RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy7835
         (205 letters)



>gnl|CDD|162204 TIGR01107, Na_K_ATPase_bet, Sodium Potassium ATPase beta subunit.
           This model describes the Na+/K+ ATPase beta subunit in
          eukaryotes. Na+/K+ ATPase(also called Sodium-Potassium
          pump) is intimately associated with the plasma
          membrane. It couples the energy released by the
          hydrolysis of ATP to extrude 3 Na+ ions, with the
          concomitant uptake of 2K+ ions, against their ionic
          gradients [Transport and binding proteins, Cations and
          iron carrying compounds].
          Length = 289

 Score = 87.4 bits (217), Expect = 6e-21
 Identities = 26/59 (44%), Positives = 37/59 (62%)

Query: 32 NFKLCIYNPQTGEVFGRTPKSWGGIFLFYVIFYSILACLFAICMYVLMSTLTDEYPKLQ 90
           +K  I+NP+T E  GRT  SW  I LFY++FY  LA +F   + V++ T++D  PK Q
Sbjct: 15 EWKKFIWNPETKEFLGRTGGSWFKILLFYLVFYGCLAGIFIGTIQVMLQTISDFTPKYQ 73



 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 4/88 (4%)

Query: 116 VSCSGADPHDTETMGDVDYFP-QPGYPGYFYPYTNT---IGYLSPIIAVRFRNPGVGTLI 171
           V C+G    D E +G+V+Y+P   G+P  ++PY        YL P++AV+F N  + T +
Sbjct: 198 VDCTGKRDEDDENIGNVEYYPMNGGFPLQYFPYYGKKLQPNYLQPLVAVQFTNLTMNTEV 257

Query: 172 NVECRAWAKNIRYKKSGLNREGSVHFEL 199
            +EC+ + +NI Y        G V F++
Sbjct: 258 RIECKIYGENIAYSNEKDRFLGRVDFKI 285


>gnl|CDD|215838 pfam00287, Na_K-ATPase, Sodium / potassium ATPase beta chain. 
          Length = 289

 Score = 85.5 bits (212), Expect = 4e-20
 Identities = 29/68 (42%), Positives = 42/68 (61%)

Query: 23 KDLGNTKWQNFKLCIYNPQTGEVFGRTPKSWGGIFLFYVIFYSILACLFAICMYVLMSTL 82
          K   +   + +K  ++NP+TGE  GRT  SW  I LFYV+FY  LA +F + ++V++ TL
Sbjct: 7  KKSCSQSMEEWKKFVWNPETGEFLGRTGSSWAKILLFYVVFYGFLAGIFTLTIWVMLQTL 66

Query: 83 TDEYPKLQ 90
           D  PK Q
Sbjct: 67 DDYTPKYQ 74



 Score = 79.0 bits (195), Expect = 1e-17
 Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 7/108 (6%)

Query: 95  IIGVNPVTRKGNLTGNWRTIWVSCSGADPHDTETMGDVDYFPQ-PGYPGYFYPYTNT--- 150
           IIG  P   K   +       + C+G    D + +G+++YFP   G+   +YPY      
Sbjct: 185 IIGFKPEPPKNYNSTA---PPIHCTGKRAEDKDRIGNIEYFPMGGGFDLMYYPYYGKKLQ 241

Query: 151 IGYLSPIIAVRFRNPGVGTLINVECRAWAKNIRYKKSGLNREGSVHFE 198
             YL P++AV+F N      + VEC+ +A+NI+         G V F+
Sbjct: 242 PNYLQPLVAVKFTNLTRNVEVRVECKIYAENIKNDDPRDRFLGRVEFK 289


>gnl|CDD|163267 TIGR03441, urea_trans_yut, urea transporter, Yersinia type.
           Members of this protein family are bacterial urea
           transporters, found not only is species that contain
           urease, but adjacent to the urease operon. It was
           characterized in Yersinia pseudotuberculosis. Members
           are homologous to eukaryotic members of solute carrier
           family 14, a family that includes urea transporters, and
           to bacterial proteins in species with no detectable urea
           degradation system [Transport and binding proteins,
           Other].
          Length = 292

 Score = 27.3 bits (61), Expect = 5.8
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 53  WGGIFLFYVIFYSILACLFAICMYVLMSTLTD---EYPKLQLDESIIGVNPV 101
             G+F    +F    A      + VL++TLT     Y K  +   + G N V
Sbjct: 21  LTGLFFLIALFIGNWAVGIGALIGVLVATLTARLLNYDKKSIRSGLYGFNGV 72


>gnl|CDD|222414 pfam13845, Septum_form, Septum formation.  This domain is found in
           a protein which is predicted to play a role in septum
           formation during cell division.
          Length = 99

 Score = 26.2 bits (58), Expect = 6.3
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)

Query: 116 VSCSGADPHDTETMGDVDYFPQPGYPG 142
           V C+   PHD E +G VD      +PG
Sbjct: 24  VPCAE--PHDAEVVGVVDLPDGFDFPG 48


>gnl|CDD|144478 pfam00897, Orbi_VP7, Orbivirus inner capsid protein VP7.  In BTV,
           260 trimers of VP7 are found in the core. The major
           proteins of the core are VP7 and VP3. VP7 forms an outer
           layer around VP3.
          Length = 350

 Score = 27.0 bits (60), Expect = 7.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 73  ICMYVLMSTLTDEYPKLQLDESIIGVNPVTRKGN 106
           I    L+S L D Y  L+ D  + GV P+   GN
Sbjct: 308 ILALALLSRLADVYSALRPDFRLRGVQPLRGPGN 341


>gnl|CDD|148567 pfam07019, Rab5ip, Rab5-interacting protein (Rab5ip).  This
          family consists of several Rab5-interacting protein
          (RIP5 or Rab5ip) sequences. The ras-related GTPase rab5
          is rate-limiting for homotypic early endosome fusion.
          Rab5ip represents a novel rab5 interacting protein that
          may function on endocytic vesicles as a receptor for
          rab5-GDP and participate in the activation of rab5.
          Length = 81

 Score = 25.2 bits (56), Expect = 8.2
 Identities = 4/19 (21%), Positives = 9/19 (47%)

Query: 57 FLFYVIFYSILACLFAICM 75
          F+FY +     + L+   +
Sbjct: 29 FIFYFLISLGTSYLYYAKV 47


>gnl|CDD|217455 pfam03253, UT, Urea transporter.  Members of this family transport
           urea across membranes. The family includes a bacterial
           homologue, Actinobacillus pleuropneumoniae urea
           transport protein Utp.
          Length = 298

 Score = 26.8 bits (60), Expect = 8.2
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 45  VFGRTPKSWGGIFLFYVIFYSILACLFAICMYVLMSTLTD---EYPKLQLDESIIGVNPV 101
           +F   P S  G+ +   +F           +  L+STLT     Y +  +   + G N V
Sbjct: 13  MFQNNPLS--GLLILLALFVQSPWLALLALLGTLVSTLTALLLGYDRADIAAGLYGFNGV 70


>gnl|CDD|180937 PRK07337, PRK07337, aminotransferase; Validated.
          Length = 388

 Score = 26.9 bits (60), Expect = 8.5
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 89  LQLDESIIGVNPVTRKGNLTGNWRTIW 115
           L L + +I +N  ++  N+TG WR  W
Sbjct: 218 LSLGDDVITINSFSKYFNMTG-WRLGW 243


>gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter
           transporters; solute-binding domain.  This family
           represents the solute-binding domain of SLC6 proteins
           (also called the sodium- and chloride-dependent
           neurotransmitter transporter family or Na+/Cl--dependent
           transporter family). These use sodium and chloride
           electrochemical gradients to catalyze the
           thermodynamically uphill movement of a variety of
           substrates, and include neurotransmitter transporters
           (NTTs). The latter are Na+/Cl--dependent plasma membrane
           transporters for the monoamine neurotransmitters
           serotonin (5-hydroxytryptamine), dopamine, and
           norepinephrine, and the amino acid neurotransmitters
           GABA and glycine. NTTs are widely expressed in the
           mammalian brain, and are involved in regulating
           neurotransmitter signaling and homeostasis, through
           facilitating the uptake of released neurotransmitters
           from the extracellular space into neurons and glial
           cells. NTTs are the target of a range of therapeutic
           drugs for the treatment of psychiatric diseases, such as
           major depression, anxiety disorders, attention deficit
           hyperactivity disorder and epilepsy. In addition, they
           are the primary targets of cocaine, amphetamines and
           other psychostimulants. This family also includes
           Drosophila Blot which is expressed primarily in
           epithelial tissues of ectodermal origin and in the
           nervous system of the embryo and larvae, but in addition
           found in the developing oocyte and the freshly laid egg.
           A lack or reduction of Blot function during oogenesis
           results in early arrest of embryonic development. 12
           transmembrane helices (TMs) appears to be common for
           eukaryotic and some prokaryotic and archaeal SLC6s, (a
           core inverted topology repeat, TM1-5 and TM6-10, plus
           TMs11-12; TMs numbered to conform to the SLC6 Aquifex
           aeolicus LeuT), although a majority of bacterial, and
           some archaeal SLC6s lack TM12, for example the
           functional Fusobacterium nucleatum tyrosine transporter
           Tyt1.
          Length = 417

 Score = 26.7 bits (60), Expect = 9.5
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 10/51 (19%)

Query: 44  EVFGRTPKSWGGIFLFYVIFYSILACL-----FAICMYVLMSTLTDEYPKL 89
           E   + P       L+ V+F+ +L  L     FAI +  +++ + DE+PKL
Sbjct: 273 EAIAKMPVPQ----LWSVLFFFMLFLLGLDSQFAI-VETIVTAIVDEFPKL 318


>gnl|CDD|143404 cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase
          and ALDH family members 6A1 and 6B2.  Methylmalonate
          semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27)
          [acylating] from Bacillus subtilis is involved in
          valine metabolism and catalyses the NAD+- and
          CoA-dependent oxidation of methylmalonate semialdehyde
          into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1
          and Arabidopsis MMSDH ALDH6B2 are also present in this
          CD.
          Length = 478

 Score = 26.7 bits (60), Expect = 9.8
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 4/26 (15%)

Query: 27 NTKWQNFKLCIYNPQTGEVFGRTPKS 52
           T+W +    +YNP TGEV  R P +
Sbjct: 14 TTEWLD----VYNPATGEVIARVPLA 35


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.140    0.465 

Gapped
Lambda     K      H
   0.267   0.0679    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,808,207
Number of extensions: 994447
Number of successful extensions: 1117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1113
Number of HSP's successfully gapped: 29
Length of query: 205
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 113
Effective length of database: 6,857,034
Effective search space: 774844842
Effective search space used: 774844842
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)