Query psy7835
Match_columns 205
No_of_seqs 135 out of 303
Neff 5.1
Searched_HMMs 13730
Date Fri Aug 16 20:06:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7835.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7835hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtt1 f.23.34.1 (T:1-30) Pho 65.0 3 0.00022 23.0 2.9 19 58-76 4-22 (30)
2 d2ifga1 b.1.1.4 (A:192-283) Hi 27.9 29 0.0021 21.7 3.7 26 155-180 2-29 (92)
3 d1fnla1 b.1.1.4 (A:3-86) Fc ga 17.9 29 0.0021 21.7 1.9 26 155-180 5-32 (84)
4 d2fcba1 b.1.1.4 (A:6-90) Fc ga 17.3 30 0.0022 21.5 1.9 26 155-180 4-31 (85)
5 d1xl4a2 f.14.1.1 (A:23-138) In 17.2 64 0.0047 21.5 3.9 24 52-75 23-46 (116)
6 d2oz4a1 b.1.1.3 (A:283-366) In 17.1 29 0.0021 23.5 1.8 25 156-180 4-28 (84)
7 d1goia3 d.26.3.1 (A:292-379) C 16.3 24 0.0018 23.4 1.2 12 35-46 75-86 (88)
8 d1t82a_ d.38.1.5 (A:) Putative 15.2 1.1E+02 0.0083 20.8 4.9 19 161-180 88-106 (143)
9 d1y88a2 c.52.1.30 (A:3-127) Hy 15.1 54 0.0039 22.3 3.0 18 167-184 42-59 (125)
10 d1iray3 b.1.1.4 (Y:205-311) Ty 14.5 44 0.0032 21.2 2.3 17 164-180 13-29 (107)
No 1
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=65.05 E-value=3 Score=23.05 Aligned_cols=19 Identities=21% Similarity=0.688 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7835 58 LFYVIFYSILACLFAICMY 76 (205)
Q Consensus 58 lFYlifY~~La~lFa~~m~ 76 (205)
+-|+..++||.++|.+.++
T Consensus 4 i~yv~ifac~i~lfffaif 22 (30)
T d2axtt1 4 ITYVFIFACIIALFFFAIF 22 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHH
Confidence 3477777888888866543
No 2
>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.94 E-value=29 Score=21.73 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=20.2
Q ss_pred CceEEEEeeCCC--CCcEEEEEEEeecC
Q psy7835 155 SPIIAVRFRNPG--VGTLINVECRAWAK 180 (205)
Q Consensus 155 sPLVAVqf~n~~--~n~~I~VeCkawAk 180 (205)
.|.+-++..+.. .++.+.++|.+.|.
T Consensus 2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~ 29 (92)
T d2ifga1 2 VPTLKVQVPNASVDVGDDVLLRCQVEGR 29 (92)
T ss_dssp CCEEEEECCSSCCBTTCCEEEEEEEECS
T ss_pred CCEEEEeCCCEEEeCCCEEEEeeeccCC
Confidence 377777876644 58999999999874
No 3
>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}
Probab=17.92 E-value=29 Score=21.68 Aligned_cols=26 Identities=4% Similarity=0.107 Sum_probs=18.6
Q ss_pred CceEEEEee--CCCCCcEEEEEEEeecC
Q psy7835 155 SPIIAVRFR--NPGVGTLINVECRAWAK 180 (205)
Q Consensus 155 sPLVAVqf~--n~~~n~~I~VeCkawAk 180 (205)
.|.|.++=. .+..++.|.++|.+.+.
T Consensus 5 kpvi~~~P~~~~v~~G~~vtL~C~~~~~ 32 (84)
T d1fnla1 5 KAVVFLEPQWYSVLEKDSVTLKCQGAYS 32 (84)
T ss_dssp CCEEEEESCCSEEETTCCEEEEEECCCB
T ss_pred CCEEEECCCCcEEeCCCeEEEEEEeccC
Confidence 366666632 34469999999999774
No 4
>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}
Probab=17.31 E-value=30 Score=21.54 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=19.0
Q ss_pred CceEEEEee--CCCCCcEEEEEEEeecC
Q psy7835 155 SPIIAVRFR--NPGVGTLINVECRAWAK 180 (205)
Q Consensus 155 sPLVAVqf~--n~~~n~~I~VeCkawAk 180 (205)
.|.|.++=. .+..++.|.+.|.+++.
T Consensus 4 kp~i~~~P~~~~v~~G~~v~L~C~~~~~ 31 (85)
T d2fcba1 4 KAVLKLEPQWINVLQEDSVTLTCRGTHS 31 (85)
T ss_dssp BCEEEEESCCSEEETTCEEEEEEECSSC
T ss_pred CCEEEECCCCeEEcCCCeEEEEEEEeec
Confidence 466766632 35579999999999874
No 5
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}
Probab=17.23 E-value=64 Score=21.46 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=17.3
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHH
Q psy7835 52 SWGGIFLFYVIFYSILACLFAICM 75 (205)
Q Consensus 52 sW~~I~lFYlifY~~La~lFa~~m 75 (205)
+|...++..++.|.++..+|++..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~fa~~y 46 (116)
T d1xl4a2 23 SWPVFITLITGLYLVTNALFALAY 46 (116)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777778887777776544
No 6
>d2oz4a1 b.1.1.3 (A:283-366) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.13 E-value=29 Score=23.47 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=16.7
Q ss_pred ceEEEEeeCCCCCcEEEEEEEeecC
Q psy7835 156 PIIAVRFRNPGVGTLINVECRAWAK 180 (205)
Q Consensus 156 PLVAVqf~n~~~n~~I~VeCkawAk 180 (205)
|..-+.=..++.++.|+|+|.+-+.
T Consensus 4 P~Ltlsep~v~eGt~VtVtC~a~~~ 28 (84)
T d2oz4a1 4 PNVILTKPEVSEGTEVTVKCEAHPR 28 (84)
T ss_dssp CEEEESCSEEETTCEEEEEEECCTT
T ss_pred CceEeccCcCCCCCEEEEEEecCCC
Confidence 3433333345679999999998653
No 7
>d1goia3 d.26.3.1 (A:292-379) Chitinase B {Serratia marcescens [TaxId: 615]}
Probab=16.28 E-value=24 Score=23.37 Aligned_cols=12 Identities=25% Similarity=0.459 Sum_probs=10.5
Q ss_pred eeeecCCCCcee
Q psy7835 35 LCIYNPQTGEVF 46 (205)
Q Consensus 35 ~fl~N~~t~~~l 46 (205)
-+|||+++++|+
T Consensus 75 pylyn~~~g~fi 86 (88)
T d1goia3 75 PYLYHAQNGLFV 86 (88)
T ss_dssp EEEEETTTTEEE
T ss_pred ceEEeCCCCeEe
Confidence 379999999986
No 8
>d1t82a_ d.38.1.5 (A:) Putative thioesterase SO4397 {Shewanella oneidensis [TaxId: 70863]}
Probab=15.18 E-value=1.1e+02 Score=20.77 Aligned_cols=19 Identities=21% Similarity=0.190 Sum_probs=11.9
Q ss_pred EeeCCCCCcEEEEEEEeecC
Q psy7835 161 RFRNPGVGTLINVECRAWAK 180 (205)
Q Consensus 161 qf~n~~~n~~I~VeCkawAk 180 (205)
+|.+|.. ..+.++|++...
T Consensus 88 ~ylrP~~-~~~~a~a~~~~~ 106 (143)
T d1t82a_ 88 RYLAPVT-SAPEVKVRWPDT 106 (143)
T ss_dssp EECSCCC-SCCEEEEECCSC
T ss_pred EEecccc-cCcEEEEEechh
Confidence 4555543 467788887654
No 9
>d1y88a2 c.52.1.30 (A:3-127) Hypothetical protein AF1548, N-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=15.07 E-value=54 Score=22.31 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=14.8
Q ss_pred CCcEEEEEEEeecCCCcc
Q psy7835 167 VGTLINVECRAWAKNIRY 184 (205)
Q Consensus 167 ~n~~I~VeCkawAkNI~~ 184 (205)
.+..+-||||-|++.+..
T Consensus 42 ~~~~~~VQcK~~~~~~~~ 59 (125)
T d1y88a2 42 DGERYMIECKFHNIPVYT 59 (125)
T ss_dssp TTEEEEEEECCCSSSCEE
T ss_pred CCcEEEEEEEEeccCCCC
Confidence 468899999999987654
No 10
>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.54 E-value=44 Score=21.17 Aligned_cols=17 Identities=18% Similarity=0.427 Sum_probs=13.8
Q ss_pred CCCCCcEEEEEEEeecC
Q psy7835 164 NPGVGTLINVECRAWAK 180 (205)
Q Consensus 164 n~~~n~~I~VeCkawAk 180 (205)
....|..+.++|+|.|.
T Consensus 13 ~v~~G~~v~l~C~v~g~ 29 (107)
T d1iray3 13 EVDLGSQIQLICNVTGQ 29 (107)
T ss_dssp ECCTTCCEEEEEEEEEC
T ss_pred EEeCCCEEEEEEEeccC
Confidence 35679999999999774
Done!