RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7835
(205 letters)
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+,
K+-ATPase, P-type ATPase, membrane protein, hydrolase,
aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB:
2xzb_B
Length = 290
Score = 112 bits (280), Expect = 3e-30
Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
Query: 104 KGNLTGNWR-----TIWVSCSGADPHDTETMGDVDYFPQPG-YPGYFYPYTNTI---GYL 154
K N + V C+ D V+YFP G Y +++PY Y
Sbjct: 182 KMNRIVKFLPGNSTAPRVDCAFLDQPRDGPPLQVEYFPANGTYSLHYFPYYGKKAQPHYS 241
Query: 155 SPIIAVRFRNPGVGTLINVECRAWAKNIRYKKSGLNREGSVHFELLLE 202
+P++A + N + + C+ A+++ + EG V F+L ++
Sbjct: 242 NPLVAAKLLNVPRNRDVVIVCKILAEHVSFDNPHDPYEGKVEFKLKIQ 289
Score = 85.9 bits (212), Expect = 2e-20
Identities = 28/76 (36%), Positives = 43/76 (56%)
Query: 23 KDLGNTKWQNFKLCIYNPQTGEVFGRTPKSWGGIFLFYVIFYSILACLFAICMYVLMSTL 82
K + + + F+ +NP TG++ GRT W I L+YV FY +++ +FA+C+YVLM T+
Sbjct: 7 KKSCSQRMEEFQRYCWNPDTGQMLGRTLSRWVWISLYYVAFYVVMSGIFALCIYVLMRTI 66
Query: 83 TDEYPKLQLDESIIGV 98
P Q GV
Sbjct: 67 DPYTPDYQDQLKSPGV 82
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical,
heterotrimeric membrane protein complex, ATP- hydrolase,
ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa}
PDB: 3n2f_B* 3n23_B*
Length = 286
Score = 107 bits (267), Expect = 2e-28
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Query: 113 TIWVSCSGADPHDTETMGDVDYFPQPGYPGY---FYPYTNTI---GYLSPIIAVRFRNPG 166
+ V C+G D E +G ++YF GYPG+ +YPY + YL P++AV+F N
Sbjct: 191 VLPVHCTGKRDEDKEKVGTMEYFGLGGYPGFPLQYYPYYGKLLQPKYLQPLMAVQFTNLT 250
Query: 167 VGTLINVECRAWAKNIRYKKSGLNREGSVHFELLLE 202
+ T I +EC+A+ +NI Y + +G ++ ++
Sbjct: 251 MDTEIRIECKAYGENIGYSEK-DRFQGRFDVKIEVK 285
Score = 77.5 bits (190), Expect = 2e-17
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 39 NPQTGEVFGRTPKSWGGIFLFYVIFYSILACLFAICMYVLMSTLTDEYPKLQLDESIIGV 98
N + E GRT SW I LFYVIFY LA +F + V++ T+++ P Q + G+
Sbjct: 1 NSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQDRVAPPGL 60
Query: 99 NPVTR 103
+ +
Sbjct: 61 TQIPQ 65
>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_B* 3b8e_B*
Length = 305
Score = 101 bits (253), Expect = 2e-26
Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 14/135 (10%)
Query: 74 CMYVLMSTLTDEYPKLQLDESIIGVNPVTRKGNLTGNWRTIWVSCSGADPHDTETMGDVD 133
C+ ++ + YPK + + + P + N + + C+ D E +G ++
Sbjct: 176 CVVAKLNRIIGFYPKPLKNTTDL---PEELQANYNQY--VLPLRCAAKREEDREKIGSIE 230
Query: 134 YFPQ---PGYPGYFYPYTN---TIGYLSPIIAVRFRNPGVGTLINVECRAWAKNIRYKKS 187
YF G+P +YPY YL P++A++F N + +EC+ + +NI Y +
Sbjct: 231 YFGLGGYAGFPLQYYPYYGKRLQKKYLQPLLAIQFTNLTQNMELRIECKVYGENIDYSEK 290
Query: 188 GLNREGSVHFELLLE 202
FE+ +E
Sbjct: 291 ---DRFRGRFEVKIE 302
Score = 84.0 bits (207), Expect = 1e-19
Identities = 27/70 (38%), Positives = 39/70 (55%)
Query: 29 KWQNFKLCIYNPQTGEVFGRTPKSWGGIFLFYVIFYSILACLFAICMYVLMSTLTDEYPK 88
+K +++ + E GRT SW IFLFY+IFY LA +F + VL+ TL+D PK
Sbjct: 9 TDGGWKKFLWDSEKKEFLGRTGSSWFKIFLFYLIFYGCLAGIFIGTIQVLLLTLSDFEPK 68
Query: 89 LQLDESIIGV 98
Q + G+
Sbjct: 69 YQDRVAPPGL 78
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.023
Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 29/124 (23%)
Query: 74 CMYV---LMSTLTDEYPKLQLDESIIGVNPVTRKGNLTGNWRTIWVSCSGADPHDTETMG 130
C V S L+ E ++D I+ + V+ R W S + + +
Sbjct: 35 CKDVQDMPKSILSKE----EIDHIIMSKDAVSG------TLRLFWTLLSKQEEMVQKFVE 84
Query: 131 DVDYFPQPGYPGYFYPYTNTIGYLSPIIAVRFRNPGVGTLINVECR--AWAKNIRYKKSG 188
+V + Y +L I R P + T + +E R + N + K
Sbjct: 85 EVL---RINYK-----------FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 189 LNRE 192
++R
Sbjct: 131 VSRL 134
Score = 32.1 bits (72), Expect = 0.13
Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 30/78 (38%)
Query: 131 DVDYFPQPGYPGYFYPYTNTIGY------------LSPIIAVRFRNPGVGTLINVECRAW 178
D D P YFY + IG+ L ++ + FR +
Sbjct: 460 DSDDLIPPYLDQYFYSH---IGHHLKNIEHPERMTLFRMVFLDFR--------------F 502
Query: 179 AKN-IRYKKSGLNREGSV 195
+ IR+ + N GS+
Sbjct: 503 LEQKIRHDSTAWNASGSI 520
>1xl4_A Inward rectifier potassium channel; integral membrane protein,
ION channel, inwardly rectifying channel, metal
transport; 2.60A {Magnetospirillum magnetotacticum}
SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B
2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A
2x6c_A* 2x6b_A* 2x6a_A*
Length = 301
Score = 27.0 bits (59), Expect = 4.4
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 52 SWGGIFLFYVIFYSILACLFAICMYVLMSTLTDEYP 87
SW Y + LFA+ + + P
Sbjct: 45 SWPVFITLITGLYLVTNALFALAYLACGDVIENARP 80
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 5.8
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 14/49 (28%)
Query: 51 KSWGGIFLFYVIFYSILACLFAI---CMYVLMSTLTDEYPKLQLDESII 96
SW F+V + LF I C + YP L SI+
Sbjct: 287 DSWES---FFVSVRKAITVLFFIGVRC--------YEAYPNTSLPPSIL 324
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex,
oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB:
2ilu_A* 2hg2_A* 2opx_A*
Length = 479
Score = 26.7 bits (60), Expect = 6.0
Identities = 4/13 (30%), Positives = 7/13 (53%)
Query: 184 YKKSGLNREGSVH 196
++KSG+ H
Sbjct: 452 WRKSGIGGADGKH 464
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase;
oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus
subtilis}
Length = 486
Score = 26.8 bits (60), Expect = 6.4
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 37 IYNPQTGEVFGRTPKS 52
+ NP T EV + P S
Sbjct: 25 VVNPATKEVLCQVPIS 40
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics,
protein structure INI nysgrc, PSI-biology; 2.90A
{Sinorhizobium meliloti}
Length = 521
Score = 26.4 bits (59), Expect = 6.7
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 37 IYNPQTGEVFGRTPKS 52
I+NP TGEV G +
Sbjct: 46 IFNPATGEVQGTVALA 61
>3rlk_A A1 protein; beta-barrel, polyproline helix, structural protein;
HET: PG4; 1.76A {Enterobacteria phage qbeta} PDB:
3rlc_A*
Length = 192
Score = 25.9 bits (56), Expect = 7.7
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 2 SSSKNVANNGPPRGYEWEYARKD-LGNTKWQNF 33
+ + N + E++ A KD LGNTKW+++
Sbjct: 47 NRPWPIYNAVELQPREFDVALKDLLGNTKWRDW 79
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein,
flavoprotein, FAD, mitochondrion, plastid, chromophore,
chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana}
PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Length = 525
Score = 26.1 bits (58), Expect = 9.9
Identities = 6/15 (40%), Positives = 8/15 (53%), Gaps = 2/15 (13%)
Query: 109 GNWRTIWVSCSGADP 123
GNW + + G DP
Sbjct: 430 GNWT--YGAGVGNDP 442
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.140 0.465
Gapped
Lambda K H
0.267 0.0537 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,353,891
Number of extensions: 191448
Number of successful extensions: 461
Number of sequences better than 10.0: 1
Number of HSP's gapped: 454
Number of HSP's successfully gapped: 30
Length of query: 205
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 116
Effective length of database: 4,216,824
Effective search space: 489151584
Effective search space used: 489151584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)