RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7835
         (205 letters)



>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel
          Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
          Length = 116

 Score = 25.7 bits (56), Expect = 2.1
 Identities = 7/36 (19%), Positives = 15/36 (41%)

Query: 52 SWGGIFLFYVIFYSILACLFAICMYVLMSTLTDEYP 87
          SW   F      + +   LFA+   +  + + ++ P
Sbjct: 24 SWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSP 59


>d1bvp11 a.115.1.1 (1:1-120,1:255-349) BTV vp7 {Bluetongue virus
           [TaxId: 40051]}
          Length = 215

 Score = 25.2 bits (55), Expect = 6.2
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 73  ICMYVLMSTLTDEYPKLQLDESIIGVNPV 101
           I   +L+STL D Y  L+ + +I GVNP+
Sbjct: 173 ILTLLLLSTLADVYTVLRPEFAIHGVNPM 201


>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 439

 Score = 25.2 bits (55), Expect = 6.7
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 139 GYPGYFYPYTNTIGYLSPIIAVRF 162
            + G + PY   +     I +V F
Sbjct: 266 AWHGNYTPYKYNLKNFMVINSVAF 289


>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia
           trachomatis [TaxId: 813]}
          Length = 317

 Score = 24.7 bits (53), Expect = 8.7
 Identities = 11/71 (15%), Positives = 24/71 (33%)

Query: 55  GIFLFYVIFYSILACLFAICMYVLMSTLTDEYPKLQLDESIIGVNPVTRKGNLTGNWRTI 114
            I +  + FYS    + +      M  + ++Y  +  DE+I     +     +      I
Sbjct: 188 YIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEI 247

Query: 115 WVSCSGADPHD 125
           W      +  +
Sbjct: 248 WTPELQQEIVE 258


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.140    0.465 

Gapped
Lambda     K      H
   0.267   0.0566    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 855,648
Number of extensions: 39971
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 8
Length of query: 205
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 124
Effective length of database: 1,295,466
Effective search space: 160637784
Effective search space used: 160637784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.8 bits)