RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7834
(492 letters)
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl
homocysteine, protein repair; HET: SAH; 1.50A {Homo
sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Length = 226
Score = 205 bits (524), Expect = 1e-63
Identities = 88/203 (43%), Positives = 115/203 (56%), Gaps = 14/203 (6%)
Query: 147 VRFGHIASPKVESVMRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILK 206
+ G I + KV VM + DR + + NPY D PQS+GF + +S+P +HA ALE+L
Sbjct: 17 RKNGIIKTDKVFEVMLATDRSHYAK----CNPYMDSPQSIGFQATISAPHMHAYALELLF 72
Query: 207 DYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEG 266
D L GAK LD+GSGSG LTAC A MVG TGKV ++HI++LV + ++ P L+
Sbjct: 73 DQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSS 132
Query: 267 GRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQLKPGGVMWFTIGNAEEMLKNN 326
GRVQ V GDGR G+A E PYD I+VG A P L+DQLKPGG + +G A
Sbjct: 133 GRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGG----- 187
Query: 327 RRTESNLAVVKAHKKDHGEWEEE 349
L K G + +
Sbjct: 188 ---NQMLEQYD--KLQDGSIKMK 205
Score = 145 bits (368), Expect = 7e-41
Identities = 65/145 (44%), Positives = 87/145 (60%), Gaps = 9/145 (6%)
Query: 1 MLAVDRGHYTTWRPYANCITNIGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKV 60
MLA DR HY PY + +IG+ A + AP A L+ L ++L EG K
Sbjct: 31 MLATDRSHYAKCNPYMDSPQSIGFQATISAPHM---------HAYALELLFDQLHEGAKA 81
Query: 61 LDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGD 120
LD+GSG+G TA A VG TGKVIGI+HI +LV + +NV +P + GR++ V+GD
Sbjct: 82 LDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGD 141
Query: 121 GRKGYLDEAPYDIIHVGGSIEDIPE 145
GR GY +EAPYD IHVG + +P+
Sbjct: 142 GRMGYAEEAPYDAIHVGAAAPVVPQ 166
Score = 106 bits (268), Expect = 8e-27
Identities = 40/75 (53%), Positives = 51/75 (68%)
Query: 381 VHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSM 440
+HA ALE+L D L GAK LD+GSGSG LTAC A MVG TGKV ++HI++LV + ++
Sbjct: 63 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNV 122
Query: 441 HTYYPNLMEGGRVQF 455
P L+ GRVQ
Sbjct: 123 RKDDPTLLSSGRVQL 137
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
methyltransferase, isomerization, protein repair,
S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
melanogaster} SCOP: c.66.1.7
Length = 227
Score = 199 bits (507), Expect = 3e-61
Identities = 72/207 (34%), Positives = 113/207 (54%), Gaps = 19/207 (9%)
Query: 148 RFGHIASPKVESVMRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKD 207
G IAS V M+ DR+ + R NPY D PQ +G G +S+P +HA ALE L+D
Sbjct: 25 DHGVIASDAVAQAMKETDRKHYSPR----NPYMDAPQPIGGGVTISAPHMHAFALEYLRD 80
Query: 208 YLKPGAKVLDIGSGSGYLTACMAHMVGPTG-----KVYAVEHIEDLVAQANKSMHTYYPN 262
+LKPGA++LD+GSGSGYLTAC + G ++ +EH +LV ++ +++T +
Sbjct: 81 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS 140
Query: 263 LMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQLKPGGVMWFTIGNAEEM 322
+++ G++ V+GDGR+G+ PY+ I+VG A P +L++QL GG + +G
Sbjct: 141 MLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVG----- 195
Query: 323 LKNNRRTESNLAVVKAHKKDHGEWEEE 349
+ K +G+ E
Sbjct: 196 ---PDGGSQYMQQYD--KDANGKVEMT 217
Score = 135 bits (342), Expect = 4e-37
Identities = 53/150 (35%), Positives = 77/150 (51%), Gaps = 14/150 (9%)
Query: 1 MLAVDRGHYTTWRPYANCITNIGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKV 60
M DR HY+ PY + IG G + AP A L+ L + L G ++
Sbjct: 38 MKETDRKHYSPRNPYMDAPQPIGGGVTISAPHM---------HAFALEYLRDHLKPGARI 88
Query: 61 LDIGSGNGYFTALLAWCVGKTG-----KVIGIEHIPQLVQRATHNVISGNPEFVKDGRIK 115
LD+GSG+GY TA + G +++GIEH +LV+R+ N+ + + + G++
Sbjct: 89 LDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLL 148
Query: 116 FVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 145
V GDGRKGY APY+ IHVG + D P
Sbjct: 149 IVEGDGRKGYPPNAPYNAIHVGAAAPDTPT 178
Score = 101 bits (253), Expect = 1e-24
Identities = 31/80 (38%), Positives = 53/80 (66%), Gaps = 5/80 (6%)
Query: 381 VHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTG-----KVYAVEHIEDLVAQ 435
+HA ALE L+D+LKPGA++LD+GSGSGYLTAC + G ++ +EH +LV +
Sbjct: 70 MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRR 129
Query: 436 ANKSMHTYYPNLMEGGRVQF 455
+ +++T ++++ G++
Sbjct: 130 SKANLNTDDRSMLDSGQLLI 149
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A
methyltransferase; protein repair, isoaspartyl
formation, P. falciparum; HET: SAH; 2.00A {Plasmodium
falciparum}
Length = 227
Score = 191 bits (487), Expect = 3e-58
Identities = 57/214 (26%), Positives = 95/214 (44%), Gaps = 23/214 (10%)
Query: 147 VRFGHIASPKVESVMRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILK 206
R G I V + M +DR ++I+ PY D P + G +S+P +HA +L+ L
Sbjct: 20 KRRGIIDDDDVYNTMLQVDRGKYIK----EIPYIDTPVYISHGVTISAPHMHALSLKRLI 75
Query: 207 DYLKPGAKVLDIGSGSGYLTACMAH----MVGPTGKVYAVEHIEDLVAQANKSMHTYYPN 262
+ LKPG++ +D+GSGSGYLT CMA + V +E ++DLV + +++ P
Sbjct: 76 NVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPE 135
Query: 263 LMEGGRVQFVDGD----GREGHAAEGPYDVIYVGGAVHHYPFKLMDQLKPGGVMWFTIGN 318
L++ + + + E G +D I+VG + P L+D L G + I
Sbjct: 136 LLKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASELPEILVDLLAENGKLIIPIEE 195
Query: 319 AEEMLKNNRRTESNLAVVKAHKKDHGEWEEEFMG 352
L + KK+ ++
Sbjct: 196 DYTQ---------VLYEIT--KKNGKIIKDRLFD 218
Score = 128 bits (323), Expect = 2e-34
Identities = 46/156 (29%), Positives = 67/156 (42%), Gaps = 23/156 (14%)
Query: 1 MLAVDRGHYTTWRPYANCITNIGYGAHMQAPFQDNTKFSKFQQAMV---LDDLSEELTEG 57
ML VDRG Y PY + I +G + AP M L L L G
Sbjct: 34 MLQVDRGKYIKEIPYIDTPVYISHGVTISAPH------------MHALSLKRLINVLKPG 81
Query: 58 KKVLDIGSGNGYFTALLAWCV----GKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR 113
+ +D+GSG+GY T +A + K VIG+E + LV + N+ PE +K
Sbjct: 82 SRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDN 141
Query: 114 IKFVLGD----GRKGYLDEAPYDIIHVGGSIEDIPE 145
K + + + + +D IHVG S ++PE
Sbjct: 142 FKIIHKNIYQVNEEEKKELGLFDAIHVGASASELPE 177
Score = 96.9 bits (242), Expect = 3e-23
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 381 VHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAH----MVGPTGKVYAVEHIEDLVAQA 436
+HA +L+ L + LKPG++ +D+GSGSGYLT CMA + V +E ++DLV +
Sbjct: 66 MHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFS 125
Query: 437 NKSMHTYYPNLMEGGRVQF 455
+++ P L++ +
Sbjct: 126 LENIKRDKPELLKIDNFKI 144
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 189 bits (482), Expect = 1e-57
Identities = 59/189 (31%), Positives = 89/189 (47%), Gaps = 11/189 (5%)
Query: 147 VRFGHIASPKVESVMRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILK 206
+R G+I S +V + + R F+ + Y D P +G+G +S+ + E+L
Sbjct: 15 IREGYIKSKRVIDALLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIHMVGMMCELLD 74
Query: 207 DYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEG 266
LKPG KVL+IG+G GY A A +VG G V ++E I +L +A + L +
Sbjct: 75 --LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAER-------TLRKL 125
Query: 267 G--RVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQLKPGGVMWFTIGNAEEMLK 324
G V + GDG G+ PYD IY A P L+ QLK GG + +G + L
Sbjct: 126 GYDNVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVGRYLQRLV 185
Query: 325 NNRRTESNL 333
+ +
Sbjct: 186 LAEKRGDEI 194
Score = 120 bits (303), Expect = 1e-31
Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 20/149 (13%)
Query: 1 MLAVDRGHY----TTWRPYANCITNIGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTE 56
+L V R + Y + IGYG + A M+ + L +L
Sbjct: 29 LLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIHM---------VGMMCELL--DLKP 77
Query: 57 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKF 116
G KVL+IG+G GY A+ A VG+ G V+ IE IP+L ++A + + +
Sbjct: 78 GMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTL-----RKLGYDNVIV 132
Query: 117 VLGDGRKGYLDEAPYDIIHVGGSIEDIPE 145
++GDG GY APYD I+ + IPE
Sbjct: 133 IVGDGTLGYEPLAPYDRIYTTAAGPKIPE 161
Score = 89.5 bits (223), Expect = 1e-20
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 381 VHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
+ E+L LKPG KVL+IG+G GY A A +VG G V ++E I +L +A +
Sbjct: 65 MVGMMCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAER 120
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 180 bits (458), Expect = 7e-54
Identities = 55/214 (25%), Positives = 86/214 (40%), Gaps = 30/214 (14%)
Query: 141 EDIPEGVRFGHIASPKVESVMRSIDRRRFIERPIMNNPYWDIPQSL--GFGSVMSSPKVH 198
E+I ++ + ++ +DR F+ + + Y ++L G ++ +
Sbjct: 5 EEILRKIK-----TQELAEAFNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNLG 59
Query: 199 AQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHT 258
L+ L L G KVL+IG+G GY TA +A +V KV +VE E + A+K
Sbjct: 60 IFMLDELD--LHKGQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASK---- 110
Query: 259 YYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQLKPGGVMWFTIGN 318
L ++ + GDG G+ E PYD + V K +QLK GG+M IG
Sbjct: 111 ---LLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIGV 167
Query: 319 AEEMLKNNRRTESNLAVVKAHKKDHGEWEEEFMG 352
L V KK + E
Sbjct: 168 GRVQ---------KLYKVI--KKGNSPSLENLGE 190
Score = 112 bits (282), Expect = 1e-28
Identities = 43/151 (28%), Positives = 65/151 (43%), Gaps = 27/151 (17%)
Query: 1 MLAVDRGHY----TTWRPYANCITN--IGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEEL 54
VDR + YA+ I G + A +LD+L +L
Sbjct: 20 FNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNL---------GIFMLDEL--DL 68
Query: 55 TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRI 114
+G+KVL+IG+G GY+TAL+A V K V+ +E ++ A+ I
Sbjct: 69 HKGQKVLEIGTGIGYYTALIAEIVDK---VVSVEINEKMYNYASKL-------LSYYNNI 118
Query: 115 KFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 145
K +LGDG GY +E PYD + V + +
Sbjct: 119 KLILGDGTLGYEEEKPYDRVVVWATAPTLLC 149
Score = 80.8 bits (200), Expect = 1e-17
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
Query: 381 VHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSM 440
+ L+ L L G KVL+IG+G GY TA +A +V KV +VE E + A+K
Sbjct: 58 LGIFMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASK-- 110
Query: 441 HTYYPNLMEGGRVQF 455
L ++
Sbjct: 111 -----LLSYYNNIKL 120
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann
methyltransferase, protein repair isomerization; HET:
SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB:
1jg2_A* 1jg3_A* 1jg4_A*
Length = 235
Score = 179 bits (457), Expect = 1e-53
Identities = 52/163 (31%), Positives = 78/163 (47%), Gaps = 9/163 (5%)
Query: 150 GHIASPKVESVMRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKDYL 209
G I S +VE R +E + D P + G +S+P + A LEI L
Sbjct: 32 GIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIAN--L 89
Query: 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRV 269
KPG +L++G+GSG+ A ++ +V VY +E I +LV A +++ V
Sbjct: 90 KPGMNILEVGTGSGWNAALISEIVKT--DVYTIERIPELVEFAKRNLER-----AGVKNV 142
Query: 270 QFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQLKPGGVM 312
+ GDG +G + PYDVI V P L++QLK GG +
Sbjct: 143 HVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKL 185
Score = 114 bits (288), Expect = 2e-29
Identities = 42/149 (28%), Positives = 64/149 (42%), Gaps = 22/149 (14%)
Query: 1 MLAVDRGHY----TTWRPYANCITNIGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTE 56
L R + + I G + AP A++L+ L
Sbjct: 43 FLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHM---------VAIMLEIA--NLKP 91
Query: 57 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKF 116
G +L++G+G+G+ AL++ V V IE IP+LV+ A N+ E +
Sbjct: 92 GMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNL-----ERAGVKNVHV 144
Query: 117 VLGDGRKGYLDEAPYDIIHVGGSIEDIPE 145
+LGDG KG+ +APYD+I V IPE
Sbjct: 145 ILGDGSKGFPPKAPYDVIIVTAGAPKIPE 173
Score = 82.7 bits (205), Expect = 3e-18
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 381 VHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
+ A LEI LKPG +L++G+GSG+ A ++ +V VY +E I +LV A +
Sbjct: 79 MVAIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVKT--DVYTIERIPELVEFAKR 132
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type
fold, S-adenosyl-L- methionine; HET: SAH; 1.80A
{Escherichia coli}
Length = 210
Score = 169 bits (430), Expect = 5e-50
Identities = 58/184 (31%), Positives = 89/184 (48%), Gaps = 14/184 (7%)
Query: 152 IASPKVESVMRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKDYLKP 211
I +V + + ++ R +F++ + +I +G G +S P + A+ E+L+ L P
Sbjct: 20 IQDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARMTELLE--LTP 77
Query: 212 GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGG--RV 269
++VL+IG+GSGY TA +AH+V V +VE I+ L QA + L V
Sbjct: 78 QSRVLEIGTGSGYQTAILAHLVQ---HVCSVERIKGLQWQARR-------RLKNLDLHNV 127
Query: 270 QFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQLKPGGVMWFTIGNAEEMLKNNRRT 329
GDG +G A P+D I V A P LM QL GG++ +G + LK RR
Sbjct: 128 STRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGEEHQYLKRVRRR 187
Query: 330 ESNL 333
Sbjct: 188 GGEF 191
Score = 103 bits (258), Expect = 2e-25
Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 23/149 (15%)
Query: 1 MLAVDRGHY--TTWRP--YANCITNIGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTE 56
+ AV R + + + N IG G + P+ A + + L ELT
Sbjct: 29 LAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYM---------VARMTELL--ELTP 77
Query: 57 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKF 116
+VL+IG+G+GY TA+LA V V +E I L +A + + + +
Sbjct: 78 QSRVLEIGTGSGYQTAILAHLVQH---VCSVERIKGLQWQARRRL-----KNLDLHNVST 129
Query: 117 VLGDGRKGYLDEAPYDIIHVGGSIEDIPE 145
GDG +G+ AP+D I V + +IP
Sbjct: 130 RHGDGWQGWQARAPFDAIIVTAAPPEIPT 158
Score = 73.8 bits (182), Expect = 3e-15
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 5/58 (8%)
Query: 381 VHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
+ A+ E+L+ L P ++VL+IG+GSGY TA +AH+V V +VE I+ L QA +
Sbjct: 65 MVARMTELLE--LTPQSRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARR 117
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 166 bits (422), Expect = 1e-47
Identities = 55/206 (26%), Positives = 76/206 (36%), Gaps = 26/206 (12%)
Query: 154 SPKVESVMRSIDRRRFIERPI-MNNPYWD----IPQSLGFGSVMSSPKVHAQALEILKDY 208
S + I R F+ + ++ Y D S S P + A +E +
Sbjct: 15 SDHIAKAFLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG-- 72
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGG- 267
L G +VL+IG G+GY A M+ +VG G V +VE+ + A + N+ G
Sbjct: 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR-------NVERLGI 125
Query: 268 -RVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQLKPGGVMWFTIGNAEEMLKNN 326
V FV GDG G PYDVI+V V P QLK GG + I
Sbjct: 126 ENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINL-------- 177
Query: 327 RRTESNLAVVKAHKKDHGEWEEEFMG 352
S KK +
Sbjct: 178 --KLSRRQPAFLFKKKDPYLVGNYKL 201
Score = 105 bits (263), Expect = 2e-25
Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 25/154 (16%)
Query: 1 MLAVDRGH-----YTTWRPYANC----ITNIGYGAHMQAPFQDNTKFSKFQQAMVLDDLS 51
L + R Y Y + + + P A+ ++ +
Sbjct: 22 FLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSL---------MALFMEWV- 71
Query: 52 EELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKD 111
L +G +VL+IG G GY A+++ VG+ G V+ +E+ ++ + A NV E +
Sbjct: 72 -GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNV-----ERLGI 125
Query: 112 GRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 145
+ FV GDG G + +PYD+I V ++++PE
Sbjct: 126 ENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPE 159
Score = 86.3 bits (214), Expect = 7e-19
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 381 VHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
+ A +E + L G +VL+IG G+GY A M+ +VG G V +VE+ + A +
Sbjct: 63 LMALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR 118
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI,
tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Length = 258
Score = 83.6 bits (206), Expect = 3e-18
Identities = 44/198 (22%), Positives = 75/198 (37%), Gaps = 18/198 (9%)
Query: 159 SVMRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKDYLKPGAKVLDI 218
V+R+ + + + + + PK + + +L L PG +VL+
Sbjct: 49 GVVRTHLGEELS---VHRPTLEEYLLHMKRSATPTYPKDASAMVTLLD--LAPGMRVLEA 103
Query: 219 GSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGRE 278
G+GSG LT +A VG G V + E +AQA +++ + V+F G E
Sbjct: 104 GTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVR----AFWQVENVRFHLGKLEE 159
Query: 279 GHAAEGPYDVIYVG-GAVHHYPFKLMDQLKPGGVMWFTIGNAEEMLKNNRRTESNLAVVK 337
E YD + + K LKP + + N ++L+ R E++ +
Sbjct: 160 AELEEAAYDGVALDLMEPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFRL- 218
Query: 338 AHKKDHGEWEEEFMGRLW 355
E E R W
Sbjct: 219 -------ERVLEVGWREW 229
Score = 56.2 bits (135), Expect = 4e-09
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 112
+L G +VL+ G+G+G T LA VG+ G V E P + +A NV F +
Sbjct: 93 DLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNV----RAFWQVE 148
Query: 113 RIKFVLGDGRKGYLDEAPYDIIHV 136
++F LG + L+EA YD + +
Sbjct: 149 NVRFHLGKLEEAELEEAAYDGVAL 172
Score = 50.4 bits (120), Expect = 4e-07
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTY 443
L PG +VL+ G+GSG LT +A VG G V + E +AQA +++ +
Sbjct: 94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAF 144
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 79.3 bits (195), Expect = 8e-17
Identities = 41/202 (20%), Positives = 71/202 (35%), Gaps = 25/202 (12%)
Query: 159 SVMRSIDRRRF-IERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKDYLKPGAKVLD 217
++S F I RP + D + G + PK A + + PG +++
Sbjct: 46 EAIKSHKGHEFKILRPRIV----DYLDKMKRGPQIVHPKDAALIVAYAG--ISPGDFIVE 99
Query: 218 IGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGR 277
G GSG LT +A++VGP G+V + E ED A +++ RV D
Sbjct: 100 AGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWA----GFDDRVTIKLKDIY 155
Query: 278 EGHAAEGPYDVIYVGGAVHHYPFKLMDQLKPGGVMWFTIGNAEEMLKNNRRTESNLAVVK 337
EG E VI LKPGG + ++++ + +
Sbjct: 156 EGIEEENVDHVILDLPQPERVVEHAAKALKPGGFFVAYTPCSNQVMR----------LHE 205
Query: 338 AHKKDHGEWEE----EFMGRLW 355
++ + + +
Sbjct: 206 KLREFKDYFMKPRTINVLVFDQ 227
Score = 54.2 bits (130), Expect = 2e-08
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 112
++ G +++ G G+G T LA VG G+V+ E + A N+ D
Sbjct: 90 GISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENI----KWAGFDD 145
Query: 113 RIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEGVR 148
R+ L D +G +E +I E + E
Sbjct: 146 RVTIKLKDIYEGIEEENVDHVILDLPQPERVVEHAA 181
Score = 54.2 bits (130), Expect = 2e-08
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYY 444
+ PG +++ G GSG LT +A++VGP G+V + E ED A +++
Sbjct: 91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAG 142
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 76.9 bits (189), Expect = 4e-16
Identities = 37/176 (21%), Positives = 68/176 (38%), Gaps = 19/176 (10%)
Query: 181 DIPQSLGFGSVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVY 240
I + + PK L L +VL+ G+GSG L A ++ + G+V+
Sbjct: 63 IILLGFERKTQIIYPKDSFYIALKLN--LNKEKRVLEFGTGSGALLAVLSEVA---GEVW 117
Query: 241 AVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYV-GGAVHHYP 299
E +E+ A K++ G V+F + D ++ EG + +V HY
Sbjct: 118 TFEAVEEFYKTAQKNLK----KFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDVREPWHYL 173
Query: 300 FKLMDQLKPGGVMWFTIGNAEEMLKNNRRTESNLAVVKAHKKDHGEWEEEFMGRLW 355
K+ L G + F + A +++K E+ ++ E + R +
Sbjct: 174 EKVHKSLMEGAPVGFLLPTANQVIKLLESIENYFGNLEV---------VEILHRHY 220
Score = 45.7 bits (108), Expect = 1e-05
Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 15/124 (12%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 112
L + K+VL+ G+G+G A+L+ G+ E + + + A N+ +F
Sbjct: 88 NLNKEKRVLEFGTGSGALLAVLSEVAGEVW---TFEAVEEFYKTAQKNL----KKFNLGK 140
Query: 113 RIKFVLGDGRKGYLDEAPYDIIHV-GGSIEDIPEGVR-----FGHIA--SPKVESVMRSI 164
+KF D + + E + V E V + P V++ +
Sbjct: 141 NVKFFNVDFKDAEVPEGIFHAAFVDVREPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLL 200
Query: 165 DRRR 168
+
Sbjct: 201 ESIE 204
Score = 43.4 bits (102), Expect = 7e-05
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYY 444
L +VL+ G+GSG L A ++ + G+V+ E +E+ A K++ +
Sbjct: 89 LNKEKRVLEFGTGSGALLAVLSEVA---GEVWTFEAVEEFYKTAQKNLKKFN 137
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 77.4 bits (190), Expect = 4e-16
Identities = 37/181 (20%), Positives = 69/181 (38%), Gaps = 10/181 (5%)
Query: 152 IASPKVESVMRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKDYLKP 211
E + S ++ +I P D ++ + + PK + +L +K
Sbjct: 59 FEKGPGEIIRTSAGKKGYILIP----SLIDEIMNMKRRTQIVYPKDSSFIAMMLD--VKE 112
Query: 212 GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQF 271
G +++D G GSG + A +A VG +GKV+A E E+ A ++ + RV
Sbjct: 113 GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW----GLIERVTI 168
Query: 272 VDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQLKPGGVMWFTIGNAEEMLKNNRRTES 331
D EG + + +Y K + LK GG ++ + ++ +
Sbjct: 169 KVRDISEGFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQE 228
Query: 332 N 332
Sbjct: 229 L 229
Score = 56.2 bits (135), Expect = 5e-09
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYY 444
+K G +++D G GSG + A +A VG +GKV+A E E+ A ++ +
Sbjct: 110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG 161
Score = 51.9 bits (124), Expect = 1e-07
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 13/124 (10%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 112
++ EG +++D G G+G A+LA VG +GKV E + + A N+ ++
Sbjct: 109 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNL----TKWGLIE 164
Query: 113 RIKFVLGDGRKGYLDEAPYDIIHVGGS-----IEDIPEGVRFGH---IASPKVESVMRSI 164
R+ + D +G DE D + + I+ E ++ G P V ++
Sbjct: 165 RVTIKVRDISEG-FDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETL 223
Query: 165 DRRR 168
+ +
Sbjct: 224 KKLQ 227
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 78.3 bits (192), Expect = 4e-16
Identities = 39/217 (17%), Positives = 76/217 (35%), Gaps = 29/217 (13%)
Query: 152 IASPKVESVMRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKDYLKP 211
+ + + S ++ + RP D + G+ ++ PK L ++ + P
Sbjct: 52 VGKFPGQILRSSFGKQYMLRRP----ALEDYVVLMKRGTAITFPKDINMILSMMD--INP 105
Query: 212 GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEG----- 266
G VL+ GSGSG ++ ++ VG G+V + E +D A K+ + +
Sbjct: 106 GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEW 165
Query: 267 -GRVQFVDGDGRE--GHAAEGPYDVIYVG-GAVHHYPFKLMDQLKPGGVMWFTIGNAEEM 322
V F+ D +D + + H LK GGV + N ++
Sbjct: 166 PDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVNITQV 225
Query: 323 LKNNRRTESNLAVVKAHKKDHGEWEE----EFMGRLW 355
++ ++ + E + R W
Sbjct: 226 IE----------LLDGIRTCELALSCEKISEVIVRDW 252
Score = 54.0 bits (129), Expect = 4e-08
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 392 YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPN 446
+ PG VL+ GSGSG ++ ++ VG G+V + E +D A K+ + +
Sbjct: 102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDS 156
Score = 49.8 bits (118), Expect = 9e-07
Identities = 28/137 (20%), Positives = 48/137 (35%), Gaps = 16/137 (11%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNV----------- 101
++ G VL+ GSG+G + L+ VG G+VI E A N
Sbjct: 102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSH 161
Query: 102 ISGNPEFVKD--GRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEGVR-FGHIA--SPK 156
+ P+ V I D + D D+++ ++ ++ G A
Sbjct: 162 VEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVN 221
Query: 157 VESVMRSIDRRRFIERP 173
+ V+ +D R E
Sbjct: 222 ITQVIELLDGIRTCELA 238
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 72.3 bits (177), Expect = 7e-15
Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 9/158 (5%)
Query: 192 MSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQ 251
++ Q+ + +K ++K G V+D G+G TA +A +VG G+V+ + + +A
Sbjct: 3 LTIKNSLGQSHDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIAN 62
Query: 252 ANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQLKPGGV 311
K + RV + DG + V V + + P
Sbjct: 63 TTKKLTDLNLI----DRVTLI-KDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPET 117
Query: 312 MWFTIGNAEEMLKNNRRTESNLAVVKAHKKDHGEWEEE 349
+ A E+L + VV + D G E+E
Sbjct: 118 TIQALSKAMELLVTGGI----ITVVIYYGGDTGFEEKE 151
Score = 63.0 bits (153), Expect = 1e-11
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 387 EILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
+ +K ++K G V+D G+G TA +A +VG G+V+ + + +A K
Sbjct: 14 DYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTK 65
Score = 57.6 bits (139), Expect = 7e-10
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 50 LSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFV 109
+ + EG V+D GNG TA LA VG+ G+V G + + + T + +
Sbjct: 16 IKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKL----TDLN 71
Query: 110 KDGRIKFVLGD 120
R+ +
Sbjct: 72 LIDRVTLIKDG 82
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 71.3 bits (175), Expect = 2e-14
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 16/117 (13%)
Query: 203 EILKDY-LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYP 261
++LK++ LK G VLD+G+G+G+ ++ MVG GKVYA++ E++V A +
Sbjct: 28 KVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWE------- 80
Query: 262 NLMEGG--RVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFK------LMDQLKPGG 310
+ + G V+ + + + + D I++ H L KP
Sbjct: 81 KVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFA 137
Score = 60.5 bits (147), Expect = 1e-10
Identities = 22/53 (41%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 387 EILKDY-LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
++LK++ LK G VLD+G+G+G+ ++ MVG GKVYA++ E++V A +
Sbjct: 28 KVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWE 80
Score = 58.6 bits (142), Expect = 5e-10
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 54 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR 113
L EG VLD+G+G G++ L+ VG+ GKV I+ ++V A V +
Sbjct: 35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-----N 89
Query: 114 IKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 145
++ + + K L + D I + + ++ E
Sbjct: 90 VEVLKSEENKIPLPDNTVDFIFMAFTFHELSE 121
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural
genomics, protein structure initiative; HET: SAM; 1.98A
{Mycobacterium tuberculosis} SCOP: c.66.1.13
Length = 280
Score = 72.1 bits (176), Expect = 3e-14
Identities = 39/176 (22%), Positives = 68/176 (38%), Gaps = 12/176 (6%)
Query: 181 DIPQSLGFGSVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVY 240
D S+ G + PK AQ + + PGA+VL+ G+GSG LT + VGP G+V
Sbjct: 71 DYVMSMPRGPQVIYPKDAAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVI 128
Query: 241 AVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHH-YP 299
+ E D A +++ Y + + V D + +G D +
Sbjct: 129 SYEQRADHAEHARRNVSGCYGQPPD--NWRLVVSDLADSELPDGSVDRAVLDMLAPWEVL 186
Query: 300 FKLMDQLKPGGVMWFTIGNAEEMLKNNRRTESNLAVVKAHKKDHGEWEEEFMGRLW 355
+ L GGV+ + ++ + + ++A + E + R W
Sbjct: 187 DAVSRLLVAGGVLMVYVATVTQLSR-------IVEALRAKQCWTEPRAWETLQRGW 235
Score = 48.2 bits (114), Expect = 2e-06
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 388 ILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYY 444
+ + + PGA+VL+ G+GSG LT + VGP G+V + E D A +++ Y
Sbjct: 92 VHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCY 148
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 72.8 bits (178), Expect = 5e-14
Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 15/130 (11%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGG- 267
GA VLD+G G+G + +VG GKV V+ +++ + A K + +
Sbjct: 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPS 140
Query: 268 --RVQFVDGDGREGHAAEGP------YDVIYVGGAVHHYP-----FKLMDQ-LKPGGVMW 313
V+F+ G AE D++ + FK + + L+ GG ++
Sbjct: 141 RSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELY 200
Query: 314 FTIGNAEEML 323
F+ A+ L
Sbjct: 201 FSDVYADRRL 210
Score = 56.6 bits (136), Expect = 8e-09
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGR 452
GA VLD+G G+G + +VG GKV V+ +++ + A K + +
Sbjct: 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPS 140
Query: 453 VQFTE 457
Sbjct: 141 RSNVR 145
Score = 55.9 bits (134), Expect = 1e-08
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 112
EG VLD+G G G L + VG+ GKVIG++ + ++ A V +F
Sbjct: 80 GSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSP 139
Query: 113 ---RIKFVLGD 120
++F+ G
Sbjct: 140 SRSNVRFLKGF 150
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 69.1 bits (169), Expect = 2e-13
Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 22/157 (14%)
Query: 179 YWDIPQSLGFGSVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGK 238
Y+ + + G GS P+ +A+ + + L AK+ DIG G+G T +A V G+
Sbjct: 19 YFKLLKRQGPGS----PEATRKAVSFINE-LTDDAKIADIGCGTGGQTLFLADYVK--GQ 71
Query: 239 VYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHY 298
+ ++ D + N+ + N RV+ + G D+I+ GA+++
Sbjct: 72 ITGIDLFPDFIEIFNE--NAVKANC--ADRVKGITGSMDNLPFQNEELDLIWSEGAIYNI 127
Query: 299 PFKLMDQ-----LKPGGVM------WFTIGNAEEMLK 324
F+ LK GG + WFT E+
Sbjct: 128 GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIED 164
Score = 58.7 bits (142), Expect = 7e-10
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 49 DLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEF 108
ELT+ K+ DIG G G T LA V G++ GI+ P ++ N + N
Sbjct: 39 SFINELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANC-- 94
Query: 109 VKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIP 144
R+K + G D+I G+I +I
Sbjct: 95 --ADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIG 128
Score = 42.5 bits (100), Expect = 1e-04
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 384 QALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
+A+ + + L AK+ DIG G+G T +A V G++ ++ D + N+
Sbjct: 36 KAVSFINE-LTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNE 87
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 69.0 bits (168), Expect = 3e-13
Identities = 37/235 (15%), Positives = 84/235 (35%), Gaps = 30/235 (12%)
Query: 99 HNVISGNPEFVKDGRIK----FVLGDGR-KGYLDEAPYDIIHVGGSIEDIPEGVRFGH-- 151
H+ + + +K +L G DE+ I+ G + H
Sbjct: 6 HHHHHSSGLVPRGSHMKRSSPVILVSEDEYGKFDESTNSILVKG----------KMHHLG 55
Query: 152 -IASPKVESVMRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKDYLK 210
+ + + + + + + + S + + L+
Sbjct: 56 ISRVIEPGDELIVSGKSFIVSDFSPM----YFGRVIRRNTQIISEIDASYIIMRCG--LR 109
Query: 211 PGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQ 270
PG +L++G GSG +++ + + + G + VE ED + +A ++ + + G V+
Sbjct: 110 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEF----YDIGNVR 165
Query: 271 FVDGDGREGHAAEGPYDVIYVG-GAVHHYPFKLMDQLKPGGVMWFTIGNAEEMLK 324
D + ++ YD + ++ K+ +KPG V F + N ++ K
Sbjct: 166 TSRSDIADFI-SDQMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEK 219
Score = 53.6 bits (128), Expect = 4e-08
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYY 444
L+PG +L++G GSG +++ + + + G + VE ED + +A ++ +Y
Sbjct: 108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY 159
Score = 51.6 bits (123), Expect = 2e-07
Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 112
L G +L++G G+G ++ + + + G + +E +++A N+ EF G
Sbjct: 107 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNL----SEFYDIG 162
Query: 113 RIKFVLGDGRKGYLDE 128
++ D D+
Sbjct: 163 NVRTSRSDIADFISDQ 178
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 68.6 bits (167), Expect = 6e-13
Identities = 20/135 (14%), Positives = 46/135 (34%), Gaps = 20/135 (14%)
Query: 190 SVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLV 249
+V+++ + H L+ +L+PG V + G + + P ++ +++ + +
Sbjct: 97 AVLATRERHGHFRRALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEAL 156
Query: 250 AQANKSMHTYYPNLMEGG---RVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFK----- 301
A + ++ D + YD++ G + P
Sbjct: 157 DGATR-------LAAGHALAGQITLHRQDAWK-LDTREGYDLLTSNGLNIYEPDDARVTE 208
Query: 302 ----LMDQLKPGGVM 312
LKPGG +
Sbjct: 209 LYRRFWQALKPGGAL 223
Score = 57.0 bits (137), Expect = 4e-09
Identities = 26/169 (15%), Positives = 49/169 (28%), Gaps = 22/169 (13%)
Query: 50 LSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFV 109
L L G V + G L + +++GI++ P+ + AT
Sbjct: 112 LQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHAL--- 168
Query: 110 KDGRIKFVLGDGRKGYLD-EAPYDIIHVGGSIEDIPEGVRFGHIASPKVESVMRSIDRR- 167
G+I D K LD YD++ G P+ +V + R +
Sbjct: 169 -AGQITLHRQDAWK--LDTREGYDLLTSNGLNIYEPD--------DARVTELYRRFWQAL 217
Query: 168 ----RFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKDYLKPG 212
+ + P + + P + ++P
Sbjct: 218 KPGGALVTSFLT--PPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPR 264
Score = 56.2 bits (135), Expect = 6e-09
Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 1/103 (0%)
Query: 336 VKAHKKDHGEWEEEFMGRLWRLPALASVEEQKYWYHPNGFYDDLDVHAQALEILKDYLKP 395
+ ++ + EW + ALA +E Y P + H L+ +L+P
Sbjct: 60 LLLYRGLNAEWTHRLVTHQPGSGALAPLERVFYERLP-AVLATRERHGHFRRALQRHLRP 118
Query: 396 GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
G V + G + + P ++ +++ + + A +
Sbjct: 119 GCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATR 161
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 66.0 bits (161), Expect = 2e-12
Identities = 33/195 (16%), Positives = 63/195 (32%), Gaps = 24/195 (12%)
Query: 193 SSPKVHA--QALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVA 250
P + +LD+G+G+G L+A + P V+ E ++
Sbjct: 24 FIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLE 82
Query: 251 QANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPF--------KL 302
A +V++++ D + + E YD++ ++HH +
Sbjct: 83 IAKN-------RFRGNLKVKYIEADYSK-YDFEEKYDMVVSALSIHHLEDEDKKELYKRS 134
Query: 303 MDQLKPGGVMWFTIGNAEEMLKNNRRTESNLAVVKAHKKDHGEWEEEFMGRLWRLPALA- 361
LK G+ E N + + + ++ G EEE R
Sbjct: 135 YSILKESGIFINADLVHGE---TAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKD 191
Query: 362 -SVEEQKYWYHPNGF 375
+ +Q W GF
Sbjct: 192 IEMNQQLNWLKEAGF 206
Score = 45.9 bits (109), Expect = 8e-06
Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 17/121 (14%)
Query: 366 QKYWYHPNGFYDDLDVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYA 425
KY F D + +LD+G+G+G L+A + P
Sbjct: 15 GKYDEQRRKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKY-PEATFTL 73
Query: 426 VEHIEDLVAQANKSMHTYYPNLMEGGRVQFTEMAEKVMQLRVHMMSFTLEEQSIIILSSF 485
V+ E ++ A +V++ E + EE+ +++S+
Sbjct: 74 VDMSEKMLEIAKN-------RFRGNLKVKYIEA---------DYSKYDFEEKYDMVVSAL 117
Query: 486 M 486
Sbjct: 118 S 118
Score = 45.2 bits (107), Expect = 2e-05
Identities = 17/86 (19%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 49 DLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEF 108
++ TE +LD+G+G G +A L + ++ ++++ A + F
Sbjct: 37 SIASVDTENPDILDLGAGTGLLSAFLMEKYPE-ATFTLVDMSEKMLEIAKNR-------F 88
Query: 109 VKDGRIKFVLGDGRKGYLDEAPYDII 134
+ ++K++ D K +E YD++
Sbjct: 89 RGNLKVKYIEADYSKYDFEE-KYDMV 113
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 65.7 bits (160), Expect = 2e-12
Identities = 36/198 (18%), Positives = 69/198 (34%), Gaps = 17/198 (8%)
Query: 203 EILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPN 262
+L Y+K KVLD+ G G + + +V V+ ED++ +A + + N
Sbjct: 30 PLLMKYMKKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRESN 86
Query: 263 LMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQ--------LKPGGVMWF 314
V+F+ GD R+ + +D + ++ H+ ++Q LKP G
Sbjct: 87 ------VEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIM 140
Query: 315 TIGNAEEMLKNNRRTESNLAVVKAHKKDHGEWEEEFMGRLWRLPALASVEEQKYWYHPNG 374
+ E+L + + K + E + V +
Sbjct: 141 YFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWGKTGVE 200
Query: 375 FYDDLDVHAQALEILKDY 392
L +A E + +Y
Sbjct: 201 LLAKLYFTKEAEEKVGNY 218
Score = 51.4 bits (123), Expect = 1e-07
Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 18/132 (13%)
Query: 35 NTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLV 94
N++ + + + L + + + KVLD+ G G F+ LL +V+G++ ++
Sbjct: 17 NSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLE---DYGFEVVGVDISEDMI 73
Query: 95 QRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEGVRFGHIAS 154
++A S ++F++GD RK ++ +D + SI H
Sbjct: 74 RKAREYAKSRES------NVEFIVGDARKLSFEDKTFDYVIFIDSIV---------HFEP 118
Query: 155 PKVESVMRSIDR 166
++ V + + R
Sbjct: 119 LELNQVFKEVRR 130
Score = 44.1 bits (104), Expect = 4e-05
Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
Query: 367 KYWYHPNGFYDDLD------VHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPT 420
K +Y Y D++ +L Y+K KVLD+ G G + +
Sbjct: 4 KEYYRVFPTYTDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG--- 60
Query: 421 GKVYAVEHIEDLVAQANK 438
+V V+ ED++ +A +
Sbjct: 61 FEVVGVDISEDMIRKARE 78
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 66.1 bits (161), Expect = 2e-12
Identities = 39/192 (20%), Positives = 73/192 (38%), Gaps = 39/192 (20%)
Query: 194 SPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQAN 253
SP+V +AL + + L + + DIG G+G T +A V G+V ++ + + N
Sbjct: 30 SPEVTLKALSFIDN-LTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFN 86
Query: 254 KSMHTYYPNLMEGG---RVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQ----- 305
+ N + G RV + G + D+I+ GA+++ F+
Sbjct: 87 R-------NARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFERGLNEWRKY 139
Query: 306 LKPGGVMWFTIGNAEEMLKNNRRTESNLAVVKAHKKDHGEWEEEFMGRLWRLPALASVEE 365
LK GG + + E + T+ A + W + + P + ++
Sbjct: 140 LKKGGYLAVS-----EC---SWFTDERPAEINDF------WMDAY-------PEIDTIPN 178
Query: 366 QKYWYHPNGFYD 377
Q H G+
Sbjct: 179 QVAKIHKAGYLP 190
Score = 55.7 bits (134), Expect = 7e-09
Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 13/130 (10%)
Query: 15 YANCITNIGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALL 74
N I + Q P + + + LTE + DIG G G T +L
Sbjct: 12 ELNLICDFFSNMERQGPGSP-------EVTLKALSFIDNLTEKSLIADIGCGTGGQTMVL 64
Query: 75 AWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 134
A V G+V G++ + + N R+ ++G D+I
Sbjct: 65 AGHVT--GQVTGLDFLSGFIDIFNRNARQSGL----QNRVTGIVGSMDDLPFRNEELDLI 118
Query: 135 HVGGSIEDIP 144
G+I +I
Sbjct: 119 WSEGAIYNIG 128
Score = 42.9 bits (101), Expect = 1e-04
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 384 QALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
+AL + + L + + DIG G+G T +A V G+V ++ + + N+
Sbjct: 36 KALSFIDN-LTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNR 87
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 65.7 bits (160), Expect = 4e-12
Identities = 27/168 (16%), Positives = 60/168 (35%), Gaps = 23/168 (13%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGR 268
+ ++D G G GYL + ++ K ++ E L+A+A +
Sbjct: 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL------LPYD 73
Query: 269 VQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFK------LMDQLKPGGVM------WFTI 316
+F++GD E YD+ + H ++ +K GG + W +
Sbjct: 74 SEFLEGDATE-IELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISN 132
Query: 317 GNAEEMLKNNRRTESNLAVVKAHKKDHGEW--EEEFMGRLWRLPALAS 362
+ + + L V++ + + ++ +G ++P S
Sbjct: 133 MASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGM--KIPIYLS 178
Score = 57.6 bits (139), Expect = 2e-09
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 9/94 (9%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 112
++T+ ++D G G GY +L + + K GI+ L+ A
Sbjct: 19 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY------ 72
Query: 113 RIKFVLGDGRKGYLD-EAPYDIIHVGGSIEDIPE 145
+F+ GD + ++ YDI + +
Sbjct: 73 DSEFLEGDATE--IELNDKYDIAICHAFLLHMTT 104
Score = 53.8 bits (129), Expect = 4e-08
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
+ ++D G G GYL + ++ K ++ E L+A+A +
Sbjct: 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARE 65
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 64.9 bits (158), Expect = 4e-12
Identities = 39/237 (16%), Positives = 74/237 (31%), Gaps = 28/237 (11%)
Query: 156 KVESVMRSIDRRRFIERPIMNNPYWDIPQSL--GFGSVMSSPKVHAQALEILKDYLKPGA 213
KV M + E+ WD M + + + Y+K A
Sbjct: 2 KVGECMTKFNWHESAEK------KWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEA 55
Query: 214 KVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVD 273
+VLD+G G GY T ++ K V+ E ++ + + EG + F+
Sbjct: 56 EVLDVGCGDGYGTYKLSRTG---YKAVGVDISEVMIQKGKE--------RGEGPDLSFIK 104
Query: 274 GDGREGHAAEGPYDVIYVGGAVHHY--PFKLMDQ----LKPGGVMWFTIGNAEEMLKNNR 327
GD ++ I ++ P + +++ LK G I + N
Sbjct: 105 GDLSSLPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENS 164
Query: 328 RTESNLAVVKAHKKDHGEWEEEFMGRLWRLPALASVEEQKYWYHPNGFYDDLDVHAQ 384
V + E+E+ + +++ V ++ L Q
Sbjct: 165 YPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGVYKRGVNEK---MLGQLSTDLQ 218
Score = 51.4 bits (123), Expect = 2e-07
Identities = 19/108 (17%), Positives = 44/108 (40%), Gaps = 11/108 (10%)
Query: 38 FSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRA 97
+ ++ ++ + + + +VLD+G G+GY T L+ K +G++ ++Q+
Sbjct: 35 WDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLS---RTGYKAVGVDISEVMIQKG 91
Query: 98 THNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 145
+ + F+ GD + ++ I S+E E
Sbjct: 92 KER--------GEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEE 131
Score = 49.9 bits (119), Expect = 6e-07
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Query: 366 QKYWYHPNGFYD-------DLDVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVG 418
+K W F++ D + + + Y+K A+VLD+G G GY T ++
Sbjct: 17 EKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTG- 75
Query: 419 PTGKVYAVEHIEDLVAQANKSMHTYYPNL 447
K V+ E ++ + + P+L
Sbjct: 76 --YKAVGVDISEVMIQKGKE--RGEGPDL 100
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 65.1 bits (158), Expect = 7e-12
Identities = 29/210 (13%), Positives = 64/210 (30%), Gaps = 25/210 (11%)
Query: 195 PKVHAQALEILKDYL-KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQAN 253
P + +++ +Y ++D+G G G T MA + P ++ + ++ A
Sbjct: 19 PSYPSDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAE 78
Query: 254 KSMHTYYPNLMEGGRVQFVDGDG------REGHAAEGPYDVIYVGGAVHHYPF-----KL 302
V F + D+I H + F
Sbjct: 79 VIKEGSPDTY---KNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSA 135
Query: 303 MDQLKPGGVMWFTIGNAEEMLKNNRRTESNLAVVKAHKKDHGEWEEEFMGRLWRLPALAS 362
L+ G + G A+ + + + + + ++ +G W P +
Sbjct: 136 YANLRKDGTIAI-WGYADPIFPDYPEFDDLM--------IEVPYGKQGLGPYWEQPGRSR 186
Query: 363 VEEQ-KYWYHPNGFYDDLDVHAQALEILKD 391
+ K + + D+ V E ++D
Sbjct: 187 LRNMLKDSHLDPELFHDIQVSYFCAEDVRD 216
Score = 50.0 bits (119), Expect = 6e-07
Identities = 21/153 (13%), Positives = 46/153 (30%), Gaps = 29/153 (18%)
Query: 56 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIK 115
E K ++D+G G G T +A + ++IG + +++ A + +
Sbjct: 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTY---KNVS 92
Query: 116 FVLGDG------RKGYLDEAPYDIIHVGGSIEDI--------------PEGV----RFGH 151
F + +D+ D+I +G +
Sbjct: 93 FKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAIWGYAD 152
Query: 152 IASPKVESVMRSIDRRRFIERPIMNNPYWDIPQ 184
P + + ++ + PYW+ P
Sbjct: 153 PIFPDYPEFDDLMIEVPYGKQGL--GPYWEQPG 183
Score = 47.3 bits (112), Expect = 4e-06
Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 383 AQALEILKDYL-KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMH 441
+ +++ +Y ++D+G G G T MA + P ++ + ++ A
Sbjct: 23 SDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKE 82
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 64.4 bits (156), Expect = 1e-11
Identities = 32/195 (16%), Positives = 58/195 (29%), Gaps = 35/195 (17%)
Query: 201 ALEILKDYLKPGAKVLDIGSGSGYLTA-CMAHMVGPTGKVYAVEHIEDLVAQANKSMHTY 259
E + G + + IG G LT ++H+ G +V VE D+ + K
Sbjct: 112 KNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYG--MRVNVVEIEPDIAELSRK----- 164
Query: 260 YPNLMEGG--RVQFVDGDGREGHAAEGPYDVIYVGGAV---HHYPFKLMDQLKPGGVMWF 314
+ G V + GD +DV+ V + + + +
Sbjct: 165 --VIEGLGVDGVNVITGDETV--IDGLEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIY 220
Query: 315 TIGNA----------EEMLKNNRRTES--------NLAVVKAHKKDHGEWEEEFMGRLWR 356
++ + RR N +V+ D GE + G+
Sbjct: 221 RTYTGMRAILYAPVSDDDITGFRRAGVVLPSGKVNNTSVLVFKCPDKGELNSKLEGKPIP 280
Query: 357 LPALASVEEQKYWYH 371
P L + +H
Sbjct: 281 NPLLGLDSTRTGHHH 295
Score = 59.8 bits (144), Expect = 4e-10
Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 11/120 (9%)
Query: 53 ELTEGKKVLDIGSGNGYFTA-LLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKD 111
G++ + IG G T LL+ G +V +E P + + + + +
Sbjct: 119 RFRRGERAVFIGGGPLPLTGILLSHVYG--MRVNVVEIEPDIAELSRKVIEGLGVD---- 172
Query: 112 GRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEGVR-FGHIASPKVESVMRSIDRRRFI 170
+ + GD +D +D++ V E R + + R+ R I
Sbjct: 173 -GVNVITGDETV--IDGLEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTYTGMRAI 229
Score = 49.4 bits (117), Expect = 1e-06
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 366 QKYWYHPNGFYDDLDVHAQALEILKDYLKPGAKVLDIGSGSGYLTA-CMAHMVGPTGKVY 424
+ ++++P Y +L E + G + + IG G LT ++H+ G +V
Sbjct: 99 RSFYFYPR--YLEL----LKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYG--MRVN 150
Query: 425 AVEHIEDLVAQANK 438
VE D+ + K
Sbjct: 151 VVEIEPDIAELSRK 164
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann
superfamily, S-adenosyl-L-M (SAM) binding, nucleolus;
HET: SAM; 1.73A {Aeropyrum pernix}
Length = 233
Score = 62.8 bits (152), Expect = 2e-11
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 15/129 (11%)
Query: 196 KVHAQALEILKD-YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 254
K+ A L+ L + +K G ++L +G SG + M+ ++GP G++Y VE ++
Sbjct: 61 KLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDL-L 119
Query: 255 SMHTYYPNLMEGGRVQFVDGDGREGHAAE---GPYDVIYVGGAVHHYPFKLMDQ----LK 307
++ N + + GD R D +Y A ++ L+
Sbjct: 120 TVVRDRRN------IFPILGDARFPEKYRHLVEGVDGLYADVAQPEQAAIVVRNARFFLR 173
Query: 308 PGGVMWFTI 316
GG M I
Sbjct: 174 DGGYMLMAI 182
Score = 55.9 bits (134), Expect = 5e-09
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 392 YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLM 448
+K G ++L +G SG + M+ ++GP G++Y VE ++ ++ N+
Sbjct: 74 PVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDL-LTVVRDRRNIF 129
Score = 42.4 bits (99), Expect = 1e-04
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 39 SKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRAT 98
SK A++ + + EG ++L +G +G + ++ +G G++ G+E P++++
Sbjct: 60 SKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLL 119
Query: 99 HNVISGNPEFVKDGRIKFVLGDGRK 123
V I +LGD R
Sbjct: 120 TVVRDRR-------NIFPILGDARF 137
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 62.0 bits (151), Expect = 2e-11
Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 16/121 (13%)
Query: 197 VHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVA--QANK 254
V + + + +D+G G+G +T +A +VYA++ + ++ + N
Sbjct: 21 VRCLIMCLAE--PGKNDVAVDVGCGTGGVTLELAG---RVRRVYAIDRNPEAISTTEMNL 75
Query: 255 SMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPF---KLMDQLKPGGV 311
H N V ++GD E D+ VGG+ + D+LKPGG
Sbjct: 76 QRHGLGDN------VTLMEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGR 129
Query: 312 M 312
+
Sbjct: 130 I 130
Score = 49.7 bits (119), Expect = 4e-07
Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 9/102 (8%)
Query: 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS 103
+++ E + +D+G G G T LA G+ +V I+ P+ + N+
Sbjct: 23 CLIMCLA--EPGKNDVAVDVGCGTGGVTLELA---GRVRRVYAIDRNPEAISTTEMNLQ- 76
Query: 104 GNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 145
+ + GD + DI VGGS ++ E
Sbjct: 77 ---RHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQE 115
Score = 47.0 bits (112), Expect = 3e-06
Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 380 DVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVA--QAN 437
+V + + + +D+G G+G +T +A +VYA++ + ++ + N
Sbjct: 20 EVRCLIMCLAE--PGKNDVAVDVGCGTGGVTLELAG---RVRRVYAIDRNPEAISTTEMN 74
Query: 438 KSMHTYYPNL 447
H N+
Sbjct: 75 LQRHGLGDNV 84
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 62.2 bits (151), Expect = 3e-11
Identities = 32/173 (18%), Positives = 57/173 (32%), Gaps = 17/173 (9%)
Query: 189 GSVMSSPKVHAQALEILKDYLK--PGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIE 246
+V ++ Q + + LK +V+D+G G G L + ++ V+
Sbjct: 5 AAVEKPISLNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKD-SFFEQITGVDVSY 63
Query: 247 DLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPF------ 300
+ A + + + R+Q + G YD V + H
Sbjct: 64 RSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAF 123
Query: 301 --KLMDQLKPGGVMWFTIGNAEEMLKNNRRTESNLAVVKAHKKDHGEWE-EEF 350
L + +P V+ T N E N + + A HK EW +F
Sbjct: 124 ERVLFEFAQPKIVI-VTTPNIE----YNVKFANLPAGKLRHKDHRFEWTRSQF 171
Score = 44.9 bits (106), Expect = 2e-05
Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 112
+ + ++V+D+G G G +L ++ G++ + ++ A + +
Sbjct: 26 KQSNARRVIDLGCGQGNLLKILLKD-SFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWE 84
Query: 113 RIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 145
R++ + G YD V IE +
Sbjct: 85 RLQLIQGALTYQDKRFHGYDAATVIEVIEHLDL 117
Score = 40.7 bits (95), Expect = 4e-04
Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 374 GFYDDLDVHAQALEILKDYLK--PGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIED 431
+ ++ Q + + LK +V+D+G G G L + ++ V+
Sbjct: 6 AVEKPISLNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKD-SFFEQITGVDVSYR 64
Query: 432 LVAQANKSMHTYYPNLMEGGRVQF 455
+ A + + + R+Q
Sbjct: 65 SLEIAQERLDRLRLPRNQWERLQL 88
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 63.0 bits (153), Expect = 3e-11
Identities = 32/161 (19%), Positives = 60/161 (37%), Gaps = 18/161 (11%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGG- 267
PGAKVL+ G G G T +A P ++ +++ + + +A + N + G
Sbjct: 35 YPPGAKVLEAGCGIGAQTVILAKN-NPDAEITSIDISPESLEKARE-------NTEKNGI 86
Query: 268 -RVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFK------LMDQLKPGGVMWFTIGNAE 320
V+F+ + + +D I+V + H L LKPGG + G+
Sbjct: 87 KNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHG 146
Query: 321 EMLKNNRRTESNLAVVKAHKKDHGEWEEEFMGRLWRLPALA 361
+ ++ A + +GR ++ L
Sbjct: 147 SCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGR--QIYPLL 185
Score = 51.8 bits (124), Expect = 1e-07
Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 54 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR 113
G KVL+ G G G T +LA ++ I+ P+ +++A N +
Sbjct: 35 YPPGAKVLEAGCGIGAQTVILA-KNNPDAEITSIDISPESLEKARENTEKNGIK-----N 88
Query: 114 IKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 145
+KF+ + +++ +D I V +E +
Sbjct: 89 VKFLQANIFSLPFEDSSFDHIFVCFVLEHLQS 120
Score = 50.7 bits (121), Expect = 3e-07
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
PGAKVL+ G G G T +A P ++ +++ + + +A +
Sbjct: 35 YPPGAKVLEAGCGIGAQTVILAKN-NPDAEITSIDISPESLEKARE 79
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 62.5 bits (152), Expect = 5e-11
Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 20/116 (17%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGR 268
+PG +LD+G G+G LT +A +V ++ ++ +A +
Sbjct: 55 PQPGEFILDLGCGTGQLTEKIAQ---SGAEVLGTDNAATMIEKARQ----------NYPH 101
Query: 269 VQFVDGDGREGHAAEGPYDVIYVGGAVHHYP------FKLMDQLKPGGVMWFTIGN 318
+ F D R + P D ++ +H + LK GG G
Sbjct: 102 LHFDVADARN-FRVDKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGG 156
Score = 45.9 bits (109), Expect = 1e-05
Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 15/110 (13%)
Query: 37 KFSKFQQAMVLDDLSE-ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQ 95
F D L G+ +LD+G G G T +A +V+G ++ +++
Sbjct: 37 DKHSFVWQYGEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQ---SGAEVLGTDNAATMIE 93
Query: 96 RATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 145
+A + F + D R +D+ P D + + + E
Sbjct: 94 KARQ----------NYPHLHFDVADARNFRVDK-PLDAVFSNAMLHWVKE 132
Score = 37.8 bits (88), Expect = 0.005
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQA 436
+PG +LD+G G+G LT +A +V ++ ++ +A
Sbjct: 55 PQPGEFILDLGCGTGQLTEKIAQ---SGAEVLGTDNAATMIEKA 95
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 61.0 bits (148), Expect = 7e-11
Identities = 38/185 (20%), Positives = 63/185 (34%), Gaps = 29/185 (15%)
Query: 198 HAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMH 257
+ L L GAK+L++G G+GY M G V A + +L A+A++
Sbjct: 30 RSATLTKFLGELPAGAKILELGCGAGYQAEAMLAA-GF--DVDATDGSPELAAEASR--- 83
Query: 258 TYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPF--------KLMDQLKPG 309
+ F D A YD ++ + H P + LKPG
Sbjct: 84 -RLGR--PVRTMLFHQLD------AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPG 134
Query: 310 GVMWFTI--GNAEEMLKNNRR-TESNLAVVKAHKKDHGEWEEEFMGRLWRLPALASVEEQ 366
G+ + + G E K R + ++A + G W + +E
Sbjct: 135 GLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASV---AVESSEGKGFDQEL 191
Query: 367 KYWYH 371
+ H
Sbjct: 192 AQFLH 196
Score = 46.0 bits (109), Expect = 8e-06
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 376 YDDLDVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQ 435
Y + + L L GAK+L++G G+GY M G V A + +L A+
Sbjct: 24 YAERQPRSATLTKFLGELPAGAKILELGCGAGYQAEAMLAA-GF--DVDATDGSPELAAE 80
Query: 436 ANK 438
A++
Sbjct: 81 ASR 83
Score = 39.5 bits (92), Expect = 0.001
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 47 LDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRA 97
L EL G K+L++G G GY + G V + P+L A
Sbjct: 34 LTKFLGELPAGAKILELGCGAGYQAEAML----AAGFDVDATDGSPELAAEA 81
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
transferase; 1.90A {Geobacter sulfurreducens pca}
Length = 210
Score = 60.7 bits (148), Expect = 9e-11
Identities = 22/128 (17%), Positives = 47/128 (36%), Gaps = 14/128 (10%)
Query: 191 VMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVA 250
+ + + L +L +P V+ G G G + A + + +V ++ D V
Sbjct: 37 IPIVDRQTGRLLYLLARIKQP-QLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVE 95
Query: 251 QANKSMHTYYPNLMEGG---RVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPF---KLMD 304
A + L + G RV+ GD A + D++++ V + ++
Sbjct: 96 HARR-------MLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDCDVFNGADVLERMNR 148
Query: 305 QLKPGGVM 312
L ++
Sbjct: 149 CLAKNALL 156
Score = 42.2 bits (100), Expect = 1e-04
Identities = 21/149 (14%), Positives = 43/149 (28%), Gaps = 36/149 (24%)
Query: 58 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG---RI 114
+ V+ G G G + A + + +V+ I+ V+ A +G R+
Sbjct: 58 QLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRM-------LHDNGLIDRV 110
Query: 115 KFVLGDGRKGYLDEAPYDII--------------------HVGGSIEDIPEGV-RFGHIA 153
+ +GD + DI+ + I R G +A
Sbjct: 111 ELQVGDPLGIAAGQRDIDILFMDCDVFNGADVLERMNRCLAKNALL--IAVNALRRGSVA 168
Query: 154 SPKVESVMRSIDRRRFIERPIMNNPYWDI 182
+ ++ R F + +
Sbjct: 169 ESHEDPETAAL--REFNHH-LSRRRDFFT 194
Score = 39.1 bits (92), Expect = 0.001
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 398 KVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
V+ G G G + A + + +V ++ D V A +
Sbjct: 59 LVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARR 99
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 61.0 bits (148), Expect = 1e-10
Identities = 29/173 (16%), Positives = 51/173 (29%), Gaps = 27/173 (15%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGR 268
L+ D+G G G T + + ++ +D++ +A
Sbjct: 31 LERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAAD----------RLPN 79
Query: 269 VQFVDGDGREGHAAEGPYDVIYVGGAVHHYP------FKLMDQLKPGGVMWFTIGNAEEM 322
F D D++Y P +LMDQL+ GGV+ + + +
Sbjct: 80 TNFGKADLAT-WKPAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQE 138
Query: 323 LKNNRRTESNLAVVKAHKKDHGEWEEEFMGRLWRLPALASVEEQKYWYHPNGF 375
+ D G W++ F G R L + P
Sbjct: 139 ---------PTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSPKSS 182
Score = 52.2 bits (125), Expect = 1e-07
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 13/100 (13%)
Query: 37 KFSKFQQAMVLDDLSE-ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQ 95
KF + D L++ L D+G G G T LL G + GI+ +++
Sbjct: 13 KFEDERTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGV-NVITGIDSDDDMLE 71
Query: 96 RATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIH 135
+A + F D + D+++
Sbjct: 72 KAAD----------RLPNTNFGKADLAT-WKPAQKADLLY 100
Score = 38.7 bits (90), Expect = 0.003
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
L+ D+G G G T + + ++ +D++ +A
Sbjct: 31 LERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAAD 75
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 60.6 bits (147), Expect = 1e-10
Identities = 32/112 (28%), Positives = 43/112 (38%), Gaps = 17/112 (15%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEG-- 266
+KPG ++LD+GSGSG + A G ++ AQA + G
Sbjct: 34 MKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEE------LGVS 85
Query: 267 GRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPF------KLMDQLKPGGVM 312
RV F+ D + A DV GA L LKPGG+M
Sbjct: 86 ERVHFIHNDAAG-YVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIM 136
Score = 47.5 bits (113), Expect = 3e-06
Identities = 27/128 (21%), Positives = 40/128 (31%), Gaps = 23/128 (17%)
Query: 19 ITNIGYGAHM-QAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWC 77
I I H PF + A + L + G ++LD+GSG+G A
Sbjct: 6 IFTISESEHRIHNPFTEEKY------ATLGRVL--RMKPGTRILDLGSGSGEMLCTWARD 57
Query: 78 VGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII--- 134
G GI+ +A R+ F+ D GY+ D+
Sbjct: 58 HG--ITGTGIDMSSLFTAQAKRRAEELGVS----ERVHFIHNDAA-GYVANEKCDVAACV 110
Query: 135 ----HVGG 138
GG
Sbjct: 111 GATWIAGG 118
Score = 37.5 bits (87), Expect = 0.007
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 375 FYDDLDVHAQALEILKDY------LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEH 428
+ +H E +KPG ++LD+GSGSG + A G ++
Sbjct: 10 SESEHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDM 67
Query: 429 IEDLVAQANK 438
AQA +
Sbjct: 68 SSLFTAQAKR 77
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 58.5 bits (142), Expect = 2e-10
Identities = 18/157 (11%), Positives = 46/157 (29%), Gaps = 32/157 (20%)
Query: 203 EILKD-YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYP 261
E L + + ++D G G+G+ + K+Y ++ + + +
Sbjct: 8 EYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKE------- 57
Query: 262 NLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHH--YPFKLMDQ----LKPGGVMWFT 315
+ V + D I + H ++ + LK G +
Sbjct: 58 ------KFDSVITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIII 111
Query: 316 IGNAEEMLKNNRRTESNLAVVKAHKKDHGEWEEEFMG 352
+ R+ + + + + D ++ F
Sbjct: 112 ---------DWRKENTGIGPPLSIRMDEKDYMGWFSN 139
Score = 47.3 bits (113), Expect = 1e-06
Identities = 8/53 (15%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 387 EILKD-YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
E L + + ++D G G+G+ + K+Y ++ + + +
Sbjct: 8 EYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKE 57
Score = 47.3 bits (113), Expect = 2e-06
Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 16/92 (17%)
Query: 54 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR 113
+ ++D G GNG++ L K+ I+ ++ +
Sbjct: 15 EGKKGVIVDYGCGNGFYCKYLL---EFATKLYCIDINVIALKEVKE-------------K 58
Query: 114 IKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 145
V+ + + D I S D+ +
Sbjct: 59 FDSVITLSDPKEIPDNSVDFILFANSFHDMDD 90
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 60.2 bits (146), Expect = 2e-10
Identities = 40/167 (23%), Positives = 61/167 (36%), Gaps = 21/167 (12%)
Query: 161 MRSIDRRRFIERPIMNNPYWDIPQSL---GFGSVMSSPKVHAQALEILKD-YLKPGAKVL 216
M I+ + + NN Y D + FG S +IL D L +KVL
Sbjct: 1 MTLIENLNSDKTFLENNQYTDEGVKVYEFIFGENYISSGGLEATKKILSDIELNENSKVL 60
Query: 217 DIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDG 276
DIGSG G + G + ++ ++V AN+ + ++ F D
Sbjct: 61 DIGSGLGGGCMYINEKYGA--HTHGIDICSNIVNMANE-------RVSGNNKIIFEANDI 111
Query: 277 REGHAAEGPYDVIYVGGAVHHYPF----KLMDQ----LKPGGVMWFT 315
E +D+IY A+ KL + LKP G + T
Sbjct: 112 LTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLIT 158
Score = 48.2 bits (115), Expect = 2e-06
Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 20/115 (17%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRATHNVISGNPEFVKD 111
EL E KVLDIGSG G + K G GI+ +V A V +
Sbjct: 52 ELNENSKVLDIGSGLGGGCMYIN---EKYGAHTHGIDICSNIVNMANERVS-------GN 101
Query: 112 GRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEGVRFGHIASPKVESVMRSIDR 166
+I F D E +D+I+ +I ++ + + +
Sbjct: 102 NKIIFEANDILTKEFPENNFDLIYSRDAIL---------ALSLENKNKLFQKCYK 147
Score = 36.3 bits (84), Expect = 0.016
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 361 ASVEEQKYWYHPNGFYDDL----DVHAQALE-----ILKDYLKPGAKVLDIGSGSGYLTA 411
+E +Y Y+ + + + LE + L +KVLDIGSG G
Sbjct: 12 TFLENNQYTDEGVKVYEFIFGENYISSGGLEATKKILSDIELNENSKVLDIGSGLGGGCM 71
Query: 412 CMAHMVGPTGKVYAVEHIEDLVAQANK 438
+ G + ++ ++V AN+
Sbjct: 72 YINEKYGA--HTHGIDICSNIVNMANE 96
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 60.0 bits (145), Expect = 3e-10
Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 18/116 (15%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHT------YYPN 262
+KPG K+L+IG G G L+A +A VG +G V + D+ + + T +
Sbjct: 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGI----DIASPDYGAPLTLGQAWNHLLA 96
Query: 263 LMEGGRVQFVDGDGREGHA---AEGPYDVIYVGGAVHHYP-----FKLMDQLKPGG 310
G R+ A+ +D + + ++ ++ L +
Sbjct: 97 GPLGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVC 152
Score = 52.0 bits (124), Expect = 1e-07
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHT 442
+KPG K+L+IG G G L+A +A VG +G V + D+ + + T
Sbjct: 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGI----DIASPDYGAPLT 86
Score = 45.8 bits (108), Expect = 2e-05
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGI------EHIPQLVQRATHNVISGNP 106
++ G+K+L+IG G G +A+LA VG +G V GI P + +A +++++G
Sbjct: 40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAG-- 97
Query: 107 EFVKDGRIKFVLGDGRKGYLDEAP 130
R+ L
Sbjct: 98 --PLGDRLTVHFNTNLSDDLGPIA 119
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 59.3 bits (143), Expect = 4e-10
Identities = 23/151 (15%), Positives = 47/151 (31%), Gaps = 24/151 (15%)
Query: 179 YWD-IPQSL-----GFGSVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHM 232
YW +P ++ G V + I ++ LD G+G G +T +
Sbjct: 56 YWRTVPATVSGVLGGMDHV-HDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTK 114
Query: 233 VGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVG 292
+ +E ++ ++ +A + L +F+ YD+I +
Sbjct: 115 LY--ATTDLLEPVKHMLEEAKR-------ELAGMPVGKFILASMETATLPPNTYDLIVIQ 165
Query: 293 GAVHHYP--------FKLMDQLKPGGVMWFT 315
+ L P G ++F
Sbjct: 166 WTAIYLTDADFVKFFKHCQQALTPNGYIFFK 196
Score = 40.8 bits (95), Expect = 5e-04
Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 18/110 (16%)
Query: 57 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKF 116
+ LD G+G G T L + +E + +++ A E KF
Sbjct: 94 TSRALDCGAGIGRITKNLLTKLYA--TTDLLEPVKHMLEEAKR-------ELAGMPVGKF 144
Query: 117 VLGDGRKGYLDEAPYDIIHVGGSIEDIPEGVRFGHIASPKVESVMRSIDR 166
+L L YD+I + + ++ + +
Sbjct: 145 ILASMETATLPPNTYDLIVIQWT---------AIYLTDADFVKFFKHCQQ 185
Score = 34.3 bits (78), Expect = 0.073
Identities = 19/133 (14%), Positives = 43/133 (32%), Gaps = 29/133 (21%)
Query: 364 EEQKYWYHPNGFYD----------DLDVHAQALEILKDYLKPGAKVLDIGSGSGYLTACM 413
+ +YW D+D+ I ++ LD G+G G +T +
Sbjct: 52 KALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNL 111
Query: 414 AHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFTEMAEKVMQLRVHMMSFT 473
+ +E ++ ++ +A + L +F + M + T
Sbjct: 112 LTKLY--ATTDLLEPVKHMLEEAKR-------ELAGMPVGKFILAS---------METAT 153
Query: 474 LEEQSI-IILSSF 485
L + +I+ +
Sbjct: 154 LPPNTYDLIVIQW 166
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.4 bits (148), Expect = 5e-10
Identities = 54/381 (14%), Positives = 102/381 (26%), Gaps = 131/381 (34%)
Query: 106 PEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGS-----------IEDIPEGV--RF--- 149
FV + K V D K L + D I + + E + +F
Sbjct: 27 DAFVDNFDCKDVQ-DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE 85
Query: 150 ------GHIASP-KVESVMRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQAL 202
+ SP K E S+ R +IE+ + ++ Q +V S + + +
Sbjct: 86 VLRINYKFLMSPIKTEQRQPSMMTRMYIEQ---RDRLYNDNQVFAKYNV-SRLQPYLKLR 141
Query: 203 EILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPN 262
+ L + L+P VL G ++G +GK + S
Sbjct: 142 QALLE-LRPAKNVLIDG------------VLG-SGK--TW-----VALDVCLS------- 173
Query: 263 LMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQLKPGGVMWFTIGNAE-- 320
+K+ ++ + W + N
Sbjct: 174 -------------------------------------YKVQCKM-DFKIFWLNLKNCNSP 195
Query: 321 ----EMLKN-NRRTESNLAVVKAHK---KDHGEWEEEFMGRLWRLPA-------LASVEE 365
EML+ + + N H K + + RL + L +V+
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 366 QKYWYHPNGFYDDLDVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYA 425
K W + ++ + L + +V D S + + H
Sbjct: 256 AKAW-------NAFNLSCKILLTTRF-----KQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 426 VE--------HIEDLVAQANK 438
+DL +
Sbjct: 304 KSLLLKYLDCRPQDLPREVLT 324
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 58.4 bits (141), Expect = 5e-10
Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 22/126 (17%)
Query: 198 HAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMH 257
ALE L+ VL++ SG+GY T ++ + +V A++ +++A+A +
Sbjct: 34 APAALERLRA-GNIRGDVLELASGTGYWTRHLSGLA---DRVTALDGSAEMIAEAGRHG- 88
Query: 258 TYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQ--------LKPG 309
V+F D + + +D ++ + H P + + PG
Sbjct: 89 --------LDNVEFRQQDLFD-WTPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPG 139
Query: 310 GVMWFT 315
GV+ F
Sbjct: 140 GVVEFV 145
Score = 39.5 bits (92), Expect = 0.001
Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 24/115 (20%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 112
VL++ SG GY+T L+ G +V ++ +++ A + +
Sbjct: 43 AGNIRGDVLELASGTGYWTRHLS---GLADRVTALDGSAEMIAEAGRHGLD--------- 90
Query: 113 RIKFVLGDGRKGYLD-EAPYDIIHVGGSIEDIPEGVRFGHIASPKVESVMRSIDR 166
++F D + +D + + H+ + E+ S+
Sbjct: 91 NVEFRQQDLFD--WTPDRQWDAVFFAHWLA---------HVPDDRFEAFWESVRS 134
Score = 37.2 bits (86), Expect = 0.007
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 364 EEQKYWYHPNGFYDDL------DVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMV 417
+ Y+ YD ALE L+ VL++ SG+GY T ++ +
Sbjct: 10 SQLSYYRARASEYDATFVPYMDSAAPAALERLRA-GNIRGDVLELASGTGYWTRHLSGLA 68
Query: 418 GPTGKVYAVEHIEDLVAQA 436
+V A++ +++A+A
Sbjct: 69 ---DRVTALDGSAEMIAEA 84
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 58.3 bits (141), Expect = 6e-10
Identities = 35/207 (16%), Positives = 58/207 (28%), Gaps = 36/207 (17%)
Query: 178 PYWDIPQSLGFGSVMSSPKVHAQALEILKD-YLKPGAKVLDIGSGSGYLTACMAHMVGPT 236
+D S G + +V A +IL+D K VL+ G G+G LT +
Sbjct: 14 HTYD---SFVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG--- 67
Query: 237 GKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVH 296
VY +E ++ A + + +GD D I A H
Sbjct: 68 RTVYGIEPSREMRMIAKEKL---------PKEFSITEGDFLS-FEVPTSIDTIVSTYAFH 117
Query: 297 HYP--------FKLMDQLKPGGVMWFTIGNAEEMLKNNRRTESNLAVVKAHKKDHGEWEE 348
H K L GG + F + + +
Sbjct: 118 HLTDDEKNVAIAKYSQLLNKGGKIVFADTIFA-----------DQDAYDKTVEAAKQRGF 166
Query: 349 EFMGRLWRLPALASVEEQKYWYHPNGF 375
+ + + + + NGF
Sbjct: 167 HQLANDLQTEYYTRIPVMQTIFENNGF 193
Score = 39.8 bits (93), Expect = 8e-04
Identities = 16/79 (20%), Positives = 21/79 (26%), Gaps = 13/79 (16%)
Query: 56 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIK 115
VL+ G G G T L V GIE ++ A +
Sbjct: 45 SFGNVLEFGVGTGNLTNKLL---LAGRTVYGIEPSREMRMIAKEKL---------PKEFS 92
Query: 116 FVLGDGRKGYLDEAPYDII 134
GD + D I
Sbjct: 93 ITEGDFLSFEVPT-SIDTI 110
Score = 37.5 bits (87), Expect = 0.005
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 380 DVHAQALEILKD-YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
+V A +IL+D K VL+ G G+G LT + VY +E ++ A +
Sbjct: 29 EVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG---RTVYGIEPSREMRMIAKE 85
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 59.1 bits (143), Expect = 7e-10
Identities = 34/194 (17%), Positives = 58/194 (29%), Gaps = 33/194 (17%)
Query: 179 YWDIPQSLGFGSVMSSPKVHAQALEILKDY-LKPGAKVLDIGSGSGYLTACMAHMVGPTG 237
+ P S A E+ L+ AK LD+G+G G + G
Sbjct: 49 LYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV-- 106
Query: 238 KVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHH 297
+ + + + + L + G E + YD I+ A H
Sbjct: 107 SIDCLNIAPVQNKRNEE--YNNQAGL--ADNITVKYGSFLEIPCEDNSYDFIWSQDAFLH 162
Query: 298 YPFK------LMDQLKPGGVMWFTIGNAEEMLKNNRRTESNLAVVKAHKKDHGEWEEEFM 351
P K LKP GVM T + +K + +S++ +
Sbjct: 163 SPDKLKVFQECARVLKPRGVMAIT-----DPMKEDGIDKSSIQ----------PILDR-- 205
Query: 352 GRLWRLPALASVEE 365
+L + S+
Sbjct: 206 ---IKLHDMGSLGL 216
Score = 47.9 bits (114), Expect = 3e-06
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 6/101 (5%)
Query: 49 DLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEF 108
++ L K LD+G+G G L G + + P +R N +
Sbjct: 75 AMTGVLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEY----NNQA 128
Query: 109 VKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEGVRF 149
I G + ++ YD I + P+ ++
Sbjct: 129 GLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKV 169
Score = 35.2 bits (81), Expect = 0.036
Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 8/77 (10%)
Query: 368 YWYHPNGFYDDLDVHAQALEILKDYL------KPGAKVLDIGSGSGYLTACMAHMVGPTG 421
+ P + + + E L L + AK LD+G+G G + G
Sbjct: 49 LYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV-- 106
Query: 422 KVYAVEHIEDLVAQANK 438
+ + + +
Sbjct: 107 SIDCLNIAPVQNKRNEE 123
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 57.9 bits (140), Expect = 8e-10
Identities = 29/215 (13%), Positives = 74/215 (34%), Gaps = 40/215 (18%)
Query: 176 NNPYWDIPQSLGFG---SVMSSPKVHAQALEILKDYL--KPGAKVLDIGSGSGYLTACMA 230
+N Y + + L + +P + ++L+ L + L+IG +G T +A
Sbjct: 11 DNTYQSLERELANDDPWRLDDNPFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLA 70
Query: 231 HMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIY 290
++ ++ + + +A + + + D + +D+I
Sbjct: 71 PHC---KRLTVIDVMPRAIGRACQ-------RTKRWSHISWAATDI-LQFSTAELFDLIV 119
Query: 291 VGGAVHHYPF---------KLMDQLKPGGVM------------WFTIGNAEEMLKNNRRT 329
V +++ ++ L PGG + W + AE ++
Sbjct: 120 VAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRWGHVAGAETVITILTEA 179
Query: 330 ESNLAVVKAHKKDHGEWEEEFMGRLWRLPALASVE 364
+ + V+ + +E+ + +R P +S+
Sbjct: 180 LTEVERVQCQGQSA---DEDCLLARFRNPERSSIR 211
Score = 36.7 bits (85), Expect = 0.009
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 11/78 (14%)
Query: 57 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKF 116
L+IG G FT LA ++ I+ +P+ + RA + I +
Sbjct: 52 VSNGLEIGCAAGAFTEKLA---PHCKRLTVIDVMPRAIGRACQRT-------KRWSHISW 101
Query: 117 VLGDGRKGYLDEAPYDII 134
D + E +D+I
Sbjct: 102 AATDILQFSTAE-LFDLI 118
Score = 34.0 bits (78), Expect = 0.060
Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 11/68 (16%)
Query: 369 WYHPNGFYDDLDVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEH 428
+ L +L + L+IG +G T +A ++ ++
Sbjct: 33 PFERERHTQLL---RLSLS-----SGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDV 81
Query: 429 IEDLVAQA 436
+ + +A
Sbjct: 82 MPRAIGRA 89
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 58.2 bits (141), Expect = 8e-10
Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 19/127 (14%)
Query: 198 HAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMH 257
+A +LK K +VLDIG SG L A + G +V +E + QA +
Sbjct: 19 NAVNPNLLKHIKKEWKEVLDIGCSSGALGAAIKEN-GT--RVSGIEAFPEAAEQAKEK-- 73
Query: 258 TYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHH--YPFKLMDQ----LKPGGV 311
V D + + E +D + G + H P+ ++++ +K GV
Sbjct: 74 --------LDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGV 125
Query: 312 MWFTIGN 318
+ +I N
Sbjct: 126 ILASIPN 132
Score = 41.6 bits (98), Expect = 2e-04
Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 30/114 (26%)
Query: 56 EGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRATHNVISGNPEFVKDGRI 114
E K+VLDIG +G A + + G +V GIE P+ ++A K+
Sbjct: 32 EWKEVLDIGCSSGALGAAIK----ENGTRVSGIEAFPEAAEQA------------KEKLD 75
Query: 115 KFVLGDGRKGYLDEAP--YDIIHVGGSIEDIPEGVRFGHIASPKVESVMRSIDR 166
VLGD + +D + G +E H+ P +V+ +
Sbjct: 76 HVVLGDIETMDMPYEEEQFDCVIFGDVLE---------HLFDP--WAVIEKVKP 118
Score = 41.3 bits (97), Expect = 3e-04
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 382 HAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
+A +LK K +VLDIG SG L A + G +V +E + QA +
Sbjct: 19 NAVNPNLLKHIKKEWKEVLDIGCSSGALGAAIKEN-GT--RVSGIEAFPEAAEQAKE 72
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 59.9 bits (144), Expect = 1e-09
Identities = 32/230 (13%), Positives = 68/230 (29%), Gaps = 21/230 (9%)
Query: 108 FVKDGRIKFVLGDGR-KGYLDEAPYDII-----HVGGSIEDIPEGVRFGHIASPKVESVM 161
+ I+F +G G +++ + + D E + +
Sbjct: 613 IESNEEIEFEVGTGSMNPHIESEVTQMTVGEYASFKMTPPDAAEALILA--VGSDTVRIR 670
Query: 162 RSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKDYLK--PGAKVLDIG 219
+ R + I+ P + P + Q +E +++ + ++D G
Sbjct: 671 SLLSERPCLNYNILLLGVKG-PSEERMEAAFFKPPLSKQRVEYALKHIRESSASTLVDFG 729
Query: 220 SGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEG-GRVQFVDGDGRE 278
GSG L + + V+ +A+A K +H DG E
Sbjct: 730 CGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILE 789
Query: 279 GHAAEGPYDVIYVGGAVHHYPF--------KLMDQLKPGGVMWFTIGNAE 320
+ D+ + H K++ P ++ + N E
Sbjct: 790 FDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLI-VSTPNYE 838
Score = 41.0 bits (95), Expect = 0.001
Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 1/91 (1%)
Query: 56 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS-GNPEFVKDGRI 114
++D G G+G L +IG++ P+ + RA + N E
Sbjct: 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSA 780
Query: 115 KFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 145
G + DI IE + E
Sbjct: 781 TLYDGSILEFDSRLHDVDIGTCLEVIEHMEE 811
Score = 39.4 bits (91), Expect = 0.003
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 381 VHAQALEILKDYLK--PGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
+ Q +E +++ + ++D G GSG L + + V+ +A+A K
Sbjct: 705 LSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAK 764
Query: 439 SMHTYY 444
+H
Sbjct: 765 MLHVKL 770
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 58.0 bits (140), Expect = 1e-09
Identities = 36/237 (15%), Positives = 65/237 (27%), Gaps = 52/237 (21%)
Query: 193 SSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQA 252
++ + +L L G+ + DIG+G+G + +A+ VYAVE + QA
Sbjct: 18 PDIRIVNAIINLLN--LPKGSVIADIGAGTGGYSVALANQG---LFVYAVEPSIVMRQQA 72
Query: 253 NKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQ------- 305
+V++ G + D + A+HH+
Sbjct: 73 VVH-----------PQVEWFTGYAENLALPDKSVDGVISILAIHHFS----HLEKSFQEM 117
Query: 306 ---LKPGGVMWFTIGNAEEMLKNNRRTESNLAVVKAHKKDHGEWEEEFMGRLWRL----- 357
++ G ++ T L E R
Sbjct: 118 QRIIRDGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQINLLQENTKRRVEAIP 177
Query: 358 ----PALASVEEQKYWYHPNGFYDDL-------------DVHAQALEILKDYLKPGA 397
L+ + W P + D+ + LE+L L G
Sbjct: 178 FLLPHDLSDLFAAAAWRRPELYLKAEVRAGISSFALANQDLVEKGLELLTADLNNGE 234
Score = 43.3 bits (102), Expect = 8e-05
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 14/69 (20%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 112
L +G + DIG+G G ++ LA + V +E + Q+A +
Sbjct: 31 NLPKGSVIADIGAGTGGYSVALA---NQGLFVYAVEPSIVMRQQAVVH-----------P 76
Query: 113 RIKFVLGDG 121
++++ G
Sbjct: 77 QVEWFTGYA 85
Score = 40.6 bits (95), Expect = 6e-04
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 374 GFYDDLDVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLV 433
D+ + + +L L G+ + DIG+G+G + +A+ VYAVE +
Sbjct: 15 TRVPDIRIVNAIINLLN--LPKGSVIADIGAGTGGYSVALANQG---LFVYAVEPSIVMR 69
Query: 434 AQA 436
QA
Sbjct: 70 QQA 72
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 57.2 bits (138), Expect = 1e-09
Identities = 27/127 (21%), Positives = 44/127 (34%), Gaps = 18/127 (14%)
Query: 202 LEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYP 261
LE++ ++ GA +LD+GS YL G A E +E A K++ +
Sbjct: 6 LELVASFVSQGAILLDVGSDHAYL-PIELVERGQIKSAIAGEVVEGPYQSAVKNVEAH-- 62
Query: 262 NLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQLKPGGVMWFTIGNAEE 321
L ++Q +G VI + G M G ++ +
Sbjct: 63 GL--KEKIQVRLANGLAAFEETDQVSVITIAG---------MG----GRLIARILEEGLG 107
Query: 322 MLKNNRR 328
L N R
Sbjct: 108 KLANVER 114
Score = 52.2 bits (125), Expect = 7e-08
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 47 LDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNP 106
L+ ++ +++G +LD+GS + Y L G+ I E + Q A NV +
Sbjct: 6 LELVASFVSQGAILLDVGSDHAYLPIELV-ERGQIKSAIAGEVVEGPYQSAVKNVEAHGL 64
Query: 107 EFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGG 138
+ +I+ L +G + + +I + G
Sbjct: 65 K----EKIQVRLANGLAAFEETDQVSVITIAG 92
Score = 48.3 bits (115), Expect = 1e-06
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 386 LEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
LE++ ++ GA +LD+GS YL G A E +E A K
Sbjct: 6 LELVASFVSQGAILLDVGSDHAYL-PIELVERGQIKSAIAGEVVEGPYQSAVK 57
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 57.4 bits (138), Expect = 1e-09
Identities = 29/201 (14%), Positives = 55/201 (27%), Gaps = 25/201 (12%)
Query: 190 SVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLV 249
V+S P L L P +VL+ G G G A + A + +L+
Sbjct: 27 RVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQA---ARWAAYDFSPELL 83
Query: 250 AQANKSMHTYYPNLMEGGRVQFVDGDGREGH--AAEGPYDVIYVGGAVHHYPFKLMDQLK 307
A + + +G+ P+ +I +L +
Sbjct: 84 KLARAN----------APHADVYEWNGKGELPAGLGAPFGLIVSRRGPTSVILRLPELAA 133
Query: 308 PGGVMWFTIGNAEEMLKNNRRTESNLAVVKAHKKDHGEWEEEFMGRLWRLPALASVEEQK 367
P +G + + R + + A E+ + L P + +
Sbjct: 134 PDAHF-LYVGPRLNVPEVPERLAAVGWDIVA---------EDHVSVLAHAPTWEDWQMRG 183
Query: 368 YWYHPNGFYDDLDVHAQALEI 388
+ D D A +
Sbjct: 184 EFMGKLARRADWDAEATVRGM 204
Score = 45.4 bits (107), Expect = 1e-05
Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 3/71 (4%)
Query: 368 YWYHPNGFYDDLDVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 427
Y + D L L P +VL+ G G G A + A +
Sbjct: 21 YRHPWARVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQA---ARWAAYD 77
Query: 428 HIEDLVAQANK 438
+L+ A
Sbjct: 78 FSPELLKLARA 88
Score = 44.3 bits (104), Expect = 3e-05
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 15/95 (15%)
Query: 43 QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVI 102
+ LS LT +VL+ G G+G A + + + P+L++ A N
Sbjct: 35 ELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFG---PQAARWAAYDFSPELLKLARANA- 90
Query: 103 SGNPEFVKDGRIKFVLGDGRKG--YLDEAPYDIIH 135
+G+ AP+ +I
Sbjct: 91 ---------PHADVYEWNGKGELPAGLGAPFGLIV 116
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 57.5 bits (139), Expect = 2e-09
Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 18/146 (12%)
Query: 179 YWDIPQSLGFGSVMSSPKVHAQALEILKDY------LKPGAKVLDIGSGSGYLTACMAHM 232
W G+ + A + L D ++ G +VLD+G G G +A
Sbjct: 23 IWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATA 82
Query: 233 VGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVG 292
+V + V QAN L RV F D + + +D ++
Sbjct: 83 RD--VRVTGISISRPQVNQANA--RATAAGL--ANRVTFSYADAMDLPFEDASFDAVWAL 136
Query: 293 GAVHHYPFK------LMDQLKPGGVM 312
++HH P + + L+PGG +
Sbjct: 137 ESLHHMPDRGRALREMARVLRPGGTV 162
Score = 47.9 bits (114), Expect = 3e-06
Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 11/132 (8%)
Query: 23 GYGAHMQ-APFQDNTKFSKFQQAMV--LDDLSE--ELTEGKKVLDIGSGNGYFTALLAWC 77
+G ++ ++D A D++ ++ G +VLD+G G G LA
Sbjct: 23 IWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATA 82
Query: 78 VGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVG 137
+V GI V +A + R+ F D ++A +D +
Sbjct: 83 RD--VRVTGISISRPQVNQANARATAAGL----ANRVTFSYADAMDLPFEDASFDAVWAL 136
Query: 138 GSIEDIPEGVRF 149
S+ +P+ R
Sbjct: 137 ESLHHMPDRGRA 148
Score = 36.7 bits (85), Expect = 0.011
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 10/57 (17%)
Query: 368 YWYHPNGFYDDLDVHAQALEILKDY------LKPGAKVLDIGSGSGYLTACMAHMVG 418
YW A + L D ++ G +VLD+G G G +A
Sbjct: 32 YWEDAGADVS----VDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARD 84
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 56.1 bits (135), Expect = 3e-09
Identities = 25/127 (19%), Positives = 55/127 (43%), Gaps = 11/127 (8%)
Query: 189 GSVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDL 248
+++ +V A L L+ L+ + DIG+GS ++ ++++ P G+++A+E
Sbjct: 20 KKLITKQEVRAVTLSKLR--LQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQY 76
Query: 249 VAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYP---FKLMDQ 305
+ ++ + V V+ EG D +++GG+ + +
Sbjct: 77 LGFIRDNLKKFV-----ARNVTLVEAFAPEGLDDLPDPDRVFIGGSGGMLEEIIDAVDRR 131
Query: 306 LKPGGVM 312
LK GV+
Sbjct: 132 LKSEGVI 138
Score = 42.6 bits (100), Expect = 1e-04
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 8/102 (7%)
Query: 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS 103
A+ L L L + + DIG+G+ + + + G++ +E PQ + I
Sbjct: 30 AVTLSKL--RLQDDLVMWDIGAGSASVSIEAS-NLMPNGRIFALERNPQYLGF-----IR 81
Query: 104 GNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 145
N + + V +G D D + +GGS + E
Sbjct: 82 DNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGSGGMLEE 123
Score = 38.4 bits (89), Expect = 0.002
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 380 DVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKS 439
+V A L L+ L+ + DIG+GS ++ ++++ P G+++A+E + +
Sbjct: 27 EVRAVTLSKLR--LQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGFIRDN 83
Query: 440 MHTYY 444
+ +
Sbjct: 84 LKKFV 88
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 56.0 bits (135), Expect = 3e-09
Identities = 24/142 (16%), Positives = 51/142 (35%), Gaps = 23/142 (16%)
Query: 188 FGSVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIED 247
G+V+S+ +E +LD+GSG+G T +A + ++ +E
Sbjct: 20 LGTVISAEDPDRVLIEPWAT--GVDGVILDVGSGTGRWTGHLASLG---HQIEGLEPATR 74
Query: 248 LVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPF------- 300
LV A ++ +P+ V F G + + + + ++ H
Sbjct: 75 LVELARQT----HPS------VTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDAL 124
Query: 301 -KLMDQLKPGGVMWFTIGNAEE 321
L ++ GG + + +
Sbjct: 125 VALRMAVEDGGGLLMSFFSGPS 146
Score = 37.9 bits (88), Expect = 0.004
Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 24/111 (21%)
Query: 57 GKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRATHNVISGNPEFVKDGRIK 115
+LD+GSG G +T LA G ++ G+E +LV+ A +
Sbjct: 42 DGVILDVGSGTGRWTGHLA----SLGHQIEGLEPATRLVELARQTH----------PSVT 87
Query: 116 FVLGDGRKGYLDEAPYDIIHVGGSIEDIPEGVRFGHIASPKVESVMRSIDR 166
F G + + S+ H+ ++ + ++
Sbjct: 88 FHHGTITDLSDSPKRWAGLLAWYSLI---------HMGPGELPDALVALRM 129
Score = 33.6 bits (77), Expect = 0.083
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 375 FYDDLDVHAQALEILKDYL-KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLV 433
+ +++ + +LD+GSG+G T +A + ++ +E LV
Sbjct: 20 LGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASLG---HQIEGLEPATRLV 76
Query: 434 AQANK 438
A +
Sbjct: 77 ELARQ 81
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural
genomics, protein structure initiative, pyrococc
furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Length = 230
Score = 56.4 bits (137), Expect = 3e-09
Identities = 43/200 (21%), Positives = 71/200 (35%), Gaps = 50/200 (25%)
Query: 204 ILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIED--LVAQANKSMHTYYP 261
LK +L+ G L+IG+G + A MA KV A E E+ A+ N +
Sbjct: 48 FLKTFLRGGEVALEIGTGHTAMMALMAEKF-FNCKVTATEVDEEFFEYARRNIERN---- 102
Query: 262 NLMEGGRVQFVDGDGREGHAAEGPYDVI-----YV--GGAVHHYP--------------F 300
N R+ +G +G EG +DVI Y
Sbjct: 103 NS--NVRLVKSNGGIIKG-VVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSV 159
Query: 301 KLMDQ----LKPGGVMWFTIGNAE---EMLKNNRRTESNLAVVKAHKKDHGEWEEEFMGR 353
KL+++ L PGG + + + E ++K + + + K + +G
Sbjct: 160 KLLEEAFDHLNPGGKVALYLPDKEKLLNVIKER-----GIKLGYSVKDIKFK-----VGT 209
Query: 354 LWR--LPALASVEEQKYWYH 371
WR L + E + +H
Sbjct: 210 RWRHSLIFFKGISEGHHHHH 229
Score = 40.2 bits (95), Expect = 8e-04
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 12/78 (15%)
Query: 375 FYD-DLDVHAQAL------EIL--KDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYA 425
+ D++ H + L + K +L+ G L+IG+G + A MA KV A
Sbjct: 26 LFGLDIEYHPKGLVTTPISRYIFLKTFLRGGEVALEIGTGHTAMMALMAEKF-FNCKVTA 84
Query: 426 VEHIED--LVAQANKSMH 441
E E+ A+ N +
Sbjct: 85 TEVDEEFFEYARRNIERN 102
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 56.1 bits (135), Expect = 3e-09
Identities = 24/137 (17%), Positives = 45/137 (32%), Gaps = 12/137 (8%)
Query: 194 SPKVHAQALEILKDYLK--PGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQ 251
++ Q L + LK KV+D+G G G L + + ++ V+ ++ +
Sbjct: 10 KLNLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKD-KSFEQITGVDVSYSVLER 68
Query: 252 ANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFK--------LM 303
A + M+ R+ YD V + H L
Sbjct: 69 AKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLF 128
Query: 304 DQLKPGGVMWFTIGNAE 320
+ +P V+ + N E
Sbjct: 129 EFTRPQTVI-VSTPNKE 144
Score = 46.5 bits (110), Expect = 5e-06
Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 10/112 (8%)
Query: 56 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIK 115
KKV+D+G G G +LL ++ G++ +++RA + ++ RI
Sbjct: 29 NAKKVIDLGCGEGNLLSLLLKDKSFE-QITGVDVSYSVLERAKDRLKIDRLPEMQRKRIS 87
Query: 116 FVLGDGRKGYLDEAPYDIIHVGGSIEDIPEGVRFGHIASPKVESVMRSIDRR 167
+ YD V IE H+ ++++ + +
Sbjct: 88 LFQSSLVYRDKRFSGYDAATVIEVIE---------HLDENRLQAFEKVLFEF 130
Score = 36.5 bits (84), Expect = 0.010
Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 381 VHAQALEILKDYLK--PGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
++ Q L + LK KV+D+G G G L + + ++ V+ ++ +A
Sbjct: 13 LNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKD-KSFEQITGVDVSYSVLERAKD 71
Query: 439 SMHTYYPNLMEGGRVQFTE 457
+ M+ R+ +
Sbjct: 72 RLKIDRLPEMQRKRISLFQ 90
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 55.2 bits (133), Expect = 4e-09
Identities = 32/158 (20%), Positives = 50/158 (31%), Gaps = 26/158 (16%)
Query: 192 MSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQ 251
++ V A A+ L KP + DIG GSG + P E E+ +
Sbjct: 8 LTKQHVRALAISALA--PKPHETLWDIGGGSGSIAIEWLRS-TPQTTAVCFEISEERRER 64
Query: 252 ANKSMHTYYPNLMEGGR--VQFVDGDGREG-HAAEGPYDVIYVGGAVHHYPF--KLMDQL 306
N + G V DVI++GG + +L
Sbjct: 65 ILS-------NAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGGGLTAPGVFAAAWKRL 117
Query: 307 KPGGVMWFTIGNAEEMLKNNRRTESNLAVVKAHKKDHG 344
GG + + NA T + ++ A +K G
Sbjct: 118 PVGGRL---VANA--------VTVESEQMLWALRKQFG 144
Score = 44.4 bits (105), Expect = 2e-05
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 380 DVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
V A A+ L KP + DIG GSG + P E E+ +
Sbjct: 12 HVRALAISALA--PKPHETLWDIGGGSGSIAIEWLRS-TPQTTAVCFEISEERRERILS 67
Score = 37.8 bits (88), Expect = 0.002
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Query: 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN 100
A+ + L + + DIG G+G + E + +R N
Sbjct: 15 ALAISAL--APKPHETLWDIGGGSGSIAIEWL-RSTPQTTAVCFEISEERRERILSN 68
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH;
1.37A {Mesembryanthemum crystallinum}
Length = 237
Score = 56.1 bits (136), Expect = 4e-09
Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 15/133 (11%)
Query: 190 SVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLV 249
S MS+ + Q + + + K +++G +GY A + GK+ A++ +
Sbjct: 50 SYMSTSPLAGQLMSFVLKLVNA-KKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAY 108
Query: 250 AQANKSMHTYYPNLMEGGRVQFVDGDGRE-------GHAAEGPYDVIYVGGAVHHYPF-- 300
+ ++ F++ D G +EG YD +V +Y
Sbjct: 109 EIGLP----FIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYH 164
Query: 301 -KLMDQLKPGGVM 312
+LM +K GG++
Sbjct: 165 ERLMKLVKVGGIV 177
Score = 39.2 bits (92), Expect = 0.002
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 398 KVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
K +++G +GY A + GK+ A++ +
Sbjct: 73 KTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLP 113
Score = 38.8 bits (91), Expect = 0.002
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 17/87 (19%)
Query: 58 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG---RI 114
KK +++G GY L A + GK+ I+ + + K G +I
Sbjct: 72 KKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPF-------IRKAGVEHKI 124
Query: 115 KFVLGDG-------RKGYLDEAPYDII 134
F+ D +G E YD
Sbjct: 125 NFIESDAMLALDNLLQGQESEGSYDFG 151
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 54.5 bits (131), Expect = 7e-09
Identities = 25/148 (16%), Positives = 51/148 (34%), Gaps = 29/148 (19%)
Query: 195 PKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 254
+ + + L + L + V+D G+G TA +A G + KVYA + E + + ++
Sbjct: 6 KRPIHMSHDFLAEVLDDESIVVDATMGNGNDTAFLA---GLSKKVYAFDVQEQALGKTSQ 62
Query: 255 SMHTYYPNLMEGGRVQFVDGDGRE------GHAAEGPYDVIYVGGAVHHYPF-------- 300
+ + + +++ Y+ A
Sbjct: 63 RLSDLGIE-----NTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEA 117
Query: 301 --KLMDQLKPGGVMWFTI-----GNAEE 321
K++D+L+ GG + I G E
Sbjct: 118 IEKILDRLEVGGRLAIMIYYGHDGGDME 145
Score = 48.3 bits (115), Expect = 9e-07
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 10/87 (11%)
Query: 50 LSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFV 109
L+E L + V+D GNG TA LA G + KV + Q + + + + E
Sbjct: 16 LAEVLDDESIVVDATMGNGNDTAFLA---GLSKKVYAFDVQEQALGKTSQRLSDLGIE-- 70
Query: 110 KDGRIKFVLGDGR--KGYLDEAPYDII 134
+ +L Y+ E I
Sbjct: 71 ---NTELILDGHENLDHYVREPIRAAI 94
Score = 47.2 bits (112), Expect = 2e-06
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Query: 385 ALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYY 444
+ + L + L + V+D G+G TA +A G + KVYA + E + + ++ +
Sbjct: 12 SHDFLAEVLDDESIVVDATMGNGNDTAFLA---GLSKKVYAFDVQEQALGKTSQRLSDLG 68
Query: 445 PNLMEGGRVQF 455
+
Sbjct: 69 IE-----NTEL 74
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 54.9 bits (132), Expect = 1e-08
Identities = 27/142 (19%), Positives = 54/142 (38%), Gaps = 21/142 (14%)
Query: 191 VMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVA 250
H L++YLK +VLD+G G+G + + +V V+ ++++
Sbjct: 34 TPKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERG---FEVVLVDPSKEMLE 90
Query: 251 QANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYD-VIYVGGAVHHYP-----FKLMD 304
A E G V+ + G ++ V+ +G + + F +
Sbjct: 91 VA-----------REKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIR 139
Query: 305 Q-LKPGGVMWFTIGNAEEMLKN 325
+ L P G++ T+ N L+
Sbjct: 140 RVLVPDGLLIATVDNFYTFLQQ 161
Score = 39.4 bits (92), Expect = 0.001
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 382 HAQALEILKDYLKPGAKVLDIGSGSGYLTACMA 414
H L++YLK +VLD+G G+G + +
Sbjct: 41 HRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQ 73
Score = 37.1 bits (86), Expect = 0.007
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 50 LSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGI----EHIPQLVQRATHNVISGN 105
L E L +VLD+G G G ++ L + +V+ + E + ++ NV+
Sbjct: 48 LEEYLKNPCRVLDLGGGTGKWSLFLQ---ERGFEVVLVDPSKEMLEVAREKGVKNVVEAK 104
Query: 106 PE 107
E
Sbjct: 105 AE 106
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold,
protein-cofactor-substrate complex; HET: SAH FRE; 2.70A
{Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Length = 247
Score = 54.3 bits (131), Expect = 2e-08
Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 15/133 (11%)
Query: 190 SVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLV 249
++M++ Q L +L + ++IG +GY A + GK+ A++ ++
Sbjct: 59 NIMTTSADEGQFLSMLLKLINA-KNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENY 117
Query: 250 AQANKSMHTYYPNLMEGGRVQFVDGDGRE-------GHAAEGPYDVIYVGGAVHHYPF-- 300
++ F +G G YD I+V +Y
Sbjct: 118 ELGLP----VIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYH 173
Query: 301 -KLMDQLKPGGVM 312
+L+D +K GGV+
Sbjct: 174 KRLIDLVKVGGVI 186
Score = 38.9 bits (91), Expect = 0.002
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 398 KVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
++IG +GY A + GK+ A++ ++
Sbjct: 82 NTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLP 122
Score = 38.1 bits (89), Expect = 0.004
Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 17/87 (19%)
Query: 58 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG---RI 114
K ++IG GY A + + GK++ ++ + + K G +I
Sbjct: 81 KNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPV-------IKKAGVDHKI 133
Query: 115 KFVLGDGR-------KGYLDEAPYDII 134
F G K + YD I
Sbjct: 134 DFREGPALPVLDEMIKDEKNHGSYDFI 160
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 54.1 bits (130), Expect = 2e-08
Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 5/92 (5%)
Query: 202 LEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYP 261
LE + Y+ ++ DIGS YL C A A E ++ A K + +
Sbjct: 12 LEKVASYITKNERIADIGSDHAYL-PCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSS-- 68
Query: 262 NLMEGGRVQFVDGDGREGHAAEGPYDVIYVGG 293
L E ++ G+G + D I + G
Sbjct: 69 GLTE--QIDVRKGNGLAVIEKKDAIDTIVIAG 98
Score = 49.5 bits (118), Expect = 7e-07
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 47 LDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNP 106
L+ ++ +T+ +++ DIGS + Y I E + Q A V S
Sbjct: 12 LEKVASYITKNERIADIGSDHAYLPCFAV-KNQTASFAIAGEVVDGPFQSAQKQVRSSGL 70
Query: 107 EFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGG 138
+I G+G + D I + G
Sbjct: 71 T----EQIDVRKGNGLAVIEKKDAIDTIVIAG 98
Score = 47.6 bits (113), Expect = 3e-06
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 386 LEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
LE + Y+ ++ DIGS YL C A A E ++ A K
Sbjct: 12 LEKVASYITKNERIADIGSDHAYL-PCFAVKNQTASFAIAGEVVDGPFQSAQK 63
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 53.3 bits (128), Expect = 2e-08
Identities = 24/128 (18%), Positives = 41/128 (32%), Gaps = 24/128 (18%)
Query: 203 EILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTG-KVYAVEHIEDLVAQANKSMHTYYP 261
++ GAK+LD G G G + ++ G V + L+ A + +P
Sbjct: 38 RLIDAMAPRGAKILDAGCGQGRIGGYLSKQ----GHDVLGTDLDPILIDYAKQD----FP 89
Query: 262 NLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPF---------KLMDQLKPGGVM 312
++V GD +E +D+I G V + + L G
Sbjct: 90 E------ARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRA 143
Query: 313 WFTIGNAE 320
G
Sbjct: 144 VIGFGAGR 151
Score = 44.8 bits (106), Expect = 1e-05
Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 26/127 (20%)
Query: 41 FQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRATH 99
+ +A ++D ++ G K+LD G G G L+ K G V+G + P L+ A
Sbjct: 34 YGEARLIDAMAPR---GAKILDAGCGQGRIGGYLS----KQGHDVLGTDLDPILIDYAKQ 86
Query: 100 NVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEGVRFGHIASPKVES 159
+ PE ++V+GD + E +D+I G++ G +A E
Sbjct: 87 DF----PE------ARWVVGDLSVDQISETDFDLIVSAGNV--------MGFLAEDGREP 128
Query: 160 VMRSIDR 166
+ +I R
Sbjct: 129 ALANIHR 135
Score = 34.4 bits (79), Expect = 0.040
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 369 WYHPNGFYDDLDVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMA 414
W + +D+ A+ ++ + GAK+LD G G G + ++
Sbjct: 23 WRNLAAAGNDIYGEARLIDAM---APRGAKILDAGCGQGRIGGYLS 65
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 53.8 bits (129), Expect = 3e-08
Identities = 22/145 (15%), Positives = 36/145 (24%), Gaps = 24/145 (16%)
Query: 194 SPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTG-KVYAVEHIEDLVAQA 252
S ++ L Y K +VLDIG G G G + V+ ED++
Sbjct: 24 SRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE----GIESIGVDINEDMIKFC 79
Query: 253 NKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPF--------KLMD 304
V D + D + + V H
Sbjct: 80 EG-----------KFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYS 128
Query: 305 QLKPGGVMWFTIGNAEEMLKNNRRT 329
++K + N +
Sbjct: 129 KMKYSSYIVIESPNPTSLYSLINFY 153
Score = 49.1 bits (117), Expect = 8e-07
Identities = 21/137 (15%), Positives = 45/137 (32%), Gaps = 27/137 (19%)
Query: 32 FQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIP 91
F++ + S+ L ++VLDIG G G F L C + + IG++
Sbjct: 17 FEEKFRGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEF---LELCKEEGIESIGVDINE 73
Query: 92 QLVQRAT--HNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEGVRF 149
+++ NV+ + L + D + + +E
Sbjct: 74 DMIKFCEGKFNVVKSDAIEYLKS-------------LPDKYLDGVMISHFVE-------- 112
Query: 150 GHIASPKVESVMRSIDR 166
H+ ++ ++
Sbjct: 113 -HLDPERLFELLSLCYS 128
Score = 46.4 bits (110), Expect = 7e-06
Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 13/89 (14%)
Query: 370 YHPNGFYDDL--------DVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTG 421
H + +Y ++ L Y K +VLDIG G G G
Sbjct: 8 IHTSDYYFLFEEKFRGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE----G 63
Query: 422 -KVYAVEHIEDLVAQANKSMHTYYPNLME 449
+ V+ ED++ + + +E
Sbjct: 64 IESIGVDINEDMIKFCEGKFNVVKSDAIE 92
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 53.4 bits (128), Expect = 3e-08
Identities = 23/127 (18%), Positives = 46/127 (36%), Gaps = 18/127 (14%)
Query: 202 LEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYP 261
L+ + +Y+ GA++LD+GS YL +G A E + A K++ +
Sbjct: 12 LQKVANYVPKGARLLDVGSDHAYL-PIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEH-- 68
Query: 262 NLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQLKPGGVMWFTIGNAEE 321
L ++ +G D I + G G ++ + N +
Sbjct: 69 GL--TSKIDVRLANGLSAFEEADNIDTITICGMG-------------GRLIADILNNDID 113
Query: 322 MLKNNRR 328
L++ +
Sbjct: 114 KLQHVKT 120
Score = 50.3 bits (120), Expect = 4e-07
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 47 LDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNP 106
L ++ + +G ++LD+GS + Y L +G I E + Q A NV
Sbjct: 12 LQKVANYVPKGARLLDVGSDHAYLPIFLL-QMGYCDFAIAGEVVNGPYQSALKNVSEHGL 70
Query: 107 EFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGG 138
+I L +G + + D I + G
Sbjct: 71 T----SKIDVRLANGLSAFEEADNIDTITICG 98
Score = 47.2 bits (112), Expect = 3e-06
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 386 LEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
L+ + +Y+ GA++LD+GS YL +G A E + A K
Sbjct: 12 LQKVANYVPKGARLLDVGSDHAYL-PIFLLQMGYCDFAIAGEVVNGPYQSALK 63
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 53.1 bits (127), Expect = 3e-08
Identities = 22/127 (17%), Positives = 48/127 (37%), Gaps = 12/127 (9%)
Query: 203 EILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPN 262
+L+ L+P ++L +G G+ L+ + P V +V++ +VA
Sbjct: 34 ALLEPELRPEDRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQA-------C 84
Query: 263 LMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQLKPGGVMWFTIGNAEEM 322
++++ D R+ +DV+ G + L + P V + +++
Sbjct: 85 YAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDAL---LAGERDPWTVSSEGVHTVDQV 141
Query: 323 LKNNRRT 329
L R
Sbjct: 142 LSEVSRV 148
Score = 43.1 bits (101), Expect = 7e-05
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 365 EQKYW------YHPNGFYDDLDVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVG 418
E +YW + YD + +L+ L+P ++L +G G+ L+ +
Sbjct: 6 EVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPEDRILVLGCGNSALSYELFLGGF 65
Query: 419 PTGKVYAVEHIEDLVAQANK 438
P V +V++ +VA
Sbjct: 66 P--NVTSVDYSSVVVAAMQA 83
Score = 42.7 bits (100), Expect = 1e-04
Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 14/106 (13%)
Query: 33 QDNTKFSKFQQ-AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG--KVIGIEH 89
D+ + F + L EL ++L +G GN + L G V +++
Sbjct: 18 ADSAPYDWFGDFSSFRALLEPELRPEDRILVLGCGNSALSYELF----LGGFPNVTSVDY 73
Query: 90 IPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIH 135
+V + ++++ D RK A +D++
Sbjct: 74 SSVVVAAMQAC-------YAHVPQLRWETMDVRKLDFPSASFDVVL 112
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella
burnetii}
Length = 225
Score = 52.6 bits (127), Expect = 4e-08
Identities = 25/137 (18%), Positives = 49/137 (35%), Gaps = 14/137 (10%)
Query: 185 SLGFGSVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEH 244
M + AQ L +L ++ KV+DIG+ +GY M + G + +
Sbjct: 39 RSFSTYAMQTAPEQAQLLALLVKLMQA-KKVIDIGTFTGYSAIAMGLALPKDGTLITCDV 97
Query: 245 IEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGRE------GHAAEGPYDVIYVGGAVHHY 298
E A A + Y+ ++ ++ YD+IY+ +
Sbjct: 98 DEKSTALAKE----YWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADKANT 153
Query: 299 PF---KLMDQLKPGGVM 312
+ + L+ GG++
Sbjct: 154 DLYYEESLKLLREGGLI 170
Score = 38.4 bits (90), Expect = 0.003
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 398 KVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
KV+DIG+ +GY M + G + + E A A +
Sbjct: 67 KVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKE 107
Score = 37.2 bits (87), Expect = 0.006
Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 16/86 (18%)
Query: 58 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG---RI 114
KKV+DIG+ GY + + K G +I + + A + K G +I
Sbjct: 66 KKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEY-------WEKAGLSDKI 118
Query: 115 KFVLGDGR------KGYLDEAPYDII 134
L + YD+I
Sbjct: 119 GLRLSPAKDTLAELIHAGQAWQYDLI 144
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 52.3 bits (126), Expect = 4e-08
Identities = 27/151 (17%), Positives = 50/151 (33%), Gaps = 19/151 (12%)
Query: 203 EILKDYL--KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYY 260
+IL + + +LD+G G G + +A + + A +
Sbjct: 42 KILVENVVVDKDDDILDLGCGYGVIGIALAD---EVKSTTMADINRRAIKLAKE---NIK 95
Query: 261 PNLMEGGRVQFVDGDGREGHAAEGPYDVIY------VGGAVHHYPFK-LMDQLKPGGVMW 313
N ++ ++ V D E + Y+ I G V H + + LK G +W
Sbjct: 96 LNNLDNYDIRVVHSDLYEN-VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIW 154
Query: 314 FTIG---NAEEMLKNNRRTESNLAVVKAHKK 341
I A+ + K + N+ V
Sbjct: 155 VVIQTKQGAKSLAKYMKDVFGNVETVTIKGG 185
Score = 38.1 bits (89), Expect = 0.003
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 13/91 (14%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 112
+ + +LD+G G G LA + + + ++ A N+ N + +
Sbjct: 49 VVDKDDDILDLGCGYGVIGIALA---DEVKSTTMADINRRAIKLAKENIKLNN---LDNY 102
Query: 113 RIKFVLGDGRKGYLDEAPYDII------HVG 137
I+ V D + + + Y+ I G
Sbjct: 103 DIRVVHSDLYEN-VKDRKYNKIITNPPIRAG 132
Score = 33.8 bits (78), Expect = 0.064
Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 12/92 (13%)
Query: 367 KYWYHPNGF-YDDLDVHAQALEILKDYL--KPGAKVLDIGSGSGYLTACMAHMVGPTGKV 423
K+ F Y +D + +IL + + +LD+G G G + +A
Sbjct: 24 KFKTDSGVFSYGKVD---KGTKILVENVVVDKDDDILDLGCGYGVIGIALAD---EVKST 77
Query: 424 YAVEHIEDLVAQANKSMHTYYPNLMEGGRVQF 455
+ + A + N ++ ++
Sbjct: 78 TMADINRRAIKLAKE---NIKLNNLDNYDIRV 106
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 52.6 bits (126), Expect = 5e-08
Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 16/128 (12%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGR 268
VLD G+G + G K Y +E + + +A + +
Sbjct: 21 SNLDKTVLDCGAGGDLPPLSIFVEDG--YKTYGIEISDLQLKKAENF------SRENNFK 72
Query: 269 VQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQ--------LKPGGVMWFTIGNAE 320
+ GD R+ + +Y G + H + + LKPGG+ +
Sbjct: 73 LNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTK 132
Query: 321 EMLKNNRR 328
+ N
Sbjct: 133 DERYNKGE 140
Score = 49.1 bits (117), Expect = 7e-07
Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 17/118 (14%)
Query: 49 DLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEF 108
E K VLD G+G + G K GIE +++A + N
Sbjct: 16 KYCNESNLDKTVLDCGAGGDLPPLSIFVEDG--YKTYGIEISDLQLKKAENFSRENNF-- 71
Query: 109 VKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEGVRFGHIASPKVESVMRSIDR 166
++ GD RK + ++ G+I H+ V+ + I R
Sbjct: 72 ----KLNISKGDIRKLPFKDESMSFVYSYGTIF---------HMRKNDVKEAIDEIKR 116
Score = 34.9 bits (80), Expect = 0.033
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
VLD G+G + G K Y +E + + +A
Sbjct: 21 SNLDKTVLDCGAGGDLPPLSIFVEDG--YKTYGIEISDLQLKKAEN 64
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Length = 242
Score = 52.7 bits (127), Expect = 5e-08
Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 14/132 (10%)
Query: 190 SVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLV 249
+ M AQ +++L + KVL++G+ +GY M+ + G+V + E
Sbjct: 40 ANMQVAPEQAQFMQMLIRLTRA-KKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWT 98
Query: 250 AQANKSMHTYYPNLMEGGRVQFVDGDGRE------GHAAEGPYDVIYVGGAVHHYPF--- 300
A+ Y+ + +++ G + E +D I++ +Y
Sbjct: 99 KHAHP----YWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDADKTNYLNYYE 154
Query: 301 KLMDQLKPGGVM 312
+ + P G++
Sbjct: 155 LALKLVTPKGLI 166
Score = 38.0 bits (89), Expect = 0.003
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 398 KVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
KVL++G+ +GY M+ + G+V + E A+
Sbjct: 63 KVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHP 103
Score = 37.3 bits (87), Expect = 0.006
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 16/86 (18%)
Query: 58 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG---RI 114
KKVL++G+ GY ++ + G+VI + + A + + +I
Sbjct: 62 KKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPY-------WREAKQEHKI 114
Query: 115 KFVLGDGR------KGYLDEAPYDII 134
K LG E +D I
Sbjct: 115 KLRLGPALDTLHSLLNEGGEHQFDFI 140
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 52.9 bits (127), Expect = 5e-08
Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 21/131 (16%)
Query: 197 VHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSM 256
+H + + +PG +L++GS G T+ + + VE E+ ++ A +
Sbjct: 29 MHPFMVRAFTPFFRPG-NLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRL 84
Query: 257 HTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHH--YPFKLMDQ-----LKPG 309
+ ++ E YD I + + H P L+ + L G
Sbjct: 85 KD---------GITYIHSR-FEDAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEG 134
Query: 310 GVMWFTIGNAE 320
G ++ NA
Sbjct: 135 GRLFLVCPNAN 145
Score = 45.6 bits (108), Expect = 1e-05
Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 15/95 (15%)
Query: 56 EGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRATHNVISGNPEFVKDGRI 114
+L++GS G FT+ L + + +E + + A + G I
Sbjct: 42 RPGNLLELGSFKGDFTSRLQ----EHFNDITCVEASEEAISHAQGRLKDG---------I 88
Query: 115 KFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEGVRF 149
++ L YD I + +E I + V
Sbjct: 89 TYIHSRFEDAQLPR-RYDNIVLTHVLEHIDDPVAL 122
Score = 43.3 bits (102), Expect = 7e-05
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Query: 367 KYWYHPNGF-----YDDLDVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTG 421
+ G +D +H + + +PG +L++GS G T+ +
Sbjct: 10 QEIKDTAGHKYAYNFDFDVMHPFMVRAFTPFFRPG-NLLELGSFKGDFTSRLQEHF---N 65
Query: 422 KVYAVEHIEDLVAQANK 438
+ VE E+ ++ A
Sbjct: 66 DITCVEASEEAISHAQG 82
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 52.1 bits (125), Expect = 6e-08
Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 22/146 (15%)
Query: 189 GSVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDL 248
+ +P A I+ + +DIGSG G L+ +A + A++ + +
Sbjct: 21 SKTLFAPIYPIIAENIINRFGITAGTCIDIGSGPGALSIALAKQSD--FSIRALDFSKHM 78
Query: 249 VAQANKSMHTYYPNLMEGG---RVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQ 305
A K N+ + R+Q V GD + D+I G+V +
Sbjct: 79 NEIALK-------NIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDV--AT 129
Query: 306 --------LKPGGVMWFTIGNAEEML 323
LK GG + G + L
Sbjct: 130 AFREIYRILKSGGKTYIGGGFGNKEL 155
Score = 47.9 bits (114), Expect = 2e-06
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 57 GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKF 116
+DIGSG G + LA + ++ + + A N+ N + RI+
Sbjct: 44 AGTCIDIGSGPGALSIALAKQSD--FSIRALDFSKHMNEIALKNIADAN----LNDRIQI 97
Query: 117 VLGDGRKGYLDEAPYDIIHVGGSIEDIPE 145
V GD +++ D+I GS+ +
Sbjct: 98 VQGDVHNIPIEDNYADLIVSRGSVFFWED 126
Score = 40.2 bits (94), Expect = 6e-04
Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 9/82 (10%)
Query: 364 EEQKYWYHPNGFYDDL------DVHAQALEILKDYLKP-GAKVLDIGSGSGYLTACMAHM 416
++K+ D++ ++ E + + +DIGSG G L+ +A
Sbjct: 5 NKKKFDKKGAKNMDEISKTLFAPIYPIIAENIINRFGITAGTCIDIGSGPGALSIALAKQ 64
Query: 417 VGPTGKVYAVEHIEDLVAQANK 438
+ A++ + + A K
Sbjct: 65 SD--FSIRALDFSKHMNEIALK 84
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 53.0 bits (126), Expect = 7e-08
Identities = 36/206 (17%), Positives = 66/206 (32%), Gaps = 18/206 (8%)
Query: 195 PKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 254
P L +LK G VLD+G G+LT +A GP+ ++ ++ L+ A +
Sbjct: 30 PSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPS-RMVGLDIDSRLIHSARQ 88
Query: 255 SMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQLKPGGVMWF 314
++ Y + EG + +P L P
Sbjct: 89 NIRHY------LSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQV 142
Query: 315 TIGNAEEMLKNNRRTESNLAVVKAHKKDHGEWEEEFMGRLWRLPALASVEEQKYWYHPNG 374
+ A+ + N V D + E + L+ + W H N
Sbjct: 143 PLDGADTSVFPNNVVFVTGNYV----LDRDDLVEAQTPEYDVVLCLSLTK----WVHLNW 194
Query: 375 FYDDLDVHAQALEILKDYLKPGAKVL 400
+ L + + +L+PG ++
Sbjct: 195 GDEGL---KRMFRRIYRHLRPGGILV 217
Score = 52.7 bits (125), Expect = 1e-07
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 368 YWYHPNGFYDDLDVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 427
Y Y L +LK G VLD+G G+LT +A GP+ ++ ++
Sbjct: 25 YGYRNPSC------EDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPS-RMVGLD 77
Query: 428 HIEDLVAQANKSMHTY 443
L+ A +++ Y
Sbjct: 78 IDSRLIHSARQNIRHY 93
Score = 50.3 bits (119), Expect = 6e-07
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 47 LDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNV 101
L L E G+ VLD+G G+ T +A G + +++G++ +L+ A N+
Sbjct: 37 LRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPS-RMVGLDIDSRLIHSARQNI 90
>2avd_A Catechol-O-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens}
SCOP: c.66.1.1
Length = 229
Score = 52.4 bits (126), Expect = 7e-08
Identities = 23/132 (17%), Positives = 41/132 (31%), Gaps = 14/132 (10%)
Query: 190 SVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLV 249
AQ L L ++ K LD+G+ +GY +A + G+V E
Sbjct: 49 GDSMMTCEQAQLLANLARLIQA-KKALDLGTFTGYSALALALALPADGRVVTCEVDAQPP 107
Query: 250 AQANKSMHTYYPNLMEGGRVQFVDGDGRE------GHAAEGPYDVIYVGGAVHHYPF--- 300
+ ++ E G +DV V +
Sbjct: 108 ELGRP----LWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYE 163
Query: 301 KLMDQLKPGGVM 312
+ + L+PGG++
Sbjct: 164 RCLQLLRPGGIL 175
Score = 38.9 bits (91), Expect = 0.002
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 398 KVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
K LD+G+ +GY +A + G+V E
Sbjct: 72 KALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRP 112
Score = 38.1 bits (89), Expect = 0.003
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 10/83 (12%)
Query: 58 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFV 117
KK LD+G+ GY LA + G+V+ E Q + + +I
Sbjct: 71 KKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE----AEHKIDLR 126
Query: 118 LGDGR------KGYLDEAPYDII 134
L + +D+
Sbjct: 127 LKPALETLDELLAAGEAGTFDVA 149
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 51.4 bits (123), Expect = 1e-07
Identities = 25/124 (20%), Positives = 45/124 (36%), Gaps = 14/124 (11%)
Query: 192 MSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLV-- 249
++ + A L L + G + DIG GSG ++ G+ +E D +
Sbjct: 38 ITKSPMRALTLAALA--PRRGELLWDIGGGSGSVSVEWCL---AGGRAITIEPRADRIEN 92
Query: 250 AQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFK-LMDQLKP 308
Q N + P ++ V G A + +++GG + L + L P
Sbjct: 93 IQKNIDTYGLSPR------MRAVQGTAPAALADLPLPEAVFIGGGGSQALYDRLWEWLAP 146
Query: 309 GGVM 312
G +
Sbjct: 147 GTRI 150
Score = 40.6 bits (95), Expect = 4e-04
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 7/70 (10%)
Query: 380 DVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLV--AQAN 437
+ A L L + G + DIG GSG ++ G+ +E D + Q N
Sbjct: 42 PMRALTLAALA--PRRGELLWDIGGGSGSVSVEWCL---AGGRAITIEPRADRIENIQKN 96
Query: 438 KSMHTYYPNL 447
+ P +
Sbjct: 97 IDTYGLSPRM 106
Score = 40.2 bits (94), Expect = 5e-04
Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 10/105 (9%)
Query: 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS 103
A+ L L G+ + DIG G+G + G+ I IE ++ N+
Sbjct: 45 ALTLAAL--APRRGELLWDIGGGSGSVSVEWC---LAGGRAITIEPRADRIENIQKNID- 98
Query: 104 GNPEFVKDGRIKFVLGDGRKGYLDEAPYD-IIHVGGSIEDIPEGV 147
+ R++ V G D + + GG + + + +
Sbjct: 99 ---TYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGGSQALYDRL 140
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 52.4 bits (125), Expect = 1e-07
Identities = 30/164 (18%), Positives = 55/164 (33%), Gaps = 17/164 (10%)
Query: 204 ILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNL 263
+++ Y K G VLD+G G G G+ Y V+ E + A N+
Sbjct: 57 LIRLYTKRGDSVLDLGCGKGGDLLKYER--AGIGEYYGVDIAEVSINDARV----RARNM 110
Query: 264 MEGGRVQFVDGDGRE-GHAAEGPYDVIYVGGAVHHYP----------FKLMDQLKPGGVM 312
+V F D +DVI + H+ + L+PGG
Sbjct: 111 KRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYF 170
Query: 313 WFTIGNAEEMLKNNRRTESNLAVVKAHKKDHGEWEEEFMGRLWR 356
T+ + + +L+ ++ + K + + E +
Sbjct: 171 IMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRF 214
Score = 37.8 bits (87), Expect = 0.006
Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 7/91 (7%)
Query: 56 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIK 115
G VLD+G G G LL + G+ G++ + A + ++
Sbjct: 64 RGDSVLDLGCGKGGD--LLKYERAGIGEYYGVDIAEVSINDARVR----ARNMKRRFKVF 117
Query: 116 FVLGDGRKGYLD-EAPYDIIHVGGSIEDIPE 145
F D ++D +D+I S
Sbjct: 118 FRAQDSYGRHMDLGKEFDVISSQFSFHYAFS 148
Score = 35.5 bits (81), Expect = 0.031
Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 4/89 (4%)
Query: 388 ILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNL 447
+++ Y K G VLD+G G G G+ Y V+ E + A
Sbjct: 57 LIRLYTKRGDSVLDLGCGKGGDLLKYER--AGIGEYYGVDIAEVSINDARVRARNMKRRF 114
Query: 448 MEGGRVQ--FTEMAEKVMQLRVHMMSFTL 474
R Q + + + V F+
Sbjct: 115 KVFFRAQDSYGRHMDLGKEFDVISSQFSF 143
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.25A {Corynebacterium glutamicum}
Length = 221
Score = 51.6 bits (124), Expect = 1e-07
Identities = 18/133 (13%), Positives = 42/133 (31%), Gaps = 18/133 (13%)
Query: 191 VMSSPKVHAQALEILKDYLKP-GAK-VLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDL 248
+ + ++ Q L L G+ + I +G + + + + + ++ +
Sbjct: 34 LPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEH 93
Query: 249 VAQANKSMHTYYPNLMEGG----RVQFVDGDGRE--GHAAEGPYDVIYVGGAVHHYPF-- 300
QA E G RV+F+ + A Y +++ +
Sbjct: 94 QRQAK-------ALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQVSPMDLKALV 146
Query: 301 -KLMDQLKPGGVM 312
L+ GG +
Sbjct: 147 DAAWPLLRRGGAL 159
Score = 40.0 bits (94), Expect = 8e-04
Identities = 9/81 (11%), Positives = 22/81 (27%), Gaps = 5/81 (6%)
Query: 58 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFV 117
+ I G + + + I+ + ++A R++F+
Sbjct: 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAG---YSPSRVRFL 114
Query: 118 LGDGRK--GYLDEAPYDIIHV 136
L L Y ++
Sbjct: 115 LSRPLDVMSRLANDSYQLVFG 135
Score = 36.9 bits (86), Expect = 0.008
Identities = 5/44 (11%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 396 GAK-VLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
G+ + I +G + + + + + ++ + QA
Sbjct: 56 GSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKA 99
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase,
transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Length = 232
Score = 51.5 bits (124), Expect = 1e-07
Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 17/130 (13%)
Query: 191 VMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVA 250
V ++ ++ L +L+IG+ GY + A + V +E E ++
Sbjct: 52 VPIVDRLTLDLIKQLIRMNNV-KNILEIGTAIGYSSMQFASI-SDDIHVTTIERNETMIQ 109
Query: 251 QANKSMHTYYPNLMEGG---RVQFVDGDGRE--GHAAEGPYDVIYVGGAVHHYPF---KL 302
A + NL +V+ ++G+ E + + YD+I++ A
Sbjct: 110 YAKQ-------NLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDAAKAQSKKFFEIY 162
Query: 303 MDQLKPGGVM 312
LK G++
Sbjct: 163 TPLLKHQGLV 172
Score = 36.5 bits (85), Expect = 0.013
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 58 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG---RI 114
K +L+IG+ GY + A + V IE ++Q A N ++
Sbjct: 73 KNILEIGTAIGYSSMQFA-SISDDIHVTTIERNETMIQYAKQN-------LATYHFENQV 124
Query: 115 KFVLGDGRK--GYLDEAPYDII 134
+ + G+ + +++ YD+I
Sbjct: 125 RIIEGNALEQFENVNDKVYDMI 146
Score = 35.7 bits (83), Expect = 0.022
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 398 KVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
+L+IG+ GY + A + V +E E ++ A +
Sbjct: 74 NILEIGTAIGYSSMQFASI-SDDIHVTTIERNETMIQYAKQ 113
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA,
2'-O-methylation, coiled-coil, methyltransfer binding,
rRNA processing; HET: SAM; 2.60A {Sulfolobus
solfataricus} PDB: 3id5_B* 3pla_E*
Length = 232
Score = 51.2 bits (122), Expect = 2e-07
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 196 KVHAQALEILKD-YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE----HIEDLVA 250
K+ L+ LK ++ G KVL +G+ SG + ++ ++ GK Y VE + +L+
Sbjct: 60 KLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLL 119
Query: 251 QANK 254
A +
Sbjct: 120 VAQR 123
Score = 49.7 bits (118), Expect = 6e-07
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 391 DYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE----HIEDLVAQANK 438
+ ++ G KVL +G+ SG + ++ ++ GK Y VE + +L+ A +
Sbjct: 72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR 123
Score = 34.6 bits (79), Expect = 0.043
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 39 SKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQ 95
SK A++ + + +G KVL +G+ +G + ++ + GK G+E P++V+
Sbjct: 59 SKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVR 115
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium; 1.88A {Klebsiella pneumoniae subsp}
Length = 248
Score = 50.4 bits (121), Expect = 3e-07
Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 11/129 (8%)
Query: 190 SVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLV 249
Q L +L + ++L+IG+ GY T MA + G++ +E
Sbjct: 43 PAHDVAANQGQFLALLVRLTQA-KRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHA 101
Query: 250 AQANKSMHTYYPNLMEGGRVQFVDGDGRE---GHAAEGPYDVIYVGGAVHHYPF---KLM 303
A + RV +G + +D+I++ + P +
Sbjct: 102 QVARE----NLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFIDADKPNNPHYLRWAL 157
Query: 304 DQLKPGGVM 312
+PG ++
Sbjct: 158 RYSRPGTLI 166
Score = 39.6 bits (93), Expect = 0.001
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 13/83 (15%)
Query: 58 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG---RI 114
K++L+IG+ GY T +A + G+++ +E Q A N G R+
Sbjct: 65 KRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVAREN-------LQLAGVDQRV 117
Query: 115 KFVLGDGR---KGYLDEAPYDII 134
G + + +D+I
Sbjct: 118 TLREGPALQSLESLGECPAFDLI 140
Score = 37.3 bits (87), Expect = 0.007
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 398 KVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
++L+IG+ GY T MA + G++ +E A +
Sbjct: 66 RILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARE 106
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A
{Synechocystis SP}
Length = 232
Score = 50.4 bits (121), Expect = 3e-07
Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 14/132 (10%)
Query: 190 SVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLV 249
+ M AQ L +L +VL+IG GY MA + P G++ A + +
Sbjct: 52 APMQISPEQAQFLGLLISLTGA-KQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNAT 110
Query: 250 AQANKSMHTYYPNLMEGGRVQFVDGDGRE------GHAAEGPYDVIYVGGAVHHYPF--- 300
A A K Y+ ++ G +D+I++ +YP
Sbjct: 111 AIAKK----YWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADKRNYPRYYE 166
Query: 301 KLMDQLKPGGVM 312
++ L+ GG+M
Sbjct: 167 IGLNLLRRGGLM 178
Score = 38.8 bits (91), Expect = 0.002
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 398 KVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
+VL+IG GY MA + P G++ A + + A A K
Sbjct: 75 QVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKK 115
Score = 37.6 bits (88), Expect = 0.005
Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 18/87 (20%)
Query: 58 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG---RI 114
K+VL+IG GY +A + G++I + P A + K G +I
Sbjct: 74 KQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKY-------WQKAGVAEKI 126
Query: 115 KFVLGDGRKGYLDE-------APYDII 134
LG L++ +D+I
Sbjct: 127 SLRLGPALA-TLEQLTQGKPLPEFDLI 152
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta
with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB:
3dul_A*
Length = 223
Score = 49.9 bits (120), Expect = 4e-07
Identities = 24/131 (18%), Positives = 44/131 (33%), Gaps = 13/131 (9%)
Query: 190 SVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLV 249
+ L++L +L+IG+ GY T +A + G+V +E E
Sbjct: 38 PAHDVSPTQGKFLQLLVQIQGA-RNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHA 96
Query: 250 AQANKSMHTYYPNLMEGGRVQFVDGDGRE-----GHAAEGPYDVIYVGGAVHHYPF---K 301
A RV+ G + + P+D I++ + P
Sbjct: 97 DIARS----NIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQNNPAYFEW 152
Query: 302 LMDQLKPGGVM 312
+ +PG V+
Sbjct: 153 ALKLSRPGTVI 163
Score = 38.0 bits (89), Expect = 0.004
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 398 KVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
+L+IG+ GY T +A + G+V +E E A
Sbjct: 61 NILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARS 101
Score = 37.6 bits (88), Expect = 0.004
Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 17/86 (19%)
Query: 58 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG---RI 114
+ +L+IG+ GY T LA + G+V+ +E + A N + R+
Sbjct: 60 RNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSN-------IERANLNDRV 112
Query: 115 KFVLGDGRKGYLDE------APYDII 134
+ G L + P+D I
Sbjct: 113 EVRTGLALD-SLQQIENEKYEPFDFI 137
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 50.7 bits (121), Expect = 5e-07
Identities = 29/160 (18%), Positives = 56/160 (35%), Gaps = 34/160 (21%)
Query: 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRV 269
+++D+G G+G + + P KV V+ VA + ++ T P ++ R
Sbjct: 221 NLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALD--RC 277
Query: 270 QFVDGDGREGHAAEGPYDVI------YVGGAVHHYPFKLM-----DQLKPGGVMWFTI-- 316
+F+ + G ++ + + A+ M LK G ++
Sbjct: 278 EFMINNALSG-VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 336
Query: 317 ------------GNAEEMLKNNRRTESNLAVVKAHKKDHG 344
GN + NN+ V+KA K +H
Sbjct: 337 HLDYFHKLKKIFGNCTTIATNNKFV-----VLKAVKLEHH 371
Score = 36.8 bits (85), Expect = 0.013
Identities = 21/108 (19%), Positives = 45/108 (41%), Gaps = 16/108 (14%)
Query: 47 LDDLSEELTE------GKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN 100
LD + + +++D+G GNG L + KV+ ++ P V + N
Sbjct: 207 LDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQA-KVVFVDESPMAVASSRLN 265
Query: 101 VISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII------HVGGSIED 142
V + PE + R +F++ + G ++ ++ + H ++ D
Sbjct: 266 VETNMPEALD--RCEFMINNALSG-VEPFRFNAVLCNPPFHQQHALTD 310
Score = 36.0 bits (83), Expect = 0.022
Identities = 32/240 (13%), Positives = 61/240 (25%), Gaps = 39/240 (16%)
Query: 207 DYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEG 266
D + VL + G L+ +A + I D + N ++
Sbjct: 34 DDTEIRGPVLILNDAFGALSCALAE--------HKPYSIGDSYISELATRENLRLNGIDE 85
Query: 267 GRVQFVDGDGREGHAAEGPYDVIYVG-----GAVHHYPFKLMDQLKPGGVMWFTIGNAEE 321
V+F+D V+ + + L + +
Sbjct: 86 SSVKFLDST----ADYPQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGA----- 136
Query: 322 MLKNNRRTESNLAVVKAHKKDHGEWEEEFMGRLWRLPA---LASVEEQKYWYHPNGFYDD 378
K S L + + RL + Q + G
Sbjct: 137 --KARDIHTSTLELFEKVLGPTTTTLAWKKARLINCTFNEPQLADAPQTVSWKLEGTDWT 194
Query: 379 LDVHA---------QALEILKDYL--KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 427
+ HA +L +++D+G G+G + + P KV V+
Sbjct: 195 IHNHANVFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVD 253
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing,
snoRNP, structural genomics, BSGC structure funded by
NIH; 1.60A {Methanocaldococcus jannaschii} SCOP:
c.66.1.3 PDB: 1g8s_A
Length = 230
Score = 49.7 bits (118), Expect = 5e-07
Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 24/133 (18%)
Query: 196 KVHAQALEILKD-YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEH----IEDLVA 250
K+ A ++ LK +K +K+L +G+ +G + + G VYA+E+ + +L+
Sbjct: 58 KLAAAIIKGLKVMPIKRDSKILYLGASAGTTPS-HVADIADKGIVYAIEYAPRIMRELLD 116
Query: 251 QANKSMHTYYPNLMEGGRVQFVDGDGR---EGHAAEGPYDVIYVGGAVHHYPFKLMDQ-- 305
+ N + + GD E DVIY A + L+
Sbjct: 117 ACAE-----REN------IIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAK 165
Query: 306 --LKPGGVMWFTI 316
LK GG I
Sbjct: 166 WFLKKGGYGMIAI 178
Score = 43.9 bits (103), Expect = 5e-05
Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 392 YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEH----IEDLVAQANK 438
+K +K+L +G+ +G + + G VYA+E+ + +L+ +
Sbjct: 71 PIKRDSKILYLGASAGTTPS-HVADIADKGIVYAIEYAPRIMRELLDACAE 120
Score = 33.5 bits (76), Expect = 0.11
Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 11/116 (9%)
Query: 35 NTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLV 94
N SK A++ + K+L +G+ G + +A + G V IE+ P+++
Sbjct: 53 NPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVA-DIADKGIVYAIEYAPRIM 111
Query: 95 QRATHNVISGNPEFVKDGRIKFVLGDGRK--GYLDEAP-YDIIHVGGSIEDIPEGV 147
+ + I +LGD K Y + D+I+ + + E +
Sbjct: 112 RELLDAC-------AERENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEIL 160
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 49.9 bits (119), Expect = 5e-07
Identities = 34/202 (16%), Positives = 58/202 (28%), Gaps = 30/202 (14%)
Query: 199 AQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHT 258
A A+ L++G G+G + ++ + A++ ++ + +
Sbjct: 27 ATAMASAVHPKGEEPVFLELGVGTGRIA---LPLIARGYRYIALDADAAMLEVFRQKIAG 83
Query: 259 YYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQ----------LKP 308
+VQ V D R + + V H P D LKP
Sbjct: 84 ------VDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVP----DWPKVLAEAIRVLKP 133
Query: 309 GG---VMWFTIGNAEE-MLKNNRRTESNLAVVKAHKKDHGEWEEEFMGRLWRLPALASVE 364
GG W + E L+ R + + H + +E L RL
Sbjct: 134 GGALLEGWDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKPRTR 193
Query: 365 EQKYW---YHPNGFYDDLDVHA 383
E W P + L
Sbjct: 194 EVARWREERTPREALEALSERL 215
Score = 40.3 bits (94), Expect = 8e-04
Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 9/96 (9%)
Query: 42 QQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNV 101
Q A + E L++G G G L + + I ++ +++ +
Sbjct: 25 QIATAMASAVHPKGEEPVFLELGVGTGRIALPLI---ARGYRYIALDADAAMLEVFRQKI 81
Query: 102 ISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVG 137
D +++ V D R L + + V
Sbjct: 82 AG------VDRKVQVVQADARAIPLPDESVHGVIVV 111
Score = 37.6 bits (87), Expect = 0.005
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 11/69 (15%)
Query: 376 YDDLDVH--------AQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 427
YD L H A A+ L++G G+G + ++ + A++
Sbjct: 12 YDRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIA---LPLIARGYRYIALD 68
Query: 428 HIEDLVAQA 436
++
Sbjct: 69 ADAAMLEVF 77
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 50.7 bits (121), Expect = 6e-07
Identities = 35/136 (25%), Positives = 51/136 (37%), Gaps = 23/136 (16%)
Query: 203 EILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPN 262
E L G +VLD+G+G G LT +A +V VE V K +
Sbjct: 225 ERLGPEGVRGRQVLDLGAGYGALTLPLAR---MGAEVVGVEDDLASVLSLQKGLEAN--- 278
Query: 263 LMEGGRVQFVDGDGREGHAAEGPYDVIY------VGGAVHHYPFKLM-----DQLKPGGV 311
+ Q + D E E +D+I VGGAV + +L+PGGV
Sbjct: 279 ---ALKAQALHSDVDEALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGV 335
Query: 312 MWFTIG---NAEEMLK 324
+ E +L+
Sbjct: 336 FFLVSNPFLKYEPLLE 351
Score = 49.2 bits (117), Expect = 2e-06
Identities = 42/262 (16%), Positives = 82/262 (31%), Gaps = 46/262 (17%)
Query: 201 ALEILKDYLKP-GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTY 259
++L+ ++P G + LD+ G G+ + ++ + +
Sbjct: 34 VHDLLQKTVEPFGERALDLNPGVGWG-SLPLEGRMAVERLETSRAAFRCLTAS------- 85
Query: 260 YPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVG-------GAVHHYPFKLMDQLKPGGVM 312
G + + AA G YD++ + V L+ GG +
Sbjct: 86 ------GLQARLALPW----EAAAGAYDLVVLALPAGRGTAYVQASLVAAARALRMGGRL 135
Query: 313 WFTIGNAEEMLKNNRRTESNLAVVKAHKKDHGEWEEEFMGRLWRLPALASVEEQ------ 366
+ + + + + L +++ + + P L S+
Sbjct: 136 YLAGDKNKGFERYFKEARALLGYGVVVRREGPYRVA-LLEKEKEAPPLPSLWRAFSARIL 194
Query: 367 ----KYWYHPNGF-YDDLDVHAQAL-----EILKDYLKPGAKVLDIGSGSGYLTACMAHM 416
+ + P F +D + L E L G +VLD+G+G G LT +A
Sbjct: 195 GAEYTFHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLAR- 253
Query: 417 VGPTGKVYAVEHIEDLVAQANK 438
+V VE V K
Sbjct: 254 --MGAEVVGVEDDLASVLSLQK 273
Score = 35.3 bits (81), Expect = 0.037
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Query: 46 VLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGN 105
+ + L E G++VLD+G+G G T LA +V+G+E V + +
Sbjct: 223 LQERLGPEGVRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQKGLEANA 279
Query: 106 PEFVKDGRIKFVLGDGRKGYLDEAPYDII------HVGGSIED 142
+ + + D + +EA +DII HVGG++
Sbjct: 280 L------KAQALHSDVDEALTEEARFDIIVTNPPFHVGGAVIL 316
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 49.6 bits (118), Expect = 6e-07
Identities = 24/159 (15%), Positives = 51/159 (32%), Gaps = 24/159 (15%)
Query: 165 DRRRFIERPIMNNPYWD---IPQSLGFGSVMSSPKVHAQALEILKDYLKPGAKVLDIGSG 221
+ F+ + + W+ + + + + ++ P + L G G
Sbjct: 22 EVATFLHKT-VEEGGWEKCWEEEITPW----DQGRATPLIVHLVDTSSLPLGRALVPGCG 76
Query: 222 SGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHA 281
G+ + M P V ++ E +A+AN+ Y + + FV D
Sbjct: 77 GGHD---VVAMASPERFVVGLDISESALAKANE----TYGSSPKAEYFSFVKEDVFT-WR 128
Query: 282 AEGPYDVIYVGGAVHHYPFKLMDQ--------LKPGGVM 312
+D+I+ ++ LKP G +
Sbjct: 129 PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGEL 167
Score = 34.2 bits (78), Expect = 0.063
Identities = 16/106 (15%), Positives = 32/106 (30%), Gaps = 8/106 (7%)
Query: 43 QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVI 102
+++ + + L G G G+ +A V+G++ + +A
Sbjct: 53 TPLIVHLVDTSSLPLGRALVPGCGGGHDVVAMA---SPERFVVGLDISESALAKANET-- 107
Query: 103 SGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEGVR 148
K FV D + +D+I I +R
Sbjct: 108 --YGSSPKAEYFSFVKEDVFT-WRPTELFDLIFDYVFFCAIEPEMR 150
Score = 31.5 bits (71), Expect = 0.44
Identities = 25/148 (16%), Positives = 43/148 (29%), Gaps = 27/148 (18%)
Query: 312 MWFTIGNAEEMLKNNRRTESNLAVVKAHKKDHGE-WEEEFMGRLWRLPALASVEEQKYWY 370
M N+++ N HK WE+ W EE W
Sbjct: 1 MAEEQQNSDQSNGGNVIPTPEEVATFLHKTVEEGGWEK-----CWE-------EEITPWD 48
Query: 371 HPNGFYDDLDVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIE 430
+ ++ P + L G G G+ + M P V ++ E
Sbjct: 49 QG-------RATPLIVHLVDTSSLPLGRALVPGCGGGHD---VVAMASPERFVVGLDISE 98
Query: 431 DLVAQANKSMHTYYPNLMEGGRVQFTEM 458
+A+AN+ Y + + F +
Sbjct: 99 SALAKANE----TYGSSPKAEYFSFVKE 122
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 49.4 bits (118), Expect = 7e-07
Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 15/114 (13%)
Query: 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRV 269
+ +VLD+G G G+L +A + V+ LV A + E
Sbjct: 51 RQPERVLDLGCGEGWLLRALADRG---IEAVGVDGDRTLVDAARAAGAG------EVHLA 101
Query: 270 QFVDGDGREGHAAEGPYDVIYVGGAVHHYPF-KLMDQ----LKPGGVMWFTIGN 318
+ + YD+I A+ H +L+ L PGG + +
Sbjct: 102 SYAQLAEAK-VPVGKDYDLICANFALLHQDIIELLSAMRTLLVPGGALVIQTLH 154
Score = 38.6 bits (90), Expect = 0.002
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 56 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRA 97
+ ++VLD+G G G+ LA + + +G++ LV A
Sbjct: 52 QPERVLDLGCGEGWLLRALA---DRGIEAVGVDGDRTLVDAA 90
Score = 33.2 bits (76), Expect = 0.11
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 4/72 (5%)
Query: 366 QKYWYHPNGFYDDLDVHAQALEILKDYL-KPGAKVLDIGSGSGYLTACMAHMVGPTGKVY 424
Q + + IL L + +VLD+G G G+L +A +
Sbjct: 22 QAWIDAVRHGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRG---IEAV 78
Query: 425 AVEHIEDLVAQA 436
V+ LV A
Sbjct: 79 GVDGDRTLVDAA 90
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA
binding, structural genomics, BSGC structure funded by
NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB:
2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Length = 227
Score = 48.9 bits (116), Expect = 8e-07
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 196 KVHAQALEILKD-YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEH----IEDLVA 250
K+ A + LK+ +KPG VL +G SG + ++ +VG GK++ +E + +LV
Sbjct: 57 KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVP 116
Query: 251 QANK 254
+
Sbjct: 117 IVEE 120
Score = 47.0 bits (111), Expect = 4e-06
Identities = 21/108 (19%), Positives = 44/108 (40%), Gaps = 16/108 (14%)
Query: 392 YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEH----IEDLVAQANK--------- 438
+KPG VL +G SG + ++ +VG GK++ +E + +LV +
Sbjct: 70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILG 129
Query: 439 --SMHTYYPNLMEGGRVQFTEMA-EKVMQLRVHMMSFTLEEQSIIILS 483
+ Y L+ V F ++A ++ + L+ +++
Sbjct: 130 DATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA 177
Score = 35.8 bits (82), Expect = 0.021
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 44 AMVLDDLSE-ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIP----QLVQRAT 98
A +++ L + GK VL +G +G + ++ VG GK+ GIE P +LV
Sbjct: 60 AAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVE 119
Query: 99 --HNVI 102
N++
Sbjct: 120 ERRNIV 125
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 49.3 bits (117), Expect = 9e-07
Identities = 20/142 (14%), Positives = 40/142 (28%), Gaps = 24/142 (16%)
Query: 194 SPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQAN 253
+ L + P ++D G+G T ++ +V ++ + + A
Sbjct: 39 VERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFF---PRVIGLDVSKSALEIAA 95
Query: 254 KSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYD-----VIYVGGAVHHYPFKLMDQ--- 305
K + + DG A + IY+ HH P + +
Sbjct: 96 KE--------NTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQ 147
Query: 306 -----LKPGGVMWFTIGNAEEM 322
L G M+ +
Sbjct: 148 SLRILLGKQGAMYLIELGTGCI 169
Score = 39.6 bits (92), Expect = 0.001
Identities = 11/84 (13%), Positives = 24/84 (28%), Gaps = 11/84 (13%)
Query: 331 SNLAVVKAHKKDHGEWEEEFMGRLWRLPALASVEEQKYWYHPNGFYDDLDVHAQALEILK 390
L+ +K + + E++ W W + L +
Sbjct: 3 EKLSAIKKPDINVADAWEQY----WN--KTLVNSTPVLWDA-----NVERAVVVDLPRFE 51
Query: 391 DYLKPGAKVLDIGSGSGYLTACMA 414
P ++D G+G T ++
Sbjct: 52 LLFNPELPLIDFACGNGTQTKFLS 75
Score = 38.9 bits (90), Expect = 0.002
Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 17/121 (14%)
Query: 47 LDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNP 106
L ++D GNG T L+ +VIG++ ++ A + N
Sbjct: 47 LPRFELLFNPELPLIDFACGNGTQTKFLS---QFFPRVIGLDVSKSALEIAAKENTAANI 103
Query: 107 EFVKDGRIKFVLGDGRKGYLDEAPYD-IIHVGGSIEDIPEGVRFGHIASPKVESVMRSID 165
+ R+ L + + D I++ F HI K E + +S+
Sbjct: 104 SY----RLLDGLVPEQAAQIHSEIGDANIYMRTG---------FHHIPVEKRELLGQSLR 150
Query: 166 R 166
Sbjct: 151 I 151
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure
initiative, NEW research center for structural genomics,
nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Length = 233
Score = 48.4 bits (116), Expect = 1e-06
Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 18/131 (13%)
Query: 191 VMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVA 250
V + ++L L P A++L+IG+ GY MA + P + ++E E
Sbjct: 35 VPIMDLLGMESLLHLLKMAAP-ARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYE 92
Query: 251 QANKSMHTYYPNLMEGG---RVQFVDGDGRE---GHAAEGPYDVIYVGGAVHHYPF---K 301
+A+K ++ G R++ + GD + +DV+++ A Y
Sbjct: 93 EAHK-------HVKALGLESRIELLFGDALQLGEKLELYPLFDVLFIDAAKGQYRRFFDM 145
Query: 302 LMDQLKPGGVM 312
++PGG++
Sbjct: 146 YSPMVRPGGLI 156
Score = 36.5 bits (85), Expect = 0.013
Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 14/83 (16%)
Query: 58 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG---RI 114
++L+IG+ GY +A + + ++ IE + + A + G RI
Sbjct: 56 ARILEIGTAIGYSAIRMAQALPE-ATIVSIERDERRYEEAHKH-------VKALGLESRI 107
Query: 115 KFVLGDGR---KGYLDEAPYDII 134
+ + GD + +D++
Sbjct: 108 ELLFGDALQLGEKLELYPLFDVL 130
Score = 34.5 bits (80), Expect = 0.045
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 398 KVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
++L+IG+ GY MA + P + ++E E +A+K
Sbjct: 57 RILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHK 96
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 49.1 bits (117), Expect = 1e-06
Identities = 31/198 (15%), Positives = 68/198 (34%), Gaps = 18/198 (9%)
Query: 143 IPEGVRFGHIASPKVESVMRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQAL 202
+P G + V + + ER ++ + ++D + + ++ ++A
Sbjct: 15 VPRGSMSNQLERGPVRTPHADVLLASVGERGVLCD-FYDEGAADTYRDLIQDADGTSEAR 73
Query: 203 EILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTG-KVYAVEHIEDLVAQANKSMHTYYP 261
E VL++ +G G LT + G +V A+E ++A K
Sbjct: 74 EFATRTGPVSGPVLELAAGMGRLTFPFLDL----GWEVTALELSTSVLAAFRK--RLAEA 127
Query: 262 NLMEGGRVQFVDGDGREGHAAEGPYDVIY-VGGAVHHYP-------FKLM-DQLKPGGVM 312
R V GD A + + + G+++ + + + L+PGG
Sbjct: 128 PADVRDRCTLVQGDMSA-FALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKF 186
Query: 313 WFTIGNAEEMLKNNRRTE 330
++ +E +
Sbjct: 187 LLSLAMSEAAESEPLERK 204
Score = 38.0 bits (88), Expect = 0.005
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 375 FYDDL----DVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMA 414
Y DL D ++A E VL++ +G G LT
Sbjct: 58 TYRDLIQDADGTSEAREFATRTGPVSGPVLELAAGMGRLTFPFL 101
Score = 38.0 bits (88), Expect = 0.005
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 8/90 (8%)
Query: 46 VLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRATHNVISG 104
+ + VL++ +G G T G +V +E ++ +
Sbjct: 72 AREFATRTGPVSGPVLELAAGMGRLTFPFL----DLGWEVTALELSTSVLAAFRKRLAEA 127
Query: 105 NPEFVKDGRIKFVLGDGRKGYLDEAPYDII 134
+ R V GD LD+ + +
Sbjct: 128 PADV--RDRCTLVQGDMSAFALDK-RFGTV 154
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH;
2.30A {Leptospira interrogans}
Length = 239
Score = 48.5 bits (116), Expect = 2e-06
Identities = 27/143 (18%), Positives = 50/143 (34%), Gaps = 25/143 (17%)
Query: 190 SVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLV 249
+ M Q L IL ++++IG+ +GY + C A + GK+ + E+
Sbjct: 40 ANMQISPEEGQFLNILTKISGA-KRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWT 98
Query: 250 AQANKSMHTYYPNLMEGGRVQFVDGDGRE-----------------GHAAEGPYDVIYVG 292
A K Y+ ++ G E D+ ++
Sbjct: 99 NVARK----YWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLD 154
Query: 293 GAVHHYPF---KLMDQLKPGGVM 312
+YP ++ LKPGG++
Sbjct: 155 ADKENYPNYYPLILKLLKPGGLL 177
Score = 38.8 bits (91), Expect = 0.002
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 398 KVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
++++IG+ +GY + C A + GK+ + E+ A K
Sbjct: 63 RIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARK 103
Score = 36.5 bits (85), Expect = 0.010
Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 10/66 (15%)
Query: 58 KKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG---RI 114
K++++IG+ GY + A + + GK++ + + A + ++G +I
Sbjct: 62 KRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKY-------WKENGLENKI 114
Query: 115 KFVLGD 120
LG
Sbjct: 115 FLKLGS 120
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 48.3 bits (115), Expect = 2e-06
Identities = 12/88 (13%), Positives = 32/88 (36%), Gaps = 9/88 (10%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGR 268
++ D+G+G+G +A + +V E +++ A +S+ R
Sbjct: 34 DDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAFS-AR 91
Query: 269 VQFVDGDGREGHAA-------EGPYDVI 289
++ ++ D A + + +
Sbjct: 92 IEVLEADVTLRAKARVEAGLPDEHFHHV 119
Score = 43.0 bits (101), Expect = 9e-05
Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGR 452
++ D+G+G+G +A + +V E +++ A +S+ R
Sbjct: 34 DDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAFS-AR 91
Query: 453 VQFTEM 458
++ E
Sbjct: 92 IEVLEA 97
Score = 41.4 bits (97), Expect = 3e-04
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 54 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR 113
++ D+G+G G +A + K +V E ++ + A ++ + R
Sbjct: 34 DDRACRIADLGAGAGAAGMAVAARLEKA-EVTLYERSQEMAEFARRSLELPDNAAFSA-R 91
Query: 114 IKFVLGD 120
I+ + D
Sbjct: 92 IEVLEAD 98
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 48.4 bits (115), Expect = 2e-06
Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 16/114 (14%)
Query: 211 PGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQ 270
VLD+G G G+ A KV ++ E ++ +A + V
Sbjct: 44 NQKTVLDLGCGFGWHCIYAAEH--GAKKVLGIDLSERMLTEAKR--------KTTSPVVC 93
Query: 271 FVDGDGREGHAAEGPYDVIYVGGAVHHYP------FKLMDQLKPGGVMWFTIGN 318
+ + Y+V+ A+H+ K+ LK G F++ +
Sbjct: 94 YEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEH 147
Score = 44.1 bits (104), Expect = 4e-05
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 10/90 (11%)
Query: 56 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIK 115
K VLD+G G G+ A K KV+GI+ +++ A +
Sbjct: 44 NQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRK--------TTSPVVC 93
Query: 116 FVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 145
+ ++ Y+++ ++ I
Sbjct: 94 YEQKAIEDIAIEPDAYNVVLSSLALHYIAS 123
Score = 35.7 bits (82), Expect = 0.023
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 366 QKYWYHPNGFYDDLDVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYA 425
+ G + H ++L D VLD+G G G+ A KV
Sbjct: 18 SQMPRSKEGLKAAGEWHEL-KKMLPD--FNQKTVLDLGCGFGWHCIYAAEH--GAKKVLG 72
Query: 426 VEHIEDLVAQANK 438
++ E ++ +A +
Sbjct: 73 IDLSERMLTEAKR 85
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 47.2 bits (113), Expect = 2e-06
Identities = 20/104 (19%), Positives = 45/104 (43%), Gaps = 15/104 (14%)
Query: 192 MSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQ 251
++ ++ A ++ L L V+D+G GSG +T +A VYA+++++ +
Sbjct: 18 ITKEEIRAVSIGKLN--LNKDDVVVDVGCGSGGMTVEIAKRC---KFVYAIDYLDGAIEV 72
Query: 252 ANKSMHTYYPNLMEGG--RVQFVDGDGREGHAAEGPYDVIYVGG 293
+ NL + Q + G + + ++ ++GG
Sbjct: 73 TKQ-------NLAKFNIKNCQIIKGRAEDV-LDKLEFNKAFIGG 108
Score = 41.8 bits (99), Expect = 1e-04
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 380 DVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
++ A ++ L L V+D+G GSG +T +A VYA+++++ + +
Sbjct: 22 EIRAVSIGKLN--LNKDDVVVDVGCGSGGMTVEIAKRC---KFVYAIDYLDGAIEVTKQ 75
Score = 39.5 bits (93), Expect = 8e-04
Identities = 18/96 (18%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
Query: 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS 103
A+ + L L + V+D+G G+G T + + V I+++ ++ N+
Sbjct: 25 AVSIGKL--NLNKDDVVVDVGCGSGGMT--VEIA-KRCKFVYAIDYLDGAIEVTKQNLAK 79
Query: 104 GNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGS 139
N + + + G LD+ ++ +GG+
Sbjct: 80 FNIK-----NCQIIKGRAEDV-LDKLEFNKAFIGGT 109
>3ll7_A Putative methyltransferase; methytransferase, structural genomics,
MCSG, PSI-2, protein initiative; HET: MSE; 1.80A
{Porphyromonas gingivalis}
Length = 410
Score = 48.6 bits (115), Expect = 2e-06
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 10/89 (11%)
Query: 51 SEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVK 110
S + EG KV+D+ G G L K + I IE + A HN+ +
Sbjct: 88 SRFIREGTKVVDLTGGLGIDFIALM---SKASQGIYIERNDETAVAARHNI---PLLLNE 141
Query: 111 DGRIKFVLGDGRKGYLDEAP---YDIIHV 136
+ + GD ++ YL D I+V
Sbjct: 142 GKDVNILTGDFKE-YLPLIKTFHPDYIYV 169
Score = 44.4 bits (104), Expect = 6e-05
Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 8/86 (9%)
Query: 208 YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGG 267
+++ G KV+D+ G G + + +E ++ A ++ EG
Sbjct: 90 FIREGTKVVDLTGGLGIDFIALMSKA---SQGIYIERNDETAVAARHNIPLLL---NEGK 143
Query: 268 RVQFVDGDGRE--GHAAEGPYDVIYV 291
V + GD +E D IYV
Sbjct: 144 DVNILTGDFKEYLPLIKTFHPDYIYV 169
Score = 31.7 bits (71), Expect = 0.58
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 392 YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQA 436
+++ G KV+D+ G G + + +E ++ A
Sbjct: 90 FIREGTKVVDLTGGLGIDFIALMSKA---SQGIYIERNDETAVAA 131
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 47.9 bits (114), Expect = 3e-06
Identities = 14/82 (17%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRV 269
K++D+ SG+G + ++ K+ VE E L A +S+ ++
Sbjct: 48 IRKGKIIDLCSGNGIIPLLLSTR--TKAKIVGVEIQERLADMAKRSVA----YNQLEDQI 101
Query: 270 QFVDGDGRE--GHAAEGPYDVI 289
+ ++ D ++ + D++
Sbjct: 102 EIIEYDLKKITDLIPKERADIV 123
Score = 44.4 bits (105), Expect = 3e-05
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS 103
A++L S K++D+ SGNG LL+ K++G+E +L A +V
Sbjct: 37 AVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLADMAKRSVAY 94
Query: 104 GNPEFVKDGRIKFVLGDGRK--GYLDEAPYDII 134
+ +I+ + D +K + + DI+
Sbjct: 95 NQ----LEDQIEIIEYDLKKITDLIPKERADIV 123
Score = 42.1 bits (99), Expect = 2e-04
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 394 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSM 440
K++D+ SG+G + ++ K+ VE E L A +S+
Sbjct: 48 IRKGKIIDLCSGNGIIPLLLSTR--TKAKIVGVEIQERLADMAKRSV 92
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics,
structural genomics consortium, SGC; HET: MTA; 1.82A
{Homo sapiens}
Length = 233
Score = 47.0 bits (111), Expect = 4e-06
Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 22/120 (18%)
Query: 208 YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEH----IEDLVAQANKSMHTYYPNL 263
++KPGAKVL +G+ SG + ++ +VGP G VYAVE DL+ A K N+
Sbjct: 74 HIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK-----RTNI 128
Query: 264 MEGGRVQFVDGDGR---EGHAAEGPYDVIYVGGAVHHYPFKLMDQ----LKPGGVMWFTI 316
+ V D R + DVI+ A + L+ GG +I
Sbjct: 129 I------PVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISI 182
Score = 47.0 bits (111), Expect = 5e-06
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 392 YLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEH----IEDLVAQANK 438
++KPGAKVL +G+ SG + ++ +VGP G VYAVE DL+ A K
Sbjct: 74 HIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK 124
Score = 34.7 bits (79), Expect = 0.047
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 39 SKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRAT 98
SK A++ + G KVL +G+ +G + ++ VG G V +E + +
Sbjct: 60 SKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLI 119
Query: 99 HNVISGNPEFVKDGRIKFVLGDGRK 123
+ K I V+ D R
Sbjct: 120 NLA-------KKRTNIIPVIEDARH 137
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 47.1 bits (112), Expect = 4e-06
Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 22/114 (19%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGG- 267
+ +VLDIG+G+G+ + V + V+ +++V A+ E G
Sbjct: 19 CRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASS-------FAQEKGV 68
Query: 268 -RVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQ--------LKPGGVM 312
V+F G + +D+I A HH+ + LK G
Sbjct: 69 ENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDV--RKAVREVARVLKQDGRF 120
Score = 39.0 bits (91), Expect = 0.002
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQA 436
+ +VLDIG+G+G+ + V + V+ +++V A
Sbjct: 19 CRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVA 59
Score = 39.0 bits (91), Expect = 0.002
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 112
E +VLDIG+G G+ + + IG++ ++V+ A+ E
Sbjct: 18 ECRAEHRVLDIGAGAGHTALAFS---PYVQECIGVDATKEMVEVASSFAQEKGVE----- 69
Query: 113 RIKFVLGD 120
++F G
Sbjct: 70 NVRFQQGT 77
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 46.7 bits (111), Expect = 5e-06
Identities = 31/190 (16%), Positives = 54/190 (28%), Gaps = 46/190 (24%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGR 268
L P + ++IG G+G + VE E + A K
Sbjct: 45 LLPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARKR------------G 85
Query: 269 VQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQ----------LKPGGVMWFTIGN 318
V + G + +D + + D LK GG + I +
Sbjct: 86 VFVLKGTAENLPLKDESFDFALMVTTICFVD----DPERALKEAYRILKKGGYLIVGIVD 141
Query: 319 AEEMLKNNRRTESNLAVVKAHKKDHGEWE------------EEFMGRLWRLPA-LASVEE 365
E L +V + + E + + L++ P+ L+ +E
Sbjct: 142 RESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTLFKHPSELSEIEP 201
Query: 366 QKYWYHPNGF 375
K Y F
Sbjct: 202 VKEGYGEGAF 211
Score = 38.6 bits (90), Expect = 0.002
Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 19/97 (19%)
Query: 49 DLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEF 108
+ L + ++IG G G F L IG+E ++ + A
Sbjct: 40 QAVKCLLPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARKR-------- 84
Query: 109 VKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 145
+ + G L + +D + +I + +
Sbjct: 85 ----GVFVLKGTAENLPLKDESFDFALMVTTICFVDD 117
Score = 35.6 bits (82), Expect = 0.021
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVG 418
L P + ++IG G+G + +G
Sbjct: 45 LLPEGRGVEIGVGTGRFAVPLKIKIG 70
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific;
structural genomics, PSI-biology; 2.55A
{Alicyclobacillus acidocaldarius subsp}
Length = 215
Score = 46.4 bits (111), Expect = 5e-06
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 16/96 (16%)
Query: 200 QALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIED--LVAQANKSMH 257
+A+ LK + G +V+D+G+GSG + +A P V AV+ D VA+ N
Sbjct: 20 EAIRFLKR-MPSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAERF 77
Query: 258 TYYPNLMEGGRVQFVDGDG----REGHAAEGPYDVI 289
G V + DG E P+ I
Sbjct: 78 --------GAVVDWAAADGIEWLIERAERGRPWHAI 105
Score = 36.7 bits (86), Expect = 0.008
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
Query: 384 QALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIED--LVAQANKSMH 441
+A+ LK + G +V+D+G+GSG + +A P V AV+ D VA+ N
Sbjct: 20 EAIRFLKR-MPSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAERF 77
Query: 442 TYYPNLMEGGRVQFTE 457
G V +
Sbjct: 78 --------GAVVDWAA 85
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 46.6 bits (110), Expect = 6e-06
Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 27/162 (16%)
Query: 179 YWD-IPQSL-----GFGSVMSSPKVHAQA-----LEILKDYLKPGAKVLDIGSGSGYLTA 227
YW IP ++ G+G + SS +++ + LD G+G G +T
Sbjct: 37 YWKQIPPTVDGMLGGYGHI-SSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITK 95
Query: 228 CMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYD 287
+ + +V V+ ED + QA + + ++ YD
Sbjct: 96 RLLLPLF--REVDMVDITEDFLVQAKTYLGEE-----GKRVRNYFCCGLQDFTPEPDSYD 148
Query: 288 VIYVGGAVHHYPF--------KLMDQLKPGGVMWFTIGNAEE 321
VI++ + H + L+P G++ A+E
Sbjct: 149 VIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE 190
Score = 31.6 bits (71), Expect = 0.43
Identities = 22/158 (13%), Positives = 42/158 (26%), Gaps = 27/158 (17%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 112
T LD G+G G T L + + +V ++ + +A +
Sbjct: 76 NKTGTSCALDCGAGIGRITKRLLLPLFR--EVDMVDITEDFLVQAKTYLGEEGKR----- 128
Query: 113 RIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEGVRFGHIASPKVESVMRSIDRR----- 167
+ + + YD+I + I GH+ + +R
Sbjct: 129 VRNYFCCGLQDFTPEPDSYDVIWIQWVI---------GHLTDQHLAEFLRRCKGSLRPNG 179
Query: 168 --RFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALE 203
+ D S SV V + +
Sbjct: 180 IIVIKDNMAQEGVILDDVDS----SVCRDLDVVRRIIC 213
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 46.3 bits (110), Expect = 7e-06
Identities = 19/137 (13%), Positives = 40/137 (29%), Gaps = 26/137 (18%)
Query: 202 LEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTG-KVYAVEHIEDLVAQANKSMHTYY 260
++++ + +LD+ G+G +E ED++ A K
Sbjct: 31 ADLVRSRTPEASSLLDVACGTGTHLEHFTKE----FGDTAGLELSEDMLTHARK------ 80
Query: 261 PNLMEGGRVQFVDGDGREGHAAEGPYDVIY-VGGAVHHYP--------FKLM-DQLKPGG 310
GD R+ + + + +V + + L+PGG
Sbjct: 81 ----RLPDATLHQGDMRDFR-LGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGG 135
Query: 311 VMWFTIGNAEEMLKNNR 327
V+ E +
Sbjct: 136 VVVVEPWWFPETFADGW 152
Score = 37.0 bits (86), Expect = 0.007
Identities = 14/90 (15%), Positives = 24/90 (26%), Gaps = 16/90 (17%)
Query: 46 VLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRATHNVISG 104
+ D + E +LD+ G G K G+E ++ A
Sbjct: 30 IADLVRSRTPEASSLLDVACGTGTHLEHFT----KEFGDTAGLELSEDMLTHARK----- 80
Query: 105 NPEFVKDGRIKFVLGDGRKGYLDEAPYDII 134
+ GD R L + +
Sbjct: 81 -----RLPDATLHQGDMRDFRLGR-KFSAV 104
Score = 34.7 bits (80), Expect = 0.048
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 11/57 (19%)
Query: 369 WYHPN--GFYDDL------DVHAQA---LEILKDYLKPGAKVLDIGSGSGYLTACMA 414
Y + YD D A+A ++++ + +LD+ G+G
Sbjct: 3 MYEVDHADVYDLFYLGRGKDYAAEASDIADLVRSRTPEASSLLDVACGTGTHLEHFT 59
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 46.3 bits (110), Expect = 7e-06
Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 21/135 (15%)
Query: 198 HAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTG-KVYAVEHIEDLVAQANKSM 256
+ + + + + ++PG ++ DIG G+G T +A +V V+ E+++ A +
Sbjct: 20 YPEWVAWVLEQVEPGKRIADIGCGTGTATLLLAD-----HYEVTGVDLSEEMLEIAQEKA 74
Query: 257 HTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYP--------FKLM-DQLK 307
V F D RE E + + ++++ F L
Sbjct: 75 ME------TNRHVDFWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLT 128
Query: 308 PGGVMWFTIGNAEEM 322
GG + F + + +M
Sbjct: 129 DGGKLLFDVHSPYKM 143
Score = 43.6 bits (103), Expect = 7e-05
Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 20/119 (16%)
Query: 47 LDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNP 106
+ + E++ GK++ DIG G G T LLA +V G++ ++++ A + N
Sbjct: 24 VAWVLEQVEPGKRIADIGCGTGTATLLLA----DHYEVTGVDLSEEMLEIAQEKAMETNR 79
Query: 107 EFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEGVRFGHIASPK-VESVMRSI 164
+ F + D R+ L E I + S ++ + V+ S
Sbjct: 80 ------HVDFWVQDMRELELPEPVDAITILCDS---------LNYLQTEADVKQTFDSA 123
Score = 36.6 bits (85), Expect = 0.011
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 368 YWYHPNGFYDDLDVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMA 414
Y Y D+ + + + + + ++PG ++ DIG G+G T +A
Sbjct: 9 YVYDE--LMQDVP-YPEWVAWVLEQVEPGKRIADIGCGTGTATLLLA 52
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM
MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB:
1nv9_A* 1vq1_A* 1sg9_A*
Length = 284
Score = 46.7 bits (112), Expect = 7e-06
Identities = 27/147 (18%), Positives = 47/147 (31%), Gaps = 39/147 (26%)
Query: 200 QALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIED--LVAQANKSMH 257
ALE+++ V DIG+GSG + +A V+A + +A+ N H
Sbjct: 114 LALELIRK--YGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERH 169
Query: 258 TYYPNLMEGGRVQFVDGDGREGHAAE-GPYDVI-----YVGGAVHHYP---F-------- 300
+ R G+ E + ++I YV + H F
Sbjct: 170 ----GV--SDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFG 223
Query: 301 ---------KLMDQ-LKPGGVMWFTIG 317
+ + G ++ IG
Sbjct: 224 GEDGLDFYREFFGRYDTSGKIVLMEIG 250
Score = 38.3 bits (90), Expect = 0.004
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 384 QALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIED--LVAQANKSMH 441
ALE+++ V DIG+GSG + +A V+A + +A+ N H
Sbjct: 114 LALELIRK--YGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERH 169
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 45.6 bits (108), Expect = 8e-06
Identities = 23/121 (19%), Positives = 41/121 (33%), Gaps = 20/121 (16%)
Query: 211 PGAKVLDIGSGSGYLTACMAHMVGPTG-KVYAVEHIEDLVAQANKSMHTYYPNLMEGGRV 269
P K+L + G G +A + G +V AV+ +A+A + +G ++
Sbjct: 29 PQGKILCLAEGEGRNACFLASL----GYEVTAVDQSSVGLAKAKQLAQE------KGVKI 78
Query: 270 QFVDGDGREGHAAEGPYDVIYVGGAVHHYPF------KLMDQLKPGGVM---WFTIGNAE 320
V + + ++ I K+ LKPGGV F +
Sbjct: 79 TTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQ 138
Query: 321 E 321
Sbjct: 139 Y 139
Score = 29.1 bits (65), Expect = 2.6
Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 11/83 (13%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRATHNVISGNPEFVKD 111
K+L + G G LA G +V ++ + +A
Sbjct: 26 NQIPQGKILCLAEGEGRNACFLA----SLGYEVTAVDQSSVGLAKAKQLAQEKGV----- 76
Query: 112 GRIKFVLGDGRKGYLDEAPYDII 134
+I V + + ++ I
Sbjct: 77 -KITTVQSNLADFDIVADAWEGI 98
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 46.3 bits (110), Expect = 8e-06
Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 16/112 (14%)
Query: 211 PGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQ 270
G +++D+G G G+ V ++ E ++A+A +
Sbjct: 43 GGLRIVDLGCGFGWFCRWAHEH--GASYVLGLDLSEKMLARARA--------AGPDTGIT 92
Query: 271 FVDGDGREGHAAEGPYDVIYVGGAVHHYP--FKLMDQ----LKPGGVMWFTI 316
+ D + H + +D+ Y A+H+ +L L PGG F+
Sbjct: 93 YERADLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFST 144
Score = 41.7 bits (98), Expect = 2e-04
Identities = 16/90 (17%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 56 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIK 115
G +++D+G G G+F V+G++ +++ RA D I
Sbjct: 43 GGLRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLARAR--------AAGPDTGIT 92
Query: 116 FVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 145
+ D K +L + +D+ + ++ + +
Sbjct: 93 YERADLDKLHLPQDSFDLAYSSLALHYVED 122
Score = 31.7 bits (72), Expect = 0.39
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 395 PGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
G +++D+G G G+ V ++ E ++A+A
Sbjct: 43 GGLRIVDLGCGFGWFCRWAHEH--GASYVLGLDLSEKMLARARA 84
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 1e-05
Identities = 49/283 (17%), Positives = 83/283 (29%), Gaps = 117/283 (41%)
Query: 10 TTWRPYANCITN-------IGYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLD 62
+W + + IG + P +++ D S E EG
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTS------LPPSILED--SLENNEGVP--- 335
Query: 63 IGSGNGYFTALLAWCVGKTGKVIG--IE----HIPQ-------LVQRATHNVISGNPE-- 107
+ +L+ T + + + H+P LV A + V+SG P+
Sbjct: 336 --------SPMLS-ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL 386
Query: 108 ----------FVKDG----RIKFVLGDGRK-----GYLD-EAPYDIIH---VGGSIEDIP 144
G RI F RK +L +P+ H + + + I
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIPF---SERKLKFSNRFLPVASPF---HSHLLVPASDLIN 440
Query: 145 EGVRFGHIA-SPK-----VESV-----MR----SIDRRRFIERPIMNNP-YWDIPQSLGF 188
+ + +++ + K V +R SI R I I+ P W+
Sbjct: 441 KDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER--IVDCIIRLPVKWE------- 491
Query: 189 GSVMSSPKVHAQALEILKDYLKPGAKVLDIG----SGSGYLTA 227
+ H +LD G SG G LT
Sbjct: 492 -TTTQFKATH----------------ILDFGPGGASGLGVLTH 517
Score = 43.1 bits (101), Expect = 2e-04
Identities = 56/369 (15%), Positives = 109/369 (29%), Gaps = 116/369 (31%)
Query: 127 DEAPYDIIHVGGSIEDIPEGVRF-GHIASPKVESVMRSIDR------RRFIERPIM-NNP 178
D+ P + G +F G+++S S + D+ F E + N
Sbjct: 51 DDEPTTPAELVG---------KFLGYVSSLVEPSKVGQFDQVLNLCLTEF-ENCYLEGN- 99
Query: 179 YWDIPQSLGFGSVMSSPKVHAQALEILKDYLKPGAKVL-----DIGSGSGYLTACMAHMV 233
DI +L + + + E++K+Y+ A+++ D S S A
Sbjct: 100 --DI-HALAAKLLQENDTTLVKTKELIKNYIT--ARIMAKRPFDKKSNSALFRAVGE--- 151
Query: 234 GPTGKVYAV------------E----------HIEDLVAQANKSMHTYYPNLMEGGRVQF 271
++ A+ E + DL+ + +++ ++ +V F
Sbjct: 152 -GNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV-F 209
Query: 272 VDG-DGRE--GHAAEGPYDVIYVGGAVHHYPFKLMDQLKPGGVMWFTIGNAEEMLKNNRR 328
G + E + + P D Y+ P + QL
Sbjct: 210 TQGLNILEWLENPSNTP-DKDYLLSIPISCPLIGVIQL---------------------- 246
Query: 329 TESNLAVV-KAHKKDHGEWEEEFMGRLWRLPALAS---VEEQKYWYHPNGFYDDLDVHAQ 384
++ V K GE G L + + E W F+ + +
Sbjct: 247 --AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW---ESFFVSVR---K 298
Query: 385 ALEIL------------KDYLKPG--AKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIE 430
A+ +L L P L+ G + M+ + E ++
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV------PSPMLSISN--LTQEQVQ 350
Query: 431 DLVAQANKS 439
D V + N
Sbjct: 351 DYVNKTNSH 359
Score = 41.6 bits (97), Expect = 6e-04
Identities = 64/423 (15%), Positives = 120/423 (28%), Gaps = 149/423 (35%)
Query: 130 PYDIIHVGGSIE---DIPEGVRFGHIASPKVESVMRSIDRRRF---IERPIMNNPYWDIP 183
P + H GS+E +P + S ++ +F + P D P
Sbjct: 8 PLTLSH--GSLEHVLLVPTAS---FFIA----SQLQE----QFNKILPEPTEGFAADDEP 54
Query: 184 QS--------LGFGSVMSSPKVHAQALEILK--------DYLKPGAKVLDIGSGSGYLTA 227
+ LG+ S + P Q ++L YL+ G DI
Sbjct: 55 TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE-GN---DI--------- 101
Query: 228 CMAHMVGPTGKVYAVEHIEDLVAQANKSM-HTYYPNLMEGGRVQFVDGDGREGHAAEGPY 286
H + + D K + Y + R P+
Sbjct: 102 ---HAL-----AAKLLQENDTTLVKTKELIKNYITARIMAKR----------------PF 137
Query: 287 DVIYVGGAVHHYPFKLMDQLKPGGVMWFTI----GNAEEMLKNNRRTESNLAVV-KAHKK 341
D L + G I GN ++ + E L + + +
Sbjct: 138 D--------KKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE-----E--LRDLYQTYHV 182
Query: 342 DHGEWEEEFMGRLWRLPALASVEEQKYWYHPNGFYDDLDVHAQALEIL-----KDYLK-- 394
G+ + L L + + + + + G ++ + LE KDYL
Sbjct: 183 LVGDLIKFSAETLSEL--IRTTLDAEKVF-TQGL----NIL-EWLENPSNTPDKDYLLSI 234
Query: 395 ----PGAKVLDIGSGSGYLTACMAHMVGPTGKVY-----AVEHIEDLVA----QANKSMH 441
P V+ + Y+ P G++ A H + LV S
Sbjct: 235 PISCPLIGVIQLAH---YVVTAKLLGFTP-GELRSYLKGATGHSQGLVTAVAIAETDSWE 290
Query: 442 TYYPNLME--------GGRVQ----FTEMAEKVMQLRV--------HMMS---FTLEE-Q 477
+++ ++ + G R T + +++ + M+S T E+ Q
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 478 SII 480
+
Sbjct: 351 DYV 353
Score = 38.1 bits (88), Expect = 0.007
Identities = 67/428 (15%), Positives = 117/428 (27%), Gaps = 162/428 (37%)
Query: 44 AMVLDDLSEELTEGKKV----LDIGS---------GNGYF-TALLAWCVGKTGKVIGIEH 89
A L +L + +KV L+I Y + ++ +IG+
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC------PLIGVI- 244
Query: 90 IPQLVQ-RATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEGVR 148
QL T ++ P ++ +K G +G + I S E
Sbjct: 245 --QLAHYVVTAKLLGFTPGELRS-YLKGATGHS-QGLVTAV---AIAETDSWES------ 291
Query: 149 FGHIASPKVESVMRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKDY 208
F R+ I ++ ++ +G + P + IL+D
Sbjct: 292 FFVSV-------------RKAIT--VL---FF-----IGVRCYEAYPNT-SLPPSILEDS 327
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYP------N 262
L+ V + M+ + E ++D V + N + N
Sbjct: 328 LENNEGV-------------PSPMLSISN--LTQEQVQDYVNKTNSHLPAGKQVEISLVN 372
Query: 263 LMEGGRVQFV-----------DGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQLKPGGV 311
G V + R+ A G D PF + K
Sbjct: 373 ----GAKNLVVSGPPQSLYGLNLTLRKAKAPSGL-D-------QSRIPF---SERKLKFS 417
Query: 312 MWF-TIG---------NAEEMLKNNRRTESNLAVVKAHKKDHGEWEEEFMGRLWRLPALA 361
F + A +++ KD + F + ++P
Sbjct: 418 NRFLPVASPFHSHLLVPASDLI----------------NKDLVKNNVSFNAKDIQIP--- 458
Query: 362 SVEEQKYWYHP-NGFYDDL-DVHAQALEILKDYL-----------KPGA-KVLDIG---- 403
V Y +G DL + E + D + + A +LD G
Sbjct: 459 -V------YDTFDG--SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGA 509
Query: 404 SGSGYLTA 411
SG G LT
Sbjct: 510 SGLGVLTH 517
Score = 28.9 bits (64), Expect = 5.5
Identities = 34/195 (17%), Positives = 66/195 (33%), Gaps = 69/195 (35%)
Query: 34 DNTKFSKFQQAMVLDDLS--EEL-TEGKKVLDIGSGNGYF--------TALLAWCVGKTG 82
T+F+ Q A+ L + + E+L ++G D F AL +
Sbjct: 1727 SATQFT--QPALTLMEKAAFEDLKSKGLIPAD-----ATFAGHSLGEYAALAS-----LA 1774
Query: 83 KVIGIEHIPQLV-QRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVG-GSI 140
V+ IE + ++V R G + + L + Y +I + G +
Sbjct: 1775 DVMSIESLVEVVFYR---------------G--MTMQVAVPRDELGRSNYGMIAINPGRV 1817
Query: 141 EDIPEGVRFGHIASPKVESVMRSIDRR--RFIERPIMN-NPYWDIPQSLGFGS--VMSSP 195
F A ++ V+ + +R +E I+N N + V +
Sbjct: 1818 -----AASFSQEA---LQYVVERVGKRTGWLVE--IVNYN----VE-----NQQYVAAG- 1857
Query: 196 KVHAQALEILKDYLK 210
+AL+ + + L
Sbjct: 1858 --DLRALDTVTNVLN 1870
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics,
structural genomics consortium; HET: SAH; 1.86A {Homo
sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A*
1p1c_A* 1p1b_A* 1khh_A*
Length = 236
Score = 45.6 bits (107), Expect = 1e-05
Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 33/182 (18%)
Query: 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRV 269
G +VL++G G + + P + + +E D V Q + + +V
Sbjct: 59 SKGGRVLEVGFGMAIAASKVQEA--PIDEHWIIE-CNDGVFQRLRDWAPRQTH-----KV 110
Query: 270 QFVDGDGREGHA--AEGPYDVIYVGGAVHHYPFKLMDQ-----------LKPGGVM-WFT 315
+ G + +G +D I Q LKPGGV+ +
Sbjct: 111 IPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170
Query: 316 IGNAEEMLKN--NRRTESNLAVVKAHKKDHG---EWEEEFMGRLWRLPALASVEEQKYWY 370
+ + E++K+ + T + G E + AL + +Y+
Sbjct: 171 LTSWGELMKSKYSDITIMFEETQVPALLEAGFRRENIR------TEVMALVPPADCRYYA 224
Query: 371 HP 372
P
Sbjct: 225 FP 226
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 45.2 bits (107), Expect = 1e-05
Identities = 24/128 (18%), Positives = 40/128 (31%), Gaps = 21/128 (16%)
Query: 196 KVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTG-KVYAVEHIEDLVAQANK 254
+ H++ LE +K + K LD+G G+G + +A G V A + +A +
Sbjct: 19 RTHSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN----GYDVDAWDKNAMSIANVER 72
Query: 255 SMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQ--------L 306
+ D + YD I + K +
Sbjct: 73 IKSIE-----NLDNLHTRVVDLNN-LTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCT 126
Query: 307 KPGGVMWF 314
KPGG
Sbjct: 127 KPGGYNLI 134
Score = 37.8 bits (88), Expect = 0.004
Identities = 18/115 (15%), Positives = 35/115 (30%), Gaps = 20/115 (17%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRATHNVISGNPEFVKD 111
++ + K LD+G GNG + LA G V + + N +
Sbjct: 29 KVVKPGKTLDLGCGNGRNSLYLA----ANGYDVDAWDKNAMSIANVERIKSIENLD---- 80
Query: 112 GRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEGVRFGHIASPKVESVMRSIDR 166
+ + D D YD I + + + ++ ++ R
Sbjct: 81 -NLHTRVVDLNNLTFDR-QYDFILSTVV---------LMFLEAKTIPGLIANMQR 124
Score = 34.8 bits (80), Expect = 0.038
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 362 SVEEQKYWYHPNGFYDDLDVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMA 414
+ ++ Y+ Y+ H++ LE +K + K LD+G G+G + +A
Sbjct: 4 VIRDENYFTDK---YELTRTHSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLA 51
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 46.0 bits (109), Expect = 1e-05
Identities = 21/197 (10%), Positives = 51/197 (25%), Gaps = 44/197 (22%)
Query: 148 RFGHIASPKVESVMRSIDR------RRFIERPIMNNPYWDI----------PQSLGFGSV 191
+ A+P E + R + R + + + ++ I P+ +
Sbjct: 33 KIPAPATPYQEDIARYWNNEARPVNLRLGDVDGLYHHHYGIGPVDRAALGDPEHSEYEKK 92
Query: 192 MSSPKVHAQA------LEILKDYLKPGAKVLDIGSGSGYLTACMA-----HMVGPTGKVY 240
+ + ++ ++ L P ++D G G G + G T
Sbjct: 93 VIAELHRLESAQAEFLMDHLGQ-AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAA 151
Query: 241 AVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPF 300
+ + V+ + + +G + + +
Sbjct: 152 QADFGNRRARELRID-----------DHVRSRVCNMLDTPFDKGAVTASWNNESTMYVDL 200
Query: 301 -----KLMDQLKPGGVM 312
+ LK GG
Sbjct: 201 HDLFSEHSRFLKVGGRY 217
Score = 37.5 bits (87), Expect = 0.007
Identities = 14/102 (13%), Positives = 29/102 (28%), Gaps = 14/102 (13%)
Query: 42 QQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRATHN 100
Q ++D L + ++D G G G + + G +V G+
Sbjct: 104 QAEFLMDHLGQ-AGPDDTLVDAGCGRGGSMVMAH---RRFGSRVEGVTLSAAQADFGNRR 159
Query: 101 VISGNPEFVKDGRIKFVLGDGRKGYLD-EAPYDIIHVGGSIE 141
D ++ + + LD + + E
Sbjct: 160 ARELRI----DDHVRSRVCN----MLDTPFDKGAVTASWNNE 193
Score = 31.4 bits (71), Expect = 0.65
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 6/43 (13%)
Query: 370 YHPNGFYDDLDVHAQA-----LEILKDYLKPGAKVLDIGSGSG 407
+ +L A ++ L P ++D G G G
Sbjct: 88 EYEKKVIAELHRLESAQAEFLMDHLGQ-AGPDDTLVDAGCGRG 129
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 45.8 bits (109), Expect = 2e-05
Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 24/126 (19%)
Query: 203 EILKDYL--KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYY 260
++L L KVLD+G G+G L+ A P ++ + V +
Sbjct: 186 QLLLSTLTPHTKGKVLDVGCGAGVLSVAFA-RHSPKIRLTLCDVSAPAVEASRA------ 238
Query: 261 PNLME-GGRVQFVDGDGREGHAAEGPYDVIY------VGGAVHHYPFKLM-----DQLKP 308
L G + + +G +D+I G + + L
Sbjct: 239 -TLAANGVEGEVFASNVFSE--VKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNS 295
Query: 309 GGVMWF 314
GG +
Sbjct: 296 GGELRI 301
Score = 43.5 bits (103), Expect = 9e-05
Identities = 27/135 (20%), Positives = 45/135 (33%), Gaps = 14/135 (10%)
Query: 302 LMDQLKPGGVMWFTIGNAEE----MLKNNRRTESNLAVVKAHKKD--HGEWEEEFMGRLW 355
L+ L G ++ G + V A + G E++ +
Sbjct: 98 LLSLLPVGTDIFVV-GENRSGVRSAEQMLADYAPLNKVDSARRCGLYFGRLEKQPVFDAE 156
Query: 356 RLPALASVEEQKYWYHPNGF-YDDLDVHAQALEILKDYL--KPGAKVLDIGSGSGYLTAC 412
+ SV+ P F D LD ++L L KVLD+G G+G L+
Sbjct: 157 KFWGEYSVDGLTVKTLPGVFSRDGLD---VGSQLLLSTLTPHTKGKVLDVGCGAGVLSVA 213
Query: 413 MAHMVGPTGKVYAVE 427
A P ++ +
Sbjct: 214 FA-RHSPKIRLTLCD 227
>1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics
hypothetical protein, structure 2 function project, S2F,
TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP:
c.66.1.14
Length = 244
Score = 45.3 bits (106), Expect = 2e-05
Identities = 29/209 (13%), Positives = 73/209 (34%), Gaps = 22/209 (10%)
Query: 190 SVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLT-ACMAHMVGPTGKVYAVEHIEDL 248
SV + + + ++ + V D+G G T + ++ P K+ +++ + +
Sbjct: 37 SVPGYSNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPM 96
Query: 249 VAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPF-------- 300
V + + + Y+ + V+ + D R ++ + + P
Sbjct: 97 VERCRQHIAAYHSEI----PVEILCNDIRHVE--IKNASMVILNFTLQFLPPEDRIALLT 150
Query: 301 KLMDQLKPGGVMWFTIGNAEEMLKNNRRTESNLAVVKAHKKDHGEWEEEFMGRLWRLP-- 358
K+ + L P + + + ++ + + + K+ +G E E + L
Sbjct: 151 KIYEGLNPN---GVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENV 207
Query: 359 -ALASVEEQKYWYHPNGFYDDLDVHAQAL 386
S+E K GF +++ Q
Sbjct: 208 MRTDSIETHKVRLKNVGF-SQVELWFQCF 235
Score = 33.3 bits (75), Expect = 0.13
Identities = 10/75 (13%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 375 FYDDLDVHAQALEILKDYLKPGAKVLDIGSGSGYLT-ACMAHMVGPTGKVYAVEHIEDLV 433
Y ++ + + ++ + V D+G G T + ++ P K+ +++ + +V
Sbjct: 40 GYSNI--ITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMV 97
Query: 434 AQANKSMHTYYPNLM 448
+ + + Y+ +
Sbjct: 98 ERCRQHIAAYHSEIP 112
Score = 31.4 bits (70), Expect = 0.55
Identities = 24/175 (13%), Positives = 60/175 (34%), Gaps = 15/175 (8%)
Query: 43 QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRATHNV 101
+ +T V D+G G T + + K+IGI++ +V+R ++
Sbjct: 45 ITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHI 104
Query: 102 ISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVG---GSIEDIPEGVR--FGHIASPK 156
+ + E ++ + D R + A I++ ED + + +
Sbjct: 105 AAYHSEI----PVEILCNDIRHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNG 160
Query: 157 VESVMRSIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKDYLKP 211
V + ++ + + ++ G+ S +Q L++ ++
Sbjct: 161 VLVLSEKFRFEDTKINHLLIDLHHQFKRANGY-----SELEVSQKRTALENVMRT 210
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase,
usnRNA, snoRNA, telomerase, cytoplasm,
methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo
sapiens} PDB: 3egi_A*
Length = 241
Score = 44.6 bits (105), Expect = 2e-05
Identities = 21/126 (16%), Positives = 45/126 (35%), Gaps = 12/126 (9%)
Query: 166 RRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYL 225
+R+ ++ + + SV A + + V+D G G
Sbjct: 37 AQRYRLFSRFDDGIKLDREG--WFSVTPEKIAEHIAGRVSQ--SFKCDVVVDAFCGVGGN 92
Query: 226 TACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGP 285
T A +V A++ +A A + Y + + +++F+ GD A+
Sbjct: 93 TIQFALTGM---RVIAIDIDPVKIALARNNAEVY--GIAD--KIEFICGDFLL-LASFLK 144
Query: 286 YDVIYV 291
DV+++
Sbjct: 145 ADVVFL 150
Score = 41.9 bits (98), Expect = 2e-04
Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 25/121 (20%)
Query: 33 QDNTKFSKFQQAMVLDDLS-----------------EELTEGKKVLDIGSGNGYFTALLA 75
Q FS+F + LD + + V+D G G T A
Sbjct: 38 QRYRLFSRFDDGIKLDREGWFSVTPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFA 97
Query: 76 WCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIH 135
+VI I+ P + A +N + D +I+F+ GD D++
Sbjct: 98 ---LTGMRVIAIDIDPVKIALARNNAEVYG---IAD-KIEFICGDFLL-LASFLKADVVF 149
Query: 136 V 136
+
Sbjct: 150 L 150
Score = 34.2 bits (78), Expect = 0.068
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 8/85 (9%)
Query: 362 SVEEQKYWYHPNGFY---DDLDVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVG 418
S + G++ + A + + V+D G G T A
Sbjct: 44 SRFDDGIKLDREGWFSVTPEKIAEHIAGRVSQ--SFKCDVVVDAFCGVGGNTIQFALTGM 101
Query: 419 PTGKVYAVEHIEDLVAQANKSMHTY 443
+V A++ +A A + Y
Sbjct: 102 ---RVIAIDIDPVKIALARNNAEVY 123
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 44.4 bits (105), Expect = 3e-05
Identities = 26/141 (18%), Positives = 46/141 (32%), Gaps = 29/141 (20%)
Query: 191 VMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVA 250
V A+ LK L PG +L++G+G+GY + + + VE E ++A
Sbjct: 16 TPLGAYVIAEEERALKGLLPPGESLLEVGAGTGYWLRRLPY-----PQKVGVEPSEAMLA 70
Query: 251 QANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQ----- 305
+ +V G +DV+ + + D
Sbjct: 71 VGRR----------RAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVE----DVERVLL 116
Query: 306 -----LKPGGVMWFTIGNAEE 321
L+PGG + + A
Sbjct: 117 EARRVLRPGGALVVGVLEALS 137
Score = 35.9 bits (83), Expect = 0.016
Identities = 15/96 (15%), Positives = 36/96 (37%), Gaps = 15/96 (15%)
Query: 50 LSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFV 109
L L G+ +L++G+G GY+ L + +G+E ++
Sbjct: 30 LKGLLPPGESLLEVGAGTGYWLRRLP-----YPQKVGVEPSEAMLAVGRR---------- 74
Query: 110 KDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 145
+ +V G +D++ + ++E + +
Sbjct: 75 RAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVED 110
Score = 35.2 bits (81), Expect = 0.029
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 381 VHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQA 436
V A+ LK L PG +L++G+G+GY + + + VE E ++A
Sbjct: 22 VIAEEERALKGLLPPGESLLEVGAGTGYWLRRLPY-----PQKVGVEPSEAMLAVG 72
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 44.4 bits (105), Expect = 3e-05
Identities = 27/142 (19%), Positives = 55/142 (38%), Gaps = 22/142 (15%)
Query: 202 LEILKDY-LKPGAKVLDIGSGSGYLTACMAHMVGPTG-KVYAVEHIEDLVAQANKSMHTY 259
EI K+ + +VLD+ G+G T +A G +V ++ E+++ A +
Sbjct: 31 EEIFKEDAKREVRRVLDLACGTGIPTLELAER----GYEVVGLDLHEEMLRVARRKAKE- 85
Query: 260 YPNLMEGGRVQFVDGDGREGHAAEGPYDVIY-VGGAVHHYP-------FKLM-DQLKPGG 310
+++F+ GD E A + +D + + ++ F + + LKPGG
Sbjct: 86 -----RNLKIEFLQGDVLE-IAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGG 139
Query: 311 VMWFTIGNAEEMLKNNRRTESN 332
V ++ +
Sbjct: 140 VFITDFPCWFYGGRDGPVVWNE 161
Score = 39.4 bits (92), Expect = 0.001
Identities = 19/113 (16%), Positives = 42/113 (37%), Gaps = 22/113 (19%)
Query: 54 LTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRATHNVISGNPEFVKDG 112
E ++VLD+ G G T LA + G +V+G++ ++++ A N
Sbjct: 39 KREVRRVLDLACGTGIPTLELA----ERGYEVVGLDLHEEMLRVARRKAKERNL------ 88
Query: 113 RIKFVLGDGRKGYLDEAPYD-IIHVGGSIEDIPEGVRFGHIASPKVESVMRSI 164
+I+F+ GD + +D + + + + + +
Sbjct: 89 KIEFLQGDVLEIAFKN-EFDAVTMFFST---------IMYFDEEDLRKLFSKV 131
Score = 30.6 bits (69), Expect = 0.96
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 368 YWYHPNGFYDDLDVHAQA-----LEILKDY-LKPGAKVLDIGSGSGYLTACMA 414
+Y Y +A EI K+ + +VLD+ G+G T +A
Sbjct: 10 EYYDT--IYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELA 60
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 44.4 bits (105), Expect = 3e-05
Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 27/135 (20%)
Query: 190 SVMSSPKVHAQA--LEILKDYL--KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHI 245
++S +HA+ L L K +VLD+ +G G++ A V KV A +
Sbjct: 13 MYVTSQ-IHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLT 68
Query: 246 EDLVAQANKSMHTYYPNLMEGG--RVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLM 303
ED++ A + G +V++V GD + + + ++ A HH+P
Sbjct: 69 EDILKVARA-------FIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNP-- 119
Query: 304 DQ--------LKPGG 310
LK GG
Sbjct: 120 ASFVSEAYRVLKKGG 134
Score = 39.0 bits (91), Expect = 0.002
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 365 EQKYWYHPNGFYDDLDVHAQA--LEILKDYL--KPGAKVLDIGSGSGYLTACMAHMVGPT 420
K +H + Y +HA+ L L K +VLD+ +G G++ A V
Sbjct: 3 SDKIHHHHHHMYVTSQIHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV--- 59
Query: 421 GKVYAVEHIEDLVAQA 436
KV A + ED++ A
Sbjct: 60 KKVVAFDLTEDILKVA 75
Score = 35.2 bits (81), Expect = 0.030
Identities = 15/99 (15%), Positives = 36/99 (36%), Gaps = 11/99 (11%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 112
L ++VLD+ +G G+ A KV+ + +++ A +
Sbjct: 34 ALKGNEEVLDVATGGGHVANAFA---PFVKKVVAFDLTEDILKVARAFIEGN-----GHQ 85
Query: 113 RIKFVLGDGRKGYLDEAPYDIIHVGGSI---EDIPEGVR 148
++++V GD + + + I+ + + V
Sbjct: 86 QVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVS 124
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 43.9 bits (104), Expect = 5e-05
Identities = 23/135 (17%), Positives = 52/135 (38%), Gaps = 22/135 (16%)
Query: 202 LEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTG-KVYAVEHIEDLVAQANKSMHTYY 260
+E + LD+ G+G LT + +AV+ ++++++A +
Sbjct: 28 IEKCVENNLVFDDYLDLACGTGNLTENLCPK----FKNTWAVDLSQEMLSEAENKFRS-- 81
Query: 261 PNLMEGGRVQFVDGDGREGHAAEGPYDVIY-VGGAVHHYP--------FKLM-DQLKPGG 310
+G + + D + +D+I + ++ FK + + LK GG
Sbjct: 82 ----QGLKPRLACQDISNLN-INRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGG 136
Query: 311 VMWFTIGNAEEMLKN 325
V F I + ++ +
Sbjct: 137 VFIFDINSYYKLSQV 151
Score = 40.5 bits (95), Expect = 7e-04
Identities = 13/96 (13%), Positives = 29/96 (30%), Gaps = 12/96 (12%)
Query: 40 KFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRAT 98
K +++ E LD+ G G T L ++ +++ A
Sbjct: 21 KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLC----PKFKNTWAVDLSQEMLSEAE 76
Query: 99 HNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 134
+ S + + D ++ +D+I
Sbjct: 77 NKFRSQGL------KPRLACQDISNLNINR-KFDLI 105
Score = 32.8 bits (75), Expect = 0.19
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 375 FYDDLDVHAQA---LEILKDYLKPGAKVLDIGSGSGYLTACMA 414
D+D + +E + LD+ G+G LT +
Sbjct: 14 IRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLC 56
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 43.7 bits (103), Expect = 7e-05
Identities = 19/142 (13%), Positives = 41/142 (28%), Gaps = 26/142 (18%)
Query: 202 LEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTG-KVYAVEHIEDLVAQANKSMHTYY 260
+++ + A +LD+ G+G +A V +E D++A A +
Sbjct: 41 AALVRRHSPKAASLLDVACGTGMHLRHLADS----FGTVEGLELSADMLAIARR------ 90
Query: 261 PNLMEGGRVQFVDGDGREGHAAEGPYDVIY-VGGAVHHYP--------FKLM-DQLKPGG 310
GD R+ + + + + ++ H + + P G
Sbjct: 91 ----RNPDAVLHHGDMRD-FSLGRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDG 145
Query: 311 VMWFTIGNAEEMLKNNRRTESN 332
V+ E
Sbjct: 146 VVVVEPWWFPENFTPGYVAAGT 167
Score = 35.2 bits (81), Expect = 0.037
Identities = 17/104 (16%), Positives = 31/104 (29%), Gaps = 16/104 (15%)
Query: 32 FQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHI 90
Q K + A + + + +LD+ G G LA + V G+E
Sbjct: 26 HQGKGKDYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLA----DSFGTVEGLELS 81
Query: 91 PQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 134
++ A ++ GD R L + +
Sbjct: 82 ADMLAIARR----------RNPDAVLHHGDMRDFSLGR-RFSAV 114
Score = 32.9 bits (75), Expect = 0.18
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 9/49 (18%)
Query: 375 FYDDL------DVHAQA---LEILKDYLKPGAKVLDIGSGSGYLTACMA 414
YD + D H +A +++ + A +LD+ G+G +A
Sbjct: 21 LYDLVHQGKGKDYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLA 69
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification
enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus
jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Length = 336
Score = 43.7 bits (103), Expect = 8e-05
Identities = 28/153 (18%), Positives = 64/153 (41%), Gaps = 15/153 (9%)
Query: 191 VMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVA 250
V SP++ + I+K + V+D+ +G G + + K+YA++ +
Sbjct: 176 VYFSPRLGGERARIMK-KVSLNDVVVDMFAGVGPFSIACKNAK----KIYAIDINPHAIE 230
Query: 251 QANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVG--GAVHHYPFKLMDQLKP 308
K++ N +E ++ + D RE + + + + H + K +D ++
Sbjct: 231 LLKKNIKL---NKLE-HKIIPILSDVRE---VDVKGNRVIMNLPKFAHKFIDKALDIVEE 283
Query: 309 GGVM-WFTIGNAEEMLKNNRRTESNLAVVKAHK 340
GGV+ ++TIG + + + V++
Sbjct: 284 GGVIHYYTIGKDFDKAIKLFEKKCDCEVLEKRI 316
Score = 35.2 bits (81), Expect = 0.046
Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 50 LSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFV 109
+ ++++ V+D+ +G G F+ K+ I+ P ++ N+ E
Sbjct: 189 IMKKVSLNDVVVDMFAGVGPFSIACK----NAKKIYAIDINPHAIELLKKNIKLNKLE-- 242
Query: 110 KDGRIKFVLGDGRK 123
+I +L D R+
Sbjct: 243 --HKIIPILSDVRE 254
Score = 31.0 bits (70), Expect = 0.99
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Query: 358 PALASVEEQ--KYWYHPNGFYDDLDVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAH 415
L +E + W Y + + I+K + V+D+ +G G + +
Sbjct: 157 RTLTIHKENGYRLWVDIAKVYFSPRLGGERARIMK-KVSLNDVVVDMFAGVGPFSIACKN 215
Query: 416 MVGPTGKVYAVE 427
K+YA++
Sbjct: 216 AK----KIYAID 223
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 43.5 bits (102), Expect = 8e-05
Identities = 22/139 (15%), Positives = 43/139 (30%), Gaps = 21/139 (15%)
Query: 197 VHAQALEILKD--YLKPGAKVLDIGSGSGYLTACM-----AHMVGPTGKVYAVEHIEDLV 249
+ + I+ K K+L IG G+G + + A G VE + +
Sbjct: 36 MDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQI 95
Query: 250 AQANKSMHTYYPNLMEGGRVQFVDGDGREGHA------AEGPYDVIYVGGAVHHYP---- 299
A+ K + NL E + + E + +D I++ +++
Sbjct: 96 AKY-KELVAKTSNL-ENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPA 153
Query: 300 --FKLMDQLKPGGVMWFTI 316
L M +
Sbjct: 154 TLKFFHSLLGTNAKMLIIV 172
Score = 36.2 bits (83), Expect = 0.015
Identities = 18/129 (13%), Positives = 37/129 (28%), Gaps = 17/129 (13%)
Query: 32 FQDNTKFSKFQQAMVLDDLSEELT------EGKKVLDIGSGNGYFT-----ALLAWCVGK 80
F +++ + Q + L + K+L IG G G + A G
Sbjct: 22 FLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGV 81
Query: 81 TGKVIGIEHIPQLVQRATHNVIS----GNPEF-VKDGRIKFVLGDGRKGYLDEAPYDIIH 135
+E + + + V N +F + + +D IH
Sbjct: 82 CINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQ-KWDFIH 140
Query: 136 VGGSIEDIP 144
+ + +
Sbjct: 141 MIQMLYYVK 149
Score = 31.2 bits (70), Expect = 0.71
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
Query: 381 VHAQALEILKD--YLKPGAKVLDIGSGSGYLTACM-----AHMVGPTGKVYAVEHIEDLV 433
+ + I+ K K+L IG G+G + + A G VE + +
Sbjct: 36 MDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQI 95
Query: 434 AQANK 438
A+ +
Sbjct: 96 AKYKE 100
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 42.8 bits (101), Expect = 9e-05
Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 19/141 (13%)
Query: 179 YWDIPQSLGFGSVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGK 238
YW+ + I+ +YL+ ++LDIG GSG ++ +A
Sbjct: 5 YWEKVSG-------KNIPSSLDLYPIIHNYLQEDDEILDIGCGSGKISLELASKG---YS 54
Query: 239 VYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHY 298
V ++ + + A + + N GG+ +F + + +D + +
Sbjct: 55 VTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSV 114
Query: 299 P-FKLMDQ--------LKPGG 310
P K + LKPG
Sbjct: 115 PDPKERSRIIKEVFRVLKPGA 135
Score = 42.8 bits (101), Expect = 1e-04
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 366 QKYWYHPNGFYDDLDVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVG 418
+ YW +G I+ +YL+ ++LDIG GSG ++ +A
Sbjct: 3 ESYWEKVSGKNIPS--SLDLYPIIHNYLQEDDEILDIGCGSGKISLELASKGY 53
Score = 38.2 bits (89), Expect = 0.004
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 54 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR 113
L E ++LDIG G+G + LA K V GI+ + ++ A S G+
Sbjct: 28 LQEDDEILDIGCGSGKISLELA---SKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGK 84
Query: 114 IKFVLGDGRKGYLDEAPYDIIHVGGSIEDIP 144
+F + + ++ +D + + +P
Sbjct: 85 AEFKVENASSLSFHDSSFDFAVMQAFLTSVP 115
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine, RNA metabolism, mRNA
processing, methyltransferase, poxvirus; HET: SAH; 2.70A
{Vaccinia virus}
Length = 302
Score = 43.2 bits (101), Expect = 1e-04
Identities = 29/205 (14%), Positives = 62/205 (30%), Gaps = 37/205 (18%)
Query: 210 KPGAKVLDIGSGSG-----YLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLM 264
KVL I G+G Y +A +V A+ + + N + T Y
Sbjct: 47 SNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFD 106
Query: 265 EGGRVQFVDGDGREGHAAE----GPYDVIYVGGAVHH---------YPFKLMDQLKPGGV 311
+ + D E G +++I A+H+ L + GG
Sbjct: 107 Y--IQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGK 164
Query: 312 MWFTIGNAEEMLKNNRRTESNLAVVKAHKKDHGEWEEEFMGRLWRLPALASVEEQKYWYH 371
+ T + +++ K + + K E + +++ Y+
Sbjct: 165 VLITTMDGDKLSKLTD--KKTFIIHKNLPSSENYMSVEKIA-----------DDRIVVYN 211
Query: 372 PNGFYDDLD---VHAQAL-EILKDY 392
P+ + + + + +Y
Sbjct: 212 PSTMSTPMTEYIIKKNDIVRVFNEY 236
Score = 35.5 bits (81), Expect = 0.027
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 47 LDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRA 97
+ + +KVL I GNG L + G+ ++ + + R
Sbjct: 39 CSKTFLDDSNKRKVLAIDFGNGAD--LEKYFYGEIALLVATDPDADAIARG 87
Score = 29.7 bits (66), Expect = 2.2
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 16/89 (17%)
Query: 394 KPGAKVLDIGSGSG-----YLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLM 448
KVL I G+G Y +A +V + D +A+ N+ Y L
Sbjct: 47 SNKRKVLAIDFGNGADLEKYFYGEIALLVA-------TDPDADAIARGNE----RYNKLN 95
Query: 449 EGGRVQFTEMAEKVMQLRVHMMSFTLEEQ 477
G + ++ + +R ++ E
Sbjct: 96 SGIKTKYYKFDYIQETIRSDTFVSSVREV 124
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 43.0 bits (101), Expect = 1e-04
Identities = 31/158 (19%), Positives = 47/158 (29%), Gaps = 30/158 (18%)
Query: 166 RRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYL 225
RR F++ + AQ E L D VLDIG G GY
Sbjct: 58 RRAFLDAGHYQPLRD---------------AIVAQLRERLDD---KATAVLDIGCGEGYY 99
Query: 226 TACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGP 285
T A P + ++ + + A K +V F ++
Sbjct: 100 THAFAD-ALPEITTFGLDVSKVAIKAAAKR----------YPQVTFCVASSHRLPFSDTS 148
Query: 286 YDVIYVGGAVHHYPFKLMDQLKPGGVMWFTIGNAEEML 323
D I A +L +KPGG + ++
Sbjct: 149 MDAIIRIYAPCKAE-ELARVVKPGGWVITATPGPRHLM 185
Score = 34.9 bits (80), Expect = 0.039
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 12/84 (14%)
Query: 38 FSKFQQAMVLDDLSEEL-TEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQR 96
+ + ++ L E L + VLDIG G GY+T A G++ ++
Sbjct: 66 HYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFAD-ALPEITTFGLDVSKVAIKA 124
Query: 97 ATHNVISGNPEFVKDGRIKFVLGD 120
A ++ F +
Sbjct: 125 AAKR----------YPQVTFCVAS 138
Score = 33.0 bits (75), Expect = 0.19
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 370 YHPNGFYDDLDVHAQALEILKDYLK-PGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEH 428
+ G Y + + L++ L VLDIG G GY T A P + ++
Sbjct: 61 FLDAGHYQP--LRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFAD-ALPEITTFGLDV 117
Query: 429 IEDLVAQANK 438
+ + A K
Sbjct: 118 SKVAIKAAAK 127
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA
PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Length = 375
Score = 43.2 bits (101), Expect = 1e-04
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 15/81 (18%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGR 268
L G +D+G+ G T + VY+V++ M +LM+ G+
Sbjct: 209 LANGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGP---------MA---QSLMDTGQ 253
Query: 269 VQFVDGDGREGHAAEGPYDVI 289
V ++ DG + +
Sbjct: 254 VTWLREDGFKFRPTRSNISWM 274
Score = 32.8 bits (74), Expect = 0.28
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 15/66 (22%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGR 452
L G +D+G+ G T + VY+V++ M +LM+ G+
Sbjct: 209 LANGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGP---------MA---QSLMDTGQ 253
Query: 453 VQFTEM 458
V +
Sbjct: 254 VTWLRE 259
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding,
tRNA methyltransferase, S-adenosyl-L-methionine, iron,
4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi}
PDB: 2vs1_A*
Length = 425
Score = 43.3 bits (103), Expect = 1e-04
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 32 FQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIP 91
FQ N+ QA+ L EL EG+K+LD+ SG G F LA + V G +
Sbjct: 271 FQTNSY-----QAVNLVRKVSELVEGEKILDMYSGVGTFGIYLA---KRGFNVKGFDSNE 322
Query: 92 QLVQRATHN 100
++ A N
Sbjct: 323 FAIEMARRN 331
Score = 29.4 bits (67), Expect = 3.1
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 254
L G K+LD+ SG G +A V + E + A +
Sbjct: 288 LVEGEKILDMYSGVGTFGIYLAKRGF---NVKGFDSNEFAIEMARR 330
Score = 29.4 bits (67), Expect = 3.1
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
L G K+LD+ SG G +A V + E + A +
Sbjct: 288 LVEGEKILDMYSGVGTFGIYLAKRGF---NVKGFDSNEFAIEMARR 330
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase
S-adenosly-L-methionine dependent methyltransfer
posttranslational modification; 1.59A {Thermus
thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A
2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A*
3egv_A* 3cjt_A*
Length = 254
Score = 42.3 bits (100), Expect = 2e-04
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 22/94 (23%)
Query: 202 LEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDL------VAQANKS 255
L+ L +L+PG KVLD+G+GSG L A A +G GK V D+ A+AN
Sbjct: 111 LKALARHLRPGDKVLDLGTGSGVL-AIAAEKLG--GKALGV----DIDPMVLPQAEANAK 163
Query: 256 MHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVI 289
N G R +F++G GP+D++
Sbjct: 164 R-----N---GVRPRFLEGSLEAA-LPFGPFDLL 188
Score = 39.6 bits (93), Expect = 0.001
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 386 LEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAV 426
L+ L +L+PG KVLD+G+GSG L A A +G GK V
Sbjct: 111 LKALARHLRPGDKVLDLGTGSGVL-AIAAEKLG--GKALGV 148
Score = 38.8 bits (91), Expect = 0.002
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRATHNVI 102
+ L L+ L G KVLD+G+G + +LA K G K +G++ P ++ +A N
Sbjct: 108 RLALKALARHLRPGDKVLDLGTG----SGVLAIAAEKLGGKALGVDIDPMVLPQAEAN-A 162
Query: 103 SGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 134
N V+ ++ L L P+D++
Sbjct: 163 KRNG--VRPRFLEGSLEAA----LPFGPFDLL 188
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase,
SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus
delbrueckii subsp}
Length = 205
Score = 41.0 bits (97), Expect = 3e-04
Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 21/94 (22%)
Query: 202 LEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDL------VAQANKS 255
+ ++ + V D+G+GSG L A AH +G V A D+ A+ N +
Sbjct: 51 MLGIERAMVKPLTVADVGTGSGIL-AIAAHKLGA-KSVLAT----DISDESMTAAEENAA 104
Query: 256 MHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVI 289
+ N + +Q +G +D+I
Sbjct: 105 L-----NGIYDIALQKTSLL----ADVDGKFDLI 129
Score = 39.1 bits (92), Expect = 0.001
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 386 LEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAV 426
+ ++ + V D+G+GSG L A AH +G V A
Sbjct: 51 MLGIERAMVKPLTVADVGTGSGIL-AIAAHKLGA-KSVLAT 89
Score = 31.8 bits (73), Expect = 0.38
Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 13/93 (13%)
Query: 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG--KVIGIEHIPQLVQRATHNV 101
+ + + + + V D+G+G+G +LA K G V+ + + + A N
Sbjct: 48 QLAMLGIERAMVKPLTVADVGTGSG----ILAIAAHKLGAKSVLATDISDESMTAAEEN- 102
Query: 102 ISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 134
+ N + D I + +D+I
Sbjct: 103 AALNG--IYD--IALQKTSLLADV--DGKFDLI 129
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding
motif, RNA binding protein; HET: SAM; 2.90A
{Archaeoglobus fulgidus} SCOP: c.66.1.3
Length = 210
Score = 41.1 bits (96), Expect = 3e-04
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 196 KVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEH----IEDLVAQ 251
K+ A L+ + L+ +VL +G+ SG + +A +V G +YAVE+ E L+
Sbjct: 42 KLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLEL 100
Query: 252 ANK 254
+
Sbjct: 101 VRE 103
Score = 38.8 bits (90), Expect = 0.002
Identities = 23/119 (19%), Positives = 52/119 (43%), Gaps = 17/119 (14%)
Query: 381 VHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEH----IEDLVAQA 436
+ A L+ + L+ +VL +G+ SG + +A +V G +YAVE+ E L+
Sbjct: 43 LAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELV 101
Query: 437 NKS-----------MHTYYPNLMEGGRVQFTEMA-EKVMQLRVHMMSFTLEEQSIIILS 483
+ Y ++E + + ++A + +++ F L+E+ +++
Sbjct: 102 RERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIM 160
Score = 32.2 bits (73), Expect = 0.26
Identities = 25/118 (21%), Positives = 47/118 (39%), Gaps = 24/118 (20%)
Query: 39 SKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIP----QLV 94
SK AM+L +L ++VL +G+ +G + LA V G + +E+ +L+
Sbjct: 41 SKLA-AMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLL 98
Query: 95 QRATH--NVISGNPEFVKDGRIKFVLGDGRK--GYLDEAPY-DIIHVGGSIEDIPEGV 147
+ N+I +L D K Y D+I+ + ++ E +
Sbjct: 99 ELVRERNNIIP-------------LLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEIL 143
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 40.5 bits (95), Expect = 3e-04
Identities = 24/173 (13%), Positives = 46/173 (26%), Gaps = 35/173 (20%)
Query: 202 LEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYP 261
++ L+ VLD+G+ +G +T + V + DL +A +S
Sbjct: 14 MDALEREGLEMKIVLDLGTSTGVITEQLRKR----NTVVST----DLNIRALESHR---- 61
Query: 262 NLMEGGRVQFVDGDGREGHAAEGPYDVI-----YVGGAVHHYPF----------KLMDQL 306
V D + DV+ YV + +D +
Sbjct: 62 ------GGNLVRADLLCSI-NQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV 114
Query: 307 KPGGVMWFTIGNAEEMLKNNRRTESNLAVVKAHKKDHGEWEEEFMGRLWRLPA 359
G + I R E + E ++ + +
Sbjct: 115 TVGMLYLLVIEANRPKEVLARLEERGYGTRILKVRKIL-GETVYIIKGEKSHH 166
Score = 34.0 bits (78), Expect = 0.054
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 386 LEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAV 426
++ L+ VLD+G+ +G +T + V +
Sbjct: 14 MDALEREGLEMKIVLDLGTSTGVITEQLRKR----NTVVST 50
Score = 32.8 bits (75), Expect = 0.11
Identities = 28/147 (19%), Positives = 53/147 (36%), Gaps = 31/147 (21%)
Query: 47 LDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN------ 100
+D L E E K VLD+G+ G T L K V+ + + ++
Sbjct: 14 MDALEREGLEMKIVLDLGTSTGVITEQLR----KRNTVVSTDLNIRALESHRGGNLVRAD 69
Query: 101 -----------VISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEGVRF 149
V+ NP +V D ++G G G D ++ + G+ +
Sbjct: 70 LLCSINQESVDVVVFNPPYVPDT-DDPIIGGGYLGR---EVIDRF-----VDAVTVGMLY 120
Query: 150 G-HIASPKVESVMRSIDRRRFIERPIM 175
I + + + V+ ++ R + R +
Sbjct: 121 LLVIEANRPKEVLARLEERGYGTRILK 147
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification,
iron-sulfur cluster, RNA processing; 1.95A {Escherichia
coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Length = 433
Score = 41.7 bits (99), Expect = 4e-04
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN 100
++ +VLD+ G G FT LA + V+G+E +P LV++ N
Sbjct: 283 DVQPEDRVLDLFCGMGNFTLPLA---TQAASVVGVEGVPALVEKGQQN 327
Score = 34.0 bits (79), Expect = 0.12
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 199 AQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 254
A+ALE L ++P +VLD+ G G T +A V VE + LV + +
Sbjct: 276 ARALEWLD--VQPEDRVLDLFCGMGNFTLPLATQAA---SVVGVEGVPALVEKGQQ 326
Score = 34.0 bits (79), Expect = 0.12
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 383 AQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
A+ALE L ++P +VLD+ G G T +A V VE + LV + +
Sbjct: 276 ARALEWLD--VQPEDRVLDLFCGMGNFTLPLATQAA---SVVGVEGVPALVEKGQQ 326
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation,
transferase transferase inhibitor complex; HET: SAH;
1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A*
3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A*
1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A*
3s68_A* 2zlb_A 2zth_A* ...
Length = 221
Score = 40.8 bits (96), Expect = 5e-04
Identities = 24/134 (17%), Positives = 48/134 (35%), Gaps = 22/134 (16%)
Query: 192 MSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQ 251
M+ Q ++ + P + VL++G+ GY MA ++ P ++ +E D A
Sbjct: 40 MNVGDAKGQIMDAVIREYSP-SLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAI 98
Query: 252 ANKSMHTYYPNLMEGG---RVQFVDGDGRE------GHAAEGPYDVIYVGGAVHHY--PF 300
+ L G +V ++G ++ D++++ Y
Sbjct: 99 TQQ-------MLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDT 151
Query: 301 KL---MDQLKPGGV 311
L L+ G V
Sbjct: 152 LLLEKCGLLRKGTV 165
Score = 33.1 bits (76), Expect = 0.12
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 398 KVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
VL++G+ GY MA ++ P ++ +E D A +
Sbjct: 61 LVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQ 101
Score = 32.3 bits (74), Expect = 0.28
Identities = 11/80 (13%), Positives = 29/80 (36%), Gaps = 7/80 (8%)
Query: 43 QAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNV- 101
+ ++D + VL++G+ GY +A + +++ +E P +
Sbjct: 46 KGQIMDAVIR-EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLN 104
Query: 102 ISGNPEFVKDGRIKFVLGDG 121
+G ++ + G
Sbjct: 105 FAG-----LQDKVTILNGAS 119
>2b3t_A Protein methyltransferase HEMK; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Length = 276
Score = 40.2 bits (95), Expect = 8e-04
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 14/92 (15%)
Query: 200 QALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIED--LVAQANKSMH 257
QAL L + ++LD+G+G+G + +A P ++ AV+ + D +AQ N
Sbjct: 101 QALARLPE---QPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHL 156
Query: 258 TYYPNLMEGGRVQFVDGDGREGHAAEGPYDVI 289
+ + D A + +I
Sbjct: 157 -------AIKNIHILQSDWFSA-LAGQQFAMI 180
Score = 34.0 bits (79), Expect = 0.074
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 384 QALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIED--LVAQANKSMH 441
QAL L + ++LD+G+G+G + +A P ++ AV+ + D +AQ N
Sbjct: 101 QALARLPE---QPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHL 156
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation,
transferase; HET: SAH TYD; 1.40A {Micromonospora
chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A*
4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Length = 416
Score = 40.4 bits (95), Expect = 0.001
Identities = 26/148 (17%), Positives = 46/148 (31%), Gaps = 19/148 (12%)
Query: 188 FGSVMSSPKVHAQ--ALEILKDY-LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEH 244
S S + H A + L P +++IG G + + + + E
Sbjct: 81 HSSGSSVMREHFAMLARDFLATELTGPDPFIVEIGCNDGIM---LRTIQEAGVRHLGFEP 137
Query: 245 IEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYP----- 299
+ A+A + + F + EGP +VIY + H P
Sbjct: 138 SSGVAAKAREKGIRVRTDF-------FEKATADDVRRTEGPANVIYAANTLCHIPYVQSV 190
Query: 300 -FKLMDQLKPGGVMWFTIGNAEEMLKNN 326
+ L P GV F +++
Sbjct: 191 LEGVDALLAPDGVFVFEDPYLGDIVAKT 218
Score = 32.7 bits (75), Expect = 0.30
Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 7/76 (9%)
Query: 366 QKYWYHPNGFYDDLDVHAQ--ALEILKDY-LKPGAKVLDIGSGSGYLTACMAHMVGPTGK 422
+ Y YH + H A + L P +++IG G + + + +
Sbjct: 76 EVYPYHS-SGSSVMREHFAMLARDFLATELTGPDPFIVEIGCNDGIM---LRTIQEAGVR 131
Query: 423 VYAVEHIEDLVAQANK 438
E + A+A +
Sbjct: 132 HLGFEPSSGVAAKARE 147
Score = 31.2 bits (71), Expect = 0.88
Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 10/92 (10%)
Query: 54 LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR 113
+++IG +G L + +G E + +A I +F
Sbjct: 105 TGPDPFIVEIGCNDGIM---LRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRTDF----- 156
Query: 114 IKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 145
F E P ++I+ ++ IP
Sbjct: 157 --FEKATADDVRRTEGPANVIYAANTLCHIPY 186
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP:
c.66.1.56
Length = 409
Score = 40.5 bits (94), Expect = 0.001
Identities = 17/113 (15%), Positives = 35/113 (30%), Gaps = 14/113 (12%)
Query: 37 KFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFT-ALLAWCVGKTGKVIGIE----HIP 91
+ + + ++ +K++D G+ G L+ GK +V IE ++
Sbjct: 207 EVERPYSTLYFRSGLLRFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQ 266
Query: 92 QLVQRATHNVISGNPEFV---------KDGRIKFVLGDGRKGYLDEAPYDIIH 135
L + + R+ F G G++ A D
Sbjct: 267 TLQNVLRRYTDTNFASRITVHGCGAGENTIRVPFNHEGGHGGFVKPADADHEP 319
Score = 35.8 bits (82), Expect = 0.029
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 208 YLKPGAKVLDIGSGSGYLTACMA-HMVGPTGKVYAVE 243
K++D G+ G A + G +V+ +E
Sbjct: 223 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIE 259
Score = 35.8 bits (82), Expect = 0.029
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 392 YLKPGAKVLDIGSGSGYLTACMA-HMVGPTGKVYAVE 427
K++D G+ G A + G +V+ +E
Sbjct: 223 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIE 259
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Length = 313
Score = 39.6 bits (91), Expect = 0.002
Identities = 24/145 (16%), Positives = 46/145 (31%), Gaps = 22/145 (15%)
Query: 200 QALEILKDYLKPGAKVLDIGSGSG-YLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHT 258
+ LE ++ K VLD+G G G L + K+ + + V Q +
Sbjct: 23 EFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRI---NKLVCTDIADVSVKQCQQRYED 79
Query: 259 YYPNLMEGG--RVQFVDGDGREGH------AAEGPYDVIYVGGAVHHY----------PF 300
+F+ D + + +D+ H+
Sbjct: 80 MKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLR 139
Query: 301 KLMDQLKPGGVMWFTIGNAEEMLKN 325
++L PGG T N+ E+++
Sbjct: 140 NACERLSPGGYFIGTTPNSFELIRR 164
Score = 37.6 bits (86), Expect = 0.006
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 4/90 (4%)
Query: 45 MVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRAT--HNVI 102
L+ + ++ VLD+G G G LL W G+ K++ + V++ + +
Sbjct: 23 EFLEKVRQKKKRDITVLDLGCGKGGD--LLKWKKGRINKLVCTDIADVSVKQCQQRYEDM 80
Query: 103 SGNPEFVKDGRIKFVLGDGRKGYLDEAPYD 132
+ +F+ D K L + D
Sbjct: 81 KNRRDSEYIFSAEFITADSSKELLIDKFRD 110
Score = 28.0 bits (61), Expect = 7.8
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 384 QALEILKDYLKPGAKVLDIGSGSG-----YLTACMAHMVG 418
+ LE ++ K VLD+G G G + + +V
Sbjct: 23 EFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVC 62
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 39.4 bits (91), Expect = 0.002
Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 17/124 (13%)
Query: 194 SPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQAN 253
S + AQ ++ +K + +D+GSG G + +A Y VE + A
Sbjct: 158 SFDLVAQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYA- 213
Query: 254 KSMHTYYPNLM-----EGGRVQFVDGDGREGHAAE--GPYDVIYVGGAVHHYPF--KLMD 304
++M + M + GD E VI+ V+++ F ++
Sbjct: 214 ETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIF----VNNFAFGPEVDH 269
Query: 305 QLKP 308
QLK
Sbjct: 270 QLKE 273
Score = 37.5 bits (86), Expect = 0.010
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 13/86 (15%)
Query: 42 QQAMVLDDLSEELTEGKKVLDIGSGNG---YFTALLAWCVGKTGKVIGIEHIPQLVQRAT 98
A ++D++ ++T+ +D+GSG G A C G+E + A
Sbjct: 161 LVAQMIDEI--KMTDDDLFVDLGSGVGQVVLQVAAATNC----KHHYGVEKADIPAKYAE 214
Query: 99 HNVISGNPEF----VKDGRIKFVLGD 120
K GD
Sbjct: 215 TMDREFRKWMKWYGKKHAEYTLERGD 240
Score = 33.3 bits (75), Expect = 0.17
Identities = 20/109 (18%), Positives = 41/109 (37%), Gaps = 4/109 (3%)
Query: 378 DLDVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQAN 437
D+ AQ ++ +K + +D+GSG G + +A Y VE + A
Sbjct: 158 SFDLVAQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYA- 213
Query: 438 KSMHTYYPNLMEGGRVQFTEMAEKVMQLRVHMMSFTLEEQSIIILSSFM 486
++M + M+ + E + + S+I +++F
Sbjct: 214 ETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFA 262
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Length = 354
Score = 39.0 bits (91), Expect = 0.003
Identities = 34/151 (22%), Positives = 52/151 (34%), Gaps = 26/151 (17%)
Query: 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGG-- 267
+PG +VLD +GSG + A +GPT VYA + E + A + + G
Sbjct: 202 RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLARE-------AALASGLS 254
Query: 268 RVQFVDGDGREGHAAEGPYDVIYV----------GGAVHH-YPFKL---MDQLKPGGVMW 313
++F+ D R D I + H Y L + L PGG +
Sbjct: 255 WIRFLRADARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVA 314
Query: 314 FTIGNAEEMLKNNRRTESNLAVVKAHKKDHG 344
+ R A+ A + G
Sbjct: 315 LLTLRPALL---KRALPPGFALRHARVVEQG 342
Score = 31.7 bits (72), Expect = 0.59
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 394 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQA 436
+PG +VLD +GSG + A +GPT VYA + E + A
Sbjct: 202 RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLA 244
Score = 30.5 bits (69), Expect = 1.2
Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 10/98 (10%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDG 112
+ G +VLD +G+G A +G T V + + + A ++
Sbjct: 200 DARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS----- 254
Query: 113 RIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEGVRFG 150
I+F+ D R D I + + P G+R G
Sbjct: 255 WIRFLRADARHLPRFFPEVDRI-----LANPPHGLRLG 287
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 38.8 bits (90), Expect = 0.003
Identities = 20/122 (16%), Positives = 38/122 (31%), Gaps = 20/122 (16%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTG-KVYAVEHIEDLVAQANKSMHTYYPNLMEGG 267
+ KVLD+G G G + ++ + G V + +H E+ +A N++ E
Sbjct: 118 IISPCKVLDLGCGQGRNSLYLSLL----GYDVTSWDHNENSIAFLNETKEK------ENL 167
Query: 268 RVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQ--------LKPGGVMWFTIGNA 319
+ D + YD I + + GG +
Sbjct: 168 NISTALYDINA-ANIQENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMS 226
Query: 320 EE 321
+
Sbjct: 227 TD 228
Score = 33.4 bits (76), Expect = 0.12
Identities = 23/141 (16%), Positives = 40/141 (28%), Gaps = 21/141 (14%)
Query: 27 HMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVI 85
+K + ++ KVLD+G G G + L+ G V
Sbjct: 91 FYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQGRNSLYLS----LLGYDVT 146
Query: 86 GIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPE 145
+H + N I L D + E YD I
Sbjct: 147 SWDHNENSIAFLNETKEKENL------NISTALYDINAANIQE-NYDFIVSTVV------ 193
Query: 146 GVRFGHIASPKVESVMRSIDR 166
F + +V S+++++
Sbjct: 194 ---FMFLNRERVPSIIKNMKE 211
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 38.9 bits (91), Expect = 0.003
Identities = 24/148 (16%), Positives = 45/148 (30%), Gaps = 27/148 (18%)
Query: 178 PYWDIPQSLGFGSVMSSPKVHAQALEILKDY-LKPGAKVLDIGSGSG-YLTACMAHMVGP 235
D F M + + V+D+ G G YL +
Sbjct: 146 FAHDTRARDAFNDAMVR-LSQPMVDVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQL 204
Query: 236 TGKVY----AVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGP-YDVIY 290
TG+++ + + + GRV+F + + + EG DV+
Sbjct: 205 TGQIWDLPTTRDAARKTIHAHDLG-----------GRVEFFEKNLLDARNFEGGAADVVM 253
Query: 291 VGGAVHHYPF--------KLMDQLKPGG 310
+ +H++ +KPGG
Sbjct: 254 LNDCLHYFDAREAREVIGHAAGLVKPGG 281
Score = 35.8 bits (83), Expect = 0.030
Identities = 22/153 (14%), Positives = 47/153 (30%), Gaps = 33/153 (21%)
Query: 1 MLAVDRGHYTTWRPYANCI-TNIGYGAHMQAPFQDNTKFSK-FQQAM------VLDDLSE 52
++ + W + + ++ F +T+ F AM ++D +SE
Sbjct: 114 IVEHQYLQWDNWPRLGEILRSEKPLAFQQESRFAHDTRARDAFNDAMVRLSQPMVDVVSE 173
Query: 53 --ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRAT----HNVISGNP 106
+ V+D+ G+G + A + PQL
Sbjct: 174 LGVFARARTVIDLAGGHGTYLAQVL------------RRHPQL--TGQIWDLPTTRDAAR 219
Query: 107 EFVKD----GRIKFVLGDGRKGYLDEAP-YDII 134
+ + GR++F + E D++
Sbjct: 220 KTIHAHDLGGRVEFFEKNLLDARNFEGGAADVV 252
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, regulator,
mRNA processing; 2.55A {Rattus norvegicus}
Length = 480
Score = 38.6 bits (89), Expect = 0.004
Identities = 32/139 (23%), Positives = 51/139 (36%), Gaps = 36/139 (25%)
Query: 364 EEQKYWYHPNGFYDDLDVHAQALEILKDYLK---------------PGAKVLDIGSGSGY 408
E Y FY L +++DY++ VLD+G GSG
Sbjct: 117 ESSAVQYF--QFYGYLSQQ---QNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGI 171
Query: 409 LTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFTEMAEKVMQLRVH 468
L + A G K+YAVE + A V+ + ++++ +
Sbjct: 172 L-SFFAAQAGAR-KIYAVEAST-MAQHAEVL-------------VKSNNLTDRIVVIPGK 215
Query: 469 MMSFTLEEQSIIILSSFMG 487
+ +L EQ II+S MG
Sbjct: 216 VEEVSLPEQVDIIISEPMG 234
Score = 37.4 bits (86), Expect = 0.009
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 11/112 (9%)
Query: 23 GYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG 82
GY + Q QD + +Q+A++ + + K VLD+G G+G + A G
Sbjct: 128 GYLSQQQNMMQDYVRTGTYQRAILQN---HTDFKDKIVLDVGCGSGIL-SFFAAQAGAR- 182
Query: 83 KVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 134
K+ +E + Q A V S N RI + G + L E DII
Sbjct: 183 KIYAVEAST-MAQHAEVLVKSNN----LTDRIVVIPGKVEEVSLPE-QVDII 228
Score = 35.9 bits (82), Expect = 0.029
Identities = 28/114 (24%), Positives = 40/114 (35%), Gaps = 18/114 (15%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGR 268
VLD+G GSG L + A G K+YAVE A + N + R
Sbjct: 156 DFKDKIVLDVGCGSGIL-SFFAAQAGAR-KIYAVEASTM----AQHAEVLVKSNNLT-DR 208
Query: 269 VQFVDGDGREGHAAEGPYDVI---------YVGGAVHHYPFKLMDQLKPGGVMW 313
+ + G E + D+I + + Y LKP G M+
Sbjct: 209 IVVIPGKVEE-VSLPEQVDIIISEPMGYMLFNERMLESYLHA-KKYLKPSGNMF 260
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 38.1 bits (88), Expect = 0.004
Identities = 22/142 (15%), Positives = 45/142 (31%), Gaps = 23/142 (16%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTG-KVYAVEHIEDLVAQANKSMHTYYPNLMEGG 267
+VLD+ G+G + + G V +V+ + ++ A K
Sbjct: 55 QHGCHRVLDVACGTGVDSIMLVEE----GFSVTSVDASDKMLKYALKERWNRRKEP-AFD 109
Query: 268 RVQFVDGDGREGHA---AEGPYDVIY-VGGAVHHYPFKLMDQ-------------LKPGG 310
+ + + A +D + +G + H P DQ ++PGG
Sbjct: 110 KWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGG 169
Query: 311 VMWFTIGNAEEMLKNNRRTESN 332
++ N + +L
Sbjct: 170 LLVIDHRNYDYILSTGCAPPGK 191
Score = 31.9 bits (72), Expect = 0.39
Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 13/88 (14%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGIEHIPQLVQRATHNVISGNPEFVKD 111
+VLD+ G G + +L + G V ++ ++++ A + E
Sbjct: 54 RQHGCHRVLDVACGTGVDSIMLV----EEGFSVTSVDASDKMLKYALKERWNRRKEPA-- 107
Query: 112 GRIKFVLGDGRKGYLD-----EAPYDII 134
K+V+ + LD +D +
Sbjct: 108 -FDKWVIEEANWLTLDKDVPAGDGFDAV 134
Score = 31.5 bits (71), Expect = 0.50
Identities = 15/112 (13%), Positives = 31/112 (27%), Gaps = 14/112 (12%)
Query: 369 WYHPNGFYDDLDVHAQALEILKDYLK--PGAKVLDIGSGSGYLTACMAHMVGPTG-KVYA 425
+ D A+ L L+ +VLD+ G+G + + G V +
Sbjct: 30 VWQLY-IGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE----GFSVTS 84
Query: 426 VEHIEDLVAQANKSMHTYYPNLMEGGRVQFTEMAEKVMQLRVHMMSFTLEEQ 477
V+ + ++ A K F + + +
Sbjct: 85 VDASDKMLKYALKERWN------RRKEPAFDKWVIEEANWLTLDKDVPAGDG 130
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure initiative;
1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Length = 200
Score = 37.3 bits (86), Expect = 0.005
Identities = 21/154 (13%), Positives = 47/154 (30%), Gaps = 21/154 (13%)
Query: 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNV-- 101
+++ ++ G+ V+D G+GNG A ++ +G V + P ++ A N
Sbjct: 39 YFLIEIYNDGNIGGRSVIDAGTGNGIL-ACGSYLLG-AESVTAFDIDPDAIETAKRNCGG 96
Query: 102 --ISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDIPEGVRFGH-----IAS 154
G+ + + P+ + I + +
Sbjct: 97 VNFMVADVSEISGKYDTWIMN--------PPFGSVVKHSDRAFIDKAFETSMWIYSIGNA 148
Query: 155 PKVESVMRSIDRRRFIERPIMNNPYWDIPQSLGF 188
+ + R R + R Y +P+
Sbjct: 149 KARDFLRREFSARGDVFREE--KVYITVPRIYRH 180
Score = 33.8 bits (77), Expect = 0.066
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 202 LEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 254
+EI D G V+D G+G+G L AC ++++G V A + D + A +
Sbjct: 42 IEIYNDGNIGGRSVIDAGTGNGIL-ACGSYLLGA-ESVTAFDIDPDAIETAKR 92
Score = 33.8 bits (77), Expect = 0.066
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 386 LEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
+EI D G V+D G+G+G L AC ++++G V A + D + A +
Sbjct: 42 IEIYNDGNIGGRSVIDAGTGNGIL-ACGSYLLGA-ESVTAFDIDPDAIETAKR 92
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1;
mixed alpha beta fold, structural genomics, PSI; HET:
SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP:
c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Length = 287
Score = 37.9 bits (89), Expect = 0.005
Identities = 29/148 (19%), Positives = 44/148 (29%), Gaps = 38/148 (25%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTG-KVYAV-------EHIEDLVAQANKSMHTYY 260
L+PG +LD+G G G M V V + H++ LVA +
Sbjct: 62 LQPGMTLLDVGCGWGAT---MMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENL----- 113
Query: 261 PNLMEGGRVQFVDGDGREGHAAEGPYDVIY-------VGGAVHHYP--FKLMDQ-LKPGG 310
+ + + + P D I G Y F L + L G
Sbjct: 114 ------RSKRVLLAGWEQ---FDEPVDRIVSIGAFEHFG--HERYDAFFSLAHRLLPADG 162
Query: 311 VMWF-TIGNAEEMLKNNRRTESNLAVVK 337
VM TI + R + +
Sbjct: 163 VMLLHTITGLHPKEIHERGLPMSFTFAR 190
Score = 31.8 bits (73), Expect = 0.45
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 368 YWYHPNGFYDDLDVHAQ----ALEILKDYLKPGAKVLDIGSGSGYL 409
Y+ + L AQ L + K L+PG +LD+G G G
Sbjct: 37 YFERDD---MTLQ-EAQIAKIDLALGKLGLQPGMTLLDVGCGWGAT 78
Score = 29.1 bits (66), Expect = 3.3
Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 32/99 (32%)
Query: 54 LTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGI-------EHIPQLVQRATHNVISGN 105
L G +LD+G G G A + V K V+G+ H+ QLV + +
Sbjct: 62 LQPGMTLLDVGCGWG---ATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSEN------ 112
Query: 106 PEFVKDGRIKFVLGDGRKGYLDEAPYDII-------HVG 137
+ +L + DE P D I H G
Sbjct: 113 -----LRSKRVLLAGWEQ--FDE-PVDRIVSIGAFEHFG 143
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine,
methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A
{Escherichia coli}
Length = 369
Score = 37.6 bits (88), Expect = 0.007
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 56 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN 100
+L++ GNG F+ LA +V+ E V A +N
Sbjct: 213 SKGDLLELYCGNGNFSLALA---RNFDRVLATEIAKPSVAAAQYN 254
Score = 31.4 bits (72), Expect = 0.65
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 199 AQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 254
AL++ K G +L++ G+G + +A +V A E + VA A
Sbjct: 204 EWALDVTK--GSKG-DLLELYCGNGNFSLALARNFD---RVLATEIAKPSVAAAQY 253
Score = 31.4 bits (72), Expect = 0.65
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 383 AQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANK 438
AL++ K G +L++ G+G + +A +V A E + VA A
Sbjct: 204 EWALDVTK--GSKG-DLLELYCGNGNFSLALARNFD---RVLATEIAKPSVAAAQY 253
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 37.3 bits (86), Expect = 0.008
Identities = 27/114 (23%), Positives = 41/114 (35%), Gaps = 16/114 (14%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGR 268
+ VLD+G G+G L + A G KV V+ E ++M N +E
Sbjct: 62 IFKDKVVLDVGCGTGIL-SMFAAKAGAK-KVLGVDQSEI----LYQAMDIIRLNKLE-DT 114
Query: 269 VQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQ---------LKPGGVMW 313
+ + G E H DVI + F+ M L GG ++
Sbjct: 115 ITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168
Score = 36.6 bits (84), Expect = 0.016
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 22/82 (26%)
Query: 364 EEQKYWYHPNGFYDDLDVHAQALEILKDY---------------LKPGAKVLDIGSGSGY 408
E++ Y Y +H E+LKD + VLD+G G+G
Sbjct: 23 EDEDGVYF--SSYGHYGIH---EEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGI 77
Query: 409 LTACMAHMVGPTGKVYAVEHIE 430
L + A G KV V+ E
Sbjct: 78 L-SMFAAKAGAK-KVLGVDQSE 97
Score = 34.3 bits (78), Expect = 0.072
Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 14/104 (13%)
Query: 33 QDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG--KVIGIEHI 90
+D + ++ + + + + K VLD+G G T +L+ K G KV+G++
Sbjct: 44 KDKIRTESYRDFIYQN---PHIFKDKVVLDVGCG----TGILSMFAAKAGAKKVLGVDQS 96
Query: 91 PQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 134
L Q ++I N + I + G + +L D+I
Sbjct: 97 EILYQ--AMDIIRLNK---LEDTITLIKGKIEEVHLPVEKVDVI 135
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification;
HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A*
3b3g_A 2v74_B* 2v7e_A
Length = 348
Score = 37.3 bits (86), Expect = 0.009
Identities = 32/139 (23%), Positives = 51/139 (36%), Gaps = 36/139 (25%)
Query: 364 EEQKYWYHPNGFYDDLDVHAQALEILKDYLK---------------PGAKVLDIGSGSGY 408
E Y FY L +++DY++ VLD+G GSG
Sbjct: 9 ESSAVQYF--QFYGYLSQQ---QNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGI 63
Query: 409 LTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFTEMAEKVMQLRVH 468
L + A G K+YAVE + A V+ + ++++ +
Sbjct: 64 L-SFFAAQAGAR-KIYAVEAST-MAQHAEVL-------------VKSNNLTDRIVVIPGK 107
Query: 469 MMSFTLEEQSIIILSSFMG 487
+ +L EQ II+S MG
Sbjct: 108 VEEVSLPEQVDIIISEPMG 126
Score = 35.4 bits (81), Expect = 0.033
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 11/112 (9%)
Query: 23 GYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG 82
GY + Q QD + +Q+A++ + + K VLD+G G+G + A G
Sbjct: 20 GYLSQQQNMMQDYVRTGTYQRAILQ---NHTDFKDKIVLDVGCGSGIL-SFFAAQAGAR- 74
Query: 83 KVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 134
K+ +E + Q A V S N RI + G + L E DII
Sbjct: 75 KIYAVEAST-MAQHAEVLVKSNN----LTDRIVVIPGKVEEVSLPE-QVDII 120
Score = 35.0 bits (80), Expect = 0.049
Identities = 28/114 (24%), Positives = 40/114 (35%), Gaps = 18/114 (15%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGR 268
VLD+G GSG L + A G K+YAVE A + N + R
Sbjct: 48 DFKDKIVLDVGCGSGIL-SFFAAQAGAR-KIYAVEASTM----AQHAEVLVKSNNLT-DR 100
Query: 269 VQFVDGDGREGHAAEGPYDVI---------YVGGAVHHYPFKLMDQLKPGGVMW 313
+ + G E + D+I + + Y LKP G M+
Sbjct: 101 IVVIPGKVEE-VSLPEQVDIIISEPMGYMLFNERMLESYLHA-KKYLKPSGNMF 152
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine
methyltransferase, methylation; HET: SAH; 2.61A
{Arabidopsis thaliana}
Length = 376
Score = 37.1 bits (85), Expect = 0.011
Identities = 28/109 (25%), Positives = 39/109 (35%), Gaps = 30/109 (27%)
Query: 375 FYDDLDVHAQALEILKDY---------------LKPGAKVLDIGSGSGYLTACMAHMVGP 419
Y L ++L D G VLD+G+GSG L A G
Sbjct: 31 TYSFLYHQK---DMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQA-GA 86
Query: 420 TGKVYAVEHIEDLVAQANKSMHTYYPNLMEG------GRVQFTEMAEKV 462
KVYAVE + A+ + N ++ G V+ + EKV
Sbjct: 87 R-KVYAVEATKM----ADHARALVKANNLDHIVEVIEGSVEDISLPEKV 130
Score = 34.4 bits (78), Expect = 0.079
Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 15/114 (13%)
Query: 23 GYGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG 82
+ H + D + + A+ + + EGK VLD+G+G+G +LA + G
Sbjct: 33 SFLYHQKDMLSDRVRMDAYFNAVFQN---KHHFEGKTVLDVGTGSG----ILAIWSAQAG 85
Query: 83 --KVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 134
KV +E + A V + N D ++ + G L E D+I
Sbjct: 86 ARKVYAVEATK-MADHARALVKANN----LDHIVEVIEGSVEDISLPE-KVDVI 133
Score = 33.6 bits (76), Expect = 0.13
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGR 268
G VLD+G+GSG L A G KVYAVE + A+ + N ++
Sbjct: 61 HFEGKTVLDVGTGSGILAIWSAQA-GAR-KVYAVEATKM----ADHARALVKANNLD-HI 113
Query: 269 VQFVDGDGREGHAAEGPYDVI 289
V+ ++G + E DVI
Sbjct: 114 VEVIEGSVEDISLPE-KVDVI 133
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent
methyltransferase fold, trans; HET: SAM; 2.00A
{Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB:
2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Length = 318
Score = 35.3 bits (82), Expect = 0.032
Identities = 25/122 (20%), Positives = 35/122 (28%), Gaps = 37/122 (30%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTG-KVYAV-------EHIEDLVAQANKSMHTYY 260
LKPG +LDIG G G M V V + E ++A + +
Sbjct: 88 LKPGMTLLDIGCGWGTT---MRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTN----- 139
Query: 261 PNLMEGGRVQFVDGDGREGHAAEGPYDVIY-------VGGAVHHYP--FKLMDQ-LKPGG 310
Q + + P D I G +Y FK + G
Sbjct: 140 ------RSRQVLLQGWED---FAEPVDRIVSIEAFEHFG--HENYDDFFKRCFNIMPADG 188
Query: 311 VM 312
M
Sbjct: 189 RM 190
Score = 30.6 bits (70), Expect = 0.92
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 8/46 (17%)
Query: 368 YWYHPNGFYDDLDVHAQ----ALEILKDYLKPGAKVLDIGSGSGYL 409
Y+ P L+ AQ L + K LKPG +LDIG G G
Sbjct: 63 YFEPPE---LTLE-EAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTT 104
Score = 28.3 bits (64), Expect = 5.9
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 54 LTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGI 87
L G +LDIG G G + V + VIG+
Sbjct: 88 LKPGMTLLDIGCGWG---TTMRRAVERFDVNVIGL 119
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics,
structural genomics consortium; HET: SAM; 1.90A {Homo
sapiens} SCOP: c.66.1.24
Length = 285
Score = 35.4 bits (82), Expect = 0.033
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGR 268
L+P VL++G G+G +T + KV A E LVA+ +K + +
Sbjct: 26 LRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVA----SK 78
Query: 269 VQFVDGD 275
+Q + GD
Sbjct: 79 LQVLVGD 85
Score = 33.1 bits (76), Expect = 0.16
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTY 443
L+P VL++G G+G +T + KV A E LVA+ +K +
Sbjct: 26 LRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGT 73
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain,
beta-barrel, mixed alpha-beta, hexamer; 2.90A
{Saccharomyces cerevisiae} SCOP: c.66.1.6
Length = 328
Score = 35.4 bits (81), Expect = 0.034
Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 20/69 (28%)
Query: 375 FYDDLDVHAQALEILKDY---------------LKPGAKVLDIGSGSGYLTACMAHMVGP 419
YD +H E+L+D L VLD+G G+G L + A G
Sbjct: 6 SYDHYGIH---EEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGIL-SMFAAKHGA 61
Query: 420 TGKVYAVEH 428
V V+
Sbjct: 62 K-HVIGVDM 69
Score = 33.1 bits (75), Expect = 0.21
Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 16/114 (14%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGR 268
L VLD+G G+G L + A G V V+ + N +
Sbjct: 36 LFKDKIVLDVGCGTGIL-SMFAAKHGAK-HVIGVDMSSI----IEMAKELVELNGFS-DK 88
Query: 269 VQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQ---------LKPGGVMW 313
+ + G + H D+I + ++ M L GG+++
Sbjct: 89 ITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142
Score = 30.4 bits (68), Expect = 1.5
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 14/90 (15%)
Query: 33 QDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG--KVIGIEHI 90
QD + ++ A++ + ++L + K VLD+G G G +L+ K G VIG++
Sbjct: 18 QDTVRTLSYRNAIIQN---KDLFKDKIVLDVGCGTG----ILSMFAAKHGAKHVIGVDMS 70
Query: 91 PQLVQRATHNVISGNPEFVKDGRIKFVLGD 120
+++ A V +I + G
Sbjct: 71 S-IIEMAKELVELNG----FSDKITLLRGK 95
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural
genomics, riken structural genomics/proteomics in RSGI;
HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Length = 392
Score = 35.2 bits (80), Expect = 0.038
Identities = 24/133 (18%), Positives = 40/133 (30%), Gaps = 7/133 (5%)
Query: 201 ALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYY 260
LE L L KV D S SG K YA + + ++
Sbjct: 42 GLEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFK--- 98
Query: 261 PNLMEGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHHYPFKLMDQ----LKPGGVMWFTI 316
N + R + + E + YV P ++ +K GG++ T
Sbjct: 99 LNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLDPFGTPVPFIESVALSMKRGGILSLTA 158
Query: 317 GNAEEMLKNNRRT 329
+ + +T
Sbjct: 159 TDTAPLSGTYPKT 171
Score = 34.8 bits (79), Expect = 0.053
Identities = 22/120 (18%), Positives = 32/120 (26%), Gaps = 12/120 (10%)
Query: 360 LASVEEQKYWYHPNGFYD-------DLDVHAQALEILKDYLKPGAKVLDIGSGSGYLTAC 412
+ + FY+ DL V LE L L KV D S SG
Sbjct: 12 IVPEIPKTVSSDMPVFYNPRMRVNRDLAVLG--LEYLCKKLGRPVKVADPLSASGIRAIR 69
Query: 413 MAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGRVQFTEMAEKVMQLRVHMMSF 472
K YA + + ++ N + R + M + F
Sbjct: 70 FLLETSCVEKAYANDISSKAIEIMKENFK---LNNIPEDRYEIHGMEANFFLRKEWGFGF 126
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet;
adenosine dimethyltransferase, rRNA modification,
transferase, translation; 2.10A {Escherichia coli} SCOP:
c.66.1.24 PDB: 4adv_V 3tpz_A
Length = 252
Score = 34.4 bits (80), Expect = 0.050
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNL 263
+ G +++IG G LT + + ++ +E DL A+ P L
Sbjct: 19 PQKGQAMVEIGPGLAALTEPVGERL---DQLTVIELDRDLAARLQTHPF-LGPKL 69
Score = 34.4 bits (80), Expect = 0.050
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNL 447
+ G +++IG G LT + + ++ +E DL A+ P L
Sbjct: 19 PQKGQAMVEIGPGLAALTEPVGERL---DQLTVIELDRDLAARLQTHPF-LGPKL 69
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Length = 349
Score = 34.6 bits (79), Expect = 0.059
Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 18/115 (15%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGR 268
L VLD+GSG+G L A G KV +E ++ ++ N ++
Sbjct: 64 LFKDKVVLDVGSGTGIL-CMFAAKAGAR-KVIGIECSSI----SDYAVKIVKANKLD-HV 116
Query: 269 VQFVDGDGREGHAAEGPYDVIYVGGAVHHYPF---KLMDQ-------LKPGGVMW 313
V + G E D+I + + + F L L P G+++
Sbjct: 117 VTIIKGKVEEVELPVEKVDII-ISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 170
Score = 33.5 bits (76), Expect = 0.13
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 20/68 (29%)
Query: 375 FYDDLDVHAQALEILKDY---------------LKPGAKVLDIGSGSGYLTACMAHMVGP 419
Y +H E+LKD L VLD+GSG+G L A G
Sbjct: 34 SYAHFGIH---EELLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGIL-CMFAAKAGA 89
Query: 420 TGKVYAVE 427
KV +E
Sbjct: 90 R-KVIGIE 96
Score = 31.6 bits (71), Expect = 0.54
Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 14/104 (13%)
Query: 33 QDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG--KVIGIEHI 90
+D + ++ +M + L + K VLD+GSG T +L K G KVIGIE
Sbjct: 46 KDEVRTLTYRNSMFHN---RHLFKDKVVLDVGSG----TGILCMFAAKAGARKVIGIECS 98
Query: 91 PQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 134
++ N D + + G + L DII
Sbjct: 99 SISDYAV--KIVKANK---LDHVVTIIKGKVEEVELPVEKVDII 137
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III;
dimer, PLP, isomerase; HET: PLP; 1.70A
{Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A*
2zpu_A* 2zr8_A*
Length = 323
Score = 34.4 bits (80), Expect = 0.070
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 12/64 (18%)
Query: 371 HPNGFYDDLDVHA-Q---ALEILKDYLKPGAKVLDIGSG---SGYLTACMAHMVGPTGKV 423
P YD V A Q A E+ ++ A + +G G SG +A A P +V
Sbjct: 150 PP---YDHPHVLAGQGTAAKELFEEVGPLDALFVCLGGGGLLSG--SALAARHFAPNCEV 204
Query: 424 YAVE 427
Y VE
Sbjct: 205 YGVE 208
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand
complex, cytoplasm, lipid synthesis, methyltransferase;
HET: D22; 2.39A {Mycobacterium tuberculosis} PDB:
1kpi_A*
Length = 302
Score = 34.1 bits (79), Expect = 0.089
Identities = 25/129 (19%), Positives = 34/129 (26%), Gaps = 44/129 (34%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTG-KVYAV-------EHIEDLVAQANKSMHTYY 260
L+PG +LDIG G G M H V V + H + + + +
Sbjct: 70 LEPGMTLLDIGCGWGST---MRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSP----- 121
Query: 261 PNLMEGGRVQFVDGDGREGHAAEGPYDVI--------------YVGGAVHHYP--FKLMD 304
R + E + P D I G Y FK
Sbjct: 122 ------RRKEVRIQGWEE---FDEPVDRIVSLGAFEHFADGAGDAG--FERYDTFFKKFY 170
Query: 305 Q-LKPGGVM 312
G M
Sbjct: 171 NLTPDDGRM 179
Score = 31.8 bits (73), Expect = 0.48
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 368 YWYHPNGFYDDLDVHAQ----ALEILKDYLKPGAKVLDIGSGSGYL 409
Y+ P+ L+ AQ L + K L+PG +LDIG G G
Sbjct: 45 YFERPD---MTLE-EAQYAKRKLALDKLNLEPGMTLLDIGCGWGST 86
Score = 28.0 bits (63), Expect = 7.7
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 54 LTEGKKVLDIGSGNGYFTALLAWCVGKTG-KVIGI 87
L G +LDIG G G + + V + VIG+
Sbjct: 70 LEPGMTLLDIGCGWG---STMRHAVAEYDVNVIGL 101
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase,
structural genomics, structural genomics consortium,
SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Length = 309
Score = 33.8 bits (78), Expect = 0.095
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 243
PG+ V+D + G T+ +A ++ GK++A +
Sbjct: 101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFD 134
Score = 33.8 bits (78), Expect = 0.095
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 394 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVE 427
PG+ V+D + G T+ +A ++ GK++A +
Sbjct: 101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFD 134
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP;
1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Length = 346
Score = 34.1 bits (79), Expect = 0.10
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 12/64 (18%)
Query: 371 HPNGFYDDLDVHA-Q---ALEILKDYLKPGAKVLDIGSG---SGYLTACMAHMVGPTGKV 423
HP + V A Q ALE+L A V+ +G G +G A + P+ KV
Sbjct: 152 HP---NQEPAVIAGQGTIALEVLNQVPLVDALVVPVGGGGMLAG--IAITVKALKPSVKV 206
Query: 424 YAVE 427
YA E
Sbjct: 207 YAAE 210
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto
dimethyladenosine transferase, structural genomics,
structural genomics consortium; 1.89A {Plasmodium
falciparum}
Length = 299
Score = 33.9 bits (78), Expect = 0.11
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQ-ANKSMHTYYPNL 263
+K VL+IG G+G LT + + KV ++ ++++ + ++ Y NL
Sbjct: 40 IKSSDIVLEIGCGTGNLTVKLLPLA---KKVITIDIDSRMISEVKKRCLYEGYNNL 92
Score = 33.9 bits (78), Expect = 0.11
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQ-ANKSMHTYYPNL 447
+K VL+IG G+G LT + + KV ++ ++++ + ++ Y NL
Sbjct: 40 IKSSDIVLEIGCGTGNLTVKLLPLA---KKVITIDIDSRMISEVKKRCLYEGYNNL 92
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP:
c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A*
Length = 278
Score = 33.8 bits (77), Expect = 0.11
Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 14/135 (10%)
Query: 205 LKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLM 264
+ KP V+D+ +G G+L+ +A KV A+E +++ +L
Sbjct: 119 MAKVAKPDELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENI-----HLN 171
Query: 265 E-GGRVQFVDGDGREGHAAEGPYDVIYVG---GAVHHYPFKLMDQLKPGGVM-WFTIGNA 319
+ R+ + D R+ E D I +G P K + K G ++ +
Sbjct: 172 KVEDRMSAYNMDNRD-FPGENIADRILMGYVVRTHEFIP-KALSIAKDGAIIHYHNTVPE 229
Query: 320 EEMLKNNRRTESNLA 334
+ M + T +
Sbjct: 230 KLMPREPFETFKRIT 244
Score = 28.4 bits (63), Expect = 5.3
Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 12/128 (9%)
Query: 24 YGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGK 83
G + + +++ + V+D+ +G G+ + +A V K
Sbjct: 95 NGIKYKLDVAKIMFSPANVKER--VRMAKVAKPDELVVDMFAGIGHLSLPIA--VYGKAK 150
Query: 84 VIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVG---GSI 140
VI IE P + N+ + R+ D R + E D I +G +
Sbjct: 151 VIAIEKDPYTFKFLVENIHLNKV----EDRMSAYNMDNRD-FPGENIADRILMGYVVRTH 205
Query: 141 EDIPEGVR 148
E IP+ +
Sbjct: 206 EFIPKALS 213
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet,
methyltransferase fold, structura genomics, transferase;
HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Length = 207
Score = 33.1 bits (75), Expect = 0.12
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
Query: 44 AMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVIS 103
++ S EGK V D+G+G G + +G +VI +E + V N+
Sbjct: 37 ELLWLAYSLGDIEGKVVADLGAGTGVLSYGAL-LLG-AKEVICVEVDKEAVDVLIENLGE 94
Query: 104 GNPEFVKDGRIKFVLGDGRKGYLDEAPYDII 134
G+ K +GD + + DI+
Sbjct: 95 ------FKGKFKVFIGDVSE---FNSRVDIV 116
Score = 30.4 bits (68), Expect = 0.96
Identities = 27/167 (16%), Positives = 55/167 (32%), Gaps = 37/167 (22%)
Query: 212 GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNL-MEGGRVQ 270
G V D+G+G+G L+ + +V VE ++ V + NL G+ +
Sbjct: 50 GKVVADLGAGTGVLSYGALLL--GAKEVICVEVDKEAVDVLIE-------NLGEFKGKFK 100
Query: 271 FVDGDGREGHAAEGPYDVI------YVGGAVHHYPFKLMDQLKPGGVMWFTIGNAEEMLK 324
GD E D++ PF L+ + V++ + + K
Sbjct: 101 VFIGDVSE---FNSRVDIVIMNPPFGSQRKHADRPF-LLKAFEISDVVY-----SIHLAK 151
Query: 325 NNRRTESNLAVVKAHKKDHGEWEEEFMGRLWRLPALASVEEQKYWYH 371
++ +HG + +P ++++H
Sbjct: 152 -----PEVRRFIEKFSWEHGFVVTHRLTTKIEIPL-------QFFFH 186
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 33.2 bits (75), Expect = 0.14
Identities = 16/121 (13%), Positives = 30/121 (24%), Gaps = 24/121 (19%)
Query: 215 VLDIGSGSGYLTACMAHMVGPTGKVYAVEHIED-----LVAQANKSMHTYYPNLMEGGRV 269
+D+G+G G +A ++ +++ K N V
Sbjct: 28 HIDLGTGDGRNIYKLAIN-DQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSN------V 80
Query: 270 QFVDGDGRE-GHAAEGPYDVIYV----GGAVHH----YPFKLMDQ---LKPGGVMWFTIG 317
FV + D I + G + + L + K F
Sbjct: 81 VFVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTT 140
Query: 318 N 318
Sbjct: 141 Y 141
Score = 31.7 bits (71), Expect = 0.35
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 60 VLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNPEFVKDGR--IKFV 117
+D+G+G+G LA + IGI+ + + + + K G + FV
Sbjct: 28 HIDLGTGDGRNIYKLA-INDQNTFYIGIDPVKENLFDI---SKKIIKKPSKGGLSNVVFV 83
Query: 118 LGDGRK 123
+
Sbjct: 84 IAAAES 89
Score = 28.2 bits (62), Expect = 4.7
Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 6/54 (11%)
Query: 399 VLDIGSGSGYLTACMAHMVGPTGKVYAVEHIED-----LVAQANKSMHTYYPNL 447
+D+G+G G +A ++ +++ K N+
Sbjct: 28 HIDLGTGDGRNIYKLAIN-DQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNV 80
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold,
beta-barrel, symmetric arginine dimethylase, SAM
binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB:
3ua4_A
Length = 745
Score = 33.8 bits (76), Expect = 0.15
Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 19/105 (18%)
Query: 33 QDNTKFSKFQQAM--VLDDLSEELTEGKKVLDIGSGNGYFT--ALLAWCVGKTG------ 82
QD K+ + +A+ L DL + + + +G G G L +
Sbjct: 384 QDQIKYDVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQE 443
Query: 83 ----KVIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRK 123
K+ +E P + + + R+ + D R
Sbjct: 444 SLKVKLYIVEKNPNAIVTLKYMNVRT-----WKRRVTIIESDMRS 483
Score = 32.3 bits (72), Expect = 0.48
Identities = 19/140 (13%), Positives = 33/140 (23%), Gaps = 30/140 (21%)
Query: 199 AQALEILKDYLKPGAKVLDIGSGSGYL------------TACMAHMVGPTGKVYAVEHIE 246
AL+ L + + +G G G + K+Y VE
Sbjct: 397 VGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNP 456
Query: 247 DLVAQANKSMHTYYPNLMEGGRVQFVDGDGRE-----GHAAEGPYDVI--------YVGG 293
+ + + RV ++ D R D+I
Sbjct: 457 NAIVTLKYMNVRTW-----KRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNE 511
Query: 294 AVHHYPFKLMDQLKPGGVMW 313
+ LKP +
Sbjct: 512 LSPECLDGVTGFLKPTTISI 531
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral
enzyme structure; HET: SFG; 1.90A {Wesselsbron virus}
PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Length = 300
Score = 33.0 bits (75), Expect = 0.19
Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 28/122 (22%)
Query: 336 VKAHKKDHGEWEEEFMGRLW--RLPALASVEEQKYWYHPNGFYDDLDVHAQA-------- 385
+K H HG+ +G +W +L L ++ Y + + A+
Sbjct: 1 MKHHHHHHGKAAGVTLGEVWKRQLNMLGK--QEFERYKVSDITEVDRTAARRYLKEGRTD 58
Query: 386 ------------LEIL-KDYLKPGAKVLDIGSGSG---YLTACMAHMVGPTGKVYAVEHI 429
+ + YL+ +VLD+G G G Y A ++ G +E
Sbjct: 59 VGISVSRGAAKIRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGH 118
Query: 430 ED 431
E
Sbjct: 119 EK 120
Score = 32.6 bits (74), Expect = 0.22
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 202 LEIL-KDYLKPGAKVLDIGSGSG---YLTACMAHMVGPTGKVYAVEHIED 247
+ + YL+ +VLD+G G G Y A ++ G +E E
Sbjct: 71 RWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEK 120
Score = 29.1 bits (65), Expect = 3.2
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 54 LTEGKKVLDIGSGNG---YFTALLAWCVGKTGKVIGIE--HIPQLVQRATHNVI 102
L +VLD+G G G Y+ A + G +GIE P +Q N++
Sbjct: 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIV 132
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target
base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET:
5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27
d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A*
2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Length = 421
Score = 33.1 bits (75), Expect = 0.20
Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 17/92 (18%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN------------ 100
E G +VL+ +G F G + +G+E P+ +
Sbjct: 36 EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWEP 95
Query: 101 -----VISGNPEFVKDGRIKFVLGDGRKGYLD 127
+I GNP + G K D
Sbjct: 96 GEAFDLILGNPPYGIVGEASKYPIHVFKAVKD 127
Score = 27.7 bits (61), Expect = 9.7
Identities = 21/126 (16%), Positives = 31/126 (24%), Gaps = 22/126 (17%)
Query: 210 KPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEG--- 266
G +VL+ G G + VE I+ + +
Sbjct: 38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVE-IDPKALDLPPWAEGILADFLLWEPG 96
Query: 267 ------------GRVQFVDGDGREGHAAEGPY----DVIYVGGAVHHYPF--KLMDQLKP 308
G V A + G + F K + LKP
Sbjct: 97 EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP 156
Query: 309 GGVMWF 314
GGV+ F
Sbjct: 157 GGVLVF 162
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 33.0 bits (75), Expect = 0.26
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 196 KVHAQALEILKDYLKPGAKVLDI 218
+ H Q + + ++KPG +++I
Sbjct: 174 EAHRQVRKYVMSWIKPGMTMIEI 196
Score = 32.6 bits (74), Expect = 0.32
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 380 DVHAQALEILKDYLKPGAKVLDI 402
+ H Q + + ++KPG +++I
Sbjct: 174 EAHRQVRKYVMSWIKPGMTMIEI 196
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.27
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 20/45 (44%)
Query: 324 KNN-RRTESNLAVVKAHKKDHGEWEEEFMGRLWRLPAL---ASVE 364
K ++ +++L K + D PAL A++E
Sbjct: 19 KQALKKLQASL---KLYADDSA-------------PALAIKATME 47
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus
furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A
1xgo_A 1wkm_A 2dfi_A
Length = 295
Score = 32.2 bits (74), Expect = 0.30
Identities = 4/23 (17%), Positives = 11/23 (47%)
Query: 196 KVHAQALEILKDYLKPGAKVLDI 218
++ + E +PG +L++
Sbjct: 11 EIAKKVREKAIKLARPGMLLLEL 33
Score = 31.8 bits (73), Expect = 0.42
Identities = 4/23 (17%), Positives = 11/23 (47%)
Query: 380 DVHAQALEILKDYLKPGAKVLDI 402
++ + E +PG +L++
Sbjct: 11 EIAKKVREKAIKLARPGMLLLEL 33
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription
factor, transcription initiation; 2.60A {Saccharomyces
cerevisiae} SCOP: c.66.1.24
Length = 353
Score = 32.6 bits (74), Expect = 0.30
Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 10/79 (12%)
Query: 199 AQALEILKDYLKP-GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMH 257
L++ K Y P KVLD+ G G +A + P + +E L
Sbjct: 45 FDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCP-RQYSLLEKRSSLYK------- 96
Query: 258 TYYPNLMEGGRVQFVDGDG 276
+ EG +Q + D
Sbjct: 97 -FLNAKFEGSPLQILKRDP 114
Score = 31.1 bits (70), Expect = 0.79
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 383 AQALEILKDYLKP-GAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLV 433
L++ K Y P KVLD+ G G +A + P + +E L
Sbjct: 45 FDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCP-RQYSLLEKRSSLY 95
Score = 28.0 bits (62), Expect = 8.4
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 3/40 (7%)
Query: 56 EGKKVLDIGSGNGYFT-ALLAWCVGKTGKVIGIEHIPQLV 94
E KVLD+ G G + + +E L
Sbjct: 58 EELKVLDLYPGVGIQSAIFYN--KYCPRQYSLLEKRSSLY 95
>2nw5_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2,
protein structure initiative; 2.18A {Encephalitozoon
cuniculi} PDB: 3cmk_A* 3d0d_A* 3fm3_A 3fmq_A* 3fmr_A*
Length = 360
Score = 32.4 bits (74), Expect = 0.31
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 196 KVHAQALEILKDYLKPGAKVLDI 218
+ H +A ++ ++PG +L+I
Sbjct: 55 EAHRRARYRVQSIVRPGITLLEI 77
Score = 32.1 bits (73), Expect = 0.35
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 380 DVHAQALEILKDYLKPGAKVLDI 402
+ H +A ++ ++PG +L+I
Sbjct: 55 EAHRRARYRVQSIVRPGITLLEI 77
Score = 29.0 bits (65), Expect = 3.3
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 9/80 (11%)
Query: 373 NGFYDDL-DVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIED 431
+ L + E L +V DIG ++ V G+++ + I D
Sbjct: 151 KENLEPLLVAAREGTETGIKSLGVDVRVCDIGRDIN--EVISSYEVEIGGRMWPIRPISD 208
Query: 432 LVAQANKSMHTYYPNLMEGG 451
L H+ + GG
Sbjct: 209 LH------GHSISQFRIHGG 222
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 32.0 bits (72), Expect = 0.31
Identities = 12/91 (13%), Positives = 31/91 (34%), Gaps = 11/91 (12%)
Query: 38 FSKFQQAMVLDDLSEELTEGKK-VLDIGSGNGYFTALLAWCVGKTGKVIGIE----HIPQ 92
K Q + + ++ VLD+G+G+G +A V+ ++ + +
Sbjct: 8 VGKRVQEFSDAEFEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRL-VVALDADKSRMEK 66
Query: 93 LVQRATHNVISGNPEFVKDGRIKFVLGDGRK 123
+ +A G + ++ +
Sbjct: 67 ISAKAAAKPAKGGLPN-----LLYLWATAER 92
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 32.4 bits (74), Expect = 0.31
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 196 KVHAQALEILKDYLKPGAKVLDI 218
+ + L L + G VL +
Sbjct: 33 DIANRVLRSLVEASSSGVSVLSL 55
Score = 32.0 bits (73), Expect = 0.42
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 380 DVHAQALEILKDYLKPGAKVLDI 402
D+ + L L + G VL +
Sbjct: 33 DIANRVLRSLVEASSSGVSVLSL 55
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.3 bits (70), Expect = 0.41
Identities = 11/40 (27%), Positives = 13/40 (32%), Gaps = 16/40 (40%)
Query: 345 EWEEEFMGRL-------------WRLPALASVEEQKYWYH 371
+W EE RL WR A +EE W
Sbjct: 89 KWREEQRKRLQELDAASKVMEQEWREKAKKDLEE---WNQ 125
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle
structural genomics center for infectio disease; 1.75A
{Burkholderia pseudomallei}
Length = 279
Score = 31.7 bits (73), Expect = 0.42
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 209 LKPGAKVLDIGSGSGYLT-ACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNL 263
+ G ++++IG G G LT +A + P ++AVE DL+ + + + L
Sbjct: 40 PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQ---RFGELL 92
Score = 31.7 bits (73), Expect = 0.42
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 393 LKPGAKVLDIGSGSGYLT-ACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNL 447
+ G ++++IG G G LT +A + P ++AVE DL+ + + + L
Sbjct: 40 PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQ---RFGELL 92
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative,
RSGI, structural genomics, lyase; HET: PLP; 2.15A
{Thermus thermophilus} SCOP: c.79.1.1
Length = 311
Score = 31.7 bits (73), Expect = 0.50
Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 12/66 (18%)
Query: 371 HPNGFYDDLDVHA-Q---ALEILKDYLKPGAKVLDIG---SGSGYL--TACMAHMVGPTG 421
HP +DD V A Q LE+L + G + G G L A + PT
Sbjct: 141 HP---FDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTT 197
Query: 422 KVYAVE 427
V VE
Sbjct: 198 LVLGVE 203
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem
adenosyl-L-methionine, rRNA, methyltransferase,
RNA-binding processing; HET: AMP; 1.60A
{Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A*
3gry_A* 3fyd_A 3fyc_A*
Length = 295
Score = 31.4 bits (72), Expect = 0.52
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNL 263
L VL+IG G G LT +A KVY +E + L ANK Y N+
Sbjct: 48 LTKDDVVLEIGLGKGILTEELAKNA---KKVYVIEIDKSLEPYANKLKE-LYNNI 98
Score = 31.4 bits (72), Expect = 0.52
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNL 447
L VL+IG G G LT +A KVY +E + L ANK Y N+
Sbjct: 48 LTKDDVVLEIGLGKGILTEELAKNA---KKVYVIEIDKSLEPYANKLKE-LYNNI 98
Score = 28.0 bits (63), Expect = 7.3
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIE 88
LT+ VL+IG G G T LA KV IE
Sbjct: 47 NLTKDDVVLEIGLGKGILTEELA---KNAKKVYVIE 79
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 31.2 bits (71), Expect = 0.73
Identities = 25/147 (17%), Positives = 44/147 (29%), Gaps = 27/147 (18%)
Query: 179 YWDIPQSLGFGSVMSSP-KVHAQAL-EILKDYLKPGAKVLDIGSGSG-YLTACMAHMVGP 235
+ P + F MS AQ + +++ + KVLDI + G + A H
Sbjct: 131 SPEHPVWVQFAKAMSPMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNA 190
Query: 236 TGKVY----AVEHIEDLVAQANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGPYDVIYV 291
+E ++ R + G E YD++ +
Sbjct: 191 EIFGVDWASVLEVAKENARIQG-----------VASRYHTIAGSAFEVDYGND-YDLVLL 238
Query: 292 GGAVHHYPF--------KLMDQLKPGG 310
+HH+ K+ L G
Sbjct: 239 PNFLHHFDVATCEQLLRKIKTALAVEG 265
Score = 28.9 bits (65), Expect = 3.6
Identities = 20/140 (14%), Positives = 39/140 (27%), Gaps = 35/140 (25%)
Query: 1 MLAVDRGHYTTWRPYANCITNIGYGAHMQAPF-QDNTKFSKFQQAM----------VLDD 49
+ + + G + ++ + +F +AM +
Sbjct: 99 EFLLSPMITNGFNDLTAAVLKGGTAISSEGTLSPEHPVWVQFAKAMSPMMANPAQLIAQL 158
Query: 50 LSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRAT-----HNVISG 104
++E E KVLDI + +G F +A +H P V+
Sbjct: 159 VNENKIEPLKVLDISASHGLFGIAVA------------QHNPNA--EIFGVDWAS-VLEV 203
Query: 105 NPEFVKD----GRIKFVLGD 120
E + R + G
Sbjct: 204 AKENARIQGVASRYHTIAGS 223
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil,
contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1
a.7.1.1
Length = 250
Score = 30.8 bits (69), Expect = 0.83
Identities = 9/51 (17%), Positives = 23/51 (45%)
Query: 316 IGNAEEMLKNNRRTESNLAVVKAHKKDHGEWEEEFMGRLWRLPALASVEEQ 366
E++L ++L V+A + H +E + R+ +A++ ++
Sbjct: 30 AYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQE 80
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research; 2.33A {Bacteroides vulgatus}
Length = 363
Score = 30.8 bits (70), Expect = 1.1
Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 19/129 (14%)
Query: 192 MSSPKVHAQALEILKDYLKPGAKVLDIGSGSG-YLTACMAHMVGPTGKVYAVEHIEDLVA 250
S + +ALEI+ ++LDIG +G + T C+ + + DL
Sbjct: 162 FYSDQSFGKALEIVF--SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIV------DL-P 212
Query: 251 QANKSMHTYYPNLMEGGRVQFVDGDGREGHAAEGP-YDVIYVGGAVHHYPF--------K 301
Q + M L R+ + + +D +++ + + +
Sbjct: 213 QQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTR 272
Query: 302 LMDQLKPGG 310
+ +
Sbjct: 273 VAQSIGKDS 281
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET:
SAM; 2.00A {Escherichia coli}
Length = 200
Score = 30.2 bits (67), Expect = 1.1
Identities = 14/93 (15%), Positives = 33/93 (35%), Gaps = 8/93 (8%)
Query: 205 LKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLM 264
+ +K + +LD G G L + +A + +A + +
Sbjct: 43 VFGNIKHVSSILDFGCGFNPLALYQWN-ENEKIIYHAYDIDRAEIAFLSSIIGKLKT--- 98
Query: 265 EGGRVQFVDGDGREGHAAEGPYDVIYVGGAVHH 297
+ +F++ E +G YDV+++ +
Sbjct: 99 -TIKYRFLNK---ESDVYKGTYDVVFLLKMLPV 127
Score = 27.9 bits (61), Expect = 7.0
Identities = 8/52 (15%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 389 LKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSM 440
+ +K + +LD G G L + +A + +A + +
Sbjct: 43 VFGNIKHVSSILDFGCGFNPLALYQWN-ENEKIIYHAYDIDRAEIAFLSSII 93
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 1.80A
{Neisseria gonorrhoeae}
Length = 258
Score = 30.5 bits (68), Expect = 1.2
Identities = 24/143 (16%), Positives = 44/143 (30%), Gaps = 14/143 (9%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGG- 267
V D +G G + +A + V A E + + + N
Sbjct: 81 HTAHPTVWDATAGLGRDSFVLASLG---LTVTAFEQHPAVACLLSDGIRRALLNPETQDT 137
Query: 268 --RVQFVDGDGRE----GHAAEGPYDVIYVGGAVHHYPFKLMDQLKPGGVMWFTIG---N 318
R+ G+ E +G D++Y+ ++ K K +G +
Sbjct: 138 AARINLHFGNAAEQMPALVKTQGKPDIVYL-DPMYPERRKSAAVKKEMAYFHRLVGEAQD 196
Query: 319 AEEMLKNNRRTESNLAVVKAHKK 341
+L R+T VVK +
Sbjct: 197 EVVLLHTARQTAKKRVVVKRPRL 219
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 30.8 bits (70), Expect = 1.3
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 5/78 (6%)
Query: 189 GSVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTAC-MAHMVGPTGKVYAVEHIED 247
G+ S P +++ K G +V+ + + Y A +A + G V +
Sbjct: 506 GADASLPDQL-TPEQVMDGKKKIGKRVVILNAD-TYFMAPSLAEKLATAGH--EVTIVSG 561
Query: 248 LVAQANKSMHTYYPNLME 265
+ YPN+M
Sbjct: 562 VHLANYMHFTLEYPNMMR 579
Score = 30.4 bits (69), Expect = 1.8
Identities = 16/99 (16%), Positives = 29/99 (29%), Gaps = 8/99 (8%)
Query: 352 GRLWRLPALASVEEQKYWYHPNGFYDDLDVHAQALEILKDYLKPGAKVLDIGSGSGYLTA 411
G W + G L +++ K G +V+ + + Y A
Sbjct: 488 GARWNTDGTNCLTHDPIP----GADASLPDQLTPEQVMDGKKKIGKRVVILNAD-TYFMA 542
Query: 412 C-MAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLME 449
+A + G V + + YPN+M
Sbjct: 543 PSLAEKLATAGH--EVTIVSGVHLANYMHFTLEYPNMMR 579
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo
sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A*
2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A*
3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A*
3kqm_A* 3kqo_A* 3kqp_A* ...
Length = 289
Score = 30.2 bits (67), Expect = 1.7
Identities = 35/233 (15%), Positives = 71/233 (30%), Gaps = 33/233 (14%)
Query: 24 YGAHMQAPFQDNTKFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGK 83
A + + ++ + + G+ ++DIGSG + L A +
Sbjct: 39 NYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFE--D 96
Query: 84 VIGIEHIPQLVQRATHNVISGNPEFVKDGRIKFVLGDGRKGYLDEAPYDIIHVGGSIEDI 143
+ + + Q + F + I G +D
Sbjct: 97 ITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHAC-------------LIEGKGECWQDK 143
Query: 144 PEGVRFGHIASPKVESVMR-SIDRRRFIERPIMNNPYWDIPQSLG-FGSVMSSPKVHAQA 201
+R +V+ V+ + + + + D S +V +A
Sbjct: 144 ERQLR------ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRA 197
Query: 202 LEILKDYLKPGAKVLDIG--SGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQA 252
L+ + L+PG +L IG S Y + G ++ V E+ V +A
Sbjct: 198 LDHITTLLRPGGHLLLIGALEESWY-------LAGE-ARLTVVPVSEEEVREA 242
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine,
phosphorylation, M7G, spout MT, tRNA processing; HET:
SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Length = 246
Score = 29.7 bits (67), Expect = 2.0
Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Query: 47 LDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHNVISGNP 106
+ + ++T+ + DIG G G L+ + ++G+E Q+ +I+
Sbjct: 40 KNAENGQMTKKVTIADIGCGFGGLMIDLSPAFPEDL-ILGMEIRVQVTNYVEDRIIALRN 98
Query: 107 EFVKDGR---IKFVLGDGRK 123
I + G+ K
Sbjct: 99 NTASKHGFQNINVLRGNAMK 118
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus
pneumoniae} SCOP: c.66.1.24
Length = 245
Score = 29.4 bits (67), Expect = 2.0
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 10/67 (14%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGR 268
LK V +IG+G G+LT +A + +V ++E L +++ + R
Sbjct: 27 LKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKLN-------TR 76
Query: 269 VQFVDGD 275
V + D
Sbjct: 77 VTLIHQD 83
Score = 29.4 bits (67), Expect = 2.1
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNL 447
LK V +IG+G G+LT +A + +V ++E L +++ + +
Sbjct: 27 LKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKL-NTRV 77
Score = 28.3 bits (64), Expect = 4.7
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIE 88
L E V +IG+G G+ T LA + +V IE
Sbjct: 26 NLKETDTVYEIGTGKGHLTTKLA---KISKQVTSIE 58
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor
analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB:
1qan_A* 1qao_A* 1qaq_A* 2erc_A
Length = 244
Score = 29.4 bits (67), Expect = 2.4
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 53 ELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIE 88
L E + +IGSG G+FT L + V IE
Sbjct: 27 RLNEHDNIFEIGSGKGHFTLELV---QRCNFVTAIE 59
Score = 28.6 bits (65), Expect = 4.2
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNL 263
L + +IGSG G+ T + V A+E L + + N
Sbjct: 28 LNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLV-DHDNF 78
Score = 28.6 bits (65), Expect = 4.2
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNL 447
L + +IGSG G+ T + V A+E L + + N
Sbjct: 28 LNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLV-DHDNF 78
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone
methyltransferase, nucleosome; HET: SAH; 2.20A
{Saccharomyces cerevisiae} SCOP: c.66.1.31
Length = 433
Score = 29.4 bits (65), Expect = 2.8
Identities = 24/131 (18%), Positives = 39/131 (29%), Gaps = 20/131 (15%)
Query: 194 SPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQAN 253
P + + + LK G +D+GSG G A G + E ++D
Sbjct: 227 LPNFLSDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTI 283
Query: 254 KSMHTYYPNLMEGG----------RVQFVDGDGREGHAAEGPYDVIYV-----GGAVHHY 298
G + FVD + + DVI V ++
Sbjct: 284 LQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQC--DVILVNNFLFDEDLNKK 341
Query: 299 PFKLMDQLKPG 309
K++ K G
Sbjct: 342 VEKILQTAKVG 352
Score = 27.9 bits (61), Expect = 8.4
Identities = 12/76 (15%), Positives = 22/76 (28%), Gaps = 9/76 (11%)
Query: 30 APFQDNT--KFSKFQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTG--KVI 85
F + + + V +L +G +D+GSG G + + G
Sbjct: 216 KAFSNYVYGELLPNFLSDVYQQC--QLKKGDTFMDLGSGVG---NCVVQAALECGCALSF 270
Query: 86 GIEHIPQLVQRATHNV 101
G E +
Sbjct: 271 GCEIMDDASDLTILQY 286
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA
methyltransferase, mtase, anti resistance,
methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus}
PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Length = 249
Score = 29.0 bits (66), Expect = 2.8
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNL 263
++ G V+++G G+G LT + P K+Y +E ++V L
Sbjct: 29 IEEGNTVVEVGGGTGNLTKVLLQH--PLKKLYVIELDREMVENLKS---IGDERL 78
Score = 29.0 bits (66), Expect = 2.8
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNL 447
++ G V+++G G+G LT + P K+Y +E ++V L
Sbjct: 29 IEEGNTVVEVGGGTGNLTKVLLQH--PLKKLYVIELDREMVENLKS---IGDERL 78
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin,
phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Length = 334
Score = 29.1 bits (66), Expect = 3.0
Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 22/95 (23%)
Query: 188 FGSVMSSPKVHAQALEILKDYLKPGAKVLDIGSGSGYLTACMA----HMVGPTGKVYAVE 243
F M + + EI + G +D+G GSG LT + G +
Sbjct: 146 FLLAMKA--SNLAFHEIPRLLDFRGRSFVDVGGGSGELTKAILQAEPSA---RGVML--- 197
Query: 244 HIEDL---VAQANKSMHTYYPNLMEGGRVQFVDGD 275
D + A +L+ G RV V GD
Sbjct: 198 ---DREGSLGVA----RDNLSSLLAGERVSLVGGD 225
Score = 29.1 bits (66), Expect = 3.2
Identities = 20/141 (14%), Positives = 40/141 (28%), Gaps = 35/141 (24%)
Query: 1 MLAVDRGHYTTWRPYANCIT------NIGYGAHMQAPFQDNTKFSK-FQQAMVLDDLSEE 53
+L + W P + + +G + + + F AM +L+
Sbjct: 99 VLFYGEEFHAAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAMKASNLAFH 158
Query: 54 LT------EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRAT----HNVIS 103
G+ +D+G G+G T + + P R +
Sbjct: 159 EIPRLLDFRGRSFVDVGGGSGELTKAIL------------QAEPSA--RGVMLDREGSLG 204
Query: 104 GNPEFVK----DGRIKFVLGD 120
+ + R+ V GD
Sbjct: 205 VARDNLSSLLAGERVSLVGGD 225
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes}
SCOP: c.66.1.45
Length = 344
Score = 28.9 bits (65), Expect = 3.8
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 6/63 (9%)
Query: 210 KPGAKVLDIGSGSG-YLTACMAHM---VGPTGKVYAVEHIEDL--VAQANKSMHTYYPNL 263
K +LD G+ LT + + V+ + L +A + L
Sbjct: 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTL 188
Query: 264 MEG 266
+
Sbjct: 189 LHQ 191
Score = 28.9 bits (65), Expect = 3.8
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 6/63 (9%)
Query: 394 KPGAKVLDIGSGSG-YLTACMAHM---VGPTGKVYAVEHIEDL--VAQANKSMHTYYPNL 447
K +LD G+ LT + + V+ + L +A + L
Sbjct: 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTL 188
Query: 448 MEG 450
+
Sbjct: 189 LHQ 191
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU
genomics, PSI-2, protein structure initiative; HET: SAH;
2.40A {Micromonospora echinospora}
Length = 348
Score = 28.8 bits (65), Expect = 4.2
Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 15/90 (16%)
Query: 1 MLAVDRGHYTTWRPYANCIT------NIGYGAHMQAPFQDNTKFSK-FQQAM------VL 47
++ D +T A+ + +G+ + A F + + + + M
Sbjct: 114 LMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEH 173
Query: 48 DDLSEE--LTEGKKVLDIGSGNGYFTALLA 75
L+ V D+G G G F +
Sbjct: 174 LILARAGDFPATGTVADVGGGRGGFLLTVL 203
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Escherichia coli} SCOP: c.66.1.20
Length = 207
Score = 28.4 bits (64), Expect = 4.7
Identities = 7/24 (29%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 46 VLDDLS-EELTEGKKVLDIGSGNG 68
+LD + +G++ +D+G+G G
Sbjct: 54 ILDSIVVAPYLQGERFIDVGTGPG 77
Score = 27.3 bits (61), Expect = 9.4
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 209 LKPGAKVLDIGSGSG 223
G + +D+G+G G
Sbjct: 63 YLQGERFIDVGTGPG 77
Score = 27.3 bits (61), Expect = 9.4
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 393 LKPGAKVLDIGSGSG 407
G + +D+G+G G
Sbjct: 63 YLQGERFIDVGTGPG 77
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural
genomics, PSI, protein structure initiative; 1.80A
{Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Length = 396
Score = 28.6 bits (64), Expect = 5.1
Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 41 FQQAMVLDDLSEELTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRATHN 100
Q L + + G +VLD+ + G F + + +VIGI+ P+ ++ A N
Sbjct: 202 LDQRENRLALEKWVQPGDRVLDVFTYTGGFA--IHAAIAGADEVIGIDKSPRAIETAKEN 259
Query: 101 VISGNPEFVKDGRIKFVLGDGRKGYLDEA-----PYDII 134
+ R+KF++G + +++ +DI+
Sbjct: 260 AKLNGV----EDRMKFIVGSAFE-EMEKLQKKGEKFDIV 293
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog,
methyltransferase, structural genomics, NPPSFA; HET:
SFG; 2.55A {Pyrococcus horikoshii}
Length = 450
Score = 28.4 bits (64), Expect = 6.3
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 380 DVHAQ-ALEILKDYLKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAV 426
+ + A +L KPG V+D+ + G T +A ++ GK+YA
Sbjct: 245 EEASAVASIVLD--PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAF 290
Score = 28.4 bits (64), Expect = 6.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAV 242
KPG V+D+ + G T +A ++ GK+YA
Sbjct: 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAF 290
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis;
1.98A {Coxiella burnetii}
Length = 255
Score = 28.2 bits (64), Expect = 6.3
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 10/67 (14%)
Query: 209 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVAQANKSMHTYYPNLMEGGR 268
+ +++IG G G LT + + VE DLVA K +
Sbjct: 27 PQKTDTLVEIGPGRGALTDYLLTEC---DNLALVEIDRDLVAFLQKKYNQQ-------KN 76
Query: 269 VQFVDGD 275
+ D
Sbjct: 77 ITIYQND 83
Score = 27.8 bits (63), Expect = 7.5
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 393 LKPGAKVLDIGSGSGYLTACMAHMVGPTGKVYAVEHIEDLVA 434
+ +++IG G G LT + + VE DLVA
Sbjct: 27 PQKTDTLVEIGPGRGALTDYLLTEC---DNLALVEIDRDLVA 65
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine,
transferase; HET: MSE SAH; 1.91A {Streptomyces
lavendulae} PDB: 3gxo_A*
Length = 369
Score = 28.1 bits (63), Expect = 6.6
Identities = 22/143 (15%), Positives = 40/143 (27%), Gaps = 37/143 (25%)
Query: 1 MLAVDRGHYTTWRPYANCIT------NIGYGAHMQAPFQDNTKFSK-FQQAM------VL 47
H+ W + + ++ G ++ K + F +AM
Sbjct: 132 RFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEA 191
Query: 48 DDLSEE--LTEGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIEHIPQLVQRAT----HNV 101
++ + +DIG G G A + + P L R T V
Sbjct: 192 GQVAAAYDFSGAATAVDIGGGRGSLMAAVL------------DAFPGL--RGTLLERPPV 237
Query: 102 ISGNPEFVK----DGRIKFVLGD 120
E + R + + GD
Sbjct: 238 AEEARELLTGRGLADRCEILPGD 260
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH
HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12
PDB: 1fpx_A* 2qyo_A*
Length = 352
Score = 28.2 bits (63), Expect = 6.7
Identities = 18/138 (13%), Positives = 33/138 (23%), Gaps = 32/138 (23%)
Query: 1 MLAVDRGHYTTWRPYANCITNIG-------YGAHMQAPFQDNTKFSK-FQQAM------- 45
+D ++ I G+ N +++ F AM
Sbjct: 116 ECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLI 175
Query: 46 --VLDDLSEELTEGKKVLDIGSGNGYF-TALLAWCVGKTGKVIGIEHIPQLVQRATHNVI 102
L D + ++D+G G G + V V+
Sbjct: 176 NLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQ-----------VV 224
Query: 103 SGNPEFVKDGRIKFVLGD 120
+ +V GD
Sbjct: 225 ENLSG---SNNLTYVGGD 239
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold
methyltransferase, tRNA modification,
S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A
{Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Length = 218
Score = 27.6 bits (62), Expect = 7.3
Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 14/71 (19%)
Query: 56 EGKKVLDIGSGNGYFTALLAWCVGKTGKVIGIE-HIP---QLVQRATHNVISGNPEFVKD 111
E L+IG G G +A + +GIE H P + A +S N
Sbjct: 34 EAPVTLEIGFGMGASLVAMAKDRPEQD-FLGIEVHSPGVGACLASAHEEGLS-N------ 85
Query: 112 GRIKFVLGDGR 122
++ + D
Sbjct: 86 --LRVMCHDAV 94
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock
proteins, 23S ribosomal RNA; HET: SAM; 1.50A
{Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Length = 180
Score = 27.4 bits (62), Expect = 7.4
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 10/47 (21%)
Query: 202 LEILKDY--LKPGAKVLDIGSGSG----YLTACMAHMVGPTGKVYAV 242
EI + KPG V+D+G+ G Y+ +G G++ A
Sbjct: 11 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYV----VTQIGGKGRIIAC 53
Score = 27.4 bits (62), Expect = 7.4
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 10/47 (21%)
Query: 386 LEILKDY--LKPGAKVLDIGSGSG----YLTACMAHMVGPTGKVYAV 426
EI + KPG V+D+G+ G Y+ +G G++ A
Sbjct: 11 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYV----VTQIGGKGRIIAC 53
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP
binding, binding, capsid protein; HET: GTA SAH; 1.45A
{Yellow fever virus} PDB: 3evb_A* 3evc_A* 3evd_A*
3eve_A* 3eva_A*
Length = 277
Score = 27.6 bits (61), Expect = 8.9
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 206 KDYLKPGAKVLDIGSGSG---YLTACMAHMVGPTGKVYAV 242
+ Y+K +V+D+G G G Y A + G G
Sbjct: 69 RGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGR 108
Score = 27.6 bits (61), Expect = 8.9
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 390 KDYLKPGAKVLDIGSGSG---YLTACMAHMVGPTGKVYAV 426
+ Y+K +V+D+G G G Y A + G G
Sbjct: 69 RGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGR 108
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ;
2.0A {Escherichia coli} SCOP: e.22.1.2
Length = 408
Score = 27.6 bits (62), Expect = 9.5
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 10/61 (16%)
Query: 163 SIDRRRFIERPIMNNPYWDIPQSLGFGSVMSSPKVHAQALEILKDYLKPGAKVLDI-GSG 221
++ ++ +NN P + FG A+ L++ + A+VL G G
Sbjct: 10 HLESTSLYKKAGLNNFNLHTPTRILFG---------KGAIAGLREQIPHDARVLITYGGG 60
Query: 222 S 222
S
Sbjct: 61 S 61
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.417
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,196,812
Number of extensions: 536841
Number of successful extensions: 2407
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2226
Number of HSP's successfully gapped: 568
Length of query: 492
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 395
Effective length of database: 3,993,456
Effective search space: 1577415120
Effective search space used: 1577415120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.0 bits)