BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7836
(189 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 209 bits (533), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 97/136 (71%), Positives = 108/136 (79%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQXXXXXXXXXX 63
VLLKT+ GDIDIELWS+EAPKACRNF+QLC+E YY+NTI HRVV GFI Q
Sbjct: 27 VLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGSG 86
Query: 64 XESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA 123
ESIYG PFKDE HSRLRF RRGLVAMANAG DNGSQFFFTL ELN+KHTIFGKV
Sbjct: 87 GESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT 146
Query: 124 GDTIYNMIKLDEIMVD 139
GDT+YNM++L E+ +D
Sbjct: 147 GDTVYNMLRLSEVDID 162
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 143 bits (360), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 74/151 (49%), Positives = 94/151 (62%), Gaps = 16/151 (10%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQ--XXXXXXXX 61
V+L TS+GD+D+ELW+RE P ACRNFVQLC+EGYY NTI HRVVK FI Q
Sbjct: 24 VVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTGRG 83
Query: 62 XXXESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDD--------------NGSQFFFTLA 107
+ GKPF E H RL+F RGLV +AN G+ NG+QFF TLA
Sbjct: 84 GADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLA 143
Query: 108 ATPELNSKHTIFGKVAGDTIYNMIKLDEIMV 138
LN+ +T+FGKV G T+YN++K +++ V
Sbjct: 144 RADVLNNAYTLFGKVTGHTLYNLMKFNDLEV 174
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/119 (52%), Positives = 79/119 (66%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQXXXXXXXXXX 63
V L+TS+G I +EL+ + APK C+NF +L GYYN T HR++K F+ Q
Sbjct: 14 VYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRG 73
Query: 64 XESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
SIYGK F+DE+H L+F G++AMANAG D NGSQFF TLA T L+ KHTIFG+V
Sbjct: 74 GASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRV 132
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/119 (52%), Positives = 79/119 (66%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQXXXXXXXXXX 63
V L+TS+G I +EL+ + APK C+NF +L GYYN T HR++K F+ Q
Sbjct: 14 VYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRG 73
Query: 64 XESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
SIYGK F+DE+H L+F G++AMANAG D NGSQFF TLA T L+ KHTIFG+V
Sbjct: 74 GASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRV 132
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/119 (52%), Positives = 79/119 (66%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQXXXXXXXXXX 63
V L+TS+G I +EL+ + APK C+NF +L GYYN T HR++K F+ Q
Sbjct: 14 VYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRG 73
Query: 64 XESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
SIYGK F+DE+H L+F G++AMANAG D NGSQFF TLA T L+ KHTIFG+V
Sbjct: 74 GASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRV 132
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 1 MQAVLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQXXXXXXX 60
Q V + T+ GD+ EL+ + PKAC+NF+ L GYY NTI H+ +KGFI Q
Sbjct: 16 FQGVRIITNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTGT 75
Query: 61 XXXXESIYGKPFKDEIHSRLRFVRRGLVAMANAG----KDDNGSQFFFTLAATPELNSKH 116
ESIYG+ F DEI+ L++ RRG+++MA+ G + NGSQFF T ++ P+LN ++
Sbjct: 76 GKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEY 135
Query: 117 TIFGKV 122
IFGK+
Sbjct: 136 VIFGKL 141
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 81/137 (59%), Gaps = 1/137 (0%)
Query: 3 AVLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQXXXXXXXXX 62
+V L T VGDI IE++ PK C NF+ LC YYN I HR +KGF+ Q
Sbjct: 8 SVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGR 67
Query: 63 XXESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
SI+GK F+DE L+ RG+V+MAN G + NGSQFF T P L+ K+T+FGKV
Sbjct: 68 GGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKV 127
Query: 123 AGDTIYNMIKLDEIMVD 139
D + + +L+++ V+
Sbjct: 128 I-DGLETLDELEKLPVN 143
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 81/137 (59%), Gaps = 1/137 (0%)
Query: 3 AVLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQXXXXXXXXX 62
+V L T VGDI IE++ PK C NF+ LC YYN I HR +KGF+ Q
Sbjct: 2 SVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGR 61
Query: 63 XXESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
SI+GK F+DE L+ RG+V+MAN G + NGSQFF T P L+ K+T+FGKV
Sbjct: 62 GGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKV 121
Query: 123 AGDTIYNMIKLDEIMVD 139
D + + +L+++ V+
Sbjct: 122 I-DGLETLDELEKLPVN 137
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 114 bits (285), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 76/120 (63%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQXXXXXXXXXX 63
+ + T++GD ++EL+ +PK C NF LC G+Y+NTI HRV+ F+ Q
Sbjct: 41 ITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKG 100
Query: 64 XESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA 123
+SIYG+ F+DEI+ L+ G+++M+N G + N SQFF TLA P L+ KHTIF +V+
Sbjct: 101 GKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVS 160
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 114 bits (284), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 73/121 (60%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQXXXXXXXXXX 63
V L T+ GD+++EL PK C NF++LC + YY+ TI HR ++ F+ Q
Sbjct: 22 VRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTG 81
Query: 64 XESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA 123
ES +GKPFKDE L RG+++MAN+G + N SQFF T + L+ KHTIFG+V
Sbjct: 82 GESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVV 141
Query: 124 G 124
G
Sbjct: 142 G 142
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 113 bits (283), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 73/121 (60%)
Query: 3 AVLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQXXXXXXXXX 62
+ ++ TS+GDI +L+ E PK NF GYYN HR++KGF+ Q
Sbjct: 23 SAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGM 82
Query: 63 XXESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
ESI+G F+DE HS LR R ++MANAG + NGSQFF T+ TP L++KHT+FG+V
Sbjct: 83 GGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRV 142
Query: 123 A 123
Sbjct: 143 T 143
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 85/152 (55%), Gaps = 3/152 (1%)
Query: 2 QAVLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQXXXXXXXX 61
++ ++ T++GDI I L+ +E K +NF + GYYNN I HRV+K F+ Q
Sbjct: 6 KSAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDG 65
Query: 62 XXXESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGK 121
ESI+G F+DE L + +V+MAN G + NGSQFF T P L+ KHT+FGK
Sbjct: 66 TGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGK 125
Query: 122 VA-GDTIYNMIKLDEIMVDHVSTYLEYRKRIN 152
V G I ++ ++++ D LE K +N
Sbjct: 126 VTQGSKI--VLDIEKVRTDKRDKPLEDIKILN 155
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 90.1 bits (222), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 72/129 (55%), Gaps = 12/129 (9%)
Query: 8 TSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGF--------IAQXXXXXX 59
T+ G ++IEL + AP+AC +F++LC Y+++TI HR ++ F + Q
Sbjct: 13 TTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAELRQPSKKKE 72
Query: 60 XXXXXESIYG----KPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSK 115
SI G PF+DE +RL G+++MAN GK N S+FF T + LN+K
Sbjct: 73 VQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNK 132
Query: 116 HTIFGKVAG 124
HTIFG+V G
Sbjct: 133 HTIFGRVVG 141
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 90.1 bits (222), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 78/136 (57%), Gaps = 7/136 (5%)
Query: 7 KTSVGDIDIELWSREAPKACRNFVQLCM----EGYYNNTIIHRVVKGFIAQXXX-XXXXX 61
+T VG I L+ ++ PK +NF +LC EGY +T HR++ F+ Q
Sbjct: 18 ETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTF-HRIIPNFMIQGGDFTRGNG 76
Query: 62 XXXESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGK 121
SIYG F DE SR + ++G+++MANAG + NGSQFF T A T L+ KH +FG+
Sbjct: 77 TGGRSIYGDKFADENFSR-KHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGE 135
Query: 122 VAGDTIYNMIKLDEIM 137
VA + Y+++K E +
Sbjct: 136 VADEKSYSVVKEIEAL 151
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 65/132 (49%), Gaps = 18/132 (13%)
Query: 6 LKTSVGDIDIELWSREAPKACRNFVQLCME---------------GYYNNTIIHRVVKGF 50
L T+ GDI I L+ APK NFV L +Y+ + HRV++GF
Sbjct: 28 LHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGF 87
Query: 51 IAQXXXXXXXXXXXESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATP 110
+ Q F DE H L+F + L+AMANAG NGSQFF T+ TP
Sbjct: 88 MIQGGDPTGTGRGGPGYK---FADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTP 144
Query: 111 ELNSKHTIFGKV 122
LN +HTIFG+V
Sbjct: 145 HLNRRHTIFGEV 156
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 69/118 (58%), Gaps = 6/118 (5%)
Query: 9 SVGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXXXXX-XXXXX 64
+G I I L+ ++AP NF QLC G+ Y ++I HRV++ F+ Q
Sbjct: 24 PLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGG 83
Query: 65 ESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
+SIYG+ F DE + FV G ++MANAG + NGSQFF T A TP L+ +H +FGKV
Sbjct: 84 KSIYGEKFADENLNVKHFV--GALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKV 139
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 67/125 (53%), Gaps = 11/125 (8%)
Query: 8 TSVGDIDIELWSREAPKACRNFVQLCMEG---------YYNNTIIHRVVKGFIAQXXX-X 57
++ G I EL+S P+ C NF LC +Y N+I HR++ F+ Q
Sbjct: 15 SNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDIT 74
Query: 58 XXXXXXXESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHT 117
ESIYG+ F DE + ++ + GL++MANAG + N SQFF TL P L+ KH
Sbjct: 75 NGNGSGGESIYGRSFTDE-NFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHV 133
Query: 118 IFGKV 122
+FGKV
Sbjct: 134 VFGKV 138
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 68/118 (57%), Gaps = 6/118 (5%)
Query: 9 SVGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXXXXX-XXXXX 64
+G I I L+ ++AP NF QLC G+ Y ++I HRV++ F+ Q
Sbjct: 24 PLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGG 83
Query: 65 ESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
+SIYG+ F DE + FV G ++MANAG + NGSQFF T A TP L+ H +FGKV
Sbjct: 84 KSIYGEKFADENLNVKHFV--GALSMANAGPNTNGSQFFITTAPTPWLDGAHVVFGKV 139
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 66/125 (52%), Gaps = 11/125 (8%)
Query: 8 TSVGDIDIELWSREAPKACRNFVQLCMEG---------YYNNTIIHRVVKGFIAQXXX-X 57
++ G I EL+S P+ C NF LC +Y N+I HR++ F+ Q
Sbjct: 15 SNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDIT 74
Query: 58 XXXXXXXESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHT 117
ESIYG+ F DE + ++ + GL++MANAG + N SQF TL P L+ KH
Sbjct: 75 NGNGSGGESIYGRSFTDE-NFNMKHDQPGLLSMANAGPNTNSSQFLITLVPCPWLDGKHV 133
Query: 118 IFGKV 122
+FGKV
Sbjct: 134 VFGKV 138
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 71/129 (55%), Gaps = 6/129 (4%)
Query: 10 VGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXXXXXXXXXXE- 65
VG I I L+ PK NFV L +GY Y +I HRV+K F+ Q
Sbjct: 21 VGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGM 80
Query: 66 SIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA-G 124
SIYG+ F DE + +L+ G V+MANAG D NGSQFF TL L+ KH +FGKV G
Sbjct: 81 SIYGETFPDE-NFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDG 139
Query: 125 DTIYNMIKL 133
T+ + I+L
Sbjct: 140 MTVVHSIEL 148
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 71/129 (55%), Gaps = 6/129 (4%)
Query: 10 VGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXXXXXXXXXXE- 65
VG I I L+ + PK NFV L +GY Y + HRV+K F+ Q
Sbjct: 29 VGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFMIQGGDITTGDGTGGV 88
Query: 66 SIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA-G 124
SIYG+ F DE + +L+ G V+MANAG D NGSQFF TL L+ KH +FGKV G
Sbjct: 89 SIYGETFPDE-NFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVIDG 147
Query: 125 DTIYNMIKL 133
T+ + I+L
Sbjct: 148 MTVVHSIEL 156
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 9 SVGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXXXXX-XXXXX 64
VG + I L+ + PK NF QL G+ Y +I HRV++ F+ Q
Sbjct: 18 PVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGG 77
Query: 65 ESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
+SIYG F DE FV G V+MANAG + NGSQFF T A TP L+ +H +FGKV
Sbjct: 78 KSIYGTRFDDENLKIKHFV--GAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKV 133
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 66/117 (56%), Gaps = 5/117 (4%)
Query: 10 VGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXX-XXXXXXXXE 65
VG + L+ + PK NFV L +G+ Y N+ HRV+K F+ Q +
Sbjct: 19 VGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGK 78
Query: 66 SIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
SIYG+ F DE + +L+ G V+MANAGKD NGSQFF T T L+ KH +FGKV
Sbjct: 79 SIYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKV 134
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 66/117 (56%), Gaps = 5/117 (4%)
Query: 10 VGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXX-XXXXXXXXE 65
VG + L+ + PK NFV L +G+ Y N+ HRV+K F+ Q +
Sbjct: 29 VGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGK 88
Query: 66 SIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
SIYG+ F DE + +L+ G V+MANAGKD NGSQFF T T L+ KH +FGKV
Sbjct: 89 SIYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKV 144
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 67/118 (56%), Gaps = 5/118 (4%)
Query: 9 SVGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXX-XXXXXXXX 64
+G + I L+ + PK NFV L +G+ Y ++ HRV+K F+ Q
Sbjct: 25 DIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGG 84
Query: 65 ESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
+SIYG+ F DE + +L+ G V+MANAGKD NGSQFF T T L+ KH +FGKV
Sbjct: 85 KSIYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKV 141
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 67/118 (56%), Gaps = 5/118 (4%)
Query: 9 SVGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXX-XXXXXXXX 64
+G + I L+ + PK NFV L +G+ Y ++ HRV+K F+ Q
Sbjct: 25 DIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGG 84
Query: 65 ESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
+SIYG+ F DE + +L+ G V+MANAGKD NGSQFF T T L+ KH +FGKV
Sbjct: 85 KSIYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKV 141
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 67/127 (52%), Gaps = 13/127 (10%)
Query: 9 SVGDIDIELWSREAPKACRNFVQLCM----EG------YYNNTIIHRVVKGFIAQXXX-X 57
+ G I +EL++ PK NF LC +G +Y +++ HRV+ F+ Q
Sbjct: 20 AAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHRVIPNFMIQGGDFT 79
Query: 58 XXXXXXXESIYGKPFKDEIHSRL--RFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSK 115
ESIYG F+DE S R G ++MANAG + NGSQFF AATP L+ K
Sbjct: 80 RGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQFFICTAATPWLDGK 139
Query: 116 HTIFGKV 122
H +FG+V
Sbjct: 140 HVVFGRV 146
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 66/126 (52%), Gaps = 13/126 (10%)
Query: 9 SVGDIDIELWSREAPKACRNFVQLCM--EG---------YYNNTIIHRVVKGFIAQXXX- 56
G + EL+S PK C NF LC +G +Y + + HRVVK F+ Q
Sbjct: 22 PAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDF 81
Query: 57 XXXXXXXXESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKH 116
ESIYG F+DE + ++ + L++MAN GKD NGSQFF T TP L+ H
Sbjct: 82 SEGNGRGGESIYGGFFEDESFA-VKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHH 140
Query: 117 TIFGKV 122
+FG+V
Sbjct: 141 VVFGQV 146
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 66/126 (52%), Gaps = 13/126 (10%)
Query: 9 SVGDIDIELWSREAPKACRNFVQLCM--EG---------YYNNTIIHRVVKGFIAQXXX- 56
G + EL+S PK C NF LC +G +Y + + HRVVK F+ Q
Sbjct: 22 PAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRVVKDFMVQGGDF 81
Query: 57 XXXXXXXXESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKH 116
ESIYG F+DE + ++ + L++MAN GKD NGSQFF T TP L+ H
Sbjct: 82 SEGNGRGGESIYGGFFEDESFA-VKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHH 140
Query: 117 TIFGKV 122
+FG+V
Sbjct: 141 VVFGQV 146
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 65/128 (50%), Gaps = 21/128 (16%)
Query: 11 GDIDIELWSREAPKACRNFVQLC--MEG---------YYNNTIIHRVVKGFIAQXXX-XX 58
G I +EL++ AP+ C NF+ LC M G +Y + HRV+K F+ Q
Sbjct: 21 GRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTK 80
Query: 59 XXXXXXESIYGKPFKDEIHSRLRFVRRG----LVAMANAGKDDNGSQFFFTLAATPELNS 114
ESIYG F DE FV + +V+MAN G + NGSQFF T P LN+
Sbjct: 81 GDGTGGESIYGGMFDDE-----EFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNN 135
Query: 115 KHTIFGKV 122
H +FGKV
Sbjct: 136 IHVVFGKV 143
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 65/119 (54%), Gaps = 7/119 (5%)
Query: 9 SVGDIDIELWSREAPKACRNFVQLCM----EGYYNNTIIHRVVKGFIAQXXX-XXXXXXX 63
S+G I ++L PK +NF LC EGY +T HR++ GF+ Q
Sbjct: 40 SLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTF-HRIIPGFMVQGGDYTAHNGTG 98
Query: 64 XESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
SIYG+ F DE + L+ + G+++MAN G NGSQFF TL T L+ KH +FG+V
Sbjct: 99 GRSIYGEKFPDE-NFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEV 156
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 67/125 (53%), Gaps = 13/125 (10%)
Query: 10 VGDIDIELWSREAPKACRNFVQLCM--EG---------YYNNTIIHRVVKGFIAQXXX-X 57
VG I +EL++ PK NF LC +G ++ HR++K F+ Q
Sbjct: 29 VGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFS 88
Query: 58 XXXXXXXESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHT 117
ESIYG+ F+DE + + + GL++MANAG + NGSQFF T TP L+ KH
Sbjct: 89 NQNGTGGESIYGEKFEDE-NFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHV 147
Query: 118 IFGKV 122
+FG+V
Sbjct: 148 VFGQV 152
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 64/119 (53%), Gaps = 7/119 (5%)
Query: 9 SVGDIDIELWSREAPKACRNFVQLCM----EGYYNNTIIHRVVKGFIAQXXX-XXXXXXX 63
+G I I L+ + PK NF++L EGY + HRV+ F+ Q
Sbjct: 19 PIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKF-HRVIADFMIQGGDFTRGDGTG 77
Query: 64 XESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
SIYG+ F DE + +L+ G ++MANAG D NGSQFF T TP L+ +H +FGK+
Sbjct: 78 GRSIYGEKFADE-NFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKI 135
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 65/126 (51%), Gaps = 13/126 (10%)
Query: 9 SVGDIDIELWSREAPKACRNFVQLCM--EG---------YYNNTIIHRVVKGFIAQXXX- 56
G + EL+S PK C NF LC +G +Y + + HRVVK F+ Q
Sbjct: 39 PAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDF 98
Query: 57 XXXXXXXXESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKH 116
ESIYG F+DE + ++ L++MAN GKD NGSQFF T TP L+ H
Sbjct: 99 SEGNGRGGESIYGGFFEDESFA-VKHNAAFLLSMANRGKDTNGSQFFITTKPTPHLDGHH 157
Query: 117 TIFGKV 122
+FG+V
Sbjct: 158 VVFGQV 163
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 64/128 (50%), Gaps = 13/128 (10%)
Query: 7 KTSVGDIDIELWSREAPKACRNFVQLCM-----------EGYYNNTIIHRVVKGFIAQXX 55
+ VG I +L+S PK C+NF+ LC + Y + HRVVK F+ Q
Sbjct: 30 REPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGG 89
Query: 56 X-XXXXXXXXESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNS 114
ESIYG FKDE + L+ R L++MAN GK NGSQFF T P L+
Sbjct: 90 DFSEGNGKGGESIYGGYFKDE-NFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDG 148
Query: 115 KHTIFGKV 122
H +FG V
Sbjct: 149 VHVVFGLV 156
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 11 GDIDIELWSREAPKACRNFVQLC--MEGY-YNNTIIHRVVKGFIAQXXX-XXXXXXXXES 66
G I +L+ PK +NF +L G+ Y ++I HRV+ F+ Q +S
Sbjct: 18 GRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKS 77
Query: 67 IYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
IYG+ F DE + +++ + GL++MANAG + NGSQFF T T L+ KH +FG+V
Sbjct: 78 IYGEKFADE-NFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEV 132
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 11 GDIDIELWSREAPKACRNFVQLC--MEGY-YNNTIIHRVVKGFIAQXXX-XXXXXXXXES 66
G I +L+ PK +NF +L G+ Y ++I HRV+ F+ Q +S
Sbjct: 17 GRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKS 76
Query: 67 IYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
IYG+ F DE + +++ + GL++MANAG + NGSQFF T T L+ KH +FG+V
Sbjct: 77 IYGEKFADE-NFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEV 131
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 68/136 (50%), Gaps = 11/136 (8%)
Query: 10 VGDIDIELWSREAPKACRNFVQLCMEGY--------YNNTIIHRVVKGFIAQXXX-XXXX 60
VG + IEL++ PK NF Q C + Y + HRV+K F+ Q
Sbjct: 24 VGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGD 83
Query: 61 XXXXESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFG 120
SIY PF DE + +LR GL++MAN+G NG QFF T + L+ KH +FG
Sbjct: 84 GTGVASIYRGPFADE-NFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFG 142
Query: 121 KVAGDTIYNMIKLDEI 136
K+ D + M K++ +
Sbjct: 143 KII-DGLLVMRKIENV 157
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 9 SVGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXX-XXXXXXXX 64
+G + EL++ + PK NF L +G+ Y + HR++ GF+ Q
Sbjct: 16 PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGNFTHCNGTGG 75
Query: 65 ESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
+SIYG+ F+DE + L+ G+++MANAG + NGSQFF A T L+ KH +FGKV
Sbjct: 76 KSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKV 132
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 9 SVGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXX-XXXXXXXX 64
+G + EL++ + PK NF L +G+ Y + HR++ GF+ Q
Sbjct: 16 PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGNFTHHNGTGG 75
Query: 65 ESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
+SIYG+ F+DE + L+ G+++MANAG + NGSQFF A T L+ KH +FGKV
Sbjct: 76 KSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKV 132
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 66/117 (56%), Gaps = 5/117 (4%)
Query: 10 VGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXX-XXXXXXXXE 65
+G + EL++ + PK NF L +G+ Y + HR++ GF+ Q +
Sbjct: 36 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 95
Query: 66 SIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
SIYG+ F+DE + L+ G+++MANAG + NGSQFF A T L+ KH +FGKV
Sbjct: 96 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKV 151
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 9 SVGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXX-XXXXXXXX 64
+G + EL++ + PK NF L +G+ Y + HR++ GF+ Q
Sbjct: 16 PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGG 75
Query: 65 ESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
+SIYG+ F+DE + L+ G+++MANAG + NGSQFF A T L+ KH +FGKV
Sbjct: 76 KSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKV 132
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 9 SVGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXX-XXXXXXXX 64
+G + EL++ + PK NF L +G+ Y + HR++ GF+ Q
Sbjct: 16 PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGG 75
Query: 65 ESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
+SIYG+ F+DE + L+ G+++MANAG + NGSQFF A T L+ KH +FGKV
Sbjct: 76 KSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKV 132
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 9 SVGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXX-XXXXXXXX 64
+G + EL++ + PK NF L +G+ Y + HR++ GF+ Q
Sbjct: 15 PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGG 74
Query: 65 ESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
+SIYG+ F+DE + L+ G+++MANAG + NGSQFF A T L+ KH +FGKV
Sbjct: 75 KSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKV 131
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 9 SVGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXX-XXXXXXXX 64
+G + EL++ + PK NF L +G+ Y + HR++ GF+ Q
Sbjct: 16 PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGG 75
Query: 65 ESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
+SIYG+ F+DE + L+ G+++MANAG + NGSQFF A T L+ KH +FGKV
Sbjct: 76 KSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKV 132
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 9 SVGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXX-XXXXXXXX 64
+G + EL++ + PK NF L +G+ Y + HR++ GF+ Q
Sbjct: 15 PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTHHNGTGG 74
Query: 65 ESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
+SIYG+ F+DE + L+ G+++MANAG + NGSQFF A T L+ KH +FGKV
Sbjct: 75 KSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKV 131
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 9 SVGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXX-XXXXXXXX 64
+G + EL++ + PK NF L +G+ Y + HR++ GF+ Q
Sbjct: 24 PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGG 83
Query: 65 ESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
+SIYG+ F+DE + L+ G+++MANAG + NGSQFF A T L+ KH +FGKV
Sbjct: 84 KSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKV 140
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 69/135 (51%), Gaps = 5/135 (3%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQXXXXXXXXXX 63
VLL TS G+I++EL ++AP + +NFV G+YNNT HRV+ GF+ Q
Sbjct: 7 VLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQ 66
Query: 64 XESIYGKPFKDEIHSRLRFVRRGLVAMA-NAGKDDNGSQFFFTLAATPELNSKHTIFG-K 121
+ P K+E + LR RG +AMA A KD SQFF +A L+ FG
Sbjct: 67 KKP--NPPIKNEADNGLRNT-RGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYA 123
Query: 122 VAGDTIYNMIKLDEI 136
V G + M D+I
Sbjct: 124 VFGKVVKGMDVADKI 138
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 69/135 (51%), Gaps = 5/135 (3%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQXXXXXXXXXX 63
VLL TS G+I++EL ++AP + +NFV G+YNNT HRV+ GF+ Q
Sbjct: 7 VLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQ 66
Query: 64 XESIYGKPFKDEIHSRLRFVRRGLVAMA-NAGKDDNGSQFFFTLAATPELNSKHTIFG-K 121
+ P K+E + LR RG +AMA A KD SQFF +A L+ FG
Sbjct: 67 KKP--NPPIKNEADNGLRNT-RGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYA 123
Query: 122 VAGDTIYNMIKLDEI 136
V G + M D+I
Sbjct: 124 VFGKVVKGMDVADKI 138
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 65/118 (55%), Gaps = 5/118 (4%)
Query: 9 SVGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXX-XXXXXXXX 64
+G + EL++ + PK NF L +G+ Y + HR++ GF+ Q
Sbjct: 16 PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGG 75
Query: 65 ESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
+SIYG+ F+DE + L+ G++ MANAG + NGSQFF A T L+ KH +FGKV
Sbjct: 76 KSIYGEKFEDE-NFILKHTGPGILTMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKV 132
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 9 SVGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXX-XXXXXXXX 64
+G + EL++ + PK NF L +G+ Y + H+++ GF+ Q
Sbjct: 16 PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHKIIPGFMCQGGDFTRHNGTGG 75
Query: 65 ESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
+SIYG+ F+DE + L+ G+++MANAG + NGSQFF A T L+ KH +FGKV
Sbjct: 76 KSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKV 132
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 63/118 (53%), Gaps = 5/118 (4%)
Query: 9 SVGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXX-XXXXXXXX 64
+G + +L++ PK NF LC +G+ Y + HRV+ F+ Q
Sbjct: 14 PIGRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFMLQGGDFTAGNGTGG 73
Query: 65 ESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
+SIYG F DE + + R GL++MANAG + NGSQFF T P L+ KH +FG+V
Sbjct: 74 KSIYGGKFPDE-NFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEV 130
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 15/152 (9%)
Query: 10 VGDIDIELWSREAPKACRNFVQLCMEGY--------YNNTIIHRVVKGFIAQXXXXXXXX 61
+G EL+ PK NF Q C Y Y NTI HRV+K F+ Q
Sbjct: 73 LGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHN 132
Query: 62 XXXE-SIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFG 120
SIYG+ F DE + ++ + GL++MAN+G + NG QFF T L+ K+ +FG
Sbjct: 133 GSGSLSIYGEKFDDE-NFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFG 191
Query: 121 KVA-GDTIYNMIKLDEIMVDHVSTYLEYRKRI 151
++ D++ + K++ + V+ Y+ Y+ +I
Sbjct: 192 RIIDNDSLLLLKKIENV---SVTPYI-YKPKI 219
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 5/118 (4%)
Query: 9 SVGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXX-XXXXXXXX 64
+G + EL++ + PK NF L +G+ Y + HR++ GF+ Q
Sbjct: 16 PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGG 75
Query: 65 ESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
+SIYG+ F+DE + L+ G+++MANAG + NGSQFF A T L+ H +FGKV
Sbjct: 76 KSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKV 132
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 5/117 (4%)
Query: 10 VGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXX-XXXXXXXXE 65
+G I +L+ PK NF LC +G+ Y + HRV+ F+ Q +
Sbjct: 15 LGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAGNGTGGK 74
Query: 66 SIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
SIYG F DE + +L+ + GL++MANAG + NGSQFF T T L+ KH +FG+V
Sbjct: 75 SIYGAKFADE-NFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEV 130
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 5/118 (4%)
Query: 9 SVGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXX-XXXXXXXX 64
+G + EL++ + PK NF L +G+ Y + HR++ GF+ Q
Sbjct: 15 PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGG 74
Query: 65 ESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
+SIYG+ F+DE + L+ G+++MANAG + NGSQFF A T L+ KH +FG V
Sbjct: 75 KSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGKHVVFGAV 131
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 5/118 (4%)
Query: 9 SVGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXX-XXXXXXXX 64
+G + EL++ + PK NF L +G+ Y + HR++ GF+ Q
Sbjct: 16 PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGG 75
Query: 65 ESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
+SIYG+ F+DE + L+ G+++MANAG + NGSQFF A T L+ H +FGKV
Sbjct: 76 KSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGXHVVFGKV 132
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 5/118 (4%)
Query: 9 SVGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXX-XXXXXXXX 64
+G + EL++ + PK NF L +G+ Y + HR++ GF+ Q
Sbjct: 20 PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGG 79
Query: 65 ESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
+SIYG+ F+DE + L+ G+++MANAG + NGSQFF A T L+ H +FGKV
Sbjct: 80 KSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKV 136
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 64/117 (54%), Gaps = 5/117 (4%)
Query: 10 VGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXX-XXXXXXXXE 65
+G + EL++ + PK NF L +G+ Y + HR++ GF Q +
Sbjct: 16 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFXCQGGDFTRHNGTGGK 75
Query: 66 SIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
SIYG+ F+DE + L+ G+++ ANAG + NGSQFF A T L+ KH +FGKV
Sbjct: 76 SIYGEKFEDE-NFILKHTGPGILSXANAGPNTNGSQFFICTAKTEWLDGKHVVFGKV 131
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 62/117 (52%), Gaps = 5/117 (4%)
Query: 10 VGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXX-XXXXXXXXE 65
+G + +EL + PK NF LC +G+ Y + HRV+ F+ Q +
Sbjct: 18 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGK 77
Query: 66 SIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
SIYG F DE + L+ V G+++MANAG + NGSQFF T L+ KH +FG V
Sbjct: 78 SIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHV 133
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 62/117 (52%), Gaps = 5/117 (4%)
Query: 10 VGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXX-XXXXXXXXE 65
+G + +EL + PK NF LC +G+ Y + HRV+ F+ Q +
Sbjct: 17 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGK 76
Query: 66 SIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
SIYG F DE + L+ V G+++MANAG + NGSQFF T L+ KH +FG V
Sbjct: 77 SIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHV 132
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 62/117 (52%), Gaps = 5/117 (4%)
Query: 10 VGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXX-XXXXXXXXE 65
+G + +EL + PK NF LC +G+ Y + HRV+ F+ Q +
Sbjct: 17 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGK 76
Query: 66 SIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
SIYG F DE + L+ V G+++MANAG + NGSQFF T L+ KH +FG V
Sbjct: 77 SIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHV 132
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 62/117 (52%), Gaps = 5/117 (4%)
Query: 10 VGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXX-XXXXXXXXE 65
+G + +EL + PK NF LC +G+ Y + HRV+ F+ Q +
Sbjct: 16 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGK 75
Query: 66 SIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
SIYG F DE + L+ V G+++MANAG + NGSQFF T L+ KH +FG V
Sbjct: 76 SIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHV 131
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 5/118 (4%)
Query: 9 SVGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXX-XXXXXXXX 64
+G I +EL+S P+ NF LC +G+ + N+I HRV+ F+ Q
Sbjct: 19 PLGRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFVCQGGDITKHDGTGG 78
Query: 65 ESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
+SIYG F+DE + ++ GL++MAN G++ N SQF TL L+ KH +FG V
Sbjct: 79 QSIYGDKFEDE-NFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFGFV 135
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 63/131 (48%), Gaps = 20/131 (15%)
Query: 7 KTSVGDIDIELWSREAPKACRNFVQLCM--EGY--------YNNTIIHRVVKGFIAQXXX 56
+T G I +EL++ + P NF LC +G Y + HR++ F+ Q
Sbjct: 30 QTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGD 89
Query: 57 -XXXXXXXXESIYGKPFKDEIHSRLRFVRRG----LVAMANAGKDDNGSQFFFTLAATPE 111
ESIYG F+DE FV L++MANAG + NGSQFF T P
Sbjct: 90 FTRGDGTGGESIYGSKFRDE-----NFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPW 144
Query: 112 LNSKHTIFGKV 122
L+ KH +FGKV
Sbjct: 145 LDGKHVVFGKV 155
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 62/117 (52%), Gaps = 5/117 (4%)
Query: 10 VGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXX-XXXXXXXXE 65
G I +EL S P+ NF LC G+ Y+N HRV+ F+ Q +
Sbjct: 24 AGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGK 83
Query: 66 SIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
SIYG+ F DE + +LR G+++MAN+G + NGSQFF L+ KH +FG+V
Sbjct: 84 SIYGRKFDDE-NFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRV 139
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 9 SVGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXX-XXXXXXXX 64
G I + L S P NF LC +G+ + + HR++ F+ Q
Sbjct: 16 PAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGG 75
Query: 65 ESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA 123
+SIYGK F DE + L+ GL++MAN+G + NGSQFF T T L+ KH +FG+V
Sbjct: 76 KSIYGKKFDDE-NFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVT 133
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 9 SVGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXX-XXXXXXXX 64
G I + L S P NF LC +G+ + + HR++ F+ Q
Sbjct: 24 PAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGG 83
Query: 65 ESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA 123
+SIYGK F DE + L+ GL++MAN+G + NGSQFF T T L+ KH +FG+V
Sbjct: 84 KSIYGKKFDDE-NFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVT 141
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 11 GDIDIELWSREAPKACRNFVQLCMEG----------YYNNTIIHRVVKGFIAQXXX-XXX 59
G I +EL+ PK NF LC ++ + HR++ F+ Q
Sbjct: 18 GRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRG 77
Query: 60 XXXXXESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIF 119
ESIYG+ F DE + + + G+++MANAG + NGSQFF T L+ KH +F
Sbjct: 78 NGTGGESIYGEKFPDE-NFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVF 136
Query: 120 GKV 122
G+V
Sbjct: 137 GRV 139
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQXXXXXXXXXX 63
V T+ GDI I+ + +AP+ +NF+ C EG+YNNTI HRV+ GF+ Q
Sbjct: 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQ--GGGFEPGM 59
Query: 64 XESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGS-QFFFTLAATPELN 113
+ +P K+E ++ L+ RG +AMA + + QFF + LN
Sbjct: 60 KQKATKEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLN 109
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQXXXXXXXXXX 63
V T+ GDI I+ + +AP+ +NF+ C EG+YNNTI HRV+ GF+ Q
Sbjct: 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQ--GGGFEPGM 59
Query: 64 XESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGS-QFFFTLAATPELN 113
+ +P K+E ++ L+ RG +AMA + + QFF + LN
Sbjct: 60 KQKATKEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLN 109
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Query: 9 SVGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQXXX-XXXXXXXX 64
G I L S P NF LC +G+ + + HR++ F Q
Sbjct: 25 PAGRIQXLLRSDVVPXTAENFRCLCTHEKGFGFKGSSFHRIIPQFXCQGGDFTNHNGTGG 84
Query: 65 ESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
+SIYGK F DE + L+ GL++ AN+G + NGSQFF T T L+ KH +FG+V
Sbjct: 85 KSIYGKKFDDE-NFILKHTGPGLLSXANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEV 141
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 3 AVLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQXXXXXXXXX 62
++ L+T+ G I ++L++ +AP+ NF Q +G+Y+ TI HRV+ GF+ Q
Sbjct: 1 SIKLQTNHGTITLKLFADKAPETAANFEQYVKDGHYDGTIFHRVIDGFMIQGGGFEPGMK 60
Query: 63 XXESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFF 104
+ P K+E ++ L ++ +AMA + S FF
Sbjct: 61 QKSTR--APIKNEANNGLS-NKKYTIAMARTPDPHSASAQFF 99
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQ 53
V L T+ G I +EL +APK NF+ +G+Y+ TI HRV+ GF+ Q
Sbjct: 6 VELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQ 55
>pdb|3AU2|A Chain A, Dna Polymerase X From Thermus Thermophilus Hb8 Complexed
With Ca-Dgtp
pdb|3AU6|A Chain A, Dna Polymerase X From Thermus Thermophilus Hb8 Ternary
Complex With PrimerTEMPLATE DNA AND DDGTP
pdb|3AUO|A Chain A, Dna Polymerase X From Thermus Thermophilus Hb8 Ternary
Complex With 1- Nt Gapped Dna And Ddgtp
pdb|3AUO|B Chain B, Dna Polymerase X From Thermus Thermophilus Hb8 Ternary
Complex With 1- Nt Gapped Dna And Ddgtp
Length = 575
Score = 27.7 bits (60), Expect = 3.8, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 7 KTSVGDIDIELWSREAPKACRNFVQL 32
K +VGD+D + SRE +A FV+L
Sbjct: 193 KDTVGDLDFLVASREGERAVEGFVRL 218
>pdb|3B0Y|A Chain A, K263d Mutant Of Polx From Thermus Thermophilus Hb8
Complexed With Ca- Dgtp
Length = 575
Score = 27.7 bits (60), Expect = 3.8, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 7 KTSVGDIDIELWSREAPKACRNFVQL 32
K +VGD+D + SRE +A FV+L
Sbjct: 193 KDTVGDLDFLVASREGERAVEGFVRL 218
>pdb|3B0X|A Chain A, K263a Mutant Of Polx From Thermus Thermophilus Hb8
Complexed With Ca- Dgtp
Length = 575
Score = 27.7 bits (60), Expect = 3.8, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 7 KTSVGDIDIELWSREAPKACRNFVQL 32
K +VGD+D + SRE +A FV+L
Sbjct: 193 KDTVGDLDFLVASREGERAVEGFVRL 218
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,351,795
Number of Sequences: 62578
Number of extensions: 201100
Number of successful extensions: 617
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 432
Number of HSP's gapped (non-prelim): 81
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)