Query psy7836
Match_columns 189
No_of_seqs 165 out of 1563
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 20:07:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7836.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7836hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0881|consensus 100.0 3.2E-51 6.9E-56 300.0 8.8 153 1-155 9-162 (164)
2 KOG0546|consensus 100.0 2E-49 4.3E-54 334.5 11.9 154 3-162 15-181 (372)
3 KOG0880|consensus 100.0 1.2E-48 2.5E-53 305.6 13.4 156 3-164 46-207 (217)
4 cd01928 Cyclophilin_PPIL3_like 100.0 6.6E-48 1.4E-52 298.0 17.2 150 3-154 2-152 (153)
5 cd01927 cyclophilin_WD40 cyclo 100.0 1.8E-47 3.9E-52 294.1 15.9 147 5-153 1-148 (148)
6 cd01923 cyclophilin_RING cyclo 100.0 3.3E-47 7E-52 295.8 17.5 151 3-155 1-152 (159)
7 cd01925 cyclophilin_CeCYP16-li 100.0 1.2E-46 2.5E-51 295.9 18.1 155 2-156 6-160 (171)
8 COG0652 PpiB Peptidyl-prolyl c 100.0 5.9E-47 1.3E-51 291.9 15.4 147 3-155 1-156 (158)
9 cd01922 cyclophilin_SpCYP2_lik 100.0 1.7E-46 3.7E-51 288.0 15.4 145 5-152 1-146 (146)
10 KOG0882|consensus 100.0 3.2E-47 7E-52 327.5 11.7 152 2-155 405-557 (558)
11 cd01921 cyclophilin_RRM cyclop 100.0 1.3E-45 2.8E-50 288.7 16.3 149 5-155 1-158 (166)
12 KOG0883|consensus 100.0 7.8E-46 1.7E-50 314.0 11.7 151 3-155 279-430 (518)
13 PTZ00221 cyclophilin; Provisio 100.0 1.9E-44 4.2E-49 296.3 17.5 176 2-186 53-247 (249)
14 KOG0885|consensus 100.0 3.5E-45 7.5E-50 308.6 12.6 154 2-155 13-166 (439)
15 KOG0879|consensus 100.0 1.4E-44 3.1E-49 267.8 9.3 151 2-158 16-176 (177)
16 KOG0884|consensus 100.0 4.1E-44 8.9E-49 261.2 11.4 153 3-157 2-156 (161)
17 PRK10791 peptidyl-prolyl cis-t 100.0 3.7E-42 7.9E-47 268.6 16.6 148 4-156 2-163 (164)
18 PRK10903 peptidyl-prolyl cis-t 100.0 3.8E-42 8.2E-47 274.2 17.0 148 3-155 30-188 (190)
19 cd01926 cyclophilin_ABH_like c 100.0 4.7E-42 1E-46 268.1 15.5 146 4-153 8-163 (164)
20 PTZ00060 cyclophilin; Provisio 100.0 4.8E-42 1E-46 272.3 14.9 151 3-160 22-183 (183)
21 PLN03149 peptidyl-prolyl isome 100.0 6.9E-42 1.5E-46 271.9 15.2 145 8-158 30-185 (186)
22 cd01920 cyclophilin_EcCYP_like 100.0 3.6E-41 7.8E-46 260.9 15.2 142 6-152 2-154 (155)
23 cd00317 cyclophilin cyclophili 100.0 1.7E-40 3.7E-45 253.9 15.5 145 5-152 1-146 (146)
24 KOG0111|consensus 100.0 5.7E-40 1.2E-44 261.1 9.8 148 5-159 145-297 (298)
25 PF00160 Pro_isomerase: Cyclop 100.0 3.9E-38 8.5E-43 242.9 16.5 148 4-155 2-155 (155)
26 cd01924 cyclophilin_TLP40_like 100.0 5.3E-37 1.1E-41 242.0 14.6 128 7-136 3-165 (176)
27 KOG0415|consensus 100.0 5.9E-37 1.3E-41 257.6 13.5 151 3-155 2-161 (479)
28 KOG0865|consensus 100.0 2E-31 4.2E-36 207.2 8.2 145 7-158 14-166 (167)
29 KOG0882|consensus 97.9 1.2E-05 2.5E-10 71.1 3.9 162 3-167 100-273 (558)
30 TIGR03268 methan_mark_3 putati 96.7 0.013 2.7E-07 52.9 9.3 98 12-130 202-300 (503)
31 PRK00969 hypothetical protein; 96.6 0.013 2.9E-07 52.8 9.0 97 12-129 205-302 (508)
32 PRK00969 hypothetical protein; 95.6 0.14 3E-06 46.4 10.1 114 2-135 51-167 (508)
33 COG4070 Predicted peptidyl-pro 95.3 0.092 2E-06 46.3 7.8 94 12-130 204-302 (512)
34 TIGR03268 methan_mark_3 putati 94.9 0.33 7.2E-06 43.9 10.5 114 2-135 47-164 (503)
35 COG4070 Predicted peptidyl-pro 82.4 3.1 6.8E-05 36.9 5.4 39 11-49 376-416 (512)
36 PF12903 DUF3830: Protein of u 76.8 6.4 0.00014 30.2 4.9 28 6-33 3-30 (147)
37 PF05913 DUF871: Bacterial pro 45.1 27 0.00058 30.7 3.6 50 84-134 299-348 (357)
38 PF06138 Chordopox_E11: Chordo 35.7 1.4E+02 0.0031 22.3 5.6 47 3-49 5-61 (130)
39 PHA03001 putative virion core 27.9 2.5E+02 0.0053 21.1 5.7 47 3-49 5-60 (132)
40 PF04126 Cyclophil_like: Cyclo 25.9 2.6E+02 0.0057 20.3 9.5 97 3-133 2-111 (120)
41 PHA03376 BARF1; Provisional 24.9 2.9E+02 0.0062 22.5 6.0 89 85-177 75-175 (221)
No 1
>KOG0881|consensus
Probab=100.00 E-value=3.2e-51 Score=299.97 Aligned_cols=153 Identities=48% Similarity=0.825 Sum_probs=148.2
Q ss_pred CcEEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCccCCceEEEeecCcEEecCCCCCCCCCCCcccCCCCCCcccCCc
Q psy7836 1 MQAVLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTGGESIYGKPFKDEIHSRL 80 (189)
Q Consensus 1 ~~~v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~rv~~~~~iqgGd~~~~~~~~~~~~g~~~~~E~~~~l 80 (189)
+..|.++|++|.|.+|||-+.||+||+||.+|++.|||+|..|||++++|+||||||+++|.||.++||..|.||.++.|
T Consensus 9 ~~~V~LeTsmG~i~~ElY~kHaP~TC~NF~eLarrgYYn~v~FHRii~DFmiQGGDPTGTGRGGaSIYG~kF~DEi~~dL 88 (164)
T KOG0881|consen 9 PPNVTLETSMGKITLELYWKHAPRTCQNFAELARRGYYNGVIFHRIIKDFMIQGGDPTGTGRGGASIYGDKFEDEIHSDL 88 (164)
T ss_pred CCeEEEeecccceehhhhhhcCcHHHHHHHHHHhcccccceeeeehhhhheeecCCCCCCCCCccccccchhhhhhhhhh
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceEEEEeccCCCCCCceEEEEcCCCCCCCCCCeEEEEEE-cCcchhhhhhhhcccCCCCCcccCeEEEEEee
Q psy7836 81 RFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA-GDTIYNMIKLDEIMVDHVSTYLEYRKRINYEG 155 (189)
Q Consensus 81 ~~~~~G~vsm~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~V~-G~~v~~l~~i~~~~~~~~~~P~~~i~I~~~~~ 155 (189)
+|..+|.|||||.+||+|||||||+|++.+||||+|++||||. ||++ +.++..+.+++.++|..+++|.+...
T Consensus 89 khTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~v--ikr~G~v~Td~~DRPi~~~kIika~~ 162 (164)
T KOG0881|consen 89 KHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEV--IKRMGMVETDNSDRPIDEVKIIKAYP 162 (164)
T ss_pred cccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHH--HHhhcceecCCCCCCccceeeEeeec
Confidence 9999999999999999999999999999999999999999999 9988 99999999999999999999998543
No 2
>KOG0546|consensus
Probab=100.00 E-value=2e-49 Score=334.52 Aligned_cols=154 Identities=40% Similarity=0.657 Sum_probs=145.0
Q ss_pred EEEEEecceeEEEEEcCCCChHHHHHHHHHHhc--C---------ccCCceEEEeecCcEEecCCCC-CCCCCCCcccCC
Q psy7836 3 AVLLKTSVGDIDIELWSREAPKACRNFVQLCME--G---------YYNNTIIHRVVKGFIAQGGDPT-GTGTGGESIYGK 70 (189)
Q Consensus 3 ~v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~--g---------~Y~g~~f~rv~~~~~iqgGd~~-~~~~~~~~~~g~ 70 (189)
+-+-.-+.|||++|||.+.||+||+||++||++ | .|+|+.||||+++|||||||++ ++|+||.||||.
T Consensus 15 ISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtGGeSIYG~ 94 (372)
T KOG0546|consen 15 ISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTGGESIYGE 94 (372)
T ss_pred EEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCCccccccc
Confidence 334455789999999999999999999999985 2 4999999999999999999996 899999999999
Q ss_pred CCCCcccCCcccccceEEEEeccCCCCCCceEEEEcCCCCCCCCCCeEEEEEE-cCcchhhhhhhhcccCCCCCcccCeE
Q psy7836 71 PFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA-GDTIYNMIKLDEIMVDHVSTYLEYRK 149 (189)
Q Consensus 71 ~~~~E~~~~l~~~~~G~vsm~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~V~-G~~v~~l~~i~~~~~~~~~~P~~~i~ 149 (189)
.|.||++ .++|+++++|||||.|||+||||||||+.++|||||+|+|||+|+ |.+| +..|+.+.++..++|..+|+
T Consensus 95 ~FdDEnF-~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~V--Vr~IEn~~~d~~skP~~dV~ 171 (372)
T KOG0546|consen 95 KFDDENF-ELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEV--VREIENLETDEESKPLADVV 171 (372)
T ss_pred ccccccc-eeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhH--HHHHhccccccCCCCccceE
Confidence 9999999 799999999999999999999999999999999999999999999 9988 99999999999999999999
Q ss_pred EEEEeeccccccc
Q psy7836 150 RINYEGAGKVEWG 162 (189)
Q Consensus 150 I~~~~~~g~l~~~ 162 (189)
|.+ ||+|..+
T Consensus 172 I~d---CGel~~~ 181 (372)
T KOG0546|consen 172 ISD---CGELVKK 181 (372)
T ss_pred ecc---ccccccc
Confidence 998 9988877
No 3
>KOG0880|consensus
Probab=100.00 E-value=1.2e-48 Score=305.65 Aligned_cols=156 Identities=42% Similarity=0.661 Sum_probs=145.7
Q ss_pred EEEEEecceeEEEEEcCCCChHHHHHHHHHHhcC---c-cCCceEEEeecCcEEecCCCC-CCCCCCCcccCCCCCCccc
Q psy7836 3 AVLLKTSVGDIDIELWSREAPKACRNFVQLCMEG---Y-YNNTIIHRVVKGFIAQGGDPT-GTGTGGESIYGKPFKDEIH 77 (189)
Q Consensus 3 ~v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g---~-Y~g~~f~rv~~~~~iqgGd~~-~~~~~~~~~~g~~~~~E~~ 77 (189)
.....-..|||+|.||++.+|+||+||.+||.++ + |.|++||||+|+|||||||++ +++.|+.++||.+|+||++
T Consensus 46 i~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g~gtGg~SIyG~~F~DENf 125 (217)
T KOG0880|consen 46 IEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKGDGTGGKSIYGEKFPDENF 125 (217)
T ss_pred EEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccCCCCCCeEeecCCCCCccc
Confidence 3444567899999999999999999999999843 3 999999999999999999996 6799999999999999999
Q ss_pred CCcccccceEEEEeccCCCCCCceEEEEcCCCCCCCCCCeEEEEEE-cCcchhhhhhhhcccCCCCCcccCeEEEEEeec
Q psy7836 78 SRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA-GDTIYNMIKLDEIMVDHVSTYLEYRKRINYEGA 156 (189)
Q Consensus 78 ~~l~~~~~G~vsm~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~V~-G~~v~~l~~i~~~~~~~~~~P~~~i~I~~~~~~ 156 (189)
.|+|+++|.|||||.+|++||||||||+...+||||+|+|||+|+ ||++ +.+|+.+++|++++|.++++|.+ |
T Consensus 126 -~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdv--v~~Ie~~~TD~~dkP~e~v~I~~---~ 199 (217)
T KOG0880|consen 126 -KLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDV--VRKIENVKTDERDKPLEDVVIAN---C 199 (217)
T ss_pred -eeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHH--HHHHHhcccCCCCCccccEEEee---c
Confidence 799999999999999999999999999999999999999999999 9998 77999999999999999999998 9
Q ss_pred cccccccc
Q psy7836 157 GKVEWGER 164 (189)
Q Consensus 157 g~l~~~~~ 164 (189)
|+|+++..
T Consensus 200 g~l~~~~~ 207 (217)
T KOG0880|consen 200 GELPVEYL 207 (217)
T ss_pred Ccccccch
Confidence 99999843
No 4
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=6.6e-48 Score=297.99 Aligned_cols=150 Identities=50% Similarity=0.848 Sum_probs=143.7
Q ss_pred EEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCccCCceEEEeecCcEEecCCCCCCCCCCCcccCCCCCCcccCCccc
Q psy7836 3 AVLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTGGESIYGKPFKDEIHSRLRF 82 (189)
Q Consensus 3 ~v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~rv~~~~~iqgGd~~~~~~~~~~~~g~~~~~E~~~~l~~ 82 (189)
+|+|+|+.|+|+||||++.||+||+||++||++|||+|+.|||++|+|++|+||+.+++.++.++++..+++|..+.++|
T Consensus 2 ~v~l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~f~iq~Gd~~~~g~g~~~~~~~~~~~e~~~~~~~ 81 (153)
T cd01928 2 SVTLHTNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGTGKGGESIWGKKFEDEFRETLKH 81 (153)
T ss_pred EEEEEEccccEEEEEcCCCCcHHHHHHHHHHhcCccCCcEEEEeCCCCEEEccccCCCCCCCCccCCCccccccccCCCc
Confidence 48999999999999999999999999999999999999999999999999999998888888888999999998877899
Q ss_pred ccceEEEEeccCCCCCCceEEEEcCCCCCCCCCCeEEEEEE-cCcchhhhhhhhcccCCCCCcccCeEEEEEe
Q psy7836 83 VRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA-GDTIYNMIKLDEIMVDHVSTYLEYRKRINYE 154 (189)
Q Consensus 83 ~~~G~vsm~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~V~-G~~v~~l~~i~~~~~~~~~~P~~~i~I~~~~ 154 (189)
+++|+|+|++.++++++|||||++.++|+||++|+|||+|+ |+++ +++|++++++++++|..+|+|.+|+
T Consensus 82 ~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dv--l~~I~~~~~~~~~~P~~~i~I~~~~ 152 (153)
T cd01928 82 DSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFET--LDTLEKLPVDKKYRPLEEIRIKDVT 152 (153)
T ss_pred CCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHH--HHHHHcCCCCCCCCCcCCeEEEEeE
Confidence 99999999999999999999999999999999999999999 9988 9999999999999999999999875
No 5
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=1.8e-47 Score=294.07 Aligned_cols=147 Identities=50% Similarity=0.817 Sum_probs=140.5
Q ss_pred EEEecceeEEEEEcCCCChHHHHHHHHHHhcCccCCceEEEeecCcEEecCCCCCCCCCCCcccCCCCCCcccCCccccc
Q psy7836 5 LLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTGGESIYGKPFKDEIHSRLRFVR 84 (189)
Q Consensus 5 ~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~rv~~~~~iqgGd~~~~~~~~~~~~g~~~~~E~~~~l~~~~ 84 (189)
+|+|++|+|+||||++.||+||+||++||++|||+++.|||++|+|++|+||+.+++.++.++++..+++|..+.++|++
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~g~~~~~~~~~~~e~~~~~~h~~ 80 (148)
T cd01927 1 IIHTTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGDGTGGESIWGKEFEDEFSPSLKHDR 80 (148)
T ss_pred CeEeccccEEEEEeCCCCcHHHHHHHHHhhcCCcCCcEEEEEcCCcEEEecccCCCCCCCCcccCCccccccccccCcCC
Confidence 47999999999999999999999999999999999999999999999999999888888888899999999887899999
Q ss_pred ceEEEEeccCCCCCCceEEEEcCCCCCCCCCCeEEEEEE-cCcchhhhhhhhcccCCCCCcccCeEEEEE
Q psy7836 85 RGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA-GDTIYNMIKLDEIMVDHVSTYLEYRKRINY 153 (189)
Q Consensus 85 ~G~vsm~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~V~-G~~v~~l~~i~~~~~~~~~~P~~~i~I~~~ 153 (189)
+|+|+|++.++++++|||||++.++|+||++|+|||+|+ |+++ |++|++++++++++|.++|+|.++
T Consensus 81 ~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dv--l~~I~~~~~~~~~~P~~~i~I~~~ 148 (148)
T cd01927 81 PYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDV--VQRIENVKTDKNDRPYEDIKIINI 148 (148)
T ss_pred CeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHH--HHHHHcCCCCCCCCCcCCeEEEeC
Confidence 999999999999999999999999999999999999999 9988 999999999999999999999863
No 6
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=3.3e-47 Score=295.83 Aligned_cols=151 Identities=46% Similarity=0.796 Sum_probs=144.1
Q ss_pred EEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCccCCceEEEeecCcEEecCCCCCCCCCCCcccCCCCCCcccCCccc
Q psy7836 3 AVLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTGGESIYGKPFKDEIHSRLRF 82 (189)
Q Consensus 3 ~v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~rv~~~~~iqgGd~~~~~~~~~~~~g~~~~~E~~~~l~~ 82 (189)
.|+|+|++|+|+||||++.||+||+||++||+.|+|+|+.|||++|++++|+||+.+++.++.++++..+++|..++++|
T Consensus 1 ~v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~g~~~~~~~g~~~~~E~~~~~~h 80 (159)
T cd01923 1 YVRLHTNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEFKPNLSH 80 (159)
T ss_pred CEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCccCCcEEEEEeCCcEEEecccCCCCCCCccccCCccCcccccCcCc
Confidence 37899999999999999999999999999999999999999999999999999998888889999999999998778899
Q ss_pred ccceEEEEeccCCCCCCceEEEEcCCCCCCCCCCeEEEEEE-cCcchhhhhhhhcccCCCCCcccCeEEEEEee
Q psy7836 83 VRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA-GDTIYNMIKLDEIMVDHVSTYLEYRKRINYEG 155 (189)
Q Consensus 83 ~~~G~vsm~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~V~-G~~v~~l~~i~~~~~~~~~~P~~~i~I~~~~~ 155 (189)
+++|+|+|+++++++++|||||+++++|+||++|+|||||+ |+++ |++|++++++++++|+++|+|.+|.+
T Consensus 81 ~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~v--l~~I~~~~~~~~~~P~~~i~I~~~~i 152 (159)
T cd01923 81 DGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLET--LEAMENVPDPGTDRPKEEIKIEDTSV 152 (159)
T ss_pred CCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHH--HHHHHcCCCCCCCCCCCCeEEEEeEE
Confidence 99999999999999999999999999999999999999999 9887 99999999999999999999999654
No 7
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=1.2e-46 Score=295.91 Aligned_cols=155 Identities=70% Similarity=1.138 Sum_probs=147.4
Q ss_pred cEEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCccCCceEEEeecCcEEecCCCCCCCCCCCcccCCCCCCcccCCcc
Q psy7836 2 QAVLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTGGESIYGKPFKDEIHSRLR 81 (189)
Q Consensus 2 ~~v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~rv~~~~~iqgGd~~~~~~~~~~~~g~~~~~E~~~~l~ 81 (189)
.+|+|+|++|+|+||||++.||+||+||++||+.|+|+|+.|||++|+|++|||++.+++.++.++++..+++|..++++
T Consensus 6 ~~v~i~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~~Y~~~~f~Rvi~~f~iQgGd~~~~g~g~~s~~g~~~~~E~~~~~~ 85 (171)
T cd01925 6 GKVILKTTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTGTGTGGESIYGEPFKDEFHSRLR 85 (171)
T ss_pred cEEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCCCCCCEEEEEcCCcEEEccccCCCCccCcccCCCccCcccccCcC
Confidence 47999999999999999999999999999999999999999999999999999999888888999999999999887889
Q ss_pred cccceEEEEeccCCCCCCceEEEEcCCCCCCCCCCeEEEEEEcCcchhhhhhhhcccCCCCCcccCeEEEEEeec
Q psy7836 82 FVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVAGDTIYNMIKLDEIMVDHVSTYLEYRKRINYEGA 156 (189)
Q Consensus 82 ~~~~G~vsm~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~V~G~~v~~l~~i~~~~~~~~~~P~~~i~I~~~~~~ 156 (189)
|+++|+|+|++.++++++|||||+++++++||++|+|||+|+|++++.+++|++++++++++|.++|+|.+|.+-
T Consensus 86 ~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~i~ 160 (171)
T cd01925 86 FNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSVEVL 160 (171)
T ss_pred CCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEEEE
Confidence 999999999999999999999999999999999999999999877888999999999999999999999997664
No 8
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-47 Score=291.86 Aligned_cols=147 Identities=47% Similarity=0.760 Sum_probs=132.3
Q ss_pred EEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCccCCceEEEeecCcEEecCCCCCC-CCCCCcccCCCCCCcccCCcc
Q psy7836 3 AVLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGT-GTGGESIYGKPFKDEIHSRLR 81 (189)
Q Consensus 3 ~v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~rv~~~~~iqgGd~~~~-~~~~~~~~g~~~~~E~~~~l~ 81 (189)
.|+++|++|+|+|+||++.||+||+||++||+.|||+|+.||||+|+||+||||+.+. +.+++ +++|++|++. ..
T Consensus 1 ~v~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~E~~~-~~ 76 (158)
T COG0652 1 TVILETNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKDENFA-LN 76 (158)
T ss_pred CceeeccCCCEEEEECCCcCcHHHHHHHHHHHcCCCCCceEEEeecCceeecCCCCCCCCCCCC---CCCCcccccc-cc
Confidence 3789999999999999999999999999999999999999999999999999999876 77777 5899999874 44
Q ss_pred ccc--ceEEEEeccC-CCCCCceEEEEcCCCCCCCCCCeEEEEEE-cCcchhhhhhhhcccCCC----CCcccCeEEEEE
Q psy7836 82 FVR--RGLVAMANAG-KDDNGSQFFFTLAATPELNSKHTIFGKVA-GDTIYNMIKLDEIMVDHV----STYLEYRKRINY 153 (189)
Q Consensus 82 ~~~--~G~vsm~~~~-~~~~~sqFfI~l~~~~~ld~~~~vFG~V~-G~~v~~l~~i~~~~~~~~----~~P~~~i~I~~~ 153 (189)
|++ +|+|||||.+ |++++|||||++.++||||++|+|||+|+ ||++ +++|++..+... +.|..+++|.++
T Consensus 77 ~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~Gmdv--vdkI~~~~~~~~~~~~~~~~~~~~i~~~ 154 (158)
T COG0652 77 GDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDV--VDKIKNGDTDDSGYVQDVPADPVKILSV 154 (158)
T ss_pred cccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHH--HHHHHcCCccCCCcccCCCCCCeEEeee
Confidence 555 9999999998 99999999999999999999999999999 9988 999999887643 456788888875
Q ss_pred ee
Q psy7836 154 EG 155 (189)
Q Consensus 154 ~~ 155 (189)
.+
T Consensus 155 ~~ 156 (158)
T COG0652 155 KI 156 (158)
T ss_pred ee
Confidence 54
No 9
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=1.7e-46 Score=288.04 Aligned_cols=145 Identities=50% Similarity=0.901 Sum_probs=138.1
Q ss_pred EEEecceeEEEEEcCCCChHHHHHHHHHHhcCccCCceEEEeecCcEEecCCCCCCCCCCCcccCCCCCCcccCCccccc
Q psy7836 5 LLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTGGESIYGKPFKDEIHSRLRFVR 84 (189)
Q Consensus 5 ~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~rv~~~~~iqgGd~~~~~~~~~~~~g~~~~~E~~~~l~~~~ 84 (189)
+|+|+.|+|+||||++.||+||+||++||++|||+++.|||++|+|++|||++.+++.++.++++..+++|..++++|++
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~~~~~~~~~~~~~e~~~~~~h~~ 80 (146)
T cd01922 1 TLETTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGTGRGGASIYGKKFEDEIHPELKHTG 80 (146)
T ss_pred CeEeccccEEEEEcCCCCcHHHHHHHHHHhcCCcCCcEEEEEcCCcEEEecccCCCCCCcccccCCCcccccccCcCCCC
Confidence 47899999999999999999999999999999999999999999999999999888888888899999999877899999
Q ss_pred ceEEEEeccCCCCCCceEEEEcCCCCCCCCCCeEEEEEE-cCcchhhhhhhhcccCCCCCcccCeEEEE
Q psy7836 85 RGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA-GDTIYNMIKLDEIMVDHVSTYLEYRKRIN 152 (189)
Q Consensus 85 ~G~vsm~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~V~-G~~v~~l~~i~~~~~~~~~~P~~~i~I~~ 152 (189)
+|+|+|++.++++++|||||+++++|+||++|+|||+|+ |+++ +++|++++++ +++|.++|+|.+
T Consensus 81 ~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dv--l~~I~~~~~~-~~~P~~~I~I~~ 146 (146)
T cd01922 81 AGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKV--IENMVEVQTQ-TDRPIDEVKILK 146 (146)
T ss_pred CeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHH--HHHHHhCCCC-CCCcCCCeEEeC
Confidence 999999999999999999999999999999999999999 9988 9999999998 889999999974
No 10
>KOG0882|consensus
Probab=100.00 E-value=3.2e-47 Score=327.48 Aligned_cols=152 Identities=46% Similarity=0.782 Sum_probs=148.9
Q ss_pred cEEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCccCCceEEEeecCcEEecCCCCCCCCCCCcccCCCCCCcccCCcc
Q psy7836 2 QAVLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTGGESIYGKPFKDEIHSRLR 81 (189)
Q Consensus 2 ~~v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~rv~~~~~iqgGd~~~~~~~~~~~~g~~~~~E~~~~l~ 81 (189)
+.+++||++|+|.|.||+++||+||+||-..|++|||+|..||||+++||||+|||.++|+||+++||..|+||.+++|+
T Consensus 405 ~~aiihtt~gdi~~kl~p~ecpktvenf~th~rngyy~~~~fhriik~fmiqtgdp~g~gtggesiwg~dfedefh~~lr 484 (558)
T KOG0882|consen 405 KAAIIHTTQGDIHIKLYPEECPKTVENFTTHSRNGYYDNHTFHRIIKGFMIQTGDPLGDGTGGESIWGKDFEDEFHPNLR 484 (558)
T ss_pred cceEEEecccceEEEecccccchhhhhhhccccCccccCcchHHhhhhheeecCCCCCCCCCCcccccccchhhcCcccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceEEEEeccCCCCCCceEEEEcCCCCCCCCCCeEEEEEE-cCcchhhhhhhhcccCCCCCcccCeEEEEEee
Q psy7836 82 FVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA-GDTIYNMIKLDEIMVDHVSTYLEYRKRINYEG 155 (189)
Q Consensus 82 ~~~~G~vsm~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~V~-G~~v~~l~~i~~~~~~~~~~P~~~i~I~~~~~ 155 (189)
|+++-+|||||.|+|+||||||||+.+.||||++|+|||||+ ||+| +++|+++.+++.++|.++++|.++++
T Consensus 485 hdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~v--vqri~~v~t~k~drp~e~v~iinisv 557 (558)
T KOG0882|consen 485 HDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDV--VQRIEQVKTDKYDRPYEDVKIINISV 557 (558)
T ss_pred cCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhH--HhHhhhcccCcCCCCCCceeEEEEec
Confidence 999999999999999999999999999999999999999999 9999 99999999999999999999999875
No 11
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=1.3e-45 Score=288.73 Aligned_cols=149 Identities=44% Similarity=0.729 Sum_probs=137.4
Q ss_pred EEEecceeEEEEEcCCCChHHHHHHHHHHhcCccCCceEEEeecCcEEecCCCCCCCCCCCcccC-------CCCCCccc
Q psy7836 5 LLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTGGESIYG-------KPFKDEIH 77 (189)
Q Consensus 5 ~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~rv~~~~~iqgGd~~~~~~~~~~~~g-------~~~~~E~~ 77 (189)
+|+|+.|+|+||||++.||+||+||++||++++|+|++|||++|++++||||+..++.++.++++ ..+++|..
T Consensus 1 ll~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~Y~g~~fhrvi~~f~iQgGd~~~~g~~~~~~~~~~~~~~~~~~~~e~~ 80 (166)
T cd01921 1 LLETTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGAGGESIYSQLYGRQARFFEPEIL 80 (166)
T ss_pred CcEeccCCEEEEEcCCCCCHHHHHHHHHHhcCCcCCCEEEEEeCCceEEECCcCCCCCCCcccccccccccCcccCcccC
Confidence 47999999999999999999999999999999999999999999999999999877777766654 35778877
Q ss_pred CCcccccceEEEEeccCCCCCCceEEEEcCC-CCCCCCCCeEEEEEE-cCcchhhhhhhhcccCCCCCcccCeEEEEEee
Q psy7836 78 SRLRFVRRGLVAMANAGKDDNGSQFFFTLAA-TPELNSKHTIFGKVA-GDTIYNMIKLDEIMVDHVSTYLEYRKRINYEG 155 (189)
Q Consensus 78 ~~l~~~~~G~vsm~~~~~~~~~sqFfI~l~~-~~~ld~~~~vFG~V~-G~~v~~l~~i~~~~~~~~~~P~~~i~I~~~~~ 155 (189)
++++|+++|+|+|++.++++++|||||++.+ .++||++|+|||||+ |+++ |++|++++++.+++|.++|+|.+|.+
T Consensus 81 ~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dv--v~~I~~~~~~~~~~P~~~i~I~~~~i 158 (166)
T cd01921 81 PLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDV--LEKINDAIVDDDGRPLKDIRIKHTHI 158 (166)
T ss_pred CccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHH--HHHHHcCCCCCCCCCCCCeEEEEEEE
Confidence 7889999999999999999999999999986 799999999999999 9988 99999999999999999999999654
No 12
>KOG0883|consensus
Probab=100.00 E-value=7.8e-46 Score=314.02 Aligned_cols=151 Identities=48% Similarity=0.796 Sum_probs=147.0
Q ss_pred EEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCccCCceEEEeecCcEEecCCCCCCCCCCCcccCCCCCCcccCCccc
Q psy7836 3 AVLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTGGESIYGKPFKDEIHSRLRF 82 (189)
Q Consensus 3 ~v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~rv~~~~~iqgGd~~~~~~~~~~~~g~~~~~E~~~~l~~ 82 (189)
.|.|.|+.|.|.+||+++.+|++|+||+.||++|||+|+.|||.+.+||||||||+++|.||+++||.+|.||+.+.|.|
T Consensus 279 yvrl~Tn~G~lNlELhcd~~P~aceNFI~lc~~gYYnnt~FHRsIrnFmiQGGDPTGTG~GGeSiWgKpFkDEf~~~l~H 358 (518)
T KOG0883|consen 279 YVRLVTNHGPLNLELHCDYAPRACENFITLCKNGYYNNTIFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEFCSNLSH 358 (518)
T ss_pred eEEEeccCCceeeEeecCcchHHHHHHHHHHhcccccchHHHHHHHHHeeeCCCCCCCCCCCccccCCccccccCCCCCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEEeccCCCCCCceEEEEcCCCCCCCCCCeEEEEEE-cCcchhhhhhhhcccCCCCCcccCeEEEEEee
Q psy7836 83 VRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA-GDTIYNMIKLDEIMVDHVSTYLEYRKRINYEG 155 (189)
Q Consensus 83 ~~~G~vsm~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~V~-G~~v~~l~~i~~~~~~~~~~P~~~i~I~~~~~ 155 (189)
+.||+|||||+|+|+|||||||+..++.+||++|++||+|+ |.++ |.+|+++++++.++|+.+|+|..+.+
T Consensus 359 ~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldt--L~amEnve~d~~DrP~e~I~i~~~~V 430 (518)
T KOG0883|consen 359 DGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDT--LTAMENVETDEKDRPKEEIKIEDAIV 430 (518)
T ss_pred CCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHH--HHHHhcCCCCCCCCcccceEEeeeEE
Confidence 99999999999999999999999999999999999999999 7766 99999999999999999999998764
No 13
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=1.9e-44 Score=296.27 Aligned_cols=176 Identities=26% Similarity=0.344 Sum_probs=158.9
Q ss_pred cEEEEEec-----ceeEEEEEcCCCChHHHHHHHHHHhcC-----------ccCCceEEEeecC-cEEecCCCCCCCCCC
Q psy7836 2 QAVLLKTS-----VGDIDIELWSREAPKACRNFVQLCMEG-----------YYNNTIIHRVVKG-FIAQGGDPTGTGTGG 64 (189)
Q Consensus 2 ~~v~~~T~-----~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~g~~f~rv~~~-~~iqgGd~~~~~~~~ 64 (189)
.+|.|+++ .|+|+||||.+.||+||+||++||++. .|+|+.||||+++ ++||+||+... +
T Consensus 53 ~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~~---g 129 (249)
T PTZ00221 53 CRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDSF---N 129 (249)
T ss_pred CEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCCC---C
Confidence 46778876 578999999999999999999999743 3999999999986 89999998642 3
Q ss_pred CcccCCCCCCcccCCcccccceEEEEeccCCCCCCceEEEEcCCCCCCCCCCeEEEEEE-cCcchhhhhhhhcccCCCCC
Q psy7836 65 ESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA-GDTIYNMIKLDEIMVDHVST 143 (189)
Q Consensus 65 ~~~~g~~~~~E~~~~l~~~~~G~vsm~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~V~-G~~v~~l~~i~~~~~~~~~~ 143 (189)
.+++|..|++|.. .++|+++|+|+|++.++++++||||||+.++|+||++|+|||+|+ |+++ |++|++++++.+++
T Consensus 130 ~s~~G~~f~dE~~-~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdV--v~kIe~v~~d~~gr 206 (249)
T PTZ00221 130 VSSTGTPIADEGY-RHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSL--LEKLESLPLDDVGR 206 (249)
T ss_pred ccCCCCcccCccc-cccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHH--HHHHHcCCcCCCCC
Confidence 4567889999977 688999999999999999999999999999999999999999999 9988 99999999999999
Q ss_pred cccCeEEEEEeeccccccccccccCCce-eeccCCCCCceeecc
Q psy7836 144 YLEYRKRINYEGAGKVEWGERAANIGVT-LYNTNTILSEIECLD 186 (189)
Q Consensus 144 P~~~i~I~~~~~~g~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 186 (189)
|.++|+|.+ ||++.+..++.+...+ ..+.+++.+++.|+.
T Consensus 207 P~~~V~I~~---Cgvl~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 247 (249)
T PTZ00221 207 PLLPVTVSF---CGALTGEKPPGRQQLLAAADDSASSEHVACAA 247 (249)
T ss_pred CCCCeEEEE---CeEecCCCCCcccccchhccCcccchhhhhhh
Confidence 999999998 9999999999998877 778888899999985
No 14
>KOG0885|consensus
Probab=100.00 E-value=3.5e-45 Score=308.56 Aligned_cols=154 Identities=68% Similarity=1.161 Sum_probs=151.0
Q ss_pred cEEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCccCCceEEEeecCcEEecCCCCCCCCCCCcccCCCCCCcccCCcc
Q psy7836 2 QAVLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTGGESIYGKPFKDEIHSRLR 81 (189)
Q Consensus 2 ~~v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~rv~~~~~iqgGd~~~~~~~~~~~~g~~~~~E~~~~l~ 81 (189)
.+|++.|+.|+|.||||+++||++|.||++||..|||+|+.|||++|+|++|||||+++|+||.++||.+|.+|.+++|+
T Consensus 13 gkvil~TT~G~I~iELW~kE~P~acrnFiqKOGegyy~nt~fhrlvp~f~~Qggdp~~~gtGgesiyg~~fadE~h~Rlr 92 (439)
T KOG0885|consen 13 GKVILKTTKGDIDIELWAKECPKACRNFIQLCLEGYYDNTEFHRLVPGFLVQGGDPTGTGTGGESIYGRPFADEFHPRLR 92 (439)
T ss_pred ceEEEEeccCceeeeehhhhhhHHHHHHHHHHHhccccCceeeeeccchhcccCCCCCCCCCccccccccchhhcCccee
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceEEEEeccCCCCCCceEEEEcCCCCCCCCCCeEEEEEEcCcchhhhhhhhcccCCCCCcccCeEEEEEee
Q psy7836 82 FVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVAGDTIYNMIKLDEIMVDHVSTYLEYRKRINYEG 155 (189)
Q Consensus 82 ~~~~G~vsm~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~V~G~~v~~l~~i~~~~~~~~~~P~~~i~I~~~~~ 155 (189)
++++|+|+|||.+.+.||||||+||+++|||+++|++||+|+|..+|++.+|..+.++.+.+|..+-+|.++++
T Consensus 93 f~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~kI~s~EV 166 (439)
T KOG0885|consen 93 FNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPPKIKSVEV 166 (439)
T ss_pred eeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCCCccceeeeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875
No 15
>KOG0879|consensus
Probab=100.00 E-value=1.4e-44 Score=267.80 Aligned_cols=151 Identities=40% Similarity=0.654 Sum_probs=141.4
Q ss_pred cEEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCc--------cCCceEEEeecCcEEecCCC-CCCCCCCCcccCCCC
Q psy7836 2 QAVLLKTSVGDIDIELWSREAPKACRNFVQLCMEGY--------YNNTIIHRVVKGFIAQGGDP-TGTGTGGESIYGKPF 72 (189)
Q Consensus 2 ~~v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Y~g~~f~rv~~~~~iqgGd~-~~~~~~~~~~~g~~~ 72 (189)
|..+-.+..|||.||||++.+|+|++||++.|++.+ |+++.|||++++|||||||. .++|+|-.++|+.+|
T Consensus 16 dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG~~sIy~~~F 95 (177)
T KOG0879|consen 16 DVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTGVASIYGSTF 95 (177)
T ss_pred EEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCceEEEEcCCCC
Confidence 444556789999999999999999999999999865 99999999999999999997 588889999999999
Q ss_pred CCcccCCcccccceEEEEeccCCCCCCceEEEEcCCCCCCCCCCeEEEEEE-cCcchhhhhhhhcccCCCCCcccCeEEE
Q psy7836 73 KDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA-GDTIYNMIKLDEIMVDHVSTYLEYRKRI 151 (189)
Q Consensus 73 ~~E~~~~l~~~~~G~vsm~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~V~-G~~v~~l~~i~~~~~~~~~~P~~~i~I~ 151 (189)
+||++ .++|+.+|+|||||+++++||.|||||.....|||++|+|||+|+ |+.+ +.+|+.+++..+++|+.+|.|+
T Consensus 96 ~DENF-tlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli--~rkIEnvp~G~NnkPKl~v~i~ 172 (177)
T KOG0879|consen 96 PDENF-TLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLI--MRKIENVPTGPNNKPKLPVVIV 172 (177)
T ss_pred CCcce-eeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhh--hhhhhcCCCCCCCCCCCcEEEe
Confidence 99999 699999999999999999999999999999999999999999999 8766 9999999999999999999999
Q ss_pred EEeeccc
Q psy7836 152 NYEGAGK 158 (189)
Q Consensus 152 ~~~~~g~ 158 (189)
. ||+
T Consensus 173 q---CGe 176 (177)
T KOG0879|consen 173 Q---CGE 176 (177)
T ss_pred e---ccc
Confidence 7 775
No 16
>KOG0884|consensus
Probab=100.00 E-value=4.1e-44 Score=261.19 Aligned_cols=153 Identities=44% Similarity=0.743 Sum_probs=147.1
Q ss_pred EEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCccCCceEEEeecCcEEecCCCCCCCCCCCcccCCCCCCcccCCccc
Q psy7836 3 AVLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTGGESIYGKPFKDEIHSRLRF 82 (189)
Q Consensus 3 ~v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~rv~~~~~iqgGd~~~~~~~~~~~~g~~~~~E~~~~l~~ 82 (189)
+|.++|+.|+|.||||.+.+|++|+||+.||...||+++.|||-+|+|++|+|+++.+|.||.++||.+|+||+.+-|+|
T Consensus 2 svtlht~~gdikiev~~e~tpktce~~l~~~~~~~~n~~~~~~~~~~f~v~~~~~~~tgrgg~siwg~~fede~~~~lkh 81 (161)
T KOG0884|consen 2 SVTLHTDVGDIKIEVFCERTPKTCENFLALCASDYYNGCIFHRNIKGFMVQTGDPTHTGRGGNSIWGKKFEDEYSEYLKH 81 (161)
T ss_pred eEEEeeccCcEEEEEEecCChhHHHHHHHHhhhhhccceeecCCCCCcEEEeCCCCCCCCCCccccCCcchHHHHHHHhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEEeccCCCCCCceEEEEcCCCCCCCCCCeEEEEEE-cCcchhhhhhhhcccCCC-CCcccCeEEEEEeecc
Q psy7836 83 VRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA-GDTIYNMIKLDEIMVDHV-STYLEYRKRINYEGAG 157 (189)
Q Consensus 83 ~~~G~vsm~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~V~-G~~v~~l~~i~~~~~~~~-~~P~~~i~I~~~~~~g 157 (189)
+.||.|||||.+|++|+|||||+.+.+||||-+|++||+|+ |.+. +++|+.+++++. .+|..++.|.++++-.
T Consensus 82 ~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~et--ldele~l~v~~ktyrpl~~~~ik~itiha 156 (161)
T KOG0884|consen 82 NVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLET--LDELEKLPVNEKTYRPLNDVHIKDITIHA 156 (161)
T ss_pred ccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhh--HHHHhhcccCccccccchheeeeeeEEec
Confidence 99999999999999999999999999999999999999999 8766 999999999876 8999999999988743
No 17
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=3.7e-42 Score=268.60 Aligned_cols=148 Identities=30% Similarity=0.490 Sum_probs=128.7
Q ss_pred EEEEecceeEEEEEcCCCChHHHHHHHHHHhcCccCCceEEEeecCcEEecCCCCCCCCCCCcccCCCCCCcccCCcccc
Q psy7836 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTGGESIYGKPFKDEIHSRLRFV 83 (189)
Q Consensus 4 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~rv~~~~~iqgGd~~~~~~~~~~~~g~~~~~E~~~~l~~~ 83 (189)
|+|+|+.|+|+|+||++.||+||+||++||+.|||+++.||||+|+|++|||++... .+ ...++.++++|....++|
T Consensus 2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQgGd~~~~-~~-~~~~~~~~~~e~~~~~~~- 78 (164)
T PRK10791 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPG-MK-QKATKEPIKNEANNGLKN- 78 (164)
T ss_pred EEEEEccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEecCcEEEeCCcCCC-CC-cCCCCCCcCCcccccccC-
Confidence 689999999999999999999999999999999999999999999999999997422 11 122356788887655655
Q ss_pred cceEEEEeccC-CCCCCceEEEEcCCCCCCC-------C-CCeEEEEEE-cCcchhhhhhhhcccCC----CCCcccCeE
Q psy7836 84 RRGLVAMANAG-KDDNGSQFFFTLAATPELN-------S-KHTIFGKVA-GDTIYNMIKLDEIMVDH----VSTYLEYRK 149 (189)
Q Consensus 84 ~~G~vsm~~~~-~~~~~sqFfI~l~~~~~ld-------~-~~~vFG~V~-G~~v~~l~~i~~~~~~~----~~~P~~~i~ 149 (189)
++|+||||+.+ +++++|||||++.++++|| + +|+|||+|+ |+++ +++|+++++++ +++|..+|+
T Consensus 79 ~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dv--l~~I~~~~~~~~~~~~~~P~~~v~ 156 (164)
T PRK10791 79 TRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDV--VDKIKGVATGRSGMHQDVPKEDVI 156 (164)
T ss_pred CCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHH--HHHHHcCcCCCCCccCCCcCCCeE
Confidence 89999999975 8999999999999988876 3 699999999 9988 99999999976 369999999
Q ss_pred EEEEeec
Q psy7836 150 RINYEGA 156 (189)
Q Consensus 150 I~~~~~~ 156 (189)
|.+|+++
T Consensus 157 I~~~~i~ 163 (164)
T PRK10791 157 IESVTVS 163 (164)
T ss_pred EEEEEEe
Confidence 9998765
No 18
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=3.8e-42 Score=274.21 Aligned_cols=148 Identities=35% Similarity=0.508 Sum_probs=130.7
Q ss_pred EEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCccCCceEEEeecCcEEecCCCCCCCCCCCcccCCCCCCcccCCccc
Q psy7836 3 AVLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTGGESIYGKPFKDEIHSRLRF 82 (189)
Q Consensus 3 ~v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~rv~~~~~iqgGd~~~~~~~~~~~~g~~~~~E~~~~l~~ 82 (189)
+|+++|+.|+|+||||++.||+||+||++||+.|||+|+.|||++|+|++|||++.....+ ..++.++++|..+.+ |
T Consensus 30 ~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~~~~--~~~~~~~~~e~~~~l-~ 106 (190)
T PRK10903 30 HVLLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQ--KKPNPPIKNEADNGL-R 106 (190)
T ss_pred EEEEEeccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEeCCceEEeCCcCCCCCC--CCCCCcccCcccccC-c
Confidence 6899999999999999999999999999999999999999999999999999997643221 223667888876555 5
Q ss_pred ccceEEEEeccC-CCCCCceEEEEcCCCCCCCC-----CCeEEEEEE-cCcchhhhhhhhcccCC----CCCcccCeEEE
Q psy7836 83 VRRGLVAMANAG-KDDNGSQFFFTLAATPELNS-----KHTIFGKVA-GDTIYNMIKLDEIMVDH----VSTYLEYRKRI 151 (189)
Q Consensus 83 ~~~G~vsm~~~~-~~~~~sqFfI~l~~~~~ld~-----~~~vFG~V~-G~~v~~l~~i~~~~~~~----~~~P~~~i~I~ 151 (189)
+++|+|+|++.+ +++++|||||++.++++||+ +|+|||+|+ |+++ +++|+++++++ +++|..+|+|.
T Consensus 107 ~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dv--l~~I~~~~~~~~~~~~~~P~~~v~I~ 184 (190)
T PRK10903 107 NTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDV--ADKISQVPTHDVGPYQNVPSKPVVIL 184 (190)
T ss_pred CCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHH--HHHHHcCCCCCCCCCCCcccCCeEEE
Confidence 689999999865 89999999999999999984 899999999 9988 99999999976 57999999999
Q ss_pred EEee
Q psy7836 152 NYEG 155 (189)
Q Consensus 152 ~~~~ 155 (189)
+|++
T Consensus 185 ~~~v 188 (190)
T PRK10903 185 SAKV 188 (190)
T ss_pred EEEE
Confidence 9765
No 19
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=4.7e-42 Score=268.06 Aligned_cols=146 Identities=40% Similarity=0.672 Sum_probs=134.1
Q ss_pred EEEEecceeEEEEEcCCCChHHHHHHHHHHhc--C------ccCCceEEEeecCcEEecCCCC-CCCCCCCcccCCCCCC
Q psy7836 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCME--G------YYNNTIIHRVVKGFIAQGGDPT-GTGTGGESIYGKPFKD 74 (189)
Q Consensus 4 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~--g------~Y~g~~f~rv~~~~~iqgGd~~-~~~~~~~~~~g~~~~~ 74 (189)
.+-.++.|+|+||||.+.||+||+||++||++ + +|+++.|||++|+|++|+||+. .++.++.++++..+++
T Consensus 8 ~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~~g~~~~~ 87 (164)
T cd01926 8 TIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKSIYGEKFPD 87 (164)
T ss_pred eECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCCCCcccCCccCC
Confidence 33346899999999999999999999999983 5 8999999999999999999974 6677888888999999
Q ss_pred cccCCcccccceEEEEeccCCCCCCceEEEEcCCCCCCCCCCeEEEEEE-cCcchhhhhhhhcccCCCCCcccCeEEEEE
Q psy7836 75 EIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA-GDTIYNMIKLDEIMVDHVSTYLEYRKRINY 153 (189)
Q Consensus 75 E~~~~l~~~~~G~vsm~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~V~-G~~v~~l~~i~~~~~~~~~~P~~~i~I~~~ 153 (189)
|.. .++|+++|+|+|++.++++++|||||+++++++||++|+|||+|+ |+++ |++|++++++ +++|+.+|+|.+|
T Consensus 88 e~~-~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dv--l~~i~~~~~~-~~~P~~~i~I~~c 163 (164)
T cd01926 88 ENF-KLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDV--VKKIENVGSG-NGKPKKKVVIADC 163 (164)
T ss_pred CCc-cccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHH--HHHHHcCCCC-CCCCcCCeEEEEC
Confidence 865 688999999999999999999999999999999999999999999 9988 9999999998 9999999999983
No 20
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=4.8e-42 Score=272.32 Aligned_cols=151 Identities=38% Similarity=0.648 Sum_probs=136.0
Q ss_pred EEEEEecceeEEEEEcCCCChHHHHHHHHHHh---------cCccCCceEEEeecCcEEecCCCC-CCCCCCCcccCCCC
Q psy7836 3 AVLLKTSVGDIDIELWSREAPKACRNFVQLCM---------EGYYNNTIIHRVVKGFIAQGGDPT-GTGTGGESIYGKPF 72 (189)
Q Consensus 3 ~v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~---------~g~Y~g~~f~rv~~~~~iqgGd~~-~~~~~~~~~~g~~~ 72 (189)
..+-.++.|+|+||||.+.||++|+||++||+ .++|+|+.|||++|+++||+||+. .++.++.++++..+
T Consensus 22 i~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~~g~~~~g~~~ 101 (183)
T PTZ00060 22 ISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNHNGTGGESIYGRKF 101 (183)
T ss_pred EEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccCCCCCCCCccccccc
Confidence 33445678999999999999999999999997 468999999999999999999975 56778888889899
Q ss_pred CCcccCCcccccceEEEEeccCCCCCCceEEEEcCCCCCCCCCCeEEEEEE-cCcchhhhhhhhcccCCCCCcccCeEEE
Q psy7836 73 KDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA-GDTIYNMIKLDEIMVDHVSTYLEYRKRI 151 (189)
Q Consensus 73 ~~E~~~~l~~~~~G~vsm~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~V~-G~~v~~l~~i~~~~~~~~~~P~~~i~I~ 151 (189)
++|.. .++|+++|+|+|++.++++++|||||++.++|+||++|+|||+|+ |+++ +++|+++++ .+++|.++|+|.
T Consensus 102 ~~e~~-~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dv--l~~I~~~~~-~~~~P~~~v~I~ 177 (183)
T PTZ00060 102 TDENF-KLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEV--VRAMEKEGT-QSGYPKKPVVVT 177 (183)
T ss_pred CCccc-cccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHH--HHHHHccCC-CCCCCcCCeEEE
Confidence 99865 688989999999999999999999999999999999999999999 9988 999999887 578999999999
Q ss_pred EEeeccccc
Q psy7836 152 NYEGAGKVE 160 (189)
Q Consensus 152 ~~~~~g~l~ 160 (189)
+ ||++|
T Consensus 178 ~---cg~~~ 183 (183)
T PTZ00060 178 D---CGELQ 183 (183)
T ss_pred E---eEEcC
Confidence 8 77664
No 21
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=6.9e-42 Score=271.95 Aligned_cols=145 Identities=37% Similarity=0.619 Sum_probs=133.2
Q ss_pred ecceeEEEEEcCCCChHHHHHHHHHHhcCc--------cCCceEEEeecCcEEecCCC-CCCCCCCCcccCCCCCCcccC
Q psy7836 8 TSVGDIDIELWSREAPKACRNFVQLCMEGY--------YNNTIIHRVVKGFIAQGGDP-TGTGTGGESIYGKPFKDEIHS 78 (189)
Q Consensus 8 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Y~g~~f~rv~~~~~iqgGd~-~~~~~~~~~~~g~~~~~E~~~ 78 (189)
++.|+|+||||.+.||+||+||++||++++ |+++.||||+|+++|||||+ .+++.++.++|+..|++|..
T Consensus 30 ~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~~~~~g~~f~~e~~- 108 (186)
T PLN03149 30 IPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGCVSIYGSKFEDENF- 108 (186)
T ss_pred cccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCcccccCCccCCccc-
Confidence 367999999999999999999999997644 99999999999999999997 46778888888999999876
Q ss_pred CcccccceEEEEeccCCCCCCceEEEEcCCCCCCCCCCeEEEEEE--cCcchhhhhhhhcccCCCCCcccCeEEEEEeec
Q psy7836 79 RLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA--GDTIYNMIKLDEIMVDHVSTYLEYRKRINYEGA 156 (189)
Q Consensus 79 ~l~~~~~G~vsm~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~V~--G~~v~~l~~i~~~~~~~~~~P~~~i~I~~~~~~ 156 (189)
.++|+++|+|+|++.++++++|||||++.++|+||++|+|||+|+ |+++ |++|++++++.+++|..+|+|.+ |
T Consensus 109 ~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dv--l~~I~~~~~~~~~~P~~~i~I~~---c 183 (186)
T PLN03149 109 IAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLV--VRKIENVATGPNNRPKLACVISE---C 183 (186)
T ss_pred ccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHH--HHHHHcCCCCCCCCCcCCeEEEe---C
Confidence 578999999999999999999999999999999999999999998 7777 99999999999999999999998 6
Q ss_pred cc
Q psy7836 157 GK 158 (189)
Q Consensus 157 g~ 158 (189)
|+
T Consensus 184 G~ 185 (186)
T PLN03149 184 GE 185 (186)
T ss_pred Ee
Confidence 64
No 22
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=3.6e-41 Score=260.88 Aligned_cols=142 Identities=34% Similarity=0.509 Sum_probs=125.1
Q ss_pred EEecceeEEEEEcCCCChHHHHHHHHHHhcCccCCceEEEeecCcEEecCCCCCCCCCCCcccCCCCCCcccCCcccccc
Q psy7836 6 LKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTGGESIYGKPFKDEIHSRLRFVRR 85 (189)
Q Consensus 6 ~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~rv~~~~~iqgGd~~~~~~~~~~~~g~~~~~E~~~~l~~~~~ 85 (189)
|+|+.|+|+|+||++.||+||+||++||+.|||+|+.||||+|+|++|||++.....+ ..++.++.+|....+ |+++
T Consensus 2 l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~--~~~~~~~~~e~~~~~-~~~~ 78 (155)
T cd01920 2 FQTSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPDLAQ--KETLKPIKNEAGNGL-SNTR 78 (155)
T ss_pred cEecceeEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCcEEEeCCCCCCCCc--cccCCcccCcccccc-cCCc
Confidence 7899999999999999999999999999999999999999999999999998654332 233567788866444 4699
Q ss_pred eEEEEeccC-CCCCCceEEEEcCCCCCCCC-----CCeEEEEEE-cCcchhhhhhhhcccCCC----CCcccCeEEEE
Q psy7836 86 GLVAMANAG-KDDNGSQFFFTLAATPELNS-----KHTIFGKVA-GDTIYNMIKLDEIMVDHV----STYLEYRKRIN 152 (189)
Q Consensus 86 G~vsm~~~~-~~~~~sqFfI~l~~~~~ld~-----~~~vFG~V~-G~~v~~l~~i~~~~~~~~----~~P~~~i~I~~ 152 (189)
|+||||+.+ +++++|||||+++++++||+ +|+|||+|+ |+++ |++|++++++.. ++|..+|+|.+
T Consensus 79 G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dv--l~~I~~~~~~~~~~~~~~p~~~v~i~~ 154 (155)
T cd01920 79 GTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDV--VDKIAGVETYSFGSYQDVPVQDVIIES 154 (155)
T ss_pred eEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHH--HHHHHcCCccCCCCcCCCcCCCeEEEE
Confidence 999999965 89999999999999999995 799999999 9888 999999999764 69999999986
No 23
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=1.7e-40 Score=253.91 Aligned_cols=145 Identities=46% Similarity=0.707 Sum_probs=133.2
Q ss_pred EEEecceeEEEEEcCCCChHHHHHHHHHHhcCccCCceEEEeecCcEEecCCCCCCCCCCCcccCCCCCCcccCCccccc
Q psy7836 5 LLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTGGESIYGKPFKDEIHSRLRFVR 84 (189)
Q Consensus 5 ~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~rv~~~~~iqgGd~~~~~~~~~~~~g~~~~~E~~~~l~~~~ 84 (189)
+++|+.|+|+|+||++.||++|+||++||++++|+|+.|||++|++++|+|++......+ +.++..+++|..+...|++
T Consensus 1 ~~~T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~-~~~~~~~~~E~~~~~~~~~ 79 (146)
T cd00317 1 TLDTTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGTGGGG-SGPGYKFPDENFPLKYHHR 79 (146)
T ss_pred CeEeccCcEEEEEcCCCChHHHHHHHHHHhcCCcCCCEEEEEeCCCeEEECCCCCCCCCC-CcCCCccCCccccCcCcCC
Confidence 478999999999999999999999999999999999999999999999999987554432 3557889999987776889
Q ss_pred ceEEEEeccCCCCCCceEEEEcCCCCCCCCCCeEEEEEE-cCcchhhhhhhhcccCCCCCcccCeEEEE
Q psy7836 85 RGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA-GDTIYNMIKLDEIMVDHVSTYLEYRKRIN 152 (189)
Q Consensus 85 ~G~vsm~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~V~-G~~v~~l~~i~~~~~~~~~~P~~~i~I~~ 152 (189)
+|+|+|++.++++++|||||++.++++||++|+|||+|+ |+++ |++|++.+++++++|.++|+|.+
T Consensus 80 ~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~v--l~~I~~~~~~~~~~P~~~i~I~~ 146 (146)
T cd00317 80 RGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDV--VDKIERGDTDENGRPIKPVTISD 146 (146)
T ss_pred CcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHH--HHHHHcCCCCCCCcCcCceEEeC
Confidence 999999999999999999999999999999999999999 9888 99999999999999999999973
No 24
>KOG0111|consensus
Probab=100.00 E-value=5.7e-40 Score=261.11 Aligned_cols=148 Identities=36% Similarity=0.632 Sum_probs=137.8
Q ss_pred EEEecceeEEEEEcCCCChHHHHHHHHHHhc--Cc-cCCceEEEeecCcEEecCCCC-CCCCCCCcccCCCCCCcccCCc
Q psy7836 5 LLKTSVGDIDIELWSREAPKACRNFVQLCME--GY-YNNTIIHRVVKGFIAQGGDPT-GTGTGGESIYGKPFKDEIHSRL 80 (189)
Q Consensus 5 ~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~--g~-Y~g~~f~rv~~~~~iqgGd~~-~~~~~~~~~~g~~~~~E~~~~l 80 (189)
+-.-..|+|+++|..+..|+|++||..||.+ || |+|++||||+|.||+||||.+ ++|+||.++||.+|.||++ .|
T Consensus 145 ig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggksiygkkfddenf-~l 223 (298)
T KOG0111|consen 145 IGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSIYGKKFDDENF-TL 223 (298)
T ss_pred ecccccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCcccccccccccce-ee
Confidence 4456789999999999999999999999975 55 999999999999999999996 7899999999999999999 69
Q ss_pred ccccceEEEEeccCCCCCCceEEEEcCCCCCCCCCCeEEEEEE-cCcchhhhhhhhcccCCCCCcccCeEEEEEeecccc
Q psy7836 81 RFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA-GDTIYNMIKLDEIMVDHVSTYLEYRKRINYEGAGKV 159 (189)
Q Consensus 81 ~~~~~G~vsm~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~V~-G~~v~~l~~i~~~~~~~~~~P~~~i~I~~~~~~g~l 159 (189)
+|..+|+|||||+++|+||||||||.....|||++|+|||.|+ |++| +.++++..+ ++|+|.+.|+|.. ||++
T Consensus 224 kht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~v--vrq~e~qgs-ksgkp~qkv~i~~---cge~ 297 (298)
T KOG0111|consen 224 KHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNV--VRQVEQQGS-KSGKPQQKVKIVE---CGEI 297 (298)
T ss_pred ecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHH--HHHHHhccC-CCCCcceEEEEEe---cccc
Confidence 9999999999999999999999999999999999999999999 9988 888887765 8999999999997 8875
No 25
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=3.9e-38 Score=242.91 Aligned_cols=148 Identities=43% Similarity=0.703 Sum_probs=128.8
Q ss_pred EEEEec-ceeEEEEEcCCCChHHHHHHHHHHhcCccCCceEEEeecCcEEecCCCCCCCCCCC--cccCCCCCCcccCCc
Q psy7836 4 VLLKTS-VGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTGGE--SIYGKPFKDEIHSRL 80 (189)
Q Consensus 4 v~~~T~-~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~rv~~~~~iqgGd~~~~~~~~~--~~~g~~~~~E~~~~l 80 (189)
|.++|+ +|+|+||||++.||++|+||++||+.++|+|+.|||++|++++|+|++...+..+. ...+.++++|..+..
T Consensus 2 ~~i~t~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~E~~~~~ 81 (155)
T PF00160_consen 2 VDIETSGLGRIVIELFGDEAPKTVENFLRLCTSGFYDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIPDEFNPSL 81 (155)
T ss_dssp EEEEETTEEEEEEEEETTTSHHHHHHHHHHHHTTSSTTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBSSSGBTTS
T ss_pred EEEEeCCccCEEEEEeCCCCcHHHHhhehhhcccccCCceeecccccceeeeeeccCCCCcccccccCcccccccccccc
Confidence 789997 99999999999999999999999999999999999999999999999875443111 223446889985333
Q ss_pred ccccceEEEEeccC--CCCCCceEEEEcCCCCCCCCCCeEEEEEE-cCcchhhhhhhhcccCCCCCcccCeEEEEEee
Q psy7836 81 RFVRRGLVAMANAG--KDDNGSQFFFTLAATPELNSKHTIFGKVA-GDTIYNMIKLDEIMVDHVSTYLEYRKRINYEG 155 (189)
Q Consensus 81 ~~~~~G~vsm~~~~--~~~~~sqFfI~l~~~~~ld~~~~vFG~V~-G~~v~~l~~i~~~~~~~~~~P~~~i~I~~~~~ 155 (189)
.++++|+|+|++.+ +++++|||||+|+++++||++|+|||+|+ |+++ +++|++.+++. +|.++|+|.+|.+
T Consensus 82 ~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~v--l~~i~~~~~~~--~p~~~v~I~~cgv 155 (155)
T PF00160_consen 82 LKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDV--LDKIEAGPTDE--RPKQDVTISSCGV 155 (155)
T ss_dssp SSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHH--HHHHHTSBBTT--EBSSTEEEEEEEE
T ss_pred ccccceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHH--HHHHHCCCCCC--ccCCCeEEEEeEC
Confidence 33499999999975 78889999999999999999999999999 9887 99999998877 9999999999754
No 26
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=5.3e-37 Score=241.99 Aligned_cols=128 Identities=36% Similarity=0.581 Sum_probs=108.0
Q ss_pred EecceeEEEEEcCCCChHHHHHHHHHHhcCccCCceEEEeecCcEEecCCCCCCCCC---------------------CC
Q psy7836 7 KTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTG---------------------GE 65 (189)
Q Consensus 7 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~rv~~~~~iqgGd~~~~~~~---------------------~~ 65 (189)
.|++|+|+|+||++.||+||+||++||+.|||+++.||||+++|++|||++..++.+ +.
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~~~~ 82 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQKQ 82 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHHhCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccCCCC
Confidence 589999999999999999999999999999999999999999999999998754322 22
Q ss_pred cccCCCCC----CcccCCcccccceEEEEeccC--CCCCCceEEEEcC-------CCCCCCCCCeEEEEEE-cCcchhhh
Q psy7836 66 SIYGKPFK----DEIHSRLRFVRRGLVAMANAG--KDDNGSQFFFTLA-------ATPELNSKHTIFGKVA-GDTIYNMI 131 (189)
Q Consensus 66 ~~~g~~~~----~E~~~~l~~~~~G~vsm~~~~--~~~~~sqFfI~l~-------~~~~ld~~~~vFG~V~-G~~v~~l~ 131 (189)
++++..+. ++..+.++|+.+|+|||++.+ +++++|||||++. +.++||++|+|||+|+ ||++ ++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dv--l~ 160 (176)
T cd01924 83 PVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDI--LR 160 (176)
T ss_pred CccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHH--HH
Confidence 34444332 232335678899999999987 6999999999998 7899999999999999 9988 88
Q ss_pred hhhhc
Q psy7836 132 KLDEI 136 (189)
Q Consensus 132 ~i~~~ 136 (189)
+|+..
T Consensus 161 ~I~~g 165 (176)
T cd01924 161 ELKVG 165 (176)
T ss_pred hhcCC
Confidence 88654
No 27
>KOG0415|consensus
Probab=100.00 E-value=5.9e-37 Score=257.57 Aligned_cols=151 Identities=43% Similarity=0.727 Sum_probs=143.0
Q ss_pred EEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCccCCceEEEeecCcEEecCCCCCCCCCCCcccCC-------CCCCc
Q psy7836 3 AVLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTGGESIYGK-------PFKDE 75 (189)
Q Consensus 3 ~v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~rv~~~~~iqgGd~~~~~~~~~~~~g~-------~~~~E 75 (189)
+|+|+|++|+|+|.||.+++|.+|.|||+||+-.||+.+.||-|..+|++|.|||+++|.||.++|+. .|+.|
T Consensus 2 sVlieTtlGDlvIDLf~~erP~~clNFLKLCk~KYYN~clfh~vq~~f~aQTGDPtGtG~GG~si~~~lyG~q~rffeaE 81 (479)
T KOG0415|consen 2 SVLIETTLGDLVIDLFVKERPRTCLNFLKLCKIKYYNFCLFHTVQRDFTAQTGDPTGTGDGGESIYGVLYGEQARFFEAE 81 (479)
T ss_pred cEEEEeecccEEeeeecccCcHHHHHHHHHHhHhhcccceeeeccccceeecCCCCCCCCCcceeeeecccccchhhhhh
Confidence 58999999999999999999999999999999999999999999999999999999999999998863 68899
Q ss_pred ccCCcccccceEEEEeccCCCCCCceEEEEcCCC-CCCCCCCeEEEEEE-cCcchhhhhhhhcccCCCCCcccCeEEEEE
Q psy7836 76 IHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAAT-PELNSKHTIFGKVA-GDTIYNMIKLDEIMVDHVSTYLEYRKRINY 153 (189)
Q Consensus 76 ~~~~l~~~~~G~vsm~~~~~~~~~sqFfI~l~~~-~~ld~~~~vFG~V~-G~~v~~l~~i~~~~~~~~~~P~~~i~I~~~ 153 (189)
..+.++|.+.|+|||++.+.+.+||||||||+++ ..||++|+|||+|+ |+++ |.+|+..-++.+++|.++|+|..-
T Consensus 82 ~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dt--l~kiNea~vD~~~rPykdIRI~HT 159 (479)
T KOG0415|consen 82 FLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDT--LTKINEAIVDPKNRPYKDIRIKHT 159 (479)
T ss_pred hcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHH--HHHHHHHhcCCCCCcccceeeeee
Confidence 9999999999999999999999999999999985 57999999999999 9988 999999999999999999999974
Q ss_pred ee
Q psy7836 154 EG 155 (189)
Q Consensus 154 ~~ 155 (189)
-+
T Consensus 160 ii 161 (479)
T KOG0415|consen 160 II 161 (479)
T ss_pred EE
Confidence 43
No 28
>KOG0865|consensus
Probab=99.97 E-value=2e-31 Score=207.19 Aligned_cols=145 Identities=39% Similarity=0.673 Sum_probs=131.6
Q ss_pred EecceeEEEEEcCCCChHHHHHHHHHHhcC--c-cCCceEEE---eecCcEEecCCCC-CCCCCCCcccCCCCCCcccCC
Q psy7836 7 KTSVGDIDIELWSREAPKACRNFVQLCMEG--Y-YNNTIIHR---VVKGFIAQGGDPT-GTGTGGESIYGKPFKDEIHSR 79 (189)
Q Consensus 7 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g--~-Y~g~~f~r---v~~~~~iqgGd~~-~~~~~~~~~~g~~~~~E~~~~ 79 (189)
..++|++.++||++..|+|++||.+||.+. + |++..||| .+++|++||||.+ .+++++.++|++.|+||++ .
T Consensus 14 ~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSiy~ekF~DenF-i 92 (167)
T KOG0865|consen 14 GEPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSIYGEKFDDENF-I 92 (167)
T ss_pred CccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccceEecccccCCcCc-E
Confidence 478999999999999999999999999852 2 99999999 3447999999986 6789999999999999999 7
Q ss_pred cccccceEEEEeccCCCCCCceEEEEcCCCCCCCCCCeEEEEEE-cCcchhhhhhhhcccCCCCCcccCeEEEEEeeccc
Q psy7836 80 LRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA-GDTIYNMIKLDEIMVDHVSTYLEYRKRINYEGAGK 158 (189)
Q Consensus 80 l~~~~~G~vsm~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~V~-G~~v~~l~~i~~~~~~~~~~P~~~i~I~~~~~~g~ 158 (189)
++|..+|.|+|||.+|++|+|||||++....|||++|+|||+|. |+++ +++++.. ...++++..+|.|.+ ||.
T Consensus 93 lkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~i--v~a~e~~-gs~~gk~~~~i~i~d---cg~ 166 (167)
T KOG0865|consen 93 LKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDI--VEAMERF-GSRNGKTSKKITIAD---CGQ 166 (167)
T ss_pred EecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccch--hhhhhcc-CCcCCcccccEEEec---CCc
Confidence 99999999999999999999999999999999999999999999 9999 8888874 358899999999998 664
No 29
>KOG0882|consensus
Probab=97.88 E-value=1.2e-05 Score=71.07 Aligned_cols=162 Identities=18% Similarity=0.225 Sum_probs=125.3
Q ss_pred EEEEEecce----eEEEEEcCCCChHHHHHHHHHHhcCccCCceEEEeecCcEEecCCCCCC-CCCCC-ccc-CC---CC
Q psy7836 3 AVLLKTSVG----DIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGT-GTGGE-SIY-GK---PF 72 (189)
Q Consensus 3 ~v~~~T~~G----~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~rv~~~~~iqgGd~~~~-~~~~~-~~~-g~---~~ 72 (189)
.+.+.|..| .|.|+++..-.|.-++-|..+|+-+++++..|.||...+++|.||.-.. ..+|- ..| +. .+
T Consensus 100 ~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qf 179 (558)
T KOG0882|consen 100 FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQF 179 (558)
T ss_pred ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccC
Confidence 356788999 9999999999999999999999999999999999999999999986311 11111 111 11 12
Q ss_pred CC-cccCCcccccceEEEEeccCCCCCCceEEEEcCCCCCCCCCCeEEEEEE-cCcchhhhhhhhcccCCCCCcccCeEE
Q psy7836 73 KD-EIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA-GDTIYNMIKLDEIMVDHVSTYLEYRKR 150 (189)
Q Consensus 73 ~~-E~~~~l~~~~~G~vsm~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~V~-G~~v~~l~~i~~~~~~~~~~P~~~i~I 150 (189)
++ +..-.+|| ..-++...+......+-+|++.-...+.+..+..|||++. +.++ ++.|.+..++....|+.++.|
T Consensus 180 Pr~~l~~~~K~-eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl--vqeiDE~~t~~~~q~ks~y~l 256 (558)
T KOG0882|consen 180 PRTNLNFELKH-ETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL--VQEIDEVLTDAQYQPKSPYGL 256 (558)
T ss_pred ccccccccccc-cchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchh--hhhhhccchhhhhcccccccc
Confidence 22 23335666 5667777665555556789998888888889999999999 8788 889999999999999999999
Q ss_pred EEEeecccccccccccc
Q psy7836 151 INYEGAGKVEWGERAAN 167 (189)
Q Consensus 151 ~~~~~~g~l~~~~~~~~ 167 (189)
..++..-++..++..++
T Consensus 257 ~~VelgRRmaverelek 273 (558)
T KOG0882|consen 257 MHVELGRRMAVERELEK 273 (558)
T ss_pred ceeehhhhhhHHhhHhh
Confidence 99988766666555544
No 30
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.70 E-value=0.013 Score=52.88 Aligned_cols=98 Identities=23% Similarity=0.428 Sum_probs=64.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhcCccCCceEEEeecCcEEecCCCCCCCCCCCcccCCCCCCcccCCcccccceEEEEe
Q psy7836 12 DIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTGGESIYGKPFKDEIHSRLRFVRRGLVAMA 91 (189)
Q Consensus 12 ~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~rv~~~~~iqgGd~~~~~~~~~~~~g~~~~~E~~~~l~~~~~G~vsm~ 91 (189)
.+.+||. ..+|.++++|+++.+.|.+. +.+....|+. .....+...+.|+.. - -++|+|.+.
T Consensus 202 y~evE~~-~~~p~s~EH~la~~~~G~~~---Vd~~tsTfi~-----------d~~L~g~~~p~En~~-~--R~rGtVTVR 263 (503)
T TIGR03268 202 YVEVELD-PNAPVSVEHFLALMEDGTFR---VDYRTSTFIS-----------DDSLRGLDKPEENIE-K--RRRGAVTVR 263 (503)
T ss_pred EEEEEEc-CCCChhHHHHHHHHhCCeEE---EeeeecceEe-----------cccccCccCCccccC-c--ccceeEEEE
Confidence 4677876 48999999999999998631 2222222221 112235556667652 2 378999999
Q ss_pred ccCCCCCCceEEEEcCCCCCCCCCCeEEEEEE-cCcchhh
Q psy7836 92 NAGKDDNGSQFFFTLAATPELNSKHTIFGKVA-GDTIYNM 130 (189)
Q Consensus 92 ~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~V~-G~~v~~l 130 (189)
+.|.+ .-..||.-.+-+. .-.|+|+|+|+ |+++..+
T Consensus 264 n~G~G--~G~VYIYredr~s-s~sHtvVG~V~~GiELid~ 300 (503)
T TIGR03268 264 NSGVG--EGRVYIYREDRPS-SLSHNVVGHVTRGIELIDI 300 (503)
T ss_pred eeccC--ceeEEEEcCCCCC-CcccceeEEEecceeeeec
Confidence 87653 3368888776442 23599999999 9988433
No 31
>PRK00969 hypothetical protein; Provisional
Probab=96.63 E-value=0.013 Score=52.79 Aligned_cols=97 Identities=26% Similarity=0.454 Sum_probs=63.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhcCccCCceEEEeecCcEEecCCCCCCCCCCCcccCCCCCCcccCCcccccceEEEEe
Q psy7836 12 DIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTGGESIYGKPFKDEIHSRLRFVRRGLVAMA 91 (189)
Q Consensus 12 ~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~rv~~~~~iqgGd~~~~~~~~~~~~g~~~~~E~~~~l~~~~~G~vsm~ 91 (189)
.+.+||.+ .+|.++++|+++.+.|.+. +.+....|+.. ....|...+.|+.. - -++|+|++.
T Consensus 205 y~eve~~~-~~p~s~EH~la~~~~G~f~---Vd~~tstfI~d-----------~~L~g~~~p~En~~-~--R~~GtVTVR 266 (508)
T PRK00969 205 YVEVELDP-GAPKSVEHFLALLEDGTFE---VDFETSTFIAD-----------DRLQGLKIPEENFE-P--RRRGTVTVR 266 (508)
T ss_pred EEEEEEcC-CCCchHHHHHHHHhCCeEE---EeeeecceEee-----------ccccCccCCccccC-c--cccceEEEE
Confidence 46678875 8999999999999998631 22222222211 12224556667652 2 378999999
Q ss_pred ccCCCCCCceEEEEcCCCCCCCCCCeEEEEEE-cCcchh
Q psy7836 92 NAGKDDNGSQFFFTLAATPELNSKHTIFGKVA-GDTIYN 129 (189)
Q Consensus 92 ~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~V~-G~~v~~ 129 (189)
+.|.+ .-.-||.-.+-+. --.|+|+|+|+ |+++..
T Consensus 267 t~G~g--~G~vYIyredr~s-s~sHtvVG~V~~GiELi~ 302 (508)
T PRK00969 267 TAGVG--VGKVYIYREDRPS-SLSHTVVGRVTHGIELID 302 (508)
T ss_pred eeccC--ceeEEEECCCCCC-CccceeEEEEecceeeee
Confidence 87654 3468888776542 23599999999 998843
No 32
>PRK00969 hypothetical protein; Provisional
Probab=95.56 E-value=0.14 Score=46.43 Aligned_cols=114 Identities=17% Similarity=0.228 Sum_probs=69.9
Q ss_pred cEEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCccCCceEEEeecCcEEecCCCCCCCCCCCcccCCCCCCcccCCcc
Q psy7836 2 QAVLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTGGESIYGKPFKDEIHSRLR 81 (189)
Q Consensus 2 ~~v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~rv~~~~~iqgGd~~~~~~~~~~~~g~~~~~E~~~~l~ 81 (189)
+...+.|++|.|+|||. ....++.-|+..++. |.|...+=.-++- +..|.+.. .++.+.. -.
T Consensus 51 ~~y~IkTtkG~i~Iel~--~~~~~~~~w~e~yk~--~e~~~i~W~s~~~-vAfGp~~s-----------~l~p~~~--~~ 112 (508)
T PRK00969 51 KKYRIKTTKGEIVIELT--EENESVDFWLENYKE--FEGKSLRWTSRSA-VAFGPFES-----------DLEPSRE--EY 112 (508)
T ss_pred ceEEEEccCceEEEEEc--cCcchhhHHHHhHHh--hcCCceEeccccc-eeEccccc-----------CcccccC--cc
Confidence 35689999999999999 555566777776654 5666664443333 33343321 1111111 11
Q ss_pred cccceEEEEeccCCCCCCceEEEEcCCCCCCCC--CCeEEEEEE-cCcchhhhhhhh
Q psy7836 82 FVRRGLVAMANAGKDDNGSQFFFTLAATPELNS--KHTIFGKVA-GDTIYNMIKLDE 135 (189)
Q Consensus 82 ~~~~G~vsm~~~~~~~~~sqFfI~l~~~~~ld~--~~~vFG~V~-G~~v~~l~~i~~ 135 (189)
...++-|.+.-+|-+...+.+.|...+....-| .--+||+|+ |..+ |+++..
T Consensus 113 ~y~r~DV~lg~~G~dp~~thLIfsk~~h~a~YG~p~~gv~grVi~Gk~v--l~~L~~ 167 (508)
T PRK00969 113 EYERWDVVLSLSGFDPSETHLIFSKRDHSADYGAPNDGVIGRVVGGKRV--LDRLTD 167 (508)
T ss_pred eeecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCceEEEccchhh--HhhccC
Confidence 247888999888877777777777665321111 116999999 8777 555544
No 33
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.092 Score=46.27 Aligned_cols=94 Identities=21% Similarity=0.444 Sum_probs=63.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhcCc----cCCceEEEeecCcEEecCCCCCCCCCCCcccCCCCCCcccCCcccccceE
Q psy7836 12 DIDIELWSREAPKACRNFVQLCMEGY----YNNTIIHRVVKGFIAQGGDPTGTGTGGESIYGKPFKDEIHSRLRFVRRGL 87 (189)
Q Consensus 12 ~i~ieL~~~~aP~t~~nF~~L~~~g~----Y~g~~f~rv~~~~~iqgGd~~~~~~~~~~~~g~~~~~E~~~~l~~~~~G~ 87 (189)
.+.++|.+ .+|+++++|++|.+.|. |.-.+| + +..+....+.+.|+. .++ .+|.
T Consensus 204 y~eve~s~-nsP~saEH~lalmedG~lri~~~tntf-------i-----------s~~~lq~~~~~~en~-d~R--erG~ 261 (512)
T COG4070 204 YFEVELSR-NSPKSAEHFLALMEDGTLRIDVTTNTF-------I-----------SDDTLQEEKVPEENF-DLR--ERGA 261 (512)
T ss_pred EEEEEeCC-CCchhHHHHHHHhhcceEEEEEeccce-------e-----------eccccccccCChhhh-hhh--hcce
Confidence 46788875 89999999999999875 222222 1 111223556667766 333 7999
Q ss_pred EEEeccCCCCCCceEEEEcCCCCCCCCCCeEEEEEE-cCcchhh
Q psy7836 88 VAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA-GDTIYNM 130 (189)
Q Consensus 88 vsm~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~V~-G~~v~~l 130 (189)
+++.|.|-+ ...-||.-.+-+.- -.|.|.|+|. |+++..+
T Consensus 262 iTvRn~Gvg--eGrvYIyRedR~ss-~sHnvVGrV~eGiELid~ 302 (512)
T COG4070 262 ITVRNVGVG--EGRVYIYREDRPSS-LSHNVVGRVIEGIELIDL 302 (512)
T ss_pred EEEEeeecc--cceEEEEecCCCCc-cccceeeeeecceEEEEe
Confidence 999987643 34678877664432 3489999999 9988433
No 34
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=94.93 E-value=0.33 Score=43.95 Aligned_cols=114 Identities=18% Similarity=0.235 Sum_probs=69.8
Q ss_pred cEEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCccCCceEEEeecCcEEecCCCCCCCCCCCcccCCCCCCcccCCcc
Q psy7836 2 QAVLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTGGESIYGKPFKDEIHSRLR 81 (189)
Q Consensus 2 ~~v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~rv~~~~~iqgGd~~~~~~~~~~~~g~~~~~E~~~~l~ 81 (189)
+...+.|++|.|+|+|- ....+++-|++.++. |.|...+-.-++- +..|.+.. .++.... -.
T Consensus 47 ~~y~IkTtkG~i~iel~--~~~~~~~~w~e~y~~--~e~~~i~W~s~~~-vAfGp~~s-----------dl~p~~~--~~ 108 (503)
T TIGR03268 47 KEYLIKTTKGEVVIELT--PNTEAGKFWSEIYKE--LEGKQIRWTTPQE-VAFGPFPS-----------DLEPSRE--PS 108 (503)
T ss_pred ceEEEEccCceEEEEec--CCchHHHHHHHHHHh--hcCCceeecchhh-eeeCcccC-----------CccccCC--cc
Confidence 35689999999999999 355667777766654 5555554333332 23232211 1111111 11
Q ss_pred cccceEEEEeccCCCCCCceEEEEcCCCCC---CCCCCeEEEEEE-cCcchhhhhhhh
Q psy7836 82 FVRRGLVAMANAGKDDNGSQFFFTLAATPE---LNSKHTIFGKVA-GDTIYNMIKLDE 135 (189)
Q Consensus 82 ~~~~G~vsm~~~~~~~~~sqFfI~l~~~~~---ld~~~~vFG~V~-G~~v~~l~~i~~ 135 (189)
...++-|.+.-+|-+...+.+.|...+... +...--+||+|+ |..+ |+++..
T Consensus 109 ~y~r~DV~lg~~G~d~~~thLIfsk~~h~~~YG~p~~~gvigrvi~Gk~v--l~~L~~ 164 (503)
T TIGR03268 109 EYERWDVILSLSGFDPDETHIIFSKKRHAAEYGVPDENGIIARVVGGKRV--IDRLSD 164 (503)
T ss_pred eeecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCCEEEEEccchhh--HhhccC
Confidence 247889999888877777777777766431 122457999999 8777 555443
No 35
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=82.36 E-value=3.1 Score=36.94 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=28.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHhc--CccCCceEEEeecC
Q psy7836 11 GDIDIELWSREAPKACRNFVQLCME--GYYNNTIIHRVVKG 49 (189)
Q Consensus 11 G~i~ieL~~~~aP~t~~nF~~L~~~--g~Y~g~~f~rv~~~ 49 (189)
--|.||||.+.||+++..|+.+..- .---..+.|-..++
T Consensus 376 kiieIELyed~APrSv~yFRr~t~l~~kpVGkL~Vhfay~d 416 (512)
T COG4070 376 KIIEIELYEDRAPRSVWYFRRSTGLKTKPVGKLKVHFAYDD 416 (512)
T ss_pred hEEEEEecCCCCchhhHHHHhhcccccccccceEEEEEeCC
Confidence 3589999999999999999988642 11233566666666
No 36
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=76.79 E-value=6.4 Score=30.23 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=21.7
Q ss_pred EEecceeEEEEEcCCCChHHHHHHHHHH
Q psy7836 6 LKTSVGDIDIELWSREAPKACRNFVQLC 33 (189)
Q Consensus 6 ~~T~~G~i~ieL~~~~aP~t~~nF~~L~ 33 (189)
+....-.++.+|..+.||+||+.|.+..
T Consensus 3 ~~~~g~~~~A~l~~d~AP~Tcaa~~~~L 30 (147)
T PF12903_consen 3 LTKRGVSFTARLLDDKAPKTCAAFWEAL 30 (147)
T ss_dssp ETTTTEEEEEEE-TTTSHHHHHHHHHH-
T ss_pred EecCCeEEEEEEcccCChHHHHHHHHhC
Confidence 3344557889999999999999999987
No 37
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=45.12 E-value=27 Score=30.68 Aligned_cols=50 Identities=12% Similarity=0.270 Sum_probs=31.9
Q ss_pred cceEEEEeccCCCCCCceEEEEcCCCCCCCCCCeEEEEEEcCcchhhhhhh
Q psy7836 84 RRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVAGDTIYNMIKLD 134 (189)
Q Consensus 84 ~~G~vsm~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~V~G~~v~~l~~i~ 134 (189)
.+|.|.+.|.....-..+.-|++.+.|. |++..|.|+|...+...++-|.
T Consensus 299 ~~G~ItIdN~~ygRY~GElQI~~~dlp~-d~rvNViG~V~~~d~~LLd~I~ 348 (357)
T PF05913_consen 299 KRGDITIDNENYGRYKGELQIVKKDLPA-DERVNVIGRVDEEDLPLLDYIK 348 (357)
T ss_dssp -TTEEEEE-GGGGGGTT-EEEESS-B----TTEEEEEEE-GGGGGGGGG--
T ss_pred cCceEEEeCCCccccccEEEEEcccCCC-CCCeeEEEEECHHHHHHHHhcC
Confidence 6899999987666666789999999885 8889999999954444455554
No 38
>PF06138 Chordopox_E11: Chordopoxvirus E11 protein; InterPro: IPR009201 This group represents a virion core protein, vaccinia E11L type.
Probab=35.68 E-value=1.4e+02 Score=22.31 Aligned_cols=47 Identities=13% Similarity=0.291 Sum_probs=34.5
Q ss_pred EEEEEecceeEEEEEcCCCCh---------HHHHHHHHHHhcC-ccCCceEEEeecC
Q psy7836 3 AVLLKTSVGDIDIELWSREAP---------KACRNFVQLCMEG-YYNNTIIHRVVKG 49 (189)
Q Consensus 3 ~v~~~T~~G~i~ieL~~~~aP---------~t~~nF~~L~~~g-~Y~g~~f~rv~~~ 49 (189)
.+.|+|..|++.+..-.+.++ ++++.|++....= .-+.+.|+-++++
T Consensus 5 NIfLEsd~grvkl~~~~~~~~c~~~~~~~~~Av~~Fl~~L~kyI~veeStFylvvrd 61 (130)
T PF06138_consen 5 NIFLESDSGRVKLRYEEPDCKCARTGCEARRAVKHFLSVLKKYIDVEESTFYLVVRD 61 (130)
T ss_pred EEEEeccCceeEEEEeCCCcccccccchHHHHHHHHHHHHHhhEEecccEEEEEEec
Confidence 578999999998888755433 3678898887541 1467888888876
No 39
>PHA03001 putative virion core protein; Provisional
Probab=27.87 E-value=2.5e+02 Score=21.12 Aligned_cols=47 Identities=21% Similarity=0.320 Sum_probs=33.7
Q ss_pred EEEEEecceeEEEEEcCC--CCh------HHHHHHHHHHhcC-ccCCceEEEeecC
Q psy7836 3 AVLLKTSVGDIDIELWSR--EAP------KACRNFVQLCMEG-YYNNTIIHRVVKG 49 (189)
Q Consensus 3 ~v~~~T~~G~i~ieL~~~--~aP------~t~~nF~~L~~~g-~Y~g~~f~rv~~~ 49 (189)
.+.|+|..|++.+..-.. .+| +++++|++...+= .-+.+.|+-++++
T Consensus 5 NIfLEsd~grvkl~~~~~~~~~~~~~~~~ka~~~fl~~L~kYi~v~eStFylvvrd 60 (132)
T PHA03001 5 NIFLETDAGRVKLAIENPDKVCATKAEMRKAINKFLELLKKYIHVDKSTFYLVVKD 60 (132)
T ss_pred EEEEeccCCceEEEEcCCCccccccchHHHHHHHHHHHHHhhEEecccEEEEEEec
Confidence 578999999988876433 333 4778998887541 1467888888876
No 40
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=25.88 E-value=2.6e+02 Score=20.27 Aligned_cols=97 Identities=16% Similarity=0.160 Sum_probs=50.0
Q ss_pred EEEEEecceeEEEEEcCCCChHHHHHHHHHHh----cCccCCceEEEeecCcEEecCCCCCCCCCCCcccCCCCC-Cccc
Q psy7836 3 AVLLKTSVGDIDIELWSREAPKACRNFVQLCM----EGYYNNTIIHRVVKGFIAQGGDPTGTGTGGESIYGKPFK-DEIH 77 (189)
Q Consensus 3 ~v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~----~g~Y~g~~f~rv~~~~~iqgGd~~~~~~~~~~~~g~~~~-~E~~ 77 (189)
++.+.-....+.++|+.. .|++.|++..= -..|.+ .++--.|- .++ ++..
T Consensus 2 kI~i~i~~~~~~a~L~d~---~ta~~~~~~LPlt~~~~~~g~-E~y~~~p~---------------------~l~~~~~~ 56 (120)
T PF04126_consen 2 KIKITIGGQEIEAELNDS---PTARAFAAQLPLTVTMNDWGN-EKYFSLPL---------------------KLPTEENP 56 (120)
T ss_dssp EEEEEETTEEEEEEEETT---HHHHHHHHC-SEEEEEEECTT-EEEEE-S--------------------------SSSE
T ss_pred eEEEEECCEEEEEEECCC---HHHHHHHHhCCeEEEHHHCCc-eEEEeCCC---------------------CCCcccCc
Confidence 456677788999999976 78888887651 112321 22211111 111 1111
Q ss_pred CCcccccceEEEEeccCCCCCCceEEEEcCCCC-------CCCCCCeEEEEEE-cCcchhhhhh
Q psy7836 78 SRLRFVRRGLVAMANAGKDDNGSQFFFTLAATP-------ELNSKHTIFGKVA-GDTIYNMIKL 133 (189)
Q Consensus 78 ~~l~~~~~G~vsm~~~~~~~~~sqFfI~l~~~~-------~ld~~~~vFG~V~-G~~v~~l~~i 133 (189)
+ .-.+.|-++.-..+. .|-|-+++.| .+-....++|||. |.+. +.++
T Consensus 57 -~-~~~~~GDi~Yw~pg~-----~l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~--l~~~ 111 (120)
T PF04126_consen 57 -R-SSVEAGDIAYWPPGG-----ALAIFYGDTPISEGGEIRPASPVNVLGRIVSDLEN--LKEV 111 (120)
T ss_dssp -E-SSB-TTEEEEECCCT-----EEEEESS--TT--TTSB--SSSEEEEEEEEC-GGG--GGG-
T ss_pred -c-ccccCceEEEeCCCC-----EEEEEecCcccccccccccCCcceEEEEECCCHHH--HhhC
Confidence 1 123678888754433 3777777764 3445678999999 5444 4444
No 41
>PHA03376 BARF1; Provisional
Probab=24.88 E-value=2.9e+02 Score=22.50 Aligned_cols=89 Identities=11% Similarity=0.052 Sum_probs=51.6
Q ss_pred ceEEEEeccCCCCCCceEEEEcCCCCCCCCCCeEEEEEEcCcchhhhhhhhcc-------cCCCCCcccCeEEEEEeecc
Q psy7836 85 RGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVAGDTIYNMIKLDEIM-------VDHVSTYLEYRKRINYEGAG 157 (189)
Q Consensus 85 ~G~vsm~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~V~G~~v~~l~~i~~~~-------~~~~~~P~~~i~I~~~~~~g 157 (189)
||...|.++. ++-+.+-++-.+.=||.|..+=+=-..+++.++-+..+. ....+=|...++-+.|...|
T Consensus 75 RGrtD~~~~~----gnvsLvI~~l~lSDdGtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sgg 150 (221)
T PHA03376 75 RGFFDIHRSA----NTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNA 150 (221)
T ss_pred ccEEEEEecC----CeEEEEEEeeeecCCceEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCC
Confidence 5666776554 333444444455667888643222112233333333333 12446688888888888544
Q ss_pred ----ccccccccccCCce-eeccCC
Q psy7836 158 ----KVEWGERAANIGVT-LYNTNT 177 (189)
Q Consensus 158 ----~l~~~~~~~~~~~~-~~~~~~ 177 (189)
.++|=|++...|.| ++++..
T Consensus 151 fP~P~~~Wle~~~~~~~~~~~~~~~ 175 (221)
T PHA03376 151 FPHPHVQWLMPEGVEPAPTAANGGV 175 (221)
T ss_pred cCCchheeccccCCCCCCccccCce
Confidence 38899999888888 776644
Done!