BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7835
(205 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IXZ|B Chain B, Pig Gastric H+K+-Atpase Complexed With Aluminium
Fluoride
pdb|2XZB|B Chain B, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|B Chain B, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 290
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 22 RKDLGNTKWQNFKLCIYNPQTGEVFGRTPKSWGGIFLFYVIFYSILACLFAICMYVLMST 81
K + + + F+ +NP TG++ GRT W I L+YV FY +++ +FA+C+YVLM T
Sbjct: 6 EKKSCSQRMEEFQRYCWNPDTGQMLGRTLSRWVWISLYYVAFYVVMSGIFALCIYVLMRT 65
Query: 82 LTDEYPKLQ 90
+ P Q
Sbjct: 66 IDPYTPDYQ 74
>pdb|2ZXE|B Chain B, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
Length = 305
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 30 WQNFKLCIYNPQTGEVFGRTPKSWGGIFLFYVIFYSILACLFAICMYVLMSTLTDEYPKL 89
W+ F +++ + E GRT SW IFLFY+IFY LA +F + VL+ TL+D PK
Sbjct: 13 WKKF---LWDSEKKEFLGRTGSSWFKIFLFYLIFYGCLAGIFIGTIQVLLLTLSDFEPKY 69
Query: 90 Q 90
Q
Sbjct: 70 Q 70
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 153 YLSPIIAVRFRNPGVGTLINVECRAWAKNIRYKKSGLNREGSVHFELLLE 202
YL P++A++F N + +EC+ + +NI Y + R FE+ +E
Sbjct: 256 YLQPLLAIQFTNLTQNMELRIECKVYGENIDYSEKDRFRG---RFEVKIE 302
>pdb|3A3Y|B Chain B, Crystal Structure Of The Sodium-potassium Pump With
Bound Potassium And Ouabain
Length = 305
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 30 WQNFKLCIYNPQTGEVFGRTPKSWGGIFLFYVIFYSILACLFAICMYVLMSTLTDEYPKL 89
W+ F +++ + E GRT SW IFLFY+IFY LA +F + VL+ TL+D PK
Sbjct: 13 WKKF---LWDSEKKEFLGRTGSSWFKIFLFYLIFYGCLAGIFIGTIQVLLLTLSDFEPKY 69
Query: 90 Q 90
Q
Sbjct: 70 Q 70
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 153 YLSPIIAVRFRNPGVGTLINVECRAWAKNIRYKKSGLNREGSVHFELLLE 202
YL P++A++F N + +EC+ + +NI Y + R FE+ +E
Sbjct: 256 YLQPLLAIQFTNLTQNMELRIECKVYGENIDYSEKDRFRG---RFEVKIE 302
>pdb|3KDP|B Chain B, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|D Chain D, Crystal Structure Of The Sodium-potassium Pump
Length = 286
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 39 NPQTGEVFGRTPKSWGGIFLFYVIFYSILACLFAICMYVLMSTLTDEYPKLQ 90
N + E GRT SW I LFYVIFY LA +F + V++ T+++ P Q
Sbjct: 1 NSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQ 52
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 110 NWRTIWVSCSGADPHDTETMGDVDXXXXXXXXXXXXXXTNTIG------YLSPIIAVRFR 163
N + V C+G D E +G ++ G YL P++AV+F
Sbjct: 188 NPYVLPVHCTGKRDEDKEKVGTMEYFGLGGYPGFPLQYYPYYGKLLQPKYLQPLMAVQFT 247
Query: 164 NPGVGTLINVECRAWAKNIRYKKS 187
N + T I +EC+A+ +NI Y +
Sbjct: 248 NLTMDTEIRIECKAYGENIGYSEK 271
>pdb|3N23|B Chain B, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|D Chain D, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|B Chain B, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|D Chain D, Crystal Structure Of The Sodium-Potassium Pump
Length = 277
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 110 NWRTIWVSCSGADPHDTETMGDVDXXXXXXXXXXXXXXTNTIG------YLSPIIAVRFR 163
N + V C+G D E +G ++ G YL P++AV+F
Sbjct: 179 NPYVLPVHCTGKRDEDKEKVGTMEYFGLGGYPGFPLQYYPYYGKLLQPKYLQPLMAVQFT 238
Query: 164 NPGVGTLINVECRAWAKNIRYKKS 187
N + T I +EC+A+ +NI Y +
Sbjct: 239 NLTMDTEIRIECKAYGENIGYSEK 262
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 48 RTPKSWGGIFLFYVIFYSILACLFAICMYVLMSTLTDEYPKLQ 90
RT SW I LFYVIFY LA +F + V++ T+++ P Q
Sbjct: 1 RTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQ 43
>pdb|3B8E|B Chain B, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|D Chain D, Crystal Structure Of The Sodium-Potassium Pump
Length = 46
Score = 36.2 bits (82), Expect = 0.012, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 49 TPKSWGGIFLFYVIFYSILACLFAICMYVLMSTLTDEYPKLQ 90
T SW I LFYVIFY LA +F + V++ T+++ P Q
Sbjct: 1 TGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQ 42
>pdb|1YGG|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
From Actinobacillus Succinogenes
pdb|1YLH|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
From Actinobaccilus Succinogenes In Complex With
Manganese And Pyruvate
Length = 560
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 17 EWEYARKDLGNTKWQNFKLCIYNPQTGEVFGRTPKS 52
+W+ +DL N +NF NP+ ++ G PK+
Sbjct: 525 QWQVKAEDLANRFVKNFVKYTANPEAAKLVGAGPKA 560
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,644,058
Number of Sequences: 62578
Number of extensions: 254733
Number of successful extensions: 321
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 307
Number of HSP's gapped (non-prelim): 14
length of query: 205
length of database: 14,973,337
effective HSP length: 94
effective length of query: 111
effective length of database: 9,091,005
effective search space: 1009101555
effective search space used: 1009101555
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)