPFDRIVSVGMFEHVG--KENYDDFFKKVYALLKPGGRM 172
Score = 29.5 bits (67), Expect = 3.2
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 393 LKPGAKVLDIGSGSGYLTACMA 414
LKPG +LDIG G G L A
Sbjct: 70 LKPGMTLLDIGCGWGGLAIYAA 91
Score = 29.1 bits (66), Expect = 5.0
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 54 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGI 87
L G +LDIG G G A G V+G+
Sbjct: 70 LKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGV 101
>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase.
MenG is a generic term for a methyltransferase that
catalyzes the last step in menaquinone biosynthesis; the
exact enzymatic activity differs for different MenG
because the menaquinone differ in their prenoid side
chains in different species. Members of this MenG
protein family are 2-heptaprenyl-1,4-naphthoquinone
methyltransferase, and are found together in operons
with the two subunits of the heptaprenyl diphosphate
synthase in Bacillus subtilis and related species
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 231
Score = 37.5 bits (87), Expect = 0.009
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 56 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR-- 113
G LD+ G ++ LA VG G VIG++ + N++S + VKD
Sbjct: 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDF--------SENMLSVGRQKVKDAGLH 96
Query: 114 -IKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 145
++ V G+ + D+ +D + +G + ++P+
Sbjct: 97 NVELVHGNAMELPFDDNSFDYVTIGFGLRNVPD 129
Score = 33.2 bits (76), Expect = 0.21
Identities = 23/108 (21%), Positives = 48/108 (44%), Gaps = 11/108 (10%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGR 268
++ G LD+ G+ + +A VGP G V ++ E++++ + +
Sbjct: 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKD-----AGLHN 97
Query: 269 VQFVDGDGREGHAAEGPYDVIYVGGAVHHYP-----FKLMDQ-LKPGG 310
V+ V G+ E + +D + +G + + P + M + +KPGG
Sbjct: 98 VELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGG 145
Score = 31.7 bits (72), Expect = 0.57
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVA 434
++ G LD+ G+ + +A VGP G V ++ E++++
Sbjct: 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLS 84
>gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA
(uracil-5-)-methyltransferase [Translation, ribosomal
structure and biogenesis].
Length = 432
Score = 37.7 bits (88), Expect = 0.012
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 46 VLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN 100
L+ L EL G++VLD+ G G F LA + KV G+E P+ V+ A N
Sbjct: 285 ALEWL--ELAGGERVLDLYCGVGTFGLPLA---KRVKKVHGVEISPEAVEAAQEN 334
Score = 31.9 bits (73), Expect = 0.71
Identities = 27/120 (22%), Positives = 41/120 (34%), Gaps = 19/120 (15%)
Query: 353 RLWRLPALASVEEQKYW-YHPNGFYDDLDVHAQALEILKDY------LKPGAKVLDIGSG 405
L L S+ E + P F+ V+ E L + L G +VLD+ G
Sbjct: 247 EEITLYGLESIREGVSFQISPRSFFQ---VNPAVAEKLYETALEWLELAGGERVLDLYCG 303
Query: 406 SGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFTEM-AEKVMQ 464
G +A KV+ VE + V A ++ V+F AE+
Sbjct: 304 VGTFGLPLA---KRVKKVHGVEISPEAVEAAQENA-----AANGIDNVEFIAGDAEEFTP 355
Score = 28.8 bits (65), Expect = 8.0
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 195 PKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 254
K++ ALE L+ L G +VLD+ G G +A KV+ VE + V A +
Sbjct: 279 EKLYETALEWLE--LAGGERVLDLYCGVGTFGLPLA---KRVKKVHGVEISPEAVEAAQE 333
Query: 255 S 255
+
Sbjct: 334 N 334
>gnl|CDD|233415 TIGR01444, fkbM_fam, methyltransferase, FkbM family. Members of
this family are characterized by two well-conserved
short regions separated by a variable in both sequence
and length. The first of the two regions is found in a
large number of proteins outside this subfamily, a
number of which have been characterized as
methyltransferases. One member of the present family,
FkbM, was shown to be required for a specific
methylation in the biosynthesis of the immunosuppressant
FK506 in Streptomyces strain MA6548.
Length = 144
Score = 35.8 bits (83), Expect = 0.013
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Query: 60 VLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNV-ISGNPEFV--------K 110
V+D+G+ G F+ A + G+VI E +P + NV ++ P V +
Sbjct: 2 VIDVGANIGDFSLYFARKGAE-GRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR 60
Query: 111 DGRIKF 116
DG ++F
Sbjct: 61 DGELEF 66
Score = 32.7 bits (75), Expect = 0.19
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 215 VLDIGSGSGYLTACMAHMVGPTGKVYAVE 243
V+D+G+ G + A G+V A E
Sbjct: 2 VIDVGANIGDFSLYFARKGAE-GRVIAFE 29
Score = 32.7 bits (75), Expect = 0.19
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 399 VLDIGSGSGYLTACMAHMVGPTGKVYAVE 427
V+D+G+ G + A G+V A E
Sbjct: 2 VIDVGANIGDFSLYFARKGAE-GRVIAFE 29
>gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal
structure and biogenesis].
Length = 300
Score = 36.9 bits (86), Expect = 0.020
Identities = 48/223 (21%), Positives = 74/223 (33%), Gaps = 31/223 (13%)
Query: 257 HTYYPNLMEGGRVQFVDGDGREGHAAEGPYD--VIYVGGAVHHYPFKLMD---QLKPGGV 311
PN + V F+ +D ++Y F+L +L PGG
Sbjct: 13 QNLRPNQLALPAVGFLVAPADAP----DDFDAVLLYWPKHKAEAEFQLAQLLARLPPGGE 68
Query: 312 MWFTIGNAEEMLKNNRRTESNLA-VVKAHKKDHGEWEEEFMGRLWRLPALASVEEQKYWY 370
+ +G + +++ + K H P A E K +
Sbjct: 69 I-VVVGEKRDGVRSAEKMLEKYGGPTKTDSARHCM---RLHYYSENPPPFADEPEWKVYL 124
Query: 371 ---------HPNGF-YDDLDVHAQAL-EILKDYLKPGAKVLDIGSGSGYLTACMAHMVGP 419
P F D LD ++ L E L G KVLD+G G G L +A P
Sbjct: 125 LGHELTFKTLPGVFSRDKLDKGSRLLLETLP--PDLGGKVLDLGCGYGVLGLVLAK-KSP 181
Query: 420 TGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFTEMAEKV 462
K+ V+ V A K++ N +E V + + E V
Sbjct: 182 QAKLTLVDVNARAVESARKNLAA---NGVENTEVWASNLYEPV 221
Score = 34.6 bits (80), Expect = 0.095
Identities = 33/119 (27%), Positives = 46/119 (38%), Gaps = 19/119 (15%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGR 268
G KVLD+G G G L +A P K+ V+ V A K++ N +E
Sbjct: 156 PDLGGKVLDLGCGYGVLGLVLAK-KSPQAKLTLVDVNARAVESARKNLAA---NGVENTE 211
Query: 269 VQFVDGDGREGHAAEGPYDVIY------VGGAVHHYPFKLM-----DQLKPGGVMWFTI 316
V + EG +D+I G AV H + + LKPGG +W
Sbjct: 212 VWASNL----YEPVEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVA 266
>gnl|CDD|222313 pfam13679, Methyltransf_32, Methyltransferase domain. This
family appears to be a methyltransferase domain.
Length = 143
Score = 34.9 bits (81), Expect = 0.029
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 40 KFQQ----AMVLDDLSEELTEGKK---VLDIGSGNGYFT---ALLAWCVGKTGKVIGIEH 89
K Q A ++ L +E+ + V+D G+G GY L + +V+GI+
Sbjct: 2 KLHQVERLAEFVEPLIKEVLDKTGCITVVDHGAGKGYLGFILYYLLFKRKYGVRVVGIDA 61
Query: 90 IPQLVQRA 97
+LV++A
Sbjct: 62 RAELVEKA 69
Score = 30.6 bits (70), Expect = 0.82
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 204 ILKDYLK--PGAKVLDIGSGSGYLTACMA---HMVGPTGKVYAVEHIEDLVAQANK 254
++K+ L V+D G+G GYL + +V ++ +LV +AN
Sbjct: 16 LIKEVLDKTGCITVVDHGAGKGYLGFILYYLLFKRKYGVRVVGIDARAELVEKANA 71
Score = 30.6 bits (70), Expect = 0.82
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 388 ILKDYLK--PGAKVLDIGSGSGYLTACMA---HMVGPTGKVYAVEHIEDLVAQANK 438
++K+ L V+D G+G GYL + +V ++ +LV +AN
Sbjct: 16 LIKEVLDKTGCITVVDHGAGKGYLGFILYYLLFKRKYGVRVVGIDARAELVEKANA 71
>gnl|CDD|184509 PRK14103, PRK14103, trans-aconitate 2-methyltransferase;
Provisional.
Length = 255
Score = 35.8 bits (83), Expect = 0.035
Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 21/116 (18%)
Query: 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRV 269
+ +V+D+G G G LT +A P + A++ ++VA A V
Sbjct: 28 ERARRVVDLGCGPGNLTRYLARR-WPGAVIEALDSSPEMVAAA------------RERGV 74
Query: 270 QFVDGDGREGHAAEGPYDVIYVGGAVHHYP------FKLMDQLKPGGVMWFTI-GN 318
GD R+ DV+ A+ P + +D+L PG + + GN
Sbjct: 75 DARTGDVRDWKPKP-DTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGN 129
>gnl|CDD|223370 COG0293, FtsJ, 23S rRNA methylase [Translation, ribosomal
structure and biogenesis].
Length = 205
Score = 34.9 bits (81), Expect = 0.056
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 54 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIE 88
G V+D+G+ G ++ + A +G GK++ ++
Sbjct: 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVD 77
Score = 29.5 bits (67), Expect = 2.6
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 202 LEILKDY--LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 243
LE+ + + KPG V+D+G+ G + A +G GK+ AV+
Sbjct: 34 LELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVD 77
Score = 29.5 bits (67), Expect = 2.6
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 386 LEILKDY--LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 427
LE+ + + KPG V+D+G+ G + A +G GK+ AV+
Sbjct: 34 LELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVD 77
>gnl|CDD|225319 COG2521, COG2521, Predicted archaeal methyltransferase [General
function prediction only].
Length = 287
Score = 35.1 bits (81), Expect = 0.071
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 56 EGKKVLDIGSGNGYFTALLAWCVGKTG--KVIGIEHIPQLVQRATHNVISGNPEFVKDGR 113
G++VLD +G GY A + G VI +E P +++ A N S +
Sbjct: 134 RGERVLDTCTGLGYT----AIEALERGAIHVITVEKDPNVLELAKLNPWSRELF---EIA 186
Query: 114 IKFVLGDGR---KGYLDEAPYDIIH 135
IK +LGD K + DE+ IIH
Sbjct: 187 IKIILGDAYEVVKDFDDESFDAIIH 211
>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 34.5 bits (80), Expect = 0.075
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 254
+KPG KVLD+ G+G + +A VG G+V ++ E ++ A +
Sbjct: 49 IKPGDKVLDVACGTGDMALLLAKSVGT-GEVVGLDISESMLEVARE 93
Score = 34.5 bits (80), Expect = 0.075
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
+KPG KVLD+ G+G + +A VG G+V ++ E ++ A +
Sbjct: 49 IKPGDKVLDVACGTGDMALLLAKSVGT-GEVVGLDISESMLEVARE 93
Score = 33.8 bits (78), Expect = 0.15
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 56 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIK 115
G KVLD+ G G LLA VG TG+V+G++ +++ A + + ++
Sbjct: 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-----VE 104
Query: 116 FVLGDGRKGYLDEAPYDIIHVGGSIE---DIPEGVR 148
FV+GD + +D + + + DI + ++
Sbjct: 105 FVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALK 140
>gnl|CDD|237898 PRK15068, PRK15068, tRNA mo(5)U34 methyltransferase; Provisional.
Length = 322
Score = 34.8 bits (81), Expect = 0.084
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 56 EGKKVLDIGSGNGYF 70
+G+ VLD+G GNGY
Sbjct: 122 KGRTVLDVGCGNGYH 136
Score = 30.2 bits (69), Expect = 2.6
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 8/32 (25%)
Query: 203 EILKDYLKP--GAKVLDIGSGSGYLTACMAHM 232
+ + +L P G VLD+G G+GY HM
Sbjct: 112 DRVLPHLSPLKGRTVLDVGCGNGY------HM 137
Score = 30.2 bits (69), Expect = 2.6
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 8/32 (25%)
Query: 387 EILKDYLKP--GAKVLDIGSGSGYLTACMAHM 416
+ + +L P G VLD+G G+GY HM
Sbjct: 112 DRVLPHLSPLKGRTVLDVGCGNGY------HM 137
>gnl|CDD|233713 TIGR02081, metW, methionine biosynthesis protein MetW. This
protein is found alongside MetX, of the enzyme that
acylates homoserine as a first step toward methionine
biosynthesis, in many species. It appears to act in
methionine biosynthesis but is not fully characterized
[Amino acid biosynthesis, Aspartate family].
Length = 194
Score = 33.1 bits (76), Expect = 0.19
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 18/109 (16%)
Query: 202 LEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYP 261
LE + + + PG++VLD+G G G L A + G Y +E +D V
Sbjct: 4 LESILNLIPPGSRVLDLGCGDGELLALLRDEKQVRG--YGIEIDQDGVLAC--------- 52
Query: 262 NLMEGGRVQFVDGDGREG--HAAEGPYDVIYVGGAVH--HYPFKLMDQL 306
+ G V + GD EG + +D + + + P +++D++
Sbjct: 53 -VARG--VNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNPEEILDEM 98
Score = 33.1 bits (76), Expect = 0.19
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 386 LEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIED-LVAQANKSMHTYY 444
LE + + + PG++VLD+G G G L A + G Y +E +D ++A + ++
Sbjct: 4 LESILNLIPPGSRVLDLGCGDGELLALLRDEKQVRG--YGIEIDQDGVLACVARGVNVIQ 61
Query: 445 PNLMEG 450
+L EG
Sbjct: 62 GDLDEG 67
>gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
This group contains members identified as related to
zinc-dependent alcohol dehydrogenase and other members
of the MDR family, including threonine dehydrogenase.
The medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group includes
various activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has a
catalytic role, while structural zinc aids in stability.
ADH-like proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and generally have 2 tightly bound zinc atoms per
subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 319
Score = 33.8 bits (78), Expect = 0.19
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 199 AQALEILKDY-LKPGAKVLDIGSGS-GYLTACMAHMVGPTGKVYAV 242
A ALEIL+ + PG KV +G G G L A + + GP V V
Sbjct: 142 AAALEILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGP--DVVLV 185
Score = 33.8 bits (78), Expect = 0.19
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 383 AQALEILKDY-LKPGAKVLDIGSGS-GYLTACMAHMVGPTGKVYAV 426
A ALEIL+ + PG KV +G G G L A + + GP V V
Sbjct: 142 AAALEILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGP--DVVLV 185
>gnl|CDD|219269 pfam07021, MetW, Methionine biosynthesis protein MetW. This family
consists of several bacterial and one archaeal
methionine biosynthesis MetW proteins. Biosynthesis of
methionine from homoserine in Pseudomonas putida takes
place in three steps. The first step is the acylation of
homoserine to yield an acyl-L-homoserine. This reaction
is catalyzed by the products of the metXW genes and is
equivalent to the first step in enterobacteria,
gram-positive bacteria and fungi, except that in these
microorganisms the reaction is catalyzed by a single
polypeptide (the product of the metA gene in Escherichia
coli and the met5 gene product in Neurospora crassa). In
Pseudomonas putida, as in gram-positive bacteria and
certain fungi, the second and third steps are a direct
sulfhydrylation that converts the O-acyl-L-homoserine
into homocysteine and further methylation to yield
methionine. The latter reaction can be mediated by
either of the two methionine synthetases present in the
cells.
Length = 193
Score = 33.2 bits (76), Expect = 0.20
Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 14/107 (13%)
Query: 202 LEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYP 261
+ + PG++VLD+G G G L + G +E VA+
Sbjct: 4 FRYIARLIPPGSRVLDLGCGDGSLLYLLQEEKQVDG--RGIELDAAGVAEC--------- 52
Query: 262 NLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVH--HYPFKLMDQL 306
+ +G V D D H + +D + + + P +++D+L
Sbjct: 53 -VAKGLSVIQGDADKGLEHFPDKSFDYVILSQTLQATRNPREVLDEL 98
Score = 32.8 bits (75), Expect = 0.23
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 386 LEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQA 436
+ + PG++VLD+G G G L + G +E VA+
Sbjct: 4 FRYIARLIPPGSRVLDLGCGDGSLLYLLQEEKQVDG--RGIELDAAGVAEC 52
Score = 28.5 bits (64), Expect = 6.4
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 57 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIE----HIPQLVQRATHNVISGNPE 107
G +VLD+G G+G LL G+ GIE + + V + VI G+ +
Sbjct: 14 GSRVLDLGCGDGSLLYLLQEEKQVDGR--GIELDAAGVAECVAKGLS-VIQGDAD 65
>gnl|CDD|216666 pfam01728, FtsJ, FtsJ-like methyltransferase. This family consists
of FtsJ from various bacterial and archaeal sources FtsJ
is a methyltransferase, but actually has no effect on
cell division. FtsJ's substrate is the 23S rRNA. The 1.5
A crystal structure of FtsJ in complex with its cofactor
S-adenosylmethionine revealed that FtsJ has a
methyltransferase fold. This family also includes the N
terminus of flaviviral NS5 protein. It has been
hypothesised that the N-terminal domain of NS5 is a
methyltransferase involved in viral RNA capping.
Length = 177
Score = 32.6 bits (75), Expect = 0.26
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 13/75 (17%)
Query: 57 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIE----HIPQLVQRATHNVISGNPEFVKD- 111
GK VLD+G+ G F+ +L G GKV+ ++ Q V ++ +PE ++
Sbjct: 23 GKTVLDLGAAPGGFSQVLLERGGA-GKVVAVDLGPMEPIQGVYFLRGDIT--DPETLEKL 79
Query: 112 -----GRIKFVLGDG 121
G++ VL DG
Sbjct: 80 RELLPGKVDLVLSDG 94
Score = 32.2 bits (74), Expect = 0.30
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 202 LEILKDY---LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAV 242
LEI + + G VLD+G+ G + + G GKV AV
Sbjct: 10 LEIDERFGLKPGKGKTVLDLGAAPGGFSQVLLER-GGAGKVVAV 52
Score = 32.2 bits (74), Expect = 0.30
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 386 LEILKDY---LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAV 426
LEI + + G VLD+G+ G + + G GKV AV
Sbjct: 10 LEIDERFGLKPGKGKTVLDLGAAPGGFSQVLLER-GGAGKVVAV 52
>gnl|CDD|129571 TIGR00479, rumA, 23S rRNA (uracil-5-)-methyltransferase RumA. This
protein family was first proposed to be RNA
methyltransferases by homology to the TrmA family. The
member from E. coli has now been shown to act as the 23S
RNA methyltransferase for the conserved U1939. The gene
is now designated rumA and was previously designated
ygcA [Protein synthesis, tRNA and rRNA base
modification].
Length = 431
Score = 33.3 bits (76), Expect = 0.26
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 32 FQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIP 91
FQ N+ ++ L+ L EL + V+D G G FT LA + V+GIE +P
Sbjct: 270 FQVNSGQNEKLVDRALEAL--ELQGEELVVDAYCGVGTFTLPLA---KQAKSVVGIEVVP 324
Query: 92 QLVQRATHN 100
+ V++A N
Sbjct: 325 ESVEKAQQN 333
>gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase.
Ribosomal protein L11 methyltransferase is an
S-adenosyl-L-methionine-dependent methyltransferase
required for the modification of ribosomal protein L11.
This protein is found in bacteria and (with a probable
transit peptide) in Arabidopsis [Protein synthesis,
Ribosomal proteins: synthesis and modification].
Length = 288
Score = 32.9 bits (75), Expect = 0.36
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG--KVIGIEHIPQLVQRATHN 100
++ L+ L + + K V+D+G G+G +L+ K G KV+GI+ P V+ A N
Sbjct: 147 SLCLEWLEDLDLKDKNVIDVGCGSG----ILSIAALKLGAAKVVGIDIDPLAVESARKN 201
Score = 29.8 bits (67), Expect = 3.2
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 202 LEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 243
LE L+D V+D+G GSG L + A +G KV ++
Sbjct: 150 LEWLEDLDLKDKNVIDVGCGSGIL-SIAALKLG-AAKVVGID 189
Score = 29.8 bits (67), Expect = 3.2
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 386 LEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 427
LE L+D V+D+G GSG L + A +G KV ++
Sbjct: 150 LEWLEDLDLKDKNVIDVGCGSGIL-SIAALKLG-AAKVVGID 189
>gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase.
Length = 261
Score = 32.6 bits (74), Expect = 0.36
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKV----YAVEHIEDLVAQANKSMHTYYPNLME 265
K G +VLD+ GSG L ++ VG GKV ++ E + ++ + Y N
Sbjct: 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKN--- 128
Query: 266 GGRVQFVDGDGREGHAAEGPYDVIYVG 292
+++++GD + + +D I +G
Sbjct: 129 ---IEWIEGDATDLPFDDCYFDAITMG 152
Score = 31.0 bits (70), Expect = 1.2
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 57 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKD--GRI 114
G +VLD+ G+G LL+ VG GKV+G++ + + A S K I
Sbjct: 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAA----SRQELKAKSCYKNI 129
Query: 115 KFVLGDGRKGYLDEAPYDIIHVG 137
+++ GD D+ +D I +G
Sbjct: 130 EWIEGDATDLPFDDCYFDAITMG 152
Score = 30.2 bits (68), Expect = 2.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 394 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 427
K G +VLD+ GSG L ++ VG GKV ++
Sbjct: 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLD 105
>gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase.
Length = 475
Score = 32.8 bits (75), Expect = 0.37
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 17/68 (25%)
Query: 43 QAMVLDDLSEELT--------------EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIE 88
+AM+LD + +L EGK VL++G+G G FT LA K G+VI ++
Sbjct: 10 EAMMLDSKASDLDKEERPEILSLLPPYEGKSVLELGAGIGRFTGELA---KKAGQVIALD 66
Query: 89 HIPQLVQR 96
I ++++
Sbjct: 67 FIESVIKK 74
Score = 29.3 bits (66), Expect = 5.7
Identities = 33/112 (29%), Positives = 44/112 (39%), Gaps = 22/112 (19%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEG-G 267
LKPG KVLD+G G G G Y E+ + V + S++ L G
Sbjct: 264 LKPGQKVLDVGCGIG------------GGDFYMAENFDVHVVGIDLSVNMISFALERAIG 311
Query: 268 R---VQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFK------LMDQLKPGG 310
R V+F D + + +DVIY + H K LKPGG
Sbjct: 312 RKCSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGG 363
Score = 28.6 bits (64), Expect = 7.8
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 393 LKPGAKVLDIGSGSG 407
LKPG KVLD+G G G
Sbjct: 264 LKPGQKVLDVGCGIG 278
>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function
prediction only].
Length = 248
Score = 32.6 bits (75), Expect = 0.40
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 11/67 (16%)
Query: 57 GKKVLDIGSGNGYFTALLAWCVGKTGK--VIGIEHIPQLVQRATHNV-ISGNPEFVKDGR 113
++LD+G+GNG LLA +T K ++G+E + + A NV ++ E R
Sbjct: 45 KGRILDLGAGNGALGLLLA---QRTEKAKIVGVEIQEEAAEMAQRNVALNPLEE-----R 96
Query: 114 IKFVLGD 120
I+ + D
Sbjct: 97 IQVIEAD 103
Score = 30.7 bits (70), Expect = 1.5
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 208 YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGG 267
+ ++LD+G+G+G L + K+ VE E+ A +++ L E
Sbjct: 41 PVPKKGRILDLGAGNGAL-GLLLAQRTEKAKIVGVEIQEEAAEMAQRNVA--LNPLEE-- 95
Query: 268 RVQFVDGD 275
R+Q ++ D
Sbjct: 96 RIQVIEAD 103
Score = 29.5 bits (67), Expect = 3.6
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 392 YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGG 451
+ ++LD+G+G+G L + K+ VE E+ A +++ L E
Sbjct: 41 PVPKKGRILDLGAGNGAL-GLLLAQRTEKAKIVGVEIQEEAAEMAQRNVA--LNPLEE-- 95
Query: 452 RVQFTEM 458
R+Q E
Sbjct: 96 RIQVIEA 102
>gnl|CDD|128898 smart00650, rADc, Ribosomal RNA adenine dimethylases.
Length = 169
Score = 31.7 bits (73), Expect = 0.41
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVA 250
L+PG VL+IG G G LT + +V A+E L
Sbjct: 11 LRPGDTVLEIGPGKGALTEELLERA---KRVTAIEIDPRLAP 49
Score = 31.7 bits (73), Expect = 0.41
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVA 434
L+PG VL+IG G G LT + +V A+E L
Sbjct: 11 LRPGDTVLEIGPGKGALTEELLERA---KRVTAIEIDPRLAP 49
Score = 31.3 bits (72), Expect = 0.59
Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 20/116 (17%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 112
L G VL+IG G G T L + +V IE P+L R +F
Sbjct: 10 NLRPGDTVLEIGPGKGALTEELL---ERAKRVTAIEIDPRLAPRLRE-------KFAAAD 59
Query: 113 RIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEGVRFGHIASPKVESVMRSIDRRR 168
+ + GD K L + + VG ++P + +I++P + ++ R
Sbjct: 60 NLTVIHGDALKFDLPKLQPYKV-VG----NLP----Y-NISTPILFKLLEEPPAFR 105
>gnl|CDD|218506 pfam05219, DREV, DREV methyltransferase. This family contains DREV
protein homologues from several eukaryotes. The function
of this protein is unknown. However, these proteins
appear to be related to other methyltransferases
(Bateman A pers obs).
Length = 265
Score = 32.6 bits (74), Expect = 0.44
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 181 DIPQSLGFGSV-MSSPKVHAQALEILKDYLKPGA---KVLDIGSGSGYLTACMAHMVGPT 236
DI LG GS+ + S + + L I G +LD+G+G G +T MA
Sbjct: 60 DINGFLGRGSMFIFSEEQFRKLLVIGGFQPASGQEPVTLLDLGAGDGEITLRMAPTF--- 116
Query: 237 GKVYAVEHIEDLVAQANK 254
+VYA E + + K
Sbjct: 117 EEVYATELSWTMRDRLKK 134
>gnl|CDD|181354 PRK08287, PRK08287, cobalt-precorrin-6Y C(15)-methyltransferase;
Validated.
Length = 187
Score = 31.9 bits (73), Expect = 0.52
Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 34/148 (22%)
Query: 192 MSSPKVHAQALEILKDYLKPGAKVLDIGSGSGY--LTACMAHMVGPTGKVYAVEHIEDLV 249
M+ +V A AL L+ L ++D+G+G+G + A + P+ +V A+E D +
Sbjct: 14 MTKEEVRALALSKLE--LHRAKHLIDVGAGTGSVSIEAALQF---PSLQVTAIERNPDAL 68
Query: 250 AQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGP------YDVIYVGGAVHHYPFKLM 303
L++ R +F + E P D I++GG+ + ++
Sbjct: 69 R------------LIKENRQRF-GCGNIDIIPGEAPIELPGKADAIFIGGSGGNLT-AII 114
Query: 304 D----QLKPGG--VMWFTI-GNAEEMLK 324
D L PGG V+ F + N L
Sbjct: 115 DWSLAHLHPGGRLVLTFILLENLHSALA 142
Score = 28.4 bits (64), Expect = 6.7
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 22/102 (21%)
Query: 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS 103
A+ L L EL K ++D+G+G G ++ A + +V IE P +
Sbjct: 21 ALALSKL--ELHRAKHLIDVGAGTGS-VSIEAALQFPSLQVTAIERNPDAL--------- 68
Query: 104 GNPEFVKDGRIKFVLGDGR--KGY----LDEAPYDIIHVGGS 139
+K+ R +F G+ G L D I +GGS
Sbjct: 69 ---RLIKENRQRFGCGNIDIIPGEAPIELPG-KADAIFIGGS 106
>gnl|CDD|215208 PLN02366, PLN02366, spermidine synthase.
Length = 308
Score = 32.3 bits (74), Expect = 0.54
Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 25/107 (23%)
Query: 245 IEDLVAQANKSMHTYYPNL---MEGGRVQFVDGDGRE--GHAAEGPYDVIYV------GG 293
I+ +V +K ++P+L + RV GDG E +A EG YD I V G
Sbjct: 123 IDKMVIDVSKK---FFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVGP 179
Query: 294 AVHHY--PF--KLMDQLKPGGV-------MWFTIGNAEEMLKNNRRT 329
A + PF + L+PGGV MW + E+++ R T
Sbjct: 180 AQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRET 226
>gnl|CDD|238242 cd00423, Pterin_binding, Pterin binding enzymes. This family
includes dihydropteroate synthase (DHPS) and
cobalamin-dependent methyltransferases such as
methyltetrahydrofolate, corrinoid iron-sulfur protein
methyltransferase (MeTr) and methionine synthase (MetH).
DHPS, a functional homodimer, catalyzes the
condensation of p-aminobenzoic acid (pABA) in the de
novo biosynthesis of folate, which is an essential
cofactor in both nucleic acid and protein biosynthesis.
Prokaryotes (and some lower eukaryotes) must synthesize
folate de novo, while higher eukaryotes are able to
utilize dietary folate and therefore lack DHPS.
Sulfonamide drugs, which are substrate analogs of pABA,
target DHPS. Cobalamin-dependent methyltransferases
catalyze the transfer of a methyl group via a methyl-
cob(III)amide intermediate. These include MeTr, a
functional heterodimer, and the folate binding domain of
MetH.
Length = 258
Score = 31.1 bits (71), Expect = 1.0
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 374 GFYDDLDVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLV 433
G + LD +ALE + ++ GA ++DIG S T A V ++ V + +
Sbjct: 18 GKFLSLD---KALEHARRMVEEGADIIDIGGES---TRPGAEPVSVEEELERVIPVLRAL 71
Query: 434 AQANK---SMHTYYPNLME 449
A S+ T+ + E
Sbjct: 72 AGEPDVPISVDTFNAEVAE 90
Score = 29.9 bits (68), Expect = 2.9
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 201 ALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK---SMH 257
ALE + ++ GA ++DIG S T A V ++ V + +A S+
Sbjct: 26 ALEHARRMVEEGADIIDIGGES---TRPGAEPVSVEEELERVIPVLRALAGEPDVPISVD 82
Query: 258 TYYPNLME 265
T+ + E
Sbjct: 83 TFNAEVAE 90
>gnl|CDD|236988 PRK11805, PRK11805, N5-glutamine S-adenosyl-L-methionine-dependent
methyltransferase; Provisional.
Length = 307
Score = 31.3 bits (72), Expect = 1.2
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 23/93 (24%)
Query: 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDL------VAQANKSMHTYYPNL 263
P ++LD+ +GSG + A P +V AV D+ VA+ N H L
Sbjct: 132 PPVTRILDLCTGSGCI-AIACAYAFPDAEVDAV----DISPDALAVAEINIERH----GL 182
Query: 264 MEGGRVQFVDGDGREGHAAEGPYDVI-----YV 291
+ RV ++ D YD+I YV
Sbjct: 183 ED--RVTLIESDLFAA-LPGRRYDLIVSNPPYV 212
>gnl|CDD|234496 TIGR04198, paramyx_RNAcap, mRNA capping enzyme, paramyxovirus
family. This model represents a common C-terminal
region shared by paramyxovirus-like RNA-dependent RNA
polymerases (see model pfam00946). Polymerase proteins
described by these two models are often called L protein
(large polymerase protein). Capping of mRNA requires RNA
triphosphatase and guanylyl transferase activities,
demonstrated for the rinderpest virus L protein and at
least partially localized to the region of this model.
Length = 893
Score = 31.3 bits (71), Expect = 1.3
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 170 IERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKDYLKPGAK---VLDIGSGSGYLT 226
P + P P G SV + H +A IL K L +G GSG +
Sbjct: 484 EPVPESSIPRVPDPLHHGLRSVGVASSAHYKARSILSLLKKLKILYGDCLFLGEGSGGML 543
Query: 227 ACMAHMVGPTGKVY 240
+ + +V P+ K+Y
Sbjct: 544 SLLERLVPPS-KIY 556
>gnl|CDD|181902 PRK09489, rsmC, 16S ribosomal RNA m2G1207 methyltransferase;
Provisional.
Length = 342
Score = 31.1 bits (71), Expect = 1.4
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 377 DDLDVHAQAL-EILKDYLKPGAKVLDIGSGSGYLTACMA 414
D LDV +Q L L + K KVLD+G G+G L+A +A
Sbjct: 179 DGLDVGSQLLLSTLTPHTK--GKVLDVGCGAGVLSAVLA 215
>gnl|CDD|234247 TIGR03533, L3_gln_methyl, protein-(glutamine-N5) methyltransferase,
ribosomal protein L3-specific. Members of this protein
family methylate ribosomal protein L3 on a glutamine
side chain. This family is related to HemK, a
protein-glutamine methyltranferase for peptide chain
release factors [Protein synthesis, Ribosomal proteins:
synthesis and modification].
Length = 284
Score = 30.9 bits (71), Expect = 1.5
Identities = 36/142 (25%), Positives = 51/142 (35%), Gaps = 41/142 (28%)
Query: 215 VLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDL--VAQANKSMHTYYPNLMEGGRVQFV 272
+LD+ +GSG + A+ P +V AV+ D VA+ N H L + RV +
Sbjct: 125 ILDLCTGSGCIAIACAY-AFPEAEVDAVDISPDALAVAEINIERH----GLED--RVTLI 177
Query: 273 DGDGREGHAAEGPYDVI-----YVGGAV--------HHYP----------FKLM------ 303
D YD+I YV HH P L+
Sbjct: 178 QSDLFAALPGR-KYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAE 236
Query: 304 --DQLKPGGVMWFTIGNAEEML 323
D L GV+ +GN+ E L
Sbjct: 237 AADHLNENGVLVVEVGNSMEAL 258
>gnl|CDD|236841 PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional.
Length = 272
Score = 30.6 bits (70), Expect = 1.5
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 46 VLDDLSEELTEG-KKVLDIGSGNGYFTALLA 75
V + L+E L E +LDIG G GY+T LA
Sbjct: 74 VANLLAERLDEKATALLDIGCGEGYYTHALA 104
Score = 30.3 bits (69), Expect = 2.2
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 374 GFYDDLDVHAQA-LEILKDYLKPGAK-VLDIGSGSGYLTACMAH 415
G Y L A +L + L A +LDIG G GY T +A
Sbjct: 65 GHYQPL---RDAVANLLAERLDEKATALLDIGCGEGYYTHALAD 105
Score = 29.5 bits (67), Expect = 4.1
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Query: 198 HAQAL-----EILKDYLKPGAK-VLDIGSGSGYLTACMAH 231
H Q L +L + L A +LDIG G GY T +A
Sbjct: 66 HYQPLRDAVANLLAERLDEKATALLDIGCGEGYYTHALAD 105
>gnl|CDD|225318 COG2520, COG2520, Predicted methyltransferase [General function
prediction only].
Length = 341
Score = 30.8 bits (70), Expect = 1.6
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 191 VMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVA 250
V SP++ + + + K G VLD+ +G G + +A P KVYA++ D V
Sbjct: 169 VYFSPRLSTERARVAELV-KEGETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVE 225
Query: 251 QANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVG--GAVHHYPFKLMDQLKP 308
+++ N +E GRV+ + GD RE G D I +G + H + ++ LK
Sbjct: 226 YLKENIRL---NKVE-GRVEPILGDAREVAPELGVADRIIMGLPKSAHEFLPLALELLKD 281
Query: 309 GGVM 312
GG++
Sbjct: 282 GGII 285
>gnl|CDD|152928 pfam12494, DUF3695, Protein of unknown function (DUF3695). This
family of proteins is found in eukaryotes. Proteins in
this family are typically between 157 and 192 amino
acids in length. There is a single completely conserved
residue D that may be functionally important.
Length = 103
Score = 29.3 bits (66), Expect = 1.6
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Query: 338 AHKKDHGE-WEEEFMGRLWRLPALASVEEQKYWYHPNGFYDDLDVHAQAL 386
H H E WE RL+ L+S ++ P D LD ++
Sbjct: 8 THWAQHLEPWE-----RLFYHATLSSSRRSARYFDPQIPKDSLDFQLKSR 52
>gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase. This
model represents an O-methyltransferase believed to act
at two points in the ubiquinone biosynthetic pathway in
bacteria (UbiG) and fungi (COQ3). A separate methylase
(MenG/UbiE) catalyzes the single C-methylation step. The
most commonly used names for genes in this family do not
indicate whether this gene is an O-methyl, or C-methyl
transferase [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 224
Score = 30.3 bits (69), Expect = 1.8
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 29/118 (24%)
Query: 212 GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLV------AQANKSMHTYYPNLME 265
G +VLD+G G G L+ +A + V ++ E+ + A+ + + Y
Sbjct: 46 GLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLLKIEY----- 97
Query: 266 GGRVQFVDGDGREGHAAEGP--YDVIYVGGAVHHYPF------KLMDQLKPGGVMWFT 315
R V E A +G +DV+ + H P LKPGG+++F+
Sbjct: 98 --RCTSV-----EDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFS 148
Score = 30.0 bits (68), Expect = 2.6
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 56 EGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRAT 98
G +VLD+G G G LL+ + + G V GI+ + ++ A
Sbjct: 45 FGLRVLDVGCGGG----LLSEPLARLGANVTGIDASEENIEVAK 84
Score = 28.4 bits (64), Expect = 6.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 396 GAKVLDIGSGSGYLTACMAHM 416
G +VLD+G G G L+ +A +
Sbjct: 46 GLRVLDVGCGGGLLSEPLARL 66
>gnl|CDD|216988 pfam02353, CMAS, Mycolic acid cyclopropane synthetase. This family
consist of Cyclopropane-fatty-acyl-phospholipid synthase
or CFA synthase EC:2.1.1.79 this enzyme catalyze the
reaction: S-adenosyl-L-methionine + phospholipid
olefinic fatty acid <=> S-adenosyl-L-homocysteine +
phospholipid cyclopropane fatty acid.
Length = 273
Score = 30.4 bits (69), Expect = 2.0
Identities = 34/117 (29%), Positives = 46/117 (39%), Gaps = 27/117 (23%)
Query: 209 LKPGAKVLDIGSGSGYLTACMA-----HMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNL 263
LKPG +LDIG G G L A ++VG T +H VA
Sbjct: 60 LKPGMTLLDIGCGWGGLMRRAAERYDVNVVGLTLSKNQYKHARQRVA-----------AE 108
Query: 264 MEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHH-----YPF---KLMDQLKPGGVM 312
+V+ + D R+ + P+D I G H Y KL + L PGG+M
Sbjct: 109 GLQRKVEVLLQDYRD---FDEPFDRIVSVGMFEHVGHENYDTFFKKLYNLLPPGGLM 162
Score = 28.4 bits (64), Expect = 8.3
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 393 LKPGAKVLDIGSGSGYL 409
LKPG +LDIG G G L
Sbjct: 60 LKPGMTLLDIGCGWGGL 76
>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal
structure and biogenesis].
Length = 255
Score = 30.3 bits (69), Expect = 2.0
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 196 KVHAQALEILKDYLKPGAKVLDI 218
K+ A+AL+ + +KPG L++
Sbjct: 19 KIAAKALKEVASLVKPGVTTLEL 41
Score = 29.1 bits (66), Expect = 4.7
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 380 DVHAQALEILKDYLKPGAKVLDI 402
+ A+AL+ + +KPG L++
Sbjct: 19 KIAAKALKEVASLVKPGVTTLEL 41
>gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function
prediction only].
Length = 218
Score = 30.1 bits (68), Expect = 2.0
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG--KVIGIEHIPQLVQRATHNV 101
A +DD E GK+VLD+G+G+G L+A + G +V+ + P L Q N
Sbjct: 68 ARYIDD-HPETVRGKRVLDLGAGSG----LVAIAAARAGAAEVVAADIDPWLEQAIRLNA 122
>gnl|CDD|176209 cd08247, AST1_like, AST1 is a cytoplasmic protein associated with
the periplasmic membrane in yeast. This group contains
members identified in targeting of yeast membrane
proteins ATPase. AST1 is a cytoplasmic protein
associated with the periplasmic membrane in yeast,
identified as a multicopy suppressor of pma1 mutants
which cause temperature sensitive growth arrest due to
the inability of ATPase to target to the cell surface.
This family is homologous to the medium chain family of
dehydrogenases and reductases. Medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of an
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES.
Length = 352
Score = 30.3 bits (69), Expect = 2.1
Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 21/117 (17%)
Query: 46 VLDDLSEELTEGKKVLDIGSGN--GYFTALLAWCVGKTGKVIGI--EHIPQLVQRATHNV 101
+L+DL ++L KVL +G G F LA G V+G +L ++
Sbjct: 141 ILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTCSSRSAELNKK----- 195
Query: 102 ISGNPEFV--KDGRIKFVLGDGRKGYLDEAPYDII--HVGGSIEDIPEGVRFGHIAS 154
G F+ +L + + +D+I VGG D+ F HI S
Sbjct: 196 -LGADHFIDYDAHSGVKLLKPVLENVKGQGKFDLILDCVGGY--DL-----FPHINS 244
>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis
methyltransferases. This model represents a family of
methyltransferases involved in the biosynthesis of
menaquinone and ubiqinone. Some members such as the UbiE
enzyme from E. coli are believed to act in both
pathways, while others may act in only the menaquinone
pathway. These methyltransferases are members of the
UbiE/CoQ family of methyltransferases (pfam01209) which
also contains ubiquinone methyltransferases and other
methyltransferases. Members of this clade include a wide
distribution of bacteria and eukaryotes, but no archaea.
An outgroup for this clade is provided by the
phosphatidylethanolamine methyltransferase (EC 2.1.1.17)
from Rhodobacter sphaeroides. Note that a number of
non-orthologous genes which are members of pfam03737
have been erroneously annotated as MenG
methyltransferases [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 223
Score = 29.9 bits (68), Expect = 2.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKV 239
G KVLD+ G+G L +A GKV
Sbjct: 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKV 67
Score = 29.9 bits (68), Expect = 2.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 394 KPGAKVLDIGSGSGYLTACMAHMVGPTGKV 423
G KVLD+ G+G L +A GKV
Sbjct: 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKV 67
Score = 28.8 bits (65), Expect = 5.5
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Query: 57 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKF 116
G+KVLD+ G G LA GKV G++ ++++ A I+F
Sbjct: 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLN-------IEF 92
Query: 117 VLGDGRKGYLDEAPYDIIHVGGSI---EDIPEGVR 148
+ D ++ +D + + + DI + +R
Sbjct: 93 IQADAEALPFEDNSFDAVTIAFGLRNVTDIQKALR 127
>gnl|CDD|183282 PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase;
Provisional.
Length = 383
Score = 30.2 bits (69), Expect = 2.5
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 209 LKPGAKVLDIGSGSGYLTACMA 230
LKPG +VLDIG G G L A
Sbjct: 165 LKPGMRVLDIGCGWGGLARYAA 186
Score = 30.2 bits (69), Expect = 2.5
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 393 LKPGAKVLDIGSGSGYLTACMA 414
LKPG +VLDIG G G L A
Sbjct: 165 LKPGMRVLDIGCGWGGLARYAA 186
>gnl|CDD|180961 PRK07402, PRK07402, precorrin-6B methylase; Provisional.
Length = 196
Score = 29.6 bits (67), Expect = 3.1
Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLV 249
L+P + + DIG+G+G + A ++ P G+V A+E E++V
Sbjct: 38 LEPDSVLWDIGAGTGTI-PVEAGLLCPKGRVIAIERDEEVV 77
Score = 29.6 bits (67), Expect = 3.1
Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLV 433
L+P + + DIG+G+G + A ++ P G+V A+E E++V
Sbjct: 38 LEPDSVLWDIGAGTGTI-PVEAGLLCPKGRVIAIERDEEVV 77
>gnl|CDD|178131 PLN02516, PLN02516, methylenetetrahydrofolate dehydrogenase
(NADP+).
Length = 299
Score = 29.9 bits (67), Expect = 3.3
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 200 QALEILKDYLKPGAKVLDIGSGS 222
QA+ I D++KPGA V+D+G+ +
Sbjct: 220 QAMMIKGDWIKPGAAVIDVGTNA 242
Score = 29.9 bits (67), Expect = 3.3
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 384 QALEILKDYLKPGAKVLDIGSGS 406
QA+ I D++KPGA V+D+G+ +
Sbjct: 220 QAMMIKGDWIKPGAAVIDVGTNA 242
>gnl|CDD|224801 COG1889, NOP1, Fibrillarin-like rRNA methylase [Translation,
ribosomal structure and biogenesis].
Length = 231
Score = 29.6 bits (67), Expect = 3.3
Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 208 YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 243
+K G+KVL +G+ SG + ++ +VG G++YAVE
Sbjct: 73 PIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVE 107
Score = 29.6 bits (67), Expect = 3.3
Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 392 YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 427
+K G+KVL +G+ SG + ++ +VG G++YAVE
Sbjct: 73 PIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVE 107
>gnl|CDD|237857 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional.
Length = 444
Score = 29.8 bits (68), Expect = 3.3
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 199 AQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAV---EHIEDLVAQANKS 255
A AL+ K G VLD + G T +A ++ TGKV A+ EH L+ + K
Sbjct: 243 APALDP-----KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKR 297
Query: 256 MH 257
+
Sbjct: 298 LG 299
Score = 29.8 bits (68), Expect = 3.3
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 383 AQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAV---EHIEDLVAQANKS 439
A AL+ K G VLD + G T +A ++ TGKV A+ EH L+ + K
Sbjct: 243 APALDP-----KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKR 297
Query: 440 MH 441
+
Sbjct: 298 LG 299
>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal
structure and biogenesis].
Length = 198
Score = 29.2 bits (66), Expect = 3.8
Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 31/129 (24%)
Query: 56 EGKKVLDIGSGNGYFT---ALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 112
EGK VLD+G+G G ALL +V+ ++ P+ ++ A N G
Sbjct: 45 EGKTVLDLGAGTGILAIGAALLGAS-----RVLAVDIDPEALEIARANAEEL------LG 93
Query: 113 RIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEGVRFGHIASPKVESVMRSIDR------ 166
++FV+ D +D + I + P G + H P + + D
Sbjct: 94 DVEFVVADVSDFRG---KFDTV-----IMNPPFGSQRRHADRPFLLKALEISDVVYSIHK 145
Query: 167 ---RRFIER 172
R F+E+
Sbjct: 146 AGSRDFVEK 154
Score = 28.8 bits (65), Expect = 5.2
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 19/81 (23%)
Query: 212 GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE----HIEDLVAQANKSMHTYYPNLMEGG 267
G VLD+G+G+G L A A ++G + +V AV+ +E +A+AN G
Sbjct: 46 GKTVLDLGAGTGIL-AIGAALLGAS-RVLAVDIDPEALE--IARANAEEL--------LG 93
Query: 268 RVQFVDGDGREGHAAEGPYDV 288
V+FV D + G +D
Sbjct: 94 DVEFVVADVSD---FRGKFDT 111
>gnl|CDD|223298 COG0220, COG0220, Predicted S-adenosylmethionine-dependent
methyltransferase [General function prediction only].
Length = 227
Score = 29.2 bits (66), Expect = 4.1
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 28 MQAPFQDNTKFSKFQQAMVLDDLSEEL--TEGKKVLDIGSGNGYFTALLA 75
+ +DN D S VL+IG G G F +A
Sbjct: 18 QKNALEDNWPRLGLDPQEEPGDWSALFGNNNAPIVLEIGFGMGEFLVEMA 67
>gnl|CDD|153081 cd00643, HMG-CoA_reductase_classI, Class I
hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase
(HMGR). Hydroxymethylglutaryl-coenzyme A (HMG-CoA)
reductase (HMGR), class I enzyme, homotetramer.
Catalyzes the synthesis of coenzyme A and mevalonate in
isoprenoid synthesis. In mammals this is the rate
limiting committed step in cholesterol biosynthesis.
Class I enzymes are found predominantly in eukaryotes
and contain N-terminal membrane regions. With the
exception of Archaeoglobus fulgidus, most archeae are
assigned to class I, based on sequence similarity of the
active site, even though they lack membrane regions.
Yeast and human HMGR are divergent in their N-terminal
regions, but are conserved in their active site. In
contrast, human and bacterial HMGR differ in their
active site architecture.
Length = 403
Score = 29.4 bits (67), Expect = 4.2
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 141 EDIPEGVRFGHIASPKVESVMRSIDRRRFIER 172
E+I + + GHI K+E + +R I R
Sbjct: 1 EEIIDLLSAGHIKLYKLEKSLEDAERAVRIRR 32
>gnl|CDD|129628 TIGR00537, hemK_rel_arch, HemK-related putative methylase. The
gene hemK from E. coli was found to contribute to heme
biosynthesis and originally suggested to be
protoporphyrinogen oxidase (Medline 95189105).
Functional analysis of the nearest homolog in
Saccharomyces cerevisiae, YNL063w, finds it is not
protoporphyrinogen oxidase and sequence analysis
suggests that HemK homologs have
S-adenosyl-methionine-dependent methyltransferase
activity (Medline 99237242). Homologs are found, usually
in a single copy, in nearly all completed genomes, but
varying somewhat in apparent domain architecture. This
model represents an archaeal and eukaryotic protein
family that lacks an N-terminal domain found in HemK and
its eubacterial homologs. It is found in a single copy
in the first six completed archaeal and eukaryotic
genomes [Unknown function, Enzymes of unknown
specificity].
Length = 179
Score = 28.7 bits (64), Expect = 5.2
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 13/90 (14%)
Query: 45 MVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISG 104
++ +L E + VL+IG+G G L GK ++ + P V+ N
Sbjct: 10 LLEANLRE--LKPDDVLEIGAGTGLVAIRLK---GKGKCILTTDINPFAVKELRENAKLN 64
Query: 105 NPEFVKDGRIKFVLGDGRKGYLDEAPYDII 134
N + V+ D KG +D+I
Sbjct: 65 NVG------LDVVMTDLFKGV--RGKFDVI 86
>gnl|CDD|238521 cd01088, MetAP2, Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 291
Score = 29.1 bits (66), Expect = 5.6
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 196 KVHAQALEILKDYLKPGAKVLDI 218
++H Q + + +KPG +L+I
Sbjct: 9 EIHRQVRKYAQSLIKPGMTLLEI 31
Score = 28.4 bits (64), Expect = 9.0
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 380 DVHAQALEILKDYLKPGAKVLDI 402
++H Q + + +KPG +L+I
Sbjct: 9 EIHRQVRKYAQSLIKPGMTLLEI 31
>gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional.
Length = 223
Score = 28.9 bits (65), Expect = 5.7
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGR 268
L PG +VLD+ +GSG L A G V AV D+ +A +S L+ G
Sbjct: 34 LGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAV----DISRRAVRS--ARLNALLAGVD 85
Query: 269 VQFVDGDGREGHAAEGPYDVI 289
V GD P+DV+
Sbjct: 86 VDVRRGDWAR-AVEFRPFDVV 105
>gnl|CDD|223109 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation)
[Translation, ribosomal structure and biogenesis].
Length = 259
Score = 28.7 bits (65), Expect = 6.3
Identities = 22/116 (18%), Positives = 40/116 (34%), Gaps = 19/116 (16%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 112
++ G VL+IG G G T L + + +V IE +L + F
Sbjct: 27 NISPGDNVLEIGPGLGALTEPL---LERAARVTAIEIDRRLAEVLKE-------RFAPYD 76
Query: 113 RIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEGVRFGHIASPKVESVMRSIDRRR 168
+ + GD K V ++P +I+SP + ++ +
Sbjct: 77 NLTVINGDALKFDFPSLAQPYKVVA----NLPY-----NISSPILFKLLEEKFIIQ 123
Score = 28.3 bits (64), Expect = 7.9
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVA 250
+ PG VL+IG G G LT ++ +V A+E L
Sbjct: 28 ISPGDNVLEIGPGLGALT---EPLLERAARVTAIEIDRRLAE 66
Score = 28.3 bits (64), Expect = 7.9
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVA 434
+ PG VL+IG G G LT ++ +V A+E L
Sbjct: 28 ISPGDNVLEIGPGLGALT---EPLLERAARVTAIEIDRRLAE 66
>gnl|CDD|237858 PRK14904, PRK14904, 16S rRNA methyltransferase B; Provisional.
Length = 445
Score = 28.9 bits (65), Expect = 7.0
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 199 AQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 243
QAL L +PG+ VLD+ + G + MA ++ G++ AV+
Sbjct: 238 TQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVD 282
Score = 28.9 bits (65), Expect = 7.0
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 383 AQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 427
QAL L +PG+ VLD+ + G + MA ++ G++ AV+
Sbjct: 238 TQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVD 282
>gnl|CDD|211555 TIGR00138, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase
GidB. GidB (glucose-inhibited division protein B)
appears to be present and in a single copy in nearly
all complete eubacterial genomes. It is missing only
from some obligate intracellular species of various
lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma,
Buchnera, etc.). GidB shows a methytransferase fold in
its the crystal structure, and acts as a
7-methylguanosine (m(7)G) methyltransferase, apparently
specific to 16S rRNA [Protein synthesis, tRNA and rRNA
base modification].
Length = 181
Score = 28.0 bits (63), Expect = 7.6
Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 46 VLDDLS-EELTEGKKVLDIGSGNG 68
+LD L+ E +GK+V+DIGSG G
Sbjct: 31 ILDSLALLEYLDGKRVIDIGSGAG 54
>gnl|CDD|202251 pfam02475, Met_10, Met-10+ like-protein. The methionine-10 mutant
allele of N. crassa codes for a protein of unknown
function. However, homologous proteins have been found
in yeast suggesting this protein may be involved in
methionine biosynthesis, transport and/or utilisation.
Length = 199
Score = 28.1 bits (63), Expect = 8.1
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 56 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIK 115
EG+ V+D+ +G G F+ +A K +V +E P+ V+ N+ E G I
Sbjct: 100 EGEVVVDMFAGIGPFSIPIA-KHSKAKRVYAVELNPEAVKYLKENIKLNKVE----GVIS 154
Query: 116 FVLGDGRK 123
+LGD R
Sbjct: 155 PILGDVRD 162
>gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9
3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol
methylase; Provisional.
Length = 233
Score = 28.2 bits (64), Expect = 8.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 212 GAKVLDIGSGSGYLTACMAHM 232
G +VLD+G G G L+ MA +
Sbjct: 49 GKRVLDVGCGGGILSESMARL 69
Score = 28.2 bits (64), Expect = 8.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 396 GAKVLDIGSGSGYLTACMAHM 416
G +VLD+G G G L+ MA +
Sbjct: 49 GKRVLDVGCGGGILSESMARL 69
>gnl|CDD|213239 cd03272, ABC_SMC3_euk, ATP-binding cassette domain of eukaryotic
SMC3 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 243
Score = 28.4 bits (64), Expect = 8.9
Identities = 26/117 (22%), Positives = 40/117 (34%), Gaps = 33/117 (28%)
Query: 99 HNVI-----SGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEGVRF---- 149
HNV+ SG F I+FVL D +E ++H G + V
Sbjct: 25 HNVVVGRNGSGKSNFF--AAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDN 82
Query: 150 --GHIASPKVESVMR----------SIDRRRFIERPIMN----------NPYWDIPQ 184
K E +R +D++ + +MN NPY+ +PQ
Sbjct: 83 SDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQ 139
>gnl|CDD|236119 PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase;
Reviewed.
Length = 364
Score = 28.3 bits (64), Expect = 9.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 235 PTGKVYAVEHIEDLVAQA 252
PTG+V V+H+ +VA A
Sbjct: 160 PTGRVLGVDHLRKVVAWA 177
Score = 28.3 bits (64), Expect = 9.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 419 PTGKVYAVEHIEDLVAQA 436
PTG+V V+H+ +VA A
Sbjct: 160 PTGRVLGVDHLRKVVAWA 177
>gnl|CDD|202783 pfam03848, TehB, Tellurite resistance protein TehB.
Length = 192
Score = 27.9 bits (62), Expect = 9.9
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 376 YDDLDVHAQALEILKDYLKPGAKVLDIGSGSG----YLTACMAHMVGPTGKVYAVEHIED 431
Y+ H++ LE +K +KPG K LD+G G G +L+ + ++ +++D
Sbjct: 13 YNTTPTHSEVLEAVK-TVKPG-KALDLGCGQGRNSLFLSLLGYDVTAVDHNENSIANLQD 70
Query: 432 LVAQANKSMHT 442
+ + N + T
Sbjct: 71 IKEKENLDIPT 81
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.417
Gapped
Lambda K H
0.267 0.0829 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,092,139
Number of extensions: 2616644
Number of successful extensions: 3296
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3230
Number of HSP's successfully gapped: 280
Length of query: 492
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 391
Effective length of database: 6,457,848
Effective search space: 2525018568
Effective search space used: 2525018568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.1 bits)